Query 015407
Match_columns 407
No_of_seqs 271 out of 1315
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 12:05:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015407.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015407hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j0a_A Beta-1,3-N-acetylglucos 99.9 8E-24 2.7E-28 206.1 17.3 194 136-356 11-216 (280)
2 1xhb_A Polypeptide N-acetylgal 92.9 2.1 7.1E-05 43.0 15.2 165 177-348 62-251 (472)
3 2d7i_A Polypeptide N-acetylgal 91.9 5.1 0.00018 41.6 17.1 163 177-346 145-329 (570)
4 1qg8_A Protein (spore coat pol 91.7 4.8 0.00016 36.0 14.8 117 225-349 78-208 (255)
5 2ffu_A Ppgalnact-2, polypeptid 91.2 4.9 0.00017 40.7 15.8 161 177-348 99-283 (501)
6 3bcv_A Putative glycosyltransf 88.9 8.1 0.00028 34.1 13.6 165 176-350 34-220 (240)
7 4fix_A UDP-galactofuranosyl tr 88.6 9.1 0.00031 40.8 15.8 122 225-348 258-410 (657)
8 2z86_A Chondroitin synthase; G 83.1 13 0.00044 38.5 13.3 123 226-349 165-324 (625)
9 2z86_A Chondroitin synthase; G 73.4 39 0.0013 34.8 13.4 157 175-349 403-566 (625)
10 4hg6_A Cellulose synthase subu 70.9 63 0.0021 35.0 14.8 128 226-357 229-370 (802)
11 1fo8_A Alpha-1,3-mannosyl-glyc 38.1 72 0.0025 31.1 7.4 85 225-319 89-178 (343)
12 2c0n_A A197; thermophil protei 35.9 2.5E+02 0.0085 25.5 10.0 133 195-339 15-158 (203)
13 2bo4_A Mannosylglycerate synth 32.8 94 0.0032 30.8 7.4 170 176-348 28-210 (397)
14 2lnd_A De novo designed protei 32.7 50 0.0017 25.9 4.2 74 144-232 31-104 (112)
15 2z5i_A TM, general control pro 26.0 73 0.0025 22.6 3.8 25 88-112 9-33 (52)
16 1vf5_H Protein PET N; photosyn 25.4 47 0.0016 20.9 2.3 23 15-37 4-26 (29)
17 1q90_N Cytochrome B6F complex 22.5 47 0.0016 21.2 1.9 23 15-37 6-28 (31)
No 1
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*
Probab=99.91 E-value=8e-24 Score=206.11 Aligned_cols=194 Identities=17% Similarity=0.166 Sum_probs=131.6
Q ss_pred CCeeEEEEEECCCC-CHHHHHHHHHHHHhhhhhhhhcccCCcEEEEEEeecCCCCCCchHHHHHHHHhhcCCeeecCCC-
Q 015407 136 RRYLMVVGINTAFS-SRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHV- 213 (407)
Q Consensus 136 ~~~~llI~V~Sa~~-~~~rR~aIR~TW~~~~~~l~~l~~~~~v~v~FvvG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~- 213 (407)
..-.|+|+|+|+++ +..|+++||+||++.+.. . .||.+..+ + ..+... ..++++..++.
T Consensus 11 ~~~~I~~~V~T~~~~~~~R~~~I~~TW~~~~~~--------~---~fifsd~~--d----~~l~~~--~~~~~~~~~~~~ 71 (280)
T 2j0a_A 11 QLGDIFIAVKTTWAFHRSRLDLLLDTWVSRIRQ--------Q---TFIFTDSP--D----ERLQER--LGPHLVVTQCSA 71 (280)
T ss_dssp CGGGEEEEEECCGGGTTTTHHHHHHTGGGGSGG--------G---EEEEESSC--C----HHHHHH--HGGGEEECCC--
T ss_pred CcccEEEEEECcHHHHHHHHHHHHHHHhccCCC--------c---eEEEcCCC--c----cccccc--ccccceeccccc
Confidence 35678999999998 456889999999987521 1 24333322 1 223222 24578887764
Q ss_pred -ccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHHHHHhhcCCCCCeeEEeeccCcccccCCCccccCccccc
Q 015407 214 -EGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLNQKGVRYHEPEYWKF 292 (407)
Q Consensus 214 -DsY~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVni~~L~~~L~~~~~~~~lYiG~~~~gpv~r~~~~Kw~~p~~w~f 292 (407)
+++.+++.|+...+++.. +.+++||+|+|||+|||+++|+.+|..+++..++|+|......+++ .+++.|.+.+
T Consensus 72 ~~~~~~l~~K~~~~~~~~l-~~~~~Wf~~~DDDtyv~~~nL~~~L~~~d~~~~~YiG~~~~~~~~~---~~~~~~~~~~- 146 (280)
T 2j0a_A 72 EHSHPALSCKMAAEFDAFL-VSGLRWFCHVDDDNYVNPKALLQLLKTFPQDRDVYVGKPSLNRPIH---ASELQSKQRT- 146 (280)
T ss_dssp -----CCCHHHHHHHHHHH-HHTCSEEEEEETTEEECHHHHHHHHTTSCTTSCCEEECEEC-------------------
T ss_pred cccccchHHHHHHHHHHHh-CCCCcEEEEeCCCcEEcHHHHHHHHHhCCCCCCEEEEEeccCcccc---ccccCccccc-
Confidence 467889999999998754 3599999999999999999999999999988899999865332322 1345443222
Q ss_pred CCCCCCCCCCC-CCCeeeecHHHHHHHHHhcccc-------CCCCCchHHHHHHHh-cCCCeeecCCCcccCC
Q 015407 293 GEAGNRYFRHA-TGQLYAISKDLAAYISINQHVL-------HKYANEDVSLGSWFI-GLDVEHIDDRRLCCGT 356 (407)
Q Consensus 293 gd~~~~Yp~y~-~G~gYvLS~dla~~I~~~~~~l-------~~~~~EDV~vG~~l~-~l~V~~id~~~f~~~~ 356 (407)
+...| +|| +|+||+||++++++|+...... .....||+++|.|+. .+||...+.+.|....
T Consensus 147 --~~~~~-~y~~GGaG~vlSr~~l~~l~~~~~~~~~~~~~~~~~~~dD~~lG~Cl~~~lGV~~~~~~~Fh~~~ 216 (280)
T 2j0a_A 147 --KLVRF-WFATGGAGFCINRQLALKMVPWASGSHFVDTSALIRLPDDCTVGYIIECKLGGRLQPSPLFHSHL 216 (280)
T ss_dssp ------C-CEECGGGCEEEEHHHHHHHHHHHTTCTTSCCTTTTTSCHHHHHHHHHHHTTCCCEEECTTCCCSS
T ss_pred --ccccc-CcccCCCEEEECHHHHHHHHHhhcccccccccccCCCCccHHHHHHHHhcCCCCceecccccCCC
Confidence 12245 465 6789999999999999754322 223468999999998 9999999999997643
No 2
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=92.89 E-value=2.1 Score=42.96 Aligned_cols=165 Identities=15% Similarity=0.127 Sum_probs=86.4
Q ss_pred EEEEEEeecCCCCCCchHHHHHHHHhhcC-CeeecCCCccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHHH
Q 015407 177 IIMRFVIGHSATSGGILDRAIEAEDRKHG-DFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQ 255 (407)
Q Consensus 177 v~v~FvvG~s~~~~~~~~~~L~~E~~~~~-DIL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVni~~L~~ 255 (407)
..++.|-..|. ++.....|++-.+.+. .+..+...+... + -.+...+.+....+|++..|+|+.+.++-|..
T Consensus 62 ~EIIvVDd~S~--d~~t~~~l~~~~~~~~~~v~vi~~~~n~G-~----~~a~N~g~~~A~gd~i~flD~D~~~~p~~L~~ 134 (472)
T 1xhb_A 62 EEIVLVDDASE--RDFLKRPLESYVKKLKVPVHVIRMEQRSG-L----IRARLKGAAVSRGQVITFLDAHCECTAGWLEP 134 (472)
T ss_dssp EEEEEEECSCC--CGGGTHHHHHHHHSSSSCEEEEECSSCCC-H----HHHHHHHHHHCCSSEEEEEESSEEECTTCHHH
T ss_pred eEEEEEECCCC--cHHHHHHHHHHHHHCCCcEEEEECCCCCC-h----HHHHHHHHHhccCCeEEEECCCeEeCccHHHH
Confidence 45666654443 2224444554445566 455554433221 1 23444455556799999999999999988888
Q ss_pred HHhhcCCCCCeeE-Eeec--c-CcccccC-------CCccccCcccc----------cCC-CCCCCCCCCCCCeeeecHH
Q 015407 256 TLVRHRSKPRVYI-GCMK--S-GPVLNQK-------GVRYHEPEYWK----------FGE-AGNRYFRHATGQLYAISKD 313 (407)
Q Consensus 256 ~L~~~~~~~~lYi-G~~~--~-gpv~r~~-------~~Kw~~p~~w~----------fgd-~~~~Yp~y~~G~gYvLS~d 313 (407)
++......+...+ |.+. . ....... .-.|.....|. ..+ ......+++.|++++++++
T Consensus 135 ll~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~ 214 (472)
T 1xhb_A 135 LLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRD 214 (472)
T ss_dssp HHHHHHHCTTEEEEEEEEEECSSSCCEECCCTTEEEEECTTCCEEEEECCHHHHHHTTTCTTSCEECSBCCSSSEEEEHH
T ss_pred HHHHHHhCCCEEEEeeeeeEcCCCceeccCCCcccceeeccceeecccCCHHHHhcccCCCCCcccCccccceeEEEEHH
Confidence 7776543333333 3221 1 1000000 00111100010 000 0022345678999999999
Q ss_pred HHHHHHHhccccCCCCCchHHHHHHH--hcCCCeeec
Q 015407 314 LAAYISINQHVLHKYANEDVSLGSWF--IGLDVEHID 348 (407)
Q Consensus 314 la~~I~~~~~~l~~~~~EDV~vG~~l--~~l~V~~id 348 (407)
+...+---...+..+..||+-++.=+ .|..+..++
T Consensus 215 ~~~~iGgfde~~~~~g~ED~dl~~R~~~~G~~i~~~p 251 (472)
T 1xhb_A 215 YFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVT 251 (472)
T ss_dssp HHHHTTSCCTTSCTTCCCCSHHHHHHHHTTCEEEEEE
T ss_pred HHHHcCCCCCcccccCchhHHHHHHHHhcCCeEEEcc
Confidence 99887543334444558998887544 455454443
No 3
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=91.86 E-value=5.1 Score=41.61 Aligned_cols=163 Identities=13% Similarity=0.047 Sum_probs=85.1
Q ss_pred EEEEEEeecCCCCCCchHHHHHHHHhhcCCeeecCCCccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHHHH
Q 015407 177 IIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQT 256 (407)
Q Consensus 177 v~v~FvvG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVni~~L~~~ 256 (407)
..++.|-..|. ++.+...|++-.+.+..|..+...+.. .+. .+...+.+....+|++..|+|+.+.++-|..+
T Consensus 145 ~EIIVVDDgS~--D~tl~~~l~~~~~~~~~v~vi~~~~n~-G~~----~A~N~G~~~A~gd~i~fLD~D~~~~p~~L~~l 217 (570)
T 2d7i_A 145 AEIVLVDDFSD--REHLKKPLEDYMALFPSVRILRTKKRE-GLI----RTRMLGASVATGDVITFLDSHCEANVNWLPPL 217 (570)
T ss_dssp EEEEEEECSCC--CGGGTHHHHHHHTTSTTEEEEECSSCC-CHH----HHHHHHHHHCCSSEEEECCSSEEECTTCSHHH
T ss_pred EEEEEEECCCC--cHHHHHHHHHHHHhCCeEEEEECCCCC-CHH----HHHHHHHHhcCCCEEEEEcCCccccccHHHHH
Confidence 35666655443 233345555555666666555443322 222 33444444457899999999999998877777
Q ss_pred HhhcCCCCCeeEEeec---cCcc--ccc---CC----Ccccc-----C--cccccCCC-CCCCCCCCCCCeeeecHHHHH
Q 015407 257 LVRHRSKPRVYIGCMK---SGPV--LNQ---KG----VRYHE-----P--EYWKFGEA-GNRYFRHATGQLYAISKDLAA 316 (407)
Q Consensus 257 L~~~~~~~~lYiG~~~---~gpv--~r~---~~----~Kw~~-----p--~~w~fgd~-~~~Yp~y~~G~gYvLS~dla~ 316 (407)
+......+.+.+|... .+.. .+. .. -.|.. + ....+.++ .....+++.|++.++++++..
T Consensus 218 l~~l~~~~~~vv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~ 297 (570)
T 2d7i_A 218 LDRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKRIPIPPELQKADPSDPFESPVMAGGLFAVDRKWFW 297 (570)
T ss_dssp HHHHHHCTTEEEEEEEEEECTTTCCEECCTTSSCEEEECTTCCEEEECCCTTTCCSSTTSCEECSSCCSSSEEEEHHHHH
T ss_pred HHHHHhCCCEEEeeeeeccCCCchhhccccCCcccccccccccccccccchhhhccCCCcceecccccceEEEEEHHHHH
Confidence 7655433444444321 1100 000 00 00100 0 00000000 011234578999999999998
Q ss_pred HHHHhccccCCCCCchHHHHHHH--hcCCCee
Q 015407 317 YISINQHVLHKYANEDVSLGSWF--IGLDVEH 346 (407)
Q Consensus 317 ~I~~~~~~l~~~~~EDV~vG~~l--~~l~V~~ 346 (407)
.|---...+..+..||+-+..=+ .|..+..
T Consensus 298 ~iGgfDe~~~~~g~ED~dl~~Rl~~~G~~i~~ 329 (570)
T 2d7i_A 298 ELGGYDPGLEIWGGEQYEISFKVWMCGGRMED 329 (570)
T ss_dssp HTTSSCTTCCSSSSHHHHHHHHHHHTTCEEEE
T ss_pred hcCCCCCcccccCcchHHHHHHHHhCCCeEEE
Confidence 87543334444457999887555 4444443
No 4
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=91.70 E-value=4.8 Score=36.05 Aligned_cols=117 Identities=9% Similarity=-0.034 Sum_probs=67.2
Q ss_pred HHHHHHHhcCCcceEEEeCCceEecHHHHHHHHhhcCC--CCCeeEEeec----c--CcccccCCCccccCcccccCCCC
Q 015407 225 IYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRS--KPRVYIGCMK----S--GPVLNQKGVRYHEPEYWKFGEAG 296 (407)
Q Consensus 225 ~~~~wa~~~~~a~f~lKvDDDvfVni~~L~~~L~~~~~--~~~lYiG~~~----~--gpv~r~~~~Kw~~p~~w~fgd~~ 296 (407)
..++.+.+..+.+|++.+|||.++.++.|...+..... .-.+..|.+. . +.++ ..+..|.. .+ .
T Consensus 78 ~a~N~gi~~a~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~~-~~---~ 149 (255)
T 1qg8_A 78 ALINQAIEMAEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSASKTYHLNENRDIV----KETVRPAA-QV---T 149 (255)
T ss_dssp HHHHHHHHHCCCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEEEEEEEEEEC---CEE----EEEEECCC-SC---B
T ss_pred HHHHHHHHHcCCCEEEEeCCCCccChHHHHHHHHHHHhCCCceEEEeceEEEEeCCCCcch----hhccCchH-HH---H
Confidence 45566666668999999999999998888777765532 2334434331 1 1111 01112211 00 1
Q ss_pred CCCCCCCCCCeeeecHHHHHHHH-Hhc----cccCCCCCchHHHHHHHhcCC-CeeecC
Q 015407 297 NRYFRHATGQLYAISKDLAAYIS-INQ----HVLHKYANEDVSLGSWFIGLD-VEHIDD 349 (407)
Q Consensus 297 ~~Yp~y~~G~gYvLS~dla~~I~-~~~----~~l~~~~~EDV~vG~~l~~l~-V~~id~ 349 (407)
.....+..|++.++.++++..+- .-. ........||..+..-+...+ +..+++
T Consensus 150 ~~~~~~~~~~~~~~rr~~~~~~g~~f~~~~~~~~~~~~~eD~~~~~r~~~~g~~~~~~~ 208 (255)
T 1qg8_A 150 WNAPCAIDHCSVMHRYSVLEKVKEKFGSYWDESPAFYRIGDARFFWRVNHFYPFYPLDE 208 (255)
T ss_dssp SCCTTTSCGGGEEEETHHHHHHHHHHSSSSCCCGGGSTTHHHHHHHHHTTTCCBEEEEE
T ss_pred HhhcCCCccceEEEEHHHHHhhcccccccccCCcccchHHHHHHHHHHHHhCCEEEecC
Confidence 12334567999999999999876 220 011224689998876664333 444443
No 5
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=91.19 E-value=4.9 Score=40.70 Aligned_cols=161 Identities=12% Similarity=-0.001 Sum_probs=83.9
Q ss_pred EEEEEEeecCCCCCCchHHHHHHHHhhcCCeeecCCCccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHHHH
Q 015407 177 IIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQT 256 (407)
Q Consensus 177 v~v~FvvG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVni~~L~~~ 256 (407)
..+++|-..|.+ +.+ ....+.+..+..+...+.. - .-.+...+.+....+|++.+|+|..+.++-|..+
T Consensus 99 ~EIIvVDDgS~D--~t~----~~~~~~~~~v~vi~~~~n~---G--~~~A~N~G~~~A~gd~i~flD~D~~~~p~~L~~l 167 (501)
T 2ffu_A 99 KEIILVDDYSND--PED----GALLGKIEKVRVLRNDRRE---G--LMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPL 167 (501)
T ss_dssp EEEEEEECSCSC--THH----HHGGGGBTTEEEEECSSCC---H--HHHHHHHHHHHCCSSEEEECCSSEEECTTCHHHH
T ss_pred eeEEEEECCCCc--hHH----HHHHhcCCCEEEEECCCCc---C--HHHHHHHHHHhcCCCEEEEECCCcccCccHHHHH
Confidence 466666654432 222 2223455566555443322 1 2234455555558999999999999999888887
Q ss_pred HhhcCCCCCeeEEeec---cCccc---------c-----cCCCccc-cCcc-c--ccCCC-CCCCCCCCCCCeeeecHHH
Q 015407 257 LVRHRSKPRVYIGCMK---SGPVL---------N-----QKGVRYH-EPEY-W--KFGEA-GNRYFRHATGQLYAISKDL 314 (407)
Q Consensus 257 L~~~~~~~~lYiG~~~---~gpv~---------r-----~~~~Kw~-~p~~-w--~fgd~-~~~Yp~y~~G~gYvLS~dl 314 (407)
+......+...++... ....+ + ....+|. .+.. . ...++ .....+++.|++.++++++
T Consensus 168 l~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~ 247 (501)
T 2ffu_A 168 LERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFY 247 (501)
T ss_dssp HHHHHHCTTEEEEEEEEEECTTTCCEECBCSSEEEEECTTCCEEEEECCHHHHHHTSSCTTSCEECSSCCSSSEEEEHHH
T ss_pred HHHHHhCCCeEEEeeeccCcCCCceeecCCcccceEeeecCCCccccCCHHHHhhccCCCCCcccCccccceEEEEEHHH
Confidence 7665433333333211 10000 0 0000110 0000 0 00000 1123456789999999999
Q ss_pred HHHHHHhccccCCCCCchHHHHHHH--hcCCCeeec
Q 015407 315 AAYISINQHVLHKYANEDVSLGSWF--IGLDVEHID 348 (407)
Q Consensus 315 a~~I~~~~~~l~~~~~EDV~vG~~l--~~l~V~~id 348 (407)
...+-.-...+..+..||+-+..-+ .|..+..+.
T Consensus 248 ~~~iGgfde~~~~~g~ED~dl~~Rl~~~G~~i~~~p 283 (501)
T 2ffu_A 248 FEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIP 283 (501)
T ss_dssp HHHTTCCCTTCCSSSSHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHhCCCCccccccCcchHHHHHHHHhcCCeEEEcc
Confidence 9887533333444458999887544 455454443
No 6
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=88.90 E-value=8.1 Score=34.07 Aligned_cols=165 Identities=9% Similarity=0.021 Sum_probs=80.2
Q ss_pred cEEEEEEeecCCCCCCchHHHHHHHHhhcCCeeecCCCccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHHH
Q 015407 176 GIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLGQ 255 (407)
Q Consensus 176 ~v~v~FvvG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVni~~L~~ 255 (407)
.+.++.|-..|++ .....+++-.+++..|..+. .+ |.- .-.+.+.+.+....+|++.+|+|.++.++.|..
T Consensus 34 ~~eiIvvDd~S~d---~t~~~~~~~~~~~~~i~~i~-~~---n~G--~~~a~N~g~~~a~g~~i~~lD~Dd~~~~~~l~~ 104 (240)
T 3bcv_A 34 DIEIILIDDESPD---NCPKICDDYAAQYPNIKVIH-KK---NAG--LGMACNSGLDVATGEYVAFCDSDDYVDSDMYMT 104 (240)
T ss_dssp SEEEEEEECCCSS---SHHHHHHHHHHHCSSEEEEE-CC---CCC--HHHHHHHHHHHCCSSEEEECCTTCCCCTTHHHH
T ss_pred CeEEEEEECCCCc---CHHHHHHHHHhhCCCEEEEE-CC---CCC--hHHHHHHHHHHcCCCEEEEECCCCcCCHHHHHH
Confidence 5677766654432 23334444445566665554 22 222 123445555556889999999999999888877
Q ss_pred HHhhcCC-CCCeeEEeec----cCc----ccccC-CCccccCcc---c---ccCCCCCCC---C-CCCCCCeeeecHHHH
Q 015407 256 TLVRHRS-KPRVYIGCMK----SGP----VLNQK-GVRYHEPEY---W---KFGEAGNRY---F-RHATGQLYAISKDLA 315 (407)
Q Consensus 256 ~L~~~~~-~~~lYiG~~~----~gp----v~r~~-~~Kw~~p~~---w---~fgd~~~~Y---p-~y~~G~gYvLS~dla 315 (407)
++..... ...+.+|... .+. +...+ ...++.... + .++ ....+ + ...+|++.++.++++
T Consensus 105 l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~rr~~~ 183 (240)
T 3bcv_A 105 MYNVAQKYTCDAVFTGLKRITMAGIPTGTVTHQKEFKLYKNKNEIHTLLKDLIA-SDPYAREERAIQVSAKVVLYRRNLI 183 (240)
T ss_dssp HHHHHHHHTCSEEEC--------------------CEEECSHHHHHHHHGGGTS-SCHHHHHHHHHHHTCSCEEEEHHHH
T ss_pred HHHHHHhcCCCEEEEeeEEEccCCccccccccccccccccCHHHHHHHHHHHhh-cchhhccccccccchhheeeeHHHH
Confidence 7765532 3344434321 111 10000 001111100 0 000 00000 0 013578889999999
Q ss_pred HHHHHhccccCCCCCchHHHHHHHh--cCCCeeecCC
Q 015407 316 AYISINQHVLHKYANEDVSLGSWFI--GLDVEHIDDR 350 (407)
Q Consensus 316 ~~I~~~~~~l~~~~~EDV~vG~~l~--~l~V~~id~~ 350 (407)
+.+-........+..||+.+..-+. |..+..+++.
T Consensus 184 ~~~g~~f~~~~~~~~eD~~~~~r~~~~g~~i~~~~~~ 220 (240)
T 3bcv_A 184 EKKHLRFVSERILPSEDLIFNVDVLANSNIVCVLPQT 220 (240)
T ss_dssp HHTTCCCCCTTTCTTHHHHHHHHHHTTCSCEEECC--
T ss_pred HHcCCccCCCCCccCCCHHHHHHHHHhCCEEEEECCC
Confidence 8853111111123569999887554 4455555554
No 7
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=88.57 E-value=9.1 Score=40.78 Aligned_cols=122 Identities=16% Similarity=0.147 Sum_probs=66.7
Q ss_pred HHHHHHHhcCCcceEEEeCCceEecHHHHHHHHhhcCCCC-CeeEE-eec--cCc--------ccccCCCccc-cCccc-
Q 015407 225 IYFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKP-RVYIG-CMK--SGP--------VLNQKGVRYH-EPEYW- 290 (407)
Q Consensus 225 ~~~~wa~~~~~a~f~lKvDDDvfVni~~L~~~L~~~~~~~-~lYiG-~~~--~gp--------v~r~~~~Kw~-~p~~w- 290 (407)
.+++.|....+++|++..|||+.+.++.|..++......+ ...+| .+. ..+ .+......|. .+...
T Consensus 258 ~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~~~~~vg~~il~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 337 (657)
T 4fix_A 258 RVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHRFAKAPMLVGGQMLNLQEPSHLHIMGEVVDRSIFMWTAAPHAEY 337 (657)
T ss_dssp HHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHHHHBSSCCEEEEEEEETTSTTEECCSCEEEETTTTEEEECTTCCS
T ss_pred HHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHHHhCCCcEEEEeEEecCCCCceeeecccEeccccccccccccccc
Confidence 4556665444889999999999999988888776543222 22344 332 111 1100000000 00000
Q ss_pred --ccCC-------------CCCCCCCCCCCCeeeecHHHHHHHHHhccccCCCCCchHHHHHHHh--cCCCeeec
Q 015407 291 --KFGE-------------AGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFI--GLDVEHID 348 (407)
Q Consensus 291 --~fgd-------------~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~--~l~V~~id 348 (407)
.|+. .......|++|.+.++.+++.+.+---.. -.+..||+-++.=+. |..+-.++
T Consensus 338 ~~~f~~~~l~~~~~~~~~~~~~~~v~~~~g~~~lirr~v~~~vGgfd~--~F~~~ED~Dl~lR~~~~G~ki~~~p 410 (657)
T 4fix_A 338 DHDFAEYPLNDNNSRSKLLHRRIDVDYNGWWTCMIPRQVAEELGQPLP--LFIKWDDADYGLRAAEHGYPTVTLP 410 (657)
T ss_dssp CEETTTSCSSCSSHHHHGGGBCCCCSBCCTTEEEEEHHHHHHHCSCCS--CSSSSHHHHHHHHHHHTTCCEEEEE
T ss_pred cccccccccccccccccccccceeccccchhHhHhhHHHHHHhCCChh--HhccCcHHHHHHHHHHcCCeEEEEC
Confidence 0000 01123457899999999999998642221 223579999987664 44444433
No 8
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=83.12 E-value=13 Score=38.52 Aligned_cols=123 Identities=15% Similarity=0.153 Sum_probs=65.8
Q ss_pred HHHHHHhcCCcceEEEeCCceEecHHHHHHHHhhcCCCCC-eeEEeec---cCc--c---------ccc-----------
Q 015407 226 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPR-VYIGCMK---SGP--V---------LNQ----------- 279 (407)
Q Consensus 226 ~~~wa~~~~~a~f~lKvDDDvfVni~~L~~~L~~~~~~~~-lYiG~~~---~gp--v---------~r~----------- 279 (407)
.++.+.+..+.+|++.+|+|..+.++.|..++......+. ..+|... .+. . .+.
T Consensus 165 a~N~g~~~a~g~~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (625)
T 2z86_A 165 VRNLGLRAAKYNYVAILDCDMAPNPLWVQSYMELLAVDDNVALIGPRKYIDTSKHTYLDFLSQKSLINEIPEIITNNQVA 244 (625)
T ss_dssp HHHHHHHHCCSSEEEEECTTEEECTTHHHHHHHHHHHCTTEEEECCEEEECCTTCCHHHHHHSTTGGGTSCC--------
T ss_pred HHHHHHHhCCcCEEEEECCCCCCCHHHHHHHHHHHhcCCceEEEEeeeeccCcccchhhcccchHHhhhcchhccCCchh
Confidence 4455555568999999999999998888877766542232 2334321 110 0 000
Q ss_pred ------CCCccccCccc---ccCCCCCCCCCCCCCCeeeecHHHHHHHHHhccccCCCCCchHHHHHHHh--cCCCeeec
Q 015407 280 ------KGVRYHEPEYW---KFGEAGNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFI--GLDVEHID 348 (407)
Q Consensus 280 ------~~~Kw~~p~~w---~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~--~l~V~~id 348 (407)
....|...... .+. .......++.|++.+++++++..+---...+..+..||.-++.=+. |..+..++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~rr~~l~~iGgfde~~~~~g~ED~dl~~Rl~~~G~~i~~~p 323 (625)
T 2z86_A 245 GKVEQNKSVDWRIEHFKNTDNLR-LCNTPFRFFSGGNVAFAKKWLFRAGWFDEEFTHWGGEDNEFGYRLYREGCYFRSVE 323 (625)
T ss_dssp -------CCCTHHHHHHHTTTTT-TCSCGGGGCCTTEEEEETHHHHHHCCCCTTCSSCCCHHHHHHHHHHHTTCEEEECG
T ss_pred hhhccCCccccchhhhccccccc-ccCCceeEEeeceeeeEHHHHHHhCCCccccccCCcchhhhhhhHHhCCceEEEcc
Confidence 00011100000 000 0011123478999999999999874322333344579999987664 44344444
Q ss_pred C
Q 015407 349 D 349 (407)
Q Consensus 349 ~ 349 (407)
+
T Consensus 324 ~ 324 (625)
T 2z86_A 324 G 324 (625)
T ss_dssp G
T ss_pred c
Confidence 3
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=73.36 E-value=39 Score=34.84 Aligned_cols=157 Identities=11% Similarity=0.052 Sum_probs=79.3
Q ss_pred CcEEEEEEeecCCCCCCchHHHHHHHHhhcCCeeecCCCccccchhHHHHHHHHHHHhcCCcceEEEeCCceEecHHHHH
Q 015407 175 KGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDDVHVNIATLG 254 (407)
Q Consensus 175 ~~v~v~FvvG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvfVni~~L~ 254 (407)
..+.++.|-..|.+ .....+.+-...+..|..+. .+ |.- .-.+++.+.+....+|++.+|+|.++.++.|.
T Consensus 403 ~~~eiivvdd~S~d---~t~~~~~~~~~~~~~i~~~~-~~---n~G--~~~a~n~g~~~a~g~~i~~ld~D~~~~~~~l~ 473 (625)
T 2z86_A 403 TDLEVCICDDGSTD---DTLRILQEHYANHPRVRFIS-QK---NKG--IGSASNTAVRLCRGFYIGQLDSDDFLEPDAVE 473 (625)
T ss_dssp CSEEEEEEEESCSS---SHHHHHHHHHTTCTTEEEEE-EC---CCC--HHHHHHHHHHHCCSSEEEECCTTCEECTTHHH
T ss_pred CCeEEEEEECcCCh---hHHHHHHHHHhhCCcEEEEe-CC---CCC--HHHHHHHHHHhcCCCEEEEECCCcccChhHHH
Confidence 35677777665542 22333433344555555553 22 221 22345555555688999999999999998888
Q ss_pred HHHhhcCCCC--CeeEEeec----cCcccccCCCccccCcccccCCCCCCCCCCCCCCeeeecHHHHHHHHHhccccCCC
Q 015407 255 QTLVRHRSKP--RVYIGCMK----SGPVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQHVLHKY 328 (407)
Q Consensus 255 ~~L~~~~~~~--~lYiG~~~----~gpv~r~~~~Kw~~p~~w~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~ 328 (407)
.++......+ .+..+... .+..+.. . +..+. +. .......++.|.+.++.+++...+---.. ...
T Consensus 474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~--~~~~~-~~---~~~~~~~~~~~~~~~~~r~~~~~~ggfd~--~~~ 544 (625)
T 2z86_A 474 LCLDEFRKDLSLACVYTTNRNIDREGNLISN-G--YNWPI-YS---REKLTSAMICHHFRMFTARAWNLTEGFNE--SIS 544 (625)
T ss_dssp HHHHHHHHCTTCSEEEEEEEEECTTSCEEEE-C--CCCSS-CC---HHHHTTSCCCCSCEEEEHHHHTTTTCCCS--SCS
T ss_pred HHHHHHHhCCCeeEEEeeeEEECCCCCEecc-C--ccccc-CC---HHHHhhcccCCceEEEEHHHHHHhCCCCC--ccC
Confidence 8776542222 22222211 1211110 0 01111 00 00012234567888999987655422111 223
Q ss_pred CCchHHHHHHHhcCC-CeeecC
Q 015407 329 ANEDVSLGSWFIGLD-VEHIDD 349 (407)
Q Consensus 329 ~~EDV~vG~~l~~l~-V~~id~ 349 (407)
..||.-+..-+...| +.+++.
T Consensus 545 ~~eD~dl~~r~~~~g~~~~~~~ 566 (625)
T 2z86_A 545 NAVDYDMYLKLSEVGPFKHINK 566 (625)
T ss_dssp SCHHHHHHHHHTTTSCEEEEEE
T ss_pred ChHHHHHHHHHHHhCCEEEeCC
Confidence 569998876665444 444443
No 10
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=70.87 E-value=63 Score=34.97 Aligned_cols=128 Identities=14% Similarity=0.051 Sum_probs=69.6
Q ss_pred HHHHHHhcCCcceEEEeCCceEecHHHHHHHHhhcCCCCC--eeEEeec--c-Cccccc--CCCcccc-CcccccCC--C
Q 015407 226 YFATAVSLWDADFYVKVDDDVHVNIATLGQTLVRHRSKPR--VYIGCMK--S-GPVLNQ--KGVRYHE-PEYWKFGE--A 295 (407)
Q Consensus 226 ~~~wa~~~~~a~f~lKvDDDvfVni~~L~~~L~~~~~~~~--lYiG~~~--~-gpv~r~--~~~Kw~~-p~~w~fgd--~ 295 (407)
.++.+.+..+.+|++.+|+|+.+.++.|...+......++ +..|... + .+..+. ....+.. .+.++ .. .
T Consensus 229 alN~gl~~a~gd~Il~lDaD~~~~pd~L~~lv~~~~~dp~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 307 (802)
T 4hg6_A 229 NMSAALERLKGELVVVFDADHVPSRDFLARTVGYFVEDPDLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFY-GKIHR 307 (802)
T ss_dssp HHHHHHHHCCCSEEEECCTTEEECTTHHHHHHHHHHHSSSCCEEECCCCBSSCCHHHHHHTCCTTSCCTTHHHH-HTHHH
T ss_pred HHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHHhcCCCeEEEeccEEEeCCchHhhhhhHHhhhhHHHHHHH-HHHHh
Confidence 4566666668999999999999999888888776532232 2222211 1 111000 0000000 00000 00 0
Q ss_pred --CCCCCCCCCCCeeeecHHHHHHHHHhccccCCCCCchHHHHHHHhcC--CCeeecCCCcccCCC
Q 015407 296 --GNRYFRHATGQLYAISKDLAAYISINQHVLHKYANEDVSLGSWFIGL--DVEHIDDRRLCCGTP 357 (407)
Q Consensus 296 --~~~Yp~y~~G~gYvLS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~l--~V~~id~~~f~~~~~ 357 (407)
...-.+++.|++.++.+++++.+---. .....||..++.-+... .+..+++.......|
T Consensus 308 ~~~~~~~~~~~G~~~~~Rr~al~~vGgf~---~~~~~ED~~l~~rl~~~G~ri~~~~~~~~~~~~p 370 (802)
T 4hg6_A 308 GLDRWGGAFFCGSAAVLRRRALDEAGGFA---GETITEDAETALEIHSRGWKSLYIDRAMIAGLQP 370 (802)
T ss_dssp HHHHTTCCCCCSSSEEEEHHHHHHHTTCC---CSSSSHHHHHHHHHHTTTCCEEECCCCCEEECCC
T ss_pred hHhhcCCceecccchhhhHHHHHHcCCcC---CCCcchHHHHHHHHHHcCCeEEEecCCEEEecCC
Confidence 000113467999999999999863211 22236999999888544 455566655555433
No 11
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=38.06 E-value=72 Score=31.11 Aligned_cols=85 Identities=16% Similarity=0.158 Sum_probs=47.2
Q ss_pred HHHHHHHhcCCcceEEEeCCceEecHHHH---HHHHhhcCCCCCeeEEeecc--CcccccCCCccccCcccccCCCCCCC
Q 015407 225 IYFATAVSLWDADFYVKVDDDVHVNIATL---GQTLVRHRSKPRVYIGCMKS--GPVLNQKGVRYHEPEYWKFGEAGNRY 299 (407)
Q Consensus 225 ~~~~wa~~~~~a~f~lKvDDDvfVni~~L---~~~L~~~~~~~~lYiG~~~~--gpv~r~~~~Kw~~p~~w~fgd~~~~Y 299 (407)
.++.++.+..++++++.+|||..+.++=+ .+.|......++++ |+.+ .+....... -..+...|+.
T Consensus 89 ~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~~~l~~y~~D~~I~--~ISa~n~~g~~~~~~-~~~~~~lyrs------ 159 (343)
T 1fo8_A 89 WALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADPSLW--CVSAWNDNGKEQMVD-SSKPELLYRT------ 159 (343)
T ss_dssp HHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHHHHHHHHHCTTEE--EEESCCTTCBGGGSC-TTCTTCEEEE------
T ss_pred HHHHHHHHhccCCEEEEEcCCCeECHHHHHHHHHHHHHhhcCCcEE--EEecccCcccccccc-ccCcceEEee------
Confidence 45555555557999999999999999655 33333333456665 3321 110000000 0112222321
Q ss_pred CCCCCCCeeeecHHHHHHHH
Q 015407 300 FRHATGQLYAISKDLAAYIS 319 (407)
Q Consensus 300 p~y~~G~gYvLS~dla~~I~ 319 (407)
.|..|-|+++++++-+.+-
T Consensus 160 -~~f~~wGWa~wr~~W~e~~ 178 (343)
T 1fo8_A 160 -DFFPGLGWLLLAELWAELE 178 (343)
T ss_dssp -SSCCCSSEEEEHHHHHHHG
T ss_pred -cCCCchhhhhcHHHHHHHh
Confidence 2345789999999987654
No 12
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=35.95 E-value=2.5e+02 Score=25.48 Aligned_cols=133 Identities=12% Similarity=-0.022 Sum_probs=71.7
Q ss_pred HHHHHHHhhcCCeeecCCCccccchhHHHHHHHHHHHhcCCcceEEEeCCc---eEecHHHHHHHHhhcCCCCCeeEEee
Q 015407 195 RAIEAEDRKHGDFMRLDHVEGYLELSAKTKIYFATAVSLWDADFYVKVDDD---VHVNIATLGQTLVRHRSKPRVYIGCM 271 (407)
Q Consensus 195 ~~L~~E~~~~~DIL~ld~~DsY~nLt~Kt~~~~~wa~~~~~a~f~lKvDDD---vfVni~~L~~~L~~~~~~~~lYiG~~ 271 (407)
-.|..+..+.+==+++...++.-.... -...=.|+ ...++++++.+|-| +-.+++.+..+|+.. .++.+|.-
T Consensus 15 l~l~~~l~~~gi~~~l~~~~SlI~raR-N~lv~~Fl-~~~~~dhllfIDAD~~~I~FdPe~V~rLl~~g---~DVV~GsY 89 (203)
T 2c0n_A 15 LPLIDFLVKNDIEYVILSRRNHVAVQR-EIALDMFL-EMKDYDTLAFLDEDVVPIEIDFQKVEAKFNEG---YDVVCGYY 89 (203)
T ss_dssp HHHHHHHHHTTCCEEEECCCSCHHHHH-HHHHHHHH-HCTTCCEEEEECTTEEEEECCHHHHHHHHHHT---CSEEEEEC
T ss_pred hHHHHHHHhCCCeEEEEccccchHHHH-HHHHHHHH-hcCCCCEEEEEeCCCCccccCHHHHHHHHhCC---CCEEEEEe
Confidence 345555555554445554433221111 11111133 35689999999999 999999999999553 46777763
Q ss_pred --ccCcccccCCCccccCcccccCCCCCCCCCCCCCCeeeecHHHHHHHHHhcc------ccCCCCCchHHHHHHH
Q 015407 272 --KSGPVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQH------VLHKYANEDVSLGSWF 339 (407)
Q Consensus 272 --~~gpv~r~~~~Kw~~p~~w~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~~~~------~l~~~~~EDV~vG~~l 339 (407)
+...-. ....+.|.-. + ...=-.||+.|.-+++|.+...|....- ..+..--|||++=.-+
T Consensus 90 p~K~~~~~-s~~a~~y~~~---i---~~~~V~d~~tGF~lIkR~V~e~L~~p~fl~~~~~e~~~~~gEdv~F~~~~ 158 (203)
T 2c0n_A 90 YLKTLRGY-SVYRKDWEKE---I---FDGEVNGCGLGFTFIKREFLEKIKRPAFLAFKPIESPHWIGEDVYFFSTH 158 (203)
T ss_dssp BCTTSSSB-SEESSSBCSS---C---CCEECSEECSSEEEEEHHHHTTSCSSCCCC---------CCHHHHHHHHH
T ss_pred eccCCCcc-chHHHHHHHh---c---cCceeeeccccEEEEhHHHHHHHhhhhhhcCChhhhccccCCceEEEecc
Confidence 221100 0001111111 1 0112346888999999999988755421 1222345888875544
No 13
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=32.77 E-value=94 Score=30.83 Aligned_cols=170 Identities=8% Similarity=-0.058 Sum_probs=84.1
Q ss_pred cEEEEEEeecCCCCCCchHHHHHHHHh-hcCC-eeecCCCc-c--ccchhHHHHHHHHHHHhcCCcceEEEeCCceE-ec
Q 015407 176 GIIMRFVIGHSATSGGILDRAIEAEDR-KHGD-FMRLDHVE-G--YLELSAKTKIYFATAVSLWDADFYVKVDDDVH-VN 249 (407)
Q Consensus 176 ~v~v~FvvG~s~~~~~~~~~~L~~E~~-~~~D-IL~ld~~D-s--Y~nLt~Kt~~~~~wa~~~~~a~f~lKvDDDvf-Vn 249 (407)
...+++|-+-|++...++-+.+..+.. .++. ++...... . -.....=...+|+||....+.++++.+|-|.- .+
T Consensus 28 ~~EIIVVDDGStD~T~eia~~la~~~~~~~g~~vi~~~~~r~~~~n~GkG~Al~~G~~~Al~~a~gd~vv~mDADlq~~~ 107 (397)
T 2bo4_A 28 RVHEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITSFG 107 (397)
T ss_dssp TCCEEEEEESSCCHHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSHHHHHHHHHHHHHHHCCCSEEEECCTTCSSCC
T ss_pred CeEEEEEECcCCccHHHHHHHhhhhcccccCCeEEEEecccCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCCC
Confidence 457888888776321111122222332 3444 33332120 1 12344456678888873358899999999994 78
Q ss_pred HHHHHHHHhhcCCCCCeeEEeecc---CcccccCCCccccCcccccCCCCCCCCCCCCCCeeeecHHHHHHHHHhc--cc
Q 015407 250 IATLGQTLVRHRSKPRVYIGCMKS---GPVLNQKGVRYHEPEYWKFGEAGNRYFRHATGQLYAISKDLAAYISINQ--HV 324 (407)
Q Consensus 250 i~~L~~~L~~~~~~~~lYiG~~~~---gpv~r~~~~Kw~~p~~w~fgd~~~~Yp~y~~G~gYvLS~dla~~I~~~~--~~ 324 (407)
+.-+..++......-.+.+|.... +..+.....+..... .+.+-.........++.+++++++++.+.... ..
T Consensus 108 P~~i~~Ll~~l~~g~D~V~g~~~r~~~~~~~~~~~~~~ll~~--~~~~~~~~~i~dp~sG~~a~~R~vl~~l~~~~~~~~ 185 (397)
T 2bo4_A 108 PDWITKAEEAADFGYGLVRHYFPRASTDAMITWMITRTGFAL--LWPHTELSWIEQPLGGELLMRREVAAMLYEDERVRR 185 (397)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCCTTSCHHHHHTHHHHHHH--HCTTSSGGGCSCTTCCCEEEEHHHHHHHHHCHHHHT
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccccCCcHHHHHHHHHHHHH--HHHHhhccccccCCcccEEEeHHHHHHHhhhcccCc
Confidence 887777776543323455665321 111100000100000 00000001222335777899999999885321 12
Q ss_pred cCCCCCchHHHHHHH--hcCCCeeec
Q 015407 325 LHKYANEDVSLGSWF--IGLDVEHID 348 (407)
Q Consensus 325 l~~~~~EDV~vG~~l--~~l~V~~id 348 (407)
.+.|. .|+.+-..+ .|+.|..+.
T Consensus 186 ~~~fg-~eiel~~~a~~~G~rI~EVp 210 (397)
T 2bo4_A 186 RSDWG-IDTLYTFVTVQQGVSIYECY 210 (397)
T ss_dssp CCSTT-HHHHHHHHHHHTTCCEEEEE
T ss_pred CCCcc-hHHHHHHHHHHcCCEEEEEE
Confidence 23343 466665544 355565443
No 14
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=32.66 E-value=50 Score=25.91 Aligned_cols=74 Identities=26% Similarity=0.281 Sum_probs=44.3
Q ss_pred EECCCCCHHHHHHHHHHHHhhhhhhhhcccCCcEEEEEEeecCCCCCCchHHHHHHHHhhcCCeeecCCCccccchhHHH
Q 015407 144 INTAFSSRKRRDSVRATWMLQGEKRKRLEEEKGIIMRFVIGHSATSGGILDRAIEAEDRKHGDFMRLDHVEGYLELSAKT 223 (407)
Q Consensus 144 V~Sa~~~~~rR~aIR~TW~~~~~~l~~l~~~~~v~v~FvvG~s~~~~~~~~~~L~~E~~~~~DIL~ld~~DsY~nLt~Kt 223 (407)
|.|+.++.+-|+.|..- .. +..-.++||-|.+.+. -...+.|+.+-|=-.-+=-..+-++|+..+
T Consensus 31 irtatssqdirdiiksm--kd---------ngkplvvfvngasqnd----vnefqneakkegvsydvlkstdpeeltqrv 95 (112)
T 2lnd_A 31 IRTATSSQDIRDIIKSM--KD---------NGKPLVVFVNGASQND----VNEFQNEAKKEGVSYDVLKSTDPEELTQRV 95 (112)
T ss_dssp EEEECSHHHHHHHHHHH--TT---------CCSCEEEEECSCCHHH----HHHHHHHHHHHTCEEEEEECCCHHHHHHHH
T ss_pred eeeccchhhHHHHHHHH--Hh---------cCCeEEEEecCccccc----HHHHHHHHHhcCcchhhhccCCHHHHHHHH
Confidence 46677778888887642 11 2334678999987532 234556666554221111122345799999
Q ss_pred HHHHHHHHh
Q 015407 224 KIYFATAVS 232 (407)
Q Consensus 224 ~~~~~wa~~ 232 (407)
..|++.|-.
T Consensus 96 reflktags 104 (112)
T 2lnd_A 96 REFLKTAGS 104 (112)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHhccc
Confidence 999998753
No 15
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=26.05 E-value=73 Score=22.59 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=20.5
Q ss_pred hhHHHHHhhhhhHHHHHHHHHHHHh
Q 015407 88 KTHNAIQTLDKTISNLEMELAAARA 112 (407)
Q Consensus 88 ~~~~~~~~~~~~i~~le~~l~~~~~ 112 (407)
.....++.|+|+|..||.+|..++.
T Consensus 9 fAERsV~KLek~ID~LEdeL~~eKe 33 (52)
T 2z5i_A 9 HLENEVARLKKLVDDLEDELYAQKL 33 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3445778899999999999998874
No 16
>1vf5_H Protein PET N; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.27.1 PDB: 2d2c_H* 2e74_H* 2e75_H* 2e76_H* 2zt9_H*
Probab=25.41 E-value=47 Score=20.89 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.0
Q ss_pred cchhHHHHHHHHHHHhHHHhccc
Q 015407 15 VSQKWTFLLCLGCFCAGMLFTNR 37 (407)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~ 37 (407)
++--|+.++.+|+|-..+.+-||
T Consensus 4 vsl~WaalmvvftfSlslVVWGR 26 (29)
T 1vf5_H 4 DVLGWVALLVVFTWSIAMVVWGR 26 (29)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhheeeeEEEEec
Confidence 46679999999999999998877
No 17
>1q90_N Cytochrome B6F complex subunit PETN; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.27.1
Probab=22.49 E-value=47 Score=21.20 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.1
Q ss_pred cchhHHHHHHHHHHHhHHHhccc
Q 015407 15 VSQKWTFLLCLGCFCAGMLFTNR 37 (407)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~ 37 (407)
++--|+.++.+|+|-..+.|-||
T Consensus 6 vsl~WaalmvvfTfSlslVVWGR 28 (31)
T 1q90_N 6 VQIGWAATCVMFSFSLSLVVWGR 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHhheeeEEEEEec
Confidence 45679999999999999998887
Done!