Query 015408
Match_columns 407
No_of_seqs 360 out of 2111
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 12:06:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015408.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015408hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 4E-52 1.4E-56 398.4 25.0 253 133-406 5-279 (297)
2 2lck_A Mitochondrial uncouplin 100.0 5.3E-52 1.8E-56 398.6 21.7 250 137-407 3-268 (303)
3 2lck_A Mitochondrial uncouplin 100.0 4.5E-44 1.5E-48 343.4 12.1 243 59-313 20-287 (303)
4 1okc_A ADP, ATP carrier protei 100.0 4.6E-42 1.6E-46 328.5 15.6 250 45-311 14-296 (297)
5 2acm_A Mucin-1; auto-catalytic 12.9 40 0.0014 22.8 -0.2 20 170-189 40-59 (66)
6 3vjj_A P9-1; 3.00A {Rice black 12.0 94 0.0032 28.0 1.9 36 353-393 273-308 (368)
7 3tgu_G UQCRQ, mitochondrial ub 10.9 1.7E+02 0.0057 21.2 2.7 35 279-313 33-67 (81)
8 2khf_A PLNJ; anti-microbial, b 8.6 1.4E+02 0.0049 15.9 1.1 22 381-406 3-24 (26)
9 1y9i_A Low temperature require 8.3 5E+02 0.017 21.7 5.0 44 201-244 111-158 (178)
10 2a3d_A Protein (de novo three- 7.7 3.1E+02 0.011 18.2 2.7 13 155-167 10-22 (73)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=4e-52 Score=398.37 Aligned_cols=253 Identities=30% Similarity=0.487 Sum_probs=223.5
Q ss_pred CChHHHHHHHHHHHHHHHhhhccHHHHHHHHHhcC---------CCCCHHHHHHHHHhhcCccccccccHHHHhhhhhhh
Q 015408 133 YNTTKHLFAGAVAAAVSRTCVAPLERLKLEYIVRG---------EQKSLFDLIKTIGATQGLKGFWKGNFVNILRTAPFK 203 (407)
Q Consensus 133 ~~~~~~~~aG~~ag~~~~~i~~Pld~vk~r~Q~~~---------~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 203 (407)
.+.+.++++|++|++++.++++|+|+||+|+|++. .|+++++++++|+++||++|||||+.+++++.+|..
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 45678999999999999999999999999999964 478999999999999999999999999999999999
Q ss_pred hhhhHhHHHHHHHHhhhcCCCCC---ChHHHHHHHHHHHHHHHhhhchHHHhhhhhccCCC-----CCCCcHHHHHHHHH
Q 015408 204 AINFYAYDTYRNQLLKLSGKDKS---TNFERFVAGAAAGITATLLCLPLDTIRTVMVAPGG-----EALGGLIGAFRHMI 275 (407)
Q Consensus 204 ~~~f~~y~~~k~~l~~~~~~~~~---~~~~~~~ag~~ag~~~~~v~~Pldviktrlq~~~~-----~~~~~~~~~~~~I~ 275 (407)
+++|.+||.+|+.+.+....... .....+++|++||+++.++++|+|+||+|+|++.. ..|.++++++++|+
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~ 164 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF 164 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHH
Confidence 99999999999965433221111 23567899999999999999999999999999743 46899999999999
Q ss_pred HhcCccccccchHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchhhhhhcccccchhhhhhhccchHHHHHHHHHHHHHH
Q 015408 276 QTEGFFSLYKGLVPSIVSMAPSGAVFYGVYDILKSAYLHSPEGKKRLQNMRKDQDLSALEQLELGPVRTLLYGAIAGCCS 355 (407)
Q Consensus 276 ~~eG~~glyrG~~~~l~r~~~~~~i~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~iAg~~a 355 (407)
++||++|||||+.+++++.+|+.+++|.+||.+|+.+.+.. ..+....+++|++||+++
T Consensus 165 ~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~---------------------~~~~~~~~~~g~~ag~~a 223 (297)
T 1okc_A 165 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK---------------------NVHIIVSWMIAQTVTAVA 223 (297)
T ss_dssp HHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG---------------------CSCHHHHHHHHHHHHHHH
T ss_pred HhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC---------------------CccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998653210 134567889999999999
Q ss_pred HHhhcHHHHHHHHhhcccCC-----CcccHHHHHHHHHHhcchhhccccccccccc
Q 015408 356 EAATYPFEVVRRQLQMQVCA-----TKLNALATCVKIVEQGGVPALYAGLTPSLLQ 406 (407)
Q Consensus 356 ~~vt~PlDvIktR~Q~~~~~-----~~~~~~~~~~~i~r~eGi~glyrGl~p~llr 406 (407)
+++++|+||||+|||++... .+.+.++|+++|+|+||++|||||+.|+++|
T Consensus 224 ~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r 279 (297)
T 1okc_A 224 GLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLR 279 (297)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHH
T ss_pred HHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHh
Confidence 99999999999999987532 4679999999999999999999999999987
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=5.3e-52 Score=398.64 Aligned_cols=250 Identities=20% Similarity=0.341 Sum_probs=226.8
Q ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHHhcC------------CCCCHHHHHHHHHhhcCccccccccHHHHhhhhhhhh
Q 015408 137 KHLFAGAVAAAVSRTCVAPLERLKLEYIVRG------------EQKSLFDLIKTIGATQGLKGFWKGNFVNILRTAPFKA 204 (407)
Q Consensus 137 ~~~~aG~~ag~~~~~i~~Pld~vk~r~Q~~~------------~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 204 (407)
.++++|++|++++.++++|+|+||+|+|++. .|+++++++++|+++||++|||||+.+++++.+|+.+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 3689999999999999999999999999864 4789999999999999999999999999999999999
Q ss_pred hhhHhHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHHhhhchHHHhhhhhccCCC----CCCCcHHHHHHHHHHhcCc
Q 015408 205 INFYAYDTYRNQLLKLSGKDKSTNFERFVAGAAAGITATLLCLPLDTIRTVMVAPGG----EALGGLIGAFRHMIQTEGF 280 (407)
Q Consensus 205 ~~f~~y~~~k~~l~~~~~~~~~~~~~~~~ag~~ag~~~~~v~~Pldviktrlq~~~~----~~~~~~~~~~~~I~~~eG~ 280 (407)
++|.+||.+|+.+.+.. +..+....+++|++||+++.++++|+|+||+|+|++.. ..|.++++++++|+++||+
T Consensus 83 i~f~~ye~~k~~~~~~~--~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~ 160 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGS--EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGI 160 (303)
T ss_dssp HTTTHHHHHHHHHSCCC--SSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHhcCC--cCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcCh
Confidence 99999999999886432 23567789999999999999999999999999999863 3689999999999999999
Q ss_pred cccccchHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchhhhhhcccccchhhhhhhccchHHHHHHHHHHHHHHHHhhc
Q 015408 281 FSLYKGLVPSIVSMAPSGAVFYGVYDILKSAYLHSPEGKKRLQNMRKDQDLSALEQLELGPVRTLLYGAIAGCCSEAATY 360 (407)
Q Consensus 281 ~glyrG~~~~l~r~~~~~~i~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~iAg~~a~~vt~ 360 (407)
+|||||+.+++++.+|+.+++|.+||.+|+.+.+.... ..+....+++|++||++++++++
T Consensus 161 ~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~-------------------~~~~~~~~~~g~~ag~~~~~~~~ 221 (303)
T 2lck_A 161 RGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLM-------------------TDDLPCHFTSAFGAGFCTTVIAS 221 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSC-------------------CSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-------------------CCchHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999987543210 12456789999999999999999
Q ss_pred HHHHHHHHhhcccCCCcccHHHHHHHHHHhcchhhcccccccccccC
Q 015408 361 PFEVVRRQLQMQVCATKLNALATCVKIVEQGGVPALYAGLTPSLLQV 407 (407)
Q Consensus 361 PlDvIktR~Q~~~~~~~~~~~~~~~~i~r~eGi~glyrGl~p~llrv 407 (407)
|+||||+|||++....+.+.++|+++|+|+||++|||||+.|+++|+
T Consensus 222 P~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~ 268 (303)
T 2lck_A 222 PVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRL 268 (303)
T ss_dssp HHHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCHHHHHHHHHHHcChHHhhccHHHHHHHH
Confidence 99999999999877778899999999999999999999999999873
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=4.5e-44 Score=343.44 Aligned_cols=243 Identities=22% Similarity=0.311 Sum_probs=217.9
Q ss_pred Cccceeeccc----------------cccchhhhhhhhhccCCCCCcccccccccCCCCCCCCchhhHHHHHHHHHhhcC
Q 015408 59 QTLRFVHQRR----------------RGCGFLSVSLSMKGSGEGYVGESTESWGQNGNSKGGEEEEDEEVEEQMVAFKGG 122 (407)
Q Consensus 59 ~~~~~~~~~~----------------~y~g~~~~~~~i~r~~eG~~~~~~gl~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (407)
.|+|.+|+|- +|+++++++.+|.|+ ||+ +|||+|+.++ ..+..+.....|..|
T Consensus 20 ~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-eG~----~glyrG~~~~------l~~~~~~~~i~f~~y 88 (303)
T 2lck_A 20 FPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRT-EGP----RSLYNGLVAG------LQRQMSFASVRIGLY 88 (303)
T ss_dssp HHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHH-HCH----HHHHSSHHHH------HHHHHHHHHHTTTHH
T ss_pred CcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHh-hCH----HHHHcCCHHH------HHHHHHHHHHHHHHH
Confidence 6788888762 589999999999999 999 9999999999 888888888888777
Q ss_pred cchhhccc---CCCChHHHHHHHHHHHHHHHhhhccHHHHHHHHHhcC------CCCCHHHHHHHHHhhcCccccccccH
Q 015408 123 KKVEEKQL---GAYNTTKHLFAGAVAAAVSRTCVAPLERLKLEYIVRG------EQKSLFDLIKTIGATQGLKGFWKGNF 193 (407)
Q Consensus 123 ~~~~~~~~---~~~~~~~~~~aG~~ag~~~~~i~~Pld~vk~r~Q~~~------~~~~~~~~~~~i~~~eG~~glyrG~~ 193 (407)
+..+..-. ...+....+++|++|++++.++++|+|+||+|+|++. .|+++++++++|+++||++|||||+.
T Consensus 89 e~~k~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~ 168 (303)
T 2lck_A 89 DSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTS 168 (303)
T ss_dssp HHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHhcCCcCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCcc
Confidence 76553211 2467789999999999999999999999999999975 47899999999999999999999999
Q ss_pred HHHhhhhhhhhhhhHhHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHHhhhchHHHhhhhhccCCCCCCCcHHHHHHH
Q 015408 194 VNILRTAPFKAINFYAYDTYRNQLLKLSGKDKSTNFERFVAGAAAGITATLLCLPLDTIRTVMVAPGGEALGGLIGAFRH 273 (407)
Q Consensus 194 ~~l~~~~~~~~~~f~~y~~~k~~l~~~~~~~~~~~~~~~~ag~~ag~~~~~v~~Pldviktrlq~~~~~~~~~~~~~~~~ 273 (407)
+++++.+|..+++|.+||.+|+.+.+... ...+....+++|++||++++++++|+|+||+|+|.+....|.++++|+++
T Consensus 169 ~~l~~~~~~~~i~f~~ye~~k~~l~~~~~-~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y~~~~~~~~~ 247 (303)
T 2lck_A 169 PNVARNAIVNCAELVTYDLIKDTLLKANL-MTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALT 247 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTTTS-CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccccccCCHHHHHHH
Confidence 99999999999999999999998865432 34456788999999999999999999999999999887789999999999
Q ss_pred HHHhcCccccccchHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 015408 274 MIQTEGFFSLYKGLVPSIVSMAPSGAVFYGVYDILKSAYL 313 (407)
Q Consensus 274 I~~~eG~~glyrG~~~~l~r~~~~~~i~f~~ye~~k~~~~ 313 (407)
|+++||++|||||+.|+++|.+|..+++|.+||.+|+.+.
T Consensus 248 i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~ 287 (303)
T 2lck_A 248 MLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287 (303)
T ss_dssp HHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998764
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=4.6e-42 Score=328.50 Aligned_cols=250 Identities=20% Similarity=0.270 Sum_probs=210.0
Q ss_pred CccchhccccccCCCccceeecc-------------ccccchhhhhhhhhccCCCCCcccccccccCCCCCCCCchhhHH
Q 015408 45 PSFVSLINTHSLGNQTLRFVHQR-------------RRGCGFLSVSLSMKGSGEGYVGESTESWGQNGNSKGGEEEEDEE 111 (407)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~y~g~~~~~~~i~r~~eG~~~~~~gl~~g~~~~~~~~~~~~~~ 111 (407)
++..+++.... +.|+|.+|+| ++|+|+++++.+|.|+ ||+ +|||||+.++ ..+.
T Consensus 14 G~~ag~~~~~~--~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~-eG~----~glyrG~~~~------l~~~ 80 (297)
T 1okc_A 14 GGVAAAISKTA--VAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKE-QGF----LSFWRGNLAN------VIRY 80 (297)
T ss_dssp HHHHHHHHHHH--THHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHH-HCG----GGGGTTTHHH------HHHH
T ss_pred HHHHHHHHHHh--cCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhc-cch----hheecccHHH------HHHH
Confidence 33444444332 3678888877 2589999999999999 999 9999999999 7888
Q ss_pred HHHHHHHhhcCcchhhc----ccCC----CChHHHHHHHHHHHHHHHhhhccHHHHHHHHHhcC-------CCCCHHHHH
Q 015408 112 VEEQMVAFKGGKKVEEK----QLGA----YNTTKHLFAGAVAAAVSRTCVAPLERLKLEYIVRG-------EQKSLFDLI 176 (407)
Q Consensus 112 ~~~~~~~~~~~~~~~~~----~~~~----~~~~~~~~aG~~ag~~~~~i~~Pld~vk~r~Q~~~-------~~~~~~~~~ 176 (407)
.+.....|..++..+.. .... .....++++|++|++++.++++|+|+||+|+|++. .|+++++++
T Consensus 81 ~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~ 160 (297)
T 1okc_A 81 FPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCI 160 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHH
Confidence 88877777776665541 1111 12467899999999999999999999999999963 478999999
Q ss_pred HHHHhhcCccccccccHHHHhhhhhhhhhhhHhHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHHhhhchHHHhhhhh
Q 015408 177 KTIGATQGLKGFWKGNFVNILRTAPFKAINFYAYDTYRNQLLKLSGKDKSTNFERFVAGAAAGITATLLCLPLDTIRTVM 256 (407)
Q Consensus 177 ~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~y~~~k~~l~~~~~~~~~~~~~~~~ag~~ag~~~~~v~~Pldviktrl 256 (407)
++|+++||++|||||+.+++++.+|..+++|.+||.+|+.+.+. .+.+....+++|++||++++++++|+|+||+|+
T Consensus 161 ~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~---~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~ 237 (297)
T 1okc_A 161 TKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP---KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRM 237 (297)
T ss_dssp HHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG---GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC---CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 99999999999999999999999999999999999999977543 234567889999999999999999999999999
Q ss_pred ccCCC-----CCCCcHHHHHHHHHHhcCccccccchHHHHHHHHHhHHHHHHHHHHHHHH
Q 015408 257 VAPGG-----EALGGLIGAFRHMIQTEGFFSLYKGLVPSIVSMAPSGAVFYGVYDILKSA 311 (407)
Q Consensus 257 q~~~~-----~~~~~~~~~~~~I~~~eG~~glyrG~~~~l~r~~~~~~i~f~~ye~~k~~ 311 (407)
|++.. ..|.++++|+++|+++||++|||||+.|+++|. +..+++|.+||.+|++
T Consensus 238 q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~ 296 (297)
T 1okc_A 238 MMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKF 296 (297)
T ss_dssp HTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC---
T ss_pred hhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhh
Confidence 98753 268999999999999999999999999999996 5789999999998875
No 5
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=12.85 E-value=40 Score=22.83 Aligned_cols=20 Identities=15% Similarity=0.301 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHhhcCccccc
Q 015408 170 KSLFDLIKTIGATQGLKGFW 189 (407)
Q Consensus 170 ~~~~~~~~~i~~~eG~~gly 189 (407)
+++...+.+||+++++.||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 46788899999999999886
No 6
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=12.03 E-value=94 Score=28.03 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=25.1
Q ss_pred HHHHHhhcHHHHHHHHhhcccCCCcccHHHHHHHHHHhcch
Q 015408 353 CCSEAATYPFEVVRRQLQMQVCATKLNALATCVKIVEQGGV 393 (407)
Q Consensus 353 ~~a~~vt~PlDvIktR~Q~~~~~~~~~~~~~~~~i~r~eGi 393 (407)
-++++=.||||.+|-.++..- +....+.+.+.++|+
T Consensus 273 qLaTFdnypfdllRfqL~Sli-----stp~~I~e~i~K~GL 308 (368)
T 3vjj_A 273 QLATFDNYPFDLLRFQLSSLI-----STPALIREKIAKEGL 308 (368)
T ss_dssp HHHHCTTCBHHHHHHHCSSCC-----CCCHHHHHHHHHSCS
T ss_pred eeecCCCCCHHHHHHHhhhhc-----cChHHHHHHHHhcCc
Confidence 345667899999998776543 444666777777774
No 7
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=10.93 E-value=1.7e+02 Score=21.15 Aligned_cols=35 Identities=11% Similarity=0.211 Sum_probs=26.9
Q ss_pred CccccccchHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 015408 279 GFFSLYKGLVPSIVSMAPSGAVFYGVYDILKSAYL 313 (407)
Q Consensus 279 G~~glyrG~~~~l~r~~~~~~i~f~~ye~~k~~~~ 313 (407)
|+...+|-+...++..+|-..+.+.+|++.++...
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne 67 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFE 67 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 34444555677888899999999999999987654
No 8
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=8.57 E-value=1.4e+02 Score=15.86 Aligned_cols=22 Identities=9% Similarity=0.178 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcchhhccccccccccc
Q 015408 381 LATCVKIVEQGGVPALYAGLTPSLLQ 406 (407)
Q Consensus 381 ~~~~~~i~r~eGi~glyrGl~p~llr 406 (407)
|..++.-+| +|||.|=.-|.+|
T Consensus 3 wknfwsslr----kgfydgeagrair 24 (26)
T 2khf_A 3 WKNFWSSLR----KGFYDGEAGRAIR 24 (26)
T ss_dssp HHHHHHHHH----HHHTTTHHHHTTT
T ss_pred HHHHHHHHH----hhcccchhhhHhh
Confidence 344444455 5888876555443
No 9
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=8.32 E-value=5e+02 Score=21.67 Aligned_cols=44 Identities=18% Similarity=0.183 Sum_probs=27.2
Q ss_pred hhhhhhhHhHHHHHHHHhhhcCC----CCCChHHHHHHHHHHHHHHHh
Q 015408 201 PFKAINFYAYDTYRNQLLKLSGK----DKSTNFERFVAGAAAGITATL 244 (407)
Q Consensus 201 ~~~~~~f~~y~~~k~~l~~~~~~----~~~~~~~~~~ag~~ag~~~~~ 244 (407)
....+.|..||..|-......+. .-......+++|..|+++..+
T Consensus 111 ~~gf~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~l 158 (178)
T 1y9i_A 111 SIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRL 158 (178)
T ss_dssp GGGHHHHHHHHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHhhhcccCCCCcchHHHHHHHHHHHHHHHH
Confidence 34556788888888654433322 223456777888888776543
No 10
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=7.73 E-value=3.1e+02 Score=18.16 Aligned_cols=13 Identities=23% Similarity=0.263 Sum_probs=9.7
Q ss_pred cHHHHHHHHHhcC
Q 015408 155 PLERLKLEYIVRG 167 (407)
Q Consensus 155 Pld~vk~r~Q~~~ 167 (407)
-+..||||+|+-+
T Consensus 10 rlaaiktrlqalg 22 (73)
T 2a3d_A 10 RLAAIKTRLQALG 22 (73)
T ss_dssp HHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhc
Confidence 4556899999854
Done!