Your job contains 1 sequence.
>015409
MPLVKIIAKNFMDMVASLTARDLDRLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPA
KMMEEWVLPDGFTKHRVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLRKHLIYGGALPR
EPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSTQAERPTNFSSSMMKVFQRGLLSRR
DKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAY
NLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSARKEGFIVVE
TNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQ
NAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRVI
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 015409
(407 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-030131-6779 - symbol:gtf2h4 "general transc... 676 1.7e-66 1
UNIPROTKB|Q767M2 - symbol:TFIIH "Uncharacterized protein"... 644 4.2e-63 1
UNIPROTKB|A6H7G8 - symbol:GTF2H4 "Uncharacterized protein... 643 5.4e-63 1
UNIPROTKB|F1PGI3 - symbol:GTF2H4 "Uncharacterized protein... 641 8.8e-63 1
UNIPROTKB|Q92759 - symbol:GTF2H4 "General transcription f... 641 8.8e-63 1
UNIPROTKB|P60027 - symbol:GTF2H4 "General transcription f... 641 8.8e-63 1
RGD|1303309 - symbol:Gtf2h4 "general transcription factor... 640 1.1e-62 1
MGI|MGI:1338799 - symbol:Gtf2h4 "general transcription fa... 639 1.4e-62 1
DICTYBASE|DDB_G0293228 - symbol:gtf2h4 "TFIIH subunit" sp... 469 1.6e-59 2
FB|FBgn0261109 - symbol:mrn "marionette" species:7227 "Dr... 569 3.7e-55 1
POMBASE|SPBC13G1.13 - symbol:tfb2 "transcription factor T... 559 4.3e-54 1
CGD|CAL0002355 - symbol:orf19.5846 species:5476 "Candida ... 500 7.8e-54 2
SGD|S000006043 - symbol:TFB2 "Subunit of TFIIH and nucleo... 329 4.3e-53 3
UNIPROTKB|G4NCE6 - symbol:MGG_00397 "RNA polymerase II tr... 385 3.7e-48 2
WB|WBGene00013529 - symbol:Y73F8A.24 species:6239 "Caenor... 440 1.7e-41 1
ASPGD|ASPL0000068300 - symbol:AN7015 species:162425 "Emer... 405 8.9e-38 1
UNIPROTKB|B4DTJ5 - symbol:GTF2H4 "cDNA FLJ50212, highly s... 241 5.1e-20 1
UNIPROTKB|A2ABL5 - symbol:GTF2H4 "General transcription f... 132 5.2e-08 1
>ZFIN|ZDB-GENE-030131-6779 [details] [associations]
symbol:gtf2h4 "general transcription factor IIH,
polypeptide 4" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0000439 "core TFIIH complex" evidence=IEA]
InterPro:IPR004598 Pfam:PF03849 ZFIN:ZDB-GENE-030131-6779
GO:GO:0005634 GO:GO:0006355 GO:GO:0006281 KO:K03144
PANTHER:PTHR13152 CTD:2968 HOVERGEN:HBG054205 TIGRFAMs:TIGR00625
EMBL:BC064301 IPI:IPI00511064 RefSeq:NP_956221.1 UniGene:Dr.75464
STRING:Q6P2T8 GeneID:334839 KEGG:dre:334839 InParanoid:Q6P2T8
NextBio:20810565 ArrayExpress:Q6P2T8 Uniprot:Q6P2T8
Length = 466
Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
Identities = 153/420 (36%), Positives = 234/420 (55%)
Query: 4 VKIIAKNFMDMVASLTARDLDRLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMM 63
V++ KN + + LT LDRLY +P C A+ R LPPLAK YVM+M ++D +P +
Sbjct: 5 VQLQCKNLHEYLKELTPEILDRLYNHPATCLAVYRELPPLAKNYVMRMLFLDHPLPQAAV 64
Query: 64 EEWVLPDGFTKHRVAIDRLVQLRLFSEEKKKETT--YRLNSTFQSNLRKHLIYGGALP-- 119
WV H + L LRL+ + + + LN F+ NLR L+ GG P
Sbjct: 65 ALWVKKGSQKDHDQCVSVLTGLRLWHSQHLQGGLQGFVLNPVFKDNLRIALL-GGGKPWA 123
Query: 120 REPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSTQAERPTNFSSSMMKVFQRGLLSR 179
E G +E L+ YA+ +WE L ++ S A + + ++ Q GL+
Sbjct: 124 DEGANLGPDRHARDVESLDRYAMERWEVILHFMVGSPSAAVSQDLAQLLI---QAGLMKS 180
Query: 180 RDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEA 239
EAP +T +GFQFLL+DT +QLWY +Y+ +Q RG++ +++SFL +LSF G
Sbjct: 181 ETGEAPCITSAGFQFLLLDTASQLWYFTLQYLKTAQSRGMDLVEILSFLFQLSFSTLGRD 240
Query: 240 YNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSARKE----- 294
Y++ +SE + ++ + GLV Q+ RK + PT+LA L+ +T + A
Sbjct: 241 YSVEGMSESLLTFLQHLREFGLV-FQRKRKSRRYYPTRLAITLAAGVTANPASGSASSAL 299
Query: 295 ---------GFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAF 345
GFIVVETN+R+YAY+ S+L ++ LFS++ Y+ PNL+V +T+ES+ A
Sbjct: 300 GAIPGTGDTGFIVVETNYRIYAYTNSELQIALVALFSEMLYRFPNLVVAQVTRESVQQAI 359
Query: 346 ENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSR 405
NGITA+QII FL+ AHP + + P +P + DQIRLWE + +R++ T Y++F S+
Sbjct: 360 SNGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELEKDRLQFTEGVLYNQFLSQ 419
>UNIPROTKB|Q767M2 [details] [associations]
symbol:TFIIH "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008353 "RNA polymerase II carboxy-terminal domain
kinase activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005675 "holo TFIIH
complex" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0000439 "core TFIIH complex" evidence=IEA]
InterPro:IPR004598 Pfam:PF03849 GO:GO:0006355 GO:GO:0006281
GO:GO:0006366 GO:GO:0008353 GO:GO:0005675 GO:GO:0008094
EMBL:AB113354 EMBL:AB113355 eggNOG:COG5144 KO:K03144
PANTHER:PTHR13152 CTD:2968 HOGENOM:HOG000170529 HOVERGEN:HBG054205
OMA:CVLHYMV OrthoDB:EOG4F1X34 TIGRFAMs:TIGR00625
GeneTree:ENSGT00390000014159 EMBL:CT971577 RefSeq:NP_001116592.1
UniGene:Ssc.7512 STRING:Q767M2 Ensembl:ENSSSCT00000001505
GeneID:100144458 KEGG:ssc:100144458 Uniprot:Q767M2
Length = 463
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 146/410 (35%), Positives = 236/410 (57%)
Query: 4 VKIIAKNFMDMVASLTARDLDRLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMM 63
V + +N + + L+ LDRLY +P C A+ R LP LAK +VM+M +++ +P +
Sbjct: 13 VHLQCRNLQEFLGGLSPVVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAV 72
Query: 64 EEWVLPDGFTKHRVAIDRLVQ-LRLFSEEKKKETTYRL--NSTFQSNLRKHLIYGG-ALP 119
WV + F+K + L+ LR++ + L N F+ NLR L+ GG A
Sbjct: 73 ALWVKKE-FSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWS 131
Query: 120 REPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSTQAERPTNFSSSMMKVFQRGLL-S 178
+ G + L+ YA +WE L ++ S A + + + Q GL+ S
Sbjct: 132 DDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS---QAGLMKS 188
Query: 179 RRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGE 238
E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+
Sbjct: 189 AEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGK 248
Query: 239 AYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS--SARKEGF 296
Y++ +S+ + ++ +LGLV Q+ RK + PT+LA NLS ++ + + + GF
Sbjct: 249 DYSVEGMSDSLLNFLQHLRELGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGF 307
Query: 297 IVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIIS 356
IVVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII
Sbjct: 308 IVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIH 367
Query: 357 FLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRV 406
FL+ AHP + + P +P + DQIRLWE + +R+ T Y++F S+V
Sbjct: 368 FLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQV 417
>UNIPROTKB|A6H7G8 [details] [associations]
symbol:GTF2H4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008353 "RNA polymerase II carboxy-terminal domain
kinase activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005675 "holo TFIIH
complex" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0000439 "core TFIIH complex" evidence=IEA]
InterPro:IPR004598 Pfam:PF03849 GO:GO:0006355 GO:GO:0006281
GO:GO:0006366 GO:GO:0008353 GO:GO:0005675 GO:GO:0008094
eggNOG:COG5144 KO:K03144 PANTHER:PTHR13152 CTD:2968
HOGENOM:HOG000170529 HOVERGEN:HBG054205 OMA:CVLHYMV
TIGRFAMs:TIGR00625 GeneTree:ENSGT00390000014159 EMBL:DAAA02055395
EMBL:BC146240 IPI:IPI00707368 RefSeq:NP_001094527.1
UniGene:Bt.98689 Ensembl:ENSBTAT00000054213 GeneID:100137723
KEGG:bta:100137723 NextBio:20789427 Uniprot:A6H7G8
Length = 463
Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
Identities = 146/410 (35%), Positives = 236/410 (57%)
Query: 4 VKIIAKNFMDMVASLTARDLDRLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMM 63
V + +N + + L+ LDRLY +P C A+ R LP LAK +VM+M +++ +P +
Sbjct: 13 VHLQCRNLQEFLGGLSPGILDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAV 72
Query: 64 EEWVLPDGFTKHRVAIDRLVQ-LRLFSEEKKKETTYRL--NSTFQSNLRKHLIYGG-ALP 119
WV + F+K + L+ LR++ + L N F+ NLR L+ GG A
Sbjct: 73 ALWVKKE-FSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWS 131
Query: 120 REPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSTQAERPTNFSSSMMKVFQRGLL-S 178
+ G + L+ YA +WE L ++ S A + + + Q GL+ S
Sbjct: 132 DDTSQLGPDKHARDVLSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS---QAGLMKS 188
Query: 179 RRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGE 238
E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+
Sbjct: 189 AEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGK 248
Query: 239 AYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS--SARKEGF 296
Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ + +A + GF
Sbjct: 249 DYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAHQPGF 307
Query: 297 IVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIIS 356
IVVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII
Sbjct: 308 IVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIH 367
Query: 357 FLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRV 406
FL+ AHP + + P +P + DQIRLWE + +R+ T Y++F S+V
Sbjct: 368 FLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQV 417
>UNIPROTKB|F1PGI3 [details] [associations]
symbol:GTF2H4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0000439 "core TFIIH complex" evidence=IEA]
InterPro:IPR004598 Pfam:PF03849 GO:GO:0005634 GO:GO:0006355
GO:GO:0006281 KO:K03144 PANTHER:PTHR13152 OMA:CVLHYMV
TIGRFAMs:TIGR00625 GeneTree:ENSGT00390000014159 EMBL:AAEX03008206
RefSeq:XP_003639474.1 Ensembl:ENSCAFT00000000727 GeneID:100856712
KEGG:cfa:100856712 Uniprot:F1PGI3
Length = 463
Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
Identities = 145/410 (35%), Positives = 236/410 (57%)
Query: 4 VKIIAKNFMDMVASLTARDLDRLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMM 63
V + +N + + L+ LDRLY +P C A+ R LP LAK +VM+M +++ +P +
Sbjct: 13 VHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPFLAKNWVMRMLFLEQPLPQAAV 72
Query: 64 EEWVLPDGFTKHRVAIDRLVQ-LRLFSEEKKKETTYRL--NSTFQSNLRKHLIYGG-ALP 119
WV + F+K + L+ LR++ + L N F+ NLR L+ GG A
Sbjct: 73 ALWVKKE-FSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWS 131
Query: 120 REPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSTQAERPTNFSSSMMKVFQRGLL-S 178
+ G + L+ YA +WE L ++ S A + + + Q GL+ S
Sbjct: 132 DDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS---QAGLMKS 188
Query: 179 RRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGE 238
E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+
Sbjct: 189 TEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGK 248
Query: 239 AYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS--SARKEGF 296
Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ + +A + GF
Sbjct: 249 DYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAHQPGF 307
Query: 297 IVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIIS 356
I+VETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII
Sbjct: 308 IIVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIH 367
Query: 357 FLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRV 406
FL+ AHP + + P +P + DQIRLWE + +R+ T Y++F S+V
Sbjct: 368 FLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQV 417
>UNIPROTKB|Q92759 [details] [associations]
symbol:GTF2H4 "General transcription factor IIH subunit 4"
species:9606 "Homo sapiens" [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IDA;TAS] [GO:0004672 "protein kinase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005675 "holo TFIIH complex" evidence=IDA] [GO:0008353 "RNA
polymerase II carboxy-terminal domain kinase activity"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=TAS] [GO:0000718
"nucleotide-excision repair, DNA damage removal" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] [GO:0006360
"transcription from RNA polymerase I promoter" evidence=TAS]
[GO:0006361 "transcription initiation from RNA polymerase I
promoter" evidence=TAS] [GO:0006362 "transcription elongation from
RNA polymerase I promoter" evidence=TAS] [GO:0006363 "termination
of RNA polymerase I transcription" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0050434 "positive regulation of viral
transcription" evidence=TAS] [GO:0006468 "protein phosphorylation"
evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR004598 Pfam:PF03849 Reactome:REACT_116125 GO:GO:0016032
EMBL:BA000025 EMBL:CH471081 Reactome:REACT_1675 GO:GO:0006468
GO:GO:0003700 GO:GO:0006368 GO:GO:0006367 Reactome:REACT_1788
GO:GO:0005675 GO:GO:0006370 GO:GO:0000718 GO:GO:0050434
GO:GO:0006363 GO:GO:0006362 GO:GO:0006361 GO:GO:0006283
EMBL:CR759747 EMBL:AL773541 EMBL:BX927194 EMBL:CR936875
eggNOG:COG5144 KO:K03144 PANTHER:PTHR13152 EMBL:Y07595
EMBL:BT007321 EMBL:AY124590 EMBL:AB088103 EMBL:AB202101
EMBL:AB103609 EMBL:BC004935 EMBL:BC016302 IPI:IPI00016839
RefSeq:NP_001508.1 UniGene:Hs.485070 ProteinModelPortal:Q92759
SMR:Q92759 DIP:DIP-48376N STRING:Q92759 PhosphoSite:Q92759
DMDM:17380328 PaxDb:Q92759 PRIDE:Q92759 DNASU:2968
Ensembl:ENST00000259895 Ensembl:ENST00000376316
Ensembl:ENST00000376326 Ensembl:ENST00000400450
Ensembl:ENST00000413314 Ensembl:ENST00000416773
Ensembl:ENST00000423881 Ensembl:ENST00000434226
Ensembl:ENST00000435498 Ensembl:ENST00000438348
Ensembl:ENST00000440824 Ensembl:ENST00000456968 GeneID:2968
KEGG:hsa:2968 UCSC:uc003nsa.1 CTD:2968 GeneCards:GC06P030875
HGNC:HGNC:4658 MIM:601760 neXtProt:NX_Q92759 PharmGKB:PA29044
HOGENOM:HOG000170529 HOVERGEN:HBG054205 InParanoid:Q92759
OMA:CVLHYMV OrthoDB:EOG4F1X34 PhylomeDB:Q92759 GenomeRNAi:2968
NextBio:11764 ArrayExpress:Q92759 Bgee:Q92759 CleanEx:HS_GTF2H4
Genevestigator:Q92759 GermOnline:ENSG00000137411 TIGRFAMs:TIGR00625
Uniprot:Q92759
Length = 462
Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
Identities = 145/410 (35%), Positives = 235/410 (57%)
Query: 4 VKIIAKNFMDMVASLTARDLDRLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMM 63
V + +N + + L+ LDRLY +P C A+ R LP LAK +VM+M +++ +P +
Sbjct: 12 VHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAV 71
Query: 64 EEWVLPDGFTKHRVAIDRLVQ-LRLFSEEKKKETTYRL--NSTFQSNLRKHLIYGG-ALP 119
WV + F+K + L+ LR++ + L N F+ NLR L+ GG A
Sbjct: 72 ALWVKKE-FSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWS 130
Query: 120 REPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSTQAERPTNFSSSMMKVFQRGLL-S 178
+ G + L+ YA +WE L ++ S A + + + Q GL+ S
Sbjct: 131 DDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS---QAGLMKS 187
Query: 179 RRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGE 238
E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+
Sbjct: 188 TEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGK 247
Query: 239 AYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS--SARKEGF 296
Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ + + + GF
Sbjct: 248 DYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGF 306
Query: 297 IVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIIS 356
IVVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII
Sbjct: 307 IVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIH 366
Query: 357 FLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRV 406
FL+ AHP + + P +P + DQIRLWE + +R+ T Y++F S+V
Sbjct: 367 FLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQV 416
>UNIPROTKB|P60027 [details] [associations]
symbol:GTF2H4 "General transcription factor IIH subunit 4"
species:9598 "Pan troglodytes" [GO:0005675 "holo TFIIH complex"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0004672 "protein kinase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0008353 "RNA polymerase II carboxy-terminal
domain kinase activity" evidence=ISS] InterPro:IPR004598
Pfam:PF03849 GO:GO:0006355 GO:GO:0006281 EMBL:BA000041
GO:GO:0006366 GO:GO:0008353 GO:GO:0005675 GO:GO:0008094
eggNOG:COG5144 KO:K03144 PANTHER:PTHR13152 CTD:2968
HOGENOM:HOG000170529 HOVERGEN:HBG054205 OMA:CVLHYMV
OrthoDB:EOG4F1X34 TIGRFAMs:TIGR00625 EMBL:AB210199 EMBL:AB210200
RefSeq:NP_001038968.1 UniGene:Ptr.6202 ProteinModelPortal:P60027
SMR:P60027 STRING:P60027 PRIDE:P60027 Ensembl:ENSPTRT00000033136
GeneID:462549 KEGG:ptr:462549 GeneTree:ENSGT00390000014159
InParanoid:P60027 NextBio:20841799 Uniprot:P60027
Length = 462
Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
Identities = 145/410 (35%), Positives = 235/410 (57%)
Query: 4 VKIIAKNFMDMVASLTARDLDRLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMM 63
V + +N + + L+ LDRLY +P C A+ R LP LAK +VM+M +++ +P +
Sbjct: 12 VHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAV 71
Query: 64 EEWVLPDGFTKHRVAIDRLVQ-LRLFSEEKKKETTYRL--NSTFQSNLRKHLIYGG-ALP 119
WV + F+K + L+ LR++ + L N F+ NLR L+ GG A
Sbjct: 72 ALWVKKE-FSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWS 130
Query: 120 REPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSTQAERPTNFSSSMMKVFQRGLL-S 178
+ G + L+ YA +WE L ++ S A + + + Q GL+ S
Sbjct: 131 DDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS---QAGLMKS 187
Query: 179 RRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGE 238
E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+
Sbjct: 188 TEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGK 247
Query: 239 AYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS--SARKEGF 296
Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ + + + GF
Sbjct: 248 DYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGF 306
Query: 297 IVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIIS 356
IVVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII
Sbjct: 307 IVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIH 366
Query: 357 FLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRV 406
FL+ AHP + + P +P + DQIRLWE + +R+ T Y++F S+V
Sbjct: 367 FLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQV 416
>RGD|1303309 [details] [associations]
symbol:Gtf2h4 "general transcription factor II H, polypeptide 4"
species:10116 "Rattus norvegicus" [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0005675 "holo TFIIH complex" evidence=IEA;ISO]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0006468 "protein phosphorylation" evidence=ISO] [GO:0008353
"RNA polymerase II carboxy-terminal domain kinase activity"
evidence=IEA;ISO] [GO:0004672 "protein kinase activity"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO] InterPro:IPR004598 Pfam:PF03849 RGD:1303309
GO:GO:0006355 GO:GO:0006281 GO:GO:0006366 GO:GO:0008353
GO:GO:0005675 GO:GO:0008094 EMBL:BX883047 eggNOG:COG5144 KO:K03144
PANTHER:PTHR13152 CTD:2968 HOGENOM:HOG000170529 HOVERGEN:HBG054205
OMA:CVLHYMV OrthoDB:EOG4F1X34 TIGRFAMs:TIGR00625
GeneTree:ENSGT00390000014159 EMBL:BC127469 IPI:IPI00215269
RefSeq:NP_997666.1 UniGene:Rn.34122 STRING:Q6MG20
Ensembl:ENSRNOT00000001103 GeneID:294236 KEGG:rno:294236
UCSC:RGD:1303309 InParanoid:Q6MG20 NextBio:637807
Genevestigator:Q6MG20 Uniprot:Q6MG20
Length = 463
Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
Identities = 144/405 (35%), Positives = 233/405 (57%)
Query: 9 KNFMDMVASLTARDLDRLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVL 68
+N + + L+ LDRLY +P C A+ R LP LAK +VM+M +++ +P + WV
Sbjct: 18 RNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAVALWVK 77
Query: 69 PDGFTKHRVAIDRLVQ-LRLFSEEKKKETTYRL--NSTFQSNLRKHLIYGG-ALPREPMP 124
+ F+K + L+ LR++ + L N F+ NLR L+ GG A +
Sbjct: 78 KE-FSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPVFRQNLRIALLGGGKAWSDDTSQ 136
Query: 125 SGITARLPTLEDLEAYAIGQWECFLLQLISSTQAERPTNFSSSMMKVFQRGLL-SRRDKE 183
G + L+ YA +WE L ++ S A + + + Q GL+ S E
Sbjct: 137 LGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS---QAGLMKSTEPGE 193
Query: 184 APRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLN 243
P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y++
Sbjct: 194 PPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYSVE 253
Query: 244 TLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS--SARKEGFIVVET 301
+S+ + ++ + GLV Q+ RK + PT+LA NLS ++ + + + GFIVVET
Sbjct: 254 GMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVET 312
Query: 302 NFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQN 361
N+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+
Sbjct: 313 NYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTR 372
Query: 362 AHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRV 406
AHP + + P +P + DQIRLWE + +R+ T Y++F S+V
Sbjct: 373 AHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQV 417
>MGI|MGI:1338799 [details] [associations]
symbol:Gtf2h4 "general transcription factor II H,
polypeptide 4" species:10090 "Mus musculus" [GO:0000439 "core TFIIH
complex" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005675 "holo TFIIH complex" evidence=ISO] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0006468 "protein
phosphorylation" evidence=ISO] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] InterPro:IPR004598 Pfam:PF03849
MGI:MGI:1338799 GO:GO:0006355 GO:GO:0006281 GO:GO:0006366
GO:GO:0008353 GO:GO:0005675 GO:GO:0008094 eggNOG:COG5144 KO:K03144
PANTHER:PTHR13152 CTD:2968 HOGENOM:HOG000170529 HOVERGEN:HBG054205
OMA:CVLHYMV OrthoDB:EOG4F1X34 TIGRFAMs:TIGR00625 EMBL:AF054823
EMBL:BC012638 IPI:IPI00118172 RefSeq:NP_034494.1 UniGene:Mm.10182
ProteinModelPortal:O70422 SMR:O70422 IntAct:O70422 STRING:O70422
PhosphoSite:O70422 PaxDb:O70422 PRIDE:O70422
Ensembl:ENSMUST00000001565 Ensembl:ENSMUST00000160734 GeneID:14885
KEGG:mmu:14885 InParanoid:O70422 NextBio:287167 Bgee:O70422
CleanEx:MM_GTF2H4 Genevestigator:O70422
GermOnline:ENSMUSG00000001524 Uniprot:O70422
Length = 463
Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
Identities = 144/405 (35%), Positives = 233/405 (57%)
Query: 9 KNFMDMVASLTARDLDRLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVL 68
+N + + L+ LDRLY +P C A+ R LP LAK +VM+M +++ +P + WV
Sbjct: 18 RNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAVALWVK 77
Query: 69 PDGFTKHRVAIDRLVQ-LRLFSEEKKKETTYRL--NSTFQSNLRKHLIYGG-ALPREPMP 124
+ F+K + L+ LR++ + L N F+ NLR L+ GG A +
Sbjct: 78 KE-FSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPVFRQNLRIALLGGGKAWSDDTSQ 136
Query: 125 SGITARLPTLEDLEAYAIGQWECFLLQLISSTQAERPTNFSSSMMKVFQRGLL-SRRDKE 183
G + L+ YA +WE L ++ S A + + + Q GL+ S E
Sbjct: 137 LGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS---QAGLMKSTEPGE 193
Query: 184 APRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLN 243
P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y++
Sbjct: 194 PPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYSVE 253
Query: 244 TLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDS--SARKEGFIVVET 301
+S+ + ++ + GLV Q+ RK + PT+LA NLS ++ + + + GFIVVET
Sbjct: 254 GMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVET 312
Query: 302 NFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQN 361
N+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+
Sbjct: 313 NYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTR 372
Query: 362 AHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRV 406
AHP + + P +P + DQIRLWE + +R+ T Y++F S+V
Sbjct: 373 AHPVMLKQNPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQV 417
>DICTYBASE|DDB_G0293228 [details] [associations]
symbol:gtf2h4 "TFIIH subunit" species:44689
"Dictyostelium discoideum" [GO:0006289 "nucleotide-excision repair"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0000439
"core TFIIH complex" evidence=IEA] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=ISS] [GO:0005675 "holo TFIIH
complex" evidence=ISS] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR004598
Pfam:PF03849 dictyBase:DDB_G0293228 GenomeReviews:CM000155_GR
GO:GO:0006355 EMBL:AAFI02000200 GO:GO:0006366 GO:GO:0006289
GO:GO:0005675 RefSeq:XP_629237.1 ProteinModelPortal:Q54C29
STRING:Q54C29 PRIDE:Q54C29 EnsemblProtists:DDB0231037
GeneID:8629119 KEGG:ddi:DDB_G0293228 eggNOG:COG5144 KO:K03144
OMA:PVNCLPI ProtClustDB:CLSZ2728699 PANTHER:PTHR13152
Uniprot:Q54C29
Length = 483
Score = 469 (170.2 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
Identities = 112/331 (33%), Positives = 190/331 (57%)
Query: 90 EEKKKETTYRLNSTFQSNLRKHLIYGGALPREPMPS-GITARLPTLEDLEAYAIGQWECF 148
++++ E T RLN FQ N+++ L+ + S + P+++DL++Y+ QWE
Sbjct: 113 QQQQTEQTIRLNPLFQDNIKRSLVQVNQVIFSNNSSIKDNHKPPSIDDLDSYSKSQWEKV 172
Query: 149 LLQLISSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVR 208
L L T +P+ S ++ L++++ + +T GF+FLL D Q+W ++
Sbjct: 173 LYFLSDDTV--QPSKLISELLLSSN---LTKQEGDGLSITSEGFKFLLKDVYTQIWTLLI 227
Query: 209 EYISNSQER---GI-NQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKL 264
Y+ + +++ G ++ DL+SFL LSF G Y ++ LSE QK + GL+ +
Sbjct: 228 VYLDDLEKKKGKGSGSRNDLLSFLFRLSFLNLGRGYLVSELSEQQKEYLFALKQFGLIYM 287
Query: 265 QQGRKENWFIPTKLATNLS----MSLTDS-------SARKEGFIVVETNFRMYAYSTSKL 313
+ F PT+L +L+ +SL S + +++G+IV+ETN+R+YAY++S L
Sbjct: 288 RTD-SSILFYPTRLIISLTTGKTLSLIQSISSERTQTQKEQGYIVLETNYRLYAYTSSSL 346
Query: 314 HCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSV 373
+L LF K+ Y+LPNL VG IT+ES+ A +GITA+QII F++ N+HP A+ +
Sbjct: 347 QISLLSLFVKMLYRLPNLAVGIITRESIRTALIHGITADQIIDFVRHNSHPNAANSGQPI 406
Query: 374 PENVCDQIRLWESDLNRVEMTPAHYYDEFPS 404
P+ V +QI LWE++ NR+ T + Y+ FP+
Sbjct: 407 PDVVAEQILLWEAERNRITYTKSVLYNSFPT 437
Score = 159 (61.0 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
Identities = 29/86 (33%), Positives = 56/86 (65%)
Query: 7 IAKNFMDMVASLTARDLDRLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEW 66
++K F +ASL ++DL+ LY++P+ C+AILRSLPP +K+Y+++M +D P + ++W
Sbjct: 3 LSKVFQ-YLASLDSKDLEELYKDPWTCQAILRSLPPRSKQYILKMLLVD-TYPLSLAKDW 60
Query: 67 VLPDGFTKHRVAIDRLVQLRLFSEEK 92
+H+ ++ +L L++ +K
Sbjct: 61 STQASIQQHKESLKKLFDLKIIFLDK 86
>FB|FBgn0261109 [details] [associations]
symbol:mrn "marionette" species:7227 "Drosophila
melanogaster" [GO:0005675 "holo TFIIH complex" evidence=ISS;IDA]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=ISS] [GO:0000439 "core TFIIH complex"
evidence=ISS;IPI] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0001671 "ATPase activator activity" evidence=IDA]
[GO:0001111 "promoter clearance from RNA polymerase II promoter"
evidence=ISS] [GO:0006289 "nucleotide-excision repair"
evidence=IDA;IMP] [GO:0010224 "response to UV-B" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0001113 "transcriptional
open complex formation at RNA polymerase II promoter" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IDA] InterPro:IPR004598 Pfam:PF03849 EMBL:AE014296
GO:GO:0006355 GO:GO:0001671 GO:GO:0006367 GO:GO:0010224
GO:GO:0006289 GO:GO:0005675 GO:GO:0000439 KO:K03144
PANTHER:PTHR13152 OMA:CVLHYMV TIGRFAMs:TIGR00625
GeneTree:ENSGT00390000014159 FlyBase:FBgn0261109 RefSeq:NP_648780.1
ProteinModelPortal:Q9VUR1 SMR:Q9VUR1 IntAct:Q9VUR1 MINT:MINT-849737
STRING:Q9VUR1 PRIDE:Q9VUR1 EnsemblMetazoa:FBtr0075595 GeneID:39688
KEGG:dme:Dmel_CG7764 UCSC:CG7764-RA CTD:39688 InParanoid:Q9VUR1
PhylomeDB:Q9VUR1 GenomeRNAi:39688 NextBio:814886
ArrayExpress:Q9VUR1 Bgee:Q9VUR1 Uniprot:Q9VUR1
Length = 499
Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
Identities = 135/422 (31%), Positives = 234/422 (55%)
Query: 9 KNFMDMVASL-TARDLDRLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWV 67
K+F + + + T L++LY P IC A+ R LP +A+++++++ ++D +P ++ W
Sbjct: 35 KDFQEYLRTRQTPESLEKLYNYPPICLAVFRELPEIARQFIIRILFVDQPVPQAVVTSWG 94
Query: 68 LPDGFTKHRVAIDRLVQLRLFSEEKKKE--TTYRLNSTFQSNLRKHLIYGGALPREPMPS 125
+ A L L ++ + + L+ TF+ ++R+ L+ GG P PM +
Sbjct: 95 AQRCAKEQAEATSCLTALNVWRVTAIPGGLSAWELSPTFKKSVRQVLL-GGGKPW-PMTN 152
Query: 126 GIT--ARLPTLEDLEAYAIGQWECFLLQLISS-----TQAERPTNFSSSMMKVFQRGLLS 178
+ ++ + L+ YA+ +W C L ++ + T AE S +++ L
Sbjct: 153 TLDKDSKPRDIAFLDTYAMSRWRCVLHYMVGTGNRNGTDAEA---ISPDAVRILLHANLM 209
Query: 179 RRD-KEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAG 237
+RD ++ +T GFQFLL+DT AQ+W+ + +Y+ +ERGI+ + +S L +LSF G
Sbjct: 210 KRDERDGITITRQGFQFLLLDTRAQVWHFMLQYLDTCEERGISLPECLSMLFQLSFSTLG 269
Query: 238 EAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNL---------SMSLTD 288
Y+ ++ + ++ + GLV Q+ RKE F PT+LA N+ S+++ +
Sbjct: 270 RDYSSEGMNSQMLTFLQHLREFGLV-FQRKRKEGRFYPTRLALNVTSKEAAATASVAMDE 328
Query: 289 SSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENG 348
+ + G+IVVETN+R+YAY+ S L +L LF+++ Y+ PNL+VG +T++S+ A G
Sbjct: 329 EATQDCGYIVVETNYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGG 388
Query: 349 ITAEQIISFLQQNAHPR---VADRMPS---VPENVCDQIRLWESDLNRVEMTPAHYYDEF 402
ITAEQI+S+L+Q AHP V + S +P V DQI+LWE + NR T Y++F
Sbjct: 389 ITAEQIVSYLEQYAHPNMRMVESAIHSKSCLPPTVVDQIKLWELERNRFTYTEGVLYNQF 448
Query: 403 PS 404
S
Sbjct: 449 LS 450
>POMBASE|SPBC13G1.13 [details] [associations]
symbol:tfb2 "transcription factor TFIIH complex subunit
Tfb2" species:4896 "Schizosaccharomyces pombe" [GO:0000112
"nucleotide-excision repair factor 3 complex" evidence=ISO]
[GO:0000439 "core TFIIH complex" evidence=ISO] [GO:0000717
"nucleotide-excision repair, DNA duplex unwinding" evidence=ISO]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=ISO] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0005675 "holo TFIIH complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=ISO] InterPro:IPR004598 Pfam:PF03849
PomBase:SPBC13G1.13 GO:GO:0005737 GO:GO:0006355 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0006367 GO:GO:0000991 GO:GO:0005675
GO:GO:0000717 GO:GO:0000439 GO:GO:0000112 eggNOG:COG5144 KO:K03144
OMA:PVNCLPI PANTHER:PTHR13152 HOGENOM:HOG000170529
TIGRFAMs:TIGR00625 PIR:T39414 RefSeq:NP_596563.1
ProteinModelPortal:P87303 IntAct:P87303 STRING:P87303
EnsemblFungi:SPBC13G1.13.1 GeneID:2539790 KEGG:spo:SPBC13G1.13
OrthoDB:EOG4CZFQD NextBio:20800939 Uniprot:P87303
Length = 447
Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
Identities = 130/385 (33%), Positives = 213/385 (55%)
Query: 25 RLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQ 84
RLY+ P C A+ R LP LA++YVM M + + + W+ + ++LV+
Sbjct: 21 RLYQKPAACLAVFRLLPILARQYVMSMLFNPMPVALSDFDLWIKLSSKVYQSESFNKLVR 80
Query: 85 LRLFSEEKKKETTYRLNSTFQSNLRKHLIYGGALPREPMP-SGITARLPTLEDLEAYAIG 143
+ +F + + T LNS F+ L GG +P + L T++ L+AYA
Sbjct: 81 MHIFQFDGQYIT---LNSEFRKQFITALTGGGNHNSFGVPCTDEDKHLVTVDFLDAYAKE 137
Query: 144 QWECFLLQLISSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQL 203
WE L ++ + +A+ P ++ + +RG L K R+T +GFQFLL D NAQ+
Sbjct: 138 TWETILHFMVGTPEAKFP---GEGVLSLLKRGGLMSGPKNQLRITRAGFQFLLQDINAQI 194
Query: 204 WYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVK 263
W ++ +Y+ S++ ++ ++ FL L G AY+++ L++ Q+ M++D + GLV
Sbjct: 195 WTLLLDYLKLSEDTHMDPVQVLHFLFMLGSLDLGRAYSVDFLTDTQQIMLEDLREYGLV- 253
Query: 264 LQQGRKENWFIPTKLATNLSM---SLTDSSARKE---GFIVVETNFRMYAYSTSKLHCEI 317
Q+ F PT+LAT L+ SL + + GFI+VETN+R+YAY++S L I
Sbjct: 254 YQRKITSKRFYPTRLATGLTTDYRSLHGKQSENDDDKGFIIVETNYRLYAYTSSPLQIAI 313
Query: 318 LRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENV 377
+ LF+ + + NL+VG IT++S+ A NGI AEQII++L +AHP++ +P +P +
Sbjct: 314 IGLFANLRARFSNLVVGVITRDSIRRALMNGIAAEQIITYLTTHAHPQMRSNVPLLPPTL 373
Query: 378 CDQIRLWESDLNRVEMTPAHYYDEF 402
DQI LWE + NR+ TP + +F
Sbjct: 374 VDQIYLWELEKNRLRATPGILFRDF 398
>CGD|CAL0002355 [details] [associations]
symbol:orf19.5846 species:5476 "Candida albicans" [GO:0005675
"holo TFIIH complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0000439 "core TFIIH complex" evidence=IEA]
[GO:0000112 "nucleotide-excision repair factor 3 complex"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0070816 "phosphorylation of RNA polymerase II
C-terminal domain" evidence=IEA] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR004598
Pfam:PF03849 CGD:CAL0002355 GO:GO:0005634 GO:GO:0006355
GO:GO:0006281 EMBL:AACQ01000235 EMBL:AACQ01000236 eggNOG:COG5144
KO:K03144 PANTHER:PTHR13152 HOGENOM:HOG000170529 TIGRFAMs:TIGR00625
RefSeq:XP_710801.1 RefSeq:XP_710812.1 STRING:Q59M53 GeneID:3647581
GeneID:3647592 KEGG:cal:CaO19.13268 KEGG:cal:CaO19.5846
Uniprot:Q59M53
Length = 494
Score = 500 (181.1 bits), Expect = 7.8e-54, Sum P(2) = 7.8e-54
Identities = 124/357 (34%), Positives = 197/357 (55%)
Query: 25 RLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQ 84
+LYE P C +I R L P+AK Y+M M + + I + +++W P A+ RL
Sbjct: 24 KLYEAPATCLSIFRLLSPMAKFYIMSMIFNEKPIALRDLDKWCKPSARKLEFEALKRLES 83
Query: 85 LRLFSEEKKKETTYRLNSTFQSNLRKHLIYGGALPRE--PMPSGITARLPTLEDLEAYAI 142
L L E K + RL+S F+ N R L G P + + + + L+ +A
Sbjct: 84 LHLI-EYDSKGSHVRLHSIFRKNFRDCLT-GSQNPNAFGSISTTVDKHKVDIPFLDLFAS 141
Query: 143 GQWECFLLQLISSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQ 202
+WE L ++ + P++ S++K+ GL+ + + R+T SGFQFLL D NAQ
Sbjct: 142 QKWETILHFMVGTESTATPSDSVLSLLKL--GGLMEGPNNDL-RITNSGFQFLLQDVNAQ 198
Query: 203 LWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLV 262
+W ++ +Y++ +QE ++ D+++F+ L G++Y++ +LSE Q SM+ D D GLV
Sbjct: 199 IWTLLLQYLNLTQELNMDPVDVLNFIFVLGSLELGKSYSVLSLSETQVSMLADLKDYGLV 258
Query: 263 KLQQGRKENWFIPTKLATNL----------SMSLTDSS---ARKEGFIVVETNFRMYAYS 309
Q+ F PT+LAT L SM++ + A KE I++ETNF++YAY+
Sbjct: 259 -YQRSDTSGRFYPTRLATTLTSDSAALKTPSMAMDEEEQQVATKES-IIIETNFKIYAYT 316
Query: 310 TSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV 366
S L IL LF + + N++ G IT+ES+ NA NGITA+QII FL+ +AHP++
Sbjct: 317 KSPLEIAILNLFVHFKTRFANMVCGQITRESIRNALYNGITADQIIKFLETHAHPQM 373
Score = 74 (31.1 bits), Expect = 7.8e-54, Sum P(2) = 7.8e-54
Identities = 11/37 (29%), Positives = 25/37 (67%)
Query: 369 RMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSR 405
++ +P NV DQI+LW+ +L+R++ + + +F ++
Sbjct: 412 KLEILPPNVVDQIKLWQLELDRIQTFDGYLFKDFSNQ 448
>SGD|S000006043 [details] [associations]
symbol:TFB2 "Subunit of TFIIH and nucleotide excision repair
factor 3 complexes" species:4932 "Saccharomyces cerevisiae"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA;IMP] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0000990 "core
RNA polymerase binding transcription factor activity" evidence=IC]
[GO:0000439 "core TFIIH complex" evidence=IEA;IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0070816 "phosphorylation of RNA polymerase II C-terminal
domain" evidence=IDA] [GO:0005675 "holo TFIIH complex"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0000112 "nucleotide-excision repair factor 3
complex" evidence=IPI] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] InterPro:IPR004598 Pfam:PF03849 SGD:S000006043
GO:GO:0006366 EMBL:BK006949 GO:GO:0003690 EMBL:U43503 GO:GO:0006289
GO:GO:0070816 GO:GO:0005675 GO:GO:0000439 GO:GO:0000112
eggNOG:COG5144 KO:K03144 PANTHER:PTHR13152 HOGENOM:HOG000170529
OMA:CVLHYMV TIGRFAMs:TIGR00625 GeneTree:ENSGT00390000014159
OrthoDB:EOG4CZFQD EMBL:U62804 PIR:S62000 RefSeq:NP_015203.1
PDB:3DGP PDB:3DOM PDBsum:3DGP PDBsum:3DOM ProteinModelPortal:Q02939
SMR:Q02939 DIP:DIP-5783N IntAct:Q02939 MINT:MINT-2785444
STRING:Q02939 PaxDb:Q02939 PeptideAtlas:Q02939 EnsemblFungi:YPL122C
GeneID:855981 KEGG:sce:YPL122C CYGD:YPL122c
EvolutionaryTrace:Q02939 NextBio:980816 Genevestigator:Q02939
GermOnline:YPL122C Uniprot:Q02939
Length = 513
Score = 329 (120.9 bits), Expect = 4.3e-53, Sum P(3) = 4.3e-53
Identities = 81/262 (30%), Positives = 140/262 (53%)
Query: 24 DRLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLV 83
+RLY +P C AI R LPPLAK ++M M + + +P +++WV +G + + AI +
Sbjct: 23 NRLYTSPATCLAIYRILPPLAKFFIMAMVFNENEVPLLDLDKWVNSNGKLQFQNAIKSMK 82
Query: 84 QLRLFSEEKKKETTY-RLNSTFQSNLRKHLIYGGALPREPMPSGITARLPTLEDLEAYAI 142
L L K T LN TF+ +LR L GG + + + + +L+ L+ Y+
Sbjct: 83 SLHLLIPNKSSGTLMINLNPTFKISLRNALT-GGEV-QNSFGVVVEENVVSLDLLDEYSA 140
Query: 143 GQWECFLLQLISSTQAERPTNFSSSMMKVFQRGLLSRRDKEAP-RLTESGFQFLLMDTNA 201
+WE L ++ + A+ P+ +++K L+ + ++T GFQFLL + N+
Sbjct: 141 NKWETILHFMVGTPLAKIPSEKVLNLLK--HSKLMEEVNSTGEFKITNEGFQFLLQEINS 198
Query: 202 QLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGL 261
QLW ++ +Y+ + ++ D++ F+ L G+AY ++ LSE Q+ M++D D GL
Sbjct: 199 QLWTLLLQYLKMIETSKMDLVDVLHFIFMLGALEVGKAYKIDALSETQRIMLQDMRDYGL 258
Query: 262 VKLQQGRKENWFIPTKLATNLS 283
V Q+ ++ F PTKLA L+
Sbjct: 259 V-FQKHSNDSIFYPTKLALMLT 279
Score = 187 (70.9 bits), Expect = 4.3e-53, Sum P(3) = 4.3e-53
Identities = 33/73 (45%), Positives = 55/73 (75%)
Query: 294 EGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQ 353
+G ++VETNF++Y+YS S L +L LF ++ + N+++G IT+ES+ A NGITA+Q
Sbjct: 336 DGSLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQITRESIRRALTNGITADQ 395
Query: 354 IISFLQQNAHPRV 366
II++L+ +AHP++
Sbjct: 396 IIAYLETHAHPQM 408
Score = 71 (30.1 bits), Expect = 4.3e-53, Sum P(3) = 4.3e-53
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 364 PRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEF 402
P + + +P V DQIRLW+ +L+RV Y +F
Sbjct: 424 PNCKEPLQVLPPTVVDQIRLWQLELDRVITYEGSLYSDF 462
>UNIPROTKB|G4NCE6 [details] [associations]
symbol:MGG_00397 "RNA polymerase II transcription factor B
subunit 2" species:242507 "Magnaporthe oryzae 70-15" [GO:0043581
"mycelium development" evidence=IEP] InterPro:IPR004598
Pfam:PF03849 GO:GO:0005634 GO:GO:0006355 EMBL:CM001235
GO:GO:0006281 GO:GO:0043581 KO:K03144 PANTHER:PTHR13152
TIGRFAMs:TIGR00625 RefSeq:XP_003718679.1 EnsemblFungi:MGG_00397T0
GeneID:2674140 KEGG:mgr:MGG_00397 Uniprot:G4NCE6
Length = 490
Score = 385 (140.6 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
Identities = 89/254 (35%), Positives = 148/254 (58%)
Query: 173 QRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQA-DLISFLLEL 231
Q GL+ RR E +T++GF FLL + NAQ+W ++ +++ + E N+A D++SFL L
Sbjct: 189 QGGLVQRRSSERISITKTGFTFLLQEANAQVWTLLLQWLHSVNEDNTNRAVDMLSFLFML 248
Query: 232 SFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNL--------S 283
G+AY+ LSE +++M+ D D GLV + + +F PT+LAT L S
Sbjct: 249 GTLELGQAYDTGALSEERRNMLPDLNDFGLVYIPPSNPDQYF-PTRLATTLTSGSSALRS 307
Query: 284 MSLTDSSARKE-------GFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAI 336
+S ++A E G I++ETNFR+YAY+++ L IL LF+ ++ + ++ G +
Sbjct: 308 VSSGVAAATAEAGENNTKGAIILETNFRIYAYTSTPLQIAILALFANLKMRFAGMVTGQL 367
Query: 337 TKESLYNAFENGITAEQIISFLQQNAHP---RVAD--RMPSVPENVCDQIRLWESDLNRV 391
++ S+ A +GITA+QII +L +AH R+A P +P V DQIRLW+ + R+
Sbjct: 368 SRHSIKRAISHGITADQIIEYLASHAHEQMHRIAAIRNKPVLPPTVVDQIRLWQLETERM 427
Query: 392 EMTPAHYYDEFPSR 405
++ + + +F S+
Sbjct: 428 QVQRGYLFKDFESQ 441
Score = 135 (52.6 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
Identities = 46/168 (27%), Positives = 84/168 (50%)
Query: 25 RLYENPFICEAILRS-LPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHR---VAID 80
+LY+ P AI R LPPLAK +VM + Y+ +P ++ WV P+ K++ ++I
Sbjct: 23 KLYQQPATAFAIFRRMLPPLAKTFVMSLLYMPQPLPLTALDSWVKPEA-KKNKDQALSIL 81
Query: 81 RLVQLRLFSEEKKKETTYRLNST--FQSNLRKHLIYGGALPREPMPSGITARLPTLED-- 136
R + + + K++ ++ T F+ +LR L GG+ +PS + +P D
Sbjct: 82 RSMHITTITPVTKEKPVQEMSLTPNFKKSLRLALEGGGSHNSFGVPSSLP--IPPQVDVA 139
Query: 137 -LEAYAIGQWECFLLQLISS---TQAERPT---NFSSSMMKVFQRGLL 177
L+ +A +W+ L +++S T + P+ NF S ++ + LL
Sbjct: 140 FLDKWARSRWDAILHYVVNSVEETDSMEPSKKYNFGGSKLQDTVKTLL 187
>WB|WBGene00013529 [details] [associations]
symbol:Y73F8A.24 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] InterPro:IPR004598 Pfam:PF03849
GO:GO:0005634 GO:GO:0009792 GO:GO:0006355 GO:GO:0006281
GO:GO:0040035 EMBL:AL132862 eggNOG:COG5144 KO:K03144 OMA:PVNCLPI
PANTHER:PTHR13152 GeneTree:ENSGT00390000014159 GeneID:178431
KEGG:cel:CELE_Y73F8A.24 CTD:178431 RefSeq:NP_001255863.1
ProteinModelPortal:Q9NA35 SMR:Q9NA35 STRING:Q9NA35 PaxDb:Q9NA35
EnsemblMetazoa:Y73F8A.24a UCSC:Y73F8A.24 WormBase:Y73F8A.24a
HOGENOM:HOG000020092 InParanoid:Q9NA35 NextBio:901110
ArrayExpress:Q9NA35 Uniprot:Q9NA35
Length = 481
Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
Identities = 123/409 (30%), Positives = 212/409 (51%)
Query: 11 FMDMVASLTARDLDRLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIP-AKMMEEWVLP 69
F+D + ++ + RL + P I R LPP+A++ +Q+ + G+ P A +EE
Sbjct: 23 FLDFLITIPPKTRQRLLQKPSCAFFIYRMLPPIAQQTTIQLIW-KGSFPTASDVEETKEI 81
Query: 70 DGFTKHRVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLRKHLIYGGALPREPMPSGITA 129
+ K + LV + + +T Y+ + + + L I +L EP
Sbjct: 82 EDQVKLLKDLG-LVHRQTTDGKLNIDTDYKRSYMYAAMLGAAQI--SSLVLEPNEGNRRG 138
Query: 130 RLPTLEDLEAYAIGQWECFLLQLISSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTE 189
+ D+E A+ +W+C +L+ ++ E S + +F++ + +T
Sbjct: 139 K-----DVEKKAVERWDC-ILRYLALPSEENTQAVSETTRNLFKKANFTSGGDTQIEITT 192
Query: 190 SGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLEL------SFHVAGEAYNLN 243
GFQFLL+ Q+W V EY+ +G + ++I L+++ F E Y ++
Sbjct: 193 FGFQFLLLSPVKQMWTYVIEYLKLEMSQGQDIVEVIEPLIQIVLLANRGFKAERECYQID 252
Query: 244 T-LSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLT--DSSARK--EGFIV 298
+E Q ++ +LG++ +++ RK+ F T+L T+L+ + T D SA K G ++
Sbjct: 253 ANWTEPQNELLNHLRELGVIFIRK-RKDGVFFLTQLLTHLATNETIDDVSAEKVSNGKVI 311
Query: 299 VETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFL 358
VETNFR+YAY++S L I+ LF+++ Y+ ++ VG IT+ES+ A ++GITA QIISFL
Sbjct: 312 VETNFRVYAYTSSLLQLAIIALFTEMTYRFQDMSVGMITRESVRGALQHGITAAQIISFL 371
Query: 359 QQNAHPR-VADRMP--SVPENVCDQIRLWESDLNRVEMTPAHYYDEFPS 404
+ NAHP+ +A P +P V DQIRLWE + R+ + A+ Y F S
Sbjct: 372 RANAHPQCIATSGPVNCLPITVADQIRLWEDERRRMNLKDAYIYSHFES 420
>ASPGD|ASPL0000068300 [details] [associations]
symbol:AN7015 species:162425 "Emericella nidulans"
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR004598 Pfam:PF03849
GO:GO:0005634 GO:GO:0006355 GO:GO:0006281 EMBL:BN001304
EMBL:AACD01000117 eggNOG:COG5144 KO:K03144 PANTHER:PTHR13152
HOGENOM:HOG000170529 OMA:CVLHYMV TIGRFAMs:TIGR00625
OrthoDB:EOG4CZFQD RefSeq:XP_664619.1 STRING:Q5AXG5
EnsemblFungi:CADANIAT00000461 GeneID:2870093 KEGG:ani:AN7015.2
Uniprot:Q5AXG5
Length = 482
Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
Identities = 96/276 (34%), Positives = 157/276 (56%)
Query: 159 ERPTNFSSSMMKVFQRG-LLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQER 217
+R N S + ++ Q G L+ RD+ +T+ GF F+L D Q+W+I+ Y+ +++
Sbjct: 166 QRDVNLSKGVKQLLQAGHLVEIRDRRV-EITQDGFAFVLQDVGTQVWHILILYVESAEAI 224
Query: 218 GINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTK 277
G++ +++SF+ LS G++Y L+ Q + D AD G+V Q + + F PT+
Sbjct: 225 GMDSVEVLSFIFLLSSLELGKSYEKKHLTSNQLRTLTDLADFGIV-YQDSPEASHFYPTR 283
Query: 278 LATNL---SMSLT-------------DSSARKEGFIVVETNFRMYAYSTSKLHCEILRLF 321
LAT L S +L+ DS+ GFI++ETN+R+YAY++S L ++ LF
Sbjct: 284 LATTLTSDSSALSNPISGALSDPDGGDSNQPGSGFIIIETNYRLYAYTSSPLQISLIALF 343
Query: 322 SKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------------ADR 369
+ ++Y+ PNL+ G +T++S+ A E GITA+QIIS+L +AHP++ A
Sbjct: 344 TTLKYRFPNLVTGKVTRQSIRRAIEMGITADQIISYLATHAHPQMRKHNVARSTSNQAGM 403
Query: 370 MPSV-PENVCDQIRLWESDLNRVEMTPAHYYDEFPS 404
PSV P V DQIRLW+ + +RV+ T + +F S
Sbjct: 404 PPSVLPPTVVDQIRLWQLERDRVKATAGFLFKDFVS 439
Score = 305 (112.4 bits), Expect = 7.2e-27, P = 7.2e-27
Identities = 90/295 (30%), Positives = 147/295 (49%)
Query: 13 DMVASLTARDLDRLYENPFICEAILRS-LPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDG 71
D + SL +LY+ P AI R LP LAK +VM + Y+ +PA +E WV +
Sbjct: 9 DYLESLPGTVFFKLYQQPSTALAIFRRMLPDLAKCFVMALLYLKDPLPAADLETWVRSES 68
Query: 72 ----FTKHR-VAIDRLVQLRLFSEEKKKETT--YRLNSTFQSNLRKHLIYGGALPREPMP 124
F + R A+ L +L + + Y + F ++LR+ L GA +E
Sbjct: 69 LRLSFLRERDSALSILGRLHILTNTTTSGNVRAYMVTDPFAASLRQALT--GA--KETQS 124
Query: 125 SGITARLPT-----LEDLEAYAIGQWECFLLQLI--SSTQAERPTNFSSSMMKVFQRG-L 176
G+ +P + DL+ YA QWE L ++ S +R N S + ++ Q G L
Sbjct: 125 FGVLHHIPDDQTVPIHDLDEYARRQWEGVLGYMVGTSGLGIQRDVNLSKGVKQLLQAGHL 184
Query: 177 LSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVA 236
+ RD+ +T+ GF F+L D Q+W+I+ Y+ +++ G++ +++SF+ LS
Sbjct: 185 VEIRDRRV-EITQDGFAFVLQDVGTQVWHILILYVESAEAIGMDSVEVLSFIFLLSSLEL 243
Query: 237 GEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSA 291
G++Y L+ Q + D AD G+V Q + + F PT+LAT L+ +DSSA
Sbjct: 244 GKSYEKKHLTSNQLRTLTDLADFGIV-YQDSPEASHFYPTRLATTLT---SDSSA 294
>UNIPROTKB|B4DTJ5 [details] [associations]
symbol:GTF2H4 "cDNA FLJ50212, highly similar to TFIIH basal
transcription factor complex p52 subunit" species:9606 "Homo
sapiens" [GO:0000439 "core TFIIH complex" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR004598
Pfam:PF03849 GO:GO:0005634 GO:GO:0006355 GO:GO:0006281
EMBL:CR759747 EMBL:AL662854 EMBL:AL662870 EMBL:AL773541
EMBL:BX927194 EMBL:AL669830 EMBL:CR936875 PANTHER:PTHR13152
UniGene:Hs.485070 HGNC:HGNC:4658 TIGRFAMs:TIGR00625 EMBL:AK300239
IPI:IPI01015708 STRING:B4DTJ5 Ensembl:ENST00000539324
Ensembl:ENST00000547731 Ensembl:ENST00000549684
Ensembl:ENST00000551614 Ensembl:ENST00000551657
Ensembl:ENST00000552174 UCSC:uc011dmv.1 Uniprot:B4DTJ5
Length = 220
Score = 241 (89.9 bits), Expect = 5.1e-20, P = 5.1e-20
Identities = 65/219 (29%), Positives = 112/219 (51%)
Query: 49 MQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQ-LRLFSEEKKKETTYRL--NSTFQ 105
M+M +++ +P + WV + F+K + L+ LR++ + L N F+
Sbjct: 1 MRMLFLEQPLPQAAVALWVKKE-FSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFR 59
Query: 106 SNLRKHLIYGG-ALPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSTQAERPTNF 164
NLR L+ GG A + G + L+ YA +WE L ++ S A +
Sbjct: 60 QNLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDL 119
Query: 165 SSSMMKVFQRGLL-SRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQAD 223
+ + Q GL+ S E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +
Sbjct: 120 AQLLS---QAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVE 176
Query: 224 LISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLV 262
++SFL +LSF G+ Y++ +S+ + ++ + GLV
Sbjct: 177 ILSFLFQLSFSTLGKDYSVEGMSDSLLNFLQHLREFGLV 215
>UNIPROTKB|A2ABL5 [details] [associations]
symbol:GTF2H4 "General transcription factor IIH subunit 4"
species:9606 "Homo sapiens" [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] InterPro:IPR004598 Pfam:PF03849 GO:GO:0005634
GO:GO:0006355 GO:GO:0006281 EMBL:CR759747 EMBL:AL662854
EMBL:AL662870 EMBL:AL773541 EMBL:BX927194 EMBL:AL669830
EMBL:CR936875 eggNOG:COG5144 PANTHER:PTHR13152 HGNC:HGNC:4658
IPI:IPI00798015 Ensembl:ENST00000416161 Ensembl:ENST00000423849
Ensembl:ENST00000430576 Ensembl:ENST00000453897
Ensembl:ENST00000454718 Ensembl:ENST00000456195
HOGENOM:HOG000197779 Uniprot:A2ABL5
Length = 138
Score = 132 (51.5 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 36/115 (31%), Positives = 59/115 (51%)
Query: 4 VKIIAKNFMDMVASLTARDLDRLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMM 63
V + +N + + L+ LDRLY +P C A+ R LP LAK +VM+M +++ +P +
Sbjct: 12 VHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAV 71
Query: 64 EEWVLPDGFTKHRVAIDRLVQ-LRLFSEEKKKETTYRL--NSTFQSNLRKHLIYG 115
WV + F+K + L+ LR++ + L N F+ NLR L+ G
Sbjct: 72 ALWVKKE-FSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGG 125
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.135 0.392 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 407 407 0.00078 118 3 11 22 0.36 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 610 (65 KB)
Total size of DFA: 251 KB (2135 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 32.37u 0.18s 32.55t Elapsed: 00:00:02
Total cpu time: 32.38u 0.18s 32.56t Elapsed: 00:00:02
Start: Fri May 10 23:32:37 2013 End: Fri May 10 23:32:39 2013