BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015409
(407 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P60027|TF2H4_PANTR General transcription factor IIH subunit 4 OS=Pan troglodytes
GN=GTF2H4 PE=3 SV=1
Length = 462
Score = 251 bits (641), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 143/409 (34%), Positives = 230/409 (56%), Gaps = 10/409 (2%)
Query: 4 VKIIAKNFMDMVASLTARDLDRLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMM 63
V + +N + + L+ LDRLY +P C A+ R LP LAK +VM+M +++ +P +
Sbjct: 12 VHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAV 71
Query: 64 EEWVLPDGFTKHRVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLRKHLIYGG-ALPR 120
WV + + L LR++ + LN F+ NLR L+ GG A
Sbjct: 72 ALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWSD 131
Query: 121 EPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSTQAERPTNFSSSMMKVFQRGLL-SR 179
+ G + L+ YA +WE L ++ S A + + + Q GL+ S
Sbjct: 132 DTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS---QAGLMKST 188
Query: 180 RDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEA 239
E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+
Sbjct: 189 EPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKD 248
Query: 240 YNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSA--RKEGFI 297
Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ + + GFI
Sbjct: 249 YSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFI 307
Query: 298 VVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISF 357
VVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII F
Sbjct: 308 VVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHF 367
Query: 358 LQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRV 406
L+ AHP + + P +P + DQIRLWE + +R+ T Y++F S+V
Sbjct: 368 LRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQV 416
>sp|Q92759|TF2H4_HUMAN General transcription factor IIH subunit 4 OS=Homo sapiens
GN=GTF2H4 PE=2 SV=1
Length = 462
Score = 251 bits (641), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 143/409 (34%), Positives = 230/409 (56%), Gaps = 10/409 (2%)
Query: 4 VKIIAKNFMDMVASLTARDLDRLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMM 63
V + +N + + L+ LDRLY +P C A+ R LP LAK +VM+M +++ +P +
Sbjct: 12 VHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAV 71
Query: 64 EEWVLPDGFTKHRVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLRKHLIYGG-ALPR 120
WV + + L LR++ + LN F+ NLR L+ GG A
Sbjct: 72 ALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWSD 131
Query: 121 EPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSTQAERPTNFSSSMMKVFQRGLL-SR 179
+ G + L+ YA +WE L ++ S A + + + Q GL+ S
Sbjct: 132 DTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS---QAGLMKST 188
Query: 180 RDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEA 239
E P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+
Sbjct: 189 EPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKD 248
Query: 240 YNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSA--RKEGFI 297
Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS ++ + + GFI
Sbjct: 249 YSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFI 307
Query: 298 VVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISF 357
VVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII F
Sbjct: 308 VVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHF 367
Query: 358 LQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRV 406
L+ AHP + + P +P + DQIRLWE + +R+ T Y++F S+V
Sbjct: 368 LRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQV 416
>sp|O70422|TF2H4_MOUSE General transcription factor IIH subunit 4 OS=Mus musculus
GN=Gtf2h4 PE=2 SV=1
Length = 463
Score = 249 bits (637), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 142/405 (35%), Positives = 228/405 (56%), Gaps = 10/405 (2%)
Query: 8 AKNFMDMVASLTARDLDRLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWV 67
+N + + L+ LDRLY +P C A+ R LP LAK +VM+M +++ +P + WV
Sbjct: 17 CRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAVALWV 76
Query: 68 LPDGFTKHRVAIDRLVQLRLFSEE--KKKETTYRLNSTFQSNLRKHLIYGG-ALPREPMP 124
+ + L LR++ + LN F+ NLR L+ GG A +
Sbjct: 77 KKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPVFRQNLRIALLGGGKAWSDDTSQ 136
Query: 125 SGITARLPTLEDLEAYAIGQWECFLLQLISSTQAERPTNFSSSMMKVFQRGLL-SRRDKE 183
G + L+ YA +WE L ++ S A + + + Q GL+ S E
Sbjct: 137 LGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS---QAGLMKSTEPGE 193
Query: 184 APRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLN 243
P +T +GFQFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y++
Sbjct: 194 PPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYSVE 253
Query: 244 TLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSA--RKEGFIVVET 301
+S+ + ++ + GLV Q+ RK + PT+LA NLS ++ + + GFIVVET
Sbjct: 254 GMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVET 312
Query: 302 NFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQN 361
N+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+
Sbjct: 313 NYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTR 372
Query: 362 AHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRV 406
AHP + + P +P + DQIRLWE + +R+ T Y++F S+V
Sbjct: 373 AHPVMLKQNPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQV 417
>sp|P87303|TFB2_SCHPO RNA polymerase II transcription factor B subunit 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tfb2 PE=1 SV=2
Length = 447
Score = 221 bits (563), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 128/385 (33%), Positives = 212/385 (55%), Gaps = 14/385 (3%)
Query: 25 RLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQ 84
RLY+ P C A+ R LP LA++YVM M + + + W+ + ++LV+
Sbjct: 21 RLYQKPAACLAVFRLLPILARQYVMSMLFNPMPVALSDFDLWIKLSSKVYQSESFNKLVR 80
Query: 85 LRLFSEEKKKETTYRLNSTFQSNLRKHLIYGGALPREPMP-SGITARLPTLEDLEAYAIG 143
+ +F + + T LNS F+ L GG +P + L T++ L+AYA
Sbjct: 81 MHIFQFDGQYIT---LNSEFRKQFITALTGGGNHNSFGVPCTDEDKHLVTVDFLDAYAKE 137
Query: 144 QWECFLLQLISSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQL 203
WE L ++ + +A+ P ++ + +RG L K R+T +GFQFLL D NAQ+
Sbjct: 138 TWETILHFMVGTPEAKFP---GEGVLSLLKRGGLMSGPKNQLRITRAGFQFLLQDINAQI 194
Query: 204 WYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVK 263
W ++ +Y+ S++ ++ ++ FL L G AY+++ L++ Q+ M++D + GLV
Sbjct: 195 WTLLLDYLKLSEDTHMDPVQVLHFLFMLGSLDLGRAYSVDFLTDTQQIMLEDLREYGLV- 253
Query: 264 LQQGRKENWFIPTKLATNLSMSLTDSSARK------EGFIVVETNFRMYAYSTSKLHCEI 317
Q+ F PT+LAT L+ ++ +GFI+VETN+R+YAY++S L I
Sbjct: 254 YQRKITSKRFYPTRLATGLTTDYRSLHGKQSENDDDKGFIIVETNYRLYAYTSSPLQIAI 313
Query: 318 LRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENV 377
+ LF+ + + NL+VG IT++S+ A NGI AEQII++L +AHP++ +P +P +
Sbjct: 314 IGLFANLRARFSNLVVGVITRDSIRRALMNGIAAEQIITYLTTHAHPQMRSNVPLLPPTL 373
Query: 378 CDQIRLWESDLNRVEMTPAHYYDEF 402
DQI LWE + NR+ TP + +F
Sbjct: 374 VDQIYLWELEKNRLRATPGILFRDF 398
>sp|Q6BZX4|TFB2_YARLI RNA polymerase II transcription factor B subunit 2 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=TFB2 PE=3 SV=1
Length = 467
Score = 220 bits (560), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 129/409 (31%), Positives = 217/409 (53%), Gaps = 26/409 (6%)
Query: 13 DMVASLTARDLDRLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGF 72
D + L L RLY++P C A+ R LP LA+ +M M + I ++ V P
Sbjct: 11 DYLEGLPEAVLTRLYQSPATCLAVFRLLPALARTLIMGMIFNPDPIAVADVDALVKP--- 67
Query: 73 TKHRVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLRKHLIYGGALPREPMPSGITARLP 132
+ R+ ++ +LRL + + +N TF+ NLR L+ G +P +
Sbjct: 68 SSQRLKLETQKKLRLLHIFTETQAHIIINPTFKKNLRAALVGGDQNISFGVPCDTEDKHK 127
Query: 133 T-LEDLEAYAIGQWECFLLQLISSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESG 191
+ L+A+A+ QWE L ++ ++ P S ++ + + L ++ R+T +G
Sbjct: 128 VDVAFLDAHAVSQWEMILHFMVGTSIGRTP---SDGVLNLLKHSGLMEPERGGLRITNAG 184
Query: 192 FQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKS 251
FQFLL D NAQ+W ++ +Y++ S+ ++ D+++F+ L G+ Y+L+ LSE QK
Sbjct: 185 FQFLLQDVNAQIWTLLLQYLNMSEYLQMDPVDVLNFIFMLGSLELGQDYSLSALSETQKH 244
Query: 252 MIKDFADLGLVKLQQGRKENWFIPTKLATNLSM------------------SLTDSSARK 293
M++D D G+V Q+ F PT+LAT L+ +++ S A
Sbjct: 245 MLEDLRDYGIV-YQRKASSRRFYPTRLATTLTSETAALRTASQSMEAATQDTISSSVAAD 303
Query: 294 EGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQ 353
GFI++ETNFR+YAY+ S L +L LF ++ + N++ G I ++S+ A NGITAEQ
Sbjct: 304 SGFIILETNFRLYAYTESPLQIAVLNLFVNLKTRFANMVTGQINRDSVRFALSNGITAEQ 363
Query: 354 IISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEF 402
II++L +AHPR+ +P V DQI+LW+ +++R+ T + + EF
Sbjct: 364 IITYLSVHAHPRMKGMEHVLPPTVVDQIKLWQLEMDRIRATDGYLFSEF 412
>sp|Q54C29|TF2H4_DICDI General transcription factor IIH subunit 4 OS=Dictyostelium
discoideum GN=gtf2h4 PE=3 SV=1
Length = 483
Score = 216 bits (550), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 138/435 (31%), Positives = 238/435 (54%), Gaps = 52/435 (11%)
Query: 15 VASLTARDLDRLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTK 74
+ASL ++DL+ LY++P+ C+AILRSLPP +K+Y+++M +D P + ++W +
Sbjct: 10 LASLDSKDLEELYKDPWTCQAILRSLPPRSKQYILKMLLVD-TYPLSLAKDWSTQASIQQ 68
Query: 75 HRVAIDRLVQLRLFSEEK-----------------------------KKETTYRLNSTFQ 105
H+ ++ +L L++ +K + E T RLN FQ
Sbjct: 69 HKESLKKLFDLKIIFLDKINKPIQPQQQQSSQQSSSQQQQQQQQQQQQTEQTIRLNPLFQ 128
Query: 106 SNLRKHLIYGGALPREPMPS-GITARLPTLEDLEAYAIGQWECFLLQLISSTQAERPTNF 164
N+++ L+ + S + P+++DL++Y+ QWE L L S +P+
Sbjct: 129 DNIKRSLVQVNQVIFSNNSSIKDNHKPPSIDDLDSYSKSQWEKVLYFL--SDDTVQPSKL 186
Query: 165 SSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQER----GIN 220
S ++ L++++ + +T GF+FLL D Q+W ++ Y+ + +++ +
Sbjct: 187 ISELL---LSSNLTKQEGDGLSITSEGFKFLLKDVYTQIWTLLIVYLDDLEKKKGKGSGS 243
Query: 221 QADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLAT 280
+ DL+SFL LSF G Y ++ LSE QK + GL+ ++ F PT+L
Sbjct: 244 RNDLLSFLFRLSFLNLGRGYLVSELSEQQKEYLFALKQFGLIYMRTD-SSILFYPTRLII 302
Query: 281 NLS----MSLTDS-------SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLP 329
+L+ +SL S + +++G+IV+ETN+R+YAY++S L +L LF K+ Y+LP
Sbjct: 303 SLTTGKTLSLIQSISSERTQTQKEQGYIVLETNYRLYAYTSSSLQISLLSLFVKMLYRLP 362
Query: 330 NLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLN 389
NL VG IT+ES+ A +GITA+QII F++ N+HP A+ +P+ V +QI LWE++ N
Sbjct: 363 NLAVGIITRESIRTALIHGITADQIIDFVRHNSHPNAANSGQPIPDVVAEQILLWEAERN 422
Query: 390 RVEMTPAHYYDEFPS 404
R+ T + Y+ FP+
Sbjct: 423 RITYTKSVLYNSFPT 437
>sp|Q6BGW8|TFB2_DEBHA RNA polymerase II transcription factor B subunit 2 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=TFB2 PE=3 SV=2
Length = 515
Score = 209 bits (531), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 138/459 (30%), Positives = 225/459 (49%), Gaps = 92/459 (20%)
Query: 25 RLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQ 84
RLYE P C +I R LPP+AK Y+M M + + + K +++W P T + D L +
Sbjct: 25 RLYEAPATCLSIYRLLPPIAKFYIMTMLFYETPVALKDLDKWCKP---TSRKFQFDSLKR 81
Query: 85 LRLFS--EEKKKETTYRLNSTFQSNLRKHLIYG------GALPREPMPSGITARLPTLED 136
LR EE + RL+ TF+ N R L G L P ++ +
Sbjct: 82 LRALHLIEEDSSGSHIRLHPTFRQNFRDCLTGSQARNAFGNLSTTPDEQSVSIKF----- 136
Query: 137 LEAYAIGQWECFLLQLISSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRL--TESGFQF 194
L+++A+ +WE L ++ + + P+N S++K GL+ +K RL T SGFQF
Sbjct: 137 LDSFALQKWESILHFMVGTELSVTPSNSVLSLLK--SGGLMEGTNKGGNRLNITNSGFQF 194
Query: 195 LLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIK 254
LL D NAQ+W ++ +Y++ +Q+ ++ D+++F+ L G+ Y +++LSE Q SM+
Sbjct: 195 LLQDINAQIWTLLLQYLNLTQDLNMDPVDVLNFIFILGSLELGKGYTVSSLSETQISMLA 254
Query: 255 DFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSARK--------------------- 293
D D GL+ Q+ F PT+LAT L+ +DS+A K
Sbjct: 255 DLRDYGLI-YQRSENSERFYPTRLATTLT---SDSAALKSPSMAMEQALESTTETEEQQN 310
Query: 294 ------EGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFEN 347
+G I++ETNF++YAY+ S L IL LF ++ + N++ G IT+ES+ NA N
Sbjct: 311 LASNSNQGTIILETNFKIYAYTNSPLEIAILNLFVHLKTRFSNMVCGQITRESIRNALYN 370
Query: 348 GITAEQIISFLQQNAHPRVA---------------------------------------- 367
GITA+QII FL+ +AH ++
Sbjct: 371 GITADQIIKFLETHAHSQMKILAKERLDKKIEFDTSNNINTAGGAPQSQMMTNENGTTVA 430
Query: 368 -DRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSR 405
++ +P V DQI+LW+ +L+R++ + + +F S+
Sbjct: 431 QHKLEVLPPTVVDQIKLWQLELDRIQTFEGYLFKDFASQ 469
>sp|Q6CLR2|TFB2_KLULA RNA polymerase II transcription factor B subunit 2 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=TFB2 PE=3 SV=1
Length = 496
Score = 204 bits (518), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 129/431 (29%), Positives = 216/431 (50%), Gaps = 56/431 (12%)
Query: 25 RLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQ 84
RLYE+P C AI R L P+AK ++M M + D + + +++WV PD + + +I +
Sbjct: 24 RLYESPATCLAIYRLLSPMAKFFIMSMLFQDHDVSLRDLDKWVKPDAKYQLQYSIKSMKS 83
Query: 85 LRLFSE-EKKKETTYRLNSTFQSNLRKHLIYGGALPREPMPSGITARLP-TLEDLEAYAI 142
L L E E K+ RLN F+ + K+++ GG + P + L+ Y+
Sbjct: 84 LNLIIEGESKQPLLIRLNPIFKKSF-KNVLTGGEINNSFGDVADDDTNPVSTATLDQYSA 142
Query: 143 GQWECFLLQLISSTQAERPTNFSSSMMKVFQR-GLLSRRDKEAPRLTESGFQFLLMDTNA 201
+WE L ++ + P ++ + Q GL+ + ++T GFQFLL D NA
Sbjct: 143 EKWETILHYMVGTPNTNTP---GGKVLDLLQHSGLMEEAEYGELKITNQGFQFLLQDVNA 199
Query: 202 QLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGL 261
Q+W ++ +Y+ ++ ++ D+++F+ L G+AY + LS Q++M++D D GL
Sbjct: 200 QMWTLLLQYLKMAESLQMDPVDVLNFIFMLGALQLGKAYKCDQLSNTQRTMLQDMRDYGL 259
Query: 262 VKLQQGRKENWFIPTKLAT-----------------------NLSMSLTDSSARKE---- 294
+ Q F PT+LAT N + ++ S + E
Sbjct: 260 IYQNQSDYAK-FYPTRLATLLTSDTKAFRSASVALDSVLNKANETTAVEGDSGQDETTER 318
Query: 295 ---GFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITA 351
G +++ETNF++Y+YS S L IL LF ++ + N++ G +T+ES+ NA NGITA
Sbjct: 319 TQDGALIIETNFKLYSYSNSPLQIAILSLFVHLKSRFANMVTGQLTRESVRNALLNGITA 378
Query: 352 EQIISFLQQNAHPR------------------VADRMPSVPENVCDQIRLWESDLNRVEM 393
EQII++L+ +AHPR V + + +P V DQIRLW+ +L+R+
Sbjct: 379 EQIIAYLETHAHPRMRRLAEENLSKKLELDPTVKETLQVLPPTVVDQIRLWQLELDRIIS 438
Query: 394 TPAHYYDEFPS 404
+ Y +F S
Sbjct: 439 YDGYLYTDFES 449
>sp|Q02939|TFB2_YEAST RNA polymerase II transcription factor B subunit 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TFB2 PE=1
SV=1
Length = 513
Score = 191 bits (486), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 130/447 (29%), Positives = 221/447 (49%), Gaps = 71/447 (15%)
Query: 24 DRLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLV 83
+RLY +P C AI R LPPLAK ++M M + + +P +++WV +G + + AI +
Sbjct: 23 NRLYTSPATCLAIYRILPPLAKFFIMAMVFNENEVPLLDLDKWVNSNGKLQFQNAIKSMK 82
Query: 84 QLRLFSEEKKKET-TYRLNSTFQSNLRKHLIYGGALPREPMPSGITARLPTLEDLEAYAI 142
L L K T LN TF+ +LR L GG + + + + +L+ L+ Y+
Sbjct: 83 SLHLLIPNKSSGTLMINLNPTFKISLRNALT-GGEV-QNSFGVVVEENVVSLDLLDEYSA 140
Query: 143 GQWECFLLQLISSTQAERPTNFSSSMMKVFQRGLLSRRDKEAP-RLTESGFQFLLMDTNA 201
+WE L ++ + A+ P+ +++K L+ + ++T GFQFLL + N+
Sbjct: 141 NKWETILHFMVGTPLAKIPSEKVLNLLK--HSKLMEEVNSTGEFKITNEGFQFLLQEINS 198
Query: 202 QLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGL 261
QLW ++ +Y+ + ++ D++ F+ L G+AY ++ LSE Q+ M++D D GL
Sbjct: 199 QLWTLLLQYLKMIETSKMDLVDVLHFIFMLGALEVGKAYKIDALSETQRIMLQDMRDYGL 258
Query: 262 VKLQQGRKENWFIPTKLATNLS---------MSLTDSSARK------------------- 293
V Q+ ++ F PTKLA L+ + DS R+
Sbjct: 259 V-FQKHSNDSIFYPTKLALMLTSDTKTIRSASNAMDSVLRQNREEPSVNEDGANGKSTTD 317
Query: 294 ------------------EGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGA 335
+G ++VETNF++Y+YS S L +L LF ++ + N+++G
Sbjct: 318 ITTSDDLNKAGLKNQDIPDGSLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQ 377
Query: 336 ITKESLYNAFENGITAEQIISFLQQNAHPRV------------------ADRMPSVPENV 377
IT+ES+ A NGITA+QII++L+ +AHP++ + + +P V
Sbjct: 378 ITRESIRRALTNGITADQIIAYLETHAHPQMRRLAEEKLEKKLELDPNCKEPLQVLPPTV 437
Query: 378 CDQIRLWESDLNRVEMTPAHYYDEFPS 404
DQIRLW+ +L+RV Y +F +
Sbjct: 438 VDQIRLWQLELDRVITYEGSLYSDFET 464
>sp|Q75B51|TFB2_ASHGO RNA polymerase II transcription factor B subunit 2 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=TFB2 PE=3 SV=1
Length = 514
Score = 191 bits (486), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 129/441 (29%), Positives = 222/441 (50%), Gaps = 72/441 (16%)
Query: 25 RLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQ 84
RLY++P C AI R L P+AK ++M M + D + + ++ WV PD + AI +
Sbjct: 33 RLYQSPATCLAIYRLLSPMAKFFIMSMIFQDEEVSLRDLDRWVKPDAKFQLHDAIKSMKL 92
Query: 85 LRLFSEEKKKE-TTYRLNSTFQSNLRKHLI-------YGGALPREPMPSGITARLPTLED 136
L L +E + + +LNS F+ + + L +G + E P T+
Sbjct: 93 LHLITEGRSGQPLMVQLNSIFKESFKNALTGGEVKNSFGNVVEEENDPV-------TMAM 145
Query: 137 LEAYAIGQWECFLLQLISSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLL 196
L++YA +WE L ++ + + P S+++ + + KE ++T GFQFLL
Sbjct: 146 LDSYAADKWETILHFMVGTPLTKSPGKNVLSLLRHSKLMEVDESSKEL-KITNEGFQFLL 204
Query: 197 MDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDF 256
D NAQ+W ++ +Y++ ++ ++ D+++ + + G+AY++ LSE QK+M++D
Sbjct: 205 QDANAQIWTLLLQYLTMAETFQMDPVDVLNLIFMIGALELGKAYSVVGLSETQKTMLQDL 264
Query: 257 ADLGLVKLQQGRKENWFIPTKLATNLS---MSLTDSSA--------RKEGF--------- 296
D GLV Q+ + F PT+LAT L+ +S+ +S R EG
Sbjct: 265 RDYGLV-FQKQSNLSKFYPTRLATMLTSDVVSIRSASGAVNSVLRQRAEGVDGKVLNGTA 323
Query: 297 -----------------IVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKE 339
++VETNF++Y+YS S L IL LF ++ + N++ G IT+E
Sbjct: 324 LGDDDLQAGGEGALDGALIVETNFKLYSYSNSPLQIAILSLFIHLKTRFQNMVTGQITRE 383
Query: 340 SLYNAFENGITAEQIISFLQQNAHP---RVA---------------DRMPSVPENVCDQI 381
S+ A NGITA+QII++++ +AHP R+A D + +P V DQI
Sbjct: 384 SIRRALHNGITADQIIAYMETHAHPQMRRLAGDNLEKKLELDPNCRDTLQVLPPTVVDQI 443
Query: 382 RLWESDLNRVEMTPAHYYDEF 402
+LW+ +L+R+ + + +F
Sbjct: 444 KLWQLELDRIISYDGYLFRDF 464
>sp|Q6FP41|TFB2_CANGA RNA polymerase II transcription factor B subunit 2 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=TFB2 PE=3 SV=1
Length = 504
Score = 180 bits (456), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 127/439 (28%), Positives = 215/439 (48%), Gaps = 67/439 (15%)
Query: 25 RLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQ 84
RLY++P C AI R LP LAK ++M + + D I + ++ WV +G + + AI +
Sbjct: 24 RLYKSPATCLAIYRLLPTLAKFFIMTVIFNDKDISLRDLDRWVKSNGKLQFQEAIKSMKS 83
Query: 85 LRLFSEEK-KKETTYRLNSTFQSNLRKHLIYGGALPREPMPSGITA---RLPTLEDL--- 137
L L + + LN TF+ + R L GG + GI RL T+ +L
Sbjct: 84 LHLLIPTRVNGQLLINLNPTFRESFRNALT-GGEVNNS---FGIVVDEDRLDTVVNLAVL 139
Query: 138 EAYAIGQWECFLLQLISSTQAERPTNFSSSMMKVFQRGLLSRR--DKEAPRLTESGFQFL 195
+ YA +WE L ++ + A+ P S +++ + + L D +T GFQFL
Sbjct: 140 DEYAATKWETILHFMVGTPMAKMP---SENVLNLLKHSKLMEEVPDSSEFMITNEGFQFL 196
Query: 196 LMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKD 255
L + N+Q+W ++ +Y+ ++ ++ +++F+ L G+AY+ LSE Q M+ D
Sbjct: 197 LQEVNSQIWSLLLQYLKLAESLHMDPVHVLNFIFMLGALETGKAYSTENLSETQLKMLLD 256
Query: 256 FADLGLVKLQQGRKENWFIPTKLATNLS----------------MSLTDSSAR------- 292
D GLV Q+ N F PT+LA L+ ++ D +A+
Sbjct: 257 MRDYGLV-FQKTSNPNIFYPTRLAQMLTSDTKSMRTASGAMESVLNKPDDAAKSTDDKYD 315
Query: 293 ---------KEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYN 343
++G +++ETNF++Y+Y S L IL LF ++ + N++ G IT+ES+
Sbjct: 316 SLEGKAEDIQDGALIIETNFKLYSYCNSPLQIAILSLFVHLKSRFANMVAGQITRESIRR 375
Query: 344 AFENGITAEQIISFLQQNAHPRV------------------ADRMPSVPENVCDQIRLWE 385
A NGITA+Q+I++L+ +AHP++ D + +P V DQI+LW+
Sbjct: 376 ALINGITADQVIAYLESHAHPQMRRLAEEKLQKKLELDPNCKDPLQVLPPTVVDQIKLWQ 435
Query: 386 SDLNRVEMTPAHYYDEFPS 404
+L+RV Y +F +
Sbjct: 436 LELDRVLTYEGSLYIDFDT 454
>sp|P42316|SCOB_BACSU Probable succinyl-CoA:3-ketoacid coenzyme A transferase subunit B
OS=Bacillus subtilis (strain 168) GN=scoB PE=1 SV=1
Length = 216
Score = 37.0 bits (84), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 218 GINQADLISFLLELSFHVAGEAY--NLNTLSEIQKSMIKDFADLGLVKL-QQGRKENWFI 274
G ADLI+ E V G +Y + + + I+ I D A LG +++ +QG NW I
Sbjct: 60 GTEDADLINAGKETITEVTGASYFDSAESFAMIRGGHI-DLAILGGMEVSEQGDLANWMI 118
Query: 275 PTKLATNL--SMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQL 328
P K+ + +M L + + R +V+ + + S K C + KV ++L
Sbjct: 119 PGKMVKGMGGAMDLVNGAKR---IVVIMEHVNKHGESKVKKTCSLPLTGQKVVHRL 171
>sp|Q60YJ7|PCID2_CAEBR PCI domain-containing protein 2 homolog OS=Caenorhabditis briggsae
GN=CBG18211 PE=3 SV=1
Length = 413
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 198 DTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFA 257
D + + + + EY S S+ +++ ++I ++ L HV + L Q + I+
Sbjct: 38 DHSKEAYLHISEYGSTSRRCRVSEDEIIDEIVCLHLHVLHSVHVAKDLISSQSTQIRIIQ 97
Query: 258 DLGLVKLQQGRKENWFIPT--KLATNL 282
LQ+ + ENWF+P +L T+L
Sbjct: 98 LFNKEILQKRKDENWFLPIFYRLCTDL 124
>sp|P16120|THRC_YEAST Threonine synthase OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=THR4 PE=1 SV=1
Length = 514
Score = 32.0 bits (71), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 162 TNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQ--LWYIVREYISNSQE 216
TN + + + + GL R DK A L+ + +L+ +N + LWY+ REY++N +
Sbjct: 302 TNENDILDRFLKSGLYERSDKVAATLSPA--MDILISSNFERLLWYLAREYLANGDD 356
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,786,984
Number of Sequences: 539616
Number of extensions: 5561138
Number of successful extensions: 13827
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 13776
Number of HSP's gapped (non-prelim): 30
length of query: 407
length of database: 191,569,459
effective HSP length: 120
effective length of query: 287
effective length of database: 126,815,539
effective search space: 36396059693
effective search space used: 36396059693
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)