Query 015409
Match_columns 407
No_of_seqs 130 out of 215
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 12:07:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015409.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015409hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dom_A RNA polymerase II trans 99.5 3.3E-16 1.1E-20 132.1 -0.3 44 363-406 18-61 (108)
2 3dgp_A RNA polymerase II trans 99.3 1.8E-13 6.2E-18 110.0 0.1 32 375-406 2-33 (80)
3 3jth_A Transcription activator 78.4 7.9 0.00027 30.1 7.6 80 32-113 12-92 (98)
4 3pqk_A Biofilm growth-associat 78.2 6.6 0.00022 30.9 7.1 80 32-113 12-92 (102)
5 3f6o_A Probable transcriptiona 75.6 9.1 0.00031 31.1 7.4 81 31-113 6-87 (118)
6 3cuo_A Uncharacterized HTH-typ 73.0 22 0.00074 27.1 8.8 82 31-113 12-94 (99)
7 1r1u_A CZRA, repressor protein 67.8 18 0.00061 28.6 7.4 80 32-113 15-95 (106)
8 2kko_A Possible transcriptiona 62.8 15 0.00053 29.3 6.1 79 33-113 15-94 (108)
9 2oqg_A Possible transcriptiona 60.1 35 0.0012 26.7 7.8 80 31-112 9-89 (114)
10 3f6v_A Possible transcriptiona 56.3 29 0.00098 29.8 7.1 79 33-113 48-127 (151)
11 1b0n_B Protein (SINI protein); 52.0 11 0.00038 27.9 3.1 23 341-363 19-41 (57)
12 2jsc_A Transcriptional regulat 51.6 35 0.0012 27.6 6.5 77 35-113 13-90 (118)
13 1u2w_A CADC repressor, cadmium 47.0 36 0.0012 27.7 6.0 81 32-113 31-112 (122)
14 1y0u_A Arsenical resistance op 46.0 35 0.0012 26.3 5.4 64 34-103 22-85 (96)
15 2hzt_A Putative HTH-type trans 43.5 55 0.0019 25.9 6.4 67 36-103 7-77 (107)
16 3df8_A Possible HXLR family tr 42.5 19 0.00066 29.0 3.5 71 34-105 18-90 (111)
17 2zkz_A Transcriptional repress 42.4 44 0.0015 26.1 5.5 82 30-113 14-96 (99)
18 1r1t_A Transcriptional repress 42.2 1E+02 0.0035 25.1 8.0 79 32-112 35-114 (122)
19 2fsw_A PG_0823 protein; alpha- 35.8 69 0.0024 25.2 5.8 69 34-103 16-88 (107)
20 2lkp_A Transcriptional regulat 34.9 1.1E+02 0.0039 24.0 7.1 78 33-112 22-101 (119)
21 1ub9_A Hypothetical protein PH 30.3 1E+02 0.0035 23.1 5.8 72 39-111 12-87 (100)
22 2v79_A DNA replication protein 29.7 61 0.0021 27.4 4.7 69 214-282 25-106 (135)
23 1p6r_A Penicillinase repressor 29.4 38 0.0013 25.3 3.0 48 44-91 10-60 (82)
24 3s4e_A Dual specificity protei 28.9 30 0.001 28.6 2.6 56 329-390 83-144 (144)
25 3mhs_B Protein SUS1; multi-pro 28.0 31 0.0011 28.0 2.4 37 337-382 46-82 (96)
26 2hl7_A Cytochrome C-type bioge 27.7 41 0.0014 26.7 3.0 24 338-361 49-72 (84)
27 1yyv_A Putative transcriptiona 26.8 1.2E+02 0.004 25.2 5.9 72 34-106 26-101 (131)
28 2kw0_A CCMH protein; oxidoredu 25.6 52 0.0018 26.5 3.3 24 338-361 46-69 (90)
29 3lab_A Putative KDPG (2-keto-3 24.3 91 0.0031 28.8 5.1 89 294-396 37-141 (217)
30 2fxa_A Protease production reg 23.4 71 0.0024 28.3 4.2 76 189-266 15-96 (207)
31 2k4b_A Transcriptional regulat 22.3 51 0.0017 26.4 2.7 52 40-92 33-87 (99)
32 4dhx_B Enhancer of yellow 2 tr 21.7 50 0.0017 27.0 2.5 28 348-382 61-88 (101)
33 2z99_A Putative uncharacterize 20.2 1E+02 0.0035 28.5 4.6 63 42-108 97-165 (219)
34 1zzw_A Dual specificity protei 20.1 1.8E+02 0.0063 23.6 5.9 47 336-388 94-144 (149)
No 1
>3dom_A RNA polymerase II transcription factor B subunit; protein-protein complex, heterodimer, beta-alpha-beta split, strand addition; 2.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=3.3e-16 Score=132.07 Aligned_cols=44 Identities=32% Similarity=0.659 Sum_probs=28.8
Q ss_pred ccccccCCCCCChhHHHHHHHHHHhcCceeeeCeeeecCCCCCC
Q 015409 363 HPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRV 406 (407)
Q Consensus 363 Hp~m~~~~p~lP~tV~dQIrLWe~Er~R~~~~~g~Ly~~F~s~~ 406 (407)
.|+++...|+|||||+|||||||.|||||++++||||++|+|++
T Consensus 18 ~~~~~~~~p~lPpTVvDQIrLWE~ErnRl~~~~G~LY~dF~s~~ 61 (108)
T 3dom_A 18 DPNCKEPLQVLPPTVVDQIRLWQLELDRVITYEGSLYSDFETSQ 61 (108)
T ss_dssp --------------CCCHHHHHHHHHTTCEEEEEEEEECCSCHH
T ss_pred CcccccCCCCCCCcHHHHHHHHHHhhCceeccceEEEecCCCHH
Confidence 35556678999999999999999999999999999999999853
No 2
>3dgp_A RNA polymerase II transcription factor B subunit; protein-protein complex, beta-alpha-beta spilt, heterodimer, damage, DNA excision; 1.80A {Saccharomyces cerevisiae}
Probab=99.31 E-value=1.8e-13 Score=109.96 Aligned_cols=32 Identities=38% Similarity=0.690 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHhcCceeeeCeeeecCCCCCC
Q 015409 375 ENVCDQIRLWESDLNRVEMTPAHYYDEFPSRV 406 (407)
Q Consensus 375 ~tV~dQIrLWe~Er~R~~~~~g~Ly~~F~s~~ 406 (407)
|||+|||||||.|||||++++||||++|+|++
T Consensus 2 pTV~DQIrLWe~ErnRl~~~~g~Ly~~F~s~~ 33 (80)
T 3dgp_A 2 PTVVDQIRLWQLELDRVITYEGSLYSDFETSQ 33 (80)
T ss_dssp ------------CGGGCEEEEEEEEECCSCHH
T ss_pred CchHHHHHHHHHhhCceeccceEEEecCCCHH
Confidence 79999999999999999999999999999863
No 3
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=78.37 E-value=7.9 Score=30.10 Aligned_cols=80 Identities=13% Similarity=0.074 Sum_probs=62.1
Q ss_pred hHHHHHhcCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhccceeeecC-CCceeEEeCHHHHHHHHH
Q 015409 32 ICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEEK-KKETTYRLNSTFQSNLRK 110 (407)
Q Consensus 32 tclaifR~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~~-~~~~~~~Ln~~F~~~lr~ 110 (407)
....+|+.|.+-.+.-|+.+|.. ++++.+++..-+ .-++......++.|.+..++...+ +....|.+++..-+.+..
T Consensus 12 ~~~~~~~~l~~~~r~~Il~~L~~-~~~~~~ela~~l-~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~l~~ 89 (98)
T 3jth_A 12 KAVVLLKAMANERRLQILCMLHN-QELSVGELCAKL-QLSQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEEVKAMIK 89 (98)
T ss_dssp HHHHHHHHHCSHHHHHHHHHTTT-SCEEHHHHHHHH-TCCHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhc-CCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHHHHHHHHH
Confidence 45677888888888889998875 899999998866 355667788899999999998643 334679999987777666
Q ss_pred HHH
Q 015409 111 HLI 113 (407)
Q Consensus 111 aL~ 113 (407)
.+.
T Consensus 90 ~l~ 92 (98)
T 3jth_A 90 LLH 92 (98)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 4
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=78.23 E-value=6.6 Score=30.89 Aligned_cols=80 Identities=15% Similarity=0.214 Sum_probs=60.4
Q ss_pred hHHHHHhcCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhccceeeecC-CCceeEEeCHHHHHHHHH
Q 015409 32 ICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEEK-KKETTYRLNSTFQSNLRK 110 (407)
Q Consensus 32 tclaifR~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~~-~~~~~~~Ln~~F~~~lr~ 110 (407)
....+|+.|.+-.+.-|+++|. ++|.+..++..-+ .-++......++.|.+..++...+ +....|.|++..-..+..
T Consensus 12 ~~~~~~~~l~~~~r~~Il~~L~-~~~~~~~ela~~l-~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~~~~ 89 (102)
T 3pqk_A 12 EVANLLKTLSHPVRLMLVCTLV-EGEFSVGELEQQI-GIGQPTLSQQLGVLRESGIVETRRNIKQIFYRLTEAKAAQLVN 89 (102)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHH-TCCBCHHHHHHHH-TCCTTHHHHHHHHHHHTTSEEEECSSSCCEEEECSSTHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH-hCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECcHHHHHHHH
Confidence 3456788888888888999984 6889999998766 455667788899999999998643 345689999976666655
Q ss_pred HHH
Q 015409 111 HLI 113 (407)
Q Consensus 111 aL~ 113 (407)
++.
T Consensus 90 ~l~ 92 (102)
T 3pqk_A 90 ALY 92 (102)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 5
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=75.56 E-value=9.1 Score=31.13 Aligned_cols=81 Identities=11% Similarity=0.075 Sum_probs=62.4
Q ss_pred hhHHHHHhcCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhccceeeecC-CCceeEEeCHHHHHHHH
Q 015409 31 FICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEEK-KKETTYRLNSTFQSNLR 109 (407)
Q Consensus 31 ~tclaifR~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~~-~~~~~~~Ln~~F~~~lr 109 (407)
.....+|+.|.+-.+.-|+.+|. ++|++.+++..-+ .-++......++.|.+..++...+ +....|.|++.-.+.+.
T Consensus 6 ~~~~~~~~al~~~~R~~Il~~L~-~~~~~~~eLa~~l-~is~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~ 83 (118)
T 3f6o_A 6 EQLNGIFQALADPTRRAVLGRLS-RGPATVSELAKPF-DMALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEPFTAVE 83 (118)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHH-TCCEEHHHHHTTC-CSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH-hCCCCHHHHHHHh-CcCHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHHHHHHH
Confidence 34567889888888888999987 7899999998755 355667788899999999997633 44568999998776665
Q ss_pred HHHH
Q 015409 110 KHLI 113 (407)
Q Consensus 110 ~aL~ 113 (407)
..+.
T Consensus 84 ~~~~ 87 (118)
T 3f6o_A 84 AWLA 87 (118)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 6
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=72.99 E-value=22 Score=27.07 Aligned_cols=82 Identities=10% Similarity=0.100 Sum_probs=60.4
Q ss_pred hhHHHHHhcCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhccceeeecC-CCceeEEeCHHHHHHHH
Q 015409 31 FICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEEK-KKETTYRLNSTFQSNLR 109 (407)
Q Consensus 31 ~tclaifR~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~~-~~~~~~~Ln~~F~~~lr 109 (407)
.....+|+.|..-.+.-|+..|...++++.+++..=.. -++......++.|.+..++...+ +....|.+++.-.+.+.
T Consensus 12 ~~~~~~~~~l~~~~~~~il~~l~~~~~~s~~ela~~l~-is~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~~~~l~ 90 (99)
T 3cuo_A 12 EQAAALLKAMSHPKRLLILCMLSGSPGTSAGELTRITG-LSASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVNAII 90 (99)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHTTCCSEEHHHHHHHHC-CCHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHHHHHHH
T ss_pred HHHHHHHHHhCChHHHHHHHHHHhCCCcCHHHHHHHHC-cCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHH
Confidence 34456777777777888889998777899998877443 35666788899999999997632 34467899998777666
Q ss_pred HHHH
Q 015409 110 KHLI 113 (407)
Q Consensus 110 ~aL~ 113 (407)
..+.
T Consensus 91 ~~l~ 94 (99)
T 3cuo_A 91 ATLK 94 (99)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5553
No 7
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=67.82 E-value=18 Score=28.64 Aligned_cols=80 Identities=11% Similarity=0.169 Sum_probs=58.8
Q ss_pred hHHHHHhcCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhccceeeecC-CCceeEEeCHHHHHHHHH
Q 015409 32 ICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEEK-KKETTYRLNSTFQSNLRK 110 (407)
Q Consensus 32 tclaifR~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~~-~~~~~~~Ln~~F~~~lr~ 110 (407)
....+|+.|..-.+.-|+.+|. +++.+.+++..-.. -++......++.|.+..++...+ +....|.+++..-..+-.
T Consensus 15 ~~~~~~~~l~~~~r~~IL~~L~-~~~~~~~ela~~l~-is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~~~~~ 92 (106)
T 1r1u_A 15 RVTEIFKALGDYNRIRIMELLS-VSEASVGHISHQLN-LSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLK 92 (106)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHH-HCCBCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH-hCCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHH
Confidence 3456888888888888888887 78889999987653 45666788899999999997632 344678899876555544
Q ss_pred HHH
Q 015409 111 HLI 113 (407)
Q Consensus 111 aL~ 113 (407)
.+.
T Consensus 93 ~l~ 95 (106)
T 1r1u_A 93 QAI 95 (106)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 8
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=62.76 E-value=15 Score=29.33 Aligned_cols=79 Identities=10% Similarity=0.103 Sum_probs=57.3
Q ss_pred HHHHHhcCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhccceeeecC-CCceeEEeCHHHHHHHHHH
Q 015409 33 CEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEEK-KKETTYRLNSTFQSNLRKH 111 (407)
Q Consensus 33 claifR~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~~-~~~~~~~Ln~~F~~~lr~a 111 (407)
...+|+.|..-.+.-|+.+|. +++++.+++..-+. -++......++.|.+..++...+ +....|.+++.-...+..+
T Consensus 15 ~~~~~~al~~~~r~~IL~~L~-~~~~s~~eLa~~lg-is~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~ 92 (108)
T 2kko_A 15 VARVGKALANGRRLQILDLLA-QGERAVEAIATATG-MNLTTASANLQALKSGGLVEARREGTRQYYRIAGEDVARLFAL 92 (108)
T ss_dssp HHHHHHHHTTSTTHHHHHHHT-TCCEEHHHHHHHHT-CCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH-cCCcCHHHHHHHHC-cCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHH
Confidence 446777666666666777776 58888899887653 45666788899999999997632 3346789998877766666
Q ss_pred HH
Q 015409 112 LI 113 (407)
Q Consensus 112 L~ 113 (407)
|.
T Consensus 93 l~ 94 (108)
T 2kko_A 93 VQ 94 (108)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 9
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=60.13 E-value=35 Score=26.68 Aligned_cols=80 Identities=11% Similarity=0.055 Sum_probs=58.3
Q ss_pred hhHHHHHhcCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhccceeeecC-CCceeEEeCHHHHHHHH
Q 015409 31 FICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEEK-KKETTYRLNSTFQSNLR 109 (407)
Q Consensus 31 ~tclaifR~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~~-~~~~~~~Ln~~F~~~lr 109 (407)
.....+|+.|..-.+.-|+..| .++|++.+++..-.. -++......++.|.+..++...+ +....|.|++.-.+.+.
T Consensus 9 ~~~~~~~~~l~~~~r~~IL~~L-~~~~~~~~ela~~l~-is~~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~~~~~ 86 (114)
T 2oqg_A 9 AELASVFAALSDETRWEILTEL-GRADQSASSLATRLP-VSRQAIAKHLNALQACGLVESVKVGREIRYRALGAELNKTA 86 (114)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-HHSCBCHHHHHHHSS-SCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHH
T ss_pred HHHHHHHHHhCChHHHHHHHHH-HcCCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCCeeEEecCCEEEEEechHHHHHHH
Confidence 3455778888877788888888 678899999988653 45666788899999999997532 33457889987655444
Q ss_pred HHH
Q 015409 110 KHL 112 (407)
Q Consensus 110 ~aL 112 (407)
..+
T Consensus 87 ~~~ 89 (114)
T 2oqg_A 87 RTL 89 (114)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 10
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=56.35 E-value=29 Score=29.83 Aligned_cols=79 Identities=14% Similarity=0.137 Sum_probs=61.5
Q ss_pred HHHHHhcCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhccceeeecC-CCceeEEeCHHHHHHHHHH
Q 015409 33 CEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEEK-KKETTYRLNSTFQSNLRKH 111 (407)
Q Consensus 33 claifR~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~~-~~~~~~~Ln~~F~~~lr~a 111 (407)
+..+|+.|..-.+.-|+++|. ++|.+..++..-+. -++......++.|.+..++...+ +....|.|++.-.+.+...
T Consensus 48 ~~~~l~aL~~p~R~~IL~~L~-~~~~t~~eLa~~lg-ls~stvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~~~~l~~~ 125 (151)
T 3f6v_A 48 VLDQLEVAAEPTRRRLVQLLT-SGEQTVNNLAAHFP-ASRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGLAQLRAL 125 (151)
T ss_dssp CCCHHHHHTSHHHHHHHHHGG-GCCEEHHHHHTTSS-SCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH-hCCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHHH
Confidence 346888888888888999997 78999999987654 45677888899999999998633 3446899999877766655
Q ss_pred HH
Q 015409 112 LI 113 (407)
Q Consensus 112 L~ 113 (407)
+.
T Consensus 126 l~ 127 (151)
T 3f6v_A 126 FD 127 (151)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 11
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=51.97 E-value=11 Score=27.92 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=19.8
Q ss_pred HHHHHHcCCCHHHHHHHHhhcCc
Q 015409 341 LYNAFENGITAEQIISFLQQNAH 363 (407)
Q Consensus 341 vr~Al~~GITA~QII~fL~~hAH 363 (407)
|++|-+.|+|-++|..||..+-.
T Consensus 19 I~~Ak~lGlsleEIrefL~l~~~ 41 (57)
T 1b0n_B 19 MVEAKEANISPEEIRKYLLLNKK 41 (57)
T ss_dssp HHHHHHTTCCHHHHHHHHHHC--
T ss_pred HHHHHHcCCCHHHHHHHHHHhcc
Confidence 67999999999999999998754
No 12
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=51.55 E-value=35 Score=27.63 Aligned_cols=77 Identities=12% Similarity=0.098 Sum_probs=53.5
Q ss_pred HHHhcCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhccceeeecC-CCceeEEeCHHHHHHHHHHHH
Q 015409 35 AILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEEK-KKETTYRLNSTFQSNLRKHLI 113 (407)
Q Consensus 35 aifR~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~~-~~~~~~~Ln~~F~~~lr~aL~ 113 (407)
.+|+.|..-.+.-|+++|. +++.+..++..-.. -++......++.|.+..++...+ +....|.|++.--..+...+.
T Consensus 13 ~~~~aL~~~~r~~IL~~L~-~~~~~~~eLa~~lg-is~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~~~~~~l~ 90 (118)
T 2jsc_A 13 RLGRALADPTRCRILVALL-DGVCYPGQLAAHLG-LTRSNVSNHLSCLRGCGLVVATYEGRQVRYALADSHLARALGELV 90 (118)
T ss_dssp THHHHHSSHHHHHHHHHHH-TTCCSTTTHHHHHS-SCHHHHHHHHHHHTTTTSEEEEECSSSEEEEESSHHHHHHHHHCC
T ss_pred HHHHHhCCHHHHHHHHHHH-cCCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCceEEEEECCEEEEEEChHHHHHHHHHHH
Confidence 3566555555666777776 67788888877553 45677788899999999997633 334679999875555555444
No 13
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=47.02 E-value=36 Score=27.67 Aligned_cols=81 Identities=10% Similarity=0.057 Sum_probs=58.0
Q ss_pred hHHHHHhcCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhccceeeecC-CCceeEEeCHHHHHHHHH
Q 015409 32 ICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEEK-KKETTYRLNSTFQSNLRK 110 (407)
Q Consensus 32 tclaifR~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~~-~~~~~~~Ln~~F~~~lr~ 110 (407)
....+|+.|.+-.+.-|+.+|..+++.+.+++..-.. -++......++.|.+..++...+ +....|.+++.--..+-.
T Consensus 31 ~~~~~~~al~~~~rl~IL~~L~~~~~~s~~eLa~~l~-is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~~~~~ 109 (122)
T 1u2w_A 31 GVSQILKAIADENRAKITYALCQDEELCVCDIANILG-VTIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEHIRQIMM 109 (122)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHSSCEEHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEEC----CCEEEESCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHCCCcCHHHHHHHHC-cCHHHHHHHHHHHHHCCCeEEEEECCEEEEEECHHHHHHHHH
Confidence 4567788887777878888887678899999987553 45667788899999999997643 334578999875555544
Q ss_pred HHH
Q 015409 111 HLI 113 (407)
Q Consensus 111 aL~ 113 (407)
.+.
T Consensus 110 ~l~ 112 (122)
T 1u2w_A 110 IAL 112 (122)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 14
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=45.97 E-value=35 Score=26.31 Aligned_cols=64 Identities=5% Similarity=0.010 Sum_probs=49.5
Q ss_pred HHHHhcCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhccceeeecCCCceeEEeCHH
Q 015409 34 EAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEEKKKETTYRLNST 103 (407)
Q Consensus 34 laifR~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~~~~~~~~~Ln~~ 103 (407)
..+|+.|..-.+.-|+.+| +++++..++..-+. -++......++.|.+..++...+ | .|.|++.
T Consensus 22 ~~~~~~l~~~~r~~Il~~L--~~~~~~~eLa~~l~-is~~tv~~~L~~L~~~Glv~~~~-g--~y~l~~~ 85 (96)
T 1y0u_A 22 KRYNYAVTNPVRRKILRML--DKGRSEEEIMQTLS-LSKKQLDYHLKVLEAGFCIERVG-E--RWVVTDA 85 (96)
T ss_dssp HHHHHHHSCHHHHHHHHHH--HTTCCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEEET-T--EEEECTT
T ss_pred HHHHHHhCCHHHHHHHHHH--cCCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCCEEEEC-C--EEEECCC
Confidence 3577777777777788888 78899999987653 45666788899999999997654 4 7888875
No 15
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=43.51 E-value=55 Score=25.85 Aligned_cols=67 Identities=9% Similarity=0.042 Sum_probs=49.7
Q ss_pred HHhcCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhccceeeec--C--CCceeEEeCHH
Q 015409 36 ILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEE--K--KKETTYRLNST 103 (407)
Q Consensus 36 ifR~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~--~--~~~~~~~Ln~~ 103 (407)
+|..+++--+-.|+..|. +++.+.+++..-+..-++......+++|.+..++... + .....|.|++.
T Consensus 7 ~l~~l~~~~~~~IL~~L~-~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~ 77 (107)
T 2hzt_A 7 TLEVIGGKWKXVILXHLT-HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEY 77 (107)
T ss_dssp HHHHHCSTTHHHHHHHHT-TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTT
T ss_pred HHHHHcCccHHHHHHHHH-hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECcc
Confidence 455555555666788887 7899999999877566778889999999999999852 1 22356888874
No 16
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=42.50 E-value=19 Score=29.03 Aligned_cols=71 Identities=17% Similarity=0.129 Sum_probs=52.1
Q ss_pred HHHHhcCChhHHHHHHHHhcCCCCCC--hHHHHhhcCCcchhHHHHHHHHHhccceeeecCCCceeEEeCHHHH
Q 015409 34 EAILRSLPPLAKKYVMQMFYIDGAIP--AKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEEKKKETTYRLNSTFQ 105 (407)
Q Consensus 34 laifR~Lp~lak~~vmrlL~~~~~v~--~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~~~~~~~~~Ln~~F~ 105 (407)
..+|..|..--+-.|++.|. +++.. .+++..-+..-+.......++.|.+-.++.........|.|++.=+
T Consensus 18 ~~~l~~l~~~wrl~IL~~L~-~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~r~~~y~LT~~G~ 90 (111)
T 3df8_A 18 ESVLHLLGKKYTMLIISVLG-NGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSGQITTYALTEKGM 90 (111)
T ss_dssp SSTHHHHHSTTHHHHHHHHT-SSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHHH
T ss_pred HHHHHHHcCccHHHHHHHHh-cCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeecCcEEEEECccHH
Confidence 34445555555777888887 77877 8999887755677788999999999999986322446899998643
No 17
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=42.44 E-value=44 Score=26.12 Aligned_cols=82 Identities=10% Similarity=0.067 Sum_probs=58.3
Q ss_pred chhHHHHHhcCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhccceeeec-CCCceeEEeCHHHHHHH
Q 015409 30 PFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEE-KKKETTYRLNSTFQSNL 108 (407)
Q Consensus 30 p~tclaifR~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~-~~~~~~~~Ln~~F~~~l 108 (407)
......+|+.|.+-.+.-|++.|..+++.+.+++..-.. -++......++.|++- ++... .+....|.+++.-.+.+
T Consensus 14 ~~~~~~~~~aL~~~~Rl~IL~~l~~~~~~~~~ela~~l~-is~stvs~hL~~L~~~-lv~~~~~gr~~~y~l~~~~~~~~ 91 (99)
T 2zkz_A 14 LEDDAELLKTMAHPMRLKIVNELYKHKALNVTQIIQILK-LPQSTVSQHLCKMRGK-VLKRNRQGLEIYYSINNPKVEGI 91 (99)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHHSCEEHHHHHHHHT-CCHHHHHHHHHHHBTT-TBEEEEETTEEEEECCCHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHCCCcCHHHHHHHHC-cCHHHHHHHHHHHHHH-hhhheEeCcEEEEEEChHHHHHH
Confidence 345667888777777777776666678888888876543 3456677889999998 87653 24456899998877766
Q ss_pred HHHHH
Q 015409 109 RKHLI 113 (407)
Q Consensus 109 r~aL~ 113 (407)
...+.
T Consensus 92 ~~~l~ 96 (99)
T 2zkz_A 92 IKLLN 96 (99)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 66553
No 18
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=42.25 E-value=1e+02 Score=25.08 Aligned_cols=79 Identities=13% Similarity=0.114 Sum_probs=56.8
Q ss_pred hHHHHHhcCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhccceeeecC-CCceeEEeCHHHHHHHHH
Q 015409 32 ICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEEK-KKETTYRLNSTFQSNLRK 110 (407)
Q Consensus 32 tclaifR~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~~-~~~~~~~Ln~~F~~~lr~ 110 (407)
....+|+.|....+.-|+.+|. +++.+.+++..-.. -++......++.|.+..++...+ +....|.+++.--..+-.
T Consensus 35 ~~~~~~kaL~~~~rl~IL~~L~-~~~~s~~ela~~lg-is~stvs~~L~~Le~~Glv~~~~~gr~~~y~l~~~~l~~~~~ 112 (122)
T 1r1t_A 35 SLAEFFAVLADPNRLRLLSLLA-RSELCVGDLAQAIG-VSESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDHHIVALYQ 112 (122)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHT-TCCBCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH-cCCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHH
Confidence 3467788777777777888886 57888899887663 45667788899999999987633 334578888875444444
Q ss_pred HH
Q 015409 111 HL 112 (407)
Q Consensus 111 aL 112 (407)
.+
T Consensus 113 ~l 114 (122)
T 1r1t_A 113 NA 114 (122)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 19
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=35.81 E-value=69 Score=25.19 Aligned_cols=69 Identities=7% Similarity=-0.034 Sum_probs=51.7
Q ss_pred HHHHhcCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhccceeeec--C--CCceeEEeCHH
Q 015409 34 EAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEE--K--KKETTYRLNST 103 (407)
Q Consensus 34 laifR~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~--~--~~~~~~~Ln~~ 103 (407)
...|..+.+--+..|+..|. +++...+++..-+..-++......+++|.+..++... + .....|.|++.
T Consensus 16 ~~~l~~l~~~~~~~IL~~L~-~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~ 88 (107)
T 2fsw_A 16 RKSMQIFAGKWTLLIIFQIN-RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPL 88 (107)
T ss_dssp HHHHHHHTSSSHHHHHHHHT-TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHH
T ss_pred HHHHHHHcCccHHHHHHHHH-hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECcc
Confidence 45566666666667888887 7899999999876546677889999999999999752 1 22357889985
No 20
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=34.86 E-value=1.1e+02 Score=24.01 Aligned_cols=78 Identities=14% Similarity=0.215 Sum_probs=54.6
Q ss_pred HHHHHhcCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhccceeeecC-CCceeEEeC-HHHHHHHHH
Q 015409 33 CEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEEK-KKETTYRLN-STFQSNLRK 110 (407)
Q Consensus 33 claifR~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~~-~~~~~~~Ln-~~F~~~lr~ 110 (407)
...+|+.|....+.-|+..|.- ++.+.+++..-.. -++......++.|.+..++...+ +....|.++ ..+.+-++.
T Consensus 22 ~~~~~~~l~~~~~~~il~~L~~-~~~s~~ela~~l~-is~stvsr~l~~Le~~Glv~~~~~~r~~~~~~~~~~~~~~~~~ 99 (119)
T 2lkp_A 22 VASTLQALATPSRLMILTQLRN-GPLPVTDLAEAIG-MEQSAVSHQLRVLRNLGLVVGDRAGRSIVYSLYDTHVAQLLDE 99 (119)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHH-CCCCHHHHHHHHS-SCHHHHHHHHHHHHHHCSEEEEEETTEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH-CCCCHHHHHHHHC-cCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEchHHHHHHHHH
Confidence 3557777777777778888875 6788888877553 45667788899999999887532 334578888 666655554
Q ss_pred HH
Q 015409 111 HL 112 (407)
Q Consensus 111 aL 112 (407)
++
T Consensus 100 ~~ 101 (119)
T 2lkp_A 100 AI 101 (119)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 21
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=30.32 E-value=1e+02 Score=23.07 Aligned_cols=72 Identities=10% Similarity=-0.007 Sum_probs=49.7
Q ss_pred cCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhccceeeec----CCCceeEEeCHHHHHHHHHH
Q 015409 39 SLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEE----KKKETTYRLNSTFQSNLRKH 111 (407)
Q Consensus 39 ~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~----~~~~~~~~Ln~~F~~~lr~a 111 (407)
.|.+-.+.-|+..|..+++++.+++..-+. -++......+++|.+-.++... .+....|.|++.-++-+...
T Consensus 12 ~l~~~~~~~iL~~L~~~~~~~~~ela~~l~-is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~~~~~ 87 (100)
T 1ub9_A 12 ILGNPVRLGIMIFLLPRRKAPFSQIQKVLD-LTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRF 87 (100)
T ss_dssp HHHSHHHHHHHHHHHHHSEEEHHHHHHHTT-CCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHhcCCcCHHHHHHHHC-cCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHHHHHH
Confidence 344445666777777677888888888653 4556678889999999999742 22345788998876555443
No 22
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=29.68 E-value=61 Score=27.39 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=44.0
Q ss_pred HHHcCCChHHHHHHHHhhcccccCccccCC-------CCCHHH-HHHHHHHhhcCceeeecC-----CCccccccchhhh
Q 015409 214 SQERGINQADLISFLLELSFHVAGEAYNLN-------TLSEIQ-KSMIKDFADLGLVKLQQG-----RKENWFIPTKLAT 280 (407)
Q Consensus 214 ~e~~~~~~~~~l~fLf~Ls~~~~G~~Y~~~-------~lt~~q-~~~L~~L~d~GLvy~~~~-----~~~~~f~pT~La~ 280 (407)
..+.|++..|++-.++-..+.+-|..+++- ++++.+ .++|+.|.+-|+|..... +....|..++|--
T Consensus 25 y~~LgLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL~pL~e 104 (135)
T 2v79_A 25 YKQLGLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQPLWG 104 (135)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEECHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeHHHHHH
Confidence 344588888876555555556666655443 345544 688999999999976311 1124677888775
Q ss_pred hh
Q 015409 281 NL 282 (407)
Q Consensus 281 ~L 282 (407)
.|
T Consensus 105 kL 106 (135)
T 2v79_A 105 KL 106 (135)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 23
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=29.35 E-value=38 Score=25.30 Aligned_cols=48 Identities=13% Similarity=0.133 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCCCCCChHHHHhhcCCc---chhHHHHHHHHHhccceeeec
Q 015409 44 AKKYVMQMFYIDGAIPAKMMEEWVLPD---GFTKHRVAIDRLVQLRLFSEE 91 (407)
Q Consensus 44 ak~~vmrlL~~~~~v~~~~l~~W~~~~---~~~~~~~al~~L~~L~I~~~~ 91 (407)
++..||..||..++++..++...+..+ +.......+++|.+-.++...
T Consensus 10 ~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~ 60 (82)
T 1p6r_A 10 AELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHH 60 (82)
T ss_dssp HHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEE
Confidence 456799999998999999998866432 466778899999999999763
No 24
>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine phosphatase, hydrolase; 1.26A {Homo sapiens}
Probab=28.88 E-value=30 Score=28.57 Aligned_cols=56 Identities=9% Similarity=0.207 Sum_probs=38.7
Q ss_pred CceEEEE--eCHHHHHH-H---HHcCCCHHHHHHHHhhcCccccccCCCCCChhHHHHHHHHHHhcCc
Q 015409 329 PNLIVGA--ITKESLYN-A---FENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNR 390 (407)
Q Consensus 329 Pnlvvg~--iTReSvr~-A---l~~GITA~QII~fL~~hAHp~m~~~~p~lP~tV~dQIrLWe~Er~R 390 (407)
+-+|-+. ++|...-- | ...|.+.++.++++++. +|.+ ...+....|++.||.+++|
T Consensus 83 ~VlVHC~~G~sRS~~~v~ayLm~~~~~~~~~A~~~v~~~-Rp~~-----~pn~~f~~qL~~~e~~~~~ 144 (144)
T 3s4e_A 83 VVLVHSNAGVSRAAAIVIGFLMNSEQTSFTSAFSLVKNA-RPSI-----CPNSGFMEQLRTYQEGKES 144 (144)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHH-STTC-----CCCHHHHHHHHHTTHHHHC
T ss_pred eEEEEcCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHH-CCCc-----CCCHHHHHHHHHHHHhccC
Confidence 4444444 78864433 2 25899999999999974 4432 2356789999999987653
No 25
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=28.00 E-value=31 Score=27.97 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=29.4
Q ss_pred CHHHHHHHHHcCCCHHHHHHHHhhcCccccccCCCCCChhHHHHHH
Q 015409 337 TKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIR 382 (407)
Q Consensus 337 TReSvr~Al~~GITA~QII~fL~~hAHp~m~~~~p~lP~tV~dQIr 382 (407)
.|+-+++. ..+|-+++++.+..+|+ ..||+.|...+.
T Consensus 46 ~r~~i~~~--~~vt~~~L~~~I~P~Ar-------~~VP~~VK~Ell 82 (96)
T 3mhs_B 46 TKSEMNIN--ESTNFTQILSTVEPKAL-------EMVSDSTRETVL 82 (96)
T ss_dssp HHHHHHHH--TCCCHHHHHHHHHHHHH-------HTSCHHHHHHHH
T ss_pred HHHHHHhc--CCCCHHHHHHHHhHHHH-------HHCCHHHHHHHH
Confidence 34455444 79999999999999998 689999977653
No 26
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=27.73 E-value=41 Score=26.69 Aligned_cols=24 Identities=13% Similarity=0.556 Sum_probs=22.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhc
Q 015409 338 KESLYNAFENGITAEQIISFLQQN 361 (407)
Q Consensus 338 ReSvr~Al~~GITA~QII~fL~~h 361 (407)
|.-|++-+..|=|-+||++|+...
T Consensus 49 R~~V~~~l~~G~sd~eI~~~~v~R 72 (84)
T 2hl7_A 49 RKQIYGQLQQGKSDGEIVDYMVAR 72 (84)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 778999999999999999999865
No 27
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=26.81 E-value=1.2e+02 Score=25.16 Aligned_cols=72 Identities=10% Similarity=0.033 Sum_probs=53.5
Q ss_pred HHHHhcCChhHHHHHHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhccceeeec--C--CCceeEEeCHHHHH
Q 015409 34 EAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEE--K--KKETTYRLNSTFQS 106 (407)
Q Consensus 34 laifR~Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~--~--~~~~~~~Ln~~F~~ 106 (407)
..+|..+..--+-.|+..|. +++...+++..-+..-++......++.|.+-.++... + .....|.|++.=++
T Consensus 26 ~~~l~~l~~~w~l~IL~~L~-~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~ 101 (131)
T 1yyv_A 26 REVLKHVTSRWGVLILVALR-DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQ 101 (131)
T ss_dssp HHHHHHHHSHHHHHHHHHGG-GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHH-cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHH
Confidence 45566666666667888887 7899999999877546777888999999999999752 1 22357899986433
No 28
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=25.61 E-value=52 Score=26.48 Aligned_cols=24 Identities=13% Similarity=0.565 Sum_probs=22.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhc
Q 015409 338 KESLYNAFENGITAEQIISFLQQN 361 (407)
Q Consensus 338 ReSvr~Al~~GITA~QII~fL~~h 361 (407)
|.-|++-+..|=|-+||++|+...
T Consensus 46 R~~Vre~l~~G~Sd~eI~~~mv~R 69 (90)
T 2kw0_A 46 RQKVYELMQEGKSKKEIVDYMVAR 69 (90)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 778999999999999999999875
No 29
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=24.26 E-value=91 Score=28.79 Aligned_cols=89 Identities=20% Similarity=0.327 Sum_probs=60.7
Q ss_pred cceEEEeeCceEEEecCCHhHHHHHHHHHhhhhcCCceEEEE---eCHHHHHHHHHcC-------CCHHHHHHHHhhcCc
Q 015409 294 EGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGA---ITKESLYNAFENG-------ITAEQIISFLQQNAH 363 (407)
Q Consensus 294 ~g~IIVETNFrvYAYT~S~lqiaiL~lF~~l~~r~Pnlvvg~---iTReSvr~Al~~G-------ITA~QII~fL~~hAH 363 (407)
.|.=++|-.|| +|-....+ ..+..++|+++||. +|.+.+++|.+.| -+-.++|.+-+.+--
T Consensus 37 gGi~~iEvt~~------t~~a~~~I---~~l~~~~p~~~IGAGTVlt~~~a~~ai~AGA~fivsP~~~~evi~~~~~~~v 107 (217)
T 3lab_A 37 GGVHLLEVTLR------TEAGLAAI---SAIKKAVPEAIVGAGTVCTADDFQKAIDAGAQFIVSPGLTPELIEKAKQVKL 107 (217)
T ss_dssp TTCCEEEEETT------STTHHHHH---HHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred cCCCEEEEeCC------CccHHHHH---HHHHHHCCCCeEeeccccCHHHHHHHHHcCCCEEEeCCCcHHHHHHHHHcCC
Confidence 36667888766 45444444 45567789999995 9999999999998 344678888777644
Q ss_pred ------cccccCCCCCChhHHHHHHHHHHhcCceeeeCe
Q 015409 364 ------PRVADRMPSVPENVCDQIRLWESDLNRVEMTPA 396 (407)
Q Consensus 364 ------p~m~~~~p~lP~tV~dQIrLWe~Er~R~~~~~g 396 (407)
|-| |++ -|..+=.+-|+.--+-+++.++
T Consensus 108 ~~~~~~~~~----PG~-~TptE~~~A~~~Gad~vK~FPa 141 (217)
T 3lab_A 108 DGQWQGVFL----PGV-ATASEVMIAAQAGITQLKCFPA 141 (217)
T ss_dssp HCSCCCEEE----EEE-CSHHHHHHHHHTTCCEEEETTT
T ss_pred CccCCCeEe----CCC-CCHHHHHHHHHcCCCEEEECcc
Confidence 433 222 3566666677777777777654
No 30
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=23.42 E-value=71 Score=28.32 Aligned_cols=76 Identities=9% Similarity=0.156 Sum_probs=48.4
Q ss_pred hhhhhhhccChhhHHHHHHHHHHH-HHHHcCCChHH--HHHHHHhhc---ccccCccccCCCCCHHHHHHHHHHhhcCce
Q 015409 189 ESGFQFLLMDTNAQLWYIVREYIS-NSQERGINQAD--LISFLLELS---FHVAGEAYNLNTLSEIQKSMIKDFADLGLV 262 (407)
Q Consensus 189 ~~GFqFLL~d~~~Q~W~lll~yl~-~~e~~~~~~~~--~l~fLf~Ls---~~~~G~~Y~~~~lt~~q~~~L~~L~d~GLv 262 (407)
..+|-|++.....++|..+..+++ .+...|++..+ +|.+|..-+ ..++.+...++ ..+-..++..|.+.|+|
T Consensus 15 ~~~l~~~l~~~~r~~~r~~~~~~~~~l~~~gLt~~q~~iL~~L~~~~~~t~~eLa~~l~i~--~stvs~~l~~Le~~GlV 92 (207)
T 2fxa_A 15 ALVFTQKMAQLSKALWKSIEKDWQQWLKPYDLNINEHHILWIAYQLNGASISEIAKFGVMH--VSTAFNFSKKLEERGYL 92 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCCHHHHHHHHHHHHHTSEEHHHHHHHTTCC--HHHHHHHHHHHHHHTSE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCcCHHHHHHHHCCC--HHHHHHHHHHHHHCCCE
Confidence 456678888888888888887775 34556888775 455554422 22222222222 14556789999999999
Q ss_pred eeec
Q 015409 263 KLQQ 266 (407)
Q Consensus 263 y~~~ 266 (407)
...+
T Consensus 93 ~r~~ 96 (207)
T 2fxa_A 93 RFSK 96 (207)
T ss_dssp EEEC
T ss_pred EEec
Confidence 6443
No 31
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=22.33 E-value=51 Score=26.42 Aligned_cols=52 Identities=19% Similarity=0.304 Sum_probs=41.4
Q ss_pred CChhHHHHHHHHhcCCCCCChHHHHhhcCCc---chhHHHHHHHHHhccceeeecC
Q 015409 40 LPPLAKKYVMQMFYIDGAIPAKMMEEWVLPD---GFTKHRVAIDRLVQLRLFSEEK 92 (407)
Q Consensus 40 Lp~lak~~vmrlL~~~~~v~~~~l~~W~~~~---~~~~~~~al~~L~~L~I~~~~~ 92 (407)
|++ ++..||+.||..++++.+++...+..+ +....-..|++|.+-.++...+
T Consensus 33 LT~-~e~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 33 VSN-AELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp CCC-SCSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred CCH-HHHHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe
Confidence 443 456799999998899999999887654 4677889999999999997643
No 32
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=21.65 E-value=50 Score=27.02 Aligned_cols=28 Identities=14% Similarity=0.379 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHhhcCccccccCCCCCChhHHHHHH
Q 015409 348 GITAEQIISFLQQNAHPRVADRMPSVPENVCDQIR 382 (407)
Q Consensus 348 GITA~QII~fL~~hAHp~m~~~~p~lP~tV~dQIr 382 (407)
.+|-+++++.+..+|+ ..||+.|...+.
T Consensus 61 ~vt~~~L~~~I~P~Ar-------~~VP~~VK~Ell 88 (101)
T 4dhx_B 61 HVTVDDLVAEITPKGR-------ALVPDSVKKELL 88 (101)
T ss_dssp TCCHHHHHHHHHHHHH-------HHSCHHHHHHHH
T ss_pred CCCHHHHHHHHhHHHH-------HHCCHHHHHHHH
Confidence 5999999999999998 689999977653
No 33
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=20.21 E-value=1e+02 Score=28.52 Aligned_cols=63 Identities=11% Similarity=0.118 Sum_probs=46.8
Q ss_pred hhHHHH--HHHHhcCCCCCChHHHHhhcCCcchhHHHHHHHHHhccceeeec----CCCceeEEeCHHHHHHH
Q 015409 42 PLAKKY--VMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEE----KKKETTYRLNSTFQSNL 108 (407)
Q Consensus 42 ~lak~~--vmrlL~~~~~v~~~~l~~W~~~~~~~~~~~al~~L~~L~I~~~~----~~~~~~~~Ln~~F~~~l 108 (407)
.+.+-- +++++...+||+.++++.----+. ...++.|..-+++.+. ..|+..|..++.|..-|
T Consensus 97 ~Ls~aaLEtLaiIAy~QPITR~eI~~irGv~~----~~~v~~Lle~gLI~e~Gr~~~~Gp~ly~tT~~Fl~~f 165 (219)
T 2z99_A 97 KLTRAALETLAVVAYRQPVTRARVSAVRGVNV----DAVMRTLLARGLITEVGTDADTGAVTFATTELFLERL 165 (219)
T ss_dssp CCCHHHHHHHHHHHHHCSEEHHHHHHHHTSCC----HHHHHHHHHTTSEEEEEECTTTCCEEEEECHHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCcCHHHHHHHHCCCH----HHHHHHHHHCCCEEEccccCCCCCeEEEECHHHHHHh
Confidence 455555 888888899999999988544333 5789999999999751 12467899999996643
No 34
>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A {Homo sapiens}
Probab=20.14 E-value=1.8e+02 Score=23.65 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=34.4
Q ss_pred eCHHHHHHH----HHcCCCHHHHHHHHhhcCccccccCCCCCChhHHHHHHHHHHhc
Q 015409 336 ITKESLYNA----FENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDL 388 (407)
Q Consensus 336 iTReSvr~A----l~~GITA~QII~fL~~hAHp~m~~~~p~lP~tV~dQIrLWe~Er 388 (407)
++|...--| ...|.+.++++.++++. +|.+ ..-+...+|++.||.+.
T Consensus 94 ~~RSg~~~~ayl~~~~~~~~~~a~~~v~~~-R~~~-----~pn~~f~~qL~~~e~~l 144 (149)
T 1zzw_A 94 VSRSATIVIAYLMKHTRMTMTDAYKFVKGK-RPII-----SPNLNFMGQLLEFEEDL 144 (149)
T ss_dssp SSHHHHHHHHHHHHHSCCCHHHHHHHHHHH-CTTC-----CCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHH-CCcc-----CCCHHHHHHHHHHHHHH
Confidence 689886533 24799999999999876 3322 12356899999999864
Done!