Citrus Sinensis ID: 015409

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------
MPLVKIIAKNFMDMVASLTARDLDRLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLRKHLIYGGALPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRVI
ccHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHccHHHHHHHHHHHcccccccHHHHHHHcccccHHHHHHHHHHHHccccccccccccccEEEcHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccccccccccccccccHHccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccEEEEccccccCECccHHHHHHHccccccccccccEEEEEEccEEEEccccHHHHHHHHHHHHHHccccccEEEEEcHHHHHHHHHccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHcccEEEcccEEEcccccccc
***VKIIAKNFMDMVASLTARDLDRLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLRKHLIYGGALPRE*MPSGI*ARLPTLEDLEAYAIGQWECFLLQLIS***************KV*****************ESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVAD***SVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRV*
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MPLVKIIAKNFMDMVASLTARDLDRLYENPFICEAILRSLPPLAKKYVMQMFYIDGAIPAKMMEEWVLPDGFTKHRVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLRKHLIYGGALPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKLATNLSMSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRVI

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
RNA polymerase II transcription factor B subunit 2 Component of the core-TFIIH basal transcription factor involved in nucleotide excision repair (NER) of DNA.probableQ6BZX4
General transcription factor IIH subunit 4 Component of the core-TFIIH basal transcription factor involved in nucleotide excision repair (NER) of DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II.probableP60027
RNA polymerase II transcription factor B subunit 2 Component of the core-TFIIH basal transcription factor involved in nucleotide excision repair (NER) of DNA.probableP87303

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3DOM, chain A
Confidence level:confident
Coverage over the Query: 377-406
View the alignment between query and template
View the model in PyMOL