BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015410
(407 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PNQ|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
pdb|2PNQ|B Chain B, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
Length = 467
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 303 GNDLYTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPM 362
G DL+ N GDSRA+L +E S A+ L+ H +NE E RL EHP +
Sbjct: 210 GVDLHVANTGDSRAMLGVQEEDGSWS------AVTLSNDHNAQNERELQRLKLEHPKNEA 263
Query: 363 P--ILAGKVKGKLKVTRAFG 380
+ ++ G L RAFG
Sbjct: 264 KSVVKQDRLLGLLMPFRAFG 283
>pdb|3MQ3|A Chain A, Crystal Structure Of Native Bovine Pdp1c
pdb|3N3C|A Chain A, Crystal Structure Of Native Bovine Pdp1c
Length = 467
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 303 GNDLYTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPM 362
G DL+ N GDSRA+L +E S A+ L+ H +NE E RL EHP +
Sbjct: 210 GVDLHVANTGDSRAMLGVQEEDGSWS------AVTLSNDHNAQNEREVERLKLEHPKNEA 263
Query: 363 P--ILAGKVKGKLKVTRAFG 380
+ ++ G L RAFG
Sbjct: 264 KSVVKQDRLLGLLMPFRAFG 283
>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR PHOSPHATASE
COMPLEXED With Zn2+
Length = 304
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 14/79 (17%)
Query: 302 HGNDLYTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDP 361
HG DLY N GDSR V+ + KA++++ H E+ E R+
Sbjct: 140 HGKDLYVANAGDSRCVVC-----------RNGKALEMSFDHKPEDTVEYQRI---EKAGG 185
Query: 362 MPILAGKVKGKLKVTRAFG 380
L G+V G L ++RA G
Sbjct: 186 RVTLDGRVNGGLNLSRAIG 204
>pdb|2POP|A Chain A, The Crystal Structure Of Tab1 And Bir1 Complex
pdb|2POP|C Chain C, The Crystal Structure Of Tab1 And Bir1 Complex
Length = 353
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 13/67 (19%)
Query: 304 NDLYTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMP 363
N LY N+G +RA+L S L+ QL HT ENEDE RL +
Sbjct: 159 NKLYVANVGTNRALLCK-------STVDGLQVTQLNVDHTTENEDELFRL------SQLG 205
Query: 364 ILAGKVK 370
+ AGK+K
Sbjct: 206 LDAGKIK 212
>pdb|2POM|A Chain A, Tab1 With Manganese Ion
Length = 372
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 13/67 (19%)
Query: 304 NDLYTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMP 363
N LY N+G +RA+L S L+ QL HT ENEDE RL +
Sbjct: 178 NKLYVANVGTNRALLCK-------STVDGLQVTQLNVDHTTENEDELFRL------SQLG 224
Query: 364 ILAGKVK 370
+ AGK+K
Sbjct: 225 LDAGKIK 231
>pdb|2J4O|A Chain A, Structure Of Tab1
Length = 401
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 13/67 (19%)
Query: 304 NDLYTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMP 363
N LY N+G +RA+L S L+ QL HT ENEDE RL +
Sbjct: 176 NKLYVANVGTNRALLCK-------STVDGLQVTQLNVDHTTENEDELFRL------SQLG 222
Query: 364 ILAGKVK 370
+ AGK+K
Sbjct: 223 LDAGKIK 229
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase Phosphatase With Mg (Ii) Ions At The
Active Site
Length = 389
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 11/51 (21%)
Query: 303 GNDLYTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRL 353
G +L ++GDSRA+L ++ K ++LT HT E +DE+ R+
Sbjct: 227 GIELVVASVGDSRAILC-----------RKGKPMKLTIDHTPERKDEKERI 266
>pdb|2IQ1|A Chain A, Crystal Structure Of Human Ppm1k
Length = 274
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 11/51 (21%)
Query: 303 GNDLYTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRL 353
G +L ++GDSRA+L ++ K ++LT HT E +DE+ R+
Sbjct: 113 GIELVVASVGDSRAILC-----------RKGKPMKLTIDHTPERKDEKERI 152
>pdb|3E7E|A Chain A, Structure And Substrate Recruitment Of The Human Spindle
Checkpoint Kinase Bub
Length = 365
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 13/58 (22%)
Query: 184 DAADFLAGT-------------LYESVMFYSNLFEWESKIDATRAPDDSEFGGHLQYI 228
DA +F+ G L + V Y N FEW+ K+ A + + + G L Y+
Sbjct: 12 DAPNFIVGNPWDDKLIFKLLSGLSKPVSSYPNTFEWQCKLPAIKPKTEFQLGSKLVYV 69
>pdb|2YPV|L Chain L, Crystal Structure Of The Meningococcal Vaccine Antigen
Factor H Binding Protein In Complex With A Bactericidal
Antibody
Length = 214
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 139 RSEGILNGMEVQVAGGAAGEDRVQAVCS---EEHGLLFCAIYDGF 180
R+ +++G+ + +GG +G+D + S E+ G+ +C YD F
Sbjct: 50 RANRLVDGVPSRFSGGGSGQDYSLTISSLEFEDIGIYYCLQYDEF 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,637,246
Number of Sequences: 62578
Number of extensions: 386287
Number of successful extensions: 725
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 715
Number of HSP's gapped (non-prelim): 16
length of query: 407
length of database: 14,973,337
effective HSP length: 101
effective length of query: 306
effective length of database: 8,652,959
effective search space: 2647805454
effective search space used: 2647805454
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)