BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015411
(407 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 234 bits (597), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 128/318 (40%), Positives = 188/318 (59%), Gaps = 9/318 (2%)
Query: 23 IGINYGQIANNLPTPENVIPLVKSIGATRVKLYDADPKVLKAFANTGVEFTVSLGNEYLA 82
IG+ YG + NNLP P V+ L KS R++LYD + L+A N+ ++ + + +
Sbjct: 1 IGVCYGMLGNNLPPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQ 60
Query: 83 KM-RDPDCAKAWIKSNVQAYLPATKITCITVGNEVLTFNDTSLSGCLLPAMESVHTALVN 141
+ +P A WI+ NV AY P+ I VGNE++ +D L+ +LPAM +++ AL +
Sbjct: 61 SLASNPSAAGDWIRRNVVAYWPSVSFRYIAVGNELIPGSD--LAQYILPAMRNIYNALSS 118
Query: 142 LGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFA 201
GL Q+ V+TA GVLG+SYPPSAGAF ++PI+ F +P L+N YPYF+
Sbjct: 119 AGLQNQIKVSTAVDTGVLGTSYPPSAGAFSSAAQAYLSPIVQFLASNGAPLLVNVYPYFS 178
Query: 202 YKGSPKQVSLDFVLFQPNQGIVDPASNLHYDNMLFAQIDAVYAALASLGYKKLLLHISET 261
Y G+P Q+SL + LF + G+V Y N+ A +DAV+AAL +G + + +SE+
Sbjct: 179 YTGNPGQISLPYALFTAS-GVVVQDGRFSYQNLFDAIVDAVFAALERVGGANVAVVVSES 237
Query: 262 GWPSKGDEDEAGATPENAKKYNGNLIKLISSKKGTPMRPNCDLNIYVFALFNENLKPGPT 321
GWPS G EA + NA+ YN NLI+ + GTP RP ++ Y+F +FNEN K G
Sbjct: 238 GWPSAGGGAEASTS--NAQTYNQNLIRHVGG--GTPRRPGKEIEAYIFEMFNENQKAGGI 293
Query: 322 SERNYGLFKPDGSPAYSL 339
E+N+GLF P+ P Y +
Sbjct: 294 -EQNFGLFYPNKQPVYQI 310
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 223 bits (568), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 122/319 (38%), Positives = 185/319 (57%), Gaps = 9/319 (2%)
Query: 23 IGINYGQIANNLPTPENVIPLVKSIGATRVKLYDADPKVLKAFANTGVEFTVSLGNEYLA 82
+G+ YG NNLP VI L K TR+++YD + VL+A + +E + + N L
Sbjct: 2 VGVCYGMQGNNLPPVSEVIALYKKSNITRMRIYDPNQAVLEALRGSNIELILGVPNSDLQ 61
Query: 83 KMRDPDCAKAWIKSNVQAYLPATKITCITVGNEVLTFNDTS--LSGCLLPAMESVHTALV 140
+ +P AK+W++ NV+ + + + I VGNE+ N + L+ +LPAM ++H A+
Sbjct: 62 SLTNPSNAKSWVQKNVRGFWSSVRFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIHDAIR 121
Query: 141 NLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYF 200
+ GL Q+ V+TA L ++G+SYPPSAGAFR D+ + PI+ F SP L N YPYF
Sbjct: 122 SAGLQDQIKVSTAIDLTLVGNSYPPSAGAFRDDVRSYLNPIIRFLSSIRSPLLANIYPYF 181
Query: 201 AYKGSPKQVSLDFVLFQPNQGIVDPASNLHYDNMLFAQIDAVYAALASLGYKKLLLHISE 260
Y G+P+ +SL + LF + +V Y N+ A +DA+Y+AL L + +SE
Sbjct: 182 TYAGNPRDISLPYALFT-SPSVVVWDGQRGYKNLFDATLDALYSALERASGGSLEVVVSE 240
Query: 261 TGWPSKGDEDEAGATPENAKKYNGNLIKLISSKKGTPMRPNCDLNIYVFALFNENLKPGP 320
+GWPS G AT +N + Y NLI+ + K+GTP RP + Y+FA+F+EN K P
Sbjct: 241 SGWPSAG---AFAATFDNGRTYLSNLIQHV--KRGTPKRPKRAIETYLFAMFDEN-KKQP 294
Query: 321 TSERNYGLFKPDGSPAYSL 339
E+++GLF P+ Y+L
Sbjct: 295 EVEKHFGLFFPNKWQKYNL 313
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 207 bits (526), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 119/318 (37%), Positives = 180/318 (56%), Gaps = 15/318 (4%)
Query: 23 IGINYGQIANNLPTPENVIPLVKSIGATRVKLYDADPKVLKAFANTGVEFTVSLGNEYLA 82
IG+ YG I NNLP+ +V+ L +S G +++Y AD + L A N+G+ + +GN+ LA
Sbjct: 1 IGVCYGVIGNNLPSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQLA 60
Query: 83 KMR-DPDCAKAWIKSNVQAYLPATKITCITVGNEVLTFNDTSLSGCLLPAMESVHTALVN 141
+ A +W+++NV+ Y PA I I GNEV + +LPAM +++ AL
Sbjct: 61 NIAASTSNAASWVQNNVRPYYPAVNIKYIAAGNEV----QGGATQSILPAMRNLNAALSA 116
Query: 142 LGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFA 201
+ V+T+ + +S+PPSAG F+ + + +L T +P L N YPYFA
Sbjct: 117 A-GLGAIKVSTSIRFDEVANSFPPSAGVFKNAYMTDVARLL---ASTGAPLLANVYPYFA 172
Query: 202 YKGSPKQVSLDFVLFQPNQGIVDPASNLHYDNMLFAQIDAVYAALASLGYKKLLLHISET 261
Y+ +P +SL++ FQP + D + L Y ++ A +DAVYAAL G + + +SE+
Sbjct: 173 YRDNPGSISLNYATFQPGTTVRDQNNGLTYTSLFDAMVDAVYAALEKAGAPAVKVVVSES 232
Query: 262 GWPSKGDEDEAGATPENAKKYNGNLIKLISSKKGTPMRPNCDLNIYVFALFNENLKPGPT 321
GWPS G A+ NA+ YN LI + GTP + L Y+FA+FNEN K G
Sbjct: 233 GWPSAGG---FAASAGNARTYNQGLINHVGG--GTPKKREA-LETYIFAMFNENQKTGDA 286
Query: 322 SERNYGLFKPDGSPAYSL 339
+ER++GLF PD SPAY++
Sbjct: 287 TERSFGLFNPDKSPAYNI 304
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 205 bits (521), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 109/318 (34%), Positives = 175/318 (55%), Gaps = 9/318 (2%)
Query: 23 IGINYGQIANNLPTPENVIPLVKSIGATRVKLYDADPKVLKAFANTGVEFTVSLGNEYLA 82
IG+ YG+IANNLP+ ++VI L + ++++Y V A + +E + + N+ L
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 83 KMRDPDCAKAWIKSNVQAYLPATKITCITVGNEVLTFNDTSLSGCLL-PAMESVHTALVN 141
+ +P A W++ N++ + P K I VGNEV ++ + PAME+++ AL +
Sbjct: 63 ALANPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALSS 122
Query: 142 LGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFA 201
GL Q+ V+T+ G+L ++YPP FR++ I PI+ F + P L N YPYF
Sbjct: 123 AGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYPYFG 182
Query: 202 YKGSPKQVSLDFVLFQPNQGIVDPASNLHYDNMLFAQIDAVYAALASLGYKKLLLHISET 261
+ + V L + LF + ++ Y N+ A +D++Y A LG + + + +SE+
Sbjct: 183 HIDNTNAVPLSYALFNQQR-----RNDTGYQNLFDALVDSMYFATEKLGGQNIEIIVSES 237
Query: 262 GWPSKGDEDEAGATPENAKKYNGNLIKLISSKKGTPMRPNCDLNIYVFALFNENLKPGPT 321
GWPS+G AT +NA+ Y NLI + GTP +P + Y+FA+F+EN K G
Sbjct: 238 GWPSEG---HPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGEA 294
Query: 322 SERNYGLFKPDGSPAYSL 339
SE+++GLF PD P Y L
Sbjct: 295 SEKHFGLFNPDQRPKYQL 312
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 108/318 (33%), Positives = 174/318 (54%), Gaps = 9/318 (2%)
Query: 23 IGINYGQIANNLPTPENVIPLVKSIGATRVKLYDADPKVLKAFANTGVEFTVSLGNEYLA 82
IG+ YG+IANNLP+ ++VI L + ++++Y V A + +E + + N+ L
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 83 KMRDPDCAKAWIKSNVQAYLPATKITCITVGNEVLTFNDTSLSGCLL-PAMESVHTALVN 141
+ +P A W++ N++ + P K I VGNEV ++ + PAME+++ AL +
Sbjct: 63 ALANPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALSS 122
Query: 142 LGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFA 201
GL Q+ V+T+ G+L ++YPP FR++ I PI+ F + P L N YPYF
Sbjct: 123 AGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYPYFG 182
Query: 202 YKGSPKQVSLDFVLFQPNQGIVDPASNLHYDNMLFAQIDAVYAALASLGYKKLLLHISET 261
+ + V L + LF + ++ Y N+ A +D++Y A LG + + + +S +
Sbjct: 183 HIDNTNAVPLSYALFNQQR-----RNDTGYQNLFDALVDSMYFATEKLGGQNIEIIVSAS 237
Query: 262 GWPSKGDEDEAGATPENAKKYNGNLIKLISSKKGTPMRPNCDLNIYVFALFNENLKPGPT 321
GWPS+G AT +NA+ Y NLI + GTP +P + Y+FA+F+EN K G
Sbjct: 238 GWPSEG---HPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGEA 294
Query: 322 SERNYGLFKPDGSPAYSL 339
SE+++GLF PD P Y L
Sbjct: 295 SEKHFGLFNPDQRPKYQL 312
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 116/318 (36%), Positives = 170/318 (53%), Gaps = 15/318 (4%)
Query: 23 IGINYGQIANNLPTPENVIPLVKSIGATRVKLYDADPKVLKAFANTGVEFTVSLGNEYLA 82
IG+ YG ANNLP V+ + KS G ++LY + L+A TG+ V N+ L+
Sbjct: 1 IGVCYGMSANNLPAASTVVSMFKSNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLS 60
Query: 83 KMRDPDCAKA-WIKSNVQAYLPATKITCITVGNEVLTFNDTSLSGCLLPAMESVHTALVN 141
+ A A W+KSN+QAY P + VGNEV + L+PAM++VH ALV
Sbjct: 61 NLAASPAAAASWVKSNIQAY-PKVSFRYVCVGNEVAG----GATRNLVPAMKNVHGALVA 115
Query: 142 LGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFA 201
GL + VTT+ S +LG PPSAG+F + + P++ F +T +P + N YPY A
Sbjct: 116 AGLG-HIKVTTSVSQAILGVFSPPSAGSFTGEAAAFMGPVVQFLARTNAPLMANIYPYLA 174
Query: 202 YKGSPKQVSLDFVLFQPNQGIVDPASNLHYDNMLFAQIDAVYAALASLGYKKLLLHISET 261
+ +P + + + LF + +V + Y N+ +DA Y A+ G + L +SE+
Sbjct: 175 WAYNPSAMDMGYALFNASGTVVRDGA-YGYQNLFDTTVDAFYTAMGKHGGSSVKLVVSES 233
Query: 262 GWPSKGDEDEAGATPENAKKYNGNLIKLISSKKGTPMRPNCDLNIYVFALFNENLKPGPT 321
GWPS G ATP NA+ YN +LI + +GTP P + Y+FA+FNEN K
Sbjct: 234 GWPSGGGT---AATPANARFYNQHLINHVG--RGTPRHPGA-IETYIFAMFNENQKDSGV 287
Query: 322 SERNYGLFKPDGSPAYSL 339
E+N+GLF P+ Y +
Sbjct: 288 -EQNWGLFYPNMQHVYPI 304
>pdb|3EYP|A Chain A, Crystal Structure Of Putative Alpha-L-Fucosidase From
Bacteroides Thetaiotaomicron
pdb|3EYP|B Chain B, Crystal Structure Of Putative Alpha-L-Fucosidase From
Bacteroides Thetaiotaomicron
Length = 469
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 11/101 (10%)
Query: 77 GNEYLAKMRDPDCAKAWI-----KSNVQAYLPATKITCITVG-NEVLTFNDTSLSGCLLP 130
G+ Y+ D +W S V++ I C +VG N VL N L+
Sbjct: 246 GDAYIPAETDVSIRPSWFYHAEEDSRVKSVRELWDIYCTSVGRNSVLLLNFPPDRRGLIH 305
Query: 131 AMESVHTALVNLGLDKQVSV-----TTAHSLGVLGSSYPPS 166
+ +S+H AL+ G+D+ S + V G+ Y P
Sbjct: 306 STDSLHAALLKQGIDETFSTNLLRGAKVKATNVRGAKYSPE 346
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,104,358
Number of Sequences: 62578
Number of extensions: 461352
Number of successful extensions: 1112
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1078
Number of HSP's gapped (non-prelim): 8
length of query: 407
length of database: 14,973,337
effective HSP length: 101
effective length of query: 306
effective length of database: 8,652,959
effective search space: 2647805454
effective search space used: 2647805454
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)