Query 015411
Match_columns 407
No_of_seqs 198 out of 1177
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 06:03:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015411.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015411hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 4.2E-88 9.2E-93 669.8 19.4 309 23-341 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 7.4E-47 1.6E-51 359.6 23.8 251 20-333 43-305 (305)
3 PF07745 Glyco_hydro_53: Glyco 99.1 1.8E-08 4E-13 101.5 21.3 248 37-338 26-328 (332)
4 PF03198 Glyco_hydro_72: Gluca 98.9 3.7E-08 8E-13 97.8 16.5 237 22-334 29-294 (314)
5 COG3867 Arabinogalactan endo-1 98.5 6.7E-06 1.5E-10 81.1 17.9 208 37-292 65-328 (403)
6 PRK10150 beta-D-glucuronidase; 98.3 0.00029 6.3E-09 76.4 25.7 240 38-339 316-585 (604)
7 PF00150 Cellulase: Cellulase 98.3 0.00011 2.5E-09 70.3 19.9 128 22-151 10-171 (281)
8 smart00633 Glyco_10 Glycosyl h 97.7 0.0036 7.8E-08 60.7 19.0 214 60-338 20-250 (254)
9 PF11790 Glyco_hydro_cc: Glyco 97.0 0.031 6.7E-07 53.9 15.3 211 47-335 18-232 (239)
10 PF02836 Glyco_hydro_2_C: Glyc 96.8 0.15 3.3E-06 50.2 18.9 95 22-116 17-132 (298)
11 PF00232 Glyco_hydro_1: Glycos 96.2 0.082 1.8E-06 55.7 13.7 116 37-156 60-223 (455)
12 TIGR03356 BGL beta-galactosida 95.5 1.7 3.6E-05 45.7 19.9 79 37-117 56-163 (427)
13 cd02875 GH18_chitobiase Chitob 90.0 2.8 6E-05 43.0 10.8 134 48-200 55-190 (358)
14 PF02449 Glyco_hydro_42: Beta- 83.9 8.5 0.00018 39.3 10.3 82 37-118 12-140 (374)
15 PRK09936 hypothetical protein; 81.1 34 0.00073 34.5 12.8 61 20-80 19-96 (296)
16 cd00598 GH18_chitinase-like Th 79.0 9.6 0.00021 34.9 8.0 84 60-144 53-142 (210)
17 cd02874 GH18_CFLE_spore_hydrol 77.6 7.5 0.00016 38.5 7.3 82 59-144 48-138 (313)
18 cd04734 OYE_like_3_FMN Old yel 74.0 1.1E+02 0.0023 31.2 14.9 129 160-295 61-206 (343)
19 PF01229 Glyco_hydro_39: Glyco 72.2 1.1E+02 0.0024 32.6 14.7 183 109-336 158-350 (486)
20 PF00925 GTP_cyclohydro2: GTP 69.8 4.9 0.00011 36.9 3.4 38 40-77 131-168 (169)
21 TIGR01579 MiaB-like-C MiaB-lik 69.5 68 0.0015 33.2 12.2 61 125-204 272-332 (414)
22 cd02872 GH18_chitolectin_chito 68.7 23 0.0005 35.8 8.4 114 68-201 69-192 (362)
23 cd02873 GH18_IDGF The IDGF's ( 68.5 54 0.0012 34.2 11.3 57 125-201 168-224 (413)
24 smart00481 POLIIIAc DNA polyme 68.1 18 0.0004 27.3 5.8 45 34-78 14-63 (67)
25 cd06545 GH18_3CO4_chitinase Th 67.6 26 0.00057 33.6 8.2 80 60-144 50-133 (253)
26 PF03662 Glyco_hydro_79n: Glyc 65.0 26 0.00055 35.7 7.7 81 61-142 114-203 (319)
27 PRK14334 (dimethylallyl)adenos 61.4 2.2E+02 0.0047 30.0 14.4 57 125-200 271-327 (440)
28 COG4782 Uncharacterized protei 60.5 28 0.00061 36.1 7.1 43 248-293 142-187 (377)
29 TIGR00505 ribA GTP cyclohydrol 58.4 16 0.00035 34.1 4.7 33 41-73 131-163 (191)
30 PRK00393 ribA GTP cyclohydrola 58.0 16 0.00036 34.3 4.7 33 41-73 134-166 (197)
31 PRK09525 lacZ beta-D-galactosi 57.8 76 0.0016 37.3 10.9 96 22-117 352-464 (1027)
32 KOG0626 Beta-glucosidase, lact 57.6 40 0.00086 36.5 7.9 76 249-332 403-486 (524)
33 cd02876 GH18_SI-CLP Stabilin-1 56.9 88 0.0019 31.1 9.9 127 59-201 54-191 (318)
34 COG3934 Endo-beta-mannanase [C 56.4 63 0.0014 34.9 9.0 186 91-339 123-312 (587)
35 PRK13511 6-phospho-beta-galact 55.9 25 0.00054 37.5 6.1 46 37-82 56-120 (469)
36 cd02932 OYE_YqiM_FMN Old yello 54.6 2.4E+02 0.0052 28.4 14.3 132 161-295 62-219 (336)
37 PF14587 Glyco_hydr_30_2: O-Gl 53.4 2.9E+02 0.0063 29.0 14.3 100 60-159 108-233 (384)
38 cd02803 OYE_like_FMN_family Ol 52.5 2.4E+02 0.0053 27.8 12.7 158 131-295 34-206 (327)
39 PF14488 DUF4434: Domain of un 52.5 26 0.00057 32.0 5.0 42 38-79 23-88 (166)
40 smart00636 Glyco_18 Glycosyl h 51.3 50 0.0011 32.8 7.2 79 62-142 57-142 (334)
41 cd02929 TMADH_HD_FMN Trimethyl 50.3 3E+02 0.0066 28.3 13.6 126 163-295 69-215 (370)
42 PRK14328 (dimethylallyl)adenos 49.7 1.8E+02 0.0039 30.5 11.3 59 125-202 281-339 (439)
43 PLN02998 beta-glucosidase 48.7 30 0.00065 37.2 5.4 45 38-82 85-148 (497)
44 cd00641 GTP_cyclohydro2 GTP cy 48.1 29 0.00063 32.4 4.6 33 41-73 133-165 (193)
45 PRK14339 (dimethylallyl)adenos 46.8 2.8E+02 0.006 29.0 12.1 109 125-260 264-372 (420)
46 PRK10340 ebgA cryptic beta-D-g 46.5 1.1E+02 0.0023 36.1 9.8 97 22-118 336-452 (1021)
47 PRK14336 (dimethylallyl)adenos 46.5 3.3E+02 0.0072 28.4 12.6 58 125-201 258-315 (418)
48 PLN02814 beta-glucosidase 45.7 37 0.00079 36.7 5.5 46 37-82 79-143 (504)
49 PLN02849 beta-glucosidase 45.1 56 0.0012 35.2 6.8 45 38-82 82-145 (503)
50 PRK12485 bifunctional 3,4-dihy 44.5 27 0.00059 36.2 4.1 33 40-73 330-362 (369)
51 COG1433 Uncharacterized conser 43.1 80 0.0017 27.6 6.2 40 38-77 55-94 (121)
52 PRK14327 (dimethylallyl)adenos 41.6 4.9E+02 0.011 28.2 14.3 59 125-202 346-404 (509)
53 PRK14330 (dimethylallyl)adenos 41.4 2.7E+02 0.0058 29.2 11.0 111 125-261 274-384 (434)
54 PF05990 DUF900: Alpha/beta hy 40.8 1.1E+02 0.0025 29.2 7.6 42 248-292 44-88 (233)
55 PRK14019 bifunctional 3,4-dihy 40.7 34 0.00073 35.5 4.1 33 41-74 328-360 (367)
56 KOG2775 Metallopeptidase [Gene 40.6 39 0.00084 34.3 4.3 106 125-262 112-220 (397)
57 PF02055 Glyco_hydro_30: O-Gly 39.8 5.2E+02 0.011 27.9 14.1 90 67-156 166-283 (496)
58 PRK09318 bifunctional 3,4-dihy 39.4 43 0.00093 35.0 4.6 39 40-78 319-357 (387)
59 COG0621 MiaB 2-methylthioadeni 39.0 4.9E+02 0.011 27.8 12.4 184 22-262 195-389 (437)
60 PF06180 CbiK: Cobalt chelatas 38.8 3.7E+02 0.0081 26.5 10.9 139 32-202 55-208 (262)
61 PRK09314 bifunctional 3,4-dihy 38.1 43 0.00093 34.4 4.3 34 40-73 300-334 (339)
62 PRK08815 GTP cyclohydrolase; P 37.9 46 0.001 34.6 4.6 37 41-77 305-341 (375)
63 PRK09311 bifunctional 3,4-dihy 37.1 48 0.001 34.8 4.6 38 40-77 338-375 (402)
64 PLN02831 Bifunctional GTP cycl 36.4 49 0.0011 35.3 4.6 38 40-77 372-409 (450)
65 cd02879 GH18_plant_chitinase_c 36.2 91 0.002 30.9 6.3 47 245-292 59-106 (299)
66 PF02449 Glyco_hydro_42: Beta- 36.0 3.2E+02 0.0069 27.8 10.4 55 125-199 208-262 (374)
67 PRK14332 (dimethylallyl)adenos 35.6 4.7E+02 0.01 27.6 11.9 130 107-262 261-396 (449)
68 PRK09319 bifunctional 3,4-dihy 35.2 53 0.0012 35.9 4.7 38 40-77 342-379 (555)
69 cd02930 DCR_FMN 2,4-dienoyl-Co 34.9 5E+02 0.011 26.3 15.2 125 163-295 64-202 (353)
70 cd04743 NPD_PKS 2-Nitropropane 34.8 2.5E+02 0.0055 28.6 9.2 79 21-116 56-134 (320)
71 PRK14331 (dimethylallyl)adenos 34.0 5.7E+02 0.012 26.7 13.0 110 125-261 279-388 (437)
72 cd06548 GH18_chitinase The GH1 32.5 2.4E+02 0.0051 28.1 8.6 116 68-201 83-213 (322)
73 PF12365 DUF3649: Protein of u 32.2 52 0.0011 21.5 2.5 26 382-407 2-28 (28)
74 TIGR03628 arch_S11P archaeal r 32.0 1E+02 0.0022 26.8 5.0 36 38-73 53-101 (114)
75 cd02871 GH18_chitinase_D-like 31.2 2E+02 0.0043 28.7 7.8 79 61-140 65-146 (312)
76 PF00331 Glyco_hydro_10: Glyco 30.4 48 0.001 33.3 3.3 219 60-338 63-312 (320)
77 TIGR03632 bact_S11 30S ribosom 30.2 97 0.0021 26.4 4.6 37 38-74 50-91 (108)
78 PF00704 Glyco_hydro_18: Glyco 30.0 2.1E+02 0.0045 28.1 7.7 76 66-142 70-152 (343)
79 COG4213 XylF ABC-type xylose t 29.6 93 0.002 31.8 5.0 77 59-154 175-251 (341)
80 PF14871 GHL6: Hypothetical gl 29.3 1.3E+02 0.0028 26.5 5.4 43 37-79 2-67 (132)
81 PF04909 Amidohydro_2: Amidohy 28.6 1.3E+02 0.0027 28.1 5.7 117 90-264 57-175 (273)
82 PRK07198 hypothetical protein; 28.2 53 0.0012 34.5 3.1 37 41-77 338-375 (418)
83 COG5016 Pyruvate/oxaloacetate 28.2 89 0.0019 33.1 4.7 38 41-78 104-147 (472)
84 PF13377 Peripla_BP_3: Peripla 28.2 1.8E+02 0.0039 24.7 6.2 110 42-174 2-123 (160)
85 PF02811 PHP: PHP domain; Int 28.0 1.4E+02 0.003 25.9 5.5 47 32-78 13-64 (175)
86 COG4130 Predicted sugar epimer 27.4 5.5E+02 0.012 25.2 9.5 106 35-148 17-140 (272)
87 PRK09997 hydroxypyruvate isome 27.2 5.5E+02 0.012 24.4 10.6 49 25-74 6-58 (258)
88 PRK14042 pyruvate carboxylase 27.1 1.1E+02 0.0023 33.9 5.4 42 37-78 94-145 (596)
89 TIGR01233 lacG 6-phospho-beta- 26.8 1.1E+02 0.0024 32.6 5.3 46 37-82 55-119 (467)
90 PRK09607 rps11p 30S ribosomal 26.7 1.4E+02 0.003 26.7 5.1 36 38-73 60-108 (132)
91 cd01543 PBP1_XylR Ligand-bindi 26.7 4E+02 0.0086 24.7 8.7 127 37-184 97-237 (265)
92 COG3858 Predicted glycosyl hyd 26.6 84 0.0018 33.2 4.2 85 58-145 149-243 (423)
93 PRK13347 coproporphyrinogen II 26.1 54 0.0012 34.6 2.9 21 125-145 262-282 (453)
94 CHL00041 rps11 ribosomal prote 26.0 1.5E+02 0.0033 25.5 5.2 36 38-73 63-103 (116)
95 PRK09593 arb 6-phospho-beta-gl 25.9 1.8E+02 0.004 31.1 6.8 46 37-82 75-140 (478)
96 PF12876 Cellulase-like: Sugar 25.3 2E+02 0.0043 23.0 5.5 48 104-153 8-63 (88)
97 PRK12581 oxaloacetate decarbox 25.2 1.3E+02 0.0029 32.3 5.5 39 40-78 110-154 (468)
98 KOG1412 Aspartate aminotransfe 24.0 59 0.0013 33.4 2.5 142 27-188 188-371 (410)
99 PRK09852 cryptic 6-phospho-bet 24.0 1.9E+02 0.0041 31.0 6.5 46 37-82 73-138 (474)
100 COG0807 RibA GTP cyclohydrolas 23.8 1.5E+02 0.0033 28.1 5.1 39 41-79 133-171 (193)
101 PRK13912 nuclease NucT; Provis 23.6 1.8E+02 0.0038 26.5 5.5 73 1-77 2-80 (177)
102 PF06117 DUF957: Enterobacteri 23.5 1.3E+02 0.0028 23.6 3.7 40 91-142 14-55 (65)
103 TIGR03234 OH-pyruv-isom hydrox 23.1 1.9E+02 0.0041 27.3 5.8 51 23-74 3-57 (254)
104 TIGR03470 HpnH hopanoid biosyn 23.0 7.7E+02 0.017 24.6 11.8 41 35-75 59-106 (318)
105 cd02878 GH18_zymocin_alpha Zym 22.8 6.7E+02 0.015 25.3 10.0 55 125-201 134-189 (345)
106 cd06542 GH18_EndoS-like Endo-b 22.7 5.4E+02 0.012 24.4 8.9 82 59-141 54-143 (255)
107 PRK09589 celA 6-phospho-beta-g 22.4 2.4E+02 0.0053 30.2 6.9 46 37-82 69-134 (476)
108 PRK06552 keto-hydroxyglutarate 22.3 6.8E+02 0.015 23.8 10.5 89 35-140 117-210 (213)
109 TIGR01125 MiaB-like tRNA modif 21.7 9.2E+02 0.02 25.1 12.6 60 125-203 269-328 (430)
110 PRK09989 hypothetical protein; 21.6 6.9E+02 0.015 23.6 11.7 51 23-74 4-58 (258)
111 PF00411 Ribosomal_S11: Riboso 21.6 1.2E+02 0.0025 25.9 3.6 37 38-74 50-91 (110)
112 PRK03941 NTPase; Reviewed 21.5 6.6E+02 0.014 23.3 8.9 61 70-141 1-61 (174)
113 PRK13586 1-(5-phosphoribosyl)- 21.1 6.4E+02 0.014 24.2 9.0 70 35-119 30-108 (232)
114 PF00150 Cellulase: Cellulase 20.8 2.9E+02 0.0063 25.9 6.6 68 238-318 63-134 (281)
115 PRK12331 oxaloacetate decarbox 20.7 1.8E+02 0.0039 31.0 5.5 51 27-79 90-146 (448)
116 PF03102 NeuB: NeuB family; I 20.6 1.9E+02 0.004 28.3 5.2 46 38-83 79-127 (241)
117 PRK08091 ribulose-phosphate 3- 20.5 7.8E+02 0.017 23.8 10.4 100 37-150 80-184 (228)
118 TIGR03581 EF_0839 conserved hy 20.5 1.8E+02 0.004 28.2 4.9 50 22-71 118-179 (236)
119 PF13756 Stimulus_sens_1: Stim 20.1 67 0.0014 27.4 1.8 25 36-60 2-29 (112)
120 PRK14040 oxaloacetate decarbox 20.0 1.8E+02 0.0039 32.2 5.5 50 25-76 89-144 (593)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=4.2e-88 Score=669.85 Aligned_cols=309 Identities=52% Similarity=0.971 Sum_probs=255.0
Q ss_pred eeEEecCCCCCCCCHhHHHHHHhhcCCCEEEeccCChHHHHHHHhcCCeEEEEecccccccCC-CHHHHHHHHHHHhhhh
Q 015411 23 IGINYGQIANNLPTPENVIPLVKSIGATRVKLYDADPKVLKAFANTGVEFTVSLGNEYLAKMR-DPDCAKAWIKSNVQAY 101 (407)
Q Consensus 23 ~GVnYg~~~~nlps~~~v~~llks~gi~~VRlY~~d~~vL~A~a~tgi~v~lGv~n~~l~~~a-~~~~A~~wv~~~v~~~ 101 (407)
+|||||+.+||||+|.++++++|+++|++||||++|+++|+|++++||+|++||+|+++++++ ++..|..|+++||.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 799999999999999999999999999999999999999999999999999999999999997 7889999999999999
Q ss_pred CCCceEEEEEecccccccCCCCchhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCcccccchhhhhhhh
Q 015411 102 LPATKITCITVGNEVLTFNDTSLSGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPI 181 (407)
Q Consensus 102 ~p~~~I~~I~VGNEvl~~~~~s~~~~Ll~am~~v~~aL~~~gl~~~I~VsTa~~~~vl~~s~pPS~g~F~~~l~~~l~~~ 181 (407)
+|.++|++|+||||++..... ..|+|+|+++|++|++.||+++|||+|+++++++..+||||+|.|++++.+.|+++
T Consensus 81 ~~~~~i~~i~VGnEv~~~~~~---~~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~~~ 157 (310)
T PF00332_consen 81 LPAVNIRYIAVGNEVLTGTDN---AYLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMDPL 157 (310)
T ss_dssp TTTSEEEEEEEEES-TCCSGG---GGHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHHHH
T ss_pred CcccceeeeecccccccCccc---eeeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccchhhhhHH
Confidence 999999999999999986432 28999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCeeeecCCCccccCCCCccCcccccccCCCCcccCCCcchhhhHHHHHHHHHHHHHHHcCCCCccEEEeee
Q 015411 182 LDFHVKTASPFLINAYPYFAYKGSPKQVSLDFVLFQPNQGIVDPASNLHYDNMLFAQIDAVYAALASLGYKKLLLHISET 261 (407)
Q Consensus 182 ldfL~~~~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~v~d~~~~~~y~nl~daqvDav~~Al~k~g~~~~~VvVtET 261 (407)
++||.+|+||||+|+||||.|..+|.+++|+||+|+++..++|+ +++|+||||+|+|++++||+|+|+++++|+||||
T Consensus 158 l~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~D~--~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ET 235 (310)
T PF00332_consen 158 LKFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVVDG--GLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGET 235 (310)
T ss_dssp HHHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SEET--TEEESSHHHHHHHHHHHHHHTTT-TT--EEEEEE
T ss_pred HHHhhccCCCceeccchhhhccCCcccCCccccccccccccccc--chhhhHHHHHHHHHHHHHHHHhCCCCceeEEecc
Confidence 99999999999999999999999999999999999998877754 8899999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCCCCCCCCCccEEEEEeecCCCCCCCCCCCceeeecCCCCeeeeeec
Q 015411 262 GWPSKGDEDEAGATPENAKKYNGNLIKLISSKKGTPMRPNCDLNIYVFALFNENLKPGPTSERNYGLFKPDGSPAYSLGI 341 (407)
Q Consensus 262 GWPS~G~~~~~~As~~Na~~y~~~li~~~~~~~GTP~rp~~~~~~y~F~~FDE~wK~G~~~Er~wGlf~~d~~~ky~l~~ 341 (407)
||||+|+ .+|+++||+.|++++++++. +|||+||+..+++||||||||+||+++.+|||||||++||++||+|+|
T Consensus 236 GWPs~G~---~~a~~~nA~~~~~nl~~~~~--~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~~~ky~~~f 310 (310)
T PF00332_consen 236 GWPSAGD---PGATPENAQAYNQNLIKHVL--KGTPLRPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDGTPKYDLDF 310 (310)
T ss_dssp ---SSSS---TTCSHHHHHHHHHHHHHHCC--GBBSSSBSS---EEES-SB--TTSSSSGGGGG--SB-TTSSBSS----
T ss_pred ccccCCC---CCCCcchhHHHHHHHHHHHh--CCCcccCCCCCeEEEEEEecCcCCCCCcccceeeeECCCCCeecCCCC
Confidence 9999999 57999999999999999996 799999999999999999999999998899999999999999999987
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.4e-47 Score=359.62 Aligned_cols=251 Identities=25% Similarity=0.392 Sum_probs=208.5
Q ss_pred cCceeEEecCCCCC--CCCHhHHH---HHHhhcCCCEEEeccCC----hHHHHHHHhcCCeEEEEecccccccCCCHHHH
Q 015411 20 GTSIGINYGQIANN--LPTPENVI---PLVKSIGATRVKLYDAD----PKVLKAFANTGVEFTVSLGNEYLAKMRDPDCA 90 (407)
Q Consensus 20 ~~~~GVnYg~~~~n--lps~~~v~---~llks~gi~~VRlY~~d----~~vL~A~a~tgi~v~lGv~n~~l~~~a~~~~A 90 (407)
-...+|||+++.++ ||+.+++. ++|++.+. .||+|.+| .+|++|+...|+||+||||..+..+- ..
T Consensus 43 ~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t~-~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~----~~ 117 (305)
T COG5309 43 SGFLAFTLGPYNDDGTCKSADQVASDLELLASYTH-SIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIHD----AV 117 (305)
T ss_pred ccccceeccccCCCCCCcCHHHHHhHHHHhccCCc-eEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchhh----hH
Confidence 35889999999986 89998865 55666553 99999988 46889999999999999998753322 22
Q ss_pred HHHHHHHhhhhCCCceEEEEEecccccccCCCCchhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCccc
Q 015411 91 KAWIKSNVQAYLPATKITCITVGNEVLTFNDTSLSGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAF 170 (407)
Q Consensus 91 ~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~s~~~~Ll~am~~v~~aL~~~gl~~~I~VsTa~~~~vl~~s~pPS~g~F 170 (407)
+..+..++.++..++.|++|+||||+|+|++.+ +++|+.+|..+|.+|+.+|++ +||+|+++|.+|.+.
T Consensus 118 ~~til~ay~~~~~~d~v~~v~VGnEal~r~~~t-asql~~~I~~vrsav~~agy~--gpV~T~dsw~~~~~n-------- 186 (305)
T COG5309 118 EKTILSAYLPYNGWDDVTTVTVGNEALNRNDLT-ASQLIEYIDDVRSAVKEAGYD--GPVTTVDSWNVVINN-------- 186 (305)
T ss_pred HHHHHHHHhccCCCCceEEEEechhhhhcCCCC-HHHHHHHHHHHHHHHHhcCCC--CceeecccceeeeCC--------
Confidence 224667888888899999999999999999988 899999999999999999996 589999999999872
Q ss_pred ccchhhhhhhhhhhhhhcCCCeeeecCCCccccCCCCccCcccccccCCCCcccCCCcchhhhHHHHHHHHHHHHHHHcC
Q 015411 171 RKDLVDCITPILDFHVKTASPFLINAYPYFAYKGSPKQVSLDFVLFQPNQGIVDPASNLHYDNMLFAQIDAVYAALASLG 250 (407)
Q Consensus 171 ~~~l~~~l~~~ldfL~~~~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~v~d~~~~~~y~nl~daqvDav~~Al~k~g 250 (407)
+.+|+..|| +|+|.||||+.+...+ +. + .++..|+.-++.+ .|
T Consensus 187 -----p~l~~~SDf-------ia~N~~aYwd~~~~a~------------------~~---~-~f~~~q~e~vqsa---~g 229 (305)
T COG5309 187 -----PELCQASDF-------IAANAHAYWDGQTVAN------------------AA---G-TFLLEQLERVQSA---CG 229 (305)
T ss_pred -----hHHhhhhhh-------hhcccchhccccchhh------------------hh---h-HHHHHHHHHHHHh---cC
Confidence 478899999 8999999998764211 11 1 2445567777766 33
Q ss_pred CCCccEEEeeeccCCCCCCCC-CCCCHHHHHHHHHHHHHHHhccCCCCCCCCCCccEEEEEeecCCCCC-CC-CCCCcee
Q 015411 251 YKKLLLHISETGWPSKGDEDE-AGATPENAKKYNGNLIKLISSKKGTPMRPNCDLNIYVFALFNENLKP-GP-TSERNYG 327 (407)
Q Consensus 251 ~~~~~VvVtETGWPS~G~~~~-~~As~~Na~~y~~~li~~~~~~~GTP~rp~~~~~~y~F~~FDE~wK~-G~-~~Er~wG 327 (407)
.+|+++|+||||||+|..+| +.||++||+.|+++++|.+++ ..+++|+||+|||+||. |. .+|+|||
T Consensus 230 -~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~---------~G~d~fvfeAFdd~WK~~~~y~VEkywG 299 (305)
T COG5309 230 -TKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRS---------CGYDVFVFEAFDDDWKADGSYGVEKYWG 299 (305)
T ss_pred -CCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhc---------cCccEEEeeeccccccCccccchhhcee
Confidence 34999999999999999998 899999999999999999864 34899999999999995 44 7999999
Q ss_pred eecCCC
Q 015411 328 LFKPDG 333 (407)
Q Consensus 328 lf~~d~ 333 (407)
+++.|+
T Consensus 300 v~~s~~ 305 (305)
T COG5309 300 VLSSDR 305 (305)
T ss_pred eeccCC
Confidence 999875
No 3
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.07 E-value=1.8e-08 Score=101.48 Aligned_cols=248 Identities=18% Similarity=0.237 Sum_probs=122.0
Q ss_pred HhHHHHHHhhcCCCEEEe--cc-C------C-hHHH---HHHHhcCCeEEEEecccc---------cc-cCC--CHHH--
Q 015411 37 PENVIPLVKSIGATRVKL--YD-A------D-PKVL---KAFANTGVEFTVSLGNEY---------LA-KMR--DPDC-- 89 (407)
Q Consensus 37 ~~~v~~llks~gi~~VRl--Y~-~------d-~~vL---~A~a~tgi~v~lGv~n~~---------l~-~~a--~~~~-- 89 (407)
.++.+++||..|++.||+ |. + | ..++ +.+++.||+|+|-.--+| ++ +.. +.++
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 467899999999986665 41 1 1 2344 456679999999986543 11 111 1111
Q ss_pred --HHHHHHHHhhhhC-CCceEEEEEeccccccc-----CCCCchhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccc
Q 015411 90 --AKAWIKSNVQAYL-PATKITCITVGNEVLTF-----NDTSLSGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGS 161 (407)
Q Consensus 90 --A~~wv~~~v~~~~-p~~~I~~I~VGNEvl~~-----~~~s~~~~Ll~am~~v~~aL~~~gl~~~I~VsTa~~~~vl~~ 161 (407)
..+..++-+...- -+..++.|-||||+-.+ +...-.+.+...++.-.+|+|+..-+.+|-|-.+...+
T Consensus 106 ~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~~---- 181 (332)
T PF07745_consen 106 KAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPNIKVMLHLANGGD---- 181 (332)
T ss_dssp HHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES-TTS----
T ss_pred HHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCCc----
Confidence 1122222222111 24678899999998653 22233677888888888888885543233333222111
Q ss_pred cCCCCCcccccchhhhhhhhhhhhhhcCCCeeeecCCCccccCCCCccCcccccccCCCCcccCCCcchhhhHHHHHHHH
Q 015411 162 SYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFAYKGSPKQVSLDFVLFQPNQGIVDPASNLHYDNMLFAQIDA 241 (407)
Q Consensus 162 s~pPS~g~F~~~l~~~l~~~ldfL~~~~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~v~d~~~~~~y~nl~daqvDa 241 (407)
...|+-=+..+...-+|| +.++++.||||... . +-+...++.
T Consensus 182 -----~~~~~~~f~~l~~~g~d~-----DviGlSyYP~w~~~---------------------------l-~~l~~~l~~ 223 (332)
T PF07745_consen 182 -----NDLYRWFFDNLKAAGVDF-----DVIGLSYYPFWHGT---------------------------L-EDLKNNLND 223 (332)
T ss_dssp -----HHHHHHHHHHHHHTTGG------SEEEEEE-STTST----------------------------H-HHHHHHHHH
T ss_pred -----hHHHHHHHHHHHhcCCCc-----ceEEEecCCCCcch---------------------------H-HHHHHHHHH
Confidence 111110011111223444 44899999999641 0 122223333
Q ss_pred HHHHHHHcCCCCccEEEeeeccCCCCCC-----C---------CCCCCHHHHHHHHHHHHHHHhccCCCCCCCCCCccEE
Q 015411 242 VYAALASLGYKKLLLHISETGWPSKGDE-----D---------EAGATPENAKKYNGNLIKLISSKKGTPMRPNCDLNIY 307 (407)
Q Consensus 242 v~~Al~k~g~~~~~VvVtETGWPS~G~~-----~---------~~~As~~Na~~y~~~li~~~~~~~GTP~rp~~~~~~y 307 (407)
+. ++. +|+|+|.|||||..-+. + +..+|++.|+.|++++++.+.+- |. +..+-+|
T Consensus 224 l~---~ry---~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~---p~--~~g~Gvf 292 (332)
T PF07745_consen 224 LA---SRY---GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNV---PN--GGGLGVF 292 (332)
T ss_dssp HH---HHH---T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS-------TTEEEEE
T ss_pred HH---HHh---CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHh---cc--CCeEEEE
Confidence 32 333 48999999999998211 1 12368999999999999998752 11 1235566
Q ss_pred EEEe-ecCCC-----CCCCCCCCceeeecCCCCeeee
Q 015411 308 VFAL-FNENL-----KPGPTSERNYGLFKPDGSPAYS 338 (407)
Q Consensus 308 ~F~~-FDE~w-----K~G~~~Er~wGlf~~d~~~ky~ 338 (407)
+-|- .-..+ ..|...|.. +||+.+|++--.
T Consensus 293 YWeP~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~l~s 328 (332)
T PF07745_consen 293 YWEPAWIPVENGWDWGGGSSWDNQ-ALFDFNGNALPS 328 (332)
T ss_dssp EE-TT-GGGTTHHHHTTTSSSSBG-SSB-TTSBB-GG
T ss_pred eeccccccCCcccccCCCCCcccc-ccCCCCCCCchH
Confidence 6552 22221 234444444 899988876433
No 4
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.93 E-value=3.7e-08 Score=97.80 Aligned_cols=237 Identities=22% Similarity=0.374 Sum_probs=116.8
Q ss_pred ceeEEecCCCC-------C-CCC---HhHHHHHHhhcCCCEEEeccCCh-----HHHHHHHhcCCeEEEEecccccccCC
Q 015411 22 SIGINYGQIAN-------N-LPT---PENVIPLVKSIGATRVKLYDADP-----KVLKAFANTGVEFTVSLGNEYLAKMR 85 (407)
Q Consensus 22 ~~GVnYg~~~~-------n-lps---~~~v~~llks~gi~~VRlY~~d~-----~vL~A~a~tgi~v~lGv~n~~l~~~a 85 (407)
..||.|-|-++ | |-. .++++.+||.+|++.||+|..|| .-+++|++.||.|++.+... -.++.
T Consensus 29 ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p-~~sI~ 107 (314)
T PF03198_consen 29 IKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTP-NGSIN 107 (314)
T ss_dssp EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BT-TBS--
T ss_pred EeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCC-Ccccc
Confidence 46999988765 1 112 24578899999999999998883 57889999999999999865 23332
Q ss_pred --CHH-----HHHHHHHHHhhhhCCCceEEEEEecccccccC-CCCchhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecc
Q 015411 86 --DPD-----CAKAWIKSNVQAYLPATKITCITVGNEVLTFN-DTSLSGCLLPAMESVHTALVNLGLDKQVSVTTAHSLG 157 (407)
Q Consensus 86 --~~~-----~A~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~-~~s~~~~Ll~am~~v~~aL~~~gl~~~I~VsTa~~~~ 157 (407)
++. .-.+-..+-|..+..=+++-+..+|||++... ....++.+-.++|++|+-+++.++. +|||+-+-.-.
T Consensus 108 r~~P~~sw~~~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R-~IPVGYsaaD~ 186 (314)
T PF03198_consen 108 RSDPAPSWNTDLLDRYFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYR-SIPVGYSAADD 186 (314)
T ss_dssp TTS------HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE---
T ss_pred CCCCcCCCCHHHHHHHHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCC-CCceeEEccCC
Confidence 220 00111223334443336899999999999764 3334788888999999999999985 69998764321
Q ss_pred cccccCCCCCcccccchhhhhh-----hhhhhhhhcCCCeeeecCCCccccCCCCccCcccccccCCCCcccCCCcchhh
Q 015411 158 VLGSSYPPSAGAFRKDLVDCIT-----PILDFHVKTASPFLINAYPYFAYKGSPKQVSLDFVLFQPNQGIVDPASNLHYD 232 (407)
Q Consensus 158 vl~~s~pPS~g~F~~~l~~~l~-----~~ldfL~~~~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~v~d~~~~~~y~ 232 (407)
..+|.++..++. .-+|| +++|.|-+=... .|+. ..|+
T Consensus 187 ----------~~~r~~~a~Yl~Cg~~~~~iDf-------~g~N~Y~WCg~S-----------tf~~----------SGy~ 228 (314)
T PF03198_consen 187 ----------AEIRQDLANYLNCGDDDERIDF-------FGLNSYEWCGDS-----------TFET----------SGYD 228 (314)
T ss_dssp ----------TTTHHHHHHHTTBTT-----S--------EEEEE----SS-------------HHH----------HSHH
T ss_pred ----------hhHHHHHHHHhcCCCcccccce-------eeeccceecCCC-----------cccc----------ccHH
Confidence 123444443332 24566 899998543210 1210 1244
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCCCCCCCCCccEEEEEee
Q 015411 233 NMLFAQIDAVYAALASLGYKKLLLHISETGWPSKGDEDEAGATPENAKKYNGNLIKLISSKKGTPMRPNCDLNIYVFALF 312 (407)
Q Consensus 233 nl~daqvDav~~Al~k~g~~~~~VvVtETGWPS~G~~~~~~As~~Na~~y~~~li~~~~~~~GTP~rp~~~~~~y~F~~F 312 (407)
.+.+. . .++ .+||..+|.|--+... ..=.+-+..|-. -|..+.+ --.+||.|
T Consensus 229 ~l~~~--------f--~~y-~vPvffSEyGCn~~~p----R~f~ev~aly~~-~Mt~v~S------------GGivYEy~ 280 (314)
T PF03198_consen 229 RLTKE--------F--SNY-SVPVFFSEYGCNTVTP----RTFTEVPALYSP-EMTDVWS------------GGIVYEYF 280 (314)
T ss_dssp HHHHH--------H--TT--SS-EEEEEE---SSSS-------THHHHHTSH-HHHTTEE------------EEEES-SB
T ss_pred HHHHH--------h--hCC-CCCeEEcccCCCCCCC----ccchHhHHhhCc-cchhhee------------ceEEEEEe
Confidence 44332 2 344 5999999999976542 111122233322 2333332 24567777
Q ss_pred cCCCCCCCCCCCceeeecCCCC
Q 015411 313 NENLKPGPTSERNYGLFKPDGS 334 (407)
Q Consensus 313 DE~wK~G~~~Er~wGlf~~d~~ 334 (407)
-| +.+|||...++.
T Consensus 281 ~e--------~n~yGlV~~~~~ 294 (314)
T PF03198_consen 281 QE--------ANNYGLVEISGD 294 (314)
T ss_dssp ----------SSS--SEEE-TT
T ss_pred cc--------CCceEEEEEcCC
Confidence 65 468999877654
No 5
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.52 E-value=6.7e-06 Score=81.09 Aligned_cols=208 Identities=18% Similarity=0.259 Sum_probs=117.9
Q ss_pred HhHHHHHHhhcCCCEEEe--c----cCC--------hH------HHHHHHhcCCeEEEEecccccccC-CCHHHHHHH--
Q 015411 37 PENVIPLVKSIGATRVKL--Y----DAD--------PK------VLKAFANTGVEFTVSLGNEYLAKM-RDPDCAKAW-- 93 (407)
Q Consensus 37 ~~~v~~llks~gi~~VRl--Y----~~d--------~~------vL~A~a~tgi~v~lGv~n~~l~~~-a~~~~A~~w-- 93 (407)
.++.+++||.+|++.||| | |.| .+ +-+.+++.||||++-.--+|.-+= +.+..-.+|
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~~ 144 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKAWEN 144 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcHHhhh
Confidence 567889999999986665 3 444 12 333456789999998866542110 111111223
Q ss_pred -----HHHHhhhhC---------CCceEEEEEeccccccc-----CCCCchhhHHHHHHHHHHHHHhCCCCCCeEEeeee
Q 015411 94 -----IKSNVQAYL---------PATKITCITVGNEVLTF-----NDTSLSGCLLPAMESVHTALVNLGLDKQVSVTTAH 154 (407)
Q Consensus 94 -----v~~~v~~~~---------p~~~I~~I~VGNEvl~~-----~~~s~~~~Ll~am~~v~~aL~~~gl~~~I~VsTa~ 154 (407)
++.+|-.|. -+..+..|-||||.-.. ++..-...+...++.--+++|... ..|+|---
T Consensus 145 l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~--p~ikv~lH- 221 (403)
T COG3867 145 LNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVS--PTIKVALH- 221 (403)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcC--CCceEEEE-
Confidence 233333321 12457789999998543 222124555555555556665532 35665432
Q ss_pred ecccccccCCCCCcccccchhhhhhhhhhhhhhcCCCeeeecCCCccccCCCCccCcccccccCCCCcccCCCcchhhhH
Q 015411 155 SLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFAYKGSPKQVSLDFVLFQPNQGIVDPASNLHYDNM 234 (407)
Q Consensus 155 ~~~vl~~s~pPS~g~F~~~l~~~l~~~ldfL~~~~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~v~d~~~~~~y~nl 234 (407)
+.+ |--.+.|+-=...+-+.-+|| +.|.+--||||...-+ .++ +||
T Consensus 222 ----la~--g~~n~~y~~~fd~ltk~nvdf-----DVig~SyYpyWhgtl~----------------------nL~-~nl 267 (403)
T COG3867 222 ----LAE--GENNSLYRWIFDELTKRNVDF-----DVIGSSYYPYWHGTLN----------------------NLT-TNL 267 (403)
T ss_pred ----ecC--CCCCchhhHHHHHHHHcCCCc-----eEEeeeccccccCcHH----------------------HHH-hHH
Confidence 222 222345542222334556677 4578899999976311 111 122
Q ss_pred HHHHHHHHHHHHHHcCCCCccEEEeeecc--------------CCCCCCCCCCCCHHHHHHHHHHHHHHHhc
Q 015411 235 LFAQIDAVYAALASLGYKKLLLHISETGW--------------PSKGDEDEAGATPENAKKYNGNLIKLISS 292 (407)
Q Consensus 235 ~daqvDav~~Al~k~g~~~~~VvVtETGW--------------PS~G~~~~~~As~~Na~~y~~~li~~~~~ 292 (407)
- .+- .+ + +|.|+|.||+. |+.+...+...|++-|++|.+++|..+..
T Consensus 268 ~-----dia---~r--Y-~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~n 328 (403)
T COG3867 268 N-----DIA---SR--Y-HKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKN 328 (403)
T ss_pred H-----HHH---HH--h-cCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHh
Confidence 1 111 11 2 58999999998 55553333457889999999999999864
No 6
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.29 E-value=0.00029 Score=76.43 Aligned_cols=240 Identities=13% Similarity=0.103 Sum_probs=136.5
Q ss_pred hHHHHHHhhcCCCEEEec--cCChHHHHHHHhcCCeEEEEecccc---------------cccCC----C---HHHHHHH
Q 015411 38 ENVIPLVKSIGATRVKLY--DADPKVLKAFANTGVEFTVSLGNEY---------------LAKMR----D---PDCAKAW 93 (407)
Q Consensus 38 ~~v~~llks~gi~~VRlY--~~d~~vL~A~a~tgi~v~lGv~n~~---------------l~~~a----~---~~~A~~w 93 (407)
.++++++|.+|++.||+- -.++..+.++-..||-|+.=++... ..... + .+.....
T Consensus 316 ~~d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (604)
T PRK10150 316 VHDHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQA 395 (604)
T ss_pred HHHHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccccccccccccccccchhHHHHHHHH
Confidence 346789999999999993 3357899999999999986543210 00110 1 1222333
Q ss_pred HHHHhhhhCCCceEEEEEecccccccCCCCchhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCcccccc
Q 015411 94 IKSNVQAYLPATKITCITVGNEVLTFNDTSLSGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKD 173 (407)
Q Consensus 94 v~~~v~~~~p~~~I~~I~VGNEvl~~~~~s~~~~Ll~am~~v~~aL~~~gl~~~I~VsTa~~~~vl~~s~pPS~g~F~~~ 173 (407)
+++.|..+.---.|..-++|||.-... ...-..++.+.+.+++.. ..=+|+.+.... . +|.
T Consensus 396 ~~~mv~r~~NHPSIi~Ws~gNE~~~~~-----~~~~~~~~~l~~~~k~~D--ptR~vt~~~~~~---~--~~~------- 456 (604)
T PRK10150 396 IRELIARDKNHPSVVMWSIANEPASRE-----QGAREYFAPLAELTRKLD--PTRPVTCVNVMF---A--TPD------- 456 (604)
T ss_pred HHHHHHhccCCceEEEEeeccCCCccc-----hhHHHHHHHHHHHHHhhC--CCCceEEEeccc---C--Ccc-------
Confidence 555666543223578999999974321 122234444445554433 233566654211 0 110
Q ss_pred hhhhhhhhhhhhhhcCCCeeeecCCCccccCCCCccCcccccccCCCCcccCCCcchhhhHHHHHHHHHHHHHHHcCCCC
Q 015411 174 LVDCITPILDFHVKTASPFLINAYPYFAYKGSPKQVSLDFVLFQPNQGIVDPASNLHYDNMLFAQIDAVYAALASLGYKK 253 (407)
Q Consensus 174 l~~~l~~~ldfL~~~~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~v~d~~~~~~y~nl~daqvDav~~Al~k~g~~~ 253 (407)
...+.+++|+ ++.|.|+=|-. +..+. ......++..++.. .+. + +
T Consensus 457 -~~~~~~~~Dv-------~~~N~Y~~wy~--~~~~~-------------------~~~~~~~~~~~~~~----~~~-~-~ 501 (604)
T PRK10150 457 -TDTVSDLVDV-------LCLNRYYGWYV--DSGDL-------------------ETAEKVLEKELLAW----QEK-L-H 501 (604)
T ss_pred -cccccCcccE-------EEEcccceecC--CCCCH-------------------HHHHHHHHHHHHHH----HHh-c-C
Confidence 0123456788 78998863311 10000 00111222222221 111 2 7
Q ss_pred ccEEEeeeccCCC----CCCCCCCCCHHHHHHHHHHHHHHHhccCCCCCCCCCCccEEEEEeecCCCCCCC--CCCCcee
Q 015411 254 LLLHISETGWPSK----GDEDEAGATPENAKKYNGNLIKLISSKKGTPMRPNCDLNIYVFALFNENLKPGP--TSERNYG 327 (407)
Q Consensus 254 ~~VvVtETGWPS~----G~~~~~~As~~Na~~y~~~li~~~~~~~GTP~rp~~~~~~y~F~~FDE~wK~G~--~~Er~wG 327 (407)
||++++|.|+.+. +..+ ..-|.+.|..|++...+.+.+ +|. -.-.|+..+||-....|. ....+.|
T Consensus 502 kP~~isEyg~~~~~~~h~~~~-~~~~ee~q~~~~~~~~~~~~~------~p~-~~G~~iW~~~D~~~~~g~~~~~g~~~G 573 (604)
T PRK10150 502 KPIIITEYGADTLAGLHSMYD-DMWSEEYQCAFLDMYHRVFDR------VPA-VVGEQVWNFADFATSQGILRVGGNKKG 573 (604)
T ss_pred CCEEEEccCCccccccccCCC-CCCCHHHHHHHHHHHHHHHhc------CCc-eEEEEEEeeeccCCCCCCcccCCCcce
Confidence 9999999997663 2212 234688899998888777653 333 367999999996655432 1235889
Q ss_pred eecCCCCeeeee
Q 015411 328 LFKPDGSPAYSL 339 (407)
Q Consensus 328 lf~~d~~~ky~l 339 (407)
|++.||+||-..
T Consensus 574 l~~~dr~~k~~~ 585 (604)
T PRK10150 574 IFTRDRQPKSAA 585 (604)
T ss_pred eEcCCCCChHHH
Confidence 999999999654
No 7
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.28 E-value=0.00011 Score=70.26 Aligned_cols=128 Identities=19% Similarity=0.143 Sum_probs=82.6
Q ss_pred ceeEEecCCCCCCCCHhHHHHHHhhcCCCEEEeccC-------------C-------hHHHHHHHhcCCeEEEEecccc-
Q 015411 22 SIGINYGQIANNLPTPENVIPLVKSIGATRVKLYDA-------------D-------PKVLKAFANTGVEFTVSLGNEY- 80 (407)
Q Consensus 22 ~~GVnYg~~~~nlps~~~v~~llks~gi~~VRlY~~-------------d-------~~vL~A~a~tgi~v~lGv~n~~- 80 (407)
..|+|-. ..++. ..+++++.++++|++.|||.-. + ..+|+++++.||+|+|-+....
T Consensus 10 ~~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~ 87 (281)
T PF00150_consen 10 WRGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPG 87 (281)
T ss_dssp EEEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTT
T ss_pred eeeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 3455554 22222 6789999999999999999621 1 2588888999999999988641
Q ss_pred ----cccCCCHHHHHHHHHH---HhhhhC-CCceEEEEEecccccccCCCC-----chhhHHHHHHHHHHHHHhCCCCCC
Q 015411 81 ----LAKMRDPDCAKAWIKS---NVQAYL-PATKITCITVGNEVLTFNDTS-----LSGCLLPAMESVHTALVNLGLDKQ 147 (407)
Q Consensus 81 ----l~~~a~~~~A~~wv~~---~v~~~~-p~~~I~~I~VGNEvl~~~~~s-----~~~~Ll~am~~v~~aL~~~gl~~~ 147 (407)
............|+++ .+...+ ....|.++=+.||+....... ....+.+.++.+.+++++.+-...
T Consensus 88 w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~ 167 (281)
T PF00150_consen 88 WANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHL 167 (281)
T ss_dssp CSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSE
T ss_pred ccccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcce
Confidence 1111223333344333 333333 344578999999998764321 137788999999999999987643
Q ss_pred eEEe
Q 015411 148 VSVT 151 (407)
Q Consensus 148 I~Vs 151 (407)
|-|.
T Consensus 168 i~~~ 171 (281)
T PF00150_consen 168 IIVG 171 (281)
T ss_dssp EEEE
T ss_pred eecC
Confidence 4333
No 8
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.73 E-value=0.0036 Score=60.70 Aligned_cols=214 Identities=18% Similarity=0.154 Sum_probs=112.5
Q ss_pred HHHHHHHhcCCeEEE--EecccccccCC---C----HHHHHHHHHHHhhhhCCCceEEEEEecccccccCCC----Cchh
Q 015411 60 KVLKAFANTGVEFTV--SLGNEYLAKMR---D----PDCAKAWIKSNVQAYLPATKITCITVGNEVLTFNDT----SLSG 126 (407)
Q Consensus 60 ~vL~A~a~tgi~v~l--Gv~n~~l~~~a---~----~~~A~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~----s~~~ 126 (407)
.+++.+++.||+|-- =+|....+... + .+.-.+++++.+..| . .+|..+-|.||.+..... +...
T Consensus 20 ~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~~~~~~~~~~~~~i~~v~~ry-~-g~i~~wdV~NE~~~~~~~~~~~~~w~ 97 (254)
T smart00633 20 AIVNFAKENGIKVRGHTLVWHSQTPDWVFNLSKETLLARLENHIKTVVGRY-K-GKIYAWDVVNEALHDNGSGLRRSVWY 97 (254)
T ss_pred HHHHHHHHCCCEEEEEEEeecccCCHhhhcCCHHHHHHHHHHHHHHHHHHh-C-CcceEEEEeeecccCCCcccccchHH
Confidence 355666677777621 14544333321 1 222345666666655 3 469999999999864311 1122
Q ss_pred hHH--HHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCcccccchhhhhhhhhhhhhhcCCCe-eeecCCCcccc
Q 015411 127 CLL--PAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPF-LINAYPYFAYK 203 (407)
Q Consensus 127 ~Ll--~am~~v~~aL~~~gl~~~I~VsTa~~~~vl~~s~pPS~g~F~~~l~~~l~~~ldfL~~~~sp~-~vNiyPyf~~~ 203 (407)
..+ .+++...++.+++. .++++-.-+ +++.. ++ . -...+..+++-|.+.+-|| +|-+...|...
T Consensus 98 ~~~G~~~i~~af~~ar~~~--P~a~l~~Nd-y~~~~---~~---~----k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~ 164 (254)
T smart00633 98 QILGEDYIEKAFRYAREAD--PDAKLFYND-YNTEE---PN---A----KRQAIYELVKKLKAKGVPIDGIGLQSHLSLG 164 (254)
T ss_pred HhcChHHHHHHHHHHHHhC--CCCEEEEec-cCCcC---cc---H----HHHHHHHHHHHHHHCCCccceeeeeeeecCC
Confidence 222 33444444444443 234443322 12211 11 0 0123445666666667665 33332211110
Q ss_pred CCCCccCcccccccCCCCcccCCCcchhhhHHHHHHHHHHHHHHHcCCCCccEEEeeeccCCCCCCCCCCCCHHHHHHHH
Q 015411 204 GSPKQVSLDFVLFQPNQGIVDPASNLHYDNMLFAQIDAVYAALASLGYKKLLLHISETGWPSKGDEDEAGATPENAKKYN 283 (407)
Q Consensus 204 ~~p~~i~l~yAlf~~~~~v~d~~~~~~y~nl~daqvDav~~Al~k~g~~~~~VvVtETGWPS~G~~~~~~As~~Na~~y~ 283 (407)
.| + ++.+...|++.+--+++|+|||.+-|..+ +++.|+.+.
T Consensus 165 -~~--------------------------~-----~~~~~~~l~~~~~~g~pi~iTE~dv~~~~-------~~~~qA~~~ 205 (254)
T smart00633 165 -SP--------------------------N-----IAEIRAALDRFASLGLEIQITELDISGYP-------NPQAQAADY 205 (254)
T ss_pred -CC--------------------------C-----HHHHHHHHHHHHHcCCceEEEEeecCCCC-------cHHHHHHHH
Confidence 00 0 11122333333333689999999988753 347889999
Q ss_pred HHHHHHHhccCCCCCCCCCCccEEEEEeecC-CCCCCCCCCCceeeecCCCCeeee
Q 015411 284 GNLIKLISSKKGTPMRPNCDLNIYVFALFNE-NLKPGPTSERNYGLFKPDGSPAYS 338 (407)
Q Consensus 284 ~~li~~~~~~~GTP~rp~~~~~~y~F~~FDE-~wK~G~~~Er~wGlf~~d~~~ky~ 338 (407)
+++++.+.+. | . ...+++..+.|. .|.++ .+-|||+.|++||-.
T Consensus 206 ~~~l~~~~~~---p---~-v~gi~~Wg~~d~~~W~~~----~~~~L~d~~~~~kpa 250 (254)
T smart00633 206 EEVFKACLAH---P---A-VTGVTVWGVTDKYSWLDG----GAPLLFDANYQPKPA 250 (254)
T ss_pred HHHHHHHHcC---C---C-eeEEEEeCCccCCcccCC----CCceeECCCCCCChh
Confidence 9999988753 2 1 234556666653 45543 477999999988854
No 9
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.96 E-value=0.031 Score=53.91 Aligned_cols=211 Identities=18% Similarity=0.170 Sum_probs=109.7
Q ss_pred cCCCEEEeccCChHHHHHHHhcCCeEEEEecccccccCCCHHHHHHHHHHHhhhhCCCceEEEEEecccccccC--CCCc
Q 015411 47 IGATRVKLYDADPKVLKAFANTGVEFTVSLGNEYLAKMRDPDCAKAWIKSNVQAYLPATKITCITVGNEVLTFN--DTSL 124 (407)
Q Consensus 47 ~gi~~VRlY~~d~~vL~A~a~tgi~v~lGv~n~~l~~~a~~~~A~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~--~~s~ 124 (407)
.+++-.=-|++.+.-. ....+++.+=.+|...-.. ..|+ ++|+.. ...++.|..=||.=... +.+
T Consensus 18 ~~~sW~YnW~~~~~~~--~~~~~~efvPmlwg~~~~~-------~~~~-~~v~~~--~~~~~~ll~fNEPD~~~qsn~~- 84 (239)
T PF11790_consen 18 SNVSWYYNWGSSPSGS--LDSAGLEFVPMLWGPGSDD-------DDWL-ANVQNA--HPGSKHLLGFNEPDLPGQSNMS- 84 (239)
T ss_pred CCcEEEeCCCCCCCCC--CCCCceeEeecccCCCCCc-------hHHH-HHHHhh--ccCccceeeecCCCCCCCCCCC-
Confidence 3455554444443211 1112267777777543211 1222 233332 34688999999986543 233
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCcccccchhhhhh--hhhhhhhhcCCCeeeecCCCccc
Q 015411 125 SGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCIT--PILDFHVKTASPFLINAYPYFAY 202 (407)
Q Consensus 125 ~~~Ll~am~~v~~aL~~~gl~~~I~VsTa~~~~vl~~s~pPS~g~F~~~l~~~l~--~~ldfL~~~~sp~~vNiyPyf~~ 202 (407)
+++.+...+++.+.|+. ..+++..+..-.. +..+|+...+-+++..... --+|| +.+|+|
T Consensus 85 p~~aa~~w~~~~~~~~~----~~~~l~sPa~~~~--~~~~~~g~~Wl~~F~~~~~~~~~~D~---------iavH~Y--- 146 (239)
T PF11790_consen 85 PEEAAALWKQYMNPLRS----PGVKLGSPAVAFT--NGGTPGGLDWLSQFLSACARGCRVDF---------IAVHWY--- 146 (239)
T ss_pred HHHHHHHHHHHHhHhhc----CCcEEECCeeccc--CCCCCCccHHHHHHHHhcccCCCccE---------EEEecC---
Confidence 67777777777777664 2466665543100 0001111112111111110 13344 444444
Q ss_pred cCCCCccCcccccccCCCCcccCCCcchhhhHHHHHHHHHHHHHHHcCCCCccEEEeeeccCCCCCCCCCCCCHHHHHHH
Q 015411 203 KGSPKQVSLDFVLFQPNQGIVDPASNLHYDNMLFAQIDAVYAALASLGYKKLLLHISETGWPSKGDEDEAGATPENAKKY 282 (407)
Q Consensus 203 ~~~p~~i~l~yAlf~~~~~v~d~~~~~~y~nl~daqvDav~~Al~k~g~~~~~VvVtETGWPS~G~~~~~~As~~Na~~y 282 (407)
..++ .-|...|+.++ ++.| +||+|||.|+...+ ...+.++++.|
T Consensus 147 ~~~~--------------------------~~~~~~i~~~~---~~~~---kPIWITEf~~~~~~----~~~~~~~~~~f 190 (239)
T PF11790_consen 147 GGDA--------------------------DDFKDYIDDLH---NRYG---KPIWITEFGCWNGG----SQGSDEQQASF 190 (239)
T ss_pred CcCH--------------------------HHHHHHHHHHH---HHhC---CCEEEEeecccCCC----CCCCHHHHHHH
Confidence 1100 11223344443 3333 89999999987722 35788999999
Q ss_pred HHHHHHHHhccCCCCCCCCCCccEEEEEeecCCCCCCCCCCCceeeecCCCCe
Q 015411 283 NGNLIKLISSKKGTPMRPNCDLNIYVFALFNENLKPGPTSERNYGLFKPDGSP 335 (407)
Q Consensus 283 ~~~li~~~~~~~GTP~rp~~~~~~y~F~~FDE~wK~G~~~Er~wGlf~~d~~~ 335 (407)
++..+..+.+. +. .-.+++|. |...+. ....+-.|++.||++
T Consensus 191 l~~~~~~ld~~------~~-VeryawF~-~~~~~~---~~~~~~~L~~~~G~l 232 (239)
T PF11790_consen 191 LRQALPWLDSQ------PY-VERYAWFG-FMNDGS---GVNPNSALLDADGSL 232 (239)
T ss_pred HHHHHHHHhcC------CC-eeEEEecc-cccccC---CCccccccccCCCCc
Confidence 99999999642 22 35788888 333322 245666677777744
No 10
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=96.77 E-value=0.15 Score=50.24 Aligned_cols=95 Identities=18% Similarity=0.163 Sum_probs=57.7
Q ss_pred ceeEEecCCCCC---CCCH---hHHHHHHhhcCCCEEEecc--CChHHHHHHHhcCCeEEEEeccccccc---------C
Q 015411 22 SIGINYGQIANN---LPTP---ENVIPLVKSIGATRVKLYD--ADPKVLKAFANTGVEFTVSLGNEYLAK---------M 84 (407)
Q Consensus 22 ~~GVnYg~~~~n---lps~---~~v~~llks~gi~~VRlY~--~d~~vL~A~a~tgi~v~lGv~n~~l~~---------~ 84 (407)
..|||+...... .++. .++++++|.+|++.||+.. .++..+.++-..||-|+.-++...... .
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~ 96 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYD 96 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCT
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccC
Confidence 469998875432 2333 3467889999999999963 457899999999999998887621110 0
Q ss_pred -CC---HHHHHHHHHHHhhhhCCCceEEEEEecccc
Q 015411 85 -RD---PDCAKAWIKSNVQAYLPATKITCITVGNEV 116 (407)
Q Consensus 85 -a~---~~~A~~wv~~~v~~~~p~~~I~~I~VGNEv 116 (407)
.+ .+.+...+++.|..+.---.|..-.+|||.
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 97 ADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 11 233445566777665422247788899999
No 11
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.21 E-value=0.082 Score=55.69 Aligned_cols=116 Identities=16% Similarity=0.150 Sum_probs=65.8
Q ss_pred HhHHHHHHhhcCCCEEEec--------c-----CC-------hHHHHHHHhcCCeEEEEecccccccC-------CCHHH
Q 015411 37 PENVIPLVKSIGATRVKLY--------D-----AD-------PKVLKAFANTGVEFTVSLGNEYLAKM-------RDPDC 89 (407)
Q Consensus 37 ~~~v~~llks~gi~~VRlY--------~-----~d-------~~vL~A~a~tgi~v~lGv~n~~l~~~-------a~~~~ 89 (407)
-+++++|||++|++..|+= + .| .+++..+++.||+.+|.+.--+++.. .+++.
T Consensus 60 y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~~ 139 (455)
T PF00232_consen 60 YKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRET 139 (455)
T ss_dssp HHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTHH
T ss_pred hhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCHHH
Confidence 4789999999999999864 1 12 36889999999999999975544331 12322
Q ss_pred HHH---HHHHHhhhhCCCceEEEEEeccccccc-----CCC-------C------chhhHHHHHHHHHHHHHhCCCCCCe
Q 015411 90 AKA---WIKSNVQAYLPATKITCITVGNEVLTF-----NDT-------S------LSGCLLPAMESVHTALVNLGLDKQV 148 (407)
Q Consensus 90 A~~---wv~~~v~~~~p~~~I~~I~VGNEvl~~-----~~~-------s------~~~~Ll~am~~v~~aL~~~gl~~~I 148 (407)
+.. -.+.-++.+ .++|+..+.=||...- ... + ....++-|-..+.+++++..- +.
T Consensus 140 ~~~F~~Ya~~~~~~~--gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~--~~ 215 (455)
T PF00232_consen 140 VDWFARYAEFVFERF--GDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYP--DG 215 (455)
T ss_dssp HHHHHHHHHHHHHHH--TTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTC--TS
T ss_pred HHHHHHHHHHHHHHh--CCCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhccc--ce
Confidence 211 111222333 3578888888998641 000 0 023355555556666666664 34
Q ss_pred EEeeeeec
Q 015411 149 SVTTAHSL 156 (407)
Q Consensus 149 ~VsTa~~~ 156 (407)
+|+.+++.
T Consensus 216 ~IGi~~~~ 223 (455)
T PF00232_consen 216 KIGIALNF 223 (455)
T ss_dssp EEEEEEEE
T ss_pred EEeccccc
Confidence 56655543
No 12
>TIGR03356 BGL beta-galactosidase.
Probab=95.52 E-value=1.7 Score=45.67 Aligned_cols=79 Identities=18% Similarity=0.229 Sum_probs=49.5
Q ss_pred HhHHHHHHhhcCCCEEEec-------c-----CC-------hHHHHHHHhcCCeEEEEeccccccc-------CCCHHHH
Q 015411 37 PENVIPLVKSIGATRVKLY-------D-----AD-------PKVLKAFANTGVEFTVSLGNEYLAK-------MRDPDCA 90 (407)
Q Consensus 37 ~~~v~~llks~gi~~VRlY-------~-----~d-------~~vL~A~a~tgi~v~lGv~n~~l~~-------~a~~~~A 90 (407)
-++++++|+++|++.+|+= - .| .++|..+.+.||+++|.+.--+++. ..+++..
T Consensus 56 y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~gGw~~~~~~ 135 (427)
T TIGR03356 56 YEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDRGGWLNRDTA 135 (427)
T ss_pred HHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhcCCCCChHHH
Confidence 4789999999999999862 1 12 3688999999999999995433322 2233222
Q ss_pred ---HHHHHHHhhhhCCCceEEEEEeccccc
Q 015411 91 ---KAWIKSNVQAYLPATKITCITVGNEVL 117 (407)
Q Consensus 91 ---~~wv~~~v~~~~p~~~I~~I~VGNEvl 117 (407)
....+.-+.. +. ++|+....=||..
T Consensus 136 ~~f~~ya~~~~~~-~~-d~v~~w~t~NEp~ 163 (427)
T TIGR03356 136 EWFAEYAAVVAER-LG-DRVKHWITLNEPW 163 (427)
T ss_pred HHHHHHHHHHHHH-hC-CcCCEEEEecCcc
Confidence 2222222333 33 3677666667764
No 13
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=90.05 E-value=2.8 Score=42.97 Aligned_cols=134 Identities=16% Similarity=0.197 Sum_probs=76.6
Q ss_pred CCCEEEeccC-ChHHHHHHHhcCCeEEEEecccccccCCCHHHHHHHHHHHhhhhCCCceEEEEEecccccccCCCCchh
Q 015411 48 GATRVKLYDA-DPKVLKAFANTGVEFTVSLGNEYLAKMRDPDCAKAWIKSNVQAYLPATKITCITVGNEVLTFNDTSLSG 126 (407)
Q Consensus 48 gi~~VRlY~~-d~~vL~A~a~tgi~v~lGv~n~~l~~~a~~~~A~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~s~~~ 126 (407)
.+++|-+|+. +++++..+++.|++|++..-.. .+.+.++..-..++++ +..++..-...+|-+==|-....+.....
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l~~~~~R~~fi~s-iv~~~~~~gfDGIdIDwE~p~~~~~~d~~ 132 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQISNPTYRTQWIQQ-KVELAKSQFMDGINIDIEQPITKGSPEYY 132 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHcCCHHHHHHHHHH-HHHHHHHhCCCeEEEcccCCCCCCcchHH
Confidence 4678888854 6899999999999999864322 2234455444445443 33333222455665544433221122246
Q ss_pred hHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCcccc-cchhhhhhhhhhhhhhcCCCeeeecCCCc
Q 015411 127 CLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFR-KDLVDCITPILDFHVKTASPFLINAYPYF 200 (407)
Q Consensus 127 ~Ll~am~~v~~aL~~~gl~~~I~VsTa~~~~vl~~s~pPS~g~F~-~~l~~~l~~~ldfL~~~~sp~~vNiyPyf 200 (407)
.+..-|+++|++|++.+..-. +|.+..+ .|+....+ -| .+.|.+.+|| +.+-.|=|+
T Consensus 133 ~~t~llkelr~~l~~~~~~~~--Lsvav~~-------~p~~~~~~~yd-~~~l~~~vD~-------v~lMtYD~h 190 (358)
T cd02875 133 ALTELVKETTKAFKKENPGYQ--ISFDVAW-------SPSCIDKRCYD-YTGIADASDF-------LVVMDYDEQ 190 (358)
T ss_pred HHHHHHHHHHHHHhhcCCCcE--EEEEEec-------CcccccccccC-HHHHHhhCCE-------eeEEeeccc
Confidence 788999999999998764323 4433321 11111111 12 2467888999 677777654
No 14
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=83.88 E-value=8.5 Score=39.31 Aligned_cols=82 Identities=17% Similarity=0.206 Sum_probs=53.1
Q ss_pred HhHHHHHHhhcCCCEEEeccCC----------------hHHHHHHHhcCCeEEEEecccccc--------c---------
Q 015411 37 PENVIPLVKSIGATRVKLYDAD----------------PKVLKAFANTGVEFTVSLGNEYLA--------K--------- 83 (407)
Q Consensus 37 ~~~v~~llks~gi~~VRlY~~d----------------~~vL~A~a~tgi~v~lGv~n~~l~--------~--------- 83 (407)
-+++++++|..|++.|||-... ..+|..+++.||+|+|+++....+ .
T Consensus 12 ~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~ 91 (374)
T PF02449_consen 12 WEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGR 91 (374)
T ss_dssp HHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTS
T ss_pred HHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCC
Confidence 4678999999999999974321 358888899999999999643111 0
Q ss_pred -----------CCC---HHHHHHHHHHHhhhhCCCceEEEEEecccccc
Q 015411 84 -----------MRD---PDCAKAWIKSNVQAYLPATKITCITVGNEVLT 118 (407)
Q Consensus 84 -----------~a~---~~~A~~wv~~~v~~~~p~~~I~~I~VGNEvl~ 118 (407)
..+ .+.+...+++-+..|-..-.|.++-|.||.-.
T Consensus 92 ~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 92 RRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp BEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred cCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 011 12334445544555544456999999999865
No 15
>PRK09936 hypothetical protein; Provisional
Probab=81.08 E-value=34 Score=34.45 Aligned_cols=61 Identities=25% Similarity=0.304 Sum_probs=44.2
Q ss_pred cCceeEEecCCCCC-CCCHhH---HHHHHhhcCCCEEEe----c-cCC--------hHHHHHHHhcCCeEEEEecccc
Q 015411 20 GTSIGINYGQIANN-LPTPEN---VIPLVKSIGATRVKL----Y-DAD--------PKVLKAFANTGVEFTVSLGNEY 80 (407)
Q Consensus 20 ~~~~GVnYg~~~~n-lps~~~---v~~llks~gi~~VRl----Y-~~d--------~~vL~A~a~tgi~v~lGv~n~~ 80 (407)
.+..|+=|-|...| --++++ ..+.++..|++.+=+ | ++| .+.|+++...||+|.||++-|.
T Consensus 19 ~a~~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~Dp 96 (296)
T PRK09936 19 QAMKGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYADP 96 (296)
T ss_pred hccccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCCh
Confidence 34788889998766 345544 566777789876543 2 223 4788899999999999999863
No 16
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=78.97 E-value=9.6 Score=34.88 Aligned_cols=84 Identities=17% Similarity=0.247 Sum_probs=46.5
Q ss_pred HHHHHHHhc--CCeEEEEeccccccc---C-CCHHHHHHHHHHHhhhhCCCceEEEEEecccccccCCCCchhhHHHHHH
Q 015411 60 KVLKAFANT--GVEFTVSLGNEYLAK---M-RDPDCAKAWIKSNVQAYLPATKITCITVGNEVLTFNDTSLSGCLLPAME 133 (407)
Q Consensus 60 ~vL~A~a~t--gi~v~lGv~n~~l~~---~-a~~~~A~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~s~~~~Ll~am~ 133 (407)
.-++.+++. |+||++.+....... + .+++..++ +.+++..+.....+.+|-+==|-....+......++..|+
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~-f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~ 131 (210)
T cd00598 53 GALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAA-FANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLR 131 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHH-HHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHH
Confidence 345566654 999999998643322 2 24433333 2333433333334555555334332211011478999999
Q ss_pred HHHHHHHhCCC
Q 015411 134 SVHTALVNLGL 144 (407)
Q Consensus 134 ~v~~aL~~~gl 144 (407)
.+|++|.+.++
T Consensus 132 ~lr~~l~~~~~ 142 (210)
T cd00598 132 ELRSALGAANY 142 (210)
T ss_pred HHHHHhcccCc
Confidence 99999987654
No 17
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=77.65 E-value=7.5 Score=38.54 Aligned_cols=82 Identities=13% Similarity=0.158 Sum_probs=49.7
Q ss_pred hHHHHHHHhcCCeEEEEecccc--------cccC-CCHHHHHHHHHHHhhhhCCCceEEEEEecccccccCCCCchhhHH
Q 015411 59 PKVLKAFANTGVEFTVSLGNEY--------LAKM-RDPDCAKAWIKSNVQAYLPATKITCITVGNEVLTFNDTSLSGCLL 129 (407)
Q Consensus 59 ~~vL~A~a~tgi~v~lGv~n~~--------l~~~-a~~~~A~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~s~~~~Ll 129 (407)
++++.++++.++||++.|.+.. ...+ +++. ++.-..+++..++..-.+.+|-+-=|.+... .....+
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~-~r~~fi~~iv~~l~~~~~DGidiDwE~~~~~---d~~~~~ 123 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPE-ARQRLINNILALAKKYGYDGVNIDFENVPPE---DREAYT 123 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHH-HHHHHHHHHHHHHHHhCCCcEEEecccCCHH---HHHHHH
Confidence 6788888888999999887642 1122 2333 2222333444333222455666544554322 246688
Q ss_pred HHHHHHHHHHHhCCC
Q 015411 130 PAMESVHTALVNLGL 144 (407)
Q Consensus 130 ~am~~v~~aL~~~gl 144 (407)
..++.+|.+|++.|+
T Consensus 124 ~fl~~lr~~l~~~~~ 138 (313)
T cd02874 124 QFLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHHhhhcCc
Confidence 999999999987664
No 18
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=74.00 E-value=1.1e+02 Score=31.20 Aligned_cols=129 Identities=14% Similarity=0.149 Sum_probs=79.6
Q ss_pred cccCCCCCcccccchhhhhhhhhhhhhhcCCCeeeecCCCc--cccC-------CCCccCcccccccCCCCcccCCCcch
Q 015411 160 GSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYF--AYKG-------SPKQVSLDFVLFQPNQGIVDPASNLH 230 (407)
Q Consensus 160 ~~s~pPS~g~F~~~l~~~l~~~ldfL~~~~sp~~vNiyPyf--~~~~-------~p~~i~l~yAlf~~~~~v~d~~~~~~ 230 (407)
...+|...+.+.++..+.++.++|.+.+.|+.+.+.+.--- +... .|..++... .......-|.-.
T Consensus 61 ~~~~~~~~~l~~d~~i~~~~~l~~~vh~~g~~~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~-----~~~~~~~mt~~e 135 (343)
T cd04734 61 DSPAFGNLNASDDEIIPGFRRLAEAVHAHGAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPR-----HRAVPKAMEEED 135 (343)
T ss_pred ccCCCCccccCCHHHHHHHHHHHHHHHhcCCeEEEeccCCCcCcCcccCCCcccCCCCCCCCC-----CCCCCCcCCHHH
Confidence 33456666778888778999999999999999999876321 1100 011111000 000001112222
Q ss_pred hhhHHHHHHHHHHHHHHHcCCCCccEEEeeec-------cCCC-CCCCCCCCCHHHHHHHHHHHHHHHhccCC
Q 015411 231 YDNMLFAQIDAVYAALASLGYKKLLLHISETG-------WPSK-GDEDEAGATPENAKKYNGNLIKLISSKKG 295 (407)
Q Consensus 231 y~nl~daqvDav~~Al~k~g~~~~~VvVtETG-------WPS~-G~~~~~~As~~Na~~y~~~li~~~~~~~G 295 (407)
-..+.+..++|..-|. ++|+..++|+-.- | .|.. -..++.+.+++|-.+|...+++.+++..|
T Consensus 136 I~~ii~~f~~AA~ra~-~aGfDgVeih~ah-GyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg 206 (343)
T cd04734 136 IEEIIAAFADAARRCQ-AGGLDGVELQAAH-GHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVG 206 (343)
T ss_pred HHHHHHHHHHHHHHHH-HcCCCEEEEcccc-chHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcC
Confidence 3455666666666664 4899999999765 5 4532 22233568899999999999999987655
No 19
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=72.22 E-value=1.1e+02 Score=32.63 Aligned_cols=183 Identities=15% Similarity=0.166 Sum_probs=78.7
Q ss_pred EEEeccccccc--CCCCchhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCcccccchhhhhhhhhhhhh
Q 015411 109 CITVGNEVLTF--NDTSLSGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHV 186 (407)
Q Consensus 109 ~I~VGNEvl~~--~~~s~~~~Ll~am~~v~~aL~~~gl~~~I~VsTa~~~~vl~~s~pPS~g~F~~~l~~~l~~~ldfL~ 186 (407)
..=|=||.=.. +......+-....+.+.++|++.. ..++|+-+-.. + +.. ..+...++|..
T Consensus 158 ~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~--p~~~vGGp~~~--~--~~~-----------~~~~~~l~~~~ 220 (486)
T PF01229_consen 158 YFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVD--PELKVGGPAFA--W--AYD-----------EWCEDFLEFCK 220 (486)
T ss_dssp EEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH---TTSEEEEEEEE--T--T-T-----------HHHHHHHHHHH
T ss_pred eEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhC--CCCcccCcccc--c--cHH-----------HHHHHHHHHHh
Confidence 34468885332 111124567777788888888765 35788876110 0 000 12233334443
Q ss_pred hcCCC---eeeecCCCccccCCCCccCcccccccCCCCcccCCCcchhhhHHHHHHHHHHHHHHHcCCCCccEEEeeecc
Q 015411 187 KTASP---FLINAYPYFAYKGSPKQVSLDFVLFQPNQGIVDPASNLHYDNMLFAQIDAVYAALASLGYKKLLLHISETGW 263 (407)
Q Consensus 187 ~~~sp---~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~v~d~~~~~~y~nl~daqvDav~~Al~k~g~~~~~VvVtETGW 263 (407)
+.+.| +..|.||+-........ .+ .... ....+++ ++--+...+...+.+++++.+|| |
T Consensus 221 ~~~~~~DfiS~H~y~~~~~~~~~~~---~~-------~~~~-----~~~~~~~-~~~~~~~~~~~e~~p~~~~~~tE--~ 282 (486)
T PF01229_consen 221 GNNCPLDFISFHSYGTDSAEDINEN---MY-------ERIE-----DSRRLFP-ELKETRPIINDEADPNLPLYITE--W 282 (486)
T ss_dssp HCT---SEEEEEEE-BESESE-SS----EE-------EEB-------HHHHHH-HHHHHHHHHHTSSSTT--EEEEE--E
T ss_pred cCCCCCCEEEEEecccccccccchh---HH-------hhhh-----hHHHHHH-HHHHHHHHHhhccCCCCceeecc--c
Confidence 33333 57787875322111100 00 0000 0111222 22233334555678899999999 8
Q ss_pred CCCCCCCC-CCCCHHHHHHHHHHHHHHHhccCCCCCCCCCCccEEEE----EeecCCCCCCCCCCCceeeecCCCCee
Q 015411 264 PSKGDEDE-AGATPENAKKYNGNLIKLISSKKGTPMRPNCDLNIYVF----ALFNENLKPGPTSERNYGLFKPDGSPA 336 (407)
Q Consensus 264 PS~G~~~~-~~As~~Na~~y~~~li~~~~~~~GTP~rp~~~~~~y~F----~~FDE~wK~G~~~Er~wGlf~~d~~~k 336 (407)
.+.-.... -.-|.-+|+-..++++..... .++.|-+ ..|.|+--+...+-.-|||++.+|-+|
T Consensus 283 n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~----------~l~~~sywt~sD~Fee~~~~~~pf~ggfGLlt~~gI~K 350 (486)
T PF01229_consen 283 NASISPRNPQHDTCFKAAYIAKNLLSNDGA----------FLDSFSYWTFSDRFEENGTPRKPFHGGFGLLTKLGIPK 350 (486)
T ss_dssp ES-SSTT-GGGGSHHHHHHHHH-HHHHGGG----------T-SEEEES-SBS---TTSS-SSSSSS-S-SEECCCEE-
T ss_pred ccccCCCcchhccccchhhHHHHHHHhhhh----------hhhhhhccchhhhhhccCCCCCceecchhhhhccCCCc
Confidence 77654322 234555665555556555421 1333221 123333222223556699999998554
No 20
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=69.80 E-value=4.9 Score=36.85 Aligned_cols=38 Identities=16% Similarity=0.402 Sum_probs=27.3
Q ss_pred HHHHHhhcCCCEEEeccCChHHHHHHHhcCCeEEEEec
Q 015411 40 VIPLVKSIGATRVKLYDADPKVLKAFANTGVEFTVSLG 77 (407)
Q Consensus 40 v~~llks~gi~~VRlY~~d~~vL~A~a~tgi~v~lGv~ 77 (407)
-+++|+.+|+++||+.+.+|.-+.++.+.||+|.=-+|
T Consensus 131 gaqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 131 GAQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HHHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE-
T ss_pred HHHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEec
Confidence 46899999999999999999999999999999874443
No 21
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=69.49 E-value=68 Score=33.25 Aligned_cols=61 Identities=15% Similarity=0.231 Sum_probs=34.6
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCcccccchhhhhhhhhhhhhhcCCCeeeecCCCccccC
Q 015411 125 SGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFAYKG 204 (407)
Q Consensus 125 ~~~Ll~am~~v~~aL~~~gl~~~I~VsTa~~~~vl~~s~pPS~g~F~~~l~~~l~~~ldfL~~~~sp~~vNiyPyf~~~~ 204 (407)
.+....+++.+|+.. . .+.+++..-+ .+| | |-.+.+.+.++|+.+.+ +-.+++|||--+-.
T Consensus 272 ~~~~~~~v~~l~~~~--~----gi~i~~~~Iv-----G~P---g----ET~ed~~~tl~~i~~~~-~~~~~~~~~sp~pG 332 (414)
T TIGR01579 272 RDDFLKLVNKLRSVR--P----DYAFGTDIIV-----GFP---G----ESEEDFQETLRMVKEIE-FSHLHIFPYSARPG 332 (414)
T ss_pred HHHHHHHHHHHHHhC--C----CCeeeeeEEE-----ECC---C----CCHHHHHHHHHHHHhCC-CCEEEeeecCCCCC
Confidence 567777777777642 1 2445554321 234 1 11245667788887765 34678887765443
No 22
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=68.67 E-value=23 Score=35.77 Aligned_cols=114 Identities=17% Similarity=0.263 Sum_probs=57.7
Q ss_pred cCCeEEEEecc--cc---cccCC-CHHHHHHHHHHHhhhhCCCceEEEEEeccccccc--CCCCchhhHHHHHHHHHHHH
Q 015411 68 TGVEFTVSLGN--EY---LAKMR-DPDCAKAWIKSNVQAYLPATKITCITVGNEVLTF--NDTSLSGCLLPAMESVHTAL 139 (407)
Q Consensus 68 tgi~v~lGv~n--~~---l~~~a-~~~~A~~wv~~~v~~~~p~~~I~~I~VGNEvl~~--~~~s~~~~Ll~am~~v~~aL 139 (407)
.++||++.|.. .. ...+. ++......+ +++..++..-.+.+|-+==|-... ........++..|+.+|++|
T Consensus 69 p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi-~~iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~l 147 (362)
T cd02872 69 PNLKTLLAIGGWNFGSAKFSAMAASPENRKTFI-KSAIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREAF 147 (362)
T ss_pred CCceEEEEEcCCCCCcchhHHHhCCHHHHHHHH-HHHHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 58999988853 21 22232 443333333 333333322234555543332221 11122467899999999999
Q ss_pred HhCCCCCCeEEeeeeec--ccccccCCCCCcccccchhhhhhhhhhhhhhcCCCeeeecCCCcc
Q 015411 140 VNLGLDKQVSVTTAHSL--GVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFA 201 (407)
Q Consensus 140 ~~~gl~~~I~VsTa~~~--~vl~~s~pPS~g~F~~~l~~~l~~~ldfL~~~~sp~~vNiyPyf~ 201 (407)
++.+- ...++.+... ..+...| + .+.|.+.+|| +.+-.|-|..
T Consensus 148 ~~~~~--~~~ls~av~~~~~~~~~~~---------d-~~~l~~~vD~-------v~vmtYD~~~ 192 (362)
T cd02872 148 EPEAP--RLLLTAAVSAGKETIDAAY---------D-IPEISKYLDF-------INVMTYDFHG 192 (362)
T ss_pred HhhCc--CeEEEEEecCChHHHhhcC---------C-HHHHhhhcce-------EEEecccCCC
Confidence 98731 1234433321 1111111 1 2467788999 7777777654
No 23
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=68.47 E-value=54 Score=34.22 Aligned_cols=57 Identities=21% Similarity=0.314 Sum_probs=33.7
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCcccccchhhhhhhhhhhhhhcCCCeeeecCCCcc
Q 015411 125 SGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFA 201 (407)
Q Consensus 125 ~~~Ll~am~~v~~aL~~~gl~~~I~VsTa~~~~vl~~s~pPS~g~F~~~l~~~l~~~ldfL~~~~sp~~vNiyPyf~ 201 (407)
.+.++..|+.+|++|++.++. +.++.+.... +...| | .+.|.+.+|| +.+-.|=|+.
T Consensus 168 ~~nf~~Ll~elr~~l~~~~~~--ls~av~~~~~--------~~~~~--d-~~~l~~~vD~-------inlMtYD~~g 224 (413)
T cd02873 168 KEQFTALVRELKNALRPDGLL--LTLTVLPHVN--------STWYF--D-VPAIANNVDF-------VNLATFDFLT 224 (413)
T ss_pred HHHHHHHHHHHHHHhcccCcE--EEEEecCCch--------hcccc--C-HHHHhhcCCE-------EEEEEecccC
Confidence 466888999999999877652 3332211100 00011 2 2567888999 6677776654
No 24
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=68.10 E-value=18 Score=27.27 Aligned_cols=45 Identities=20% Similarity=0.355 Sum_probs=37.1
Q ss_pred CCCHhHHHHHHhhcCCCEEEeccCC-----hHHHHHHHhcCCeEEEEecc
Q 015411 34 LPTPENVIPLVKSIGATRVKLYDAD-----PKVLKAFANTGVEFTVSLGN 78 (407)
Q Consensus 34 lps~~~v~~llks~gi~~VRlY~~d-----~~vL~A~a~tgi~v~lGv~n 78 (407)
.-++++.++..+.+|++.|=+=|-+ +...+.+++.|++++.|+..
T Consensus 14 ~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 14 ALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEE
Confidence 3468999999999999999888777 45667777899999999864
No 25
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=67.59 E-value=26 Score=33.65 Aligned_cols=80 Identities=23% Similarity=0.248 Sum_probs=45.0
Q ss_pred HHHHHHHhcCCeEEEEeccccccc---C-CCHHHHHHHHHHHhhhhCCCceEEEEEecccccccCCCCchhhHHHHHHHH
Q 015411 60 KVLKAFANTGVEFTVSLGNEYLAK---M-RDPDCAKAWIKSNVQAYLPATKITCITVGNEVLTFNDTSLSGCLLPAMESV 135 (407)
Q Consensus 60 ~vL~A~a~tgi~v~lGv~n~~l~~---~-a~~~~A~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~s~~~~Ll~am~~v 135 (407)
..++++++.|+||++.|....... + +++...+.++ +++..++....+.+|-+==|-... . .......++.+
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi-~~lv~~~~~~~~DGIdiDwE~~~~---~-~~~~~~fv~~L 124 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALV-DKIINYVVSYNLDGIDVDLEGPDV---T-FGDYLVFIRAL 124 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHH-HHHHHHHHHhCCCceeEEeeccCc---c-HhHHHHHHHHH
Confidence 456677778999999887643221 2 2444333333 333333222234455544344321 1 35677889999
Q ss_pred HHHHHhCCC
Q 015411 136 HTALVNLGL 144 (407)
Q Consensus 136 ~~aL~~~gl 144 (407)
|++|++.|+
T Consensus 125 r~~l~~~~~ 133 (253)
T cd06545 125 YAALKKEGK 133 (253)
T ss_pred HHHHhhcCc
Confidence 999987664
No 26
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=65.01 E-value=26 Score=35.71 Aligned_cols=81 Identities=20% Similarity=0.250 Sum_probs=36.0
Q ss_pred HHHHHHhcCCeEEEEeccccccc-CCCHHHHHHHHHHHhhhhC-----CCceEEEEEecccccccC---CCCchhhHHHH
Q 015411 61 VLKAFANTGVEFTVSLGNEYLAK-MRDPDCAKAWIKSNVQAYL-----PATKITCITVGNEVLTFN---DTSLSGCLLPA 131 (407)
Q Consensus 61 vL~A~a~tgi~v~lGv~n~~l~~-~a~~~~A~~wv~~~v~~~~-----p~~~I~~I~VGNEvl~~~---~~s~~~~Ll~a 131 (407)
+.+=+..+|++|+.|+..-.-.. +.+....-.|--+|.+..+ .+-+|.+-=.|||.-..+ ..+ +.++..-
T Consensus 114 l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~-a~qyakD 192 (319)
T PF03662_consen 114 LNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVS-AEQYAKD 192 (319)
T ss_dssp HHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT---HHHHHHH
T ss_pred HHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccC-HHHHHHH
Confidence 33445579999999986321000 0011223567777765543 123577888999975432 122 6778888
Q ss_pred HHHHHHHHHhC
Q 015411 132 MESVHTALVNL 142 (407)
Q Consensus 132 m~~v~~aL~~~ 142 (407)
...+|+.|+..
T Consensus 193 ~~~Lr~il~~i 203 (319)
T PF03662_consen 193 FIQLRKILNEI 203 (319)
T ss_dssp H---HHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888877763
No 27
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=61.43 E-value=2.2e+02 Score=29.96 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=31.7
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCcccccchhhhhhhhhhhhhhcCCCeeeecCCCc
Q 015411 125 SGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYF 200 (407)
Q Consensus 125 ~~~Ll~am~~v~~aL~~~gl~~~I~VsTa~~~~vl~~s~pPS~g~F~~~l~~~l~~~ldfL~~~~sp~~vNiyPyf 200 (407)
.++++.+++.+|++. . .+.+++..-. .+| | +-.+.+.+.++|+.+.+ +-.+++|+|-
T Consensus 271 ~~~~~~~v~~lr~~~----~--~i~i~~d~Iv-----G~P---g----Et~ed~~~tl~~i~~l~-~~~i~~f~ys 327 (440)
T PRK14334 271 REKYLERIAEIREAL----P--DVVLSTDIIV-----GFP---G----ETEEDFQETLSLYDEVG-YDSAYMFIYS 327 (440)
T ss_pred HHHHHHHHHHHHHhC----C--CcEEEEeEEE-----ECC---C----CCHHHHHHHHHHHHhcC-CCEeeeeEee
Confidence 567777877777652 2 3445554322 234 1 11234556778887765 3356777654
No 28
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.45 E-value=28 Score=36.06 Aligned_cols=43 Identities=16% Similarity=0.346 Sum_probs=30.4
Q ss_pred HcCCCCccEEEeeeccCCCCCCCC---CCCCHHHHHHHHHHHHHHHhcc
Q 015411 248 SLGYKKLLLHISETGWPSKGDEDE---AGATPENAKKYNGNLIKLISSK 293 (407)
Q Consensus 248 k~g~~~~~VvVtETGWPS~G~~~~---~~As~~Na~~y~~~li~~~~~~ 293 (407)
-.|.+..+|+.| |||.|.-.+ -..|...++--+.++++.+.+.
T Consensus 142 d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~ 187 (377)
T COG4782 142 DSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLATD 187 (377)
T ss_pred hcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHhC
Confidence 356777888887 999998643 3456666677777777777653
No 29
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=58.40 E-value=16 Score=34.13 Aligned_cols=33 Identities=18% Similarity=0.566 Sum_probs=30.3
Q ss_pred HHHHhhcCCCEEEeccCChHHHHHHHhcCCeEE
Q 015411 41 IPLVKSIGATRVKLYDADPKVLKAFANTGVEFT 73 (407)
Q Consensus 41 ~~llks~gi~~VRlY~~d~~vL~A~a~tgi~v~ 73 (407)
.++|+.+|+++||+.+..+.=+.++.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 689999999999999999877889999999987
No 30
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=58.01 E-value=16 Score=34.29 Aligned_cols=33 Identities=24% Similarity=0.626 Sum_probs=30.5
Q ss_pred HHHHhhcCCCEEEeccCChHHHHHHHhcCCeEE
Q 015411 41 IPLVKSIGATRVKLYDADPKVLKAFANTGVEFT 73 (407)
Q Consensus 41 ~~llks~gi~~VRlY~~d~~vL~A~a~tgi~v~ 73 (407)
+++|+.+||++||+.+..+.=+.++.+.|++|.
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~ 166 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIV 166 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 689999999999999999877889999999997
No 31
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=57.78 E-value=76 Score=37.33 Aligned_cols=96 Identities=18% Similarity=0.127 Sum_probs=60.4
Q ss_pred ceeEEecCCCCC---CCCH---hHHHHHHhhcCCCEEEecc--CChHHHHHHHhcCCeEEEEeccccc-----ccCC-CH
Q 015411 22 SIGINYGQIANN---LPTP---ENVIPLVKSIGATRVKLYD--ADPKVLKAFANTGVEFTVSLGNEYL-----AKMR-DP 87 (407)
Q Consensus 22 ~~GVnYg~~~~n---lps~---~~v~~llks~gi~~VRlY~--~d~~vL~A~a~tgi~v~lGv~n~~l-----~~~a-~~ 87 (407)
..|+|+-..... -.++ .++++++|.+|++.||+-. .++..++.+-..||-|+-=++.+.. ..+. ++
T Consensus 352 lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp 431 (1027)
T PRK09525 352 IRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDP 431 (1027)
T ss_pred EEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCH
Confidence 458887543221 2344 4477899999999999943 3578999999999999877654211 1111 22
Q ss_pred ---HHHHHHHHHHhhhhCCCceEEEEEeccccc
Q 015411 88 ---DCAKAWIKSNVQAYLPATKITCITVGNEVL 117 (407)
Q Consensus 88 ---~~A~~wv~~~v~~~~p~~~I~~I~VGNEvl 117 (407)
++..+.+++.|.+..---.|..-++|||.-
T Consensus 432 ~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 432 RWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 223344555565543223588899999974
No 32
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=57.61 E-value=40 Score=36.54 Aligned_cols=76 Identities=18% Similarity=0.288 Sum_probs=49.7
Q ss_pred cCCCCccEEEeeeccCCCCCCCC--C-----CCCHHHHHHHHHHHHHHHhccCCCCCCCCCCccEEEEEeecC-CCCCCC
Q 015411 249 LGYKKLLLHISETGWPSKGDEDE--A-----GATPENAKKYNGNLIKLISSKKGTPMRPNCDLNIYVFALFNE-NLKPGP 320 (407)
Q Consensus 249 ~g~~~~~VvVtETGWPS~G~~~~--~-----~As~~Na~~y~~~li~~~~~~~GTP~rp~~~~~~y~F~~FDE-~wK~G~ 320 (407)
-.+.+.+|.|+|-|-+...+..- . ..=.+..+.|++.+.+.+.. .|- ...-+|+.++-|- .|..|
T Consensus 403 ~~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~-dgv-----nv~GYf~WSLmDnfEw~~G- 475 (524)
T KOG0626|consen 403 DKYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKE-DGV-----NVKGYFVWSLLDNFEWLDG- 475 (524)
T ss_pred hhcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHh-cCC-----ceeeEEEeEcccchhhhcC-
Confidence 34789999999999988754321 1 12245566777777777653 221 1235888888873 45565
Q ss_pred CCCCceeeecCC
Q 015411 321 TSERNYGLFKPD 332 (407)
Q Consensus 321 ~~Er~wGlf~~d 332 (407)
..-.||||+.|
T Consensus 476 -y~~RFGlyyVD 486 (524)
T KOG0626|consen 476 -YKVRFGLYYVD 486 (524)
T ss_pred -cccccccEEEe
Confidence 56889999953
No 33
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=56.86 E-value=88 Score=31.14 Aligned_cols=127 Identities=13% Similarity=0.117 Sum_probs=61.3
Q ss_pred hHHHHHHHh--cCCeEE--E--Eecccc-cccCC-CHHHHHHHHHHHhhhhCCCceEEEEEecc-ccccc-CCCCchhhH
Q 015411 59 PKVLKAFAN--TGVEFT--V--SLGNEY-LAKMR-DPDCAKAWIKSNVQAYLPATKITCITVGN-EVLTF-NDTSLSGCL 128 (407)
Q Consensus 59 ~~vL~A~a~--tgi~v~--l--Gv~n~~-l~~~a-~~~~A~~wv~~~v~~~~p~~~I~~I~VGN-Evl~~-~~~s~~~~L 128 (407)
...+.++++ .++||+ + |=|... ...+. ++..-... .+++..+...-.+.+|-+=- |.... +.......+
T Consensus 54 ~~~~~~lk~~~~~lkvlp~i~~gg~~~~~f~~~~~~~~~R~~f-i~s~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~ 132 (318)
T cd02876 54 KGWIEEVRKANKNIKILPRVLFEGWSYQDLQSLLNDEQEREKL-IKLLVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKEL 132 (318)
T ss_pred hHHHHHHHhhCCCcEEEeEEEECCCCHHHHHHHHcCHHHHHHH-HHHHHHHHHHcCCCcEEEechhhhcccCCHHHHHHH
Confidence 344455554 479998 4 334432 23343 44433333 33444443333455554421 11111 111124678
Q ss_pred HHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCccccc-chhhhhhhhhhhhhhcCCCeeeecCCCcc
Q 015411 129 LPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRK-DLVDCITPILDFHVKTASPFLINAYPYFA 201 (407)
Q Consensus 129 l~am~~v~~aL~~~gl~~~I~VsTa~~~~vl~~s~pPS~g~F~~-~l~~~l~~~ldfL~~~~sp~~vNiyPyf~ 201 (407)
+..|+.+|++|.+.|+. +.++.+-.... .+....+.. | .+.|.+.+|| +.|-.|=|+.
T Consensus 133 ~~~l~el~~~l~~~~~~--l~~~v~~~~~~-----~~~~~~~~~~d-~~~l~~~vD~-------v~lMtYD~~~ 191 (318)
T cd02876 133 IQLVIHLGETLHSANLK--LILVIPPPREK-----GNQNGLFTRKD-FEKLAPHVDG-------FSLMTYDYSS 191 (318)
T ss_pred HHHHHHHHHHHhhcCCE--EEEEEcCcccc-----ccccccccccC-HHHHHhhccE-------EEEEeeccCC
Confidence 88999999999887652 33433211100 000111211 2 2567888999 6666776543
No 34
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=56.42 E-value=63 Score=34.87 Aligned_cols=186 Identities=17% Similarity=0.170 Sum_probs=100.6
Q ss_pred HHHHHHHhhhhCCCceEEEEEecccccccCCCCchhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCccc
Q 015411 91 KAWIKSNVQAYLPATKITCITVGNEVLTFNDTSLSGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAF 170 (407)
Q Consensus 91 ~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~s~~~~Ll~am~~v~~aL~~~gl~~~I~VsTa~~~~vl~~s~pPS~g~F 170 (407)
...+..-|.+|--...|.+-..-||.+.+.+.+ ...++...+.+.+-++..+=+.-|.|+-+-+ -|..--|+
T Consensus 123 kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s-~N~f~~w~~emy~yiK~ldd~hlvsvGD~~s--p~~~~~py----- 194 (587)
T COG3934 123 KKYVEDLVKPYKLDPTIAGWALRNEPLVEAPIS-VNNFWDWSGEMYAYIKWLDDGHLVSVGDPAS--PWPQYAPY----- 194 (587)
T ss_pred HHHHHHHhhhhccChHHHHHHhcCCccccccCC-hhHHHHHHHHHHHHhhccCCCCeeecCCcCC--cccccCCc-----
Confidence 445666677775555688888899988765555 7889999999999888776544344443322 23222232
Q ss_pred ccchhhhhhhhhhhhhhcCCCeeeecCCCccccCCCCccCcccccccCCCCcccCCCcchhhhHHHHHHHHHHHHHHHcC
Q 015411 171 RKDLVDCITPILDFHVKTASPFLINAYPYFAYKGSPKQVSLDFVLFQPNQGIVDPASNLHYDNMLFAQIDAVYAALASLG 250 (407)
Q Consensus 171 ~~~l~~~l~~~ldfL~~~~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~v~d~~~~~~y~nl~daqvDav~~Al~k~g 250 (407)
-.+-.+|| -.-|+||+|+.. |. ....+..+.| |-+.. ..+|
T Consensus 195 ------N~r~~vDy-------a~~hLY~hyd~s--l~-~r~s~~yg~~------------~l~i~-----------~~~g 235 (587)
T COG3934 195 ------NARFYVDY-------AANHLYRHYDTS--LV-SRVSTVYGKP------------YLDIP-----------TIMG 235 (587)
T ss_pred ------ccceeecc-------ccchhhhhccCC--hh-heeeeeecch------------hhccc-----------hhcc
Confidence 13345677 577999976532 20 0011111110 11110 1122
Q ss_pred CCCccEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCCCCCCCCCccEEEEEeecCCCC--CCC--CCCCce
Q 015411 251 YKKLLLHISETGWPSKGDEDEAGATPENAKKYNGNLIKLISSKKGTPMRPNCDLNIYVFALFNENLK--PGP--TSERNY 326 (407)
Q Consensus 251 ~~~~~VvVtETGWPS~G~~~~~~As~~Na~~y~~~li~~~~~~~GTP~rp~~~~~~y~F~~FDE~wK--~G~--~~Er~w 326 (407)
-+||+.-|-|-|++=..+ |.+.|.--. ..+....| ..--...|+=|-+--. +.. .-|-.|
T Consensus 236 --~~pV~leefGfsta~g~e-------~s~ayfiw~-~lal~~gg------dGaLiwclsdf~~gsdd~ey~w~p~el~f 299 (587)
T COG3934 236 --WQPVNLEEFGFSTAFGQE-------NSPAYFIWI-RLALDTGG------DGALIWCLSDFHLGSDDSEYTWGPMELEF 299 (587)
T ss_pred --cceeeccccCCccccccc-------ccchhhhhh-hhHHhhcC------CceEEEEecCCccCCCCCCCcccccccee
Confidence 379999999999964322 122221111 11221111 1123444544432111 111 258899
Q ss_pred eeecCCCCeeeee
Q 015411 327 GLFKPDGSPAYSL 339 (407)
Q Consensus 327 Glf~~d~~~ky~l 339 (407)
||.+.|+.+|+..
T Consensus 300 giIradgpek~~a 312 (587)
T COG3934 300 GIIRADGPEKIDA 312 (587)
T ss_pred eeecCCCchhhhH
Confidence 9999999999976
No 35
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=55.86 E-value=25 Score=37.46 Aligned_cols=46 Identities=13% Similarity=0.219 Sum_probs=36.2
Q ss_pred HhHHHHHHhhcCCCEEEe-------c--c---CC-------hHHHHHHHhcCCeEEEEecccccc
Q 015411 37 PENVIPLVKSIGATRVKL-------Y--D---AD-------PKVLKAFANTGVEFTVSLGNEYLA 82 (407)
Q Consensus 37 ~~~v~~llks~gi~~VRl-------Y--~---~d-------~~vL~A~a~tgi~v~lGv~n~~l~ 82 (407)
-+++++|||++|++.-|+ + + .| .+++.++.+.||+-+|.+.--+++
T Consensus 56 y~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP 120 (469)
T PRK13511 56 YPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTP 120 (469)
T ss_pred hHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCc
Confidence 478999999999888775 2 1 12 468999999999999999865544
No 36
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=54.58 E-value=2.4e+02 Score=28.35 Aligned_cols=132 Identities=14% Similarity=0.197 Sum_probs=79.1
Q ss_pred ccCCCCCcccccchhhhhhhhhhhhhhcCCCeeeecCCCccccCCCCccCc------------ccccccCCC-------C
Q 015411 161 SSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFAYKGSPKQVSL------------DFVLFQPNQ-------G 221 (407)
Q Consensus 161 ~s~pPS~g~F~~~l~~~l~~~ldfL~~~~sp~~vNiyPyf~~~~~p~~i~l------------~yAlf~~~~-------~ 221 (407)
..+|...+.+.++..+.++.+.|-+.+.|+.+++.++. .+.......+. ......|+. .
T Consensus 62 ~~~~~~~~~~~d~~~~~~~~l~~~vh~~G~~~~~QL~H--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~ 139 (336)
T cd02932 62 RITPGDLGLWNDEQIEALKRIVDFIHSQGAKIGIQLAH--AGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDEGWP 139 (336)
T ss_pred CCCCCceeecCHHHHHHHHHHHHHHHhcCCcEEEEccC--CCcCCCCCCCccccccccccccCCCceeCCCCCcCCCCCC
Confidence 34555556778888889999999999999999998653 11111100000 000011110 0
Q ss_pred cccCCCcchhhhHHHHHHHHHHHHHHHcCCCCccEEEeeec------cCCC-CCCCCCCCCHHHHHHHHHHHHHHHhccC
Q 015411 222 IVDPASNLHYDNMLFAQIDAVYAALASLGYKKLLLHISETG------WPSK-GDEDEAGATPENAKKYNGNLIKLISSKK 294 (407)
Q Consensus 222 v~d~~~~~~y~nl~daqvDav~~Al~k~g~~~~~VvVtETG------WPS~-G~~~~~~As~~Na~~y~~~li~~~~~~~ 294 (407)
....-+.-.-..+.+..+++...|.+ +|+..++|..+--. .|.. -..++-+.+.+|--+|...+++.+++..
T Consensus 140 ~p~~mt~~eI~~ii~~~~~aA~~a~~-aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~v 218 (336)
T cd02932 140 TPRELTREEIAEVVDAFVAAARRAVE-AGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVW 218 (336)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHc
Confidence 00111112234567777777776644 89999999987633 2522 2222346899999999999999998755
Q ss_pred C
Q 015411 295 G 295 (407)
Q Consensus 295 G 295 (407)
|
T Consensus 219 G 219 (336)
T cd02932 219 P 219 (336)
T ss_pred C
Confidence 4
No 37
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=53.44 E-value=2.9e+02 Score=28.97 Aligned_cols=100 Identities=19% Similarity=0.137 Sum_probs=52.7
Q ss_pred HHHHHHHhcCCeEEEEecccccc----------------cCC--CHHHHHHHHHHHhhhhC-CCceEEEEEecccccccC
Q 015411 60 KVLKAFANTGVEFTVSLGNEYLA----------------KMR--DPDCAKAWIKSNVQAYL-PATKITCITVGNEVLTFN 120 (407)
Q Consensus 60 ~vL~A~a~tgi~v~lGv~n~~l~----------------~~a--~~~~A~~wv~~~v~~~~-p~~~I~~I~VGNEvl~~~ 120 (407)
..|+++++.|+..+++.-|+..- .+. ..+.-...+.+-++-|- -+..|++|.-=||+-..+
T Consensus 108 wfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~W 187 (384)
T PF14587_consen 108 WFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQWNW 187 (384)
T ss_dssp HHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS-G
T ss_pred HHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCCCC
Confidence 58899999999999988776311 121 12222233333333321 136799999999998764
Q ss_pred C---C----CchhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccc
Q 015411 121 D---T----SLSGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVL 159 (407)
Q Consensus 121 ~---~----s~~~~Ll~am~~v~~aL~~~gl~~~I~VsTa~~~~vl 159 (407)
. . -..++....|+.++.+|++.||..+|-+.-+..+..+
T Consensus 188 ~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea~~~~~l 233 (384)
T PF14587_consen 188 AGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEAGDWEYL 233 (384)
T ss_dssp G--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEESSGGGG
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecchhhHHHH
Confidence 1 1 1267888999999999999999765544444444443
No 38
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=52.51 E-value=2.4e+02 Score=27.84 Aligned_cols=158 Identities=13% Similarity=0.165 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCcccccchhhhhhhhhhhhhhcCCCeeeecCCCccccCCCCccC
Q 015411 131 AMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFAYKGSPKQVS 210 (407)
Q Consensus 131 am~~v~~aL~~~gl~~~I~VsTa~~~~vl~~s~pPS~g~F~~~l~~~l~~~ldfL~~~~sp~~vNiyPyf~~~~~p~~i~ 210 (407)
.+-+-+...++.|.+ -| |+-....+--...+|...|.+.++..+.+++++|.+.+.|+.+.+.++.- +........
T Consensus 34 ~~~~~y~~ra~gg~g-li-i~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~--G~~~~~~~~ 109 (327)
T cd02803 34 ELIEYYEERAKGGVG-LI-ITEAAYVDPEGKGYPGQLGIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHA--GRQAQPNLT 109 (327)
T ss_pred HHHHHHHHHhCcCCc-EE-EECcEEEcCcccCCCCCcCcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCC--CcCCCCcCC
Confidence 334445555554442 12 33323333334456777788888888899999999999999988877431 111000000
Q ss_pred cccccccCC-------CCcccCCCcchhhhHHHHHHHHHHHHHHHcCCCCccEEEeeec-------cCCC-CCCCCCCCC
Q 015411 211 LDFVLFQPN-------QGIVDPASNLHYDNMLFAQIDAVYAALASLGYKKLLLHISETG-------WPSK-GDEDEAGAT 275 (407)
Q Consensus 211 l~yAlf~~~-------~~v~d~~~~~~y~nl~daqvDav~~Al~k~g~~~~~VvVtETG-------WPS~-G~~~~~~As 275 (407)
-. ..+.|+ ......-+...-..+.+..+++...|. ++|+..++|+.+ -| .|.. -...+.+.+
T Consensus 110 ~~-~~~~~s~~~~~~~~~~~~~mt~~ei~~~i~~~~~aA~~a~-~aGfDgveih~~-~gyL~~qFlsp~~n~R~d~yGgs 186 (327)
T cd02803 110 GG-PPPAPSAIPSPGGGEPPREMTKEEIEQIIEDFAAAARRAK-EAGFDGVEIHGA-HGYLLSQFLSPYTNKRTDEYGGS 186 (327)
T ss_pred CC-CccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHH-HcCCCEEEEcch-hhhHHHHhcCccccCCCcccCCC
Confidence 00 000010 001111222234456666666666664 489999999986 24 3542 112235678
Q ss_pred HHHHHHHHHHHHHHHhccCC
Q 015411 276 PENAKKYNGNLIKLISSKKG 295 (407)
Q Consensus 276 ~~Na~~y~~~li~~~~~~~G 295 (407)
.+|-.+|....++.+++..|
T Consensus 187 ~enr~r~~~eii~avr~~~g 206 (327)
T cd02803 187 LENRARFLLEIVAAVREAVG 206 (327)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999986544
No 39
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=52.50 E-value=26 Score=32.02 Aligned_cols=42 Identities=24% Similarity=0.329 Sum_probs=30.7
Q ss_pred hHHHHHHhhcCCCEEEe----------ccCC--------------hHHHHHHHhcCCeEEEEeccc
Q 015411 38 ENVIPLVKSIGATRVKL----------YDAD--------------PKVLKAFANTGVEFTVSLGNE 79 (407)
Q Consensus 38 ~~v~~llks~gi~~VRl----------Y~~d--------------~~vL~A~a~tgi~v~lGv~n~ 79 (407)
++.++.||..||+.|=+ |.++ ..+|+++.+.||||.+|++.+
T Consensus 23 ~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~ 88 (166)
T PF14488_consen 23 REEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD 88 (166)
T ss_pred HHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC
Confidence 35677888888877622 2221 358888899999999999965
No 40
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=51.28 E-value=50 Score=32.81 Aligned_cols=79 Identities=19% Similarity=0.234 Sum_probs=42.7
Q ss_pred HHHHHh--cCCeEEEEecccc----cccCC-CHHHHHHHHHHHhhhhCCCceEEEEEecccccccCCCCchhhHHHHHHH
Q 015411 62 LKAFAN--TGVEFTVSLGNEY----LAKMR-DPDCAKAWIKSNVQAYLPATKITCITVGNEVLTFNDTSLSGCLLPAMES 134 (407)
Q Consensus 62 L~A~a~--tgi~v~lGv~n~~----l~~~a-~~~~A~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~s~~~~Ll~am~~ 134 (407)
+.++++ .++||++.|.... ...+. ++..... +.++|..++..-.+.+|-+==|...... .....++..|+.
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~-fi~~i~~~~~~~~~DGidiDwE~~~~~~-~d~~~~~~ll~~ 134 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKK-FIDSIVSFLKKYGFDGIDIDWEYPGARG-DDRENYTALLKE 134 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHH-HHHHHHHHHHHcCCCeEEECCcCCCCCc-cHHHHHHHHHHH
Confidence 455554 3899999887521 22232 3332222 3334433333334666666434332210 124578889999
Q ss_pred HHHHHHhC
Q 015411 135 VHTALVNL 142 (407)
Q Consensus 135 v~~aL~~~ 142 (407)
+|++|.+.
T Consensus 135 lr~~l~~~ 142 (334)
T smart00636 135 LREALDKE 142 (334)
T ss_pred HHHHHHHh
Confidence 99999864
No 41
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=50.27 E-value=3e+02 Score=28.26 Aligned_cols=126 Identities=17% Similarity=0.187 Sum_probs=77.1
Q ss_pred CCC-CCcccccchhhhhhhhhhhhhhcCCCeeeecCCCccccCCCCccCcccccccCCC----------CcccCCCcchh
Q 015411 163 YPP-SAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFAYKGSPKQVSLDFVLFQPNQ----------GIVDPASNLHY 231 (407)
Q Consensus 163 ~pP-S~g~F~~~l~~~l~~~ldfL~~~~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~----------~v~d~~~~~~y 231 (407)
+|. ..|.+.++..+-++.++|.+-+.|+.+.+.++- .+........ ......|+. .....-|...-
T Consensus 69 ~~~~~~~l~~d~~i~~~~~l~~~vh~~G~~i~~QL~H--~G~~~~~~~~-~~~~~~ps~~~~~~~~~~~~~p~~mt~~eI 145 (370)
T cd02929 69 TPRISARLWDDGDIRNLAAMTDAVHKHGALAGIELWH--GGAHAPNRES-RETPLGPSQLPSEFPTGGPVQAREMDKDDI 145 (370)
T ss_pred CcccCcCcCCHHHHHHHHHHHHHHHHCCCeEEEeccc--CCCCCCccCC-CCCccCCCCCCCCccccCCCCCccCCHHHH
Confidence 444 467888888889999999999999999888751 1211100000 000011110 00011111223
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCccEEEeeec-------cCC---CCCCCCCCCCHHHHHHHHHHHHHHHhccCC
Q 015411 232 DNMLFAQIDAVYAALASLGYKKLLLHISETG-------WPS---KGDEDEAGATPENAKKYNGNLIKLISSKKG 295 (407)
Q Consensus 232 ~nl~daqvDav~~Al~k~g~~~~~VvVtETG-------WPS---~G~~~~~~As~~Na~~y~~~li~~~~~~~G 295 (407)
..+.+...+|...|. ++|+..++|+-+- | .|. .-| +.+.|.+|-.+|...+++.+++..|
T Consensus 146 ~~ii~~f~~AA~ra~-~aGfDgVEih~ah-GyLl~QFlSp~~N~RtD--~yGGslenR~Rf~~eii~aIr~~vg 215 (370)
T cd02929 146 KRVRRWYVDAALRAR-DAGFDIVYVYAAH-GYLPLQFLLPRYNKRTD--EYGGSLENRARFWRETLEDTKDAVG 215 (370)
T ss_pred HHHHHHHHHHHHHHH-HcCCCEEEEcccc-cchHHHhhCccccCCcc--ccCCChHhhhHHHHHHHHHHHHHcC
Confidence 345666666766664 4899999998765 3 233 333 3578999999999999999987666
No 42
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=49.66 E-value=1.8e+02 Score=30.53 Aligned_cols=59 Identities=17% Similarity=0.242 Sum_probs=32.5
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCcccccchhhhhhhhhhhhhhcCCCeeeecCCCccc
Q 015411 125 SGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFAY 202 (407)
Q Consensus 125 ~~~Ll~am~~v~~aL~~~gl~~~I~VsTa~~~~vl~~s~pPS~g~F~~~l~~~l~~~ldfL~~~~sp~~vNiyPyf~~ 202 (407)
.+....+++.+|+++ ..+.++|..-. .+| | +-.+.+...++|+.+.+ +-.+++++|--.
T Consensus 281 ~~~~~~~i~~lr~~~------~~i~i~~d~Iv-----G~P---g----ET~ed~~~tl~~i~~l~-~~~~~~~~~sp~ 339 (439)
T PRK14328 281 REYYLELVEKIKSNI------PDVAITTDIIV-----GFP---G----ETEEDFEETLDLVKEVR-YDSAFTFIYSKR 339 (439)
T ss_pred HHHHHHHHHHHHHhC------CCCEEEEEEEE-----ECC---C----CCHHHHHHHHHHHHhcC-CCcccceEecCC
Confidence 677778888777752 13555543321 244 1 11234556778877654 335677766533
No 43
>PLN02998 beta-glucosidase
Probab=48.74 E-value=30 Score=37.22 Aligned_cols=45 Identities=13% Similarity=0.276 Sum_probs=35.3
Q ss_pred hHHHHHHhhcCCCEEEec-------c-----CC-------hHHHHHHHhcCCeEEEEecccccc
Q 015411 38 ENVIPLVKSIGATRVKLY-------D-----AD-------PKVLKAFANTGVEFTVSLGNEYLA 82 (407)
Q Consensus 38 ~~v~~llks~gi~~VRlY-------~-----~d-------~~vL~A~a~tgi~v~lGv~n~~l~ 82 (407)
+++++++|++|++.-|+= = .| .+++.++.+.||+-+|.+.--+++
T Consensus 85 ~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP 148 (497)
T PLN02998 85 KEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLP 148 (497)
T ss_pred HHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCC
Confidence 689999999998887752 1 13 368999999999999999855543
No 44
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=48.07 E-value=29 Score=32.41 Aligned_cols=33 Identities=21% Similarity=0.539 Sum_probs=30.2
Q ss_pred HHHHhhcCCCEEEeccCChHHHHHHHhcCCeEE
Q 015411 41 IPLVKSIGATRVKLYDADPKVLKAFANTGVEFT 73 (407)
Q Consensus 41 ~~llks~gi~~VRlY~~d~~vL~A~a~tgi~v~ 73 (407)
.++|+.+|++++|+.+..+.=+.++.+.|++|.
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv 165 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVV 165 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEE
Confidence 689999999999999998877889999999997
No 45
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=46.78 E-value=2.8e+02 Score=29.00 Aligned_cols=109 Identities=13% Similarity=0.149 Sum_probs=53.2
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCcccccchhhhhhhhhhhhhhcCCCeeeecCCCccccC
Q 015411 125 SGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFAYKG 204 (407)
Q Consensus 125 ~~~Ll~am~~v~~aL~~~gl~~~I~VsTa~~~~vl~~s~pPS~g~F~~~l~~~l~~~ldfL~~~~sp~~vNiyPyf~~~~ 204 (407)
.++.+.+++.+|++.. .+.++|.. + -.|| | |-.+.+.+.++|+.+.+-. .+++|+|-.+-.
T Consensus 264 ~~~~~~~v~~lr~~~p------~i~i~~d~----I-vGfP---g----ETeedf~~Tl~fl~~l~~~-~~~~f~~sp~pG 324 (420)
T PRK14339 264 KEWFLNRAEKLRALVP------EVSISTDI----I-VGFP---G----ESDKDFEDTMDVLEKVRFE-QIFSFKYSPRPL 324 (420)
T ss_pred HHHHHHHHHHHHHHCC------CCEEEEEE----E-EECC---C----CCHHHHHHHHHHHHhcCCC-EEeeEecCCCCC
Confidence 6777888888887632 35666632 2 2345 1 1124456677887765422 357766443322
Q ss_pred CCCccCcccccccCCCCcccCCCcchhhhHHHHHHHHHHHHHHHcCCCCccEEEee
Q 015411 205 SPKQVSLDFVLFQPNQGIVDPASNLHYDNMLFAQIDAVYAALASLGYKKLLLHISE 260 (407)
Q Consensus 205 ~p~~i~l~yAlf~~~~~v~d~~~~~~y~nl~daqvDav~~Al~k~g~~~~~VvVtE 260 (407)
.| . +. +. + .+.......+...+.+.+-+-.+...++.-....+|+|.+
T Consensus 325 T~---a--~~-~~-~-~v~~~~k~~R~~~l~~~~~~~~~~~~~~~vG~~~~vlve~ 372 (420)
T PRK14339 325 TE---A--AA-WK-N-QVDEEVASERLERLQNRHKEILDEIAKKEVGKTHVVLFEE 372 (420)
T ss_pred Cc---h--hh-CC-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE
Confidence 22 1 11 11 1 1211112234555555444444444444433567788754
No 46
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=46.52 E-value=1.1e+02 Score=36.06 Aligned_cols=97 Identities=20% Similarity=0.180 Sum_probs=59.9
Q ss_pred ceeEEecCCCCC---CCCH---hHHHHHHhhcCCCEEEecc--CChHHHHHHHhcCCeEEEEeccccc--------ccCC
Q 015411 22 SIGINYGQIANN---LPTP---ENVIPLVKSIGATRVKLYD--ADPKVLKAFANTGVEFTVSLGNEYL--------AKMR 85 (407)
Q Consensus 22 ~~GVnYg~~~~n---lps~---~~v~~llks~gi~~VRlY~--~d~~vL~A~a~tgi~v~lGv~n~~l--------~~~a 85 (407)
..|+|+-..... ..++ .++++++|++|++.||+-- .++..++++-..||-|+--++.+.. ..+.
T Consensus 336 lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~ 415 (1021)
T PRK10340 336 LHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRIT 415 (1021)
T ss_pred EEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCccccccccccc
Confidence 458886543211 1233 4567899999999999853 3367899999999999876532211 1111
Q ss_pred -CH---HHHHHHHHHHhhhhCCCceEEEEEecccccc
Q 015411 86 -DP---DCAKAWIKSNVQAYLPATKITCITVGNEVLT 118 (407)
Q Consensus 86 -~~---~~A~~wv~~~v~~~~p~~~I~~I~VGNEvl~ 118 (407)
++ +...+.+++.|....---.|..-++|||.-.
T Consensus 416 ~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~ 452 (1021)
T PRK10340 416 DDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESGY 452 (1021)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccc
Confidence 22 2223445666666532235888889999743
No 47
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=46.52 E-value=3.3e+02 Score=28.41 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=33.5
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCcccccchhhhhhhhhhhhhhcCCCeeeecCCCcc
Q 015411 125 SGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFA 201 (407)
Q Consensus 125 ~~~Ll~am~~v~~aL~~~gl~~~I~VsTa~~~~vl~~s~pPS~g~F~~~l~~~l~~~ldfL~~~~sp~~vNiyPyf~ 201 (407)
..++..+++.+|+++ + .+.++|..-. .|| | |-.+.+...++|+.+.+- -.+|+++|--
T Consensus 258 ~~~~~~~i~~lr~~~-----p-gi~i~~d~Iv-----GfP---G----ET~edf~~tl~fi~~~~~-~~~~v~~ysp 315 (418)
T PRK14336 258 NQQYRELVERLKTAM-----P-DISLQTDLIV-----GFP---S----ETEEQFNQSYKLMADIGY-DAIHVAAYSP 315 (418)
T ss_pred HHHHHHHHHHHHhhC-----C-CCEEEEEEEE-----ECC---C----CCHHHHHHHHHHHHhcCC-CEEEeeecCC
Confidence 677888888888763 2 3556554322 244 1 112345667788777542 3467776654
No 48
>PLN02814 beta-glucosidase
Probab=45.68 E-value=37 Score=36.65 Aligned_cols=46 Identities=17% Similarity=0.295 Sum_probs=35.7
Q ss_pred HhHHHHHHhhcCCCEEEe-------cc-----CC-------hHHHHHHHhcCCeEEEEecccccc
Q 015411 37 PENVIPLVKSIGATRVKL-------YD-----AD-------PKVLKAFANTGVEFTVSLGNEYLA 82 (407)
Q Consensus 37 ~~~v~~llks~gi~~VRl-------Y~-----~d-------~~vL~A~a~tgi~v~lGv~n~~l~ 82 (407)
-+++++|+|++|++.-|+ += .+ .+++.++.+.||+-+|.+.--+++
T Consensus 79 y~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP 143 (504)
T PLN02814 79 YKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLP 143 (504)
T ss_pred hHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCC
Confidence 378999999999887764 31 12 368999999999999999755544
No 49
>PLN02849 beta-glucosidase
Probab=45.06 E-value=56 Score=35.23 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=35.0
Q ss_pred hHHHHHHhhcCCCEEEe-------cc-----CC-------hHHHHHHHhcCCeEEEEecccccc
Q 015411 38 ENVIPLVKSIGATRVKL-------YD-----AD-------PKVLKAFANTGVEFTVSLGNEYLA 82 (407)
Q Consensus 38 ~~v~~llks~gi~~VRl-------Y~-----~d-------~~vL~A~a~tgi~v~lGv~n~~l~ 82 (407)
+++++|||++|++.-|+ +- .| .+++.++.+.||+-+|.+.--+++
T Consensus 82 ~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP 145 (503)
T PLN02849 82 KEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHP 145 (503)
T ss_pred HHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCc
Confidence 68999999999887774 31 12 368999999999999999754443
No 50
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=44.46 E-value=27 Score=36.24 Aligned_cols=33 Identities=9% Similarity=0.268 Sum_probs=29.5
Q ss_pred HHHHHhhcCCCEEEeccCChHHHHHHHhcCCeEE
Q 015411 40 VIPLVKSIGATRVKLYDADPKVLKAFANTGVEFT 73 (407)
Q Consensus 40 v~~llks~gi~~VRlY~~d~~vL~A~a~tgi~v~ 73 (407)
-.++|+.+||++|||. ++|.=+.++.+.||+|.
T Consensus 330 gAqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~ 362 (369)
T PRK12485 330 GAQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVV 362 (369)
T ss_pred HHHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEE
Confidence 3689999999999999 67888888999999986
No 51
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=43.08 E-value=80 Score=27.65 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=36.8
Q ss_pred hHHHHHHhhcCCCEEEeccCChHHHHHHHhcCCeEEEEec
Q 015411 38 ENVIPLVKSIGATRVKLYDADPKVLKAFANTGVEFTVSLG 77 (407)
Q Consensus 38 ~~v~~llks~gi~~VRlY~~d~~vL~A~a~tgi~v~lGv~ 77 (407)
..+.++|+.+|++.|=+..--+..+.+|++.||+|+.+..
T Consensus 55 ~~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 55 IRIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 3578999999999999999899999999999999999987
No 52
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=41.56 E-value=4.9e+02 Score=28.18 Aligned_cols=59 Identities=14% Similarity=0.191 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCcccccchhhhhhhhhhhhhhcCCCeeeecCCCccc
Q 015411 125 SGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFAY 202 (407)
Q Consensus 125 ~~~Ll~am~~v~~aL~~~gl~~~I~VsTa~~~~vl~~s~pPS~g~F~~~l~~~l~~~ldfL~~~~sp~~vNiyPyf~~ 202 (407)
.++.+.+++.+|+++ ..+.++|..- -.|| | |-.+.+.+.++|+.+.+-. .+++|+|--.
T Consensus 346 ~e~~~~~v~~lr~~~------p~i~i~tdiI-----vGfP---g----ET~edf~~Tl~~v~~l~~d-~~~~f~yspr 404 (509)
T PRK14327 346 RESYLELVRKIKEAI------PNVALTTDII-----VGFP---N----ETDEQFEETLSLYREVGFD-HAYTFIYSPR 404 (509)
T ss_pred HHHHHHHHHHHHHhC------CCcEEeeeEE-----EeCC---C----CCHHHHHHHHHHHHHcCCC-eEEEeeeeCC
Confidence 677888888888763 1355655432 1244 1 1123455667777765432 4666665543
No 53
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=41.41 E-value=2.7e+02 Score=29.15 Aligned_cols=111 Identities=11% Similarity=0.099 Sum_probs=54.3
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCcccccchhhhhhhhhhhhhhcCCCeeeecCCCccccC
Q 015411 125 SGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFAYKG 204 (407)
Q Consensus 125 ~~~Ll~am~~v~~aL~~~gl~~~I~VsTa~~~~vl~~s~pPS~g~F~~~l~~~l~~~ldfL~~~~sp~~vNiyPyf~~~~ 204 (407)
......+++.+|+.+ ..+.|+|..-. .+| | |-.+.+...++|+.+.+- =.+++++|-.+-.
T Consensus 274 ~~~~~~~i~~lr~~~------~~i~i~~d~Iv-----GfP---g----ET~edf~~tl~fi~~~~~-~~~~~~~~sp~pG 334 (434)
T PRK14330 274 REEYLELIEKIRSKV------PDASISSDIIV-----GFP---T----ETEEDFMETVDLVEKAQF-ERLNLAIYSPREG 334 (434)
T ss_pred HHHHHHHHHHHHHhC------CCCEEEEEEEE-----ECC---C----CCHHHHHHHHHHHHhcCC-CEEeeeeccCCCC
Confidence 567777777777752 13566665321 244 1 122456677888877663 2566666654433
Q ss_pred CCCccCcccccccCCCCcccCCCcchhhhHHHHHHHHHHHHHHHcCCCCccEEEeee
Q 015411 205 SPKQVSLDFVLFQPNQGIVDPASNLHYDNMLFAQIDAVYAALASLGYKKLLLHISET 261 (407)
Q Consensus 205 ~p~~i~l~yAlf~~~~~v~d~~~~~~y~nl~daqvDav~~Al~k~g~~~~~VvVtET 261 (407)
.| -|..+. ..+.+.....++..|.+-+-.-.....++.-....+|+|.+.
T Consensus 335 T~-----~~~~~~--~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~G~~~~vlve~~ 384 (434)
T PRK14330 335 TV-----AWKYYK--DDVPYEEKVRRMQYLLNLQKRINRKLNERYLGKTVEIIVEAK 384 (434)
T ss_pred Ch-----hhhhCc--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEc
Confidence 22 111111 112222222345555544433333333333335678888643
No 54
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=40.77 E-value=1.1e+02 Score=29.15 Aligned_cols=42 Identities=14% Similarity=0.354 Sum_probs=25.4
Q ss_pred HcCCCCccEEEeeeccCCCCCCCC---CCCCHHHHHHHHHHHHHHHhc
Q 015411 248 SLGYKKLLLHISETGWPSKGDEDE---AGATPENAKKYNGNLIKLISS 292 (407)
Q Consensus 248 k~g~~~~~VvVtETGWPS~G~~~~---~~As~~Na~~y~~~li~~~~~ 292 (407)
..+++..+|+. .|||.|...+ ...+...++..+..+++.+.+
T Consensus 44 ~~~~~~~~i~F---sWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~ 88 (233)
T PF05990_consen 44 DLGFPGVVILF---SWPSDGSLLGYFYDRESARFSGPALARFLRDLAR 88 (233)
T ss_pred HhCCCceEEEE---EcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 35677655555 5999998643 234444555566666666653
No 55
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=40.75 E-value=34 Score=35.48 Aligned_cols=33 Identities=18% Similarity=0.511 Sum_probs=29.9
Q ss_pred HHHHhhcCCCEEEeccCChHHHHHHHhcCCeEEE
Q 015411 41 IPLVKSIGATRVKLYDADPKVLKAFANTGVEFTV 74 (407)
Q Consensus 41 ~~llks~gi~~VRlY~~d~~vL~A~a~tgi~v~l 74 (407)
.++|+.+|+++|||.. +|.=+.++.+.||+|.=
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~ 360 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTG 360 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEE
Confidence 6899999999999999 88888889999999973
No 56
>KOG2775 consensus Metallopeptidase [General function prediction only]
Probab=40.63 E-value=39 Score=34.32 Aligned_cols=106 Identities=22% Similarity=0.365 Sum_probs=64.4
Q ss_pred hhhHHHHHHHHHH-HHHhCCCCCCeEEeeeeecccccccCCCCCccccc-chhhhhhhhhhhhhhcCCCeeeecCCCccc
Q 015411 125 SGCLLPAMESVHT-ALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRK-DLVDCITPILDFHVKTASPFLINAYPYFAY 202 (407)
Q Consensus 125 ~~~Ll~am~~v~~-aL~~~gl~~~I~VsTa~~~~vl~~s~pPS~g~F~~-~l~~~l~~~ldfL~~~~sp~~vNiyPyf~~ 202 (407)
.-++..-|.|.-. .+...|+...|-.-|-.+++.-+..|.|.+|.=.- ...++|+ +|| ++|+-
T Consensus 112 m~ei~e~iEnttR~li~e~gl~aGi~FPtG~SlN~cAAHyTpNaGd~tVLqydDV~K--iDf--------Gthi~----- 176 (397)
T KOG2775|consen 112 MIEICETIENTTRKLILENGLNAGIGFPTGCSLNHCAAHYTPNAGDKTVLKYDDVMK--IDF--------GTHID----- 176 (397)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccCCCcccccchhhhcCCCCCCceeeeecceEE--Eec--------ccccc-----
Confidence 3456666666544 55667787778777888888888889999887420 0012333 455 44432
Q ss_pred cCCCCccCcccc-cccCCCCcccCCCcchhhhHHHHHHHHHHHHHHHcCCCCccEEEeeec
Q 015411 203 KGSPKQVSLDFV-LFQPNQGIVDPASNLHYDNMLFAQIDAVYAALASLGYKKLLLHISETG 262 (407)
Q Consensus 203 ~~~p~~i~l~yA-lf~~~~~v~d~~~~~~y~nl~daqvDav~~Al~k~g~~~~~VvVtETG 262 (407)
.+-|+-.|- .|+| .|++++.|.-||.+..++.+| +.|.+.+.|
T Consensus 177 ---GrIiDsAFTv~F~p-----------~~d~Ll~AvreaT~tGIkeaG---iDvRlcdiG 220 (397)
T KOG2775|consen 177 ---GRIIDSAFTVAFNP-----------KYDPLLAAVREATNTGIKEAG---IDVRLCDIG 220 (397)
T ss_pred ---CeEeeeeeEEeeCc-----------cccHHHHHHHHHHhhhhhhcC---ceeeehhhh
Confidence 122222221 1332 488899999999988888776 455555543
No 57
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=39.83 E-value=5.2e+02 Score=27.95 Aligned_cols=90 Identities=19% Similarity=0.155 Sum_probs=52.5
Q ss_pred hcCCeEEEEeccc--------ccc---cCC---CH---HHHHHHHHHHhhhhCC-CceEEEEEeccccccc------CCC
Q 015411 67 NTGVEFTVSLGNE--------YLA---KMR---DP---DCAKAWIKSNVQAYLP-ATKITCITVGNEVLTF------NDT 122 (407)
Q Consensus 67 ~tgi~v~lGv~n~--------~l~---~~a---~~---~~A~~wv~~~v~~~~p-~~~I~~I~VGNEvl~~------~~~ 122 (407)
+.+++|+...|-- ... .+. .+ +.=...+.+-|+.|-. +-.|.+|++.||.... ++.
T Consensus 166 ~~~lki~aSpWSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s 245 (496)
T PF02055_consen 166 NPNLKIFASPWSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPS 245 (496)
T ss_dssp HTT-EEEEEES---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC-
T ss_pred CCCcEEEEecCCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCc
Confidence 4569999999842 111 111 11 1223455566666643 3679999999999863 221
Q ss_pred -C-chhhHHHHHHH-HHHHHHhCCCCCCeEEee-eeec
Q 015411 123 -S-LSGCLLPAMES-VHTALVNLGLDKQVSVTT-AHSL 156 (407)
Q Consensus 123 -s-~~~~Ll~am~~-v~~aL~~~gl~~~I~VsT-a~~~ 156 (407)
. .+++....|++ +.-+|++.|+..++|+=. .|++
T Consensus 246 ~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~ 283 (496)
T PF02055_consen 246 MGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNR 283 (496)
T ss_dssp -B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEG
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCC
Confidence 1 15677777876 999999999966687643 4543
No 58
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=39.38 E-value=43 Score=35.01 Aligned_cols=39 Identities=23% Similarity=0.488 Sum_probs=33.6
Q ss_pred HHHHHhhcCCCEEEeccCChHHHHHHHhcCCeEEEEecc
Q 015411 40 VIPLVKSIGATRVKLYDADPKVLKAFANTGVEFTVSLGN 78 (407)
Q Consensus 40 v~~llks~gi~~VRlY~~d~~vL~A~a~tgi~v~lGv~n 78 (407)
..++|+.+|+++||+...+|.=+.++.+.||+|.==++.
T Consensus 319 gAqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vpl 357 (387)
T PRK09318 319 AFQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVPL 357 (387)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecc
Confidence 368999999999999999998888999999999844443
No 59
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=38.97 E-value=4.9e+02 Score=27.79 Aligned_cols=184 Identities=15% Similarity=0.180 Sum_probs=89.1
Q ss_pred ceeEEecCCCCCCCC----HhHHHHHHhh-cCCCEEEeccCC-----hHHHHHHHhc-CCeEEEEecccccccCCCHHHH
Q 015411 22 SIGINYGQIANNLPT----PENVIPLVKS-IGATRVKLYDAD-----PKVLKAFANT-GVEFTVSLGNEYLAKMRDPDCA 90 (407)
Q Consensus 22 ~~GVnYg~~~~nlps----~~~v~~llks-~gi~~VRlY~~d-----~~vL~A~a~t-gi~v~lGv~n~~l~~~a~~~~A 90 (407)
.+|.|=+.||.+++. -.+.++.|.. -|+.+||+=..+ .+++++++.+ .+-=.+-+|.+ +-++
T Consensus 195 L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQ---sGsd---- 267 (437)
T COG0621 195 LTGQDVNAYGKDLGGGKPNLADLLRELSKIPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQ---SGSD---- 267 (437)
T ss_pred EEEEehhhccccCCCCccCHHHHHHHHhcCCCceEEEEecCCchhcCHHHHHHHhcCCcccccccCccc---cCCH----
Confidence 568888888877753 3333332222 467888887666 4688887764 33323333321 1110
Q ss_pred HHHHHHHhhhhCCCceEEEEEecccccccCCCCchhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCccc
Q 015411 91 KAWIKSNVQAYLPATKITCITVGNEVLTFNDTSLSGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAF 170 (407)
Q Consensus 91 ~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~s~~~~Ll~am~~v~~aL~~~gl~~~I~VsTa~~~~vl~~s~pPS~g~F 170 (407)
.|+. .|.|.. + .+..+.-++.+|++... +.++|..- -.|| |.=
T Consensus 268 ------~ILk---------------~M~R~y-t-~e~~~~~i~k~R~~~Pd------~~i~tDiI-----VGFP---gET 310 (437)
T COG0621 268 ------RILK---------------RMKRGY-T-VEEYLEIIEKLRAARPD------IAISTDII-----VGFP---GET 310 (437)
T ss_pred ------HHHH---------------HhCCCc-C-HHHHHHHHHHHHHhCCC------ceEeccEE-----EECC---CCC
Confidence 0111 123322 2 67788888888888654 44444331 1255 221
Q ss_pred ccchhhhhhhhhhhhhhcCCCeeeecCCCccccCCCCccCcccccccCCCCcccCCCcchhhhHHHHHHHHHHHHHHHcC
Q 015411 171 RKDLVDCITPILDFHVKTASPFLINAYPYFAYKGSPKQVSLDFVLFQPNQGIVDPASNLHYDNMLFAQIDAVYAALASLG 250 (407)
Q Consensus 171 ~~~l~~~l~~~ldfL~~~~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~v~d~~~~~~y~nl~daqvDav~~Al~k~g 250 (407)
.+ .....+||+.+.+ +=.+|++||=.--..| .+ ... + .+.+.-..-+..-|-.-+.+-....+++.-
T Consensus 311 ee----dFe~tl~lv~e~~-fd~~~~F~YSpRpGTp-----Aa-~~~-~-qvp~~vkkeR~~~L~~l~~~~~~~~~~~~v 377 (437)
T COG0621 311 EE----DFEETLDLVEEVR-FDRLHVFKYSPRPGTP-----AA-LMP-D-QVPEEVKKERLRRLQELQQQISAEFNQKLV 377 (437)
T ss_pred HH----HHHHHHHHHHHhC-CCEEeeeecCCCCCCc-----cc-cCC-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11 2233456655544 2378888865433322 11 111 0 111111122333333333333333444444
Q ss_pred CCCccEEEeeec
Q 015411 251 YKKLLLHISETG 262 (407)
Q Consensus 251 ~~~~~VvVtETG 262 (407)
....+|+|.|-+
T Consensus 378 G~~~~VLVe~~~ 389 (437)
T COG0621 378 GKTLEVLVEEGG 389 (437)
T ss_pred CCEEEEEEEecc
Confidence 466888888733
No 60
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=38.84 E-value=3.7e+02 Score=26.50 Aligned_cols=139 Identities=14% Similarity=0.193 Sum_probs=69.7
Q ss_pred CCCCCHhHHHHHHhhcCCCEEEeccCC-------hHHHHHHH---hcCCeEEEEecccccccC-CCHHHHHHHHHHHhhh
Q 015411 32 NNLPTPENVIPLVKSIGATRVKLYDAD-------PKVLKAFA---NTGVEFTVSLGNEYLAKM-RDPDCAKAWIKSNVQA 100 (407)
Q Consensus 32 ~nlps~~~v~~llks~gi~~VRlY~~d-------~~vL~A~a---~tgi~v~lGv~n~~l~~~-a~~~~A~~wv~~~v~~ 100 (407)
-+.++|.+.++-|+..|+++|-+-.+. ..+++... ..--++.+|-|.=..... ++++.. .-+.+.+..
T Consensus 55 ~~i~~~~eaL~~L~~~G~~~V~VQplhiipG~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~-~~va~aL~~ 133 (262)
T PF06180_consen 55 IKIDSPEEALAKLADEGYTEVVVQPLHIIPGEEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDY-EAVAEALAE 133 (262)
T ss_dssp -----HHHHHHHHHHCT--EEEEEE--SCSSHHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHH-HHHHHHHHC
T ss_pred CCcCCHHHHHHHHHHCCCCEEEEeecceeCcHhHHHHHHHHHHhhccCCeEEecccccccccccCChHHH-HHHHHHHHH
Confidence 357999999999999999999998876 34444433 334689999885221111 122211 224445544
Q ss_pred hCC----CceEEEEEecccccccCCCCchhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCcccccchhh
Q 015411 101 YLP----ATKITCITVGNEVLTFNDTSLSGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVD 176 (407)
Q Consensus 101 ~~p----~~~I~~I~VGNEvl~~~~~s~~~~Ll~am~~v~~aL~~~gl~~~I~VsTa~~~~vl~~s~pPS~g~F~~~l~~ 176 (407)
.+| +..+..+-=||+-- .. .+-..++..|++.++. ++-|+|.+. +|
T Consensus 134 ~~~~~~~~~a~vlmGHGt~h~-------an---~~Y~~l~~~l~~~~~~-~v~vgtvEG-------~P------------ 183 (262)
T PF06180_consen 134 EFPKKRKDEAVVLMGHGTPHP-------AN---AAYSALQAMLKKHGYP-NVFVGTVEG-------YP------------ 183 (262)
T ss_dssp CS-TT-TTEEEEEEE---SCH-------HH---HHHHHHHHHHHCCT-T-TEEEEETTS-------SS------------
T ss_pred hccccCCCCEEEEEeCCCCCC-------cc---HHHHHHHHHHHhCCCC-eEEEEEeCC-------CC------------
Confidence 444 33444444455321 22 2345567778888775 689999863 45
Q ss_pred hhhhhhhhhhhcCCCeeeecCCCccc
Q 015411 177 CITPILDFHVKTASPFLINAYPYFAY 202 (407)
Q Consensus 177 ~l~~~ldfL~~~~sp~~vNiyPyf~~ 202 (407)
.+..+++.|.+.+-- -|.+.||.--
T Consensus 184 ~~~~vi~~L~~~g~k-~V~L~PlMlV 208 (262)
T PF06180_consen 184 SLEDVIARLKKKGIK-KVHLIPLMLV 208 (262)
T ss_dssp BHHHHHHHHHHHT-S-EEEEEEESSS
T ss_pred CHHHHHHHHHhcCCC-eEEEEecccc
Confidence 123344455554422 4888898853
No 61
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=38.09 E-value=43 Score=34.40 Aligned_cols=34 Identities=18% Similarity=0.329 Sum_probs=30.7
Q ss_pred HHHHHhhcCCCEEEeccCC-hHHHHHHHhcCCeEE
Q 015411 40 VIPLVKSIGATRVKLYDAD-PKVLKAFANTGVEFT 73 (407)
Q Consensus 40 v~~llks~gi~~VRlY~~d-~~vL~A~a~tgi~v~ 73 (407)
..++|+.+|+++|||...+ |.=+.++.+.||+|.
T Consensus 300 gaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 300 GAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 4689999999999999999 887888999999986
No 62
>PRK08815 GTP cyclohydrolase; Provisional
Probab=37.87 E-value=46 Score=34.61 Aligned_cols=37 Identities=22% Similarity=0.523 Sum_probs=32.4
Q ss_pred HHHHhhcCCCEEEeccCChHHHHHHHhcCCeEEEEec
Q 015411 41 IPLVKSIGATRVKLYDADPKVLKAFANTGVEFTVSLG 77 (407)
Q Consensus 41 ~~llks~gi~~VRlY~~d~~vL~A~a~tgi~v~lGv~ 77 (407)
.++|+.+|+++||+.+.++.=+.++.+.||+|.==++
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6899999999999999999888899999999974344
No 63
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=37.13 E-value=48 Score=34.81 Aligned_cols=38 Identities=13% Similarity=0.350 Sum_probs=32.6
Q ss_pred HHHHHhhcCCCEEEeccCChHHHHHHHhcCCeEEEEec
Q 015411 40 VIPLVKSIGATRVKLYDADPKVLKAFANTGVEFTVSLG 77 (407)
Q Consensus 40 v~~llks~gi~~VRlY~~d~~vL~A~a~tgi~v~lGv~ 77 (407)
..++|+.+|+++|||...+|.=+.++.+.||+|.==++
T Consensus 338 gaqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v~ 375 (402)
T PRK09311 338 GAQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERVP 375 (402)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 46899999999999999999888899999999973333
No 64
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=36.41 E-value=49 Score=35.28 Aligned_cols=38 Identities=11% Similarity=0.300 Sum_probs=32.8
Q ss_pred HHHHHhhcCCCEEEeccCChHHHHHHHhcCCeEEEEec
Q 015411 40 VIPLVKSIGATRVKLYDADPKVLKAFANTGVEFTVSLG 77 (407)
Q Consensus 40 v~~llks~gi~~VRlY~~d~~vL~A~a~tgi~v~lGv~ 77 (407)
-.++|+.+||++|||...+|.=+.++.+.||+|.==++
T Consensus 372 gAqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 372 GAQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 36899999999999999999888899999999973333
No 65
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=36.17 E-value=91 Score=30.91 Aligned_cols=47 Identities=15% Similarity=0.112 Sum_probs=35.0
Q ss_pred HHHHcCCCCccEEEeeeccCCCCCCCC-CCCCHHHHHHHHHHHHHHHhc
Q 015411 245 ALASLGYKKLLLHISETGWPSKGDEDE-AGATPENAKKYNGNLIKLISS 292 (407)
Q Consensus 245 Al~k~g~~~~~VvVtETGWPS~G~~~~-~~As~~Na~~y~~~li~~~~~ 292 (407)
.+++. .++++|+|+=-||....+... ...++++.++|.+++++.+++
T Consensus 59 ~~k~~-~~~lkvlisiGG~~~~s~~fs~~~~~~~~R~~fi~siv~~l~~ 106 (299)
T cd02879 59 TVKRK-NPSVKTLLSIGGGGSDSSAFAAMASDPTARKAFINSSIKVARK 106 (299)
T ss_pred HHHHh-CCCCeEEEEEeCCCCCCchhhHHhCCHHHHHHHHHHHHHHHHH
Confidence 34433 478999999888986433333 457899999999999999874
No 66
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=36.00 E-value=3.2e+02 Score=27.82 Aligned_cols=55 Identities=16% Similarity=0.028 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCcccccchhhhhhhhhhhhhhcCCCeeeecCCC
Q 015411 125 SGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPY 199 (407)
Q Consensus 125 ~~~Ll~am~~v~~aL~~~gl~~~I~VsTa~~~~vl~~s~pPS~g~F~~~l~~~l~~~ldfL~~~~sp~~vNiyPy 199 (407)
...+...++.+++.|++.. .+.+|+|-.... +.. ..|. ..+.+.+|+ +..|.||.
T Consensus 208 ~~~~~~~~~~~~~~ir~~~--p~~~vt~n~~~~-~~~---------~~d~-~~~a~~~D~-------~~~d~Y~~ 262 (374)
T PF02449_consen 208 SDRVAEFFRWQADIIREYD--PDHPVTTNFMGS-WFN---------GIDY-FKWAKYLDV-------VSWDSYPD 262 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHS--TT-EEE-EE-TT-------------SS-H-HHHGGGSSS-------EEEEE-HH
T ss_pred HHHHHHHHHHHHHHHHHhC--CCceEEeCcccc-ccC---------cCCH-HHHHhhCCc-------ceeccccC
Confidence 4667788889999999886 246888754321 111 0111 134556777 89999997
No 67
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=35.60 E-value=4.7e+02 Score=27.63 Aligned_cols=130 Identities=11% Similarity=0.100 Sum_probs=66.8
Q ss_pred EEEEEec-----cccccc-CCCCchhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCcccccchhhhhhh
Q 015411 107 ITCITVG-----NEVLTF-NDTSLSGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITP 180 (407)
Q Consensus 107 I~~I~VG-----NEvl~~-~~~s~~~~Ll~am~~v~~aL~~~gl~~~I~VsTa~~~~vl~~s~pPS~g~F~~~l~~~l~~ 180 (407)
...|.+| +++|-. +......+...+++.+|++.. .+.++|.. + -.|| | |-.+.+..
T Consensus 261 ~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p------~i~i~td~----I-vGfP---g----ET~edf~~ 322 (449)
T PRK14332 261 CPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVP------DVGITTDI----I-VGFP---N----ETEEEFED 322 (449)
T ss_pred cceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCC------CCEEEEEE----E-eeCC---C----CCHHHHHH
Confidence 4567776 444422 112236788888888887632 35555532 1 1244 1 11234556
Q ss_pred hhhhhhhcCCCeeeecCCCccccCCCCccCcccccccCCCCcccCCCcchhhhHHHHHHHHHHHHHHHcCCCCccEEEee
Q 015411 181 ILDFHVKTASPFLINAYPYFAYKGSPKQVSLDFVLFQPNQGIVDPASNLHYDNMLFAQIDAVYAALASLGYKKLLLHISE 260 (407)
Q Consensus 181 ~ldfL~~~~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~v~d~~~~~~y~nl~daqvDav~~Al~k~g~~~~~VvVtE 260 (407)
.++|+.+.+-. .+++|+|-.....| .+..+. ..+.+.....++..+.+.|-.-.....++.-....+|+|.|
T Consensus 323 tl~~v~~l~~~-~~~~f~ys~~~GT~-----a~~~~~--~~v~~~~~~~R~~~l~~~~~~~~~~~~~~~vG~~~~vlve~ 394 (449)
T PRK14332 323 TLAVVREVQFD-MAFMFKYSEREGTM-----AKRKLP--DNVPEEVKSARLTKLVDLQTSISHEQNRARIGRVYSILIEN 394 (449)
T ss_pred HHHHHHhCCCC-EEEEEEecCCCCCh-----hHHhCc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEe
Confidence 67887765533 56777766443322 111121 12322233345666655555544444444434668889976
Q ss_pred ec
Q 015411 261 TG 262 (407)
Q Consensus 261 TG 262 (407)
.+
T Consensus 395 ~~ 396 (449)
T PRK14332 395 TS 396 (449)
T ss_pred cc
Confidence 44
No 68
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=35.20 E-value=53 Score=35.90 Aligned_cols=38 Identities=16% Similarity=0.408 Sum_probs=33.5
Q ss_pred HHHHHhhcCCCEEEeccCChHHHHHHHhcCCeEEEEec
Q 015411 40 VIPLVKSIGATRVKLYDADPKVLKAFANTGVEFTVSLG 77 (407)
Q Consensus 40 v~~llks~gi~~VRlY~~d~~vL~A~a~tgi~v~lGv~ 77 (407)
..++|+.+||++|||...+|.=+.++++.||+|.==++
T Consensus 342 gAQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 342 GAQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 36899999999999999999989999999999884444
No 69
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=34.93 E-value=5e+02 Score=26.33 Aligned_cols=125 Identities=14% Similarity=0.086 Sum_probs=74.3
Q ss_pred CCCCCcccccchhhhhhhhhhhhhhcCCCeeeecCCCccccCC------CCccCcccccccCCCCcccCCCcchhhhHHH
Q 015411 163 YPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFAYKGS------PKQVSLDFVLFQPNQGIVDPASNLHYDNMLF 236 (407)
Q Consensus 163 ~pPS~g~F~~~l~~~l~~~ldfL~~~~sp~~vNiyPyf~~~~~------p~~i~l~yAlf~~~~~v~d~~~~~~y~nl~d 236 (407)
+|-..+.+.++..+-+++++|.+-+.|+.+++.+..- ....+ |..++... . ......-+.-.-..+.+
T Consensus 64 ~~~~~~~~~~~~i~~~~~l~~~vh~~g~~~~~QL~h~-G~~~~~~~~~~ps~~~~~~--~---~~~p~~mt~~eI~~i~~ 137 (353)
T cd02930 64 GPGGPVLNSPRQAAGHRLITDAVHAEGGKIALQILHA-GRYAYHPLCVAPSAIRAPI--N---PFTPRELSEEEIEQTIE 137 (353)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHHHcCCEEEeeccCC-CCCCCCCCCcCCCCCCCCC--C---CCCCCCCCHHHHHHHHH
Confidence 4434566777777889999999999999999987531 11111 11110000 0 00001112222345666
Q ss_pred HHHHHHHHHHHHcCCCCccEEEeeec-------cCCC-CCCCCCCCCHHHHHHHHHHHHHHHhccCC
Q 015411 237 AQIDAVYAALASLGYKKLLLHISETG-------WPSK-GDEDEAGATPENAKKYNGNLIKLISSKKG 295 (407)
Q Consensus 237 aqvDav~~Al~k~g~~~~~VvVtETG-------WPS~-G~~~~~~As~~Na~~y~~~li~~~~~~~G 295 (407)
...+|...|. ++|+..++|+-.- | .|.. =..++-+.|.+|-.++...+++.+++.-|
T Consensus 138 ~f~~aA~~a~-~aGfDgVeih~ah-GyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG 202 (353)
T cd02930 138 DFARCAALAR-EAGYDGVEIMGSE-GYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVG 202 (353)
T ss_pred HHHHHHHHHH-HcCCCEEEEeccc-chHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcC
Confidence 6666766664 4799999886432 2 4532 12223457899999999999999987655
No 70
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=34.78 E-value=2.5e+02 Score=28.59 Aligned_cols=79 Identities=16% Similarity=0.277 Sum_probs=50.6
Q ss_pred CceeEEecCCCCCCCCHhHHHHHHhhcCCCEEEeccCChHHHHHHHhcCCeEEEEecccccccCCCHHHHHHHHHHHhhh
Q 015411 21 TSIGINYGQIANNLPTPENVIPLVKSIGATRVKLYDADPKVLKAFANTGVEFTVSLGNEYLAKMRDPDCAKAWIKSNVQA 100 (407)
Q Consensus 21 ~~~GVnYg~~~~nlps~~~v~~llks~gi~~VRlY~~d~~vL~A~a~tgi~v~lGv~n~~l~~~a~~~~A~~wv~~~v~~ 100 (407)
..+|||.-...++ |..++.++++...+++.|=+..-+|...+.+++.|++|+.-|+. ...|..+++..+
T Consensus 56 kPfGVnl~~~~~~-~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s--------~~~A~~a~~~Ga-- 124 (320)
T cd04743 56 KPWGVGILGFVDT-ELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVPS--------PGLLKQFLENGA-- 124 (320)
T ss_pred CCeEEEEeccCCC-cchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeCC--------HHHHHHHHHcCC--
Confidence 4678887443332 33455667776677877776655666678899999999987773 445555444321
Q ss_pred hCCCceEEEEEecccc
Q 015411 101 YLPATKITCITVGNEV 116 (407)
Q Consensus 101 ~~p~~~I~~I~VGNEv 116 (407)
+. .|+-|.|.
T Consensus 125 ----D~--vVaqG~EA 134 (320)
T cd04743 125 ----RK--FIFEGREC 134 (320)
T ss_pred ----CE--EEEecCcC
Confidence 21 36668887
No 71
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=34.02 E-value=5.7e+02 Score=26.74 Aligned_cols=110 Identities=14% Similarity=0.146 Sum_probs=55.5
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCcccccchhhhhhhhhhhhhhcCCCeeeecCCCccccC
Q 015411 125 SGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFAYKG 204 (407)
Q Consensus 125 ~~~Ll~am~~v~~aL~~~gl~~~I~VsTa~~~~vl~~s~pPS~g~F~~~l~~~l~~~ldfL~~~~sp~~vNiyPyf~~~~ 204 (407)
.++...+++.+|+++. .+.+++..-. .+| |. -.+.+...++|+.+.+- =.+++|+|--+-.
T Consensus 279 ~~~~~~~v~~lr~~~~------gi~i~~d~Iv-----G~P---gE----T~ed~~~tl~~l~~l~~-~~i~~f~~sp~pG 339 (437)
T PRK14331 279 KEEYLEKIELLKEYIP------DITFSTDIIV-----GFP---TE----TEEDFEETLDVLKKVEF-EQVFSFKYSPRPG 339 (437)
T ss_pred HHHHHHHHHHHHHhCC------CCEEecCEEE-----ECC---CC----CHHHHHHHHHHHHhcCc-ceeeeeEecCCCC
Confidence 5777788888876531 3445544321 244 11 12345667788877652 3567776533222
Q ss_pred CCCccCcccccccCCCCcccCCCcchhhhHHHHHHHHHHHHHHHcCCCCccEEEeee
Q 015411 205 SPKQVSLDFVLFQPNQGIVDPASNLHYDNMLFAQIDAVYAALASLGYKKLLLHISET 261 (407)
Q Consensus 205 ~p~~i~l~yAlf~~~~~v~d~~~~~~y~nl~daqvDav~~Al~k~g~~~~~VvVtET 261 (407)
.| -|.+ ++ .+.+.....+...+.+-+-.-.....++.-....+|+|.|.
T Consensus 340 T~-----~~~~--~~-~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~g~~~~vlve~~ 388 (437)
T PRK14331 340 TP-----AAYM--EG-QEPDEVKTKRMNRLLELQKEITFKKALSYEGTVQEVLVEEE 388 (437)
T ss_pred cc-----hhhC--CC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEe
Confidence 11 1111 11 12222223455666665555444455554445678888654
No 72
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=32.46 E-value=2.4e+02 Score=28.13 Aligned_cols=116 Identities=15% Similarity=0.172 Sum_probs=59.5
Q ss_pred cCCeEEEEecc--c--ccccCC-CHHHHHHHHHHHhhhhCCCceEEEEEecccccccC-------CCCchhhHHHHHHHH
Q 015411 68 TGVEFTVSLGN--E--YLAKMR-DPDCAKAWIKSNVQAYLPATKITCITVGNEVLTFN-------DTSLSGCLLPAMESV 135 (407)
Q Consensus 68 tgi~v~lGv~n--~--~l~~~a-~~~~A~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~-------~~s~~~~Ll~am~~v 135 (407)
.++||++.|.. . ....++ ++...+. +.+++..++..-.+.+|-+==|-.... ..+....++.-|+.+
T Consensus 83 p~lkvl~siGG~~~s~~f~~~~~~~~~r~~-Fi~siv~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d~~~~~~ll~~L 161 (322)
T cd06548 83 PHLKILLSIGGWTWSGGFSDAAATEASRAK-FADSAVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKENFTLLLKEL 161 (322)
T ss_pred CCCEEEEEEeCCCCCCCchhHhCCHHHHHH-HHHHHHHHHHhcCCCeEEECCcCCCCCCCCCCCCChhHHHHHHHHHHHH
Confidence 56888777753 2 122232 4433223 334454444444566776643422110 012257789999999
Q ss_pred HHHHHhCCC--CCCeEEeeeeecccccccCCCCCcccc-cchhhhhhhhhhhhhhcCCCeeeecCCCcc
Q 015411 136 HTALVNLGL--DKQVSVTTAHSLGVLGSSYPPSAGAFR-KDLVDCITPILDFHVKTASPFLINAYPYFA 201 (407)
Q Consensus 136 ~~aL~~~gl--~~~I~VsTa~~~~vl~~s~pPS~g~F~-~~l~~~l~~~ldfL~~~~sp~~vNiyPyf~ 201 (407)
|++|.+.|. ..+..+|.+...... .+. -+ .+.|.+.+|| +.+-.|=|+.
T Consensus 162 r~~l~~~~~~~~~~~~Ls~av~~~~~---------~~~~~~-~~~l~~~vD~-------vnlMtYD~~g 213 (322)
T cd06548 162 REALDALGAETGRKYLLTIAAPAGPD---------KLDKLE-VAEIAKYLDF-------INLMTYDFHG 213 (322)
T ss_pred HHHHHHhhhccCCceEEEEEccCCHH---------HHhcCC-HHHHhhcCCE-------EEEEEeeccC
Confidence 999988651 112334443321111 010 01 2567788899 6666675553
No 73
>PF12365 DUF3649: Protein of unknown function (DUF3649) ; InterPro: IPR022109 This domain family is found in bacteria and eukaryotes, and is approximately 30 amino acids in length.
Probab=32.24 E-value=52 Score=21.55 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=17.9
Q ss_pred ccCccchhhh-hhHHHHHHHHHHHhcC
Q 015411 382 SATKARYEFV-GSVMLVLVFFLISLLL 407 (407)
Q Consensus 382 ~~~~~~~~~~-~~~~~~~~~~~~~~~~ 407 (407)
++.++.||.| |.+..-++++++..++
T Consensus 2 Fa~rsa~rAW~Gll~~a~~l~~~~~~l 28 (28)
T PF12365_consen 2 FAARSAWRAWLGLLLPAALLALLAWLL 28 (28)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHhC
Confidence 4567889988 5666666777766553
No 74
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=32.00 E-value=1e+02 Score=26.79 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=28.2
Q ss_pred hHHHHHHhhcCCCEEEec--c--------CC---hHHHHHHHhcCCeEE
Q 015411 38 ENVIPLVKSIGATRVKLY--D--------AD---PKVLKAFANTGVEFT 73 (407)
Q Consensus 38 ~~v~~llks~gi~~VRlY--~--------~d---~~vL~A~a~tgi~v~ 73 (407)
+++.+.++.+|++.|+++ . +. ..+|++++..||+|.
T Consensus 53 ~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~ 101 (114)
T TIGR03628 53 GRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 101 (114)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEE
Confidence 556677788999988877 3 23 579999999999975
No 75
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=31.20 E-value=2e+02 Score=28.67 Aligned_cols=79 Identities=13% Similarity=0.122 Sum_probs=41.4
Q ss_pred HHHHHHhcCCeEEEEeccccccc-CCCHHHHHHHHHHHhhhhCCCceEEEEEecccccccC--CCCchhhHHHHHHHHHH
Q 015411 61 VLKAFANTGVEFTVSLGNEYLAK-MRDPDCAKAWIKSNVQAYLPATKITCITVGNEVLTFN--DTSLSGCLLPAMESVHT 137 (407)
Q Consensus 61 vL~A~a~tgi~v~lGv~n~~l~~-~a~~~~A~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~--~~s~~~~Ll~am~~v~~ 137 (407)
-++.+++.|+||+|.+.-..-.. +.+...+ ..+.+++..++..-.+.+|=+==|--... .......++..++.+|+
T Consensus 65 ~i~~~q~~G~KVllSiGG~~~~~~~~~~~~~-~~fa~sl~~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~ 143 (312)
T cd02871 65 DIKALQAKGKKVLISIGGANGHVDLNHTAQE-DNFVDSIVAIIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQLKD 143 (312)
T ss_pred HHHHHHHCCCEEEEEEeCCCCccccCCHHHH-HHHHHHHHHHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHHHHH
Confidence 34566778999999886433222 2233322 23344444433333455555544432111 01124678888888888
Q ss_pred HHH
Q 015411 138 ALV 140 (407)
Q Consensus 138 aL~ 140 (407)
++.
T Consensus 144 ~~~ 146 (312)
T cd02871 144 HYG 146 (312)
T ss_pred HcC
Confidence 763
No 76
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=30.44 E-value=48 Score=33.33 Aligned_cols=219 Identities=17% Similarity=0.218 Sum_probs=108.1
Q ss_pred HHHHHHHhcCCeEE--EEeccccccc----C-C-CH-------HHHHHHHHHHhhhhCCC-ceEEEEEecccccccCC--
Q 015411 60 KVLKAFANTGVEFT--VSLGNEYLAK----M-R-DP-------DCAKAWIKSNVQAYLPA-TKITCITVGNEVLTFND-- 121 (407)
Q Consensus 60 ~vL~A~a~tgi~v~--lGv~n~~l~~----~-a-~~-------~~A~~wv~~~v~~~~p~-~~I~~I~VGNEvl~~~~-- 121 (407)
.+++-++..||+|- .=||-...+. . . ++ +....+|++-+..| .+ .+|...=|=||++....
T Consensus 63 ~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y-~~~g~i~~WDVvNE~i~~~~~~ 141 (320)
T PF00331_consen 63 AILDWARENGIKVRGHTLVWHSQTPDWVFNLANGSPDEKEELRARLENHIKTVVTRY-KDKGRIYAWDVVNEAIDDDGNP 141 (320)
T ss_dssp HHHHHHHHTT-EEEEEEEEESSSS-HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHHT-TTTTTESEEEEEES-B-TTSSS
T ss_pred HHHHHHHhcCcceeeeeEEEcccccceeeeccCCCcccHHHHHHHHHHHHHHHHhHh-ccccceEEEEEeeecccCCCcc
Confidence 56677778888774 3445443222 1 1 11 12244555544554 43 47999989999997643
Q ss_pred ----CCc------hhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCcccccchhhhhhhhhhhhhhcCCC
Q 015411 122 ----TSL------SGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASP 191 (407)
Q Consensus 122 ----~s~------~~~Ll~am~~v~~aL~~~gl~~~I~VsTa~~~~vl~~s~pPS~g~F~~~l~~~l~~~ldfL~~~~sp 191 (407)
.+. +..+..+.+-.|++..+ ++.---+ ++++.. .-+..+..+++.|.+.|-|
T Consensus 142 ~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~------a~L~~ND-y~~~~~-----------~k~~~~~~lv~~l~~~gvp 203 (320)
T PF00331_consen 142 GGLRDSPWYDALGPDYIADAFRAAREADPN------AKLFYND-YNIESP-----------AKRDAYLNLVKDLKARGVP 203 (320)
T ss_dssp SSBCTSHHHHHHTTCHHHHHHHHHHHHHTT------SEEEEEE-SSTTST-----------HHHHHHHHHHHHHHHTTHC
T ss_pred ccccCChhhhcccHhHHHHHHHHHHHhCCC------cEEEecc-ccccch-----------HHHHHHHHHHHHHHhCCCc
Confidence 111 24555667777776542 3322222 222211 1123455677777777766
Q ss_pred e-eeecCCCccccCCCCccCcccccccCCCCcccCCCcchhhhHHHHHHHHHHHHHHHcCCCCccEEEeeeccCCCCCCC
Q 015411 192 F-LINAYPYFAYKGSPKQVSLDFVLFQPNQGIVDPASNLHYDNMLFAQIDAVYAALASLGYKKLLLHISETGWPSKGDED 270 (407)
Q Consensus 192 ~-~vNiyPyf~~~~~p~~i~l~yAlf~~~~~v~d~~~~~~y~nl~daqvDav~~Al~k~g~~~~~VvVtETGWPS~G~~~ 270 (407)
| +|- ||. ..... +. .+.+..+|++..--+++|+|||--=.......
T Consensus 204 IdgIG--------------------~Q~---H~~~~----~~------~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~~~ 250 (320)
T PF00331_consen 204 IDGIG--------------------LQS---HFDAG----YP------PEQIWNALDRFASLGLPIHITELDVRDDDNPP 250 (320)
T ss_dssp S-EEE--------------------EEE---EEETT----SS------HHHHHHHHHHHHTTTSEEEEEEEEEESSSTTS
T ss_pred cceec--------------------hhh---ccCCC----CC------HHHHHHHHHHHHHcCCceEEEeeeecCCCCCc
Confidence 4 111 111 00000 00 23334444444444589999997433333211
Q ss_pred CCCCCHHHHHHHHHHHHHHHhccCCCCCCCCCCcc-EEEEEeecCC-CCCCCCCCCceeeecCCCCeeee
Q 015411 271 EAGATPENAKKYNGNLIKLISSKKGTPMRPNCDLN-IYVFALFNEN-LKPGPTSERNYGLFKPDGSPAYS 338 (407)
Q Consensus 271 ~~~As~~Na~~y~~~li~~~~~~~GTP~rp~~~~~-~y~F~~FDE~-wK~G~~~Er~wGlf~~d~~~ky~ 338 (407)
. ....+.|+.+.+.+++.+.+.. |. .+. +.+-.+.|.. |.+... -.+=+||+.|.+||-.
T Consensus 251 ~-~~~~~~qA~~~~~~~~~~~~~~-----~~-~v~git~Wg~~D~~sW~~~~~-~~~~~lfd~~~~~Kpa 312 (320)
T PF00331_consen 251 D-AEEEEAQAEYYRDFLTACFSHP-----PA-AVEGITWWGFTDGYSWRPDTP-PDRPLLFDEDYQPKPA 312 (320)
T ss_dssp C-HHHHHHHHHHHHHHHHHHHHTT-----HC-TEEEEEESSSBTTGSTTGGHS-EG--SSB-TTSBB-HH
T ss_pred c-hHHHHHHHHHHHHHHHHHHhCC-----cc-CCCEEEEECCCCCCcccCCCC-CCCCeeECCCcCCCHH
Confidence 0 2446778899999999887631 01 233 3444455533 554311 1234689999998843
No 77
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=30.21 E-value=97 Score=26.39 Aligned_cols=37 Identities=24% Similarity=0.425 Sum_probs=28.6
Q ss_pred hHHHHHHhhcCCCEEEecc--CC---hHHHHHHHhcCCeEEE
Q 015411 38 ENVIPLVKSIGATRVKLYD--AD---PKVLKAFANTGVEFTV 74 (407)
Q Consensus 38 ~~v~~llks~gi~~VRlY~--~d---~~vL~A~a~tgi~v~l 74 (407)
+++++.++.+|++.|+++= .. ..+|++++..|++|.-
T Consensus 50 ~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~ 91 (108)
T TIGR03632 50 EDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTS 91 (108)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 4456777889999999883 33 5799999999998653
No 78
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=29.97 E-value=2.1e+02 Score=28.05 Aligned_cols=76 Identities=17% Similarity=0.208 Sum_probs=39.2
Q ss_pred HhcCCeEEEEecccc-----cccCC-CHHHHHHHHHHHhhhhCCCceEEEEEecccccccC-CCCchhhHHHHHHHHHHH
Q 015411 66 ANTGVEFTVSLGNEY-----LAKMR-DPDCAKAWIKSNVQAYLPATKITCITVGNEVLTFN-DTSLSGCLLPAMESVHTA 138 (407)
Q Consensus 66 a~tgi~v~lGv~n~~-----l~~~a-~~~~A~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~-~~s~~~~Ll~am~~v~~a 138 (407)
++.|+||++.|.... ...+. ++... .-+.++|..++..-.+.+|-+==|-.... +......+...|+.+|.+
T Consensus 70 ~~~~~kvllsigg~~~~~~~~~~~~~~~~~r-~~f~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~~ 148 (343)
T PF00704_consen 70 KNPGVKVLLSIGGWGMSSDGFSQLLSNPAKR-QNFINNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRKA 148 (343)
T ss_dssp HHTT-EEEEEEEETTSSHHHHHHHHHSHHHH-HHHHHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHHH
T ss_pred hccCceEEEEeccccccccccccccccHHHH-HHHHHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhhh
Confidence 356999988776542 12222 33222 22333333332222466666633443221 112367889999999999
Q ss_pred HHhC
Q 015411 139 LVNL 142 (407)
Q Consensus 139 L~~~ 142 (407)
|++.
T Consensus 149 l~~~ 152 (343)
T PF00704_consen 149 LKRA 152 (343)
T ss_dssp HHHH
T ss_pred hccc
Confidence 9885
No 79
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=29.57 E-value=93 Score=31.81 Aligned_cols=77 Identities=22% Similarity=0.186 Sum_probs=52.1
Q ss_pred hHHHHHHHhcCCeEEEEecccccccCCCHHHHHHHHHHHhhhhCCCceEEEEEecccccccCCCCchhhHHHHHHHHHHH
Q 015411 59 PKVLKAFANTGVEFTVSLGNEYLAKMRDPDCAKAWIKSNVQAYLPATKITCITVGNEVLTFNDTSLSGCLLPAMESVHTA 138 (407)
Q Consensus 59 ~~vL~A~a~tgi~v~lGv~n~~l~~~a~~~~A~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~s~~~~Ll~am~~v~~a 138 (407)
..||+++..+|-.+.+|=.-. +.+ +++.|.+|+...+..++ ..|.+|+--|.-..+ -+-++
T Consensus 175 m~VLkp~idsGkik~~Ge~~~--d~W-~ps~Aq~~men~lta~~--~~vdaVvA~nDgtag--------------GaI~a 235 (341)
T COG4213 175 MKVLKPLIDSGKIKVVGEQWT--DGW-LPSNAQQIMENLLTANY--NDIDAVVAPNDGTAG--------------GAIAA 235 (341)
T ss_pred HHHHHHHhhCCceEEeeeccc--ccc-CHHHHHHHHHHHHhccc--CceeEEEcCCCchhH--------------HHHHH
Confidence 479999888884444664322 233 58889999988888775 348888776652221 12356
Q ss_pred HHhCCCCCCeEEeeee
Q 015411 139 LVNLGLDKQVSVTTAH 154 (407)
Q Consensus 139 L~~~gl~~~I~VsTa~ 154 (407)
|+..||++++|||=-|
T Consensus 236 L~a~Gl~g~vpVsGQD 251 (341)
T COG4213 236 LKAQGLAGKVPVSGQD 251 (341)
T ss_pred HHhcccCCCCcccCcc
Confidence 8889999999987544
No 80
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=29.31 E-value=1.3e+02 Score=26.51 Aligned_cols=43 Identities=14% Similarity=0.326 Sum_probs=31.7
Q ss_pred HhHHHHHHhhcCCCEEEeccC---------------------C--hHHHHHHHhcCCeEEEEeccc
Q 015411 37 PENVIPLVKSIGATRVKLYDA---------------------D--PKVLKAFANTGVEFTVSLGNE 79 (407)
Q Consensus 37 ~~~v~~llks~gi~~VRlY~~---------------------d--~~vL~A~a~tgi~v~lGv~n~ 79 (407)
|++.++.||..+++.|-+|.- | .++++|+++.||+|++=+-..
T Consensus 2 ~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 2 PEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 567777888777777777542 1 367888999999998877643
No 81
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=28.58 E-value=1.3e+02 Score=28.10 Aligned_cols=117 Identities=19% Similarity=0.227 Sum_probs=64.5
Q ss_pred HHHHHHHHhhhhCCCceEEEEEecccccccCCCCchhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCcc
Q 015411 90 AKAWIKSNVQAYLPATKITCITVGNEVLTFNDTSLSGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGA 169 (407)
Q Consensus 90 A~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~s~~~~Ll~am~~v~~aL~~~gl~~~I~VsTa~~~~vl~~s~pPS~g~ 169 (407)
...|+.+.+..+ |...+....+= ....-.+++.+.+++...|+.+ |++.+.... ++|.
T Consensus 57 ~n~~~~~~~~~~-~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~G-v~l~~~~~~------~~~~--- 114 (273)
T PF04909_consen 57 FNDWLVELAAKH-PDRFIGFAAIP-----------PPDPEDAVEELERALQELGFRG-VKLHPDLGG------FDPD--- 114 (273)
T ss_dssp HHHHHHHHHHHS-TTTEEEEEEET-----------TTSHHHHHHHHHHHHHTTTESE-EEEESSETT------CCTT---
T ss_pred HHHHHHHHHHHc-CCCEEEEEEec-----------CCCchhHHHHHHHhccccceee-eEecCCCCc------cccc---
Confidence 355666666665 43334333321 1123467888888888888864 776653311 1111
Q ss_pred cccchhhhh-hhhhhhhhhcCCCeeeecC-CCccccCCCCccCcccccccCCCCcccCCCcchhhhHHHHHHHHHHHHHH
Q 015411 170 FRKDLVDCI-TPILDFHVKTASPFLINAY-PYFAYKGSPKQVSLDFVLFQPNQGIVDPASNLHYDNMLFAQIDAVYAALA 247 (407)
Q Consensus 170 F~~~l~~~l-~~~ldfL~~~~sp~~vNiy-Pyf~~~~~p~~i~l~yAlf~~~~~v~d~~~~~~y~nl~daqvDav~~Al~ 247 (407)
.+.. .++.+.+++.+-|+.+|+- +.+.. ......+...+...++
T Consensus 115 -----~~~~~~~~~~~~~~~~~pv~~H~g~~~~~~-----------------------------~~~~~~~~~~~~~~~~ 160 (273)
T PF04909_consen 115 -----DPRLDDPIFEAAEELGLPVLIHTGMTGFPD-----------------------------APSDPADPEELEELLE 160 (273)
T ss_dssp -----SGHCHHHHHHHHHHHT-EEEEEESHTHHHH-----------------------------HHHHHHHHHHHTTHHH
T ss_pred -----cHHHHHHHHHHHHhhccceeeeccccchhh-----------------------------hhHHHHHHHHHHHHHH
Confidence 1223 4788889999988887753 11100 0011112222333334
Q ss_pred HcCCCCccEEEeeeccC
Q 015411 248 SLGYKKLLLHISETGWP 264 (407)
Q Consensus 248 k~g~~~~~VvVtETGWP 264 (407)
+ +|+++|++.+.|+|
T Consensus 161 ~--~P~l~ii~~H~G~~ 175 (273)
T PF04909_consen 161 R--FPDLRIILAHLGGP 175 (273)
T ss_dssp H--STTSEEEESGGGTT
T ss_pred H--hcCCeEEEecCccc
Confidence 3 78999999999999
No 82
>PRK07198 hypothetical protein; Validated
Probab=28.22 E-value=53 Score=34.47 Aligned_cols=37 Identities=16% Similarity=0.294 Sum_probs=32.7
Q ss_pred HHHHhhcCCCEE-EeccCChHHHHHHHhcCCeEEEEec
Q 015411 41 IPLVKSIGATRV-KLYDADPKVLKAFANTGVEFTVSLG 77 (407)
Q Consensus 41 ~~llks~gi~~V-RlY~~d~~vL~A~a~tgi~v~lGv~ 77 (407)
.++|+.+||++| |+.+.++.=+.++.+.||+|.==++
T Consensus 338 AQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVp 375 (418)
T PRK07198 338 PDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVP 375 (418)
T ss_pred HHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEec
Confidence 579999999999 9999999888899999999985554
No 83
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=28.19 E-value=89 Score=33.08 Aligned_cols=38 Identities=16% Similarity=0.249 Sum_probs=28.6
Q ss_pred HHHHhhcCCCEEEeccCC------hHHHHHHHhcCCeEEEEecc
Q 015411 41 IPLVKSIGATRVKLYDAD------PKVLKAFANTGVEFTVSLGN 78 (407)
Q Consensus 41 ~~llks~gi~~VRlY~~d------~~vL~A~a~tgi~v~lGv~n 78 (407)
++....+|++.+|+||+- ...++|++++|.++...+-.
T Consensus 104 v~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~Y 147 (472)
T COG5016 104 VEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISY 147 (472)
T ss_pred HHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEe
Confidence 344456899999999974 45788889999877666643
No 84
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=28.15 E-value=1.8e+02 Score=24.69 Aligned_cols=110 Identities=19% Similarity=0.244 Sum_probs=56.5
Q ss_pred HHHhhcCCCEEEeccCC----------hHHHHHHHhcCCeEEEEecccccccCCCHHHHHHHHHHHhhhhCCCceEEEEE
Q 015411 42 PLVKSIGATRVKLYDAD----------PKVLKAFANTGVEFTVSLGNEYLAKMRDPDCAKAWIKSNVQAYLPATKITCIT 111 (407)
Q Consensus 42 ~llks~gi~~VRlY~~d----------~~vL~A~a~tgi~v~lGv~n~~l~~~a~~~~A~~wv~~~v~~~~p~~~I~~I~ 111 (407)
+-|.+.|.++|-+-... ....+++++.|++...-.................|+++. .| ++|+
T Consensus 2 ~~L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~p----daii 73 (160)
T PF13377_consen 2 DYLIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSEDAREAQLLWLRRL----RP----DAII 73 (160)
T ss_dssp HHHHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHHHHHHHHHHHHHTC----SS----SEEE
T ss_pred hHHHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcchhHHHHHHHHHhcC----CC----cEEE
Confidence 34555688888877633 125567778898854433322111100011122355332 23 3888
Q ss_pred ecccccccCCCCchhhHHHHHHHHHHHHHhCCC--CCCeEEeeeeecccccccCCCCCcccccch
Q 015411 112 VGNEVLTFNDTSLSGCLLPAMESVHTALVNLGL--DKQVSVTTAHSLGVLGSSYPPSAGAFRKDL 174 (407)
Q Consensus 112 VGNEvl~~~~~s~~~~Ll~am~~v~~aL~~~gl--~~~I~VsTa~~~~vl~~s~pPS~g~F~~~l 174 (407)
+.|+.+. . .+..+|++.|+ .+++.|-+-+........+| ....+..+.
T Consensus 74 ~~~~~~a-------~-------~~~~~l~~~g~~vP~di~vv~~~~~~~~~~~~p-~it~i~~~~ 123 (160)
T PF13377_consen 74 CSNDRLA-------L-------GVLRALRELGIRVPQDISVVSFDDSPLLEFFSP-PITTIDQDP 123 (160)
T ss_dssp ESSHHHH-------H-------HHHHHHHHTTSCTTTTSEEEEESSSGHHHCSSS-TSEEEEE-H
T ss_pred EcCHHHH-------H-------HHHHHHHHcCCcccccccEEEecCcHHHHHHcC-CCceecCCH
Confidence 8886652 2 23355666675 46788888776555433334 445555444
No 85
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=27.98 E-value=1.4e+02 Score=25.94 Aligned_cols=47 Identities=17% Similarity=0.328 Sum_probs=37.9
Q ss_pred CCCCCHhHHHHHHhhcCCCEEEeccCC-----hHHHHHHHhcCCeEEEEecc
Q 015411 32 NNLPTPENVIPLVKSIGATRVKLYDAD-----PKVLKAFANTGVEFTVSLGN 78 (407)
Q Consensus 32 ~nlps~~~v~~llks~gi~~VRlY~~d-----~~vL~A~a~tgi~v~lGv~n 78 (407)
+-..++++.++..++.|++.|=+=|-+ +...+.++..||++++|+-.
T Consensus 13 dg~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E~ 64 (175)
T PF02811_consen 13 DGKDSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVEI 64 (175)
T ss_dssp TSSSSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEee
Confidence 334589999999999999988888765 45666677799999999986
No 86
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=27.39 E-value=5.5e+02 Score=25.20 Aligned_cols=106 Identities=18% Similarity=0.280 Sum_probs=59.2
Q ss_pred CCHhHHHHHHhhcCCCEEEecc----------CChHHHHHH-HhcCCeEEEEecccccccCC--CHH-HHHHHHHHHhhh
Q 015411 35 PTPENVIPLVKSIGATRVKLYD----------ADPKVLKAF-ANTGVEFTVSLGNEYLAKMR--DPD-CAKAWIKSNVQA 100 (407)
Q Consensus 35 ps~~~v~~llks~gi~~VRlY~----------~d~~vL~A~-a~tgi~v~lGv~n~~l~~~a--~~~-~A~~wv~~~v~~ 100 (407)
-+.++.+.+.|.+|++.|.|-+ +++.-++++ .++|+.++ .| +.+..++ +++ .++ ...+..
T Consensus 17 l~v~affa~ak~lg~s~VeiRndl~~~~I~dg~p~a~vka~Aek~Gl~Iv-SI--NAlypFn~wt~~~~a~---a~~la~ 90 (272)
T COG4130 17 LSVEAFFALAKRLGLSKVEIRNDLPSNAIADGTPAAEVKALAEKAGLTIV-SI--NALYPFNEWTEERVAE---ARGLAD 90 (272)
T ss_pred CCHHHHHHHHHHcCcceeEEecCCCcccccCCCCHHHHHHHHHHcCcEEE-Ee--eccccccccChHHHHH---HHHHHH
Confidence 3567888999999999998873 224445554 47888753 22 2233332 111 111 123344
Q ss_pred hCCCceEEEEEeccccccc----CCCCchhhHHHHHHHHHHHHHhCCCCCCe
Q 015411 101 YLPATKITCITVGNEVLTF----NDTSLSGCLLPAMESVHTALVNLGLDKQV 148 (407)
Q Consensus 101 ~~p~~~I~~I~VGNEvl~~----~~~s~~~~Ll~am~~v~~aL~~~gl~~~I 148 (407)
|..+..-++++. =.++. ++..-...|+.|++.+|-.|.+.|+.+-|
T Consensus 91 yA~acGA~aLvl--cPlNd~s~~~~~vr~~~lv~AlkaLkpil~~~gi~GLV 140 (272)
T COG4130 91 YAAACGAKALVL--CPLNDGSWPGTAVRREDLVEALKALKPILDEYGITGLV 140 (272)
T ss_pred HHHhcCCceEEE--EeccCCCCCCcccchHHHHHHHHHhhHHHHHhCccccc
Confidence 432221112111 01222 12223688999999999999999987644
No 87
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=27.17 E-value=5.5e+02 Score=24.37 Aligned_cols=49 Identities=14% Similarity=0.130 Sum_probs=35.5
Q ss_pred EEecCCCCCCCCHhHHHHHHhhcCCCEEEeccC---C-hHHHHHHHhcCCeEEE
Q 015411 25 INYGQIANNLPTPENVIPLVKSIGATRVKLYDA---D-PKVLKAFANTGVEFTV 74 (407)
Q Consensus 25 VnYg~~~~nlps~~~v~~llks~gi~~VRlY~~---d-~~vL~A~a~tgi~v~l 74 (407)
+|-+..-..+ +.++.++.++..||+.|-+... + .++.+.++.+||++..
T Consensus 6 ~~~~~~~~~~-~l~~~l~~~a~~Gf~~VEl~~~~~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 6 ANLSMLFGEY-DFLARFEKAAQCGFRGVEFMFPYDYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred eeeehhccCC-CHHHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHHHcCCcEEE
Confidence 4444433344 3688899999999999998764 3 4577778899999975
No 88
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=27.14 E-value=1.1e+02 Score=33.93 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=29.9
Q ss_pred HhHHH----HHHhhcCCCEEEeccCC------hHHHHHHHhcCCeEEEEecc
Q 015411 37 PENVI----PLVKSIGATRVKLYDAD------PKVLKAFANTGVEFTVSLGN 78 (407)
Q Consensus 37 ~~~v~----~llks~gi~~VRlY~~d------~~vL~A~a~tgi~v~lGv~n 78 (407)
|++|+ +..+.+|++.+|+||+- ...++++++.|..+...+--
T Consensus 94 ~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~y 145 (596)
T PRK14042 94 ADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICY 145 (596)
T ss_pred ChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEe
Confidence 45554 44566899999999864 34567778899887776544
No 89
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=26.76 E-value=1.1e+02 Score=32.64 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=35.9
Q ss_pred HhHHHHHHhhcCCCEEEe-------ccC-----C-------hHHHHHHHhcCCeEEEEecccccc
Q 015411 37 PENVIPLVKSIGATRVKL-------YDA-----D-------PKVLKAFANTGVEFTVSLGNEYLA 82 (407)
Q Consensus 37 ~~~v~~llks~gi~~VRl-------Y~~-----d-------~~vL~A~a~tgi~v~lGv~n~~l~ 82 (407)
-+++++||+++|++.-|+ +-. + .+++.++.+.||+-+|.+.--+++
T Consensus 55 y~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP 119 (467)
T TIGR01233 55 YPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTP 119 (467)
T ss_pred HHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 478999999999887764 311 2 368899999999999999865554
No 90
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=26.74 E-value=1.4e+02 Score=26.66 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=28.3
Q ss_pred hHHHHHHhhcCCCEEEec--c--------CC---hHHHHHHHhcCCeEE
Q 015411 38 ENVIPLVKSIGATRVKLY--D--------AD---PKVLKAFANTGVEFT 73 (407)
Q Consensus 38 ~~v~~llks~gi~~VRlY--~--------~d---~~vL~A~a~tgi~v~ 73 (407)
+++.+.++.+|++.|+++ + .. ..+|++++..|++|.
T Consensus 60 e~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~ 108 (132)
T PRK09607 60 EKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 108 (132)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEE
Confidence 456677888999988887 3 23 479999999999975
No 91
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.70 E-value=4e+02 Score=24.71 Aligned_cols=127 Identities=12% Similarity=0.083 Sum_probs=57.7
Q ss_pred HhHHHHHHhhcCCCEEEeccCCh---------HHHHHHHhcCCeEEEE--ecccccccCC-CHHHHHHHHHHHhhhhCCC
Q 015411 37 PENVIPLVKSIGATRVKLYDADP---------KVLKAFANTGVEFTVS--LGNEYLAKMR-DPDCAKAWIKSNVQAYLPA 104 (407)
Q Consensus 37 ~~~v~~llks~gi~~VRlY~~d~---------~vL~A~a~tgi~v~lG--v~n~~l~~~a-~~~~A~~wv~~~v~~~~p~ 104 (407)
....++.|...|.++|=+..... -..++++..|+++.+- .+.....+.. ....+.+|++++ +
T Consensus 97 g~~~~~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~- 170 (265)
T cd01543 97 GRMAAEHFLERGFRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEEEQEELAQWLQSL-----P- 170 (265)
T ss_pred HHHHHHHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCccccccccHHHHHHHHHHHHhcC-----C-
Confidence 34556666667777776654331 1234556678776211 1111011111 122233343321 2
Q ss_pred ceEEEEEecccccccCCCCchhhHHHHHHHHHHHHHhCCC--CCCeEEeeeeecccccccCCCCCcccccchhhhhhhhh
Q 015411 105 TKITCITVGNEVLTFNDTSLSGCLLPAMESVHTALVNLGL--DKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPIL 182 (407)
Q Consensus 105 ~~I~~I~VGNEvl~~~~~s~~~~Ll~am~~v~~aL~~~gl--~~~I~VsTa~~~~vl~~s~pPS~g~F~~~l~~~l~~~l 182 (407)
.+++|...|+.+. +. +.++|++.|+ .++|.|.+-+....+..-..|.-.....+....-+..+
T Consensus 171 -~~~ai~~~~d~~a----------~g----~~~~l~~~g~~vp~di~vigfd~~~~~~~~~~~~ltti~~~~~~~g~~a~ 235 (265)
T cd01543 171 -KPVGIFACTDARA----------RQ----LLEACRRAGIAVPEEVAVLGVDNDELICELSRPPLSSVEQNAERIGYEAA 235 (265)
T ss_pred -CCcEEEecChHHH----------HH----HHHHHHHhCCCCCCceEEEeeCCchhhhccCCCCCceeecCHHHHHHHHH
Confidence 3567777665542 11 2344555665 46788777775543222223434444444333333344
Q ss_pred hh
Q 015411 183 DF 184 (407)
Q Consensus 183 df 184 (407)
+.
T Consensus 236 ~~ 237 (265)
T cd01543 236 KL 237 (265)
T ss_pred HH
Confidence 43
No 92
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=26.59 E-value=84 Score=33.20 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=57.3
Q ss_pred ChHHHHHHHhcCCeEEEEecccc--cccCC--------CHHHHHHHHHHHhhhhCCCceEEEEEecccccccCCCCchhh
Q 015411 58 DPKVLKAFANTGVEFTVSLGNEY--LAKMR--------DPDCAKAWIKSNVQAYLPATKITCITVGNEVLTFNDTSLSGC 127 (407)
Q Consensus 58 d~~vL~A~a~tgi~v~lGv~n~~--l~~~a--------~~~~A~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~s~~~~ 127 (407)
+..+++..+..+++.++++-|.. ..... +.+.+.+-+.+++..-+....+++|.+.=|-+...| -+.
T Consensus 149 ~~~~~~~~~~~~i~~~~~iSN~~~~~~~f~~ela~~lL~net~~~~~i~~ii~~l~~~Gyrgv~iDfE~v~~~D---R~~ 225 (423)
T COG3858 149 NENVIEIAQCRKIKPVPGISNGTRPGANFGGELAQLLLNNETAKNRLINNIITLLDARGYRGVNIDFENVGPGD---REL 225 (423)
T ss_pred CcchhhhhhhcccceeEEEecCCccccccchHHHHHHHhcHHHHHHHHHHHHHHHHhcCcccEEechhhCCHHH---HHH
Confidence 35688888889999999999876 22221 112232323333333334456888999888887655 455
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 015411 128 LLPAMESVHTALVNLGLD 145 (407)
Q Consensus 128 Ll~am~~v~~aL~~~gl~ 145 (407)
+=-.|++++.+|.+.|+.
T Consensus 226 yt~flR~~r~~l~~~G~~ 243 (423)
T COG3858 226 YTDFLRQVRDALHSGGYT 243 (423)
T ss_pred HHHHHHHHHHHhccCCeE
Confidence 667799999999998874
No 93
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=26.12 E-value=54 Score=34.56 Aligned_cols=21 Identities=19% Similarity=0.142 Sum_probs=17.3
Q ss_pred hhhHHHHHHHHHHHHHhCCCC
Q 015411 125 SGCLLPAMESVHTALVNLGLD 145 (407)
Q Consensus 125 ~~~Ll~am~~v~~aL~~~gl~ 145 (407)
....+.-++.+.+.|.++||.
T Consensus 262 ~~~~~~~~~~~~~~L~~~Gy~ 282 (453)
T PRK13347 262 AEERLRQARAVADRLLAAGYV 282 (453)
T ss_pred HHHHHHHHHHHHHHHHHCCCE
Confidence 456677788899999999995
No 94
>CHL00041 rps11 ribosomal protein S11
Probab=26.02 E-value=1.5e+02 Score=25.53 Aligned_cols=36 Identities=25% Similarity=0.402 Sum_probs=27.3
Q ss_pred hHHHHHHhhcCCCEEEecc--C--C-hHHHHHHHhcCCeEE
Q 015411 38 ENVIPLVKSIGATRVKLYD--A--D-PKVLKAFANTGVEFT 73 (407)
Q Consensus 38 ~~v~~llks~gi~~VRlY~--~--d-~~vL~A~a~tgi~v~ 73 (407)
+++++.++.+|++.|+++= . . ..++++++..|++|.
T Consensus 63 ~~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~ 103 (116)
T CHL00041 63 ENAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLS 103 (116)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 4455677778999888883 2 2 579999999999864
No 95
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=25.90 E-value=1.8e+02 Score=31.08 Aligned_cols=46 Identities=15% Similarity=0.262 Sum_probs=35.8
Q ss_pred HhHHHHHHhhcCCCEEEe-------cc------CC-------hHHHHHHHhcCCeEEEEecccccc
Q 015411 37 PENVIPLVKSIGATRVKL-------YD------AD-------PKVLKAFANTGVEFTVSLGNEYLA 82 (407)
Q Consensus 37 ~~~v~~llks~gi~~VRl-------Y~------~d-------~~vL~A~a~tgi~v~lGv~n~~l~ 82 (407)
-+++++|||++|++.-|+ +- .+ .+++.++.+.||+-+|.++--+++
T Consensus 75 y~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP 140 (478)
T PRK09593 75 YKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCP 140 (478)
T ss_pred hHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCC
Confidence 478999999999887775 31 13 368899999999999999765544
No 96
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=25.32 E-value=2e+02 Score=23.04 Aligned_cols=48 Identities=10% Similarity=0.068 Sum_probs=30.9
Q ss_pred CceEEEEEeccc-ccccC-------CCCchhhHHHHHHHHHHHHHhCCCCCCeEEeee
Q 015411 104 ATKITCITVGNE-VLTFN-------DTSLSGCLLPAMESVHTALVNLGLDKQVSVTTA 153 (407)
Q Consensus 104 ~~~I~~I~VGNE-vl~~~-------~~s~~~~Ll~am~~v~~aL~~~gl~~~I~VsTa 153 (407)
..+|.+-=|+|| ..... .....+.+.+.|+++-+++|+..= ..|||+.
T Consensus 8 ~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP--~~pvt~g 63 (88)
T PF12876_consen 8 DPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDP--SQPVTSG 63 (88)
T ss_dssp GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-T--TS-EE--
T ss_pred CCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCC--CCcEEee
Confidence 468999999999 55111 111257899999999999998775 4577654
No 97
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=25.18 E-value=1.3e+02 Score=32.27 Aligned_cols=39 Identities=26% Similarity=0.391 Sum_probs=28.2
Q ss_pred HHHHHhhcCCCEEEeccCC------hHHHHHHHhcCCeEEEEecc
Q 015411 40 VIPLVKSIGATRVKLYDAD------PKVLKAFANTGVEFTVSLGN 78 (407)
Q Consensus 40 v~~llks~gi~~VRlY~~d------~~vL~A~a~tgi~v~lGv~n 78 (407)
.++..+.+|++.+|+||.- ...++++++.|..+.+.+--
T Consensus 110 fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~y 154 (468)
T PRK12581 110 FISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAY 154 (468)
T ss_pred HHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEE
Confidence 3556677899999999864 34566778899886655543
No 98
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=24.02 E-value=59 Score=33.36 Aligned_cols=142 Identities=23% Similarity=0.314 Sum_probs=75.9
Q ss_pred ecCCCCCCCCHhH---HHHHHhhcCCCEEEeccC------------ChHHHHHHHhcCCeEEE--------Eeccccccc
Q 015411 27 YGQIANNLPTPEN---VIPLVKSIGATRVKLYDA------------DPKVLKAFANTGVEFTV--------SLGNEYLAK 83 (407)
Q Consensus 27 Yg~~~~nlps~~~---v~~llks~gi~~VRlY~~------------d~~vL~A~a~tgi~v~l--------Gv~n~~l~~ 83 (407)
|.|.|=| |+++| +++.+++. +..-+||. |.-.++-+-..|+++++ |++|+....
T Consensus 188 hNPTGmD-PT~EQW~qia~vik~k--~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNfGlYneRvGn 264 (410)
T KOG1412|consen 188 HNPTGMD-PTREQWKQIADVIKSK--NLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKNFGLYNERVGN 264 (410)
T ss_pred cCCCCCC-CCHHHHHHHHHHHHhc--CceeeeehhhcccccCCccccHHHHHHHHhcCCeEEEEhhhhhhcccccccccc
Confidence 6666666 77776 56677765 35555643 24477888888998886 677775544
Q ss_pred CC---CHHHHHHHHHHHhhhh------C-CC--ceEEEEEeccccccc------CCCCchhhHHHHHHHHHHHHHhCCCC
Q 015411 84 MR---DPDCAKAWIKSNVQAY------L-PA--TKITCITVGNEVLTF------NDTSLSGCLLPAMESVHTALVNLGLD 145 (407)
Q Consensus 84 ~a---~~~~A~~wv~~~v~~~------~-p~--~~I~~I~VGNEvl~~------~~~s~~~~Ll~am~~v~~aL~~~gl~ 145 (407)
+. +..+...-|+..+... . |+ .+|. -|+|.. +..+ ...+...|++.|++|++.
T Consensus 265 ltvv~~n~a~i~~v~SQl~lviR~~~SNPPAyGArIV-----~kvL~tP~lre~W~~s-ik~MssRI~~MR~aLrd~--- 335 (410)
T KOG1412|consen 265 LTVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGARIV-----HKVLSTPELREQWIQS-IKTMSSRIKKMRTALRDH--- 335 (410)
T ss_pred eEEEecChhHHHHHHHHHHHHHhhccCCCcchhhHHH-----HHHhcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHH---
Confidence 42 2111111122222111 0 11 1121 133322 1112 455667788889998753
Q ss_pred CCeEEeeeeecccccccCCCCCcccc-cchhhhhhhhhhhhhhc
Q 015411 146 KQVSVTTAHSLGVLGSSYPPSAGAFR-KDLVDCITPILDFHVKT 188 (407)
Q Consensus 146 ~~I~VsTa~~~~vl~~s~pPS~g~F~-~~l~~~l~~~ldfL~~~ 188 (407)
-+...|+-+|+.+.+. .|.|. -.|.+ ..+|+|.++
T Consensus 336 -L~aL~TPGtWDHI~~Q----iGMFSyTGLtp---~qV~~li~~ 371 (410)
T KOG1412|consen 336 -LVALKTPGTWDHITQQ----IGMFSYTGLTP---AQVDHLIEN 371 (410)
T ss_pred -HHhcCCCCcHHHHHhh----ccceeecCCCH---HHHHHHHHh
Confidence 2568899999887552 34553 12222 356775443
No 99
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=24.00 E-value=1.9e+02 Score=30.96 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=35.7
Q ss_pred HhHHHHHHhhcCCCEEEe-------cc------CC-------hHHHHHHHhcCCeEEEEecccccc
Q 015411 37 PENVIPLVKSIGATRVKL-------YD------AD-------PKVLKAFANTGVEFTVSLGNEYLA 82 (407)
Q Consensus 37 ~~~v~~llks~gi~~VRl-------Y~------~d-------~~vL~A~a~tgi~v~lGv~n~~l~ 82 (407)
-++++++|+.+|++..|+ +- .+ .+++.++.+.||+.+|.+.--+++
T Consensus 73 y~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P 138 (474)
T PRK09852 73 YKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVP 138 (474)
T ss_pred hHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCC
Confidence 378999999999887765 21 13 368899999999999999865554
No 100
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=23.83 E-value=1.5e+02 Score=28.08 Aligned_cols=39 Identities=13% Similarity=0.373 Sum_probs=34.9
Q ss_pred HHHHhhcCCCEEEeccCChHHHHHHHhcCCeEEEEeccc
Q 015411 41 IPLVKSIGATRVKLYDADPKVLKAFANTGVEFTVSLGNE 79 (407)
Q Consensus 41 ~~llks~gi~~VRlY~~d~~vL~A~a~tgi~v~lGv~n~ 79 (407)
.++|+-+||++||+-..+|.=..++.+.||+|.=-+++.
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~~ 171 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLI 171 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeecC
Confidence 578999999999999999988888999999998888865
No 101
>PRK13912 nuclease NucT; Provisional
Probab=23.56 E-value=1.8e+02 Score=26.51 Aligned_cols=73 Identities=16% Similarity=0.328 Sum_probs=42.5
Q ss_pred CcchhHHHHHHHHhhhccccCceeEEecCCCCCCCCHhHHHHHHhhcCCCEEEe--ccC-ChHH---HHHHHhcCCeEEE
Q 015411 1 MNEWLFTYFCVGLLSHVKIGTSIGINYGQIANNLPTPENVIPLVKSIGATRVKL--YDA-DPKV---LKAFANTGVEFTV 74 (407)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~GVnYg~~~~nlps~~~v~~llks~gi~~VRl--Y~~-d~~v---L~A~a~tgi~v~l 74 (407)
||+..+..+++|++-.+.+. .=+.+.|..+.-. .+.+++++++.. +.|++ |.- ++.+ |..+++.|++|-|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~--~~~~~~P~~~~~~-~~~l~~~I~~Ak-~sI~i~~Y~~~~~~i~~aL~~Aa~RGV~VrI 77 (177)
T PRK13912 2 MKKIVGVFLLVGCLGVLQAK--SSLYFLPYEQKDA-LNKLVSLISNAR-SSIKIAIYSFTHKDIAKALKSAAKRGVKISI 77 (177)
T ss_pred hhhHHHHHHHHHhhhhhhcc--ceEEECCCChHHH-HHHHHHHHHhcc-cEEEEEEEEEchHHHHHHHHHHHHCCCEEEE
Confidence 78888888888876554433 4477777653211 355778887643 34443 432 3443 4444567877655
Q ss_pred Eec
Q 015411 75 SLG 77 (407)
Q Consensus 75 Gv~ 77 (407)
=+.
T Consensus 78 lld 80 (177)
T PRK13912 78 IYD 80 (177)
T ss_pred EEe
Confidence 443
No 102
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=23.52 E-value=1.3e+02 Score=23.58 Aligned_cols=40 Identities=30% Similarity=0.557 Sum_probs=28.1
Q ss_pred HHHHHHHhhhhCCCceEEEEEecccccccCC--CCchhhHHHHHHHHHHHHHhC
Q 015411 91 KAWIKSNVQAYLPATKITCITVGNEVLTFND--TSLSGCLLPAMESVHTALVNL 142 (407)
Q Consensus 91 ~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~--~s~~~~Ll~am~~v~~aL~~~ 142 (407)
..|+++||.- |+|.++.++ .+-.+.|+|+++..++.++..
T Consensus 14 i~WLedNi~~------------es~iiFDNded~tdSa~llp~ie~a~~~~r~l 55 (65)
T PF06117_consen 14 IAWLEDNIDC------------ESDIIFDNDEDKTDSAALLPAIEQARADVRPL 55 (65)
T ss_pred HHHHHcccCC------------CCCeeecCCCcccchHHHHHHHHHHHHHHHHH
Confidence 5688887643 556666543 233688999999999888753
No 103
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=23.07 E-value=1.9e+02 Score=27.32 Aligned_cols=51 Identities=18% Similarity=0.172 Sum_probs=38.2
Q ss_pred eeEEecCCCCCCCCHhHHHHHHhhcCCCEEEeccC---C-hHHHHHHHhcCCeEEE
Q 015411 23 IGINYGQIANNLPTPENVIPLVKSIGATRVKLYDA---D-PKVLKAFANTGVEFTV 74 (407)
Q Consensus 23 ~GVnYg~~~~nlps~~~v~~llks~gi~~VRlY~~---d-~~vL~A~a~tgi~v~l 74 (407)
+.||+...-..+ +.++.++.++..|++.|-++.. + ..+.+.++++|++|..
T Consensus 3 ~~~~~~~~~~~~-~l~e~~~~~~e~G~~~vEl~~~~~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 3 FAANLSMLFTEL-PFLERFAAAAQAGFTGVEYLFPYDWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred eeEehhHhhcCC-CHHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCeEEE
Confidence 567777555554 5788999999999999999742 2 4566778899999753
No 104
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=23.00 E-value=7.7e+02 Score=24.63 Aligned_cols=41 Identities=12% Similarity=0.187 Sum_probs=30.6
Q ss_pred CCHhHHHHHHhhcCCCEEEeccCC-------hHHHHHHHhcCCeEEEE
Q 015411 35 PTPENVIPLVKSIGATRVKLYDAD-------PKVLKAFANTGVEFTVS 75 (407)
Q Consensus 35 ps~~~v~~llks~gi~~VRlY~~d-------~~vL~A~a~tgi~v~lG 75 (407)
.+++++++.+...|+..|.+.+-+ .++++.+++.|+.+.+-
T Consensus 59 ls~ee~~~~i~e~g~~~V~i~GGEPLL~pdl~eiv~~~~~~g~~v~l~ 106 (318)
T TIGR03470 59 LSVEECLRAVDECGAPVVSIPGGEPLLHPEIDEIVRGLVARKKFVYLC 106 (318)
T ss_pred CCHHHHHHHHHHcCCCEEEEeCccccccccHHHHHHHHHHcCCeEEEe
Confidence 567888888888899999998765 35677777778766543
No 105
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=22.80 E-value=6.7e+02 Score=25.29 Aligned_cols=55 Identities=15% Similarity=0.284 Sum_probs=31.9
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccc-cccCCCCCcccccchhhhhhhhhhhhhhcCCCeeeecCCCcc
Q 015411 125 SGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVL-GSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFA 201 (407)
Q Consensus 125 ~~~Ll~am~~v~~aL~~~gl~~~I~VsTa~~~~vl-~~s~pPS~g~F~~~l~~~l~~~ldfL~~~~sp~~vNiyPyf~ 201 (407)
...++..|+.+|++|.+ ++ .++.+.....+ ...|+ .+.|.+.+|| +.|-.|=|+.
T Consensus 134 ~~n~~~ll~elr~~l~~-~~----~ls~a~~~~~~~~~~yd----------~~~l~~~vD~-------i~vMtYD~~g 189 (345)
T cd02878 134 GKNYLEFLKLLKSKLPS-GK----SLSIAAPASYWYLKGFP----------IKDMAKYVDY-------IVYMTYDLHG 189 (345)
T ss_pred HHHHHHHHHHHHHHhCc-Cc----EEEEEcCCChhhhcCCc----------HHHHHhhCcE-------EEEEeecccC
Confidence 56789999999999965 32 23332211111 11121 2457788999 6667776653
No 106
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=22.71 E-value=5.4e+02 Score=24.42 Aligned_cols=82 Identities=10% Similarity=0.177 Sum_probs=45.7
Q ss_pred hHHHHHHHhcCCeEEEEecccccc-cC---CCHHHHHHHHHHHhhhhCCCceEEEEEecccccccCC----CCchhhHHH
Q 015411 59 PKVLKAFANTGVEFTVSLGNEYLA-KM---RDPDCAKAWIKSNVQAYLPATKITCITVGNEVLTFND----TSLSGCLLP 130 (407)
Q Consensus 59 ~~vL~A~a~tgi~v~lGv~n~~l~-~~---a~~~~A~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~----~s~~~~Ll~ 130 (407)
.+-++.++..|+||++.+...... .+ .++..++.+++ +|..++..-.+.+|-+-=|--.... ......++.
T Consensus 54 ~~~i~~l~~kG~KVl~sigg~~~~~~~~~~~~~~~~~~fa~-~l~~~v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~~ 132 (255)
T cd06542 54 ETYIRPLQAKGTKVLLSILGNHLGAGFANNLSDAAAKAYAK-AIVDTVDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFVR 132 (255)
T ss_pred HHHHHHHhhCCCEEEEEECCCCCCCCccccCCHHHHHHHHH-HHHHHHHHhCCCceEEeeeecccCCCCCCcchHHHHHH
Confidence 345566778899999888654332 22 24444444333 3333322224666666555432210 112467888
Q ss_pred HHHHHHHHHHh
Q 015411 131 AMESVHTALVN 141 (407)
Q Consensus 131 am~~v~~aL~~ 141 (407)
.|+.+|+++..
T Consensus 133 lv~~Lr~~~~~ 143 (255)
T cd06542 133 LIKELRKYMGP 143 (255)
T ss_pred HHHHHHHHhCc
Confidence 89999998754
No 107
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=22.43 E-value=2.4e+02 Score=30.16 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=36.0
Q ss_pred HhHHHHHHhhcCCCEEEe-------cc------CC-------hHHHHHHHhcCCeEEEEecccccc
Q 015411 37 PENVIPLVKSIGATRVKL-------YD------AD-------PKVLKAFANTGVEFTVSLGNEYLA 82 (407)
Q Consensus 37 ~~~v~~llks~gi~~VRl-------Y~------~d-------~~vL~A~a~tgi~v~lGv~n~~l~ 82 (407)
-+++++|||++|++.-|+ += .+ .+++.++.+.||+-+|.+.--+++
T Consensus 69 y~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP 134 (476)
T PRK09589 69 YKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMP 134 (476)
T ss_pred hHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCC
Confidence 478999999999887764 31 13 368899999999999999865544
No 108
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.30 E-value=6.8e+02 Score=23.75 Aligned_cols=89 Identities=19% Similarity=0.335 Sum_probs=54.4
Q ss_pred CCHhHHHHHHhhcCCCEEEeccCC---hHHHHHHHh--cCCeEEEEecccccccCCCHHHHHHHHHHHhhhhCCCceEEE
Q 015411 35 PTPENVIPLVKSIGATRVKLYDAD---PKVLKAFAN--TGVEFTVSLGNEYLAKMRDPDCAKAWIKSNVQAYLPATKITC 109 (407)
Q Consensus 35 ps~~~v~~llks~gi~~VRlY~~d---~~vL~A~a~--tgi~v~lGv~n~~l~~~a~~~~A~~wv~~~v~~~~p~~~I~~ 109 (407)
-+|+|+.+.++ .|.+.|++|-++ ++-++++++ .+++++.-=. + +.+++..|++. .+.+
T Consensus 117 ~T~~E~~~A~~-~Gad~vklFPa~~~G~~~ik~l~~~~p~ip~~atGG------I-~~~N~~~~l~a---------Ga~~ 179 (213)
T PRK06552 117 MTVTEIVTALE-AGSEIVKLFPGSTLGPSFIKAIKGPLPQVNVMVTGG------V-NLDNVKDWFAA---------GADA 179 (213)
T ss_pred CCHHHHHHHHH-cCCCEEEECCcccCCHHHHHHHhhhCCCCEEEEECC------C-CHHHHHHHHHC---------CCcE
Confidence 36888887765 799999999665 567777764 2465542111 1 34455555543 4668
Q ss_pred EEecccccccCCCCchhhHHHHHHHHHHHHH
Q 015411 110 ITVGNEVLTFNDTSLSGCLLPAMESVHTALV 140 (407)
Q Consensus 110 I~VGNEvl~~~~~s~~~~Ll~am~~v~~aL~ 140 (407)
|.||...+........+.+-...++++++++
T Consensus 180 vavgs~l~~~~~~~~~~~i~~~a~~~~~~~~ 210 (213)
T PRK06552 180 VGIGGELNKLASQGDFDLITEKAKKYMSSLR 210 (213)
T ss_pred EEEchHHhCccccCCHHHHHHHHHHHHHHHH
Confidence 8999877643211124566666666666654
No 109
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=21.71 E-value=9.2e+02 Score=25.06 Aligned_cols=60 Identities=17% Similarity=0.234 Sum_probs=35.0
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCcccccchhhhhhhhhhhhhhcCCCeeeecCCCcccc
Q 015411 125 SGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFAYK 203 (407)
Q Consensus 125 ~~~Ll~am~~v~~aL~~~gl~~~I~VsTa~~~~vl~~s~pPS~g~F~~~l~~~l~~~ldfL~~~~sp~~vNiyPyf~~~ 203 (407)
.++.+.+++.+|++. ..+.|++..- -.+| | |-.+.+.+.++|+.+.+ +-.+++++|--+-
T Consensus 269 ~~~~~~~i~~l~~~~------~~i~i~~~~I-----~G~P---g----ET~e~~~~t~~fl~~~~-~~~~~~~~~sp~p 328 (430)
T TIGR01125 269 GEQQLDFIERLREKC------PDAVLRTTFI-----VGFP---G----ETEEDFQELLDFVEEGQ-FDRLGAFTYSPEE 328 (430)
T ss_pred HHHHHHHHHHHHHhC------CCCeEeEEEE-----EECC---C----CCHHHHHHHHHHHHhcC-CCEEeeeeccCCC
Confidence 567778888777752 1344554331 1233 1 11245677889988765 3467888876553
No 110
>PRK09989 hypothetical protein; Provisional
Probab=21.63 E-value=6.9e+02 Score=23.63 Aligned_cols=51 Identities=10% Similarity=0.178 Sum_probs=38.3
Q ss_pred eeEEecCCCCCCCCHhHHHHHHhhcCCCEEEec---cCC-hHHHHHHHhcCCeEEE
Q 015411 23 IGINYGQIANNLPTPENVIPLVKSIGATRVKLY---DAD-PKVLKAFANTGVEFTV 74 (407)
Q Consensus 23 ~GVnYg~~~~nlps~~~v~~llks~gi~~VRlY---~~d-~~vL~A~a~tgi~v~l 74 (407)
+.+|-+..-.++ |-++.++.++..||+.|-+. +.+ .++.+.++++|+++..
T Consensus 4 ~~~~~~~~~~~~-~l~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 4 FAANLSMMFTEV-PFIERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred eeeehhhhhcCC-CHHHHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEE
Confidence 456666665555 46788999999999999984 333 4677778899999876
No 111
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=21.63 E-value=1.2e+02 Score=25.87 Aligned_cols=37 Identities=22% Similarity=0.380 Sum_probs=27.8
Q ss_pred hHHHHHHhhcCCCEEEec--cCC---hHHHHHHHhcCCeEEE
Q 015411 38 ENVIPLVKSIGATRVKLY--DAD---PKVLKAFANTGVEFTV 74 (407)
Q Consensus 38 ~~v~~llks~gi~~VRlY--~~d---~~vL~A~a~tgi~v~l 74 (407)
+.+++.++.+|++.|+++ +.. ..+|++++.+|++|.-
T Consensus 50 ~~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 50 EKIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 345567778899988888 333 5799999999998653
No 112
>PRK03941 NTPase; Reviewed
Probab=21.47 E-value=6.6e+02 Score=23.34 Aligned_cols=61 Identities=10% Similarity=0.047 Sum_probs=41.0
Q ss_pred CeEEEEecccccccCCCHHHHHHHHHHHhhhhCCCceEEEEEecccccccCCCCchhhHHHHHHHHHHHHHh
Q 015411 70 VEFTVSLGNEYLAKMRDPDCAKAWIKSNVQAYLPATKITCITVGNEVLTFNDTSLSGCLLPAMESVHTALVN 141 (407)
Q Consensus 70 i~v~lGv~n~~l~~~a~~~~A~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~s~~~~Ll~am~~v~~aL~~ 141 (407)
|+|.||--|. ... +-+++++..+.|+..|.++.|=+.|= ....+ .+++..|++..+.||+.
T Consensus 1 m~V~VGS~NP--------vKi-~Av~~af~~~~~~~~v~~v~v~SgV~-~QP~g-eET~~GA~nRA~~A~~~ 61 (174)
T PRK03941 1 MKVAVGSTNP--------VKV-EAVENVFGKIFDDVEVVGVEVDSGVP-DQPFG-EETVKGAINRAKNAYSP 61 (174)
T ss_pred CEEEEeCCCH--------HHH-HHHHHHHHHhCCCcEEEEecCCCCCC-CCCCC-HHHHHHHHHHHHHHHhc
Confidence 4677776653 221 22566666667776677777766553 23445 78999999999999985
No 113
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=21.10 E-value=6.4e+02 Score=24.16 Aligned_cols=70 Identities=20% Similarity=0.202 Sum_probs=48.4
Q ss_pred CCHhHHHHHHhhcCCCEEEeccCC--------hHHHHHHHh-cCCeEEEEecccccccCCCHHHHHHHHHHHhhhhCCCc
Q 015411 35 PTPENVIPLVKSIGATRVKLYDAD--------PKVLKAFAN-TGVEFTVSLGNEYLAKMRDPDCAKAWIKSNVQAYLPAT 105 (407)
Q Consensus 35 ps~~~v~~llks~gi~~VRlY~~d--------~~vL~A~a~-tgi~v~lGv~n~~l~~~a~~~~A~~wv~~~v~~~~p~~ 105 (407)
.+|-+.++.++..|++.+=+.|.| .++++.+++ .-++|.+|=... +.+.++.++..
T Consensus 30 ~dP~~~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~~~~~~~v~vGGGIr------s~e~~~~~l~~--------- 94 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEISKIGFDWIQVGGGIR------DIEKAKRLLSL--------- 94 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHHhhCCCCEEEeCCcC------CHHHHHHHHHC---------
Confidence 368889999988999999999877 257777665 445888876543 23444454432
Q ss_pred eEEEEEeccccccc
Q 015411 106 KITCITVGNEVLTF 119 (407)
Q Consensus 106 ~I~~I~VGNEvl~~ 119 (407)
.+..|+||.|.+.+
T Consensus 95 Ga~kvvigt~a~~~ 108 (232)
T PRK13586 95 DVNALVFSTIVFTN 108 (232)
T ss_pred CCCEEEECchhhCC
Confidence 24457899998864
No 114
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=20.82 E-value=2.9e+02 Score=25.91 Aligned_cols=68 Identities=18% Similarity=0.380 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHcCCCCccEEEeee---ccCCCCCCCCCCCCHHHHHHHHHHHHHHHhcc-CCCCCCCCCCccEEEEEeec
Q 015411 238 QIDAVYAALASLGYKKLLLHISET---GWPSKGDEDEAGATPENAKKYNGNLIKLISSK-KGTPMRPNCDLNIYVFALFN 313 (407)
Q Consensus 238 qvDav~~Al~k~g~~~~~VvVtET---GWPS~G~~~~~~As~~Na~~y~~~li~~~~~~-~GTP~rp~~~~~~y~F~~FD 313 (407)
.+|.+..++.+.| +.|+|.=- ||...++.. .+....+.++..+.+.+.+. ++. -.+..|+++|
T Consensus 63 ~ld~~v~~a~~~g---i~vild~h~~~~w~~~~~~~---~~~~~~~~~~~~~~~~la~~y~~~-------~~v~~~el~N 129 (281)
T PF00150_consen 63 RLDRIVDAAQAYG---IYVILDLHNAPGWANGGDGY---GNNDTAQAWFKSFWRALAKRYKDN-------PPVVGWELWN 129 (281)
T ss_dssp HHHHHHHHHHHTT----EEEEEEEESTTCSSSTSTT---TTHHHHHHHHHHHHHHHHHHHTTT-------TTTEEEESSS
T ss_pred HHHHHHHHHHhCC---CeEEEEeccCcccccccccc---ccchhhHHHHHhhhhhhccccCCC-------CcEEEEEecC
Confidence 3455555555554 56666543 474444432 33333444444433333221 121 2366899999
Q ss_pred CCCCC
Q 015411 314 ENLKP 318 (407)
Q Consensus 314 E~wK~ 318 (407)
|+--.
T Consensus 130 EP~~~ 134 (281)
T PF00150_consen 130 EPNGG 134 (281)
T ss_dssp SGCST
T ss_pred Ccccc
Confidence 98764
No 115
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=20.69 E-value=1.8e+02 Score=30.99 Aligned_cols=51 Identities=20% Similarity=0.311 Sum_probs=33.4
Q ss_pred ecCCCCCCCCHhHHHHHHhhcCCCEEEeccCC------hHHHHHHHhcCCeEEEEeccc
Q 015411 27 YGQIANNLPTPENVIPLVKSIGATRVKLYDAD------PKVLKAFANTGVEFTVSLGNE 79 (407)
Q Consensus 27 Yg~~~~nlps~~~v~~llks~gi~~VRlY~~d------~~vL~A~a~tgi~v~lGv~n~ 79 (407)
|.++.||+ .+++++.....|++.||+|++- ..+++.+++.|+++.+.+-..
T Consensus 90 ~~~~pddv--v~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t 146 (448)
T PRK12331 90 YRNYADDV--VESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYT 146 (448)
T ss_pred cccCchhh--HHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEee
Confidence 44444443 2445566667899999999763 346677778898876665443
No 116
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=20.58 E-value=1.9e+02 Score=28.25 Aligned_cols=46 Identities=24% Similarity=0.375 Sum_probs=31.8
Q ss_pred hHHHHHHhhcCCCEEEeccCC---hHHHHHHHhcCCeEEEEeccccccc
Q 015411 38 ENVIPLVKSIGATRVKLYDAD---PKVLKAFANTGVEFTVSLGNEYLAK 83 (407)
Q Consensus 38 ~~v~~llks~gi~~VRlY~~d---~~vL~A~a~tgi~v~lGv~n~~l~~ 83 (407)
.+.+++|.+.++..+|+=+.| ...|+.++++|..|+|......+..
T Consensus 79 ~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~stl~E 127 (241)
T PF03102_consen 79 EESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMSTLEE 127 (241)
T ss_dssp HHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT--HHH
T ss_pred HHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCCCHHH
Confidence 456778888889999998876 5799999999999999988765443
No 117
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=20.54 E-value=7.8e+02 Score=23.80 Aligned_cols=100 Identities=20% Similarity=0.171 Sum_probs=58.0
Q ss_pred HhHHHHHHhhcCCCEEEec-cCC---hHHHHHHHhcCCeEEEEecccccccCCCHHHHHHHHHHHhhhhCCC-ceEEEEE
Q 015411 37 PENVIPLVKSIGATRVKLY-DAD---PKVLKAFANTGVEFTVSLGNEYLAKMRDPDCAKAWIKSNVQAYLPA-TKITCIT 111 (407)
Q Consensus 37 ~~~v~~llks~gi~~VRlY-~~d---~~vL~A~a~tgi~v~lGv~n~~l~~~a~~~~A~~wv~~~v~~~~p~-~~I~~I~ 111 (407)
|++-++.+...|.+.|=+- .+. ..+|+.+++.|+.|-.|+-..--..+ +.+.++++. +.|.-.+
T Consensus 80 P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~-----------~~i~~~l~~vD~VLiMt 148 (228)
T PRK08091 80 QFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPI-----------SLLEPYLDQIDLIQILT 148 (228)
T ss_pred HHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCCH-----------HHHHHHHhhcCEEEEEE
Confidence 6777777766776655443 222 36777788888855556554321111 122333332 4555555
Q ss_pred ecccccccCCCCchhhHHHHHHHHHHHHHhCCCCCCeEE
Q 015411 112 VGNEVLTFNDTSLSGCLLPAMESVHTALVNLGLDKQVSV 150 (407)
Q Consensus 112 VGNEvl~~~~~s~~~~Ll~am~~v~~aL~~~gl~~~I~V 150 (407)
| |.=+++ ..+.+..+..|+++|+.+++.|++-.|.|
T Consensus 149 V--~PGfgG-Q~f~~~~l~KI~~lr~~~~~~~~~~~IeV 184 (228)
T PRK08091 149 L--DPRTGT-KAPSDLILDRVIQVENRLGNRRVEKLISI 184 (228)
T ss_pred E--CCCCCC-ccccHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 5 332222 23567889999999999998887533433
No 118
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=20.49 E-value=1.8e+02 Score=28.22 Aligned_cols=50 Identities=26% Similarity=0.411 Sum_probs=37.3
Q ss_pred ceeEEecCCCCCC----CCHhHHHHHHhhcCCCEEEeccCC--------hHHHHHHHhcCCe
Q 015411 22 SIGINYGQIANNL----PTPENVIPLVKSIGATRVKLYDAD--------PKVLKAFANTGVE 71 (407)
Q Consensus 22 ~~GVnYg~~~~nl----ps~~~v~~llks~gi~~VRlY~~d--------~~vL~A~a~tgi~ 71 (407)
.+=|+-||..+.- -+.+..+.+|+.+|.+.||.|... ..|.+|+++.|+.
T Consensus 118 ~VkISTGp~Ss~~~~~iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~ 179 (236)
T TIGR03581 118 LVNISTGPLSSQGKEAIVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFY 179 (236)
T ss_pred eEEeccCcccccCCCceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCc
Confidence 4456667765543 346778899999999999999766 3477888888875
No 119
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=20.08 E-value=67 Score=27.44 Aligned_cols=25 Identities=40% Similarity=0.720 Sum_probs=19.3
Q ss_pred CHhHHHHHHhhcC---CCEEEeccCChH
Q 015411 36 TPENVIPLVKSIG---ATRVKLYDADPK 60 (407)
Q Consensus 36 s~~~v~~llks~g---i~~VRlY~~d~~ 60 (407)
.|+++..+|+.+. =+++||||+|..
T Consensus 2 ~pe~a~plLrrL~~Pt~~RARlyd~dG~ 29 (112)
T PF13756_consen 2 NPERARPLLRRLISPTRTRARLYDPDGN 29 (112)
T ss_pred CHHHHHHHHHHhCCCCCceEEEECCCCC
Confidence 4678888888763 379999999944
No 120
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=20.00 E-value=1.8e+02 Score=32.16 Aligned_cols=50 Identities=22% Similarity=0.346 Sum_probs=34.1
Q ss_pred EEecCCCCCCCCHhHHHHHHhhcCCCEEEeccCC------hHHHHHHHhcCCeEEEEe
Q 015411 25 INYGQIANNLPTPENVIPLVKSIGATRVKLYDAD------PKVLKAFANTGVEFTVSL 76 (407)
Q Consensus 25 VnYg~~~~nlps~~~v~~llks~gi~~VRlY~~d------~~vL~A~a~tgi~v~lGv 76 (407)
|.|.++.||.- +.+++....+|++.||+|++- ...++++++.|.++...+
T Consensus 89 vg~~~ypddvv--~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i 144 (593)
T PRK14040 89 LGYRHYADDVV--ERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTL 144 (593)
T ss_pred eccccCcHHHH--HHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEE
Confidence 45555555532 456677777899999999764 246677788898865444
Done!