BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015413
(407 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9V8W3|RABEP_DROME Rab proteins geranylgeranyltransferase component A OS=Drosophila
melanogaster GN=Rep PE=2 SV=1
Length = 511
Score = 169 bits (427), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 111/326 (34%), Positives = 165/326 (50%), Gaps = 26/326 (7%)
Query: 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTP 79
P FDL+VIGTG ES I+AA S GKSVLHLD N +YG +SS S+ L L+ P
Sbjct: 6 PEQFDLVVIGTGFTESCIAAAGSRIGKSVLHLDSNEYYGDVWSSFSMDALCARLDQEVEP 65
Query: 80 SSVCPDPLY--------SDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKS 131
S + Y S+ + ++ + R F+LD+ PR+L+ A V L++KS
Sbjct: 66 HSALRNARYTWHSMEKESETDAQSWNRDSVLAKSRRFSLDLC-PRILYAAGELVQLLIKS 124
Query: 132 GASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSL 191
Y EF+++D M + ++ SVP SR+ +F K+L ++EK LM+F
Sbjct: 125 NICRYAEFRAVDHVCMRH-NGEIVSVPCSRSDVFNTKTLTIVEKRLLMKFLTACN----- 178
Query: 192 DESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGI 251
D E+ S E F E+L ++ KI S V+ AIAM E G+
Sbjct: 179 DYGEDKCNEDSLEFRGRTFLEYLQAQRVTEKISSCVMQAIAMCGPSTSFEE-------GM 231
Query: 252 NRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS 311
R + S+GR+ N ++P+YG GELPQ FCR AV G +Y L+ V + D NS
Sbjct: 232 QRTQRFLGSLGRYGNT--PFLFPMYGCGELPQCFCRLCAVYGGIYCLKRAVDDIALDSNS 289
Query: 312 GSYKGVRLASGQDILSHKLVLDPSFT 337
+ + ++G+ + + +V P +T
Sbjct: 290 NEF--LLSSAGKTLRAKNVVSAPGYT 313
>sp|Q10305|GDI1_SCHPO Probable secretory pathway GDP dissociation inhibitor 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=gdi1 PE=3 SV=1
Length = 440
Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 98/350 (28%), Positives = 166/350 (47%), Gaps = 52/350 (14%)
Query: 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
+D+IV+GTGL E V+S S GK VLH+D N +YG+ +SL++ L P
Sbjct: 5 YDVIVLGTGLTECVLSGLLSVDGKKVLHIDRNDYYGADSASLNLTQLYALFR----PGEQ 60
Query: 83 CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
P+ L D R++ +D+ P+ L ++++ + + Y+EFK I
Sbjct: 61 RPESLGRD---------------RDWCVDLV-PKFLMANGDLTNILIYTDVTRYIEFKQI 104
Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
+++ D ++ VP + K + L EK + +F + V + D S ++ I
Sbjct: 105 AGSYVY-RDGRIAKVPGNEMEALKSPLMSLFEKRRAKKFLEWVNNYREDDPSTYKDINID 163
Query: 203 EEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIG 262
+ ++S F +F L + + +A+A+ D + + +TR+ R+ LY SSI
Sbjct: 164 RDSMESVFKKF----GLQSGTQDFIGHAMALYLDDAYLKKPARETRE---RILLYASSIA 216
Query: 263 RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG 322
+F + IYP+YG GELPQ F R +A+ G Y+L PV ++ + G GVR SG
Sbjct: 217 KFGKS--PYIYPLYGLGELPQGFARLSAIYGGTYMLNQPVDEIVYG-DDGVAIGVR--SG 271
Query: 323 QDILSHKLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICI 371
+ K ++ DPS+ +E ++ G++ R ICI
Sbjct: 272 DQVAKAKQIIGDPSY------------FREKVRSV------GRLVRAICI 303
>sp|P50396|GDIA_MOUSE Rab GDP dissociation inhibitor alpha OS=Mus musculus GN=Gdi1 PE=1
SV=3
Length = 447
Score = 128 bits (322), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 102/384 (26%), Positives = 181/384 (47%), Gaps = 58/384 (15%)
Query: 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
+D+IV+GTGL E ++S S +GK VLH+D NP+YG SS+ TP
Sbjct: 5 YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 49
Query: 83 CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
+ LY +I + + R++N+D+ P+ L V ++L + + YL+FK +
Sbjct: 50 --EELYKRFQILEGPPESMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 105
Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
+ +F+ K+ VP + +G+ EK + +F V +EN+ +
Sbjct: 106 EGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTF 158
Query: 203 E--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
E + ++ + K L + +A+A+ D + + L+T INR+ LY+ S
Sbjct: 159 EGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSES 215
Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
+ R+ + +YP+YG GELPQ F R +A+ G Y+L PV ++ + +G GV+ +
Sbjct: 216 LARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-S 270
Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK-PD 379
G+ +L+ DPS+ +P + + G+V R ICI +K +
Sbjct: 271 EGEVARCKQLICDPSY-IPDRVQKA-----------------GQVIRIICILSHPIKNTN 312
Query: 380 LSNFLVIFPPRCKID---SWYFCL 400
+N I P+ +++ Y C+
Sbjct: 313 DANSCQIIIPQNQVNRKSDIYVCM 336
>sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha OS=Bos taurus GN=GDI1 PE=1
SV=1
Length = 447
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 102/384 (26%), Positives = 181/384 (47%), Gaps = 58/384 (15%)
Query: 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
+D+IV+GTGL E ++S S +GK VLH+D NP+YG SS+ TP
Sbjct: 5 YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 49
Query: 83 CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
+ LY ++ + + R++N+D+ P+ L V ++L + + YL+FK +
Sbjct: 50 --EELYKRFQLLEGPPETMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 105
Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
+ +F+ K+ VP + +G+ EK + +F V +EN+ +
Sbjct: 106 EGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTF 158
Query: 203 E--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
E + ++ + K L + +A+A+ D + + L+T INR+ LY+ S
Sbjct: 159 EGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSES 215
Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
+ R+ + +YP+YG GELPQ F R +A+ G Y+L PV ++ + +G GV+ +
Sbjct: 216 LARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-S 270
Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK-PD 379
G+ +L+ DPS+ VP + + G+V R ICI +K +
Sbjct: 271 EGEVARCKQLICDPSY-VPDRVRKA-----------------GQVIRIICILSHPIKNTN 312
Query: 380 LSNFLVIFPPRCKID---SWYFCL 400
+N I P+ +++ Y C+
Sbjct: 313 DANSCQIIIPQNQVNRKSDIYVCM 336
>sp|Q6Q7J2|GDIB_PIG Rab GDP dissociation inhibitor beta OS=Sus scrofa GN=GDI2 PE=2 SV=1
Length = 445
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/318 (27%), Positives = 151/318 (47%), Gaps = 38/318 (11%)
Query: 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS-IADLTHFLNSHSTPSS 81
+D+IV+GTGL E ++S S +GK VLH+D NP+YG +S++ + DL N P +
Sbjct: 5 YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFNIPGAPPA 64
Query: 82 VCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKS 141
R++N+D+ P+ L V ++L + + YL+FK
Sbjct: 65 SM-------------------GRGRDWNVDLI-PKFLMANGQLVKMLLFTEVTRYLDFKV 104
Query: 142 IDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRI 201
+ +F+ K+ VP + A +GL EK + +F V +EN+ R
Sbjct: 105 TEGSFVYKG-GKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANF------DENDPRT 157
Query: 202 SE--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNS 259
E + + E K L + +A+A+ D + + +T INR+ LY+
Sbjct: 158 FEGVDPKKTAMREVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCCET---INRIKLYSE 214
Query: 260 SIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL 319
S+ R+ + +YP+YG GELPQ F R +A+ G Y+L P+ ++ +G GV+
Sbjct: 215 SLARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEIIV--QNGKVIGVK- 269
Query: 320 ASGQDILSHKLVLDPSFT 337
+ G+ +L+ DPS+
Sbjct: 270 SEGEIARCKQLICDPSYV 287
>sp|O97555|GDIA_CANFA Rab GDP dissociation inhibitor alpha OS=Canis familiaris GN=GDI1
PE=2 SV=1
Length = 447
Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 101/384 (26%), Positives = 180/384 (46%), Gaps = 58/384 (15%)
Query: 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
+D+IV+GTGL E ++S S +GK VLH+D NP+YG SS+ TP
Sbjct: 5 YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 49
Query: 83 CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
+ LY ++ + + R++N+D+ P+ L V ++L + + YL+FK +
Sbjct: 50 --EELYKRFQLLEGPPEAMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 105
Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
+ +F+ K+ VP + +G+ EK + +F V +EN+ +
Sbjct: 106 EGSFIYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTF 158
Query: 203 E--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
E + + + K L + +A+A+ D + + L+T INR+ LY+ S
Sbjct: 159 EGVDPQSTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSES 215
Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
+ R+ + +YP+YG GELPQ F R +A+ G Y+L PV ++ + +G GV+ +
Sbjct: 216 LARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-S 270
Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK-PD 379
G+ +L+ DPS+ +P + + G+V R ICI +K +
Sbjct: 271 EGEVARCKQLICDPSY-IPDRVRKA-----------------GQVIRIICILSHPIKNTN 312
Query: 380 LSNFLVIFPPRCKID---SWYFCL 400
+N I P+ +++ Y C+
Sbjct: 313 DANSCQIIIPQNQVNRKSDIYVCM 336
>sp|Q8HXX7|GDIA_MACFA Rab GDP dissociation inhibitor alpha OS=Macaca fascicularis GN=GDI1
PE=2 SV=1
Length = 447
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/368 (26%), Positives = 173/368 (47%), Gaps = 52/368 (14%)
Query: 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
+D+IV+GTGL E ++S S +GK VLH+D NP+YG SS+ TP
Sbjct: 5 YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 49
Query: 83 CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
+ LY ++ + + R++N+D+ P+ L V ++L + + YL+FK +
Sbjct: 50 --EELYKRFQLLEGPPESMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 105
Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
+ +F+ K+ VP + +G+ EK + +F V + DE++
Sbjct: 106 EGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVA---NFDENDPKTFEGV 161
Query: 203 EEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIG 262
+ S + K L + +A+A+ D + + L+T INR+ LY+ S+
Sbjct: 162 DPQTTS-MRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSESLA 217
Query: 263 RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG 322
R+ + +YP+YG GELPQ F R +A+ G Y+L PV ++ + +G GV+ + G
Sbjct: 218 RYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-SEG 272
Query: 323 QDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--PDL 380
+ +L+ DPS+ +P + + G+V R ICI +K D
Sbjct: 273 EVARCKQLICDPSY-IPDRVRKA-----------------GQVIRIICILSHPIKNTNDA 314
Query: 381 SNFLVIFP 388
++ +I P
Sbjct: 315 NSCQIIIP 322
>sp|Q7YQM0|GDIA_PONPY Rab GDP dissociation inhibitor alpha OS=Pongo pygmaeus GN=GDI1 PE=2
SV=1
Length = 447
Score = 126 bits (316), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 99/368 (26%), Positives = 173/368 (47%), Gaps = 52/368 (14%)
Query: 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
+D+IV+GTGL E ++S S +GK VLH+D NP+YG SS+ TP
Sbjct: 5 YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 49
Query: 83 CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
+ LY ++ + + R++N+D+ P+ L V ++L + + YL+FK +
Sbjct: 50 --EELYKRFQLLEGPPESMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 105
Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
+ +F+ K+ VP + +G+ EK + +F V + DE++
Sbjct: 106 EGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVA---NFDENDPKTFEGV 161
Query: 203 EEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIG 262
+ S + K L + +A+A+ D + + L+T INR+ LY+ S+
Sbjct: 162 DPQTTS-MRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSESLA 217
Query: 263 RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG 322
R+ + +YP+YG GELPQ F R +A+ G Y+L PV ++ + +G GV+ + G
Sbjct: 218 RYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-SEG 272
Query: 323 QDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--PDL 380
+ +L+ DPS+ +P + + G+V R ICI +K D
Sbjct: 273 EVARCKQLICDPSY-IPDRVRKA-----------------GQVIRIICILSHPIKNTNDA 314
Query: 381 SNFLVIFP 388
++ +I P
Sbjct: 315 NSCQIIIP 322
>sp|P50398|GDIA_RAT Rab GDP dissociation inhibitor alpha OS=Rattus norvegicus GN=Gdi1
PE=1 SV=1
Length = 447
Score = 125 bits (315), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 101/382 (26%), Positives = 179/382 (46%), Gaps = 54/382 (14%)
Query: 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
+D+IV+GTGL E ++S S +GK VLH+D NP+YG SS+ TP
Sbjct: 5 YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 49
Query: 83 CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
+ LY ++ + + R++N+D+ P+ L V ++L + + YL+FK +
Sbjct: 50 --EELYKRFQLLEGPPESMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 105
Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
+ +F+ K+ VP + +G+ EK + +F V + DE++
Sbjct: 106 EGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVA---NFDENDPKTFEGV 161
Query: 203 EEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIG 262
+ S + K L + +A+A+ D + + L+T INR+ LY+ S+
Sbjct: 162 DPQTTS-MRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSESLA 217
Query: 263 RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG 322
R+ + +YP+YG GELPQ F R +A+ G Y+L PV ++ + +G GV+ + G
Sbjct: 218 RYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-SEG 272
Query: 323 QDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK-PDLS 381
+ +L+ DPS+ +P + + G+V R ICI +K + +
Sbjct: 273 EVARCKQLICDPSY-IPDRVRKA-----------------GQVIRIICILSHPIKNTNDA 314
Query: 382 NFLVIFPPRCKID---SWYFCL 400
N I P+ +++ Y C+
Sbjct: 315 NSCQIIIPQNQVNRKSDIYVCM 336
>sp|Q5RCE1|GDIB_PONAB Rab GDP dissociation inhibitor beta OS=Pongo abelii GN=GDI2 PE=2
SV=1
Length = 445
Score = 125 bits (314), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 90/318 (28%), Positives = 151/318 (47%), Gaps = 38/318 (11%)
Query: 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
+D+IV+GTGL E ++S S +GK VLH+D NP+YG S SI L + P S
Sbjct: 5 YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGE--SASITPLEDLYKRYKIPGS- 61
Query: 83 CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
P+ + R++N+D+ P+ L V ++L + + YL+FK
Sbjct: 62 PPESM---------------GRGRDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVT 105
Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
+ +F+ K+ VP + A +GL EK + +F V + DE +
Sbjct: 106 EGSFVYKG-GKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVA---NFDEKDPRTF--- 158
Query: 203 EEDLD---SPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNS 259
E +D + + K L + +A+A+ D + + +T INR+ LY+
Sbjct: 159 -EGIDPKKTTMRDVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCYET---INRIKLYSE 214
Query: 260 SIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL 319
S+ R+ + +YP+YG GELPQ F R +A+ G Y+L P+ ++ +G GV+
Sbjct: 215 SLARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEIIV--QNGKVIGVK- 269
Query: 320 ASGQDILSHKLVLDPSFT 337
+ G+ +L+ DPS+
Sbjct: 270 SEGEIARCKQLICDPSYV 287
>sp|O97556|GDIB_CANFA Rab GDP dissociation inhibitor beta OS=Canis familiaris GN=GDI2
PE=2 SV=1
Length = 445
Score = 125 bits (314), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 90/320 (28%), Positives = 154/320 (48%), Gaps = 42/320 (13%)
Query: 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS-IADL-THFLNSHSTPS 80
+D+IV+GTGL E ++S + +GK VLH+D NP+YG +S++ + DL F + P+
Sbjct: 5 YDVIVLGTGLTECILSGIMTVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPGAPPA 64
Query: 81 SVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFK 140
S+ R++NLD+ P+ L V ++L + + YL+FK
Sbjct: 65 SM--------------------GRGRDWNLDLI-PKFLMANGQLVKMLLYTEVTRYLDFK 103
Query: 141 SIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVR 200
+ +F+ K+ VP + A +GL EK + +F V + DE +
Sbjct: 104 VTEGSFVYKG-GKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVA---NFDEKDPRTF- 158
Query: 201 ISEEDLD---SPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALY 257
E +D + E K L + +A+A+ D + + +T INR+ LY
Sbjct: 159 ---EGIDPKKTAIGEVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCCET---INRIKLY 212
Query: 258 NSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGV 317
+ S+ R+ + +YP+YG GELPQ F R +A+ G Y+L P+ ++ +G GV
Sbjct: 213 SESLARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEIIV--QNGKVIGV 268
Query: 318 RLASGQDILSHKLVLDPSFT 337
+ + G+ +L+ DPS+
Sbjct: 269 K-SEGEVARCKQLICDPSYV 287
>sp|P60028|GDIA_PANTR Rab GDP dissociation inhibitor alpha OS=Pan troglodytes GN=GDI1
PE=2 SV=1
Length = 447
Score = 125 bits (314), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 98/368 (26%), Positives = 173/368 (47%), Gaps = 52/368 (14%)
Query: 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
+D+IV+GTGL E ++S S +GK VLH+D NP+YG SS+ TP
Sbjct: 5 YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 49
Query: 83 CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
+ LY ++ + + R++N+D+ P+ L V ++L + + YL+FK +
Sbjct: 50 --EELYKRFQLLEGPPESMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 105
Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
+ +F+ K+ VP + +G+ EK + +F V + DE++
Sbjct: 106 EGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVA---NFDENDPKTFEGV 161
Query: 203 EEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIG 262
+ S + K L + +A+A+ D + + L+T +NR+ LY+ S+
Sbjct: 162 DPQTTS-MRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---VNRIKLYSESLA 217
Query: 263 RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG 322
R+ + +YP+YG GELPQ F R +A+ G Y+L PV ++ + +G GV+ + G
Sbjct: 218 RYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-SEG 272
Query: 323 QDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--PDL 380
+ +L+ DPS+ +P + + G+V R ICI +K D
Sbjct: 273 EVARCKQLICDPSY-IPDRVRKA-----------------GQVIRIICILSHPIKNTNDA 314
Query: 381 SNFLVIFP 388
++ +I P
Sbjct: 315 NSCQIIIP 322
>sp|P31150|GDIA_HUMAN Rab GDP dissociation inhibitor alpha OS=Homo sapiens GN=GDI1 PE=1
SV=2
Length = 447
Score = 125 bits (314), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 98/368 (26%), Positives = 173/368 (47%), Gaps = 52/368 (14%)
Query: 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
+D+IV+GTGL E ++S S +GK VLH+D NP+YG SS+ TP
Sbjct: 5 YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 49
Query: 83 CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
+ LY ++ + + R++N+D+ P+ L V ++L + + YL+FK +
Sbjct: 50 --EELYKRFQLLEGPPESMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 105
Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
+ +F+ K+ VP + +G+ EK + +F V + DE++
Sbjct: 106 EGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVA---NFDENDPKTFEGV 161
Query: 203 EEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIG 262
+ S + K L + +A+A+ D + + L+T +NR+ LY+ S+
Sbjct: 162 DPQTTS-MRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---VNRIKLYSESLA 217
Query: 263 RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG 322
R+ + +YP+YG GELPQ F R +A+ G Y+L PV ++ + +G GV+ + G
Sbjct: 218 RYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-SEG 272
Query: 323 QDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--PDL 380
+ +L+ DPS+ +P + + G+V R ICI +K D
Sbjct: 273 EVARCKQLICDPSY-IPDRVRKA-----------------GQVIRIICILSHPIKNTNDA 314
Query: 381 SNFLVIFP 388
++ +I P
Sbjct: 315 NSCQIIIP 322
>sp|P50397|GDIB_BOVIN Rab GDP dissociation inhibitor beta OS=Bos taurus GN=GDI2 PE=2 SV=3
Length = 445
Score = 124 bits (312), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 90/319 (28%), Positives = 154/319 (48%), Gaps = 40/319 (12%)
Query: 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS-IADL-THFLNSHSTPS 80
+D+IV+GTGL E ++S S +GK VLH+D NP+YG +S++ + DL F + P+
Sbjct: 5 YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPGAPPA 64
Query: 81 SVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFK 140
S+ R++N+D+ P+ L V ++L + + YL+FK
Sbjct: 65 SM--------------------GRGRDWNVDLI-PKFLMANGQLVKMLLFTEVTRYLDFK 103
Query: 141 SIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVR 200
+ +F+ K+ VP + A +GL EK + +F V +EN+ R
Sbjct: 104 VTEGSFVYKG-GKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANF------DENDPR 156
Query: 201 ISE--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN 258
E + + E K L + +A+A+ D + + +T INR+ LY+
Sbjct: 157 TFEGIDPKKTSMREVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCCET---INRIKLYS 213
Query: 259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVR 318
S+ R+ + +YP+YG GELPQ F R +A+ G Y+L P+ ++ +G GV+
Sbjct: 214 ESLARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEII--MQNGKVIGVK 269
Query: 319 LASGQDILSHKLVLDPSFT 337
+ G+ +L+ DPS+
Sbjct: 270 -SEGEIARCKQLICDPSYV 287
>sp|Q9QZD5|RAE2_MOUSE Rab proteins geranylgeranyltransferase component A 2 OS=Mus
musculus GN=Chml PE=2 SV=2
Length = 621
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 145/293 (49%), Gaps = 37/293 (12%)
Query: 101 LSQHPRNFNLD-VSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPD 159
+ + R FN+D VS P L+ +DL++KS S Y EFK++ + K+ VP
Sbjct: 221 MVKESRRFNIDLVSKP--LYSQGSLIDLLIKSNVSRYAEFKNVTRILAF-WEGKVEQVPC 277
Query: 160 SRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKL 219
SRA +F K L ++EK LM+F + + ++ + S F+++L KL
Sbjct: 278 SRADVFNSKELSMVEKRMLMKFLTFCLDYEQHSDEYQDFKQCS-------FSDYLKTKKL 330
Query: 220 PHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQG 279
++ +L++IAM SE T DG+ + +GRF N I+P+YG G
Sbjct: 331 TPNLQHFILHSIAM------TSESSCTTLDGLQATKNFLQCLGRFGNT--PFIFPLYGHG 382
Query: 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVP 339
E+PQ FCR AV G +Y LR V L+ D++SG KG+ A GQ I ++ +++ S+ +P
Sbjct: 383 EIPQCFCRMCAVFGGVYCLRHKVQCLVVDKDSGRCKGIIDAFGQRISANYFIVEDSY-LP 441
Query: 340 GSLASSHQQLQESFQAFSLSDNKGKVARGICIT-RSSLKPDLSN--FLVIFPP 389
S+ Q Q ++R + IT +S LK D +++ PP
Sbjct: 442 KETCSNVQYKQ--------------ISRAVLITDQSILKTDSDQQISILVVPP 480
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 41/57 (71%)
Query: 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSH 76
PT FD+++IGTGLPES+++AA S SG+ VLH+D +YG +++S S L +L +
Sbjct: 6 PTEFDVVIIGTGLPESILAAACSRSGQRVLHVDSRSYYGGNWASFSFTGLQSWLKDY 62
>sp|P39958|GDI1_YEAST Rab GDP-dissociation inhibitor OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=GDI1 PE=1 SV=1
Length = 451
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/362 (23%), Positives = 168/362 (46%), Gaps = 45/362 (12%)
Query: 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPS 80
T +D+IV+GTG+ E ++S S GK VLH+D YG +S++++ L
Sbjct: 8 TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQ----- 62
Query: 81 SVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFK 140
+P+ + S + R++N+D+ P+ L ++++ + + Y++FK
Sbjct: 63 ----NPISKEERESKFGK------DRDWNVDLI-PKFLMANGELTNILIHTDVTRYVDFK 111
Query: 141 SIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVR 200
+ +++ K+ VP + +G+ EK ++ +F + + + D S +
Sbjct: 112 QVSGSYVF-KQGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLD 170
Query: 201 ISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
+ + +D + +F L + K + +A+A+ D + + R R+ LY S
Sbjct: 171 LDKNTMDEVYYKF----GLGNSTKEFIGHAMALWTNDDYLQQ---PARPSFERILLYCQS 223
Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
+ R+ + +YP+YG GELPQ F R +A+ G Y+L P+ +L +++G ++GV+
Sbjct: 224 VARYGKS--PYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTK 281
Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL 380
G + ++ DP++ P S+ Q +V R ICI + P+
Sbjct: 282 LGT-FKAPLVIADPTY-FPEKCKSTGQ----------------RVIRAICILNHPV-PNT 322
Query: 381 SN 382
SN
Sbjct: 323 SN 324
>sp|P50395|GDIB_HUMAN Rab GDP dissociation inhibitor beta OS=Homo sapiens GN=GDI2 PE=1
SV=2
Length = 445
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/318 (28%), Positives = 150/318 (47%), Gaps = 38/318 (11%)
Query: 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
+D+IV+GTGL E ++S S +GK VLH+D NP+YG S SI L P S
Sbjct: 5 YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGE--SASITPLEDLYKRFKIPGS- 61
Query: 83 CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
P+ + R++N+D+ P+ L V ++L + + YL+FK
Sbjct: 62 PPESM---------------GRGRDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVT 105
Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
+ +F+ K+ VP + A +GL EK + +F V + DE +
Sbjct: 106 EGSFVYKG-GKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVA---NFDEKDPRTF--- 158
Query: 203 EEDLD---SPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNS 259
E +D + + K L + +A+A+ D + + +T INR+ LY+
Sbjct: 159 -EGIDPKKTTMRDVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCYET---INRIKLYSE 214
Query: 260 SIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL 319
S+ R+ + +YP+YG GELPQ F R +A+ G Y+L P+ ++ +G GV+
Sbjct: 215 SLARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEIIV--QNGKVIGVK- 269
Query: 320 ASGQDILSHKLVLDPSFT 337
+ G+ +L+ DPS+
Sbjct: 270 SEGEIARCKQLICDPSYV 287
>sp|Q9QXG2|RAE1_MOUSE Rab proteins geranylgeranyltransferase component A 1 OS=Mus
musculus GN=Chm PE=2 SV=1
Length = 665
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 133/275 (48%), Gaps = 33/275 (12%)
Query: 106 RNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIF 165
R FN+D+ ++L+ +DL++KS S Y EFK+I + + VP SRA +F
Sbjct: 237 RRFNIDLVS-KLLYSRGLLIDLLIKSNVSRYAEFKNITRILAF-REGTVEQVPCSRADVF 294
Query: 166 KDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS 225
K L ++EK LM+F + E + + EE + F+E+L KL ++
Sbjct: 295 NSKQLTMVEKRMLMKFLTFCVEY----EDHPDEYKAYEE---TTFSEYLKTQKLTPNLQY 347
Query: 226 IVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF 285
VL++IAM SE T DG+ + +GR+ N ++P+YGQGELPQ F
Sbjct: 348 FVLHSIAMT------SETTSSTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCF 399
Query: 286 CRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASS 345
CR AV G +Y LR V L+ D+ S K + GQ I+S V++ S+ + +
Sbjct: 400 CRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIVDQFGQRIISKHFVIEDSYLSENTCSGV 459
Query: 346 HQQLQESFQAFSLSDNKGKVARGICITRSS-LKPD 379
+ +++R + IT S LKPD
Sbjct: 460 QYR---------------QISRAVLITDGSVLKPD 479
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTP 79
P+ FD+IVIGTGLPES+I+AA S SG+ VLH+D +YG +++S S + L +L +
Sbjct: 6 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQEN 65
Query: 80 SSVCPD-PLYSDVEISNYASRLLSQHPRNFN 109
S V + ++ + + N + LLS +
Sbjct: 66 SDVVTENSMWQEQILENEEAILLSSKDKTIQ 96
>sp|P24386|RAE1_HUMAN Rab proteins geranylgeranyltransferase component A 1 OS=Homo
sapiens GN=CHM PE=1 SV=3
Length = 653
Score = 122 bits (306), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 134/275 (48%), Gaps = 33/275 (12%)
Query: 106 RNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIF 165
R FN+D+ ++L+ +DL++KS S Y EFK+I + ++ VP SRA +F
Sbjct: 225 RRFNIDLVS-KLLYSRGLLIDLLIKSNVSRYAEFKNITRILAF-REGRVEQVPCSRADVF 282
Query: 166 KDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS 225
K L ++EK LM+F + + + I+ F E+L KL ++
Sbjct: 283 NSKQLTMVEKRMLMKFLTFCMEYEKYPDEYKGYEEIT-------FYEYLKTQKLTPNLQY 335
Query: 226 IVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF 285
IV+++IAM SE T DG+ + +GR+ N ++P+YGQGELPQ F
Sbjct: 336 IVMHSIAM------TSETASSTIDGLKATKNFLHCLGRYGNT--PFLFPLYGQGELPQCF 387
Query: 286 CRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASS 345
CR AV G +Y LR V L+ D+ S K + GQ I+S +++ S+ P ++ S
Sbjct: 388 CRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIIDQFGQRIISEHFLVEDSY-FPENMCSR 446
Query: 346 HQQLQESFQAFSLSDNKGKVARGICIT-RSSLKPD 379
Q Q ++R + IT RS LK D
Sbjct: 447 VQYRQ--------------ISRAVLITDRSVLKTD 467
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTP 79
P+ FD+IVIGTGLPES+I+AA S SG+ VLH+D +YG +++S S + L +L +
Sbjct: 6 PSEFDVIVIGTGLPESIIAAACSRSGRRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQEN 65
Query: 80 SSVCPD-PLYSDVEISNYASRLLSQHPRNFN 109
S + D P++ D + N + LS+ +
Sbjct: 66 SDIVSDSPVWQDQILENEEAIALSRKDKTIQ 96
>sp|P50399|GDIB_RAT Rab GDP dissociation inhibitor beta OS=Rattus norvegicus GN=Gdi2
PE=1 SV=2
Length = 445
Score = 121 bits (304), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 88/320 (27%), Positives = 154/320 (48%), Gaps = 42/320 (13%)
Query: 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS-IADL-THFLNSHSTPS 80
+D+IV+GTGL E ++S S +GK VLH+D NP+YG +S++ + DL F P+
Sbjct: 5 YDVIVLGTGLTECILSGIMSVNGKKVLHMDQNPYYGGESASITPLEDLYKRFKLPGQPPA 64
Query: 81 SVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFK 140
S+ R++N+D+ P+ L V ++L + + Y++FK
Sbjct: 65 SM--------------------GRGRDWNVDLI-PKFLMANGQLVKMLLFTEVTRYMDFK 103
Query: 141 SIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVR 200
I+ +F+ K+ VP + A +GL EK + +F V + DE +
Sbjct: 104 VIEGSFVYKG-GKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVA---NFDEKDPRTF- 158
Query: 201 ISEEDLD---SPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALY 257
E +D + + K L + +++A+ D + + +T INR+ LY
Sbjct: 159 ---EGVDPKKTSMRDVYKKFDLGQDVIDFTGHSLALYRTDDYLDQPCCET---INRIKLY 212
Query: 258 NSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGV 317
+ S+ R+ + +YP+YG GELPQ F R +A+ G Y+L P+ ++ +G GV
Sbjct: 213 SESLARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEIIV--QNGKVVGV 268
Query: 318 RLASGQDILSHKLVLDPSFT 337
+ + G+ +L+ DPS+
Sbjct: 269 K-SEGEIARCKQLICDPSYV 287
>sp|Q61598|GDIB_MOUSE Rab GDP dissociation inhibitor beta OS=Mus musculus GN=Gdi2 PE=1
SV=1
Length = 445
Score = 121 bits (304), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 88/320 (27%), Positives = 154/320 (48%), Gaps = 42/320 (13%)
Query: 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS-IADL-THFLNSHSTPS 80
+D+IV+GTGL E ++S S +GK VLH+D NP+YG +S++ + DL F P+
Sbjct: 5 YDVIVLGTGLTECILSGIMSVNGKKVLHMDQNPYYGGESASITPLEDLYKRFKLPGQPPA 64
Query: 81 SVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFK 140
S+ R++N+D+ P+ L V ++L + + Y++FK
Sbjct: 65 SM--------------------GRGRDWNVDLI-PKFLMANGQLVKMLLFTEVTRYMDFK 103
Query: 141 SIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVR 200
I+ +F+ K+ VP + A +GL EK + +F V + DE +
Sbjct: 104 VIEGSFVYKG-GKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVA---NFDEKDPRTF- 158
Query: 201 ISEEDLD---SPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALY 257
E +D + + K L + +++A+ D + + +T INR+ LY
Sbjct: 159 ---EGVDPKKTSMRDVYKKFDLGQDVIDFTGHSLALYRTDDYLDQPCCET---INRIKLY 212
Query: 258 NSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGV 317
+ S+ R+ + +YP+YG GELPQ F R +A+ G Y+L P+ ++ +G GV
Sbjct: 213 SESLARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEIIV--QNGKVVGV 268
Query: 318 RLASGQDILSHKLVLDPSFT 337
+ + G+ +L+ DPS+
Sbjct: 269 K-SEGEIARCKQLICDPSYV 287
>sp|P32864|RAEP_YEAST Rab proteins geranylgeranyltransferase component A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MRS6 PE=1
SV=2
Length = 603
Score = 121 bits (304), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 108/387 (27%), Positives = 175/387 (45%), Gaps = 54/387 (13%)
Query: 14 PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFL 73
P P P D+++ GTG+ ESV++AA + G +VLH+D N +YG ++L++ + ++
Sbjct: 38 PLPATTPDKVDVLIAGTGMVESVLAAALAWQGSNVLHIDKNDYYGDTSATLTVDQIKRWV 97
Query: 74 NSHSTPSSVCPDPLYSDVEISNYASRLLSQ---HPRNFNLDVSGPRVLFCADHAVDLMLK 130
N + S C Y + ++ Y S L+ R+F +D+S P++LF + +++K
Sbjct: 98 NEVNEGSVSC----YKNAKL--YVSTLIGSGKYSSRDFGIDLS-PKILFAKSDLLSILIK 150
Query: 131 SGASHYLEFKSIDA--TFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGH 188
S YLEF+S+ T+ D KL +++ IF D++L LM K LM+F K V
Sbjct: 151 SRVHQYLEFQSLSNFHTYENDCFEKLT---NTKQEIFTDQNLPLMTKRNLMKFIKFVLNW 207
Query: 189 LSLDESEENNVRISEEDLDSPFAEFL-TKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKT 247
E I + + ++FL K KL ++++I + YD V K
Sbjct: 208 -------EAQTEIWQPYAERTMSDFLGEKFKLEKPQVFELIFSIGLC-YDLNV-----KV 254
Query: 248 RDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLT 307
+ + R+ Y +S + AL G GEL Q FCR AAV G Y L ++S
Sbjct: 255 PEALQRIRRYLTSFDVY-GPFPALCSKYGGPGELSQGFCRSAAVGGATYKLNEKLVSF-- 311
Query: 308 DQNSGSYKGVRLASGQDI-LSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVA 366
+ + K G + +S K+++ P+ S QQ Q V
Sbjct: 312 ---NPTTKVATFQDGSKVEVSEKVIISPTQAPKDSKHVPQQQYQ--------------VH 354
Query: 367 RGICITRS----SLKPDLSNFLVIFPP 389
R CI + S +V+FPP
Sbjct: 355 RLTCIVENPCTEWFNEGESAAMVVFPP 381
>sp|P26374|RAE2_HUMAN Rab proteins geranylgeranyltransferase component A 2 OS=Homo
sapiens GN=CHML PE=1 SV=2
Length = 656
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 140/287 (48%), Gaps = 35/287 (12%)
Query: 106 RNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIF 165
R FN+D+ ++L+ +DL++KS S Y+EFK++ + K+ VP SRA +F
Sbjct: 227 RRFNIDLVS-KLLYSQGLLIDLLIKSDVSRYVEFKNVTRILAF-REGKVEQVPCSRADVF 284
Query: 166 KDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS 225
K L ++EK LM+F + + + + S F+E+L KL ++
Sbjct: 285 NSKELTMVEKRMLMKFLTFCLEYEQHPDEYQAFRQCS-------FSEYLKTKKLTPNLQH 337
Query: 226 IVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF 285
VL++IAM SE T DG+N + +GRF N ++P+YGQGE+PQ F
Sbjct: 338 FVLHSIAMT------SESSCTTIDGLNATKNFLQCLGRFGNT--PFLFPLYGQGEIPQGF 389
Query: 286 CRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASS 345
CR AV G +Y LR V + D+ SG K + GQ I + +++ S+ + ++
Sbjct: 390 CRMCAVFGGIYCLRHKVQCFVVDKESGRCKAIIDHFGQRINAKYFIVEDSYLSEETCSNV 449
Query: 346 HQQLQESFQAFSLSDNKGKVARGICIT-RSSLKPDL--SNFLVIFPP 389
+ +++R + IT +S LK DL ++I PP
Sbjct: 450 QYK---------------QISRAVLITDQSILKTDLDQQTSILIVPP 481
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 44/63 (69%)
Query: 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTP 79
PT FD+++IGTGLPES+++AA S SG+ VLH+D +YG +++S S + L +L +
Sbjct: 6 PTEFDVVIIGTGLPESILAAACSRSGQRVLHIDSRSYYGGNWASFSFSGLLSWLKEYQQN 65
Query: 80 SSV 82
+ +
Sbjct: 66 NDI 68
>sp|P37727|RAE1_RAT Rab proteins geranylgeranyltransferase component A 1 OS=Rattus
norvegicus GN=Chm PE=1 SV=1
Length = 650
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 117/231 (50%), Gaps = 17/231 (7%)
Query: 106 RNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIF 165
R FN+D+ ++L+ +DL++KS S Y EFK+I + + VP SRA +F
Sbjct: 222 RRFNIDLVS-QLLYSRGLLIDLLIKSNVSRYAEFKNITRILAF-REGTVEQVPCSRADVF 279
Query: 166 KDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS 225
K L ++EK LM+F + E + R E + F+E+L KL ++
Sbjct: 280 NSKQLTMVEKRMLMKFLTFCVEY----EEHPDEYRAYE---GTTFSEYLKTQKLTPNLQY 332
Query: 226 IVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF 285
VL++IAM SE T DG+ + +GR+ N ++P+YGQGELPQ F
Sbjct: 333 FVLHSIAM------TSETTSCTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCF 384
Query: 286 CRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF 336
CR AV G +Y LR V L+ D+ S K V GQ I+S +++ S+
Sbjct: 385 CRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSY 435
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTP 79
P+ FD+IVIGTGLPES+I+AA S SG+ VLH+D +YG +++S S + L +L +
Sbjct: 6 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQEN 65
Query: 80 SSV 82
+ V
Sbjct: 66 NDV 68
>sp|O93831|RAEP_CANAX Rab proteins geranylgeranyltransferase component A OS=Candida
albicans GN=MRS6 PE=3 SV=1
Length = 640
Score = 114 bits (286), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 106/381 (27%), Positives = 182/381 (47%), Gaps = 54/381 (14%)
Query: 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHF---LNSHSTPS 80
D+++IGTGL ES+++AA S G VLH+D N +YG S+L+I L + +NS
Sbjct: 5 DVLIIGTGLQESILAAALSWQGTQVLHIDSNTYYGDSCSTLTIEQLKKWCGDVNSGKIHQ 64
Query: 81 SVCPDPLYSDVEISNYASRLLSQHP-RNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEF 139
+ D +I + +Q+ +++ +D++ P+++FC + L++KS YLEF
Sbjct: 65 -------FQDAQIYIPGGKQSNQYTSKDYGIDLT-PKIMFCQSDLLSLLIKSRVYRYLEF 116
Query: 140 KSIDATFMLDADAKLCSV-PDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENN 198
+S+ + + D V ++ IF DKSL LM K R+ L LD +
Sbjct: 117 QSLSNFHVFENDDFQQKVNATTKQDIFTDKSLSLMTK----RYLMKFLKFLLLDPDYKQR 172
Query: 199 VRISEEDLDSPFAEFLTK-MKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALY 257
V+ D+P FL + KL + ++Y+I ++ Y ++ S T+ + R+ +
Sbjct: 173 VKPY---ADTPIQVFLQQEFKLEEPQINELVYSIGLS-YKEQTS-----TKQALIRMKRF 223
Query: 258 NSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPV-----ISLLTDQNSG 312
SS + ++ G GEL Q FCR AAV G Y L + IS + N G
Sbjct: 224 LSSFDVY-GKFPCMVSKFGGPGELSQGFCRSAAVAGTTYKLNTNLTDFDPISKIAHFNDG 282
Query: 313 SYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICIT 372
S+ + + K+++ P+ +P L SS+ ++ E+ Q + V R + +
Sbjct: 283 SHIKI---------NEKIIISPT-QLPKFLQSSYNKVVENLQPYY-------VTRLVTVV 325
Query: 373 RSSLKPDL----SNFLVIFPP 389
R K + S+ +V+FPP
Sbjct: 326 RRDCKEWMSGNESSAIVVFPP 346
>sp|O60112|YG63_SCHPO Uncharacterized Rab geranylgeranyltransferase C15C4.03
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC15C4.03 PE=3 SV=1
Length = 459
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 99/370 (26%), Positives = 174/370 (47%), Gaps = 41/370 (11%)
Query: 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLN--SH 76
+P ++D+I++GT L S++SAA S + + VLH+D N FYG SL++ DL
Sbjct: 3 DPNSYDVIIVGTNLRNSILSAALSWANQRVLHIDENSFYGEIDGSLTLRDLEQINEKIKK 62
Query: 77 STPSSVCPDPLYSDVEISNYASRLLSQH--PRNFNLDVS-GPRVLFCADHAVDLMLKSGA 133
S + D + + + L++ P+N + P+ +F + V L+ ++
Sbjct: 63 VDSSQILNDNGSHKSPLKRFEVQFLNKDLIPKNKGSVIQFHPQEIFASSELVKLLSETKI 122
Query: 134 SHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDE 193
YL K + +L ++ + VP+SRA IF +K+L L K +MRF K V +
Sbjct: 123 YKYLLLKPARSFRLLTSNEEWIKVPESRADIFNNKNLSLASKRIVMRFMKFVS-----NI 177
Query: 194 SEENNVRISEEDLDSPFAEFLTKM-KLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN 252
++E N + +E PF +FL ++ +L I+ ++Y + Q +S+ + T+D ++
Sbjct: 178 ADEQNQNLVKEWESKPFYKFLEEVFQLSGAIEESIIYGLC-----QSLSKDI-PTKDALD 231
Query: 253 RLALYNSSIGRFQNALGALIYPIYGQG-ELPQAFCRRAAVKGCLYVLRMPVISL------ 305
+ Y S G + + + + +YG G EL Q FCR +AV G ++L + +
Sbjct: 232 TVLKYFHSFGMYGDY--SYLLAMYGTGSELCQGFCRSSAVMGGTFMLGQAIDKIDESKIV 289
Query: 306 LTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQES------------F 353
L D ++ S K + + + L H+ + V G Q QE F
Sbjct: 290 LKDGSTLSAKKIVSSVDEGKLPHQQIQQRYLLVKG---DCQQLFQEDGFFAALDASLIHF 346
Query: 354 QAFSLSDNKG 363
FS+S+N G
Sbjct: 347 SPFSISENFG 356
>sp|P71079|FABL_BACSU Enoyl-[acyl-carrier-protein] reductase [NADPH] FabL OS=Bacillus
subtilis (strain 168) GN=fabL PE=1 SV=1
Length = 250
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 90 DVEISNYASRLL------SQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSID 143
DV ++N AS +L + ++ ++++ +LFCA A LM K+G H + S+
Sbjct: 84 DVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLG 143
Query: 144 ATFMLDADAKLCSVPDSRAAI 164
+ L+ +V S+AA+
Sbjct: 144 SIRYLE---NYTTVGVSKAAL 161
>sp|Q43415|LCYB_CAPAN Lycopene beta cyclase, chloroplastic/chromoplastic OS=Capsicum
annuum GN=LCY1 PE=2 SV=1
Length = 498
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 9 ELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP------FYGSHFS 62
+ +P Y P + DL V+G G ++ S +G SV +DPNP YG
Sbjct: 68 DFELPMYDPSKGVVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPNPKLIWPNNYGVWVD 127
Query: 63 SLSIADLTHFLNSHSTPSSVCPD 85
DL L++ + ++V D
Sbjct: 128 EFEAMDLLDCLDATWSGAAVYID 150
>sp|Q43503|LCYB_SOLLC Lycopene beta cyclase, chloroplastic OS=Solanum lycopersicum
GN=LCY1 PE=1 SV=1
Length = 500
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 9 ELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP------FYGSHFS 62
+ +P Y P + DL V+G G ++ S +G SV +DPNP YG
Sbjct: 70 DFELPMYDPSKGVVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPNPKLIWPNNYGVWVD 129
Query: 63 SLSIADLTHFLNSHSTPSSVCPD 85
DL L++ + ++V D
Sbjct: 130 EFEAMDLLDCLDATWSGAAVYID 152
>sp|C0M7N7|PPAC_STRE4 Probable manganese-dependent inorganic pyrophosphatase
OS=Streptococcus equi subsp. equi (strain 4047) GN=ppaC
PE=3 SV=1
Length = 311
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 8/123 (6%)
Query: 17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSH 76
P E TAF L G P V SA A + +L D N F S S + ++ ++ H
Sbjct: 43 PNEETAFALDYFGVSAPRVVTSAKAEGASHVIL-TDHNEFPQS-ISDIREVEVYGIVDHH 100
Query: 77 STPSSVCPDPLYSDVEISNYAS----RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSG 132
+ +PLY VE AS RL ++ + D++G +L + L+LKS
Sbjct: 101 RVANFETANPLYMRVEPVGSASSIVYRLFKENRVDVPKDIAG--MLLSGLISDTLLLKSP 158
Query: 133 ASH 135
+H
Sbjct: 159 TTH 161
>sp|B4U4N8|PPAC_STREM Probable manganese-dependent inorganic pyrophosphatase
OS=Streptococcus equi subsp. zooepidemicus (strain
MGCS10565) GN=ppaC PE=3 SV=1
Length = 311
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 8/123 (6%)
Query: 17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSH 76
P E TAF L G P V SA A + +L D N F S S + ++ ++ H
Sbjct: 43 PNEETAFALDYFGVSAPRVVTSAKAEGASHVIL-TDHNEFPQS-ISDIREVEVYGIVDHH 100
Query: 77 STPSSVCPDPLYSDVEISNYAS----RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSG 132
+ +PLY VE AS RL ++ + D++G +L + L+LKS
Sbjct: 101 RVANFETANPLYMRVEPVGSASSIVYRLFKENRVDVPKDIAG--LLLSGLISDTLLLKSP 158
Query: 133 ASH 135
+H
Sbjct: 159 TTH 161
>sp|C0MGI9|PPAC_STRS7 Probable manganese-dependent inorganic pyrophosphatase
OS=Streptococcus equi subsp. zooepidemicus (strain H70)
GN=ppaC PE=3 SV=1
Length = 311
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 8/123 (6%)
Query: 17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSH 76
P E TAF L G P V SA A + +L D N F S S + ++ ++ H
Sbjct: 43 PNEETAFALDYFGVSAPRVVTSAKAEGASHVIL-TDHNEFPQS-ISDIREVEVYGIVDHH 100
Query: 77 STPSSVCPDPLYSDVEISNYAS----RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSG 132
+ +PLY VE AS RL ++ + D++G +L + L+LKS
Sbjct: 101 RVANFETANPLYMRVEPVGSASSIVYRLFKENRVDVPKDIAG--LLLSGLISDTLLLKSP 158
Query: 133 ASH 135
+H
Sbjct: 159 TTH 161
>sp|B9DTT7|PPAC_STRU0 Probable manganese-dependent inorganic pyrophosphatase
OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J)
GN=ppaC PE=3 SV=1
Length = 311
Score = 33.1 bits (74), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 14/131 (10%)
Query: 17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS-IADLTHF--L 73
P E TAF L G P V SA A +V+ D N F SLS I+D+T F +
Sbjct: 43 PNEETAFALDYFGVTAPRVVESAKAEGV-DTVILTDHNEFQ----QSLSDISDVTIFGVV 97
Query: 74 NSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPR----VLFCADHAVDLML 129
+ H + +PL+ VE AS ++ + + NL+V P+ +L + L+L
Sbjct: 98 DHHRVANFETANPLFMRVEPVGSASSIVYRMYKENNLEV--PKEIAGLLLSGLISDTLLL 155
Query: 130 KSGASHYLEFK 140
KS +H + K
Sbjct: 156 KSPTTHMTDHK 166
>sp|P75499|GLF_MYCPN UDP-galactopyranose mutase OS=Mycoplasma pneumoniae (strain ATCC
29342 / M129) GN=glf PE=3 SV=1
Length = 399
Score = 32.7 bits (73), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDP-NPFYGSHFSSL--SIADLTHFLN 74
+ FD IV+G G+ V+S + GKSVL L+ N G+ + L + L H
Sbjct: 10 VNWNKFDFIVLGAGISGIVLSHVLAQHGKSVLLLEKRNQLGGNCYDKLDETTGLLFHQYG 69
Query: 75 SH--STPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDV 112
H T + D + E++NY R+ Q N +L +
Sbjct: 70 PHIFHTDNQKVMDFIQPFFELNNYQHRVGLQLDNNLDLTL 109
>sp|Q8S4R4|CRTSO_SOLLC Prolycopene isomerase, chloroplastic OS=Solanum lycopersicum
GN=CRTISO PE=1 SV=1
Length = 615
Score = 32.7 bits (73), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 256 LYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYK 315
+ N+S+ G + YP+ G GE+ ++ + G + R V S++ D +G
Sbjct: 303 MINASMVLCDRHFGGINYPVGGVGEIAKSLAKGLDDHGSQILYRANVTSIILD--NGKAV 360
Query: 316 GVRLASGQDILSHKLVLDPS-FTVPGSL--ASSHQQLQESFQ 354
GV+L+ G+ + +V + + + G L A + + +E+FQ
Sbjct: 361 GVKLSDGRKFYAKTIVSNATRWDTFGKLLKAENLPKEEENFQ 402
>sp|Q43578|LCYB_TOBAC Lycopene beta cyclase, chloroplastic OS=Nicotiana tabacum GN=LCY1
PE=1 SV=1
Length = 500
Score = 32.0 bits (71), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 9 ELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP------FYGSHFS 62
+ +P Y P + DL V+G G ++ S +G SV+ +DP+P YG
Sbjct: 70 DFELPMYDPSKGLVVDLAVVGGGPAGLAVAQQVSEAGLSVVSIDPSPKLIWPNNYGVWVD 129
Query: 63 SLSIADLTHFLNSHSTPSSVCPD 85
DL L++ + + V D
Sbjct: 130 EFEAMDLLDCLDATWSGTVVYID 152
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,439,547
Number of Sequences: 539616
Number of extensions: 6167133
Number of successful extensions: 16765
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 16649
Number of HSP's gapped (non-prelim): 58
length of query: 407
length of database: 191,569,459
effective HSP length: 120
effective length of query: 287
effective length of database: 126,815,539
effective search space: 36396059693
effective search space used: 36396059693
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)