Query 015413
Match_columns 407
No_of_seqs 309 out of 1951
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 06:04:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015413.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015413hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00996 GDI: GDP dissociation 100.0 3.1E-55 6.7E-60 425.8 31.9 337 19-404 1-342 (438)
2 PTZ00363 rab-GDP dissociation 100.0 7.3E-52 1.6E-56 407.7 36.1 338 19-404 1-343 (443)
3 KOG1439 RAB proteins geranylge 100.0 2.6E-47 5.6E-52 352.8 21.7 336 20-405 2-343 (440)
4 KOG4405 GDP dissociation inhib 100.0 1.8E-47 3.8E-52 352.7 20.0 355 19-403 5-406 (547)
5 COG5044 MRS6 RAB proteins gera 100.0 4.5E-43 9.7E-48 321.0 21.4 330 21-404 5-341 (434)
6 TIGR00562 proto_IX_ox protopor 100.0 3.9E-27 8.5E-32 237.2 26.9 288 22-377 2-315 (462)
7 TIGR02734 crtI_fam phytoene de 100.0 2.6E-27 5.6E-32 240.8 25.0 290 25-373 1-312 (502)
8 PRK12416 protoporphyrinogen ox 100.0 1.2E-26 2.7E-31 233.6 26.1 285 23-377 2-314 (463)
9 COG1233 Phytoene dehydrogenase 100.0 5.4E-27 1.2E-31 236.2 22.9 257 20-333 1-276 (487)
10 PLN02576 protoporphyrinogen ox 100.0 2.6E-26 5.6E-31 233.2 27.4 293 20-378 10-334 (496)
11 TIGR02733 desat_CrtD C-3',4' d 99.9 1.2E-25 2.5E-30 228.1 27.5 297 23-375 2-331 (492)
12 PRK07233 hypothetical protein; 99.9 6.1E-26 1.3E-30 226.6 24.2 287 24-376 1-289 (434)
13 PLN02268 probable polyamine ox 99.9 3.8E-26 8.2E-31 228.3 22.4 276 24-380 2-295 (435)
14 TIGR02731 phytoene_desat phyto 99.9 8.8E-25 1.9E-29 219.5 29.7 293 24-378 1-315 (453)
15 PRK07208 hypothetical protein; 99.9 5.3E-25 1.1E-29 222.7 28.1 292 19-377 1-317 (479)
16 PLN02529 lysine-specific histo 99.9 8.5E-25 1.8E-29 226.0 27.7 282 21-379 159-449 (738)
17 PRK11883 protoporphyrinogen ox 99.9 7.4E-25 1.6E-29 219.9 25.7 283 24-376 2-308 (451)
18 PLN02612 phytoene desaturase 99.9 2.5E-24 5.4E-29 220.4 29.8 299 22-378 93-405 (567)
19 PLN02676 polyamine oxidase 99.9 6.7E-25 1.5E-29 220.7 24.6 285 21-379 25-328 (487)
20 COG1231 Monoamine oxidase [Ami 99.9 1.2E-25 2.6E-30 214.2 17.8 312 20-401 5-335 (450)
21 TIGR02730 carot_isom carotene 99.9 5.6E-25 1.2E-29 222.9 23.3 297 23-377 1-326 (493)
22 PLN02328 lysine-specific histo 99.9 3.5E-23 7.6E-28 214.9 27.6 284 21-379 237-529 (808)
23 PLN02568 polyamine oxidase 99.9 2.1E-23 4.5E-28 211.5 24.2 300 19-378 2-341 (539)
24 TIGR02732 zeta_caro_desat caro 99.9 5.8E-23 1.2E-27 206.5 26.3 298 24-377 1-322 (474)
25 PLN02487 zeta-carotene desatur 99.9 1.2E-22 2.6E-27 206.1 28.0 301 21-377 74-398 (569)
26 COG1232 HemY Protoporphyrinoge 99.9 3.4E-23 7.4E-28 202.0 23.0 283 24-375 2-300 (444)
27 PLN03000 amine oxidase 99.9 1.5E-22 3.2E-27 210.1 27.6 283 21-380 183-474 (881)
28 TIGR03467 HpnE squalene-associ 99.9 1.3E-22 2.8E-27 201.6 24.0 278 36-378 1-289 (419)
29 KOG0029 Amine oxidase [Seconda 99.9 7.9E-22 1.7E-26 196.8 18.5 114 271-391 211-325 (501)
30 PLN02976 amine oxidase 99.9 3.9E-21 8.5E-26 204.6 22.4 106 269-379 926-1039(1713)
31 KOG4254 Phytoene desaturase [C 99.8 3.3E-21 7.2E-26 181.6 10.2 81 269-353 254-336 (561)
32 KOG0685 Flavin-containing amin 99.8 9.4E-18 2E-22 160.3 18.7 110 271-382 215-332 (498)
33 PRK13977 myosin-cross-reactive 99.8 8.8E-17 1.9E-21 160.8 24.2 242 18-332 18-287 (576)
34 PF01593 Amino_oxidase: Flavin 99.8 1E-18 2.2E-23 173.5 10.3 98 278-380 208-306 (450)
35 COG2907 Predicted NAD/FAD-bind 99.7 1.8E-16 3.8E-21 145.5 20.3 289 22-377 8-308 (447)
36 KOG1276 Protoporphyrinogen oxi 99.7 1.7E-15 3.6E-20 142.9 20.8 295 22-375 11-343 (491)
37 COG3349 Uncharacterized conser 99.6 1E-13 2.2E-18 135.3 16.6 293 24-375 2-314 (485)
38 TIGR00031 UDP-GALP_mutase UDP- 99.5 2.7E-12 5.9E-17 124.4 18.5 43 22-64 1-43 (377)
39 PF13450 NAD_binding_8: NAD(P) 99.4 5.5E-13 1.2E-17 96.9 6.7 42 27-68 1-42 (68)
40 COG2081 Predicted flavoprotein 99.4 1.5E-11 3.3E-16 116.4 15.1 59 271-332 102-161 (408)
41 PF01266 DAO: FAD dependent ox 99.3 3.9E-11 8.4E-16 116.2 14.7 60 271-333 136-198 (358)
42 COG0562 Glf UDP-galactopyranos 99.2 8.4E-11 1.8E-15 107.6 11.2 100 22-163 1-101 (374)
43 COG0579 Predicted dehydrogenas 99.2 6E-10 1.3E-14 108.7 16.2 60 271-332 142-205 (429)
44 PF03486 HI0933_like: HI0933-l 99.2 1E-10 2.2E-15 114.9 10.4 60 271-332 100-160 (409)
45 PRK11728 hydroxyglutarate oxid 99.1 1.2E-09 2.6E-14 107.9 15.8 58 271-332 138-198 (393)
46 TIGR03329 Phn_aa_oxid putative 99.1 6E-09 1.3E-13 105.0 20.1 57 271-332 172-231 (460)
47 TIGR01377 soxA_mon sarcosine o 99.0 3.7E-09 8.1E-14 103.7 14.7 58 271-332 134-194 (380)
48 PRK08274 tricarballylate dehyd 99.0 8.8E-09 1.9E-13 104.0 16.6 57 274-332 126-186 (466)
49 PRK12845 3-ketosteroid-delta-1 99.0 3E-08 6.5E-13 101.9 19.5 44 18-62 12-55 (564)
50 PRK11259 solA N-methyltryptoph 99.0 7.2E-09 1.6E-13 101.6 13.9 60 271-334 138-201 (376)
51 PRK11101 glpA sn-glycerol-3-ph 99.0 1.1E-08 2.4E-13 105.0 15.8 61 270-332 138-205 (546)
52 TIGR01373 soxB sarcosine oxida 99.0 1.8E-08 3.8E-13 100.0 16.3 51 280-332 184-234 (407)
53 PRK06481 fumarate reductase fl 99.0 6.6E-08 1.4E-12 98.5 20.5 41 21-61 60-100 (506)
54 PF01946 Thi4: Thi4 family; PD 98.9 7.3E-10 1.6E-14 97.0 4.2 42 22-63 17-58 (230)
55 COG1635 THI4 Ribulose 1,5-bisp 98.9 1.4E-09 3E-14 94.7 4.5 41 22-62 30-70 (262)
56 PRK01747 mnmC bifunctional tRN 98.9 6.3E-08 1.4E-12 102.0 17.0 58 271-332 397-457 (662)
57 PRK00711 D-amino acid dehydrog 98.9 1.3E-07 2.7E-12 94.1 18.0 59 271-332 190-251 (416)
58 KOG2820 FAD-dependent oxidored 98.8 1E-07 2.2E-12 88.2 15.2 51 282-332 156-206 (399)
59 COG3380 Predicted NAD/FAD-depe 98.8 6.1E-09 1.3E-13 93.4 7.0 46 23-68 2-47 (331)
60 PTZ00383 malate:quinone oxidor 98.8 7.1E-08 1.5E-12 97.3 14.8 59 271-332 199-267 (497)
61 COG0578 GlpA Glycerol-3-phosph 98.8 1.8E-07 3.9E-12 93.4 16.6 47 17-63 7-53 (532)
62 PRK05257 malate:quinone oxidor 98.8 2.8E-07 6.1E-12 93.2 17.9 43 20-62 3-47 (494)
63 COG0644 FixC Dehydrogenases (f 98.8 7.3E-09 1.6E-13 102.3 5.5 43 21-63 2-44 (396)
64 TIGR00292 thiazole biosynthesi 98.7 1.3E-08 2.7E-13 94.0 5.2 42 21-62 20-61 (254)
65 PF06100 Strep_67kDa_ant: Stre 98.7 7.7E-07 1.7E-11 87.4 17.5 43 23-65 3-49 (500)
66 PRK04176 ribulose-1,5-biphosph 98.7 1.7E-08 3.7E-13 93.4 5.3 41 21-61 24-64 (257)
67 PRK10157 putative oxidoreducta 98.7 2.6E-08 5.6E-13 99.4 5.8 40 21-60 4-43 (428)
68 PRK05249 soluble pyridine nucl 98.6 3.3E-08 7.1E-13 99.8 5.5 45 19-63 2-46 (461)
69 PRK10015 oxidoreductase; Provi 98.6 3.6E-08 7.9E-13 98.3 5.5 40 21-60 4-43 (429)
70 PRK07121 hypothetical protein; 98.6 6.6E-08 1.4E-12 98.3 6.4 42 21-62 19-60 (492)
71 PRK06115 dihydrolipoamide dehy 98.6 4.6E-08 1E-12 98.7 4.9 43 20-62 1-43 (466)
72 PRK07364 2-octaprenyl-6-methox 98.6 8.3E-08 1.8E-12 95.4 5.8 45 13-57 9-53 (415)
73 PF01494 FAD_binding_3: FAD bi 98.5 7.2E-08 1.6E-12 93.2 4.8 36 22-57 1-36 (356)
74 COG2072 TrkA Predicted flavopr 98.5 8.5E-08 1.8E-12 95.8 5.4 50 19-68 5-55 (443)
75 PLN02172 flavin-containing mon 98.5 8.8E-08 1.9E-12 96.1 5.3 44 20-63 8-51 (461)
76 PRK08010 pyridine nucleotide-d 98.5 8.6E-08 1.9E-12 96.1 5.0 44 20-63 1-45 (441)
77 PRK12266 glpD glycerol-3-phosp 98.5 1.2E-07 2.5E-12 96.7 5.7 42 20-61 4-45 (508)
78 PRK07251 pyridine nucleotide-d 98.5 9.7E-08 2.1E-12 95.7 5.0 43 20-62 1-44 (438)
79 PF12831 FAD_oxidored: FAD dep 98.5 9.8E-08 2.1E-12 95.2 4.9 40 24-63 1-40 (428)
80 PLN00093 geranylgeranyl diphos 98.5 1.4E-07 3E-12 94.5 5.7 42 15-56 32-73 (450)
81 PTZ00058 glutathione reductase 98.5 1.6E-07 3.5E-12 96.2 6.1 55 8-63 33-88 (561)
82 PRK06292 dihydrolipoamide dehy 98.5 1.2E-07 2.7E-12 95.6 5.2 42 20-62 1-42 (460)
83 PRK06370 mercuric reductase; V 98.5 1.4E-07 3.1E-12 95.2 5.5 43 19-62 2-44 (463)
84 PRK07494 2-octaprenyl-6-methox 98.5 1.4E-07 3.1E-12 92.9 5.3 40 18-57 3-42 (388)
85 TIGR02032 GG-red-SF geranylger 98.5 1.6E-07 3.5E-12 88.5 5.2 37 23-59 1-37 (295)
86 PLN02463 lycopene beta cyclase 98.5 2.2E-07 4.8E-12 92.7 6.2 48 9-56 15-62 (447)
87 PRK06467 dihydrolipoamide dehy 98.5 1.7E-07 3.6E-12 94.8 5.3 43 20-62 2-44 (471)
88 PRK12409 D-amino acid dehydrog 98.5 1.7E-07 3.7E-12 93.1 5.3 39 23-61 2-40 (410)
89 PRK06116 glutathione reductase 98.5 1.5E-07 3.2E-12 94.7 4.9 41 21-62 3-43 (450)
90 PRK13369 glycerol-3-phosphate 98.5 2E-07 4.3E-12 95.0 5.7 44 19-62 3-46 (502)
91 TIGR02485 CobZ_N-term precorri 98.4 6.8E-06 1.5E-10 82.2 16.5 61 272-332 116-177 (432)
92 TIGR01350 lipoamide_DH dihydro 98.4 1.8E-07 3.9E-12 94.4 5.1 41 22-63 1-41 (461)
93 PRK08013 oxidoreductase; Provi 98.4 1.9E-07 4.1E-12 92.5 5.1 38 20-57 1-38 (400)
94 KOG2844 Dimethylglycine dehydr 98.4 4.2E-06 9.1E-11 84.0 14.1 58 271-331 176-236 (856)
95 PRK09126 hypothetical protein; 98.4 2.1E-07 4.5E-12 91.8 5.0 37 22-58 3-39 (392)
96 PRK08849 2-octaprenyl-3-methyl 98.4 2.1E-07 4.6E-12 91.6 4.9 36 20-55 1-36 (384)
97 PRK07818 dihydrolipoamide dehy 98.4 2.4E-07 5.3E-12 93.5 5.4 43 20-63 2-44 (466)
98 PF00890 FAD_binding_2: FAD bi 98.4 2E-07 4.3E-12 92.8 4.5 54 277-332 139-197 (417)
99 PRK05192 tRNA uridine 5-carbox 98.4 2.4E-07 5.3E-12 94.3 5.1 41 20-60 2-43 (618)
100 TIGR01424 gluta_reduc_2 glutat 98.4 2.2E-07 4.8E-12 93.3 4.8 40 22-62 2-41 (446)
101 PRK07045 putative monooxygenas 98.4 2.7E-07 5.9E-12 90.9 5.1 38 20-57 3-40 (388)
102 TIGR01421 gluta_reduc_1 glutat 98.4 2.6E-07 5.5E-12 92.9 4.9 40 22-62 2-41 (450)
103 PRK08773 2-octaprenyl-3-methyl 98.4 3.1E-07 6.7E-12 90.7 5.3 52 279-333 113-165 (392)
104 PLN02661 Putative thiazole syn 98.4 2.7E-07 5.9E-12 87.9 4.6 41 22-62 92-133 (357)
105 PRK08850 2-octaprenyl-6-methox 98.4 2.7E-07 5.8E-12 91.5 4.8 36 19-54 1-36 (405)
106 PF13738 Pyr_redox_3: Pyridine 98.4 2.3E-07 5.1E-12 82.6 3.9 38 26-63 1-39 (203)
107 PRK06416 dihydrolipoamide dehy 98.4 3E-07 6.4E-12 92.8 4.9 42 21-63 3-44 (462)
108 PRK05976 dihydrolipoamide dehy 98.4 3.4E-07 7.5E-12 92.6 5.3 42 21-63 3-44 (472)
109 PRK06184 hypothetical protein; 98.4 3.8E-07 8.3E-12 93.0 5.4 45 20-64 1-47 (502)
110 TIGR01292 TRX_reduct thioredox 98.4 3.5E-07 7.7E-12 86.5 4.8 40 23-63 1-40 (300)
111 TIGR03315 Se_ygfK putative sel 98.4 4E-07 8.6E-12 98.0 5.7 43 21-63 536-578 (1012)
112 PRK07236 hypothetical protein; 98.4 4E-07 8.6E-12 89.7 5.3 37 20-56 4-40 (386)
113 TIGR02023 BchP-ChlP geranylger 98.4 3.5E-07 7.5E-12 90.2 4.8 32 23-54 1-32 (388)
114 PRK12834 putative FAD-binding 98.4 4.1E-07 8.8E-12 93.7 5.4 42 21-62 3-46 (549)
115 PRK12831 putative oxidoreducta 98.4 5.6E-07 1.2E-11 90.6 6.2 44 19-62 137-180 (464)
116 PF00732 GMC_oxred_N: GMC oxid 98.4 3.5E-07 7.7E-12 86.6 4.4 39 23-61 1-40 (296)
117 TIGR01813 flavo_cyto_c flavocy 98.4 4.2E-07 9.1E-12 91.1 5.1 38 24-61 1-39 (439)
118 PRK08163 salicylate hydroxylas 98.3 4.5E-07 9.8E-12 89.6 5.1 38 21-58 3-40 (396)
119 PRK08020 ubiF 2-octaprenyl-3-m 98.3 4.5E-07 9.8E-12 89.4 4.9 37 20-56 3-39 (391)
120 COG3573 Predicted oxidoreducta 98.3 5.7E-07 1.2E-11 83.2 5.1 42 20-61 3-46 (552)
121 PRK12837 3-ketosteroid-delta-1 98.3 4.7E-07 1E-11 92.4 5.1 41 21-62 6-46 (513)
122 PRK06327 dihydrolipoamide dehy 98.3 5.5E-07 1.2E-11 91.1 5.6 43 21-63 3-51 (475)
123 COG1148 HdrA Heterodisulfide r 98.3 4.2E-07 9.1E-12 87.9 4.4 44 22-65 124-167 (622)
124 COG0665 DadA Glycine/D-amino a 98.3 5.8E-07 1.3E-11 88.4 5.4 58 271-332 145-206 (387)
125 PRK14694 putative mercuric red 98.3 5.7E-07 1.2E-11 90.9 5.3 43 20-63 4-46 (468)
126 TIGR03143 AhpF_homolog putativ 98.3 5.5E-07 1.2E-11 92.8 5.2 42 21-63 3-44 (555)
127 TIGR02028 ChlP geranylgeranyl 98.3 5.9E-07 1.3E-11 88.8 5.2 36 23-58 1-36 (398)
128 PRK12842 putative succinate de 98.3 6.4E-07 1.4E-11 92.7 5.6 43 20-62 7-49 (574)
129 TIGR03364 HpnW_proposed FAD de 98.3 6.6E-07 1.4E-11 87.4 5.4 34 23-56 1-34 (365)
130 PLN02985 squalene monooxygenas 98.3 7.8E-07 1.7E-11 90.6 6.0 40 17-56 38-77 (514)
131 TIGR01988 Ubi-OHases Ubiquinon 98.3 5.6E-07 1.2E-11 88.4 4.8 35 24-58 1-35 (385)
132 PRK13748 putative mercuric red 98.3 5.8E-07 1.3E-11 93.0 5.0 42 21-63 97-138 (561)
133 PRK05732 2-octaprenyl-6-methox 98.3 5.7E-07 1.2E-11 88.7 4.7 35 20-54 1-38 (395)
134 PRK07608 ubiquinone biosynthes 98.3 6.6E-07 1.4E-11 88.1 5.1 37 22-58 5-41 (388)
135 TIGR01790 carotene-cycl lycope 98.3 6.7E-07 1.5E-11 88.1 5.0 37 24-60 1-37 (388)
136 PRK05714 2-octaprenyl-3-methyl 98.3 6.1E-07 1.3E-11 89.0 4.6 35 22-56 2-36 (405)
137 PRK06834 hypothetical protein; 98.3 8.1E-07 1.7E-11 90.1 5.3 46 20-65 1-49 (488)
138 PLN02697 lycopene epsilon cycl 98.3 1.1E-06 2.5E-11 89.2 6.3 48 11-59 98-145 (529)
139 PRK14727 putative mercuric red 98.3 7.4E-07 1.6E-11 90.3 4.9 43 21-63 15-57 (479)
140 PRK06185 hypothetical protein; 98.3 8E-07 1.7E-11 88.2 5.0 36 21-56 5-40 (407)
141 KOG1399 Flavin-containing mono 98.3 8E-07 1.7E-11 88.0 4.8 45 20-64 4-48 (448)
142 PF04820 Trp_halogenase: Trypt 98.3 1.4E-05 3E-10 80.3 13.7 53 279-333 154-207 (454)
143 TIGR02053 MerA mercuric reduct 98.3 8.3E-07 1.8E-11 89.6 5.0 39 23-62 1-39 (463)
144 COG0492 TrxB Thioredoxin reduc 98.3 9.3E-07 2E-11 83.6 4.8 46 20-65 1-46 (305)
145 TIGR02360 pbenz_hydroxyl 4-hyd 98.3 8E-07 1.7E-11 87.7 4.6 35 22-56 2-36 (390)
146 PRK08641 sdhA succinate dehydr 98.3 9.2E-07 2E-11 91.7 5.2 41 20-60 1-41 (589)
147 PRK09853 putative selenate red 98.3 1.3E-06 2.8E-11 93.8 6.3 44 20-63 537-580 (1019)
148 PRK12835 3-ketosteroid-delta-1 98.3 8.7E-07 1.9E-11 91.7 5.0 41 21-61 10-50 (584)
149 PRK06847 hypothetical protein; 98.3 1E-06 2.2E-11 86.4 5.2 37 21-57 3-39 (375)
150 PRK12844 3-ketosteroid-delta-1 98.2 9.9E-07 2.1E-11 90.9 5.2 41 21-61 5-45 (557)
151 PRK12769 putative oxidoreducta 98.2 1.2E-06 2.7E-11 92.0 6.0 43 20-62 325-367 (654)
152 PLN02464 glycerol-3-phosphate 98.2 1.1E-06 2.3E-11 91.7 5.3 41 20-60 69-109 (627)
153 TIGR01316 gltA glutamate synth 98.2 1.5E-06 3.3E-11 87.2 6.3 44 19-62 130-173 (449)
154 PRK12779 putative bifunctional 98.2 1.1E-06 2.3E-11 95.3 5.5 42 21-62 305-346 (944)
155 PTZ00367 squalene epoxidase; P 98.2 1.1E-06 2.4E-11 90.2 5.3 40 16-55 27-66 (567)
156 COG1249 Lpd Pyruvate/2-oxoglut 98.2 1.1E-06 2.3E-11 87.4 5.0 44 20-63 2-45 (454)
157 PRK06617 2-octaprenyl-6-methox 98.2 9.5E-07 2.1E-11 86.6 4.6 34 22-55 1-34 (374)
158 PRK07190 hypothetical protein; 98.2 1.1E-06 2.5E-11 88.9 5.2 44 20-63 3-48 (487)
159 TIGR01984 UbiH 2-polyprenyl-6- 98.2 9.9E-07 2.1E-11 86.7 4.6 53 279-334 105-159 (382)
160 PRK07057 sdhA succinate dehydr 98.2 1.3E-06 2.8E-11 90.6 5.5 44 18-61 8-51 (591)
161 COG0654 UbiH 2-polyprenyl-6-me 98.2 1.1E-06 2.3E-11 86.7 4.6 54 278-334 103-159 (387)
162 PTZ00052 thioredoxin reductase 98.2 1.2E-06 2.7E-11 89.1 4.9 50 280-332 223-272 (499)
163 PRK12809 putative oxidoreducta 98.2 1.8E-06 4E-11 90.4 6.2 47 16-62 304-350 (639)
164 PRK08958 sdhA succinate dehydr 98.2 1.5E-06 3.2E-11 90.0 5.5 41 20-60 5-45 (588)
165 PRK07803 sdhA succinate dehydr 98.2 1.5E-06 3.2E-11 90.8 5.4 39 21-59 7-45 (626)
166 PRK12839 hypothetical protein; 98.2 1.6E-06 3.4E-11 89.5 5.6 44 20-63 6-49 (572)
167 PRK11445 putative oxidoreducta 98.2 1.3E-06 2.7E-11 85.0 4.6 35 22-57 1-35 (351)
168 PRK06753 hypothetical protein; 98.2 1.3E-06 2.9E-11 85.5 4.7 35 24-58 2-36 (373)
169 PRK08243 4-hydroxybenzoate 3-m 98.2 1.3E-06 2.9E-11 86.2 4.6 35 22-56 2-36 (392)
170 PRK07843 3-ketosteroid-delta-1 98.2 1.7E-06 3.6E-11 89.2 5.5 42 21-62 6-47 (557)
171 KOG1298 Squalene monooxygenase 98.2 1.5E-06 3.4E-11 81.8 4.6 36 19-54 42-77 (509)
172 PRK07804 L-aspartate oxidase; 98.2 1.9E-06 4.2E-11 88.4 5.8 40 21-60 15-54 (541)
173 PRK07333 2-octaprenyl-6-methox 98.2 1.4E-06 2.9E-11 86.3 4.5 35 22-56 1-37 (403)
174 PRK06126 hypothetical protein; 98.2 1.6E-06 3.5E-11 89.3 5.3 37 20-56 5-41 (545)
175 PRK08132 FAD-dependent oxidore 98.2 1.7E-06 3.6E-11 89.3 5.2 45 21-65 22-68 (547)
176 TIGR01989 COQ6 Ubiquinone bios 98.2 1.4E-06 3.1E-11 87.2 4.6 34 23-56 1-38 (437)
177 PRK12775 putative trifunctiona 98.2 2E-06 4.3E-11 94.0 5.9 42 21-62 429-470 (1006)
178 PRK06452 sdhA succinate dehydr 98.2 1.8E-06 4E-11 89.1 5.4 41 21-61 4-44 (566)
179 PLN02507 glutathione reductase 98.2 1.8E-06 4E-11 87.7 5.2 44 20-63 23-75 (499)
180 PRK08244 hypothetical protein; 98.2 1.7E-06 3.8E-11 88.0 4.9 43 22-64 2-46 (493)
181 PRK07395 L-aspartate oxidase; 98.2 1.9E-06 4.1E-11 88.6 5.1 43 18-61 5-47 (553)
182 PRK12810 gltD glutamate syntha 98.2 2.7E-06 5.9E-11 86.0 6.0 43 20-62 141-183 (471)
183 PRK07538 hypothetical protein; 98.2 1.9E-06 4.1E-11 85.7 4.8 35 23-57 1-35 (413)
184 PTZ00139 Succinate dehydrogena 98.1 2.3E-06 4.9E-11 89.1 5.4 40 22-61 29-68 (617)
185 PRK09078 sdhA succinate dehydr 98.1 2.1E-06 4.7E-11 89.1 5.2 40 21-60 11-50 (598)
186 TIGR01789 lycopene_cycl lycope 98.1 2.3E-06 4.9E-11 83.8 5.0 41 24-64 1-44 (370)
187 PRK06175 L-aspartate oxidase; 98.1 2.1E-06 4.5E-11 85.8 4.8 39 21-60 3-41 (433)
188 PLN02815 L-aspartate oxidase 98.1 2.8E-06 6.1E-11 87.8 5.9 48 12-60 19-66 (594)
189 TIGR01423 trypano_reduc trypan 98.1 2.2E-06 4.9E-11 86.7 5.0 52 279-332 231-282 (486)
190 TIGR01372 soxA sarcosine oxida 98.1 2.5E-06 5.3E-11 93.6 5.7 43 21-63 162-204 (985)
191 TIGR01320 mal_quin_oxido malat 98.1 2E-06 4.4E-11 86.9 4.5 61 270-332 166-234 (483)
192 PRK06183 mhpA 3-(3-hydroxyphen 98.1 2.6E-06 5.5E-11 87.7 5.3 39 20-58 8-46 (538)
193 PRK06134 putative FAD-binding 98.1 3.1E-06 6.7E-11 87.7 5.8 44 20-63 10-53 (581)
194 PRK02106 choline dehydrogenase 98.1 2.6E-06 5.5E-11 88.1 5.2 37 20-56 3-40 (560)
195 PLN00128 Succinate dehydrogena 98.1 2.5E-06 5.5E-11 88.9 5.1 40 22-61 50-89 (635)
196 PRK07588 hypothetical protein; 98.1 2.5E-06 5.4E-11 84.2 4.7 34 23-56 1-34 (391)
197 PRK05945 sdhA succinate dehydr 98.1 2.3E-06 5E-11 88.6 4.6 41 20-60 1-43 (575)
198 PRK07573 sdhA succinate dehydr 98.1 3E-06 6.4E-11 88.6 5.4 40 21-60 34-73 (640)
199 PRK10262 thioredoxin reductase 98.1 3E-06 6.6E-11 81.3 5.0 42 21-63 5-46 (321)
200 TIGR01318 gltD_gamma_fam gluta 98.1 4.2E-06 9.1E-11 84.5 6.1 43 20-62 139-181 (467)
201 PF00743 FMO-like: Flavin-bind 98.1 2.9E-06 6.3E-11 86.5 4.9 40 24-63 3-42 (531)
202 PLN02546 glutathione reductase 98.1 3.2E-06 6.8E-11 86.8 5.2 43 21-63 78-129 (558)
203 PRK05868 hypothetical protein; 98.1 3.1E-06 6.8E-11 82.9 5.0 35 23-57 2-36 (372)
204 PRK08626 fumarate reductase fl 98.1 3.3E-06 7.1E-11 88.5 5.1 40 21-60 4-43 (657)
205 PRK12778 putative bifunctional 98.1 4.6E-06 9.9E-11 89.2 6.3 42 21-62 430-471 (752)
206 PF05834 Lycopene_cycl: Lycope 98.1 3.5E-06 7.5E-11 82.6 4.9 34 24-57 1-36 (374)
207 KOG2614 Kynurenine 3-monooxyge 98.1 4E-06 8.6E-11 80.2 5.1 47 22-68 2-50 (420)
208 PTZ00306 NADH-dependent fumara 98.1 4E-06 8.8E-11 93.3 5.9 42 20-61 407-448 (1167)
209 PRK15317 alkyl hydroperoxide r 98.1 3.7E-06 7.9E-11 86.1 5.0 41 20-62 209-249 (517)
210 PRK12843 putative FAD-binding 98.1 5.7E-06 1.2E-10 85.7 6.4 42 21-62 15-56 (578)
211 PRK05335 tRNA (uracil-5-)-meth 98.1 3.8E-06 8.2E-11 82.2 4.7 36 23-58 3-38 (436)
212 PRK12814 putative NADPH-depend 98.1 4.8E-06 1E-10 87.4 5.8 42 21-62 192-233 (652)
213 PRK11749 dihydropyrimidine deh 98.1 4.6E-06 1E-10 84.0 5.5 42 21-62 139-180 (457)
214 TIGR01812 sdhA_frdA_Gneg succi 98.1 3.9E-06 8.4E-11 86.9 5.0 38 24-61 1-38 (566)
215 PRK06069 sdhA succinate dehydr 98.1 4.1E-06 8.9E-11 86.8 5.1 41 21-61 4-47 (577)
216 PLN02852 ferredoxin-NADP+ redu 98.0 5.4E-06 1.2E-10 83.3 5.6 42 22-63 26-69 (491)
217 TIGR02462 pyranose_ox pyranose 98.0 4.5E-06 9.8E-11 84.8 5.1 39 23-61 1-39 (544)
218 TIGR00137 gid_trmFO tRNA:m(5)U 98.0 4.3E-06 9.3E-11 82.3 4.6 37 24-60 2-38 (433)
219 TIGR03140 AhpF alkyl hydropero 98.0 5.1E-06 1.1E-10 84.9 5.2 41 20-62 210-250 (515)
220 PRK13339 malate:quinone oxidor 98.0 5E-06 1.1E-10 83.8 5.0 43 20-62 4-48 (497)
221 PRK06475 salicylate hydroxylas 98.0 4.7E-06 1E-10 82.5 4.8 35 23-57 3-37 (400)
222 TIGR00551 nadB L-aspartate oxi 98.0 5E-06 1.1E-10 84.5 5.0 39 22-61 2-40 (488)
223 COG0493 GltD NADPH-dependent g 98.0 6.5E-06 1.4E-10 82.0 5.6 52 12-63 113-164 (457)
224 PRK08071 L-aspartate oxidase; 98.0 5E-06 1.1E-10 84.8 4.9 40 21-61 2-41 (510)
225 PF01134 GIDA: Glucose inhibit 98.0 4.5E-06 9.8E-11 80.9 4.0 44 24-67 1-45 (392)
226 PRK08294 phenol 2-monooxygenas 98.0 5.5E-06 1.2E-10 86.6 5.0 44 20-63 30-76 (634)
227 KOG0399 Glutamate synthase [Am 98.0 6.9E-06 1.5E-10 86.3 5.5 56 7-63 1771-1826(2142)
228 PTZ00153 lipoamide dehydrogena 98.0 5.9E-06 1.3E-10 86.1 5.0 41 22-62 116-157 (659)
229 PLN02927 antheraxanthin epoxid 98.0 6.7E-06 1.5E-10 85.3 5.4 36 20-55 79-114 (668)
230 TIGR01317 GOGAT_sm_gam glutama 98.0 1E-05 2.2E-10 82.1 6.4 42 21-62 142-183 (485)
231 TIGR03219 salicylate_mono sali 98.0 6.5E-06 1.4E-10 81.9 4.9 35 24-58 2-37 (414)
232 PRK06854 adenylylsulfate reduc 98.0 6.4E-06 1.4E-10 85.7 5.0 39 21-59 10-50 (608)
233 PRK08401 L-aspartate oxidase; 98.0 6.9E-06 1.5E-10 82.9 5.0 50 279-332 120-169 (466)
234 PRK06996 hypothetical protein; 98.0 7E-06 1.5E-10 81.2 4.9 39 18-56 7-49 (398)
235 KOG2415 Electron transfer flav 98.0 7.5E-06 1.6E-10 78.0 4.4 45 21-65 75-125 (621)
236 COG1053 SdhA Succinate dehydro 98.0 8.6E-06 1.9E-10 83.3 5.2 45 18-62 2-46 (562)
237 PRK09231 fumarate reductase fl 98.0 7.8E-06 1.7E-10 84.7 5.0 40 22-61 4-45 (582)
238 PRK08275 putative oxidoreducta 98.0 8.2E-06 1.8E-10 84.2 5.0 53 279-332 137-194 (554)
239 TIGR00275 flavoprotein, HI0933 98.0 4.9E-06 1.1E-10 82.3 3.2 57 272-332 97-154 (400)
240 PRK06263 sdhA succinate dehydr 97.9 7.8E-06 1.7E-10 84.1 4.7 40 21-61 6-46 (543)
241 COG3075 GlpB Anaerobic glycero 97.9 7.6E-06 1.7E-10 75.8 4.1 58 280-339 259-319 (421)
242 TIGR01438 TGR thioredoxin and 97.9 1E-05 2.2E-10 82.1 5.0 41 22-62 2-50 (484)
243 TIGR01176 fum_red_Fp fumarate 97.9 9.3E-06 2E-10 84.0 4.8 40 22-61 3-44 (580)
244 PRK05329 anaerobic glycerol-3- 97.9 1E-05 2.2E-10 80.0 4.8 51 280-332 260-312 (422)
245 PRK08205 sdhA succinate dehydr 97.9 1.1E-05 2.5E-10 83.6 5.1 38 21-59 4-41 (583)
246 PRK06567 putative bifunctional 97.9 1.6E-05 3.5E-10 84.7 6.2 41 20-60 381-421 (1028)
247 PRK09077 L-aspartate oxidase; 97.9 1.2E-05 2.5E-10 82.7 5.0 40 21-61 7-46 (536)
248 PF07992 Pyr_redox_2: Pyridine 97.8 1.9E-05 4.1E-10 70.0 4.7 35 24-58 1-35 (201)
249 PRK12771 putative glutamate sy 97.8 2.8E-05 6.1E-10 80.5 6.3 42 21-62 136-177 (564)
250 COG2303 BetA Choline dehydroge 97.8 1.8E-05 4E-10 81.1 4.9 35 20-54 5-39 (542)
251 PRK12770 putative glutamate sy 97.8 3E-05 6.6E-10 75.4 5.5 40 23-62 19-58 (352)
252 PF00070 Pyr_redox: Pyridine n 97.8 4.4E-05 9.6E-10 57.2 5.1 35 24-58 1-35 (80)
253 TIGR02061 aprA adenosine phosp 97.7 3.1E-05 6.6E-10 80.3 5.1 34 24-57 1-38 (614)
254 PTZ00188 adrenodoxin reductase 97.7 4.6E-05 1E-09 75.9 5.6 42 22-63 39-81 (506)
255 TIGR01810 betA choline dehydro 97.7 3E-05 6.4E-10 79.8 4.3 33 24-56 1-34 (532)
256 PRK13984 putative oxidoreducta 97.7 5.3E-05 1.2E-09 79.1 6.2 43 20-62 281-323 (604)
257 PRK13800 putative oxidoreducta 97.7 5.2E-05 1.1E-09 82.6 6.2 37 20-56 11-47 (897)
258 PRK07512 L-aspartate oxidase; 97.7 3.6E-05 7.9E-10 78.6 4.6 52 279-332 136-191 (513)
259 PLN02785 Protein HOTHEAD 97.7 4.3E-05 9.3E-10 79.0 5.1 35 21-56 54-88 (587)
260 TIGR00136 gidA glucose-inhibit 97.7 4.3E-05 9.4E-10 78.1 5.0 37 23-59 1-37 (617)
261 TIGR01811 sdhA_Bsu succinate d 97.7 3.3E-05 7.2E-10 80.3 4.2 36 25-60 1-36 (603)
262 PRK07845 flavoprotein disulfid 97.7 4.7E-05 1E-09 77.0 5.1 51 279-332 218-268 (466)
263 TIGR03452 mycothione_red mycot 97.7 4.6E-05 9.9E-10 76.7 4.7 39 22-63 2-40 (452)
264 PRK06912 acoL dihydrolipoamide 97.6 5.5E-05 1.2E-09 76.3 5.2 38 24-62 2-39 (458)
265 PRK07846 mycothione reductase; 97.6 5E-05 1.1E-09 76.4 4.8 39 22-63 1-39 (451)
266 PRK08255 salicylyl-CoA 5-hydro 97.6 4.9E-05 1.1E-09 81.4 4.8 34 24-57 2-37 (765)
267 KOG1335 Dihydrolipoamide dehyd 97.6 6E-05 1.3E-09 71.3 4.3 43 21-63 38-80 (506)
268 KOG2853 Possible oxidoreductas 97.6 5.7E-05 1.2E-09 70.3 4.1 46 22-67 86-135 (509)
269 TIGR03378 glycerol3P_GlpB glyc 97.6 7.2E-05 1.6E-09 73.4 4.4 99 279-379 263-376 (419)
270 COG0445 GidA Flavin-dependent 97.5 8.9E-05 1.9E-09 73.4 3.8 35 20-54 2-36 (621)
271 KOG2404 Fumarate reductase, fl 97.4 0.00018 3.9E-09 66.6 4.6 41 21-61 8-48 (477)
272 COG4716 Myosin-crossreactive a 97.4 0.0016 3.5E-08 61.7 10.7 43 21-63 21-67 (587)
273 PRK09897 hypothetical protein; 97.3 0.00026 5.6E-09 72.2 4.8 41 23-63 2-45 (534)
274 KOG2665 Predicted FAD-dependen 97.3 0.00022 4.7E-09 65.9 3.3 44 18-61 44-89 (453)
275 PRK09754 phenylpropionate diox 97.2 0.00041 8.9E-09 68.6 5.0 51 280-334 187-237 (396)
276 KOG2311 NAD/FAD-utilizing prot 97.2 0.00043 9.2E-09 67.4 4.3 47 8-54 12-60 (679)
277 KOG2960 Protein involved in th 97.1 0.00014 3.1E-09 63.4 0.9 40 23-62 77-118 (328)
278 PRK09564 coenzyme A disulfide 97.1 0.00054 1.2E-08 68.8 4.4 51 279-333 191-241 (444)
279 PTZ00318 NADH dehydrogenase-li 97.1 0.00072 1.6E-08 67.5 5.1 37 20-56 8-44 (424)
280 KOG1238 Glucose dehydrogenase/ 97.0 0.00083 1.8E-08 68.2 5.1 38 20-57 55-93 (623)
281 COG0029 NadB Aspartate oxidase 97.0 0.00064 1.4E-08 66.8 4.1 33 24-57 9-41 (518)
282 COG0446 HcaD Uncharacterized N 96.9 0.00084 1.8E-08 66.2 4.5 40 23-62 137-176 (415)
283 PRK13512 coenzyme A disulfide 96.9 0.00095 2.1E-08 66.9 4.6 48 279-333 189-236 (438)
284 KOG0405 Pyridine nucleotide-di 96.9 0.0013 2.8E-08 61.8 5.0 43 21-63 19-61 (478)
285 KOG4716 Thioredoxin reductase 96.9 0.00098 2.1E-08 62.3 3.8 33 21-53 18-50 (503)
286 COG1206 Gid NAD(FAD)-utilizing 96.7 0.0016 3.6E-08 60.6 3.8 37 23-59 4-40 (439)
287 PF13454 NAD_binding_9: FAD-NA 96.5 0.0031 6.6E-08 53.7 4.0 36 26-62 1-42 (156)
288 TIGR02352 thiamin_ThiO glycine 96.5 0.01 2.2E-07 56.9 8.1 59 271-332 126-187 (337)
289 PF07156 Prenylcys_lyase: Pren 96.5 0.039 8.5E-07 53.7 11.9 114 206-336 68-186 (368)
290 KOG3855 Monooxygenase involved 96.4 0.0043 9.3E-08 59.7 4.6 40 20-59 34-79 (481)
291 PF03721 UDPG_MGDP_dh_N: UDP-g 96.4 0.0041 8.8E-08 54.6 4.1 33 24-56 2-34 (185)
292 PF06039 Mqo: Malate:quinone o 96.3 0.0044 9.5E-08 60.9 4.5 60 272-333 170-239 (488)
293 TIGR03169 Nterm_to_SelD pyridi 96.3 0.0049 1.1E-07 60.1 4.5 49 280-335 192-240 (364)
294 COG1252 Ndh NADH dehydrogenase 96.2 0.006 1.3E-07 59.7 4.7 46 279-331 209-255 (405)
295 COG2509 Uncharacterized FAD-de 96.1 0.017 3.7E-07 56.4 7.3 58 278-337 172-229 (486)
296 PRK09754 phenylpropionate diox 96.1 0.0073 1.6E-07 59.7 4.7 39 23-61 145-183 (396)
297 KOG0042 Glycerol-3-phosphate d 96.0 0.0034 7.3E-08 62.3 2.1 39 22-60 67-105 (680)
298 PF02737 3HCDH_N: 3-hydroxyacy 95.8 0.012 2.5E-07 51.4 4.5 33 24-56 1-33 (180)
299 PF01210 NAD_Gly3P_dh_N: NAD-d 95.8 0.011 2.3E-07 50.4 4.1 32 24-55 1-32 (157)
300 COG4529 Uncharacterized protei 95.8 0.011 2.4E-07 58.3 4.7 40 22-62 1-44 (474)
301 KOG2852 Possible oxidoreductas 95.7 0.0068 1.5E-07 55.7 2.6 41 22-62 10-56 (380)
302 PRK04965 NADH:flavorubredoxin 95.7 0.014 3.1E-07 57.2 4.8 51 280-333 184-234 (377)
303 PRK01438 murD UDP-N-acetylmura 95.7 0.013 2.8E-07 59.5 4.6 34 23-56 17-50 (480)
304 PRK04965 NADH:flavorubredoxin 95.6 0.015 3.3E-07 57.0 4.9 38 23-60 142-179 (377)
305 TIGR03197 MnmC_Cterm tRNA U-34 95.6 0.069 1.5E-06 52.4 9.4 58 271-332 124-184 (381)
306 KOG1800 Ferredoxin/adrenodoxin 95.6 0.014 3.1E-07 55.6 4.2 44 21-64 19-64 (468)
307 PRK07251 pyridine nucleotide-d 95.5 0.02 4.3E-07 57.4 5.2 39 23-61 158-196 (438)
308 PF13434 K_oxygenase: L-lysine 95.4 0.011 2.3E-07 57.2 3.0 36 22-57 2-38 (341)
309 PRK05976 dihydrolipoamide dehy 95.4 0.019 4.1E-07 58.2 4.7 37 23-59 181-217 (472)
310 COG3634 AhpF Alkyl hydroperoxi 95.4 0.0089 1.9E-07 56.3 2.0 40 21-62 210-249 (520)
311 PRK02705 murD UDP-N-acetylmura 95.3 0.021 4.5E-07 57.7 4.5 34 24-57 2-35 (459)
312 PRK14989 nitrite reductase sub 95.3 0.023 5E-07 61.5 5.1 54 280-334 188-241 (847)
313 TIGR01350 lipoamide_DH dihydro 95.2 0.022 4.9E-07 57.4 4.7 37 23-59 171-207 (461)
314 PRK06129 3-hydroxyacyl-CoA deh 95.2 0.02 4.4E-07 54.5 4.1 33 24-56 4-36 (308)
315 PRK06249 2-dehydropantoate 2-r 95.2 0.029 6.2E-07 53.6 5.1 36 20-55 3-38 (313)
316 PF02558 ApbA: Ketopantoate re 95.2 0.024 5.2E-07 47.7 4.1 31 25-55 1-31 (151)
317 PRK11064 wecC UDP-N-acetyl-D-m 95.1 0.025 5.5E-07 56.2 4.4 35 22-56 3-37 (415)
318 TIGR02053 MerA mercuric reduct 95.1 0.026 5.7E-07 57.0 4.6 38 23-60 167-204 (463)
319 PRK06370 mercuric reductase; V 95.0 0.032 6.9E-07 56.4 5.0 38 23-60 172-209 (463)
320 PRK08293 3-hydroxybutyryl-CoA 95.0 0.031 6.7E-07 52.7 4.6 33 23-55 4-36 (287)
321 TIGR01421 gluta_reduc_1 glutat 95.0 0.03 6.5E-07 56.4 4.7 37 23-59 167-203 (450)
322 PRK14106 murD UDP-N-acetylmura 94.9 0.037 8.1E-07 55.6 5.2 35 21-55 4-38 (450)
323 PRK06467 dihydrolipoamide dehy 94.9 0.032 7E-07 56.5 4.7 38 23-60 175-212 (471)
324 PRK06416 dihydrolipoamide dehy 94.8 0.034 7.4E-07 56.1 4.8 38 23-60 173-210 (462)
325 PRK07818 dihydrolipoamide dehy 94.8 0.034 7.4E-07 56.2 4.7 38 23-60 173-210 (466)
326 TIGR02374 nitri_red_nirB nitri 94.8 0.028 6.1E-07 60.6 4.3 52 281-335 184-235 (785)
327 PRK06115 dihydrolipoamide dehy 94.8 0.036 7.9E-07 56.0 4.8 38 23-60 175-212 (466)
328 PRK13512 coenzyme A disulfide 94.8 0.034 7.3E-07 55.8 4.6 38 23-60 149-186 (438)
329 PRK07846 mycothione reductase; 94.8 0.036 7.9E-07 55.8 4.8 37 23-59 167-203 (451)
330 PRK06912 acoL dihydrolipoamide 94.8 0.036 7.9E-07 55.9 4.8 37 23-59 171-207 (458)
331 PRK06292 dihydrolipoamide dehy 94.7 0.04 8.6E-07 55.6 4.9 38 23-60 170-207 (460)
332 PF13738 Pyr_redox_3: Pyridine 94.7 0.083 1.8E-06 46.6 6.3 51 279-332 82-132 (203)
333 PRK05249 soluble pyridine nucl 94.7 0.046 9.9E-07 55.2 5.1 38 23-60 176-213 (461)
334 PRK09260 3-hydroxybutyryl-CoA 94.6 0.034 7.4E-07 52.4 3.9 33 24-56 3-35 (288)
335 PRK07819 3-hydroxybutyryl-CoA 94.6 0.043 9.3E-07 51.7 4.6 34 24-57 7-40 (286)
336 PRK07530 3-hydroxybutyryl-CoA 94.6 0.048 1E-06 51.5 4.9 34 22-55 4-37 (292)
337 TIGR03385 CoA_CoA_reduc CoA-di 94.6 0.042 9.2E-07 54.8 4.6 36 23-58 138-173 (427)
338 TIGR03378 glycerol3P_GlpB glyc 94.5 0.15 3.3E-06 50.4 8.1 33 23-55 1-33 (419)
339 COG0569 TrkA K+ transport syst 94.5 0.043 9.4E-07 49.7 4.1 33 24-56 2-34 (225)
340 TIGR02374 nitri_red_nirB nitri 94.4 0.044 9.5E-07 59.1 4.7 36 24-59 142-177 (785)
341 PRK05808 3-hydroxybutyryl-CoA 94.4 0.047 1E-06 51.3 4.2 34 23-56 4-37 (282)
342 PRK06327 dihydrolipoamide dehy 94.4 0.057 1.2E-06 54.8 5.1 38 23-60 184-221 (475)
343 TIGR03140 AhpF alkyl hydropero 94.2 0.054 1.2E-06 55.6 4.5 36 23-58 353-388 (515)
344 COG0686 Ald Alanine dehydrogen 94.2 0.039 8.4E-07 51.4 3.0 43 23-65 169-219 (371)
345 TIGR03452 mycothione_red mycot 94.1 0.064 1.4E-06 54.0 4.8 37 23-59 170-206 (452)
346 PRK07066 3-hydroxybutyryl-CoA 94.1 0.059 1.3E-06 51.5 4.2 33 24-56 9-41 (321)
347 PRK04148 hypothetical protein; 94.0 0.051 1.1E-06 44.7 3.1 33 23-56 18-50 (134)
348 PRK07845 flavoprotein disulfid 94.0 0.08 1.7E-06 53.6 5.2 39 23-61 178-216 (466)
349 COG1004 Ugd Predicted UDP-gluc 94.0 0.06 1.3E-06 51.9 4.0 32 24-55 2-33 (414)
350 PRK06035 3-hydroxyacyl-CoA deh 94.0 0.067 1.5E-06 50.5 4.4 34 23-56 4-37 (291)
351 TIGR01316 gltA glutamate synth 94.0 0.065 1.4E-06 53.9 4.5 34 23-56 273-306 (449)
352 PRK09564 coenzyme A disulfide 94.0 0.067 1.5E-06 53.7 4.6 37 23-59 150-186 (444)
353 PRK10262 thioredoxin reductase 93.8 0.079 1.7E-06 50.7 4.7 35 23-57 147-181 (321)
354 PF01262 AlaDh_PNT_C: Alanine 93.8 0.089 1.9E-06 45.3 4.5 33 23-55 21-53 (168)
355 PRK14989 nitrite reductase sub 93.8 0.072 1.6E-06 57.8 4.6 36 24-59 147-182 (847)
356 PTZ00153 lipoamide dehydrogena 93.8 0.076 1.7E-06 55.8 4.7 37 24-60 314-350 (659)
357 TIGR01424 gluta_reduc_2 glutat 93.8 0.081 1.7E-06 53.2 4.7 37 23-59 167-203 (446)
358 PF00890 FAD_binding_2: FAD bi 93.7 0.16 3.5E-06 50.4 6.8 36 24-59 1-36 (417)
359 PTZ00058 glutathione reductase 93.7 0.074 1.6E-06 54.9 4.5 37 23-59 238-274 (561)
360 PRK15317 alkyl hydroperoxide r 93.7 0.077 1.7E-06 54.4 4.6 35 23-57 352-386 (517)
361 PRK06522 2-dehydropantoate 2-r 93.6 0.083 1.8E-06 50.0 4.3 32 24-55 2-33 (304)
362 TIGR03143 AhpF_homolog putativ 93.6 0.084 1.8E-06 54.7 4.5 35 23-57 144-178 (555)
363 COG1249 Lpd Pyruvate/2-oxoglut 93.6 0.094 2E-06 52.5 4.7 38 24-61 175-212 (454)
364 cd05292 LDH_2 A subgroup of L- 93.5 0.1 2.2E-06 49.8 4.6 32 24-55 2-35 (308)
365 PRK06130 3-hydroxybutyryl-CoA 93.4 0.1 2.2E-06 49.7 4.7 33 23-55 5-37 (311)
366 TIGR03026 NDP-sugDHase nucleot 93.4 0.082 1.8E-06 52.6 4.1 33 24-56 2-34 (411)
367 PLN02507 glutathione reductase 93.4 0.098 2.1E-06 53.4 4.7 36 23-58 204-239 (499)
368 PRK12831 putative oxidoreducta 93.4 0.094 2E-06 53.0 4.5 34 23-56 282-315 (464)
369 TIGR03862 flavo_PP4765 unchara 93.4 0.52 1.1E-05 46.1 9.4 57 271-332 77-135 (376)
370 PRK12770 putative glutamate sy 93.4 0.09 2E-06 51.1 4.2 34 23-56 173-207 (352)
371 PLN02545 3-hydroxybutyryl-CoA 93.4 0.12 2.6E-06 48.8 5.0 33 23-55 5-37 (295)
372 cd01080 NAD_bind_m-THF_DH_Cycl 93.4 0.14 3.1E-06 44.0 4.9 34 21-54 43-77 (168)
373 PRK08010 pyridine nucleotide-d 93.3 0.12 2.7E-06 51.7 5.2 38 23-60 159-196 (441)
374 PRK06116 glutathione reductase 93.3 0.11 2.4E-06 52.3 4.8 36 23-58 168-203 (450)
375 PRK00141 murD UDP-N-acetylmura 93.3 0.11 2.5E-06 52.5 4.9 43 10-54 5-47 (473)
376 PRK08229 2-dehydropantoate 2-r 93.2 0.096 2.1E-06 50.6 4.1 32 24-55 4-35 (341)
377 TIGR01763 MalateDH_bact malate 93.1 0.13 2.8E-06 49.0 4.7 33 24-56 3-36 (305)
378 TIGR03377 glycerol3P_GlpA glyc 93.1 0.28 6E-06 50.4 7.4 59 271-332 118-184 (516)
379 TIGR01320 mal_quin_oxido malat 93.0 0.29 6.2E-06 49.8 7.3 40 23-62 1-42 (483)
380 KOG3923 D-aspartate oxidase [A 93.0 0.1 2.2E-06 48.4 3.6 33 22-54 3-42 (342)
381 PLN02353 probable UDP-glucose 93.0 0.11 2.4E-06 52.3 4.3 34 23-56 2-37 (473)
382 TIGR01292 TRX_reduct thioredox 93.0 0.13 2.7E-06 48.4 4.5 35 23-57 142-176 (300)
383 PLN02546 glutathione reductase 93.0 0.13 2.9E-06 53.1 4.9 38 23-60 253-290 (558)
384 PRK12921 2-dehydropantoate 2-r 93.0 0.12 2.6E-06 49.0 4.2 30 24-53 2-31 (305)
385 PRK05708 2-dehydropantoate 2-r 92.9 0.12 2.7E-06 49.1 4.3 32 23-54 3-34 (305)
386 PRK13748 putative mercuric red 92.9 0.14 3E-06 53.1 4.9 35 23-57 271-305 (561)
387 PRK00094 gpsA NAD(P)H-dependen 92.8 0.15 3.2E-06 48.9 4.6 32 24-55 3-34 (325)
388 KOG0404 Thioredoxin reductase 92.8 0.12 2.7E-06 45.8 3.7 42 22-63 8-53 (322)
389 PRK14694 putative mercuric red 92.7 0.16 3.4E-06 51.4 5.0 33 23-55 179-211 (468)
390 PF03446 NAD_binding_2: NAD bi 92.6 0.18 3.9E-06 43.1 4.6 33 23-55 2-34 (163)
391 PRK14727 putative mercuric red 92.5 0.17 3.8E-06 51.3 5.0 34 23-56 189-222 (479)
392 TIGR00518 alaDH alanine dehydr 92.5 0.16 3.5E-06 49.6 4.5 33 23-55 168-200 (370)
393 PRK14618 NAD(P)H-dependent gly 92.4 0.19 4.2E-06 48.3 5.0 33 23-55 5-37 (328)
394 COG3634 AhpF Alkyl hydroperoxi 92.4 0.1 2.2E-06 49.4 2.8 53 4-56 332-388 (520)
395 PRK06134 putative FAD-binding 92.4 0.39 8.4E-06 50.1 7.5 52 279-332 217-272 (581)
396 COG1748 LYS9 Saccharopine dehy 92.4 0.17 3.7E-06 49.3 4.5 45 23-67 2-55 (389)
397 PRK07121 hypothetical protein; 92.3 0.41 9E-06 48.7 7.5 55 277-332 175-233 (492)
398 PRK12409 D-amino acid dehydrog 92.3 0.62 1.3E-05 46.1 8.6 60 270-332 185-252 (410)
399 PRK11199 tyrA bifunctional cho 92.3 0.2 4.3E-06 49.1 4.9 41 15-55 91-132 (374)
400 PLN02695 GDP-D-mannose-3',5'-e 92.3 0.25 5.3E-06 48.4 5.5 43 12-54 11-54 (370)
401 PF02254 TrkA_N: TrkA-N domain 92.2 0.23 5.1E-06 39.5 4.5 32 25-56 1-32 (116)
402 PRK14619 NAD(P)H-dependent gly 92.2 0.22 4.7E-06 47.5 5.0 33 23-55 5-37 (308)
403 PF13241 NAD_binding_7: Putati 92.1 0.13 2.9E-06 40.3 2.8 36 20-55 5-40 (103)
404 PTZ00052 thioredoxin reductase 92.0 0.2 4.3E-06 51.2 4.6 31 24-54 184-214 (499)
405 PRK07417 arogenate dehydrogena 91.9 0.19 4.1E-06 47.1 4.1 32 24-55 2-33 (279)
406 TIGR01470 cysG_Nterm siroheme 91.9 0.22 4.8E-06 44.4 4.3 34 22-55 9-42 (205)
407 PRK11749 dihydropyrimidine deh 91.9 0.2 4.3E-06 50.5 4.5 34 23-56 274-308 (457)
408 PF13478 XdhC_C: XdhC Rossmann 91.8 0.2 4.4E-06 41.4 3.7 32 25-56 1-32 (136)
409 PRK15057 UDP-glucose 6-dehydro 91.8 0.2 4.2E-06 49.4 4.2 32 24-56 2-33 (388)
410 PRK01710 murD UDP-N-acetylmura 91.7 0.21 4.6E-06 50.4 4.5 32 24-55 16-47 (458)
411 PRK06719 precorrin-2 dehydroge 91.7 0.26 5.6E-06 42.0 4.3 33 20-52 11-43 (157)
412 TIGR01438 TGR thioredoxin and 91.7 0.23 4.9E-06 50.6 4.7 31 24-54 182-212 (484)
413 PRK06718 precorrin-2 dehydroge 91.6 0.25 5.4E-06 43.9 4.4 33 21-53 9-41 (202)
414 COG2509 Uncharacterized FAD-de 91.6 0.18 3.8E-06 49.6 3.6 43 18-60 14-61 (486)
415 PRK10157 putative oxidoreducta 91.6 0.59 1.3E-05 46.7 7.5 49 280-331 109-157 (428)
416 PF10727 Rossmann-like: Rossma 91.6 0.15 3.2E-06 41.7 2.6 37 20-56 8-44 (127)
417 cd01075 NAD_bind_Leu_Phe_Val_D 91.5 0.38 8.2E-06 42.7 5.4 35 20-54 26-60 (200)
418 KOG3851 Sulfide:quinone oxidor 91.5 0.19 4.1E-06 47.1 3.5 36 21-56 38-75 (446)
419 TIGR01423 trypano_reduc trypan 91.4 0.24 5.3E-06 50.3 4.6 37 23-59 188-227 (486)
420 PRK04690 murD UDP-N-acetylmura 91.4 0.23 5E-06 50.3 4.4 34 23-56 9-42 (468)
421 PTZ00318 NADH dehydrogenase-li 91.3 0.27 5.9E-06 49.1 4.7 37 24-60 175-225 (424)
422 PRK04308 murD UDP-N-acetylmura 91.3 0.32 7E-06 48.8 5.3 35 23-57 6-40 (445)
423 TIGR02279 PaaC-3OHAcCoADH 3-hy 91.3 0.25 5.4E-06 50.3 4.5 34 23-56 6-39 (503)
424 PRK14620 NAD(P)H-dependent gly 91.2 0.27 5.9E-06 47.2 4.5 32 24-55 2-33 (326)
425 PRK08773 2-octaprenyl-3-methyl 91.2 0.75 1.6E-05 45.2 7.7 38 20-57 4-41 (392)
426 PLN02464 glycerol-3-phosphate 91.2 2.1 4.6E-05 45.0 11.4 54 279-332 232-290 (627)
427 PRK12266 glpD glycerol-3-phosp 91.1 2.3 4.9E-05 43.6 11.3 51 279-332 155-210 (508)
428 PRK12843 putative FAD-binding 91.1 0.75 1.6E-05 47.9 7.9 52 279-332 221-276 (578)
429 KOG2304 3-hydroxyacyl-CoA dehy 91.1 0.25 5.4E-06 44.0 3.6 35 22-56 11-45 (298)
430 PRK05329 anaerobic glycerol-3- 91.0 0.91 2E-05 45.2 8.0 34 22-55 2-35 (422)
431 PRK02472 murD UDP-N-acetylmura 91.0 0.32 6.9E-06 48.9 4.9 33 23-55 6-38 (447)
432 PF01134 GIDA: Glucose inhibit 91.0 0.98 2.1E-05 44.3 8.0 53 279-333 95-147 (392)
433 PRK07531 bifunctional 3-hydrox 91.0 0.29 6.3E-06 49.9 4.6 32 24-55 6-37 (495)
434 PRK12835 3-ketosteroid-delta-1 90.9 0.71 1.5E-05 48.1 7.5 53 278-331 212-268 (584)
435 TIGR01915 npdG NADPH-dependent 90.9 0.32 6.9E-06 43.8 4.4 32 24-55 2-34 (219)
436 PF01488 Shikimate_DH: Shikima 90.9 0.4 8.6E-06 39.6 4.6 33 22-54 12-45 (135)
437 PRK08268 3-hydroxy-acyl-CoA de 90.9 0.29 6.2E-06 50.0 4.5 34 23-56 8-41 (507)
438 PRK12778 putative bifunctional 90.8 0.26 5.7E-06 53.0 4.4 34 23-56 571-605 (752)
439 PRK11730 fadB multifunctional 90.8 0.24 5.2E-06 52.9 3.9 34 23-56 314-347 (715)
440 PRK03369 murD UDP-N-acetylmura 90.8 0.3 6.4E-06 49.8 4.5 31 24-54 14-44 (488)
441 COG3486 IucD Lysine/ornithine 90.8 0.31 6.8E-06 47.3 4.3 39 19-57 2-41 (436)
442 TIGR02354 thiF_fam2 thiamine b 90.7 0.38 8.3E-06 42.7 4.6 33 22-54 21-54 (200)
443 cd05291 HicDH_like L-2-hydroxy 90.6 0.35 7.6E-06 46.0 4.6 33 24-56 2-36 (306)
444 PRK04176 ribulose-1,5-biphosph 90.5 0.94 2E-05 41.9 7.1 52 279-331 104-166 (257)
445 PRK06847 hypothetical protein; 90.4 0.89 1.9E-05 44.3 7.4 51 279-332 107-157 (375)
446 COG0771 MurD UDP-N-acetylmuram 90.4 0.3 6.5E-06 48.6 4.0 36 22-57 7-42 (448)
447 PRK06223 malate dehydrogenase; 90.4 0.39 8.5E-06 45.6 4.7 34 23-56 3-37 (307)
448 PRK09424 pntA NAD(P) transhydr 90.4 0.3 6.6E-06 49.5 4.1 34 22-55 165-198 (509)
449 TIGR01813 flavo_cyto_c flavocy 90.4 0.73 1.6E-05 46.2 6.9 53 279-332 130-186 (439)
450 cd01339 LDH-like_MDH L-lactate 90.3 0.33 7.1E-06 46.1 4.1 31 25-55 1-32 (300)
451 COG3380 Predicted NAD/FAD-depe 90.3 0.1 2.2E-06 47.8 0.6 96 274-377 103-200 (331)
452 TIGR01505 tartro_sem_red 2-hyd 90.2 0.33 7.3E-06 45.7 4.1 32 24-55 1-32 (291)
453 TIGR02437 FadB fatty oxidation 90.2 0.33 7.1E-06 51.8 4.4 34 23-56 314-347 (714)
454 COG1250 FadB 3-hydroxyacyl-CoA 90.2 0.37 8E-06 45.5 4.2 32 23-54 4-35 (307)
455 PF00070 Pyr_redox: Pyridine n 90.2 0.92 2E-05 33.4 5.6 42 278-322 39-80 (80)
456 PRK15116 sulfur acceptor prote 90.1 0.45 9.8E-06 44.2 4.7 39 22-60 30-69 (268)
457 PRK03803 murD UDP-N-acetylmura 90.0 0.43 9.4E-06 48.0 4.9 38 18-55 2-39 (448)
458 PRK13339 malate:quinone oxidor 90.0 1 2.2E-05 45.9 7.5 62 269-332 171-241 (497)
459 PRK07333 2-octaprenyl-6-methox 89.9 1 2.2E-05 44.3 7.5 51 279-332 111-161 (403)
460 TIGR01984 UbiH 2-polyprenyl-6- 89.9 1.2 2.5E-05 43.6 7.8 34 24-57 1-35 (382)
461 PRK00683 murD UDP-N-acetylmura 89.8 0.37 8.1E-06 48.0 4.2 33 23-55 4-36 (418)
462 TIGR01988 Ubi-OHases Ubiquinon 89.8 1 2.3E-05 43.8 7.3 53 279-334 106-160 (385)
463 COG0654 UbiH 2-polyprenyl-6-me 89.7 0.96 2.1E-05 44.5 7.0 33 22-54 2-34 (387)
464 PRK15461 NADH-dependent gamma- 89.6 0.41 8.8E-06 45.3 4.1 32 24-55 3-34 (296)
465 TIGR02441 fa_ox_alpha_mit fatt 89.4 0.54 1.2E-05 50.3 5.2 34 23-56 336-369 (737)
466 PRK08306 dipicolinate synthase 89.4 0.5 1.1E-05 44.7 4.5 34 22-55 152-185 (296)
467 PRK07045 putative monooxygenas 89.2 1.3 2.9E-05 43.4 7.6 53 280-333 107-161 (388)
468 TIGR00292 thiazole biosynthesi 89.2 1.5 3.3E-05 40.4 7.5 54 279-334 100-167 (254)
469 PRK10015 oxidoreductase; Provi 89.2 1.2 2.7E-05 44.5 7.4 50 280-332 109-158 (429)
470 cd00401 AdoHcyase S-adenosyl-L 89.2 0.5 1.1E-05 46.7 4.4 33 23-55 203-235 (413)
471 PRK05714 2-octaprenyl-3-methyl 89.1 1.3 2.8E-05 43.8 7.5 51 280-333 113-164 (405)
472 PRK12779 putative bifunctional 89.1 0.46 9.9E-06 52.3 4.6 34 23-56 448-481 (944)
473 PRK06834 hypothetical protein; 89.1 1.3 2.8E-05 45.1 7.5 52 279-333 100-152 (488)
474 TIGR02964 xanthine_xdhC xanthi 89.0 0.64 1.4E-05 42.7 4.8 34 23-56 101-134 (246)
475 PTZ00082 L-lactate dehydrogena 88.9 0.67 1.5E-05 44.4 5.1 35 23-57 7-42 (321)
476 PRK12844 3-ketosteroid-delta-1 88.9 1.3 2.8E-05 45.9 7.6 53 278-332 207-263 (557)
477 PRK12842 putative succinate de 88.8 1.2 2.6E-05 46.4 7.2 52 279-332 214-269 (574)
478 PLN02657 3,8-divinyl protochlo 88.8 1 2.2E-05 44.5 6.3 41 15-55 53-94 (390)
479 TIGR00275 flavoprotein, HI0933 88.7 2.2 4.8E-05 42.2 8.8 37 26-62 1-37 (400)
480 cd05191 NAD_bind_amino_acid_DH 88.7 1 2.2E-05 33.8 5.0 32 22-53 23-55 (86)
481 PRK01368 murD UDP-N-acetylmura 88.7 0.48 1E-05 47.7 4.1 31 23-54 7-37 (454)
482 PRK02006 murD UDP-N-acetylmura 88.7 0.51 1.1E-05 48.2 4.3 32 24-55 9-40 (498)
483 PRK11559 garR tartronate semia 88.6 0.57 1.2E-05 44.2 4.3 32 24-55 4-35 (296)
484 TIGR02032 GG-red-SF geranylger 88.6 1.5 3.3E-05 40.7 7.3 51 279-332 91-142 (295)
485 PTZ00142 6-phosphogluconate de 88.5 0.49 1.1E-05 47.8 4.0 34 23-56 2-35 (470)
486 TIGR02440 FadJ fatty oxidation 88.4 0.48 1E-05 50.4 4.0 34 23-56 305-339 (699)
487 cd01065 NAD_bind_Shikimate_DH 88.3 0.88 1.9E-05 38.1 4.9 33 23-55 20-53 (155)
488 PRK12549 shikimate 5-dehydroge 88.3 0.68 1.5E-05 43.5 4.5 33 23-55 128-161 (284)
489 TIGR01816 sdhA_forward succina 88.2 1.5 3.2E-05 45.6 7.5 52 279-332 119-175 (565)
490 PRK06175 L-aspartate oxidase; 88.2 1.7 3.6E-05 43.6 7.6 52 279-332 128-183 (433)
491 PLN02256 arogenate dehydrogena 88.1 0.75 1.6E-05 43.7 4.8 34 22-55 36-69 (304)
492 PRK00421 murC UDP-N-acetylmura 88.1 0.49 1.1E-05 47.8 3.8 33 24-56 9-42 (461)
493 PRK07843 3-ketosteroid-delta-1 88.1 1.7 3.6E-05 45.2 7.7 52 279-332 208-263 (557)
494 cd01078 NAD_bind_H4MPT_DH NADP 88.0 0.93 2E-05 39.8 5.1 33 22-54 28-61 (194)
495 PLN02172 flavin-containing mon 88.0 0.52 1.1E-05 47.6 3.8 34 23-56 205-238 (461)
496 PRK12839 hypothetical protein; 88.0 1.5 3.3E-05 45.5 7.4 53 279-332 214-270 (572)
497 PRK11154 fadJ multifunctional 87.7 0.61 1.3E-05 49.8 4.3 33 23-55 310-343 (708)
498 PRK07190 hypothetical protein; 87.7 1.7 3.8E-05 44.2 7.4 51 280-333 110-161 (487)
499 COG1252 Ndh NADH dehydrogenase 87.7 1.1 2.4E-05 44.1 5.7 35 22-56 3-39 (405)
500 PLN02712 arogenate dehydrogena 87.6 1 2.2E-05 47.6 5.8 35 21-55 51-85 (667)
No 1
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=100.00 E-value=3.1e-55 Score=425.76 Aligned_cols=337 Identities=35% Similarity=0.626 Sum_probs=259.7
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccccc
Q 015413 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS 98 (407)
Q Consensus 19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (407)
|+++|||||+||||.+++.|++|+++|++|+|+|+|++|||.+.|+++.++.+|....... .
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~------------------~ 62 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWT------------------P 62 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCH------------------H
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccc------------------c
Confidence 3578999999999999999999999999999999999999999999999887786543110 0
Q ss_pred ccccCCCCceEEecCCCeEEeeCcHHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChHHHHHH
Q 015413 99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178 (407)
Q Consensus 99 ~~~~~~~~~~~idl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l 178 (407)
......+|+|++||. |+++++++.++++|.++++.+|+||+.+++.|++. +|++.++|+++.++|+++.+++.+||++
T Consensus 63 ~~~~~~sR~ynIDL~-PKll~a~g~LV~lLi~S~V~rYLEFk~V~~~~v~~-~~~l~kVP~sr~dvf~s~~lsl~eKR~l 140 (438)
T PF00996_consen 63 PESLGRSRDYNIDLI-PKLLYARGPLVKLLISSGVTRYLEFKAVDGSYVYK-NGKLHKVPCSREDVFKSKLLSLFEKRRL 140 (438)
T ss_dssp HHHHHTGGGC-EESS---BEETTSHHHHHHHHCTGGGGSEEEEESEEEEEE-TTEEEE--SSHHHHHC-TTS-HHHHHHH
T ss_pred ccccccccceeEecc-hHhhhccCHHHHHHHhCCcccceEEEEcceeEEEe-CCEEeeCCCCHHHhhcCCCccHHHHHHH
Confidence 111246799999997 99999999999999999999999999999999887 8999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhchhhHHHHHHHHH
Q 015413 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN 258 (407)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~ 258 (407)
|+|++.+.++....+..+. ..+....++.++++++++++.+++++.+++++..-+.. ..-++..++.+++.|+
T Consensus 141 mkFl~~v~~~~~~~~~~~~----~~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL~~~~~~---~~~p~~~~l~ri~~yl 213 (438)
T PF00996_consen 141 MKFLKFVANYEEDDPSTHK----GLDPEKKTFQELLKKFGLSENLIDFIGHAIALSLDDSY---LTEPAREGLERIKLYL 213 (438)
T ss_dssp HHHHHHHHHGCTTBGGGST----TG-TTTSBHHHHHHHTTS-HHHHHHHHHHTS-SSSSGG---GGSBSHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCCcchhh----ccccccccHHHHHHhcCCCHHHHHHHHHhhhhccCccc---ccccHHHHHHHHHHHH
Confidence 9999999887543221111 11234689999999999999999999998888642211 1125678899999999
Q ss_pred HhhccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCC
Q 015413 259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV 338 (407)
Q Consensus 259 ~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~~~~ 338 (407)
.|+++||++ +++||.||.++|+|+|||++++.||+++||++|++|..+ ++|++++|. ++|++++|++||++|+++.
T Consensus 214 ~SlgryG~s--PfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~-~~g~~~gV~-s~ge~v~~k~vI~dpsy~p 289 (438)
T PF00996_consen 214 SSLGRYGKS--PFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVD-EDGKVIGVK-SEGEVVKAKKVIGDPSYLP 289 (438)
T ss_dssp HHHCCCSSS--SEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEE-TTTEEEEEE-ETTEEEEESEEEEEGGGBG
T ss_pred HHHhccCCC--CEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeee-cCCeEEEEe-cCCEEEEcCEEEECCccCc
Confidence 999999974 699999999999999999999999999999999999997 478888997 5999999999999998873
Q ss_pred CCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCC--CCCcEEEEeCCCCC---CceEEEEeeccC
Q 015413 339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP--DLSNFLVIFPPRCK---IDSWYFCLCYAE 404 (407)
Q Consensus 339 ~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~--~~~~~~~~~p~~~~---~~~~~~~~~~~~ 404 (407)
.+ ....|.++|+|||+++|+.. +.+.++|+||+.+. .|.|..+++++|
T Consensus 290 ~~------------------v~~~~~V~RaI~Il~~pi~~t~~~~s~~IiiP~~~~~~~~dIyv~~~ss~~ 342 (438)
T PF00996_consen 290 EK------------------VKKTGQVSRAICILDHPIPNTEDASSVQIIIPQSQVGRKSDIYVLQLSSST 342 (438)
T ss_dssp CG------------------EEEEEEEEEEEEEESS-STTSTT-SSEEEEE-GGGCTSSS-EEEEEEEGGG
T ss_pred cc------------------ccccceEEEEEEEEcCCCCCCCCCceEEEecCCcccCCCCCeEEEEECCCc
Confidence 11 12257899999999999985 35568899998774 467777776665
No 2
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=100.00 E-value=7.3e-52 Score=407.67 Aligned_cols=338 Identities=28% Similarity=0.511 Sum_probs=276.8
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccccc
Q 015413 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS 98 (407)
Q Consensus 19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (407)
|+++||||||||||+||++|+.|+++|++|+|||+|++|||+++|+++.++..|+.. +.+. .
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~-~~~~-----------------~ 62 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKP-GETP-----------------P 62 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcc-cCCC-----------------c
Confidence 467899999999999999999999999999999999999999999998876444322 1110 0
Q ss_pred ccccCCCCceEEecCCCeEEeeCcHHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChHHHHHH
Q 015413 99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178 (407)
Q Consensus 99 ~~~~~~~~~~~idl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l 178 (407)
+.+ ...+.|++|+. |+++++++.++++|.++++.+|++|+.+++.|++..+|+++++|+++.++|+++.+++.+|+++
T Consensus 63 ~~~-~~~r~~~iDL~-Pk~l~~~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~~vP~s~~~~~~s~ll~l~eKr~l 140 (443)
T PTZ00363 63 ESL-GRNRDWNVDLI-PKFIMASGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRC 140 (443)
T ss_pred hhc-ccccccccccC-CeeeecCChHHHHHhhcCccceeeeEEeceEEEEecCCeEEECCCCHHHHhhCCCcchhhHHHH
Confidence 122 35789999996 9999999999999999999999999999999987338899999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhchhhHHHHHHHHH
Q 015413 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN 258 (407)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~ 258 (407)
|+|++.+.++....+..+. ...+..+|+.+|++++++++.+++++.+++++.. ..+. .+.++..++.+++.|.
T Consensus 141 ~kfl~~v~~~~~~~~~~~~----~~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~-~~~~--~~~pa~~tl~ri~~y~ 213 (443)
T PTZ00363 141 KNFLQYVSNYDENDPETHK----GLNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYT-NDDY--LNKPAIETVMRIKLYM 213 (443)
T ss_pred HHHHHHHHhhccCChhhhc----ccCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhc-cccc--ccCCHHHHHHHHHHHH
Confidence 9999999877543221111 0113468999999999999999999888776642 1110 0124667788899999
Q ss_pred HhhccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCC
Q 015413 259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV 338 (407)
Q Consensus 259 ~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~~~~ 338 (407)
.|+++|+. +++.||+||+++|+++|+|.++++||+|+|+++|++|.++ +++++++|++++|++++|++||++|++.
T Consensus 214 ~S~~~~g~--~p~~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~-~~g~~~~V~~~~Ge~i~a~~VV~~~s~~- 289 (443)
T PTZ00363 214 DSLSRYGK--SPFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFD-ENGKVCGVKSEGGEVAKCKLVICDPSYF- 289 (443)
T ss_pred HHHhhccC--CcceeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEc-CCCeEEEEEECCCcEEECCEEEECcccc-
Confidence 99999985 3488999999999999999999999999999999999987 3577889999999999999999999886
Q ss_pred CCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCC--CCCcEEEEeCCCCC---CceEEEEeeccC
Q 015413 339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP--DLSNFLVIFPPRCK---IDSWYFCLCYAE 404 (407)
Q Consensus 339 ~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~--~~~~~~~~~p~~~~---~~~~~~~~~~~~ 404 (407)
+.. ..+.|.|+|+|||+++|+.. +.+.++|+||+.+. ++.|..++|++|
T Consensus 290 p~~-----------------~~~~~~v~R~i~i~~~pi~~~~~~~~~~i~~P~~~~~~~~~i~v~~~s~~~ 343 (443)
T PTZ00363 290 PDK-----------------VKKVGKVIRCICILNHPIPNTNNANSCQIIIPQKQLGRKNDIYIMLVSSNH 343 (443)
T ss_pred ccc-----------------cccccEEEEEEEEEcccccccCcCccEEEEECCcccCCCCCEEEEEecCCC
Confidence 321 12478999999999999963 35678999999874 477777777665
No 3
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-47 Score=352.83 Aligned_cols=336 Identities=32% Similarity=0.533 Sum_probs=280.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR 99 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (407)
+++|||||+|+|+..++.+.+|+.+|++|+|+|+|++|||-.+|+++.++..|+....... .+
T Consensus 2 deeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~-----------------~~ 64 (440)
T KOG1439|consen 2 DEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKP-----------------PE 64 (440)
T ss_pred CCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccC-----------------cc
Confidence 4569999999999999999999999999999999999999999999888777776331100 01
Q ss_pred cccCCCCceEEecCCCeEEeeCcHHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChHHHHHHH
Q 015413 100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM 179 (407)
Q Consensus 100 ~~~~~~~~~~idl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~ 179 (407)
. ....++|++|+. |+++++.+.++.+|.+.++.+|++|+.+.+.|++. +|+++++|.++.+++.++.+++.+|+++|
T Consensus 65 ~-~~~~rd~nvDLi-PK~lmAn~~Lvk~Li~T~V~~YL~fk~i~gsfv~~-~~k~~KVP~t~~Ea~~s~lmgl~eKrr~~ 141 (440)
T KOG1439|consen 65 K-LGRDRDWNVDLI-PKFLMANGELVKILIHTGVTRYLEFKSISGSFVYK-KGKIYKVPATEAEALTSPLMGLFEKRRVM 141 (440)
T ss_pred c-cccccccchhhc-hHhhhccchHHHHHHHhchhhheEEEeecceEEEE-CCeEEECCCCHHHHhcCCccchhHHHHHH
Confidence 1 135789999998 99999999999999999999999999999999987 77999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCcccccccccccccc-CCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhchhhHHHHHHHHH
Q 015413 180 RFFKLVQGHLSLDESEENNVRISEEDL-DSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN 258 (407)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~ 258 (407)
||+..+.++.+..+..+. ..+. ..++.+++.++++.+..+++..+++++...+ ... +.++..++.++..|.
T Consensus 142 kFl~~V~n~~e~~~~~~~-----~~~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~dd--~~l-d~p~~~~~~ri~~Y~ 213 (440)
T KOG1439|consen 142 KFLKFVLNYDEEDPKTWQ-----GYDLSKDTMREFLGKFGLLEGTIDFIGHAIALLCDD--SYL-DQPAKETLERILLYV 213 (440)
T ss_pred HHHHHHhhhhhhcccccc-----ccccccchHHHHHHHhcccccceeeeeeeeEEEecc--hhc-cCccHHHHHHHHHHH
Confidence 999999987654332111 1122 2489999999999999999887766654322 111 246778899999999
Q ss_pred HhhccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCC
Q 015413 259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV 338 (407)
Q Consensus 259 ~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~~~~ 338 (407)
+|+++|+.++ ++||+||.++|+|+|||.++..||+++||.++.+|..+ ++|++.+|. +.++..+++.||++|++..
T Consensus 214 ~S~~~yg~~~--ylyP~yGlgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~-~~gk~igvk-~~~~v~~~k~vi~dpSY~~ 289 (440)
T KOG1439|consen 214 RSFARYGKSP--YLYPLYGLGELPQGFARLSAVYGGTYMLNKPIDEINET-KNGKVIGVK-SGGEVAKCKKVICDPSYFP 289 (440)
T ss_pred HHHhhcCCCc--ceecccCcchhhHHHHHHhhccCceeecCCceeeeecc-CCccEEEEe-cCCceeecceEEecCccch
Confidence 9999999654 89999999999999999999999999999999999885 368888887 5667789999999999973
Q ss_pred CCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCC--CCCCcEEEEeCCCCC---CceEEEEeeccCC
Q 015413 339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--PDLSNFLVIFPPRCK---IDSWYFCLCYAED 405 (407)
Q Consensus 339 ~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~--~~~~~~~~~~p~~~~---~~~~~~~~~~~~~ 405 (407)
.+ ....|.++|++||.++|.. .+..+++++||+.+. .|.+.+|++.+|.
T Consensus 290 ~~------------------~k~vg~viR~iCIl~hpi~~t~~~~S~qiiipq~q~~rksdi~v~~~ss~~~ 343 (440)
T KOG1439|consen 290 QK------------------VKKVGQVIRAICILSHPIPNTNDAESAQIIIPQFQVGRKSDIYVFGLSSAHN 343 (440)
T ss_pred HH------------------HHhhhheeeeeEEecCCcCcCCccceeeEEechhhhCCcccEEEEEeccCCC
Confidence 22 1235789999999999864 667889999999884 5999999999885
No 4
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-47 Score=352.75 Aligned_cols=355 Identities=36% Similarity=0.588 Sum_probs=277.6
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchh--------hhhhhhc---cCC----------
Q 015413 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIA--------DLTHFLN---SHS---------- 77 (407)
Q Consensus 19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~--------~~~~~~~---~~~---------- 77 (407)
.++.|||||||+|+.+.+.|++.+|.|.+|++||+|.+|||.|.+|++. .+..+.+ +..
T Consensus 5 lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms~ihe~~e~~l~~~d~ls~eVe~~~al~~n~~ 84 (547)
T KOG4405|consen 5 LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMSMIHEVEEAALTKKDHLSNEVEPPSALQKNNA 84 (547)
T ss_pred CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeechhhhhhHHHHhhhhccccccCCCccccccCC
Confidence 3578999999999999999999999999999999999999999999987 3322321 111
Q ss_pred CCCCCCCCCccccccccc-c--------------ccccccCCCCceEEecCCCeEEeeCcHHHHHHHhcCcccccccccc
Q 015413 78 TPSSVCPDPLYSDVEISN-Y--------------ASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142 (407)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~-~--------------~~~~~~~~~~~~~idl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~ 142 (407)
++.+++.+.+|.+++..+ . ....+.+..|+|++||. |+++++.+.++++|+.+++.+|.||+.+
T Consensus 85 ~~t~~sn~e~~~~vEken~~~~s~~d~~E~~p~~nr~~i~~~~RRFniDLv-pkilys~g~lI~lLikS~vsrYaEFK~V 163 (547)
T KOG4405|consen 85 PPTPPSNNEIFLEVEKENCIPSSLKDSVEDSPSKNRSQIEKESRRFNIDLV-PKILYSAGELIQLLIKSNVSRYAEFKNV 163 (547)
T ss_pred CCCCCCCchhhhheeeeccccccccchhhhcccccHHHHHHhccccchhhh-hHHHhcccHHHHHHHHhcchhhhhhhcc
Confidence 122233345555555441 0 11122346899999998 9999999999999999999999999999
Q ss_pred cceeeEccCCceeecCCCHHHHhhhccCChHHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChh
Q 015413 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHK 222 (407)
Q Consensus 143 ~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~ 222 (407)
+..+.+. +|++..+|++++++|.++.|+..+|+.||+|+.++.++..+ ...+...+..+.||.+||++++++++
T Consensus 164 ~r~l~~~-eg~l~~VPcSRadvFnsk~LTivEKr~LMKFltfc~~y~tE-----k~~~~~~~~~e~~F~EyL~~~rltp~ 237 (547)
T KOG4405|consen 164 DRILAFR-EGELEQVPCSRADVFNSKSLTIVEKRMLMKFLTFCQEYLTE-----KDPDEYVEFRERPFSEYLKTMRLTPK 237 (547)
T ss_pred chhhccc-CCeeeecCchHHhhhcccchhHHHHHHHHHHHHHHHHhhhc-----cCcHHHHHhhcCcHHHHHHhcCCChh
Confidence 9988776 78999999999999999999999999999999999988522 11122334567899999999999999
Q ss_pred hHHHHHHHHHhccCCcchhhhhhchhhHHHHHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCce
Q 015413 223 IKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPV 302 (407)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V 302 (407)
++.+++++|+|..+.+ .++..++.+.+.|+.++|+||+++ |++|.||-|+|+|+|||+|++.||.|+|+++|
T Consensus 238 lqs~vl~aIaM~~~~~------~tt~eGm~at~~fl~slGrfgntp--fLfPlYGqGELpQcFCRlcAVfGgIYcLr~~V 309 (547)
T KOG4405|consen 238 LQSIVLHAIAMLSESQ------LTTIEGMDATKNFLTSLGRFGNTP--FLFPLYGQGELPQCFCRLCAVFGGIYCLRRPV 309 (547)
T ss_pred hHHHHHHHHHhcCccc------ccHHHHHHHHHHHHHHhhccCCCc--ceeeccCCCcchHHHHHHHHHhcceEEeccch
Confidence 9999999999975432 578889999999999999999754 99999999999999999999999999999999
Q ss_pred eEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCCCC-C
Q 015413 303 ISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL-S 381 (407)
Q Consensus 303 ~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~~~-~ 381 (407)
+.|..+.+..++..+..+.|+++.|+.+|+.|.++ +.-. + .+..+..++|+++|++.++...+ .
T Consensus 310 q~ivldk~s~~~~~~l~s~g~ri~~k~~v~s~~y~-pe~~----~----------~~~~~K~Israv~itd~sil~~e~~ 374 (547)
T KOG4405|consen 310 QAIVLDKESLDCKAILDSFGQRINAKNFVVSPSYA-PEVV----C----------SRVQLKQISRAVLITDPSILKTELD 374 (547)
T ss_pred hheeecccccchhhhHhhhcchhcceeeeecCccc-cccc----c----------cccchhhcceeEEecCccccchhHH
Confidence 99999844443322333679999999999999987 4321 1 12224579999999999976322 2
Q ss_pred c--EEEEeCCCCC--------CceEEEEeecc
Q 015413 382 N--FLVIFPPRCK--------IDSWYFCLCYA 403 (407)
Q Consensus 382 ~--~~~~~p~~~~--------~~~~~~~~~~~ 403 (407)
. .++..|+... +..+.+|.||-
T Consensus 375 q~~~ll~~~~~epg~~avr~iel~~~t~tc~k 406 (547)
T KOG4405|consen 375 QQLSLLSLLAVEPGAMAVRLIELCSSTMTCPK 406 (547)
T ss_pred hhhhhhhccccCcchhhHHHHHhhcccccCcc
Confidence 2 3445555443 34555666653
No 5
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-43 Score=320.97 Aligned_cols=330 Identities=30% Similarity=0.508 Sum_probs=270.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccccccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL 100 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (407)
+.|||||+|+|+..++.+++|+.+|++|+|+|+|++||+-.+|++...+..|++....-. .
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p-------------------~ 65 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRP-------------------S 65 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccc-------------------c
Confidence 469999999999999999999999999999999999999999999988888876652210 0
Q ss_pred ccCCCCceEEecCCCeEEeeCcHHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChHHHHHHHH
Q 015413 101 LSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMR 180 (407)
Q Consensus 101 ~~~~~~~~~idl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~~ 180 (407)
-....++|++|+. |+++++.++++.+|.+.|+.+|++|+++.+.|++. +|+++++|.++.++|.++.+++.+|+++||
T Consensus 66 k~~~drd~~iDL~-PK~l~A~s~l~~iLi~t~v~~YLefk~i~~~~~~~-~~k~~kVP~ne~ei~~s~~lsL~eKr~vmr 143 (434)
T COG5044 66 KGGGDRDLNIDLI-PKFLFANSELLKILIETGVTEYLEFKQISGSFLYR-PGKIYKVPYNEAEIFTSPLLSLFEKRRVMR 143 (434)
T ss_pred ccccccccchhhc-hhhhcccchHHHHHHHhChHhheeeeeccccEEec-CCcEEECCccHHhhhcCCCcchhhHHHHHH
Confidence 1124688999998 99999999999999999999999999999999887 679999999999999999999999999999
Q ss_pred HHHHHHhhcCCCccccccccccccccCCcHHHHHH-hcCCChhhHHHHHHHHHhccCCcchhhhhhchhhHHHHHHHHHH
Q 015413 181 FFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLT-KMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNS 259 (407)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~ 259 (407)
|++++.++.+... .....+.+.++.+++. +++++.....++.++++++ ++.+ ++++.++.++..|++
T Consensus 144 Fl~~V~n~~~~~~------~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~-ldl~-----~p~re~~erIl~Y~~ 211 (434)
T COG5044 144 FLKWVSNYAEQKS------TLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALS-LDLD-----IPAREALERILRYMR 211 (434)
T ss_pred HHHHHHhHHhhhh------hchhhhhcccHHHHHHHHHccCcchhhhhhhhhhhh-cccc-----CCchHHHHHHHHHHH
Confidence 9999888764211 1112345567777775 7999999999998888775 3332 578899999999999
Q ss_pred hhccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCCC
Q 015413 260 SIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVP 339 (407)
Q Consensus 260 s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~~~~~ 339 (407)
|++.||.+ +++||++|.++|+|.|||.++..||+++||+++.+|... ..+.+|. .++.+..|.+||.+|++.-.
T Consensus 212 Sf~~yg~~--pyLyp~YGl~El~QGFaRssav~GgtymLn~~i~ein~t---k~v~~v~-~~~~~~ka~KiI~~~~~~~~ 285 (434)
T COG5044 212 SFGDYGKS--PYLYPRYGLGELSQGFARSSAVYGGTYMLNQAIDEINET---KDVETVD-KGSLTQKAGKIISSPTYFRE 285 (434)
T ss_pred hhcccCCC--cceeeccCchhhhHHHHHhhhccCceeecCcchhhhccc---cceeeee-cCcceeecCcccCCcccccc
Confidence 99999964 599999999999999999999999999999999999643 3334665 56778999999999988622
Q ss_pred CCCccchhhhhhhhhhhcccCCCceEEEEEEEeC-CC--CCCCCCcEEEEeCCCCC---CceEEEEeeccC
Q 015413 340 GSLASSHQQLQESFQAFSLSDNKGKVARGICITR-SS--LKPDLSNFLVIFPPRCK---IDSWYFCLCYAE 404 (407)
Q Consensus 340 ~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~-~p--~~~~~~~~~~~~p~~~~---~~~~~~~~~~~~ 404 (407)
+ + ...+ | ...++|++||.. .| +....+.++++|||.+. +|.+.++++-.|
T Consensus 286 ~-~-~~~~----------q---~yriiRa~Ci~~~h~~~~~~~~ds~~iif~~~~lk~~~~i~v~~lgs~~ 341 (434)
T COG5044 286 D-S-KSVG----------Q---FYRIIRAICILLVHPVPFTTGLDSLQIIFPPFSLKRKNDIQVAGLGSGS 341 (434)
T ss_pred c-c-cccc----------h---hhhhhHhhhhhhcCccccccccccceeeechhhhcccCceEEEEecCCC
Confidence 2 1 0111 1 136899999988 54 55778999999999994 578887776554
No 6
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.96 E-value=3.9e-27 Score=237.20 Aligned_cols=288 Identities=15% Similarity=0.159 Sum_probs=193.1
Q ss_pred cccEEEECCChhHHHHHHHHhhC----CCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccc
Q 015413 22 AFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYA 97 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~----G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (407)
+.||+|||||++||+||+.|+++ |++|+|||+++++||+++|.+.+
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~------------------------------ 51 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKED------------------------------ 51 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeC------------------------------
Confidence 36999999999999999999999 99999999999999999997543
Q ss_pred cccccCCCCceEEecCCCeEEeeCc-HHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChHHHH
Q 015413 98 SRLLSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKN 176 (407)
Q Consensus 98 ~~~~~~~~~~~~idl~Gp~~~~~~~-~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~ 176 (407)
.|.+|+ |+++++... .+.+++.++|+.+++.+......+++..+|+.+++|.+..+.+....+++.++.
T Consensus 52 ---------g~~~e~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~ 121 (462)
T TIGR00562 52 ---------GYLIER-GPDSFLERKKSAPDLVKDLGLEHVLVSDATGQRYVLVNRGKLMPVPTKIAPFVKTGLFSLGGKL 121 (462)
T ss_pred ---------CEEEec-CccccccCChHHHHHHHHcCCCcccccCCCCceEEEECCCceecCCCChHHHhcCCCCCchhhH
Confidence 245777 688886655 588999999988776543333345444238888888776666655555555544
Q ss_pred HHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhchhhHHHHHHH
Q 015413 177 QLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLAL 256 (407)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~ 256 (407)
++. +...... ....++|+.+|+++. +.+.+.+.+...+...-+..++ +++|+..++..+..
T Consensus 122 ~~~--~~~~~~~--------------~~~~d~s~~e~l~~~-~g~~~~~~~~~p~~~~~~~~~~--~~ls~~~~~~~~~~ 182 (462)
T TIGR00562 122 RAG--MDFIRPA--------------SPGKDESVEEFVRRR-FGDEVVENLIEPLLSGIYAGDP--SKLSLKSTFPKFYQ 182 (462)
T ss_pred Hhh--hhhccCC--------------CCCCCcCHHHHHHHh-cCHHHHHHHHHHHhcccccCCH--HHhhHHHHhHHHHH
Confidence 332 1111000 012358999999865 3444444333222222234443 34676655543322
Q ss_pred HHH-------hh------------ccccCCCcc-eEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEE
Q 015413 257 YNS-------SI------------GRFQNALGA-LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKG 316 (407)
Q Consensus 257 ~~~-------s~------------~~~~~~~~~-~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~g 316 (407)
... .+ ..+....+. +.+++||+++|+++|++.+. .++|++|++|++|..+ +++ +.
T Consensus 183 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~--~~~-~~ 257 (462)
T TIGR00562 183 TEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLATGLETLPEEIEKRLK--LTKVYKGTKVTKLSHR--GSN-YT 257 (462)
T ss_pred HHHhcCcHHHHHHhhcccCccccccccccccCCceEecchhHHHHHHHHHHHhc--cCeEEcCCeEEEEEec--CCc-EE
Confidence 111 00 001111122 67799999999999987553 2789999999999876 444 46
Q ss_pred EEeCCCcEEEcCEEEE-CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCC
Q 015413 317 VRLASGQDILSHKLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK 377 (407)
Q Consensus 317 V~~~~G~~i~Ad~VI~-~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~ 377 (407)
|++++|+++.||+||+ .|...+..+ -|++|+...+..++..++.+.++++.|++|++
T Consensus 258 v~~~~g~~~~ad~VI~t~P~~~~~~l----l~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~ 315 (462)
T TIGR00562 258 LELDNGVTVETDSVVVTAPHKAAAGL----LSELSNSASSHLDKIHSPPVANVNLGFPEGSV 315 (462)
T ss_pred EEECCCcEEEcCEEEECCCHHHHHHH----hcccCHHHHHHHhcCCCCceEEEEEEEchHHc
Confidence 7777888899999995 466555554 35666666666677889999999999998865
No 7
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.96 E-value=2.6e-27 Score=240.80 Aligned_cols=290 Identities=15% Similarity=0.153 Sum_probs=190.4
Q ss_pred EEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccccccCC
Q 015413 25 LIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQH 104 (407)
Q Consensus 25 VvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (407)
|||||||++||+||++|+++|++|+||||++++||+++|++.+
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~------------------------------------- 43 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDD------------------------------------- 43 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecC-------------------------------------
Confidence 6999999999999999999999999999999999999998654
Q ss_pred CCceEEecCCCeEEeeCcHHHHHHHhcCc--cccccccccccee-eEccCCceeecCCCHHHHhhh-ccCChHHHHHHHH
Q 015413 105 PRNFNLDVSGPRVLFCADHAVDLMLKSGA--SHYLEFKSIDATF-MLDADAKLCSVPDSRAAIFKD-KSLGLMEKNQLMR 180 (407)
Q Consensus 105 ~~~~~idl~Gp~~~~~~~~~~~~l~~~g~--~~~~~f~~~~~~~-~~~~~g~~~~~p~~~~~~~~~-~~l~~~~k~~l~~ 180 (407)
.|.+|. |++++..++.+.+++.+.|. .+++++...+..+ ++..+|+.+.++.+....... ..+++.+...+.+
T Consensus 44 --G~~fD~-G~~~~~~~~~~~~l~~~lg~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~ 120 (502)
T TIGR02734 44 --GFRFDT-GPTVITMPEALEELFALAGRDLADYVELVPLDPFYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRR 120 (502)
T ss_pred --CeEEec-CCeEEccccHHHHHHHHcCCChhheEEEEECCCceEEECCCCCEEEecCCHHHHHHHHHHhCcccHHHHHH
Confidence 356788 58888766667777787774 5677887776655 333467778888765432211 2234556666666
Q ss_pred HHHHHHhhcC-------CCcccc--cc-----ccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhc
Q 015413 181 FFKLVQGHLS-------LDESEE--NN-----VRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLK 246 (407)
Q Consensus 181 ~~~~~~~~~~-------~~~~~~--~~-----~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 246 (407)
|++.++.... ..+... .. ..........|+.+|++++..++.++.++...... +..++ .+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~--~g~~p--~~~~ 196 (502)
T TIGR02734 121 FLDYAERVYREGYRKLGYVPFLSPRDLLRADLPQLLALLAWRSLYSKVARFFSDERLRQAFSFHALF--LGGNP--FRTP 196 (502)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhHhhhhccCcCCHHHHHHhhcCCHHHHHHhccccee--eccCc--ccch
Confidence 6655443221 001000 00 01112335689999999888888888876532111 12222 1122
Q ss_pred hhhHHHHHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEE
Q 015413 247 TRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDIL 326 (407)
Q Consensus 247 ~~~~l~~~~~~~~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~ 326 (407)
+. ..+..+.. +. +..++|.||++.++++|.+.+++.|++|+++++|++|..+ ++++++|++.+|++++
T Consensus 197 ~~---~~l~~~~~----~~---~g~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~--~~~~~~V~~~~g~~~~ 264 (502)
T TIGR02734 197 SI---YALISALE----RE---WGVWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETE--GGRATAVHLADGERLD 264 (502)
T ss_pred HH---HHHHHHHH----hh---ceEEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEee--CCEEEEEEECCCCEEE
Confidence 21 11211211 11 1267899999999999999999999999999999999986 6777899988999999
Q ss_pred cCEEEEC--CCCCCCCCCccchhhh-hhhh-hhhcccCCCceEEEEEEEeC
Q 015413 327 SHKLVLD--PSFTVPGSLASSHQQL-QESF-QAFSLSDNKGKVARGICITR 373 (407)
Q Consensus 327 Ad~VI~~--p~~~~~~~~~~~~p~l-p~~~-~~~~~~~~~g~~~k~i~i~~ 373 (407)
||+||++ +..++..+. .+++ |... +.+.+.....+...+.+.++
T Consensus 265 ad~VI~a~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~s~s~~~~~lgl~ 312 (502)
T TIGR02734 265 ADAVVSNADLHHTYRRLL---PNHPRRRYPAARLSRKRPSPSLFVLYFGLL 312 (502)
T ss_pred CCEEEECCcHHHHHHHhc---CccccccccccccccCCcCCeeeEEEEeec
Confidence 9999953 334433332 1222 2222 22323333456677777877
No 8
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.95 E-value=1.2e-26 Score=233.58 Aligned_cols=285 Identities=14% Similarity=0.195 Sum_probs=184.0
Q ss_pred ccEEEECCChhHHHHHHHHhhC------CCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccc
Q 015413 23 FDLIVIGTGLPESVISAAASAS------GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNY 96 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~------G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (407)
.+|||||||++||+||+.|+++ |++|+|||+++|+||+++|.+.+|
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g---------------------------- 53 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKD---------------------------- 53 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCC----------------------------
Confidence 3699999999999999999986 379999999999999999976432
Q ss_pred ccccccCCCCceEEecCCCeEEeeC-cHHHHHHHhcCcccccccccccceeeEccCCceeecCCC--------HHHHhhh
Q 015413 97 ASRLLSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDS--------RAAIFKD 167 (407)
Q Consensus 97 ~~~~~~~~~~~~~idl~Gp~~~~~~-~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~--------~~~~~~~ 167 (407)
|.+|+ |+++++.. ..+.+++.++|+.+++.+......|++. +|...++|.+ ..+.++.
T Consensus 54 -----------~~~e~-G~~~i~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~p~~~~~~~~~ 120 (463)
T PRK12416 54 -----------FIMES-GADSIVARNEHVMPLVKDLNLEEEMVYNETGISYIYS-DNTLHPIPSDTIFGIPMSVESLFSS 120 (463)
T ss_pred -----------EEEec-CcHHHhcCCHHHHHHHHHcCCccceecCCCCceEEEE-CCeEEECCCCCeecCCCChHHhhcC
Confidence 44677 58877544 4678999999998776655544455554 5666665542 2233333
Q ss_pred ccCChHHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhch
Q 015413 168 KSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKT 247 (407)
Q Consensus 168 ~~l~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 247 (407)
..+++..|... +...... . ...+.++|+.+|+++. +.+++.+.+...+...-+..++ +++|+
T Consensus 121 ~~~~~~~~~~~------~~~~~~~-~--------~~~~~~~sv~~~l~~~-~~~~~~~~~~~p~~~~~~~~~~--~~ls~ 182 (463)
T PRK12416 121 TLVSTKGKIVA------LKDFITK-N--------KEFTKDTSLALFLESF-LGKELVERQIAPVLSGVYSGKL--NELTM 182 (463)
T ss_pred CcCCHHHHHHh------hhhhccC-C--------CCCCCCCCHHHHHHHh-cCHHHHHHHHHHHhcccccCCc--ccccH
Confidence 33333222211 1111100 0 0113578999999975 4444443332222222234443 34666
Q ss_pred hhHHHHHHHHHHhhccc-----------c-CCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEE
Q 015413 248 RDGINRLALYNSSIGRF-----------Q-NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYK 315 (407)
Q Consensus 248 ~~~l~~~~~~~~s~~~~-----------~-~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~ 315 (407)
...+..+..+....+.. . .....+.+++||+++|+++|++.+.. ++|++|++|++|..+ +++ +
T Consensus 183 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~--~~~-~ 257 (463)
T PRK12416 183 ASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLSTIIDRLEEVLTE--TVVKKGAVTTAVSKQ--GDR-Y 257 (463)
T ss_pred HHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCHHHHHHHHHHhccc--ccEEcCCEEEEEEEc--CCE-E
Confidence 54445444443222110 0 11123778999999999999876543 689999999999986 444 4
Q ss_pred EEEeCCCcEEEcCEEEE-CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCC
Q 015413 316 GVRLASGQDILSHKLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK 377 (407)
Q Consensus 316 gV~~~~G~~i~Ad~VI~-~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~ 377 (407)
.|++.+|+++.||+||+ .|...+.++. ++|+++....++ .+..+.++.+.|+++++
T Consensus 258 ~v~~~~g~~~~ad~VI~a~p~~~~~~ll--~~~~l~~~~~~~----~~~~~~~v~l~~~~~~~ 314 (463)
T PRK12416 258 EISFANHESIQADYVVLAAPHDIAETLL--QSNELNEQFHTF----KNSSLISIYLGFDILDE 314 (463)
T ss_pred EEEECCCCEEEeCEEEECCCHHHHHhhc--CCcchhHHHhcC----CCCceEEEEEEechhhc
Confidence 77777888899999995 4666666654 467777665444 35689999999998754
No 9
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.95 E-value=5.4e-27 Score=236.23 Aligned_cols=257 Identities=20% Similarity=0.227 Sum_probs=164.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR 99 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (407)
|..+||||||||++||+||++|||+|++|+||||++++||+++|++++
T Consensus 1 ~~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~-------------------------------- 48 (487)
T COG1233 1 MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELD-------------------------------- 48 (487)
T ss_pred CCCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEecc--------------------------------
Confidence 456999999999999999999999999999999999999999998764
Q ss_pred cccCCCCceEEecCCCeEEeeCcHHHHHHHhcC-cccc-ccccccccee-eEccCCceeecCCCHHHHhh-hccCChHHH
Q 015413 100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSG-ASHY-LEFKSIDATF-MLDADAKLCSVPDSRAAIFK-DKSLGLMEK 175 (407)
Q Consensus 100 ~~~~~~~~~~idl~Gp~~~~~~~~~~~~l~~~g-~~~~-~~f~~~~~~~-~~~~~g~~~~~p~~~~~~~~-~~~l~~~~k 175 (407)
.|.+|+ ||+++...... .++.+++ ...+ +++...+..+ .+..+|....+..+...... ....++.+.
T Consensus 49 -------Gf~fd~-G~~~~~~~~~~-~~~~~l~~l~~~~l~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~ 119 (487)
T COG1233 49 -------GFRFDT-GPSWYLMPDPG-PLFRELGNLDADGLDLLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDG 119 (487)
T ss_pred -------ceEecc-CcceeecCchH-HHHHHhccCcccceeeeccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccH
Confidence 356777 58777655544 5555555 4443 6666666655 33345777777766543322 123344555
Q ss_pred HHHHHHHHHHHhhcC----CC--ccccc---ccccc------ccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcch
Q 015413 176 NQLMRFFKLVQGHLS----LD--ESEEN---NVRIS------EEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEV 240 (407)
Q Consensus 176 ~~l~~~~~~~~~~~~----~~--~~~~~---~~~~~------~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (407)
..+.+++..+.+... .. +.... ..... ......+..+++.....++.++..+.+..... . ..+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~-~-~~p 197 (487)
T COG1233 120 EALARYLRLLARLYELLAALLLAPPRSELLLVPDTPERLLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVYG-G-APP 197 (487)
T ss_pred HHHHHHHHHHHHhhHHHHhhcCCCchhhhhhccccHHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHhc-C-CCC
Confidence 555555443322110 00 00000 00000 01123566667765555566776665532222 1 222
Q ss_pred hhhhhchhhHHHHHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeC
Q 015413 241 SEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320 (407)
Q Consensus 241 ~~~~~s~~~~l~~~~~~~~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~ 320 (407)
.. .+ ++..+..+. ....| +.||+||++.|+++|++.+++.||+|+++++|++|.++ +|+.++|++.
T Consensus 198 ~~--~~---a~~~~~~~~--~~~~G-----~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~--~g~g~~~~~~ 263 (487)
T COG1233 198 ST--PP---ALYLLLSHL--GLSGG-----VFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILVE--GGKGVGVRTS 263 (487)
T ss_pred Cc--hh---HHHHHHHHh--cccCC-----eeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEEe--CCcceEEecc
Confidence 11 11 122222111 11122 77999999999999999999999999999999999997 7766788877
Q ss_pred CCcEEEcCEEEEC
Q 015413 321 SGQDILSHKLVLD 333 (407)
Q Consensus 321 ~G~~i~Ad~VI~~ 333 (407)
+|+.+.||.||++
T Consensus 264 ~g~~~~ad~vv~~ 276 (487)
T COG1233 264 DGENIEADAVVSN 276 (487)
T ss_pred ccceeccceeEec
Confidence 7778999999954
No 10
>PLN02576 protoporphyrinogen oxidase
Probab=99.95 E-value=2.6e-26 Score=233.21 Aligned_cols=293 Identities=17% Similarity=0.163 Sum_probs=191.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhC-CCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccccc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS 98 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~-G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (407)
..++||||||||++||+||++|+++ |++|+|||+++++||+++|.+.+|
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~g------------------------------ 59 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDG------------------------------ 59 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccCC------------------------------
Confidence 4467999999999999999999999 999999999999999999976433
Q ss_pred ccccCCCCceEEecCCCeEEeeCcHHHHHHHhcCcccccccccc-cceeeEccCCceeecCCCHHHHhhhccCChHHHHH
Q 015413 99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI-DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ 177 (407)
Q Consensus 99 ~~~~~~~~~~~idl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~-~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~ 177 (407)
|.+|. ||+++...+..+..+.+.|+.+++.|... ...|++. +|+.+++|.+..+.+....+++.+|.+
T Consensus 60 ---------~~~d~-G~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~ 128 (496)
T PLN02576 60 ---------FIWEE-GPNSFQPSDPELTSAVDSGLRDDLVFPDPQAPRYVVW-NGKLRPLPSNPIDLPTFDLLSAPGKIR 128 (496)
T ss_pred ---------eEEec-CCchhccCcHHHHHHHHcCChhheecCCCCceEEEEE-CCEEEEcCCChHHhcCcCcCChhHHHH
Confidence 44677 58887766655555555588777666432 2345554 788999998766666556666655554
Q ss_pred HHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhchhhHHHHHHHH
Q 015413 178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALY 257 (407)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~ 257 (407)
+... .. .+... .....++|+.+|+++. +++.+.+.+...+...-+..++ +++|+..++..+..+
T Consensus 129 ~~~~--~~-~~~~~----------~~~~~~~sv~~~l~~~-~g~~~~~~~~~p~~~~~~~~~~--~~lS~~~~~~~~~~~ 192 (496)
T PLN02576 129 AGLG--AF-GWKRP----------PPPGREESVGEFVRRH-LGDEVFERLIDPFVSGVYAGDP--SSLSMKAAFPKLWNL 192 (496)
T ss_pred HhHH--Hh-hccCC----------CCCCCCCcHHHHHHHh-cCHHHHHHHHHHHhCceecCCH--HHHhHHHHhHHHHHH
Confidence 3221 11 11000 0113578999999975 5666655444332222344454 457776655543322
Q ss_pred HHhhcc--------c----------------c-CCCcceEeecCCcchHHHHHHHHHHhcC-cEEEeCCceeEEEEecCC
Q 015413 258 NSSIGR--------F----------------Q-NALGALIYPIYGQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNS 311 (407)
Q Consensus 258 ~~s~~~--------~----------------~-~~~~~~~~p~gG~~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~ 311 (407)
....+. . . .......+++||+++|+++|++. .+ ++|++|++|++|+.+ +
T Consensus 193 e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~L~~~la~~---l~~~~i~l~~~V~~I~~~--~ 267 (496)
T PLN02576 193 EKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFRGGLQTLPDALAKR---LGKDKVKLNWKVLSLSKN--D 267 (496)
T ss_pred HHhcCcHHHHHHHhhhhhcccccccccccccccccCCeeEeccchHHHHHHHHHHh---hCcCcEEcCCEEEEEEEC--C
Confidence 110000 0 0 01123567899999999998753 45 789999999999986 3
Q ss_pred CcEEEEEe--CCCc-EEEcCEEEE-CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCC
Q 015413 312 GSYKGVRL--ASGQ-DILSHKLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP 378 (407)
Q Consensus 312 g~~~gV~~--~~G~-~i~Ad~VI~-~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~ 378 (407)
+..+.|++ .+|+ ++.||+||+ .|...+..+. +++++......+...+..++++++.|+++++.
T Consensus 268 ~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll----~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~ 334 (496)
T PLN02576 268 DGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEML----RPKSPAAADALPEFYYPPVAAVTTSYPKEAVK 334 (496)
T ss_pred CCcEEEEEecCCCceeEEeCEEEECCCHHHHHHHh----cccCHHHHHHhccCCCCceEEEEEEEchHHcc
Confidence 33123433 3453 699999995 5766666654 22334444444667789999999999998764
No 11
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.95 E-value=1.2e-25 Score=228.05 Aligned_cols=297 Identities=12% Similarity=0.059 Sum_probs=174.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccccccccc
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS 102 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (407)
.||||||||++||+||++|+++|++|+|||+++++||+++|++.+
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~----------------------------------- 46 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRR----------------------------------- 46 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccC-----------------------------------
Confidence 589999999999999999999999999999999999999998754
Q ss_pred CCCCceEEecCCCeEEee---CcHHHHHHHhcCccccccccccccee-eEccCC-ceeecCCCHHHHhhh-ccCChHHHH
Q 015413 103 QHPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATF-MLDADA-KLCSVPDSRAAIFKD-KSLGLMEKN 176 (407)
Q Consensus 103 ~~~~~~~idl~Gp~~~~~---~~~~~~~l~~~g~~~~~~f~~~~~~~-~~~~~g-~~~~~p~~~~~~~~~-~~l~~~~k~ 176 (407)
.|.+|. |++++.. .+.+-+++.++|+... ++...++.+ ++..+| ..+.++.+....... ....+.+.+
T Consensus 47 ----G~~fD~-G~~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~d~~~~~~~~dg~~~~~~~~d~~~~~~~l~~~~p~~~~ 120 (492)
T TIGR02733 47 ----GFTFDV-GATQVAGLEPGGIHARIFRELGIPLP-EAKILDPACAVDLPDGSEPIPLWHDPDRWQKERERQFPGSER 120 (492)
T ss_pred ----CEEEee-cceEEEecCcCCHHHHHHHHcCCCCc-ccccCCCCcEEEECCCceEeeeecCHHHHHHHHHHHCCChHH
Confidence 356777 5888754 3345566777886522 123333322 223356 445566654332210 111233321
Q ss_pred HHHH---HHHHHHhhcCCCc----c-ccc----------cccccccccCCcHHHHHHhc--CCChhhHHHHHHHHHhccC
Q 015413 177 QLMR---FFKLVQGHLSLDE----S-EEN----------NVRISEEDLDSPFAEFLTKM--KLPHKIKSIVLYAIAMADY 236 (407)
Q Consensus 177 ~l~~---~~~~~~~~~~~~~----~-~~~----------~~~~~~~~~~~s~~~~l~~~--~~~~~~~~~~~~~~~~~~~ 236 (407)
-+.. ............+ . ... .......+...|+.+|++++ ..++.++.++........
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~- 199 (492)
T TIGR02733 121 FWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVSALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYS- 199 (492)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhc-
Confidence 1111 1111000000000 0 000 00000113358999999986 456778887653222111
Q ss_pred CcchhhhhhchhhHHHHHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEE
Q 015413 237 DQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKG 316 (407)
Q Consensus 237 ~~~~~~~~~s~~~~l~~~~~~~~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~g 316 (407)
...+ .+.++..++. +..+ ..... | .++++||+++|+++|++.+++.|++|+++++|++|.++ ++++++
T Consensus 200 ~~~~--~~~~~~~~~~-~~~~----~~~~~--G-~~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~--~~~~~g 267 (492)
T TIGR02733 200 QEDA--DETAALYGAT-VLQM----AQAPH--G-LWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTK--GGRAGW 267 (492)
T ss_pred cCCh--hhhhHHHHHH-Hhhc----cccCC--C-ceeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEe--CCeEEE
Confidence 1111 1222221111 1111 11110 1 56899999999999999999999999999999999987 666677
Q ss_pred EEeCCC-----cEEEcCEEEEC-CCCCCCCCCccchhhhhhhhhhhcccCCCce-EEEEEEEeCCC
Q 015413 317 VRLASG-----QDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGK-VARGICITRSS 375 (407)
Q Consensus 317 V~~~~G-----~~i~Ad~VI~~-p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~-~~k~i~i~~~p 375 (407)
|.+.+| +++.||+||++ |...+.++. ..+.+|+......++.++.. ...+.+.+++.
T Consensus 268 v~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll--~~~~~~~~~~~~~~~~~~s~~~~~v~l~~~~~ 331 (492)
T TIGR02733 268 VVVVDSRKQEDLNVKADDVVANLPPQSLLELL--GPLGLPPGYRKRLKKLPEPSGAFVFYLGVKRA 331 (492)
T ss_pred EEEecCCCCceEEEECCEEEECCCHHHHHHhc--CcccCCHHHHHHHhcCCCCCceEEEEEeeccc
Confidence 876665 57999999963 333334443 23566665444334444443 55777888873
No 12
>PRK07233 hypothetical protein; Provisional
Probab=99.95 E-value=6.1e-26 Score=226.56 Aligned_cols=287 Identities=15% Similarity=0.151 Sum_probs=183.1
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccccccC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ 103 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (407)
+|||||||++||+||+.|+++|++|+|||+++++||+++++..+| +
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g---~------------------------------- 46 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGG---L------------------------------- 46 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCC---c-------------------------------
Confidence 589999999999999999999999999999999999999987543 2
Q ss_pred CCCceEEecCCCeEEee-CcHHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChHHHHHHHHHH
Q 015413 104 HPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFF 182 (407)
Q Consensus 104 ~~~~~~idl~Gp~~~~~-~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~~~~ 182 (407)
.+|. |.++++. ...+.+++.++|+...+.+......+.+ +|+.++++. ...++..+.+++.++.++....
T Consensus 47 -----~~d~-g~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 117 (434)
T PRK07233 47 -----PIER-FYHHIFKSDEALLELLDELGLEDKLRWRETKTGYYV--DGKLYPLGT-PLELLRFPHLSLIDKFRLGLLT 117 (434)
T ss_pred -----chhh-hhhhhccccHHHHHHHHHcCCCCceeeccCceEEEE--CCeEecCCC-HHHHHcCCCCCHHHHHHhHHHH
Confidence 2344 3444433 3478888999998766555443333333 565554432 2234444455555555433222
Q ss_pred HHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhchhhHHHHHHHHHHhhc
Q 015413 183 KLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIG 262 (407)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~s~~ 262 (407)
...... . ...+..+.++.+|++++..++..+.++... ....+..++ +++|+..++..+..+...
T Consensus 118 ~~~~~~-~----------~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~s~~~~~~~~~~~~~~-- 181 (434)
T PRK07233 118 LLARRI-K----------DWRALDKVPAEEWLRRWSGEGVYEVFWEPL-LESKFGDYA--DDVSAAWLWSRIKRRGNR-- 181 (434)
T ss_pred Hhhhhc-c----------cccccccccHHHHHHHhcCHHHHHHHHHHH-HhcccCCCc--cccCHHHHHHHHhhhhcc--
Confidence 111110 0 012345689999999765444444443321 111122332 346765544444322110
Q ss_pred cccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE-CCCCCCCCC
Q 015413 263 RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFTVPGS 341 (407)
Q Consensus 263 ~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~-~p~~~~~~~ 341 (407)
........+.+|+||++.|+++|++.+...|++|++|++|++|..+ +++++.+. .++++++||+||+ .|...+.++
T Consensus 182 ~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~--~~~~~~~~-~~~~~~~ad~vI~a~p~~~~~~l 258 (434)
T PRK07233 182 RYSLFGEKLGYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVID--GGGVTGVE-VDGEEEDFDAVISTAPPPILARL 258 (434)
T ss_pred ccccCCceEeccCCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEc--CCceEEEE-eCCceEECCEEEECCCHHHHHhh
Confidence 0100011267899999999999999999999999999999999986 56655555 6778899999995 455554554
Q ss_pred CccchhhhhhhhhhhcccCCCceEEEEEEEeCCCC
Q 015413 342 LASSHQQLQESFQAFSLSDNKGKVARGICITRSSL 376 (407)
Q Consensus 342 ~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~ 376 (407)
. |++|+......+...+..+.++.+.+++|+
T Consensus 259 l----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 289 (434)
T PRK07233 259 V----PDLPADVLARLRRIDYQGVVCMVLKLRRPL 289 (434)
T ss_pred c----CCCcHHHHhhhcccCccceEEEEEEecCCC
Confidence 2 445554444445566777888899999985
No 13
>PLN02268 probable polyamine oxidase
Probab=99.95 E-value=3.8e-26 Score=228.27 Aligned_cols=276 Identities=13% Similarity=0.145 Sum_probs=170.6
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccccccC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ 103 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (407)
+|||||||++||+||+.|+++|++|+||||++|+|||++|.+..|
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~g----------------------------------- 46 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFG----------------------------------- 46 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcCC-----------------------------------
Confidence 799999999999999999999999999999999999999864322
Q ss_pred CCCceEEecCCCeEEee---CcHHHHHHHhcCcccccccccccceeeEccCC-ceeecCCCHHHHhhhccCChHHHHHH-
Q 015413 104 HPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATFMLDADA-KLCSVPDSRAAIFKDKSLGLMEKNQL- 178 (407)
Q Consensus 104 ~~~~~~idl~Gp~~~~~---~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g-~~~~~p~~~~~~~~~~~l~~~~k~~l- 178 (407)
+.+|+ |+++++. +..+.+++.++|+..+... .+..+++. ++ ..+.+... . ...++......+
T Consensus 47 ----~~~d~-G~~~i~~~~~~~~~~~l~~~lgl~~~~~~--~~~~~~~~-~~~~~~~~~~~--~---~~~~~~~~~~~~~ 113 (435)
T PLN02268 47 ----FPVDM-GASWLHGVCNENPLAPLIGRLGLPLYRTS--GDNSVLYD-HDLESYALFDM--D---GNQVPQELVTKVG 113 (435)
T ss_pred ----cccCC-CCeeEeccCCCchHHHHHHHhCCceEecc--CCcccccc-ccccccceecC--C---CCCCCHHHHHHHH
Confidence 33677 6898864 2357888999998644221 11112221 11 10000000 0 001111111111
Q ss_pred ---HHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCC-------hhhHHHHHHHH-Hh-ccCCcchhhhhhc
Q 015413 179 ---MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLP-------HKIKSIVLYAI-AM-ADYDQEVSEYVLK 246 (407)
Q Consensus 179 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~-------~~~~~~~~~~~-~~-~~~~~~~~~~~~s 246 (407)
.+++..+.... .....+.|+.+|++++... ...+.++.+.+ .+ ..+..++ +++|
T Consensus 114 ~~~~~~~~~~~~~~------------~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ls 179 (435)
T PLN02268 114 ETFERILEETEKVR------------DEHEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCRMEGWFAADA--DTIS 179 (435)
T ss_pred HHHHHHHHHHHHHH------------hccCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHHHHHHhCCCh--HhCc
Confidence 22222221110 0124567888987654211 12233332211 11 1123333 2344
Q ss_pred hhhHHHHHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEE
Q 015413 247 TRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDIL 326 (407)
Q Consensus 247 ~~~~l~~~~~~~~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~ 326 (407)
+.. +.. ...+. |...++.+|++.|+++|++ |..|++|++|++|..+ ++. +.|++.+|+++.
T Consensus 180 ~~~-------~~~-~~~~~---g~~~~~~~G~~~l~~~l~~-----~~~i~~~~~V~~i~~~--~~~-v~v~~~~g~~~~ 240 (435)
T PLN02268 180 LKS-------WDQ-EELLE---GGHGLMVRGYDPVINTLAK-----GLDIRLNHRVTKIVRR--YNG-VKVTVEDGTTFV 240 (435)
T ss_pred hhh-------cCC-ccccC---CCceeecCCHHHHHHHHhc-----cCceeCCCeeEEEEEc--CCc-EEEEECCCcEEE
Confidence 431 000 00011 1134688899999998864 5579999999999986 344 467778888999
Q ss_pred cCEEEE-CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCCCC
Q 015413 327 SHKLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL 380 (407)
Q Consensus 327 Ad~VI~-~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~~~ 380 (407)
||+||+ .|...+.+..+.|.|+||+.+.+..++..||.+.|+++.|++|||++.
T Consensus 241 ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~~ 295 (435)
T PLN02268 241 ADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPNV 295 (435)
T ss_pred cCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCCC
Confidence 999994 677766654467899999988888788889999999999999999754
No 14
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.94 E-value=8.8e-25 Score=219.51 Aligned_cols=293 Identities=17% Similarity=0.162 Sum_probs=186.0
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccccccC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ 103 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (407)
+|+|||||++||+||+.|+++|++|+|||+++++||+++|++..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~------------------------------------ 44 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDE------------------------------------ 44 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECC------------------------------------
Confidence 58999999999999999999999999999999999999986421
Q ss_pred CCCceEEecCCCeEEeeC-cHHHHHHHhcCcccccccccccceeeEc-cCCcee--ecC---CCH---HHHhh-hccCCh
Q 015413 104 HPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLD-ADAKLC--SVP---DSR---AAIFK-DKSLGL 172 (407)
Q Consensus 104 ~~~~~~idl~Gp~~~~~~-~~~~~~l~~~g~~~~~~f~~~~~~~~~~-~~g~~~--~~p---~~~---~~~~~-~~~l~~ 172 (407)
..+.+|. |+++++.. ..+.+++.++|+.+.+.|......|... .++... .+| ... .++++ ...+++
T Consensus 45 --~g~~~d~-G~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (453)
T TIGR02731 45 --DGDWYET-GLHIFFGAYPNMLQLLKELNIEDRLQWKSHSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTW 121 (453)
T ss_pred --CCCEEEc-CcceeccCCchHHHHHHHcCCccceeecCCceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCH
Confidence 1234666 57776543 4788999999988777665533322211 112221 222 111 12222 123555
Q ss_pred HHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHH--HHHhccCCcchhhhhhchhhH
Q 015413 173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLY--AIAMADYDQEVSEYVLKTRDG 250 (407)
Q Consensus 173 ~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~ 250 (407)
.++.++..-+.. ..... .+...++.++|+.+|+++.+.++.+.+.+.. ..++. ..++ +++|+..+
T Consensus 122 ~~~~~~~~~~~~--~~~~~-------~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~--~~~p--~~~S~~~~ 188 (453)
T TIGR02731 122 PEKIKFAIGLLP--AIVRG-------QKYVEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALN--FINP--DELSMTVV 188 (453)
T ss_pred HHHHHHHHHhHH--HHhcC-------ccchhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHC--CCCH--HHHHHHHH
Confidence 555543321111 00000 0112345689999999999999987764332 22332 2343 34777776
Q ss_pred HHHHHHHHHhhccccCCCcceEeecCC-cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCc-----E
Q 015413 251 INRLALYNSSIGRFQNALGALIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-----D 324 (407)
Q Consensus 251 l~~~~~~~~s~~~~~~~~~~~~~p~gG-~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~-----~ 324 (407)
+..+..++. ..++. ...+..|| ++.++++|++.++..|++|++|++|++|+.+ +++++++|++.+|+ +
T Consensus 189 ~~~l~~~~~--~~~g~---~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~-~~~~v~~v~~~~~~~~~~~~ 262 (453)
T TIGR02731 189 LTALNRFLQ--ERHGS---KMAFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEIVLN-EDGSVKHFVLADGEGQRRFE 262 (453)
T ss_pred HHHHHHHHh--cCCCC---eeEeecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEEEEC-CCCCEEEEEEecCCCCceeE
Confidence 665554442 12221 13344554 5789999999998999999999999999875 36677788887665 7
Q ss_pred EEcCEEEE-CCCCCCCCCCccchhhhh-h-hhhhhcccCCCceEEEEEEEeCCCCCC
Q 015413 325 ILSHKLVL-DPSFTVPGSLASSHQQLQ-E-SFQAFSLSDNKGKVARGICITRSSLKP 378 (407)
Q Consensus 325 i~Ad~VI~-~p~~~~~~~~~~~~p~lp-~-~~~~~~~~~~~g~~~k~i~i~~~p~~~ 378 (407)
+.||.||+ .|...+.++. .+.++ . ..+++ +..+++.++++.+.|++|++.
T Consensus 263 ~~a~~VI~a~p~~~~~~lL---~~~~~~~~~~~~~-~~~~~~~~~~v~l~~~~~~~~ 315 (453)
T TIGR02731 263 VTADAYVSAMPVDIFKLLL---PQPWKQMPFFQKL-NGLEGVPVINVHIWFDRKLTT 315 (453)
T ss_pred EECCEEEEcCCHHHHHhhC---chhhhcCHHHHHh-hcCCCCcEEEEEEEEccccCC
Confidence 99999995 3555556653 11221 1 22333 334477999999999999875
No 15
>PRK07208 hypothetical protein; Provisional
Probab=99.94 E-value=5.3e-25 Score=222.68 Aligned_cols=292 Identities=14% Similarity=0.190 Sum_probs=183.1
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccccc
Q 015413 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS 98 (407)
Q Consensus 19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (407)
||.+.||||||||++||+||+.|+++|++|+|+|+++++||++.|...++
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g------------------------------ 50 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKG------------------------------ 50 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCC------------------------------
Confidence 36678999999999999999999999999999999999999999875433
Q ss_pred ccccCCCCceEEecCCCeEEeeCc-HHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChHHHHH
Q 015413 99 RLLSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ 177 (407)
Q Consensus 99 ~~~~~~~~~~~idl~Gp~~~~~~~-~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~ 177 (407)
+.+|+ |+++++..+ .+.+++.+++..+.+..... ..+++. +|+...+|.+..+.+. .+++.++.+
T Consensus 51 ---------~~~d~-G~h~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~-~g~~~~~p~~~~~~l~--~~~~~~~~~ 116 (479)
T PRK07208 51 ---------NRFDI-GGHRFFSKSPEVMDLWNEILPDDDFLLRPR-LSRIYY-RGKFFDYPLKAFDALK--NLGLWRTAK 116 (479)
T ss_pred ---------ceEcc-CCceeccCCHHHHHHHHHhcCCCccccccc-cceEEE-CCEEecCCcchhHHHH--hCCHhHHHH
Confidence 33666 588776544 67888888876332222221 223333 6788888865333332 233333222
Q ss_pred HHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHH-HHH-HHHHhccCCcchhhhhhchhhHHHHH-
Q 015413 178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS-IVL-YAIAMADYDQEVSEYVLKTRDGINRL- 254 (407)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~l~~~- 254 (407)
+.. ..+.... .....+.++.+|+++. +.+.+.+ ++. +...+ +..++ +++|+.+++.++
T Consensus 117 ~~~--~~~~~~~------------~~~~~~~s~~e~l~~~-~g~~~~~~~~~p~~~~~--~~~~~--~~~s~~~~~~~~~ 177 (479)
T PRK07208 117 CGA--SYLKARL------------RPRKEEDSFEDWVINR-FGRRLYSTFFKGYTEKV--WGVPC--DEISADWAAQRIK 177 (479)
T ss_pred HHH--HHHHHhc------------CCCCCCCCHHHHHHHh-hCHHHHHHHHHHhhhhh--hCCCh--HHCCChHHhCccc
Confidence 111 1111110 0012468999999964 3444443 332 22222 33444 347766533221
Q ss_pred --------HHHHHhh-c-------cccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEE
Q 015413 255 --------ALYNSSI-G-------RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVR 318 (407)
Q Consensus 255 --------~~~~~s~-~-------~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~ 318 (407)
....... + ........+.||+||+++|+++|++.++..|++|++|++|++|..+ +++.++++.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~-~~~~v~~~~ 256 (479)
T PRK07208 178 GLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHD-GDGRIAVVV 256 (479)
T ss_pred CCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEc-CCcEEEEEE
Confidence 1111110 0 0000012377899999999999999999999999999999999986 234343444
Q ss_pred e--CCCc--EEEcCEEEEC-CCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCC
Q 015413 319 L--ASGQ--DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK 377 (407)
Q Consensus 319 ~--~~G~--~i~Ad~VI~~-p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~ 377 (407)
. .+|+ ++.||+||++ |...+.++. .|++|+......+..++..++++.+.++++..
T Consensus 257 ~~~~~g~~~~~~ad~VI~a~p~~~l~~~l---~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~ 317 (479)
T PRK07208 257 VNDTDGTEETVTADQVISSMPLRELVAAL---DPPPPPEVRAAAAGLRYRDFITVGLLVKELNL 317 (479)
T ss_pred EEcCCCCEEEEEcCEEEECCCHHHHHHhc---CCCCCHHHHHHHhCCCcceeEEEEEEecCCCC
Confidence 3 2353 5899999963 544334432 35566666665567778889999999998753
No 16
>PLN02529 lysine-specific histone demethylase 1
Probab=99.94 E-value=8.5e-25 Score=225.98 Aligned_cols=282 Identities=13% Similarity=0.093 Sum_probs=177.8
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccccccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL 100 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (407)
...||+|||||++||+||..|+++|++|+|||+++++||++.|....+
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~-------------------------------- 206 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGR-------------------------------- 206 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccC--------------------------------
Confidence 467999999999999999999999999999999999999999976421
Q ss_pred ccCCCCceEEecCCCeEEeeCc--HHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChHHHHHH
Q 015413 101 LSQHPRNFNLDVSGPRVLFCAD--HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178 (407)
Q Consensus 101 ~~~~~~~~~idl~Gp~~~~~~~--~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l 178 (407)
....+.+|+ |++|+++.. .+..+..+.|+.-+.. .. ...++..+|.......+ +. + ...+
T Consensus 207 ---~g~~~~~Dl-Gaswi~g~~~npl~~la~~lgl~~~~~-~~--~~~~~~~~G~~v~~~~~--~~-----~----~~~~ 268 (738)
T PLN02529 207 ---KGQFAAVDL-GGSVITGIHANPLGVLARQLSIPLHKV-RD--NCPLYKPDGALVDKEID--SN-----I----EFIF 268 (738)
T ss_pred ---CCCceEEec-CCeeccccccchHHHHHHHhCCCcccc-CC--CceEEeCCCcCcchhhh--hh-----H----HHHH
Confidence 001235788 699986543 4666777777643311 11 11133335544321110 00 0 0011
Q ss_pred HHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcC------CChhhHHHHHHHHHhccCCcchhhhhhchhhHHH
Q 015413 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMK------LPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN 252 (407)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~ 252 (407)
.+++..+..+.... ...+.+.|+.+|+++.. +++..+.++.+.+....+.... .++..
T Consensus 269 ~~~l~~~~~l~~~~---------~~~~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a~~~---~~s~L---- 332 (738)
T PLN02529 269 NKLLDKVTELRQIM---------GGFANDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEYANAG---CLSDL---- 332 (738)
T ss_pred HHHHHHHHHHHHhc---------ccCccCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhceecCC---ChHHh----
Confidence 22222222211100 01245789999997543 5555555555432211111110 11211
Q ss_pred HHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413 253 RLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (407)
Q Consensus 253 ~~~~~~~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (407)
.+..+....+ +. ..|...++.||++.|+++|++ +..|+||++|++|..+ ++. +.|+ .++++++||+||+
T Consensus 333 Sl~~~~~~~~-~e-~~G~~~~i~GG~~~Li~aLA~-----~L~IrLnt~V~~I~~~--~dG-VtV~-t~~~~~~AD~VIV 401 (738)
T PLN02529 333 SAAYWDQDDP-YE-MGGDHCFLAGGNWRLINALCE-----GVPIFYGKTVDTIKYG--NDG-VEVI-AGSQVFQADMVLC 401 (738)
T ss_pred hhhHhhhccc-cc-cCCceEEECCcHHHHHHHHHh-----cCCEEcCCceeEEEEc--CCe-EEEE-ECCEEEEcCEEEE
Confidence 1122222111 11 113467899999999999875 2359999999999986 333 4565 4566899999996
Q ss_pred -CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCCC
Q 015413 333 -DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD 379 (407)
Q Consensus 333 -~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~~ 379 (407)
.|..++.+..+.|.|+||+.+.+..++..+|.+.|+++.|++|||+.
T Consensus 402 TVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~FW~~ 449 (738)
T PLN02529 402 TVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVFWGE 449 (738)
T ss_pred CCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCccccC
Confidence 47777665557799999999888889999999999999999999954
No 17
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.94 E-value=7.4e-25 Score=219.95 Aligned_cols=283 Identities=14% Similarity=0.188 Sum_probs=174.9
Q ss_pred cEEEECCChhHHHHHHHHhhCC--CeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccccc
Q 015413 24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL 101 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G--~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (407)
+|||||||++||+||+.|+++| ++|+|||+++++||+++|++.+|
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g--------------------------------- 48 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDG--------------------------------- 48 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCC---------------------------------
Confidence 6999999999999999999988 89999999999999999976543
Q ss_pred cCCCCceEEecCCCeEEeeCc-HHHHHHHhcCcccccccccccceeeEccCCceeecCCCH--------HHHhhhccCCh
Q 015413 102 SQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSR--------AAIFKDKSLGL 172 (407)
Q Consensus 102 ~~~~~~~~idl~Gp~~~~~~~-~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~--------~~~~~~~~l~~ 172 (407)
+.+|+ |+++++..+ .+.+++.++|+..+..+......+++. +|+.+.+|... ...+..+.++.
T Consensus 49 ------~~~d~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 120 (451)
T PRK11883 49 ------FPIEL-GPESFLARKPSAPALVKELGLEDELVANTTGQSYIYV-NGKLHPIPPGTVMGIPTSIAPFLFAGLVSP 120 (451)
T ss_pred ------eEEec-ChHHhcCCcHHHHHHHHHcCCccceecCCCCcceEEE-CCeEEECCCCCeeccCCCchhhhcCCCCCH
Confidence 33666 466544433 578889999987654443212234443 67777776421 01111112221
Q ss_pred HHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhchhhHHH
Q 015413 173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN 252 (407)
Q Consensus 173 ~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~ 252 (407)
.++.+. ...... .......++|+.+|+++. +++...+.+...+....+..++ +++|+...+.
T Consensus 121 ~~~~~~------~~~~~~---------~~~~~~~~~s~~e~l~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~ 182 (451)
T PRK11883 121 IGKLRA------AADLRP---------PRWKPGQDQSVGAFFRRR-FGDEVVENLIEPLLSGIYAGDI--DTLSLRATFP 182 (451)
T ss_pred HHHHHh------hCcccC---------CCCCCCCCcCHHHHHHHh-ccHHHHHHHHHHhhceeecCCh--HHccHHHhHH
Confidence 111111 001100 001234578999999863 5555544333222222233343 3466655443
Q ss_pred HHHHHHHhhc-----------ccc-CCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeC
Q 015413 253 RLALYNSSIG-----------RFQ-NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320 (407)
Q Consensus 253 ~~~~~~~s~~-----------~~~-~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~ 320 (407)
.+..+....+ ... .....+.+++||+++|+++|++.+... +|++|++|++|..+ ++. +.|.++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~--~~~-~~v~~~ 257 (451)
T PRK11883 183 QLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGLQSLIEALEEKLPAG--TIHKGTPVTKIDKS--GDG-YEIVLS 257 (451)
T ss_pred HHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHHHHHHHHHHHhCcCC--eEEeCCEEEEEEEc--CCe-EEEEEC
Confidence 3332221111 000 011236689999999999988755332 89999999999876 444 567778
Q ss_pred CCcEEEcCEEEE-CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCC
Q 015413 321 SGQDILSHKLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL 376 (407)
Q Consensus 321 ~G~~i~Ad~VI~-~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~ 376 (407)
+|+++.||+||+ .|...+.++. ..|++ ....++..++.+.++.+.|++|+
T Consensus 258 ~g~~~~~d~vI~a~p~~~~~~l~--~~~~~----~~~~~~~~~~~~~~v~l~~~~~~ 308 (451)
T PRK11883 258 NGGEIEADAVIVAVPHPVLPSLF--VAPPA----FALFKTIPSTSVATVALAFPESA 308 (451)
T ss_pred CCCEEEcCEEEECCCHHHHHHhc--cChhH----HHHHhCCCCCceEEEEEEecccc
Confidence 999999999995 4655556653 22332 23335667899999999999996
No 18
>PLN02612 phytoene desaturase
Probab=99.94 E-value=2.5e-24 Score=220.43 Aligned_cols=299 Identities=14% Similarity=0.146 Sum_probs=188.8
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccccc
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL 101 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (407)
..||+|||+|++||+||+.|+++|++|+|+|+++++||++.+++..
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~---------------------------------- 138 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDE---------------------------------- 138 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcC----------------------------------
Confidence 4689999999999999999999999999999999999999987531
Q ss_pred cCCCCceEEecCCCeEEeeC-cHHHHHHHhcCcccccccccccceeeEc-cCCcee--e----cCCC---HHHHhh-hcc
Q 015413 102 SQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLD-ADAKLC--S----VPDS---RAAIFK-DKS 169 (407)
Q Consensus 102 ~~~~~~~~idl~Gp~~~~~~-~~~~~~l~~~g~~~~~~f~~~~~~~~~~-~~g~~~--~----~p~~---~~~~~~-~~~ 169 (407)
..+.+|. |+++++.. ..+.+++.++|+.+.++|......+.+. .++... . .|.. ..++++ ...
T Consensus 139 ----~G~~~D~-G~h~~~g~~~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~ 213 (567)
T PLN02612 139 ----DGDWYET-GLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEM 213 (567)
T ss_pred ----CCCEEcC-CceEEeCCCchHHHHHHHhCCcccceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCcc
Confidence 1233666 58877554 3688999999998877776544333221 112221 2 2222 112222 233
Q ss_pred CChHHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhchhh
Q 015413 170 LGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRD 249 (407)
Q Consensus 170 l~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 249 (407)
+++.+|.++..-+ ...... ..+...++++.|+.+|+++.+.++.+.+-++..+...-+..++ +++|+..
T Consensus 214 ls~~~kl~~~~~~--~~~~~~-------~~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p--~~~S~~~ 282 (567)
T PLN02612 214 LTWPEKIKFAIGL--LPAIVG-------GQAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINP--DELSMQC 282 (567)
T ss_pred CCHHHHHHHHHhh--hHHhcc-------cchhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCH--HHhhHHH
Confidence 4444544432211 000000 0011234567899999999999987776333221111122233 3467766
Q ss_pred HHHHHHHHHHhhccccCCCcceEeecCCc-chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcC
Q 015413 250 GINRLALYNSSIGRFQNALGALIYPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSH 328 (407)
Q Consensus 250 ~l~~~~~~~~s~~~~~~~~~~~~~p~gG~-~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad 328 (407)
.+..+..++. ...+ ....++.|+. ..|+++|++.++..|++|++|++|++|+.+ +++++++|++++|++++||
T Consensus 283 ~l~~l~~~l~--~~~g---s~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~-~~g~v~~v~~~~G~~~~ad 356 (567)
T PLN02612 283 ILIALNRFLQ--EKHG---SKMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELN-DDGTVKHFLLTNGSVVEGD 356 (567)
T ss_pred HHHHHHHHHh--ccCC---ceEeeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEEC-CCCcEEEEEECCCcEEECC
Confidence 5555444422 1222 1255666664 679999999888899999999999999986 3666778888899999999
Q ss_pred EEEE-CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCC
Q 015413 329 KLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP 378 (407)
Q Consensus 329 ~VI~-~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~ 378 (407)
+||+ .|...+..+.....++. +...++ +...+..++++.+.|++||+.
T Consensus 357 ~VI~a~p~~~l~~Ll~~~~~~~-~~~~~l-~~l~~~~v~~v~l~~dr~~~~ 405 (567)
T PLN02612 357 VYVSATPVDILKLLLPDQWKEI-PYFKKL-DKLVGVPVINVHIWFDRKLKN 405 (567)
T ss_pred EEEECCCHHHHHHhCcchhcCc-HHHHHH-HhcCCCCeEEEEEEECcccCC
Confidence 9995 46665555432111111 122222 223467899999999999974
No 19
>PLN02676 polyamine oxidase
Probab=99.94 E-value=6.7e-25 Score=220.68 Aligned_cols=285 Identities=11% Similarity=0.066 Sum_probs=171.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCC-eEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR 99 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (407)
..+||||||||++||+||..|+++|. +|+|||+++++||++.+.+..|
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g------------------------------- 73 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAG------------------------------- 73 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCC-------------------------------
Confidence 46899999999999999999999998 6999999999999999865432
Q ss_pred cccCCCCceEEecCCCeEEee-----CcHHHHHHHhcCcccccc-cccccceeeEccCCceeecCCCHHHHhhhccCChH
Q 015413 100 LLSQHPRNFNLDVSGPRVLFC-----ADHAVDLMLKSGASHYLE-FKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLM 173 (407)
Q Consensus 100 ~~~~~~~~~~idl~Gp~~~~~-----~~~~~~~l~~~g~~~~~~-f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~ 173 (407)
+.+|+ |++++.. ...+.+++.+.|+..+.. +... ...++..+|+.. +. +... .
T Consensus 74 --------~~~d~-g~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~-~~~~~~~~g~~~--~~---~~~~------~ 132 (487)
T PLN02676 74 --------VSVEL-GANWVEGVGGPESNPIWELANKLKLRTFYSDFDNL-SSNIYKQDGGLY--PK---KVVQ------K 132 (487)
T ss_pred --------eEEec-CCEEEEcccCcccChHHHHHHhcCCceeecCcccc-ceeEECCCCCCC--CH---HHHH------H
Confidence 34677 5787743 346778888888865532 2221 222333245433 11 1100 0
Q ss_pred HHHHHHHHHHHHHhhcCCCccccccccccccccCCcH--HHHHHhcC-CChhhHHHHHHHHHhccCCcchhhhhhchhhH
Q 015413 174 EKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPF--AEFLTKMK-LPHKIKSIVLYAIAMADYDQEVSEYVLKTRDG 250 (407)
Q Consensus 174 ~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 250 (407)
-...+..+.+.+....... . ..++.+.++ .+++.+.. ....... ..+......+..++ .++|+...
T Consensus 133 ~~~~~~~~~~~~~~~~~~~----~----~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~S~~~~ 201 (487)
T PLN02676 133 SMKVADASDEFGENLSISL----S----AKKAVDISILTAQRLFGQVPKTPLEMV-IDYYNYDYEFAEPP--RVTSLKNT 201 (487)
T ss_pred HHHHHHHHHHHHHHHHHhh----c----ccCCCCccHHHHHHHHhhCCCCHHHHH-HHHHhccceeccCc--cccchhhc
Confidence 0011111111111111100 0 112344555 33444322 1211111 11111101012222 22343221
Q ss_pred HHHHHHHHHhhccccCCCcceEee--cCCcchHHHHHHHHHHh------cCcEEEeCCceeEEEEecCCCcEEEEEeCCC
Q 015413 251 INRLALYNSSIGRFQNALGALIYP--IYGQGELPQAFCRRAAV------KGCLYVLRMPVISLLTDQNSGSYKGVRLASG 322 (407)
Q Consensus 251 l~~~~~~~~s~~~~~~~~~~~~~p--~gG~~~l~~al~r~~~~------~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G 322 (407)
.. ...+...++...+. ++|++.|+++|++.... .++.|+||++|++|..+ ++. +.|++.+|
T Consensus 202 -------~~-~~~~~~~g~~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~--~~g-V~V~~~~G 270 (487)
T PLN02676 202 -------EP-NPTFVDFGEDEYFVADPRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYS--KNG-VTVKTEDG 270 (487)
T ss_pred -------Cc-ccccccCCCceEEeecCCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEc--CCc-EEEEECCC
Confidence 10 01111111122343 68999999999875422 23689999999999986 333 57888899
Q ss_pred cEEEcCEEEE-CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCCC
Q 015413 323 QDILSHKLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD 379 (407)
Q Consensus 323 ~~i~Ad~VI~-~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~~ 379 (407)
++++||+||+ .|..++....+.|+|+||+.+.+..++..||.+.|+++.|++|||+.
T Consensus 271 ~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~ 328 (487)
T PLN02676 271 SVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKFWPS 328 (487)
T ss_pred CEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCCCCC
Confidence 9999999995 57777665446799999999888888899999999999999999975
No 20
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.94 E-value=1.2e-25 Score=214.20 Aligned_cols=312 Identities=13% Similarity=0.056 Sum_probs=176.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR 99 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (407)
+...||||||+|++||+||+.|.|+|++|+|||+++|+|||+.+.+- + .+|++..|+.
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~-~-~~~~d~gG~~-------------------- 62 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARA-G-GEYTDLGGQY-------------------- 62 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEec-c-ceeeccCCcc--------------------
Confidence 56789999999999999999999999999999999999999999765 2 3454433332
Q ss_pred cccCCCCceEEecCCCeEEeeCcHHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChHHHHHHH
Q 015413 100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM 179 (407)
Q Consensus 100 ~~~~~~~~~~idl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~ 179 (407)
+...++.+.....+.|+.........+....+ .+.....|. .+.. .+.+.+...
T Consensus 63 -----------------i~p~~~~~l~~~k~~gv~~~~fi~~g~~~~~~--~~~~~~~p~----~~~~---~~~d~~~~~ 116 (450)
T COG1231 63 -----------------INPTHDALLAYAKEFGVPLEPFIRDGDNVIGY--VGSSKSTPK----RSLT---AAADVRGLV 116 (450)
T ss_pred -----------------cCccchhhhhhHHhcCCCCCceeccCcccccc--cccccccch----hccc---hhhhhcchh
Confidence 22244455555555555432111111110000 111111111 1100 011111111
Q ss_pred -HHHHHHHhhcCCCccccccccccccccCCcHHHH----HHhcCCChhhHHHHHHHHHhccCCcchhhhhhchhhHHHHH
Q 015413 180 -RFFKLVQGHLSLDESEENNVRISEEDLDSPFAEF----LTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRL 254 (407)
Q Consensus 180 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~ 254 (407)
.+...........+. ......+.+.+++.+| ++.+.....++- ... ..++ .+++....+..
T Consensus 117 ~~~~~~a~~~~~~~~~---~t~~~~e~~~~~~~~W~~~~~~~~~~~~~a~~------~~g--~~~~--~~~~~~~d~~~- 182 (450)
T COG1231 117 AELEAKARSAGELDPG---LTPEDRELDLESLAAWKTSSLRGLSRDPGARV------SPG--PIEP--GDVSLLHDALP- 182 (450)
T ss_pred hhhhhhhhcccccCcc---cCcchhhhhhHHHHhhhhccccccccCcccee------ccC--CCCc--ccccchhhhhh-
Confidence 111111111111111 0011234455777787 221111111110 000 0111 01111110110
Q ss_pred HHHHHhhccccC--CCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413 255 ALYNSSIGRFQN--ALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (407)
Q Consensus 255 ~~~~~s~~~~~~--~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (407)
........+..+ ...+.+.+.|||+.|+++|+ ...|..|.++++|.+|.++ ++| +.|++.+.+++.||.|||
T Consensus 183 ~~~~~~~~~~~~~e~~~~~~~~~GGmd~la~Afa---~ql~~~I~~~~~V~rI~q~-~~g--V~Vt~~~~~~~~ad~~i~ 256 (450)
T COG1231 183 LRSASVVDRGIGGEIRTQMLQRLGGMDQLAEAFA---KQLGTRILLNEPVRRIDQD-GDG--VTVTADDVGQYVADYVLV 256 (450)
T ss_pred hhhhhhccccccccccchhhccCccHHHHHHHHH---HHhhceEEecCceeeEEEc-CCe--EEEEeCCcceEEecEEEE
Confidence 111111212111 11224456699999999997 4678999999999999997 244 578766657899999996
Q ss_pred -CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCCCCC-----------cEEEEeCCCCCCceEEEEe
Q 015413 333 -DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLS-----------NFLVIFPPRCKIDSWYFCL 400 (407)
Q Consensus 333 -~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~~~~-----------~~~~~~p~~~~~~~~~~~~ 400 (407)
.|..++.+ +.|+|+||+.+++..+..+|++..|..+.|++|||.+.+ ...+.+|+..-.++...++
T Consensus 257 tiPl~~l~q--I~f~P~l~~~~~~a~~~~~y~~~~K~~v~f~rpFWee~~~l~G~~~tD~~~~~i~~~s~~~~~G~gVl~ 334 (450)
T COG1231 257 TIPLAILGQ--IDFAPLLPAEYKQAAKGVPYGSATKIGVAFSRPFWEEAGILGGESLTDLGLGFISYPSAPFADGPGVLL 334 (450)
T ss_pred ecCHHHHhh--cccCCCCCHHHHHHhcCcCcchheeeeeecCchhhhhcccCCceEeecCCcceEecCccccCCCceEEE
Confidence 46666677 458999999999999999999999999999999995444 3567777774445544444
Q ss_pred e
Q 015413 401 C 401 (407)
Q Consensus 401 ~ 401 (407)
+
T Consensus 335 g 335 (450)
T COG1231 335 G 335 (450)
T ss_pred e
Confidence 4
No 21
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.94 E-value=5.6e-25 Score=222.93 Aligned_cols=297 Identities=15% Similarity=0.163 Sum_probs=182.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccccccccc
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS 102 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (407)
|||||||||++||+||+.|+++|++|+||||++.+||++++++.+|
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G---------------------------------- 46 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREG---------------------------------- 46 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCC----------------------------------
Confidence 6999999999999999999999999999999999999999987654
Q ss_pred CCCCceEEecCCCeEEee------CcHHHHHHHhcCccccccccccccee-eEccCCceeecCCCHHHHhhh-ccCChHH
Q 015413 103 QHPRNFNLDVSGPRVLFC------ADHAVDLMLKSGASHYLEFKSIDATF-MLDADAKLCSVPDSRAAIFKD-KSLGLME 174 (407)
Q Consensus 103 ~~~~~~~idl~Gp~~~~~------~~~~~~~l~~~g~~~~~~f~~~~~~~-~~~~~g~~~~~p~~~~~~~~~-~~l~~~~ 174 (407)
|.+|. |++++.. ...+.+.|...+. .+++...+..+ +..++|..+.++.+....... ....+.+
T Consensus 47 -----~~fd~-g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~l~~~~P~~ 118 (493)
T TIGR02730 47 -----YRFDV-GASMIFGFGDKGTTNLLTRALAAVGR--KLETIPDPVQIHYHLPNGLNVKVHREYDDFIQELVAKFPHE 118 (493)
T ss_pred -----EEEEe-cchhheecCCcccccHHHHHHHHcCC--cccccCCCccEEEECCCCeeEeeecCHHHHHHHHHHHCchh
Confidence 33444 3554321 2234445554442 24443333222 222356667777765433321 2234677
Q ss_pred HHHHHHHHHHHHhhcC------CCcc--ccccc----c------ccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccC
Q 015413 175 KNQLMRFFKLVQGHLS------LDES--EENNV----R------ISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADY 236 (407)
Q Consensus 175 k~~l~~~~~~~~~~~~------~~~~--~~~~~----~------~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~ 236 (407)
...+.+|++.+++... ..+. ..... . ....+..+++.++++++..++.++.++.........
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~ 198 (493)
T TIGR02730 119 KEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFFKHPLACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSV 198 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHhhchhhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccC
Confidence 7778887766443211 0000 00000 0 011233478899999998999999976532111111
Q ss_pred CcchhhhhhchhhHHHHHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEE
Q 015413 237 DQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKG 316 (407)
Q Consensus 237 ~~~~~~~~~s~~~~l~~~~~~~~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~g 316 (407)
... ++.+. +..+..+. ...++ ..++|.||++.|+++|.+.+++.|++|+++++|++|..+ ++++++
T Consensus 199 ~p~---~~~p~---~~~~~~~~--~~~~~----g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~--~~~~~g 264 (493)
T TIGR02730 199 VPA---DQTPM---INAGMVFS--DRHYG----GINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILE--NGKAVG 264 (493)
T ss_pred CCc---ccchh---hhHHHhhc--ccccc----eEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEec--CCcEEE
Confidence 110 01222 11111111 11122 267899999999999999999999999999999999986 678889
Q ss_pred EEeCCCcEEEcCEEEEC--CCCCCCCCCccchhhhhhhhhhh-cccCCCceEEEEEEEeCCCCC
Q 015413 317 VRLASGQDILSHKLVLD--PSFTVPGSLASSHQQLQESFQAF-SLSDNKGKVARGICITRSSLK 377 (407)
Q Consensus 317 V~~~~G~~i~Ad~VI~~--p~~~~~~~~~~~~p~lp~~~~~~-~~~~~~g~~~k~i~i~~~p~~ 377 (407)
|++.+|++++||+||++ |..++.++. + ...+|...... .+.....+...+.+.+++++.
T Consensus 265 v~~~~g~~~~ad~vV~a~~~~~~~~~Ll-~-~~~~~~~~~~~~~~~~~s~s~~~~~l~l~~~~~ 326 (493)
T TIGR02730 265 VKLADGEKIYAKRIVSNATRWDTFGKLL-K-AENLPKKEKNWQRNYVKSPSFLSLHLGVKADVL 326 (493)
T ss_pred EEeCCCCEEEcCEEEECCChHHHHHHhC-C-ccccchhhHHHHhhccCCCceEEEEEEecCccC
Confidence 99989999999999964 444444442 1 11233222211 122223456778888887543
No 22
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.92 E-value=3.5e-23 Score=214.89 Aligned_cols=284 Identities=12% Similarity=0.103 Sum_probs=174.8
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccccccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL 100 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (407)
...||+|||||++||+||+.|++.|++|+|+|+++++||++.+++..+.
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~------------------------------- 285 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGD------------------------------- 285 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCC-------------------------------
Confidence 3579999999999999999999999999999999999999999876430
Q ss_pred ccCCCCceEEecCCCeEEeeCc--HHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChHHHHHH
Q 015413 101 LSQHPRNFNLDVSGPRVLFCAD--HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178 (407)
Q Consensus 101 ~~~~~~~~~idl~Gp~~~~~~~--~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l 178 (407)
.-.+.+|+ |+++++... .+..++.++|+..+. .... .. ++..+|+.+..... +. ....+
T Consensus 286 ----~~~~~~d~-Gas~i~g~~~npl~~l~~~lgl~~~~-~~~~-~~-~~~~dG~~~~~~~~--~~---------v~~~f 346 (808)
T PLN02328 286 ----GVVAAADL-GGSVLTGINGNPLGVLARQLGLPLHK-VRDI-CP-LYLPDGKAVDAEID--SK---------IEASF 346 (808)
T ss_pred ----CcceeccC-CceeecCCCccHHHHHHHHcCCceEe-cCCC-ce-EEeCCCcCcchhhh--hh---------HHHHH
Confidence 01234677 588886542 566778888875331 1111 11 22235654321100 00 01112
Q ss_pred HHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhc------CCChhhHHHHHHHHHhccCCcchhhhhhchhhHHH
Q 015413 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKM------KLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN 252 (407)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~ 252 (407)
.+++..+.++..... . .....+.|+.+|++++ ..++..+.++.+.++..-+.... .++. +
T Consensus 347 ~~lL~~~~klr~~~~---~----~~~~~D~SLg~~le~~~~~~~~~~~~~e~~Ll~w~lanlE~~~gs---~ls~---L- 412 (808)
T PLN02328 347 NKLLDRVCKLRQAMI---E----EVKSVDVNLGTALEAFRHVYKVAEDPQERMLLNWHLANLEYANAS---LMSN---L- 412 (808)
T ss_pred HHHHHHHHHHHHhhh---h----cccccCcCHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHhccchh---hHHH---H-
Confidence 233332222111000 0 0112457888888742 23444444443322211111100 0111 1
Q ss_pred HHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413 253 RLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (407)
Q Consensus 253 ~~~~~~~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (407)
.+..+.... .+ ...+...++.||++.|+++|++.+ + |++|++|++|..+ ++. +.| +.+|++++||+||+
T Consensus 413 Sl~~w~qd~-~~-e~~G~~~~v~GG~~~Li~aLa~~L---~--I~ln~~V~~I~~~--~dg-V~V-~~~G~~~~AD~VIv 481 (808)
T PLN02328 413 SMAYWDQDD-PY-EMGGDHCFIPGGNDTFVRELAKDL---P--IFYERTVESIRYG--VDG-VIV-YAGGQEFHGDMVLC 481 (808)
T ss_pred Hhhhhhccc-cc-cCCCeEEEECCcHHHHHHHHHhhC---C--cccCCeeEEEEEc--CCe-EEE-EeCCeEEEcCEEEE
Confidence 111111100 11 111336678999999999998643 3 9999999999986 333 345 35788999999996
Q ss_pred -CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCCC
Q 015413 333 -DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD 379 (407)
Q Consensus 333 -~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~~ 379 (407)
.|..++.+..+.|.|+||+.+.+..++..+|.+.|+++.|+++||..
T Consensus 482 TvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW~~ 529 (808)
T PLN02328 482 TVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNFWGG 529 (808)
T ss_pred CCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccC
Confidence 57777775556789999999888889999999999999999999964
No 23
>PLN02568 polyamine oxidase
Probab=99.92 E-value=2.1e-23 Score=211.47 Aligned_cols=300 Identities=10% Similarity=0.044 Sum_probs=172.0
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCC-----CeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccc
Q 015413 19 EPTAFDLIVIGTGLPESVISAAASASG-----KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEI 93 (407)
Q Consensus 19 ~~~~~DVvVIGaGl~GL~aA~~La~~G-----~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (407)
++...||||||||++||+||..|+++| ++|+|||+++++||+++|.+..+
T Consensus 2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~g------------------------- 56 (539)
T PLN02568 2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFGG------------------------- 56 (539)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeCC-------------------------
Confidence 456689999999999999999999988 99999999999999999976432
Q ss_pred cccccccccCCCCceEEecCCCeEEee--CcHHHHHHHhcCccccc-ccccccc----eeeEccCCceeecCCCHHHHhh
Q 015413 94 SNYASRLLSQHPRNFNLDVSGPRVLFC--ADHAVDLMLKSGASHYL-EFKSIDA----TFMLDADAKLCSVPDSRAAIFK 166 (407)
Q Consensus 94 ~~~~~~~~~~~~~~~~idl~Gp~~~~~--~~~~~~~l~~~g~~~~~-~f~~~~~----~~~~~~~g~~~~~p~~~~~~~~ 166 (407)
+.+|+ |+++++. ...+.+++.+.|+.... .|...+. ...+..+|..+ +. ++..
T Consensus 57 --------------~~~d~-G~~~~~g~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~---~~~~ 116 (539)
T PLN02568 57 --------------ERIEM-GATWIHGIGGSPVYKIAQEAGSLESDEPWECMDGFPDRPKTVAEGGFEV--DP---SIVE 116 (539)
T ss_pred --------------eEEec-CCceeCCCCCCHHHHHHHHhCCccccCcceecccccccceEEccCCcCC--CH---HHHH
Confidence 34777 5888764 34778888898885442 2222111 11222233211 11 1100
Q ss_pred hccCChHHHHHHHHHHHHHHhhcCCCccc--cccccc-------cccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCC
Q 015413 167 DKSLGLMEKNQLMRFFKLVQGHLSLDESE--ENNVRI-------SEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYD 237 (407)
Q Consensus 167 ~~~l~~~~k~~l~~~~~~~~~~~~~~~~~--~~~~~~-------~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 237 (407)
.-...+..++..+.......... .+...+ .....+.++.+||++.. .+.+.....-... ..+.
T Consensus 117 ------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~Sl~~fl~~~l-~~~~~~~~~p~~~-~~~~ 188 (539)
T PLN02568 117 ------SISTLFRGLMDDAQGKLIEPSEVDEVDFVKLAAKAARVCESGGGGSVGSFLRRGL-DAYWDSVSADEQI-KGYG 188 (539)
T ss_pred ------HHHHHHHHHHHHhhcccccccccccccccccchhccchhccCCCCcHHHHHHHHH-HHHHhhcccchhh-cccc
Confidence 00111122222221110000000 000000 00012347888887411 0000000000000 0000
Q ss_pred cchhhhhhchhhHHHHHHHHHH-----------hh---ccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCcee
Q 015413 238 QEVSEYVLKTRDGINRLALYNS-----------SI---GRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVI 303 (407)
Q Consensus 238 ~~~~~~~~s~~~~l~~~~~~~~-----------s~---~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~ 303 (407)
.++ .+.+....+..+..+.. +. ..+...+|...++.||++.|.++|++.+ .+..|++|++|+
T Consensus 189 ~~~--~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~g~~~~i~gG~~~Li~~La~~L--~~~~I~ln~~V~ 264 (539)
T PLN02568 189 GWS--RKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFPGEEITIAKGYLSVIEALASVL--PPGTIQLGRKVT 264 (539)
T ss_pred chh--HHHHHHHHHHHHHHhhccccccccHhhccccccCcceecCCCeEEECCcHHHHHHHHHhhC--CCCEEEeCCeEE
Confidence 000 01111111111111110 00 1111112446789999999999998754 356899999999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEcCEEEE-CCCCCCCCC----CccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCC
Q 015413 304 SLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFTVPGS----LASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP 378 (407)
Q Consensus 304 ~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~-~p~~~~~~~----~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~ 378 (407)
+|..+ ++. +.|++++|++++||+||+ .|..++... .+.|+|+||+.+.+..++..+|.+.|+++.|++|||.
T Consensus 265 ~I~~~--~~~-v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~ 341 (539)
T PLN02568 265 RIEWQ--DEP-VKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLPDFKTDAISRLGFGVVNKLFVELSPRPDG 341 (539)
T ss_pred EEEEe--CCe-EEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCCCCHHHHHHHHhcCCceeeEEEEEecCCCCC
Confidence 99986 443 467788998999999995 576666632 2468999999888888999999999999999999875
No 24
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.92 E-value=5.8e-23 Score=206.49 Aligned_cols=298 Identities=17% Similarity=0.162 Sum_probs=189.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccccccC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ 103 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (407)
+|+|||||++||+||..|+++|++|+|+|+++++||+++++...
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~------------------------------------ 44 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDG------------------------------------ 44 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecC------------------------------------
Confidence 58999999999999999999999999999999999999986321
Q ss_pred CCCceEEecCCCeEEeeCc-HHHHHHHhcCcccccccccccceeeEccCCcee--------ecC-CCHHHHhhhccCChH
Q 015413 104 HPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLC--------SVP-DSRAAIFKDKSLGLM 173 (407)
Q Consensus 104 ~~~~~~idl~Gp~~~~~~~-~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~--------~~p-~~~~~~~~~~~l~~~ 173 (407)
..|.+|. |+++++... .+.+++.+.|+.+.+.+......|.. .+++.. ..| .....+++.+.+++.
T Consensus 45 --~g~~~d~-G~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~P~~~~~~~l~~~~ls~~ 120 (474)
T TIGR02732 45 --DGNHIEM-GLHVFFGCYANLFRLMKKVGAEDNLLLKEHTHTFVN-KGGDIGELDFRFATGAPFNGLKAFFTTSQLKWV 120 (474)
T ss_pred --CCceEee-ceEEecCchHHHHHHHHHcCCccccccccceeEEEc-CCCcccccccCCCCCCchhhhHHHhcCCCCCHH
Confidence 1344677 588876544 67788888998766555432222322 133321 123 123356666778888
Q ss_pred HHHHHHHHHHH---HHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhchhhH
Q 015413 174 EKNQLMRFFKL---VQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDG 250 (407)
Q Consensus 174 ~k~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 250 (407)
+|.++...... .+....- . ...+......++|+.+|+++++.++.+.+.++..+....+..++ +++|+..+
T Consensus 121 dklr~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~--~~~Sa~~~ 194 (474)
T TIGR02732 121 DKLRNALALGTSPIVRGLVDY-D---GAMKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDC--ENISARCM 194 (474)
T ss_pred HHHHHHHHhhhhHHHhhcccc-c---hhhhhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCH--HHHHHHHH
Confidence 88776553311 1111000 0 00011223456999999999999987555444322222223333 35777766
Q ss_pred HHHHHHHHHhhccccCCCcceEeecCCcch-HHHHHHHHHHhcCcEEEeCCceeEEEEecC-CC--cEEEEEeCCC---c
Q 015413 251 INRLALYNSSIGRFQNALGALIYPIYGQGE-LPQAFCRRAAVKGCLYVLRMPVISLLTDQN-SG--SYKGVRLASG---Q 323 (407)
Q Consensus 251 l~~~~~~~~s~~~~~~~~~~~~~p~gG~~~-l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~-~g--~~~gV~~~~G---~ 323 (407)
+..+..+. .++.+ ....+++||.++ +++.+.+.+++.|++|+++++|++|+.+.. ++ ++++|++.+| +
T Consensus 195 ~~~~~~~~--~~~~~---s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~ 269 (474)
T TIGR02732 195 LTIFMLFA--AKTEA---SKLRMLKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKK 269 (474)
T ss_pred HHHHHHHH--hCCCc---ceeeeecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcce
Confidence 55444322 12222 226788999877 678899999999999999999999998621 12 3677777544 5
Q ss_pred EEEcCEEEE-CCCCCCCCCCccchhhhh---hhhhhhcccCCCceEEEEEEEeCCCCC
Q 015413 324 DILSHKLVL-DPSFTVPGSLASSHQQLQ---ESFQAFSLSDNKGKVARGICITRSSLK 377 (407)
Q Consensus 324 ~i~Ad~VI~-~p~~~~~~~~~~~~p~lp---~~~~~~~~~~~~g~~~k~i~i~~~p~~ 377 (407)
++.||+||+ .|.....++. |+++ +....+ +......++-+.+-|++|+.
T Consensus 270 ~~~aD~VVlA~p~~~~~~Ll----~~~~~~~~~~~~l-~~l~~~pi~~v~l~~~~~v~ 322 (474)
T TIGR02732 270 VIKADAYVAACDVPGIKRLL----PQEWRQFEEFDNI-YKLDAVPVATVQLRYDGWVT 322 (474)
T ss_pred EEECCEEEECCChHHHHhhC----ChhhhcCHHHhhH-hcCCCCCeEEEEEEeccccc
Confidence 689999995 4665556653 3322 223333 33445678888889987664
No 25
>PLN02487 zeta-carotene desaturase
Probab=99.92 E-value=1.2e-22 Score=206.08 Aligned_cols=301 Identities=17% Similarity=0.158 Sum_probs=189.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccccccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL 100 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (407)
+..+|+|||+|++||++|..|+++|++|+|+|+++++||+++++...
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~--------------------------------- 120 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDK--------------------------------- 120 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeec---------------------------------
Confidence 34699999999999999999999999999999999999999987421
Q ss_pred ccCCCCceEEecCCCeEEeeCc-HHHHHHHhcCcccccccccccceeeEccCCce------eecCCC---HHHHhhhccC
Q 015413 101 LSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKL------CSVPDS---RAAIFKDKSL 170 (407)
Q Consensus 101 ~~~~~~~~~idl~Gp~~~~~~~-~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~------~~~p~~---~~~~~~~~~l 170 (407)
..+.+|. |+++++... .+.+++.+.|+.+.+.+......|.. .+|.. ++++.. ...+++.+.+
T Consensus 121 -----~g~~~e~-G~h~~~~~~~~~~~ll~~LGl~~~~~~~~~~~~~~~-~~g~~~~~~~~~p~~~pl~~~~~~l~~~~L 193 (569)
T PLN02487 121 -----NGNHIEM-GLHVFFGCYNNLFRLMKKVGADENLLVKDHTHTFVN-KGGDVGELDFRFPVGAPLHGIKAFLTTNQL 193 (569)
T ss_pred -----CCcEEec-ceeEecCCcHHHHHHHHhcCCcccccccccceeEEe-cCCEEeeeccCCCCCchhhhHHHHHcCCCC
Confidence 1234666 588776543 78889999999776655432222322 24443 122221 1145556677
Q ss_pred ChHHHHHHHHHH--H-HHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhch
Q 015413 171 GLMEKNQLMRFF--K-LVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKT 247 (407)
Q Consensus 171 ~~~~k~~l~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 247 (407)
++.+|.++..-+ . .+.... .+. ...+......+.|+.+|+++++.++++.+-++..+....+..++ +++|+
T Consensus 194 s~~dklr~~~~l~~~~~~~al~--~~~--~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~--d~~SA 267 (569)
T PLN02487 194 EPYDKARNALALATSPVVRALV--DPD--GAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDC--DNISA 267 (569)
T ss_pred CHHHHHhhcccccccchhhhcc--Ccc--ccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCH--HHHHH
Confidence 777776653211 1 011110 000 00011223456999999999988875555444333332233343 45787
Q ss_pred hhHHHHHHHHHHhhccccCCCcceEeecCCcch-HHHHHHHHHHhcCcEEEeCCceeEEEEecC-CC--cEEEEEe---C
Q 015413 248 RDGINRLALYNSSIGRFQNALGALIYPIYGQGE-LPQAFCRRAAVKGCLYVLRMPVISLLTDQN-SG--SYKGVRL---A 320 (407)
Q Consensus 248 ~~~l~~~~~~~~s~~~~~~~~~~~~~p~gG~~~-l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~-~g--~~~gV~~---~ 320 (407)
..++..+..+. ... . .+...|++||.++ |++.+++.++..||+|+++++|++|+.+.+ ++ ++++|++ .
T Consensus 268 ~~~~~vl~~~~--~~~-~--~~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~ 342 (569)
T PLN02487 268 RCMLTIFSLFA--TKT-E--ASLLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKAT 342 (569)
T ss_pred HHHHHHHHHHh--hcC-C--cceeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCC
Confidence 76665553221 111 1 1226799999995 999999999999999999999999998621 22 3778887 3
Q ss_pred CCcEEEcCEEEE-CCCCCCCCCCccchhhhhhh---hhhhcccCCCceEEEEEEEeCCCCC
Q 015413 321 SGQDILSHKLVL-DPSFTVPGSLASSHQQLQES---FQAFSLSDNKGKVARGICITRSSLK 377 (407)
Q Consensus 321 ~G~~i~Ad~VI~-~p~~~~~~~~~~~~p~lp~~---~~~~~~~~~~g~~~k~i~i~~~p~~ 377 (407)
+++++.||+||+ .|...+.++. |+.+.. ...+. ....-.++-+.+-||+|+.
T Consensus 343 ~~~~~~aD~VV~A~p~~~~~~Ll----p~~~~~~~~~~~l~-~L~~~pi~tv~L~~d~~v~ 398 (569)
T PLN02487 343 EKEIVKADAYVAACDVPGIKRLL----PEQWREYEFFDNIY-KLVGVPVVTVQLRYNGWVT 398 (569)
T ss_pred CceEEECCEEEECCCHHHHHHhC----CchhhccHHHhHHh-cCCCeeEEEEEEEeccccc
Confidence 455789999995 3555556653 332222 33442 2224556667778887764
No 26
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.92 E-value=3.4e-23 Score=201.96 Aligned_cols=283 Identities=17% Similarity=0.206 Sum_probs=182.8
Q ss_pred cEEEECCChhHHHHHHHHhhCC--CeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccccc
Q 015413 24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL 101 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G--~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (407)
.|+|||||++||+||++|+|+| ..|+|||+.+++||...|++.+|
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G--------------------------------- 48 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDG--------------------------------- 48 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCC---------------------------------
Confidence 4899999999999999999999 99999999999999999986654
Q ss_pred cCCCCceEEecCCCeEEeeC-cHHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChHHHHHHHH
Q 015413 102 SQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMR 180 (407)
Q Consensus 102 ~~~~~~~~idl~Gp~~~~~~-~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~~ 180 (407)
|.+|. ||+.++.. ..+++++.++|.++.+.+......|++. +|+++++|... ++.-+.+...+...+.+
T Consensus 49 ------~~~e~-G~~~f~~~~~~~l~li~eLGled~l~~~~~~~~~i~~-~gkl~p~P~~~--i~~ip~~~~~~~~~~~~ 118 (444)
T COG1232 49 ------FLFER-GPHHFLARKEEILDLIKELGLEDKLLWNSTARKYIYY-DGKLHPIPTPT--ILGIPLLLLSSEAGLAR 118 (444)
T ss_pred ------EEEee-chhheecchHHHHHHHHHhCcHHhhccCCcccceEee-CCcEEECCccc--eeecCCccccchhHHHH
Confidence 44677 57766555 5788999999999998887666566665 89999999863 33333222212233333
Q ss_pred HHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhchhhHHHHHHH----
Q 015413 181 FFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLAL---- 256 (407)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~---- 256 (407)
++........ .....+.++.+|++++ +.+++.+.+...+.-.-|..+. +++|+..+...+..
T Consensus 119 ~~~~~~~~~~-----------~~~~~d~sv~~f~r~~-fG~ev~~~~~~pll~giy~~~~--~~LS~~~~~p~~~~~e~~ 184 (444)
T COG1232 119 ALQEFIRPKS-----------WEPKQDISVGEFIRRR-FGEEVVERFIEPLLEGIYAGDA--DKLSAAAAFPILARAERK 184 (444)
T ss_pred HHHhhhcccC-----------CCCCCCcCHHHHHHHH-HhHHHHHHHHHHHhhchhcCCH--HHhhHHHhcchhhhhhhh
Confidence 3322211100 1235678999999854 3444444222211111133332 34776622222111
Q ss_pred HHHhh-c--ccc--C---CCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcC
Q 015413 257 YNSSI-G--RFQ--N---ALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSH 328 (407)
Q Consensus 257 ~~~s~-~--~~~--~---~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad 328 (407)
|...+ + +-+ + ..+.+.+++||+++++++|++.+... |+++++|++|..+ ... +++.+.+|.++.||
T Consensus 185 ~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~~l~~al~~~l~~~---i~~~~~V~~i~~~--~~~-~~~~~~~g~~~~~D 258 (444)
T COG1232 185 YGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEALAEKLEAK---IRTGTEVTKIDKK--GAG-KTIVDVGGEKITAD 258 (444)
T ss_pred hcchhhhhhhccCcccccccccccccCccHHHHHHHHHHHhhhc---eeecceeeEEEEc--CCc-cEEEEcCCceEEcc
Confidence 11110 0 000 0 11347789999999999999876655 9999999999986 332 35556789999999
Q ss_pred EEEE-CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCC
Q 015413 329 KLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSS 375 (407)
Q Consensus 329 ~VI~-~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p 375 (407)
.||+ .|.+.+.++. ++ .+....+ ....+-+++.+++.++++
T Consensus 259 ~VI~t~p~~~l~~ll----~~-~~~~~~~-~~~~~~s~~~vv~~~~~~ 300 (444)
T COG1232 259 GVISTAPLPELARLL----GD-EAVSKAA-KELQYTSVVTVVVGLDEK 300 (444)
T ss_pred eEEEcCCHHHHHHHc----CC-cchhhhh-hhccccceEEEEEEeccc
Confidence 9995 5766666654 22 1122222 333466788889999986
No 27
>PLN03000 amine oxidase
Probab=99.91 E-value=1.5e-22 Score=210.12 Aligned_cols=283 Identities=13% Similarity=0.098 Sum_probs=169.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccccccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL 100 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (407)
...||||||||++||+||..|++.|++|+|+|+++++||++.|.+..+
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g-------------------------------- 230 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEA-------------------------------- 230 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccC--------------------------------
Confidence 457999999999999999999999999999999999999999987543
Q ss_pred ccCCCCceEEecCCCeEEeeCc--HHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChHHHHHH
Q 015413 101 LSQHPRNFNLDVSGPRVLFCAD--HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178 (407)
Q Consensus 101 ~~~~~~~~~idl~Gp~~~~~~~--~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l 178 (407)
....+.+|+ |++|++... .+..++.++|+.-+ .+......| ..+|+.. |.+....+ ...+
T Consensus 231 ---~~~~~~~Dl-Gas~i~g~~~npl~~L~~qlgl~l~-~~~~~~~ly--~~~Gk~v--~~~~~~~v---------e~~f 292 (881)
T PLN03000 231 ---NRVGAAADL-GGSVLTGTLGNPLGIIARQLGSSLY-KVRDKCPLY--RVDGKPV--DPDVDLKV---------EVAF 292 (881)
T ss_pred ---CCCceEeec-CCeEEeCCCccHHHHHHHHcCCcee-ecCCCCeEE--EeCCcCC--chhhhhhH---------HHHH
Confidence 012356888 589986654 45566778887633 222222222 2366543 21110000 0111
Q ss_pred HHHHHHHHhhcCCCccccccccccccccCCcHHHHHHh------cCCChhhHHHHHHHHHhccCCcchhhhhhchhhHHH
Q 015413 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTK------MKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN 252 (407)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~ 252 (407)
..++..+.++..... ....+.++.++++. ..+.++.+.++.+.+....+.... .++. +
T Consensus 293 n~lLd~~~~lr~l~~---------~~~~D~SLg~aLe~~~~~~g~~~t~e~~~Ll~w~lanLE~~~as---~ls~---L- 356 (881)
T PLN03000 293 NQLLDKASKLRQLMG---------DVSMDVSLGAALETFRQVSGNDVATEEMGLFNWHLANLEYANAG---LVSK---L- 356 (881)
T ss_pred HHHHHHHHHHHHHhc---------ccCcCCcHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHhccccc---CHHH---H-
Confidence 122222111110000 00112334333221 122333333332221111011000 0111 1
Q ss_pred HHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413 253 RLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (407)
Q Consensus 253 ~~~~~~~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (407)
.+..+.... .+. ..+...+++||++.|+++|++.+ .|+++++|++|.++ ++. +.|++ +++++.||+||+
T Consensus 357 Sl~~wdqd~-~~e-~~G~~~~v~GG~~~LieaLa~~L-----~I~Ln~~Vt~I~~~--~dg-V~V~~-~~~~~~AD~VIv 425 (881)
T PLN03000 357 SLAFWDQDD-PYD-MGGDHCFLPGGNGRLVQALAENV-----PILYEKTVQTIRYG--SNG-VKVIA-GNQVYEGDMVLC 425 (881)
T ss_pred HHHHhhhcc-ccc-CCCceEEeCCCHHHHHHHHHhhC-----CcccCCcEEEEEEC--CCe-EEEEE-CCcEEEeceEEE
Confidence 111111100 111 11336678999999999998643 39999999999986 333 45664 446899999996
Q ss_pred -CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCCCC
Q 015413 333 -DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL 380 (407)
Q Consensus 333 -~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~~~ 380 (407)
.|..++....+.|.|+||+.+.+..++..+|.+.|+++.|+++||+..
T Consensus 426 TVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~FW~~d 474 (881)
T PLN03000 426 TVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTD 474 (881)
T ss_pred cCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccCC
Confidence 587777754577999999998888899999999999999999999643
No 28
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.91 E-value=1.3e-22 Score=201.60 Aligned_cols=278 Identities=15% Similarity=0.150 Sum_probs=177.7
Q ss_pred HHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccccccCCCCceEEecCCC
Q 015413 36 VISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGP 115 (407)
Q Consensus 36 ~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~idl~Gp 115 (407)
+||+.|+++|++|+|||+++++||+++|++.++. .+.+|. |+
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~-------------------------------------~~~~d~-G~ 42 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGL-------------------------------------GQTIDN-GQ 42 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCCC-------------------------------------Ccceec-CC
Confidence 4899999999999999999999999999875431 123677 58
Q ss_pred eEEeeC-cHHHHHHHhcCcccccccccccceeeEccCCce-------eecCCCH-HHHhhhccCChHHHHHHHHHHHHHH
Q 015413 116 RVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKL-------CSVPDSR-AAIFKDKSLGLMEKNQLMRFFKLVQ 186 (407)
Q Consensus 116 ~~~~~~-~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~-------~~~p~~~-~~~~~~~~l~~~~k~~l~~~~~~~~ 186 (407)
++++.. ..+.+++.++|+.....+.. ....++..++.. .+.|... ..+...+.+++.++.++.+++..+.
T Consensus 43 ~~~~~~~~~~~~l~~~lgl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 121 (419)
T TIGR03467 43 HVLLGAYTNLLALLRRIGAEPRLQGPR-LPLPFYDPGGRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLALR 121 (419)
T ss_pred EEEEcccHHHHHHHHHhCCchhhhccc-CCcceecCCCCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 887654 47888899999887765422 222222223331 1122211 1223445677777777766554333
Q ss_pred hhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhchhhHHHHHHHHHHhhccccC
Q 015413 187 GHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQN 266 (407)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~s~~~~~~ 266 (407)
... ..++.++|+.+|+++++.++.+.+.+...+....+..++ +++|+..++..+.. .+.....
T Consensus 122 ~~~------------~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~s~~~~~~~~~~---~~~~~~~ 184 (419)
T TIGR03467 122 RTR------------FRALDDTTVGDWLQAAGQSERLIERLWEPLLLSALNTPP--ERASAALAAKVLRD---SFLAGRA 184 (419)
T ss_pred hcC------------ccccCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHH---HHhcCCC
Confidence 211 123467899999999888887777544322222233444 34676554443322 1111111
Q ss_pred CCcceEeecCCcchHH-HHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE-CCCCCCCCCCcc
Q 015413 267 ALGALIYPIYGQGELP-QAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFTVPGSLAS 344 (407)
Q Consensus 267 ~~~~~~~p~gG~~~l~-~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~-~p~~~~~~~~~~ 344 (407)
...+.||+||++++. ++|++.+++.|++|++|++|++|..+ ++++..+...+|+++.||+||+ .|...+.++.
T Consensus 185 -~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~--~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll-- 259 (419)
T TIGR03467 185 -ASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEAN--AGGIRALVLSGGETLPADAVVLAVPPRHAASLL-- 259 (419)
T ss_pred -cceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEc--CCcceEEEecCCccccCCEEEEcCCHHHHHHhC--
Confidence 122789999998876 55888888889999999999999986 4543322224788899999995 4666656542
Q ss_pred chhhhhhhhhhhcccCCCceEEEEEEEeCCCCCC
Q 015413 345 SHQQLQESFQAFSLSDNKGKVARGICITRSSLKP 378 (407)
Q Consensus 345 ~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~ 378 (407)
|+ + ...+..+...++.+.++.+.+++|+|.
T Consensus 260 --~~-~-~~~~~l~~~~~~~~~~v~l~~~~~~~~ 289 (419)
T TIGR03467 260 --PG-E-DLGALLTALGYSPITTVHLRLDRAVRL 289 (419)
T ss_pred --CC-c-hHHHHHhhcCCcceEEEEEEeCCCcCC
Confidence 21 1 233334566789999999999999963
No 29
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.88 E-value=7.9e-22 Score=196.75 Aligned_cols=114 Identities=16% Similarity=0.075 Sum_probs=89.1
Q ss_pred eEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE-CCCCCCCCCCccchhhh
Q 015413 271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFTVPGSLASSHQQL 349 (407)
Q Consensus 271 ~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~-~p~~~~~~~~~~~~p~l 349 (407)
.....+|+..+.++++. |..|+++..|.+|.+.. ++. +.|++.++..+.||+||+ .|-.++..-.+.|+|+|
T Consensus 211 ~~~~~~G~~~v~~~la~-----~l~I~~~~~v~~i~~~~-~~~-~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~L 283 (501)
T KOG0029|consen 211 HLLMKGGYEPVVNSLAE-----GLDIHLNKRVRKIKYGD-DGA-VKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPL 283 (501)
T ss_pred hhHhhCCccHHHhhcCC-----CcceeeceeeEEEEEec-CCc-eEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCC
Confidence 45678999999887764 89999999999999972 443 345555666699999884 67776666557799999
Q ss_pred hhhhhhhcccCCCceEEEEEEEeCCCCCCCCCcEEEEeCCCC
Q 015413 350 QESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRC 391 (407)
Q Consensus 350 p~~~~~~~~~~~~g~~~k~i~i~~~p~~~~~~~~~~~~p~~~ 391 (407)
|..+++..++...|.+.|+++.|++.||........+.|...
T Consensus 284 p~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~fg~~~~~~ 325 (501)
T KOG0029|consen 284 PRWKQEAIDRLGFGLVNKVILEFPRVFWDQDIDFFGIVPETS 325 (501)
T ss_pred cHHHHHHHHhcCCCceeEEEEEeccccCCCCcCeEEEccccc
Confidence 999999999999999999999999999953333444444444
No 30
>PLN02976 amine oxidase
Probab=99.88 E-value=3.9e-21 Score=204.61 Aligned_cols=106 Identities=12% Similarity=0.027 Sum_probs=85.5
Q ss_pred cceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecC-------CCcEEEEEeCCCcEEEcCEEEE-CCCCCCCC
Q 015413 269 GALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQN-------SGSYKGVRLASGQDILSHKLVL-DPSFTVPG 340 (407)
Q Consensus 269 ~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~-------~g~~~gV~~~~G~~i~Ad~VI~-~p~~~~~~ 340 (407)
|..++++||++.|+++|++.+ .|+||++|++|.+... ++.-+.|++.+|+++.||+||+ .|..++..
T Consensus 926 G~~~rIkGGYqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVPLGVLKa 1000 (1713)
T PLN02976 926 GAHCMIKGGYSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPLGCLKA 1000 (1713)
T ss_pred CceEEeCCCHHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCCHHHhhh
Confidence 346679999999999998643 4999999999988410 1122567788999999999996 47666664
Q ss_pred CCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCCC
Q 015413 341 SLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD 379 (407)
Q Consensus 341 ~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~~ 379 (407)
-.+.|+|+||+.+.+..++..||.+.|+++.|++|||+.
T Consensus 1001 g~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~ 1039 (1713)
T PLN02976 1001 ETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDD 1039 (1713)
T ss_pred cccccCCcccHHHHHHHHhhccccceEEEEEeCCccccC
Confidence 346799999999888888999999999999999999964
No 31
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.85 E-value=3.3e-21 Score=181.61 Aligned_cols=81 Identities=35% Similarity=0.431 Sum_probs=68.2
Q ss_pred cceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC--CCCCCCCCCccch
Q 015413 269 GALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD--PSFTVPGSLASSH 346 (407)
Q Consensus 269 ~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~--p~~~~~~~~~~~~ 346 (407)
+.+.||+|||++|+.++++.+++.|++|.+++.|++|..| +|+++||+++||++++++.||+| |-.++.++.. .
T Consensus 254 g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd--~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp--~ 329 (561)
T KOG4254|consen 254 GGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLD--SGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLP--G 329 (561)
T ss_pred CcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheecc--CCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCC--C
Confidence 4488999999999999999999999999999999999998 79999999999999999999964 5555555431 2
Q ss_pred hhhhhhh
Q 015413 347 QQLQESF 353 (407)
Q Consensus 347 p~lp~~~ 353 (407)
-.||++.
T Consensus 330 e~LPeef 336 (561)
T KOG4254|consen 330 EALPEEF 336 (561)
T ss_pred ccCCchh
Confidence 2466663
No 32
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.78 E-value=9.4e-18 Score=160.33 Aligned_cols=110 Identities=15% Similarity=0.046 Sum_probs=81.4
Q ss_pred eEeecCCcchHHHHHHHHHH----hcC--cEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCC-CC
Q 015413 271 LIYPIYGQGELPQAFCRRAA----VKG--CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPG-SL 342 (407)
Q Consensus 271 ~~~p~gG~~~l~~al~r~~~----~~G--g~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~-p~~~~~~-~~ 342 (407)
.....-|...+..-|.+.+. ++| ++++++++|.+|..+ ++++ +.|++.||+.+.||+|||+ +--++.+ -.
T Consensus 215 ~~~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~-~~~~-v~l~c~dg~v~~adhVIvTvsLGvLk~~h~ 292 (498)
T KOG0685|consen 215 LIWNKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWK-NTGE-VKLRCSDGEVFHADHVIVTVSLGVLKEQHH 292 (498)
T ss_pred heechhHHHHHHHHHhccCCCcchhcCchhhhcccccceeeccC-CCCc-EEEEEeCCcEEeccEEEEEeechhhhhhhh
Confidence 33445567777776655332 233 556667999999986 3566 4789999999999999964 4444432 11
Q ss_pred ccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCCCCCc
Q 015413 343 ASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSN 382 (407)
Q Consensus 343 ~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~~~~~ 382 (407)
.-|+|+||+.++...++...|.+-|..+=|++||||..-.
T Consensus 293 ~lF~P~LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~~~ 332 (498)
T KOG0685|consen 293 KLFVPPLPAEKQRAIERLGFGTVNKIFLEFEEPFWPSDWN 332 (498)
T ss_pred hhcCCCCCHHHHHHHHhccCCccceEEEEccCCCCCCCCc
Confidence 2379999999999999999999999999999999986433
No 33
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.77 E-value=8.8e-17 Score=160.76 Aligned_cols=242 Identities=12% Similarity=0.178 Sum_probs=145.1
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhC----CCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccc
Q 015413 18 IEPTAFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEI 93 (407)
Q Consensus 18 ~~~~~~DVvVIGaGl~GL~aA~~La~~----G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (407)
...+..+|+|||||++||+||.+|++. |++|+|||+++++||++.+.....
T Consensus 18 ~~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~------------------------- 72 (576)
T PRK13977 18 EGVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPE------------------------- 72 (576)
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCccccc-------------------------
Confidence 344557999999999999999999996 689999999999999998754211
Q ss_pred cccccccccCCCCceEEecCCCeEEeeCcHHHHHHHhc------C---ccccccccccccee---e-EccCCceeecCCC
Q 015413 94 SNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKS------G---ASHYLEFKSIDATF---M-LDADAKLCSVPDS 160 (407)
Q Consensus 94 ~~~~~~~~~~~~~~~~idl~Gp~~~~~~~~~~~~l~~~------g---~~~~~~f~~~~~~~---~-~~~~g~~~~~p~~ 160 (407)
..|.++. |+.....-..+.++|.+. | .++|..+...++.+ . +..+|..+..
T Consensus 73 ------------~Gy~~~~-G~~~~~~y~~l~~ll~~ipsle~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~~~d~--- 136 (576)
T PRK13977 73 ------------KGYVARG-GREMENHFECLWDLFRSIPSLEDPGASVLDEFYWFNKDDPNYSKARLIHKRGEILDT--- 136 (576)
T ss_pred ------------CCEEEEC-CCCccchHHHHHHHHHhccccCCCCcccccceeeeecCCcccceeeEEcCCCCEEEC---
Confidence 1233444 354322223555665433 1 23556665555442 1 1112322222
Q ss_pred HHHHhhhccCChHHHH--HHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCc
Q 015413 161 RAAIFKDKSLGLMEKN--QLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQ 238 (407)
Q Consensus 161 ~~~~~~~~~l~~~~k~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 238 (407)
..+.+..|. .|.+++ ... ..+..+.++.||+++..+....-. + ...+.++.
T Consensus 137 -------~~~~L~~k~r~~Ll~l~---l~~-------------e~~Ld~~tI~d~f~~~Ff~t~Fw~-~--w~t~FaF~- 189 (576)
T PRK13977 137 -------DKFGLSKKDRKELLKLL---LTP-------------EEKLDDKTIEDWFSPEFFETNFWY-Y--WRTMFAFE- 189 (576)
T ss_pred -------cCCCCCHHHHHHHHHHh---ccC-------------HHHhCCcCHHHHHhhcCchhHHHH-H--HHHHHCCc-
Confidence 223333333 333322 111 123567899999997555432222 1 11222222
Q ss_pred chhhhhhchhhHHHHHHHHHHhhccccCCCcceEeecCC-cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCC--CcEE
Q 015413 239 EVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS--GSYK 315 (407)
Q Consensus 239 ~~~~~~~s~~~~l~~~~~~~~s~~~~~~~~~~~~~p~gG-~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~--g~~~ 315 (407)
+..|+......+.+|+.-+...... .++.+.+|- ...|.+.|.+.+++.|++|+++++|++|..+.++ ++++
T Consensus 190 ----~whSA~E~rry~~rf~~~~~~l~~~-s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~Vt 264 (576)
T PRK13977 190 ----KWHSALEMRRYMHRFIHHIGGLPDL-SGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTAT 264 (576)
T ss_pred ----hhhHHHHHHHHHHHHHHhhccCCcc-ccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEE
Confidence 2467877777777776544443321 123344443 4789999999999999999999999999984113 6788
Q ss_pred EEEeC-CCc--E---EEcCEEEE
Q 015413 316 GVRLA-SGQ--D---ILSHKLVL 332 (407)
Q Consensus 316 gV~~~-~G~--~---i~Ad~VI~ 332 (407)
+|.+. +|+ + ..+|.||+
T Consensus 265 gI~~~~~~~~~~I~l~~~DlViv 287 (576)
T PRK13977 265 AIHLTRNGKEETIDLTEDDLVFV 287 (576)
T ss_pred EEEEEeCCceeEEEecCCCEEEE
Confidence 88764 332 2 36788883
No 34
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.77 E-value=1e-18 Score=173.46 Aligned_cols=98 Identities=17% Similarity=0.112 Sum_probs=76.3
Q ss_pred cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE-CCCCCCCCCCccchhhhhhhhhhh
Q 015413 278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFTVPGSLASSHQQLQESFQAF 356 (407)
Q Consensus 278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~-~p~~~~~~~~~~~~p~lp~~~~~~ 356 (407)
.+.+...++..+...|++|++|++|++|..+ ++++ .|.+.+|++++||+||+ .|...+.+ +.+.|++|..+...
T Consensus 208 ~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~~--~~~v-~v~~~~g~~~~ad~VI~a~p~~~l~~--i~~~p~l~~~~~~a 282 (450)
T PF01593_consen 208 MGGLSLALALAAEELGGEIRLNTPVTRIERE--DGGV-TVTTEDGETIEADAVISAVPPSVLKN--ILLLPPLPEDKRRA 282 (450)
T ss_dssp TTTTHHHHHHHHHHHGGGEESSEEEEEEEEE--SSEE-EEEETTSSEEEESEEEE-S-HHHHHT--SEEESTSHHHHHHH
T ss_pred ccchhHHHHHHHhhcCceeecCCcceecccc--cccc-ccccccceEEecceeeecCchhhhhh--hhhccccccccccc
Confidence 3444444455566778899999999999997 5664 67789999999999995 46666555 34789999966665
Q ss_pred cccCCCceEEEEEEEeCCCCCCCC
Q 015413 357 SLSDNKGKVARGICITRSSLKPDL 380 (407)
Q Consensus 357 ~~~~~~g~~~k~i~i~~~p~~~~~ 380 (407)
.+...+..+.|+++.++++||+..
T Consensus 283 ~~~~~~~~~~~v~l~~~~~~~~~~ 306 (450)
T PF01593_consen 283 IENLPYSSVSKVFLGFDRPFWPPD 306 (450)
T ss_dssp HHTEEEEEEEEEEEEESSGGGGST
T ss_pred ccccccCcceeEEEeeeccccccc
Confidence 588889999999999999999753
No 35
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.75 E-value=1.8e-16 Score=145.54 Aligned_cols=289 Identities=15% Similarity=0.100 Sum_probs=162.9
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccccc
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL 101 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (407)
..+|.|||+|++||+||..|++. ++|+++|+++|+||+++|...+-
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~--------------------------------- 53 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNT--------------------------------- 53 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccc---------------------------------
Confidence 46899999999999999999976 89999999999999999975321
Q ss_pred cCCCCceEEecCCCeEEeeC---cHHHHHHHhcCcccccccccccceeeEccCCceeecCC--CHHHHhhh--ccCChHH
Q 015413 102 SQHPRNFNLDVSGPRVLFCA---DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPD--SRAAIFKD--KSLGLME 174 (407)
Q Consensus 102 ~~~~~~~~idl~Gp~~~~~~---~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~--~~~~~~~~--~~l~~~~ 174 (407)
....+.+|. | .+++.. ..+.++|.+.|++....+-+..- .+ |+.-+++.. ....++.. ..+.+
T Consensus 54 --d~~g~~vDt-G-fiVyn~~tYpnl~~Lf~~iGv~t~as~Msf~v--~~--d~gglEy~g~tgl~~L~aqk~n~l~p-- 123 (447)
T COG2907 54 --DGGGVFVDT-G-FIVYNERTYPNLTRLFKTIGVDTKASFMSFSV--SL--DMGGLEYSGLTGLAGLLAQKRNLLRP-- 123 (447)
T ss_pred --cCCceeecc-e-eEEecCCCcchHHHHHHHcCCCCcccceeEEE--Ee--cCCceeeccCCCccchhhccccccch--
Confidence 011233554 2 333222 26888999999876544432110 11 222222221 11123321 11111
Q ss_pred HHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHH--HhccCCcchhhhhhchhhHHH
Q 015413 175 KNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAI--AMADYDQEVSEYVLKTRDGIN 252 (407)
Q Consensus 175 k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~l~ 252 (407)
++.++++.+........... + .....+.++.+||++.+.+...++-+++-+ +..+.... +++...+ .
T Consensus 124 --Rf~~mlaeiLrf~r~~~~~~---d-~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~----d~~~~pa-~ 192 (447)
T COG2907 124 --RFPCMLAEILRFYRSDLAPS---D-NAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLA----DASRYPA-C 192 (447)
T ss_pred --hHHHHHHHHHHHhhhhccch---h-hhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHh----hhhhhhH-H
Confidence 22222222222111100000 1 123457899999999999988887555422 22221111 1222221 1
Q ss_pred HHHHHHHhhccccCCCcc-eEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 015413 253 RLALYNSSIGRFQNALGA-LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV 331 (407)
Q Consensus 253 ~~~~~~~s~~~~~~~~~~-~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI 331 (407)
.+..|....|-..-.+.+ +..+.||+.+-.+.| ++..+++|+++++|.+|..-+ +|. .|+..+|++-+.|+||
T Consensus 193 ~~~~f~~nhGll~l~~rp~wrtV~ggS~~yvq~l---aa~~~~~i~t~~~V~~l~rlP-dGv--~l~~~~G~s~rFD~vV 266 (447)
T COG2907 193 NFLVFTDNHGLLYLPKRPTWRTVAGGSRAYVQRL---AADIRGRIETRTPVCRLRRLP-DGV--VLVNADGESRRFDAVV 266 (447)
T ss_pred HHHHHHhccCceecCCCCceeEcccchHHHHHHH---hccccceeecCCceeeeeeCC-Cce--EEecCCCCccccceee
Confidence 222333322221111123 445789998888755 467889999999999998863 553 3444679999999988
Q ss_pred --ECCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCC
Q 015413 332 --LDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK 377 (407)
Q Consensus 332 --~~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~ 377 (407)
+.|+..+.-+. +| -|++.+ +.+.. -.+..++++-.|..+.
T Consensus 267 iAth~dqAl~mL~---e~-sp~e~q-ll~a~-~Ys~n~aVlhtd~~lm 308 (447)
T COG2907 267 IATHPDQALALLD---EP-SPEERQ-LLGAL-RYSANTAVLHTDASLM 308 (447)
T ss_pred eecChHHHHHhcC---CC-CHHHHH-HHHhh-hhhhceeEEeeccccc
Confidence 46877643321 23 355655 43444 3456677888887553
No 36
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.70 E-value=1.7e-15 Score=142.86 Aligned_cols=295 Identities=18% Similarity=0.186 Sum_probs=175.6
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEE--EccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccc
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLH--LDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR 99 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~Vlv--lE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (407)
..+|+|+|||++||+||++|++.+-+|+| +|+.+|+||..+|...+
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~-------------------------------- 58 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQ-------------------------------- 58 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCC--------------------------------
Confidence 36899999999999999999999987654 99999999999983221
Q ss_pred cccCCCCceEEecCCCeEEeeCc----HHHHHHHhcCcccccccccccc-----eeeEccCCceeecCCCHHHHhhhccC
Q 015413 100 LLSQHPRNFNLDVSGPRVLFCAD----HAVDLMLKSGASHYLEFKSIDA-----TFMLDADAKLCSVPDSRAAIFKDKSL 170 (407)
Q Consensus 100 ~~~~~~~~~~idl~Gp~~~~~~~----~~~~~l~~~g~~~~~~f~~~~~-----~~~~~~~g~~~~~p~~~~~~~~~~~l 170 (407)
+.|-++. ||.-+...+ ...+++.++|+++.+.-.+... +|++ +.|++..+|.+...... ..+
T Consensus 59 ------ng~ifE~-GPrtlrpag~~g~~~l~lv~dLGl~~e~~~i~~~~paaknr~l~-~~~~L~~vP~sl~~s~~-~~l 129 (491)
T KOG1276|consen 59 ------NGFIFEE-GPRTLRPAGPGGAETLDLVSDLGLEDELQPIDISHPAAKNRFLY-VPGKLPTVPSSLVGSLK-FSL 129 (491)
T ss_pred ------Cceeecc-CCCccCcCCcchhHHHHHHHHcCccceeeecCCCChhhhheeec-cCcccccCCcccccccc-ccc
Confidence 1222334 455442222 5788899999986544322221 3444 37889899986543111 112
Q ss_pred ChHHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhchhhH
Q 015413 171 GLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDG 250 (407)
Q Consensus 171 ~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 250 (407)
.+.-|..+..|+....+... .....|+++.+|.++. +.+++.+.+...+..+-|+.|+ .++|....
T Consensus 130 ~p~~k~L~~a~l~e~fr~~~-----------~~~~~dESV~sF~~Rr-fG~eV~d~~isp~i~GiyAgD~--~~LSmk~~ 195 (491)
T KOG1276|consen 130 QPFGKPLLEAFLRELFRKKV-----------SDPSADESVESFARRR-FGKEVADRLISPFIRGIYAGDP--SELSMKSS 195 (491)
T ss_pred CcccchhHHHHHhhhccccC-----------CCCCccccHHHHHHHh-hhHHHHHHHHHHHhCccccCCh--HHhhHHHH
Confidence 23344444444432211100 1124578999999852 3367777666554444567776 45888766
Q ss_pred HHHHHHHHHhhcc---------cc--------------CCCc--ceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEE
Q 015413 251 INRLALYNSSIGR---------FQ--------------NALG--ALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISL 305 (407)
Q Consensus 251 l~~~~~~~~s~~~---------~~--------------~~~~--~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I 305 (407)
+..+.......|. +. .... +.+-.+||+..++++|++.+......|.++-++.-+
T Consensus 196 F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~ 275 (491)
T KOG1276|consen 196 FGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGN 275 (491)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccccc
Confidence 6555432222220 00 0001 134579999999999999988888888999999888
Q ss_pred EEecCCCcEEEEEeCCCcE-EEcCEEEE-CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCC
Q 015413 306 LTDQNSGSYKGVRLASGQD-ILSHKLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSS 375 (407)
Q Consensus 306 ~~~~~~g~~~gV~~~~G~~-i~Ad~VI~-~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p 375 (407)
....+++-..+.+..+++. ...+++.+ -|...+..+. |++.+.........++-.++-++.-|.++
T Consensus 276 sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~ll----~~~~~sls~~L~ei~y~~V~vVn~~yp~~ 343 (491)
T KOG1276|consen 276 SKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLAKLL----RGLQNSLSNALSEIPYVPVAVVNTYYPKE 343 (491)
T ss_pred cccccCCceeEeEcCCCceeeeccccccccchHHhhhhc----cccchhhhhhhhcCCCCceEEEEEeccCc
Confidence 7653233223333344432 23333332 2433334432 34444444444455677788888888885
No 37
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=1e-13 Score=135.32 Aligned_cols=293 Identities=16% Similarity=0.112 Sum_probs=158.0
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccccccC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ 103 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (407)
.|+|+|||++||+||..|+++|++|+|+|+++++||++.++.... |.+
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~d--------g~~------------------------ 49 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSD--------GNH------------------------ 49 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCC--------CCe------------------------
Confidence 599999999999999999999999999999999999999976432 111
Q ss_pred CCCceEEecCCCeEEeeCc-HHHHHHHhcCcccccccccccceeeEc--cCCce--eecCCC------HHHHhhhccCCh
Q 015413 104 HPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLD--ADAKL--CSVPDS------RAAIFKDKSLGL 172 (407)
Q Consensus 104 ~~~~~~idl~Gp~~~~~~~-~~~~~l~~~g~~~~~~f~~~~~~~~~~--~~g~~--~~~p~~------~~~~~~~~~l~~ 172 (407)
.+. |=++++..- .++.+|.+.+.+..+.++.....++-. ..|.+ ++.|.. ..+.++.+.+..
T Consensus 50 ------~E~-glh~f~~~Y~n~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~~~ 122 (485)
T COG3349 50 ------VEH-GLHVFFGCYYNLLTLLKELPIEDRLQLREHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQLPR 122 (485)
T ss_pred ------eee-eeEEechhHHHHHHHhhhCCchheeehHhhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhccccCH
Confidence 111 334444332 678888888887666665543333211 11221 111111 112223333333
Q ss_pred HHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHH-HHH-HHHHhccCCcchhhhhhchhhH
Q 015413 173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS-IVL-YAIAMADYDQEVSEYVLKTRDG 250 (407)
Q Consensus 173 ~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~ 250 (407)
.+|..+ +-.+..... .......+.++.++.+||++.+....... .+. .+.++. +. ++ +..|+...
T Consensus 123 ~~~~~~---~~~l~~~~~------g~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~-f~-~~--e~~sa~~~ 189 (485)
T COG3349 123 REKIRF---VLRLGDAPI------GADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALT-FI-DP--EGCSARFF 189 (485)
T ss_pred HHHhHH---hhccccccc------hhHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhc-cc-Cc--ccCcchhH
Confidence 333322 111000000 00122446778999999998776644332 221 111221 11 11 23455443
Q ss_pred HHHHHHHHHhhccccCCCcceEeecCCcch-HHHHHHHHHHhcCcEEEeCCceeEEEEec--CCCcEEEEEeCCCcEEEc
Q 015413 251 INRLALYNSSIGRFQNALGALIYPIYGQGE-LPQAFCRRAAVKGCLYVLRMPVISLLTDQ--NSGSYKGVRLASGQDILS 327 (407)
Q Consensus 251 l~~~~~~~~s~~~~~~~~~~~~~p~gG~~~-l~~al~r~~~~~Gg~i~l~~~V~~I~~~~--~~g~~~gV~~~~G~~i~A 327 (407)
+..+..+ ++...+. ......+|+..+ +.+...+.+.+.|.+++++.+|+.|..+. ++.+++|+.+. +....+
T Consensus 190 lt~~~~~--~~~~~~~--~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~e~ 264 (485)
T COG3349 190 LTILNLF--LIVTLEA--SILRNLRGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQEQ 264 (485)
T ss_pred HHHHHHH--HHhccCc--chhhhhcCCCcceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeec-CcceEe
Confidence 3333222 1222111 113346777554 44666777888999999999999998862 13446788765 666666
Q ss_pred CEEE--ECCCCCCCCCCc--cchhhhhhhhhhhcccCCCceEEEEEEEeCCC
Q 015413 328 HKLV--LDPSFTVPGSLA--SSHQQLQESFQAFSLSDNKGKVARGICITRSS 375 (407)
Q Consensus 328 d~VI--~~p~~~~~~~~~--~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p 375 (407)
.+++ ..+.. ++++.. +++-+-.+..+.+... ..-.+++..+.++.-
T Consensus 265 ~~~~~~~~~~~-v~~~~~~~ps~W~~~~~f~~ly~l-~~~p~~~~~l~~~~~ 314 (485)
T COG3349 265 QAALAVVDAFA-VQRFKRDLPSEWPKWSNFDGLYGL-RLVPVITLHLRFDGW 314 (485)
T ss_pred eehhhhhcccc-cchHhhcCcccccccccccccccc-cccceeEEEEeecCc
Confidence 6555 23322 243211 1111112223333222 245678888888863
No 38
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.47 E-value=2.7e-12 Score=124.35 Aligned_cols=43 Identities=26% Similarity=0.428 Sum_probs=40.2
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~ 64 (407)
++||+|||||++||++|..|++.|++|+|+|+++++||.+.+.
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~ 43 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDE 43 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeee
Confidence 3799999999999999999999999999999999999987764
No 39
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.41 E-value=5.5e-13 Score=96.86 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=38.5
Q ss_pred EECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhh
Q 015413 27 VIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIAD 68 (407)
Q Consensus 27 VIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~ 68 (407)
|||||++||+||+.|+++|++|+|+|+++++||++.+...++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g 42 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPG 42 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETT
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECC
Confidence 899999999999999999999999999999999999986543
No 40
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.36 E-value=1.5e-11 Score=116.38 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=51.2
Q ss_pred eEeec-CCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413 271 LIYPI-YGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (407)
Q Consensus 271 ~~~p~-gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (407)
.++|. ...+.|.++|.+.+++.|++|+++++|.+|..+ + ....|.+.+|++++||.+|+
T Consensus 102 r~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~--~-~~f~l~t~~g~~i~~d~lil 161 (408)
T COG2081 102 RMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKD--D-SGFRLDTSSGETVKCDSLIL 161 (408)
T ss_pred eecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEec--C-ceEEEEcCCCCEEEccEEEE
Confidence 45777 789999999999999999999999999999986 3 33578888888999999883
No 41
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.30 E-value=3.9e-11 Score=116.18 Aligned_cols=60 Identities=30% Similarity=0.409 Sum_probs=52.1
Q ss_pred eEeecCC---cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 015413 271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (407)
Q Consensus 271 ~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~ 333 (407)
++.+.+| ...+.++|.+.++..|++|+.+++|++|..+ ++++.+|++.+|+ ++||+||..
T Consensus 136 ~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~--~~~v~gv~~~~g~-i~ad~vV~a 198 (358)
T PF01266_consen 136 VFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVD--GGRVTGVRTSDGE-IRADRVVLA 198 (358)
T ss_dssp EEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEE--TTEEEEEEETTEE-EEECEEEE-
T ss_pred hcccccccccccchhhhhHHHHHHhhhhccccccccchhhc--ccccccccccccc-cccceeEec
Confidence 5678888 7899999999999999999999999999997 7888789998887 999999943
No 42
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.22 E-value=8.4e-11 Score=107.63 Aligned_cols=100 Identities=20% Similarity=0.377 Sum_probs=71.3
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccccc
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL 101 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (407)
++|.+|||||++|++.|..|++.|++|+|+|||+.+||.+-+...+. .| +.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~-------tG-------------Il--------- 51 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQ-------TG-------------IL--------- 51 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCC-------CC-------------eE---------
Confidence 48999999999999999999999999999999999999998864321 00 11
Q ss_pred cCCCCceEEecCCCeEEeeCc-HHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHH
Q 015413 102 SQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAA 163 (407)
Q Consensus 102 ~~~~~~~~idl~Gp~~~~~~~-~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~ 163 (407)
+.-.||++++..+ ..++.+. ++.+|..-.....-..+|..+.+|.+...
T Consensus 52 --------vHkYGpHIFHT~~~~Vwdyv~-----~F~e~~~Y~hrVla~~ng~~~~lP~nl~t 101 (374)
T COG0562 52 --------VHKYGPHIFHTDNKRVWDYVN-----QFTEFNPYQHRVLALVNGQLYPLPFNLNT 101 (374)
T ss_pred --------EeeccCceeecCchHHHHHHh-----hhhhhhhhccceeEEECCeeeeccccHHH
Confidence 1112799998777 4555543 34555554333321228899999987643
No 43
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.19 E-value=6e-10 Score=108.69 Aligned_cols=60 Identities=22% Similarity=0.342 Sum_probs=49.0
Q ss_pred eEeecCC---cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcE-EEcCEEEE
Q 015413 271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD-ILSHKLVL 332 (407)
Q Consensus 271 ~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~-i~Ad~VI~ 332 (407)
.+.|.+| .++++.+|++.+...|++++||++|+.|+.+. +| ++.+.+.+|++ ++|+.||.
T Consensus 142 l~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~-dg-~~~~~~~~g~~~~~ak~Vin 205 (429)
T COG0579 142 LLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQS-DG-VFVLNTSNGEETLEAKFVIN 205 (429)
T ss_pred EEcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeC-Cc-eEEEEecCCcEEEEeeEEEE
Confidence 4556666 57889999999999999999999999999872 43 45566778877 99999994
No 44
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.18 E-value=1e-10 Score=114.85 Aligned_cols=60 Identities=15% Similarity=0.206 Sum_probs=47.4
Q ss_pred eEeecC-CcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413 271 LIYPIY-GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (407)
Q Consensus 271 ~~~p~g-G~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (407)
..||.- -..++.++|.+.+.+.|++|+++++|++|+.+ ++.+..|++.+++++.||+||+
T Consensus 100 r~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~--~~~~f~v~~~~~~~~~a~~vIL 160 (409)
T PF03486_consen 100 RVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK--EDGVFGVKTKNGGEYEADAVIL 160 (409)
T ss_dssp EEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE--TTEEEEEEETTTEEEEESEEEE
T ss_pred EECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec--CCceeEeeccCcccccCCEEEE
Confidence 467766 47899999999999999999999999999987 6666789876888999999994
No 45
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.14 E-value=1.2e-09 Score=107.91 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=46.0
Q ss_pred eEeecCC---cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413 271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (407)
Q Consensus 271 ~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (407)
.+.+.+| ...+.++|.+.++..|++++++++|++|..+ ++. +.|++.+| +++||+||+
T Consensus 138 l~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~--~~~-~~V~~~~g-~i~ad~vV~ 198 (393)
T PRK11728 138 IFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEH--ANG-VVVRTTQG-EYEARTLIN 198 (393)
T ss_pred EEcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEec--CCe-EEEEECCC-EEEeCEEEE
Confidence 4456666 3788899999999999999999999999875 444 46776666 799999994
No 46
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.11 E-value=6e-09 Score=104.98 Aligned_cols=57 Identities=25% Similarity=0.301 Sum_probs=44.5
Q ss_pred eEeecCCc---chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (407)
Q Consensus 271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (407)
.+.+.+|. ..+.++|++.+...|++|+.+++|++|.. ++. +.|++.+| +++||+||+
T Consensus 172 ~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~---~~~-~~v~t~~g-~v~A~~VV~ 231 (460)
T TIGR03329 172 FYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE---GQP-AVVRTPDG-QVTADKVVL 231 (460)
T ss_pred EEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee---CCc-eEEEeCCc-EEECCEEEE
Confidence 55666663 57889999999999999999999999964 232 46776666 699999884
No 47
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.04 E-value=3.7e-09 Score=103.75 Aligned_cols=58 Identities=21% Similarity=0.179 Sum_probs=43.8
Q ss_pred eEeecCCc---chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (407)
Q Consensus 271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (407)
++.+.+|. ..+.++|.+.++..|++++.+++|++|..+ ++. +.|+++++ ++.||+||+
T Consensus 134 ~~~~~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~--~~~-~~v~~~~~-~i~a~~vV~ 194 (380)
T TIGR01377 134 LLDPNGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPT--ELL-VTVKTTKG-SYQANKLVV 194 (380)
T ss_pred EEcCCCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEec--CCe-EEEEeCCC-EEEeCEEEE
Confidence 34455552 467788888888899999999999999875 454 45776555 799999883
No 48
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.02 E-value=8.8e-09 Score=104.04 Aligned_cols=57 Identities=30% Similarity=0.370 Sum_probs=46.2
Q ss_pred ecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeC--CC--cEEEcCEEEE
Q 015413 274 PIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SG--QDILSHKLVL 332 (407)
Q Consensus 274 p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~--~G--~~i~Ad~VI~ 332 (407)
+.+|...+.+.|.+.+++.|++|+++++|++|..+ ++++++|.+. +| .+++|+.||+
T Consensus 126 ~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~--~g~v~gv~~~~~~g~~~~i~a~~VIl 186 (466)
T PRK08274 126 FWGGGKALVNALYRSAERLGVEIRYDAPVTALELD--DGRFVGARAGSAAGGAERIRAKAVVL 186 (466)
T ss_pred ecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec--CCeEEEEEEEccCCceEEEECCEEEE
Confidence 44556778899999999999999999999999886 7888888753 23 3589999994
No 49
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.99 E-value=3e-08 Score=101.93 Aligned_cols=44 Identities=30% Similarity=0.494 Sum_probs=40.3
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 18 ~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
....++||||||+| +|++||...+++|.+|+||||.+.+||.+.
T Consensus 12 ~~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~ 55 (564)
T PRK12845 12 VRDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTA 55 (564)
T ss_pred CCCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCccc
Confidence 44568999999999 999999999999999999999999999765
No 50
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.98 E-value=7.2e-09 Score=101.57 Aligned_cols=60 Identities=27% Similarity=0.227 Sum_probs=44.4
Q ss_pred eEeecCCc---chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-ECC
Q 015413 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP 334 (407)
Q Consensus 271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~p 334 (407)
.+.+.+|. ..+.+++.+.+...|++++++++|++|..+ ++. +.|++++| +++||+|| +..
T Consensus 138 ~~~~~~g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~--~~~-~~v~~~~g-~~~a~~vV~A~G 201 (376)
T PRK11259 138 LFEPDGGFLRPELAIKAHLRLAREAGAELLFNEPVTAIEAD--GDG-VTVTTADG-TYEAKKLVVSAG 201 (376)
T ss_pred EEcCCCCEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEee--CCe-EEEEeCCC-EEEeeEEEEecC
Confidence 34455553 456677777777899999999999999875 444 46777666 79999999 443
No 51
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.98 E-value=1.1e-08 Score=104.97 Aligned_cols=61 Identities=25% Similarity=0.218 Sum_probs=45.8
Q ss_pred ceEeecCC--cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeC---CC--cEEEcCEEEE
Q 015413 270 ALIYPIYG--QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SG--QDILSHKLVL 332 (407)
Q Consensus 270 ~~~~p~gG--~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~---~G--~~i~Ad~VI~ 332 (407)
+++++.|- -..+..++++.+..+|++++.+++|++|..+ ++++++|++. +| .+|+|++||.
T Consensus 138 a~~~~dg~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~d~~~g~~~~i~A~~VVn 205 (546)
T PRK11101 138 AVKVPDGTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIRE--GDTVCGVRVRDHLTGETQEIHAPVVVN 205 (546)
T ss_pred EEEecCcEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEc--CCeEEEEEEEEcCCCcEEEEECCEEEE
Confidence 35566421 2467778888888999999999999999886 6777788753 23 3689999994
No 52
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.97 E-value=1.8e-08 Score=100.03 Aligned_cols=51 Identities=20% Similarity=0.289 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (407)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (407)
.+..+|++.+...|++++.+++|++|+.+ +++++++|++.+| ++.|++||+
T Consensus 184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~~~~v~t~~g-~i~a~~vVv 234 (407)
T TIGR01373 184 AVAWGYARGADRRGVDIIQNCEVTGFIRR-DGGRVIGVETTRG-FIGAKKVGV 234 (407)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEc-CCCcEEEEEeCCc-eEECCEEEE
Confidence 56677888889999999999999999754 2566677887666 699999874
No 53
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.96 E-value=6.6e-08 Score=98.50 Aligned_cols=41 Identities=20% Similarity=0.409 Sum_probs=38.7
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (407)
.++||||||+|.+||+||+.++++|.+|+||||....||..
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s 100 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNT 100 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcc
Confidence 47899999999999999999999999999999999999854
No 54
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.93 E-value=7.3e-10 Score=96.99 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=35.8
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t 63 (407)
++||+|||||.+||+||++|+++|+||+++|++..+||..+.
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~ 58 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWG 58 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccc
Confidence 699999999999999999999999999999999999997754
No 55
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.89 E-value=1.4e-09 Score=94.69 Aligned_cols=41 Identities=17% Similarity=0.261 Sum_probs=38.9
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
+-||||||||.+||+||++||++|.||+|+|++..+||-.+
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w 70 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW 70 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc
Confidence 57999999999999999999999999999999999999765
No 56
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.87 E-value=6.3e-08 Score=101.98 Aligned_cols=58 Identities=22% Similarity=0.241 Sum_probs=46.4
Q ss_pred eEeecCCc---chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (407)
Q Consensus 271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (407)
.++|.+|. ..+.++|.+.+.. |++++.+++|++|..+ ++.+ .|.+.+|..++||+||+
T Consensus 397 ~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~--~~~~-~v~t~~g~~~~ad~VV~ 457 (662)
T PRK01747 397 IFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERE--DDGW-QLDFAGGTLASAPVVVL 457 (662)
T ss_pred EEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEe--CCEE-EEEECCCcEEECCEEEE
Confidence 56677773 5788889888888 9999999999999876 5554 57777777789999993
No 57
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.86 E-value=1.3e-07 Score=94.15 Aligned_cols=59 Identities=25% Similarity=0.318 Sum_probs=46.5
Q ss_pred eEeecCC---cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413 271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (407)
Q Consensus 271 ~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (407)
.+.|..| ...+.++|.+.++..|++|+++++|++|..+ ++++++|++. +.+++||+||+
T Consensus 190 ~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~--~~~~~~v~t~-~~~~~a~~VV~ 251 (416)
T PRK00711 190 LRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE--GGRITGVQTG-GGVITADAYVV 251 (416)
T ss_pred EECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec--CCEEEEEEeC-CcEEeCCEEEE
Confidence 5566655 3477889999888999999999999999876 5666677755 45799999994
No 58
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.85 E-value=1e-07 Score=88.21 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413 282 PQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (407)
Q Consensus 282 ~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (407)
..+|...++.+|+.++-+..|+.+....|++..++|.+++|..+.|+++|.
T Consensus 156 lk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~ 206 (399)
T KOG2820|consen 156 LKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIF 206 (399)
T ss_pred HHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEE
Confidence 356778888999999999999999876566777899999999999999884
No 59
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.85 E-value=6.1e-09 Score=93.45 Aligned_cols=46 Identities=13% Similarity=0.281 Sum_probs=43.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhh
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIAD 68 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~ 68 (407)
.+++|||||++||+||..|+.+|++|+|+||..-+|||..|-++.+
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~ 47 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDG 47 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCC
Confidence 3699999999999999999999999999999999999999987664
No 60
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.82 E-value=7.1e-08 Score=97.28 Aligned_cols=59 Identities=20% Similarity=0.254 Sum_probs=46.0
Q ss_pred eEeecCC----cchHHHHHHHHHHh----cC--cEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413 271 LIYPIYG----QGELPQAFCRRAAV----KG--CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (407)
Q Consensus 271 ~~~p~gG----~~~l~~al~r~~~~----~G--g~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (407)
.+.|..| .+.++++|.+.++. .| ++|+++++|+.|..+ ++..+.|++.+| +++||.||+
T Consensus 199 l~~p~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~--~~~~~~V~T~~G-~i~A~~VVv 267 (497)
T PTZ00383 199 LYVPNELTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERS--NDSLYKIHTNRG-EIRARFVVV 267 (497)
T ss_pred EEeCCCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec--CCCeEEEEECCC-EEEeCEEEE
Confidence 4556443 26889999999888 77 678999999999875 455677887666 799999984
No 61
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.80 E-value=1.8e-07 Score=93.43 Aligned_cols=47 Identities=26% Similarity=0.375 Sum_probs=42.0
Q ss_pred CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413 17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (407)
Q Consensus 17 ~~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t 63 (407)
.+.+.++||+|||||++|+-+|+.+|.+|++|+++|++|.-.|..+.
T Consensus 7 ~~~~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsr 53 (532)
T COG0578 7 RLRMEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSR 53 (532)
T ss_pred cccccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCc
Confidence 34457899999999999999999999999999999999998886554
No 62
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.79 E-value=2.8e-07 Score=93.20 Aligned_cols=43 Identities=14% Similarity=0.137 Sum_probs=37.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCccc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~~ 62 (407)
+..+||||||||+.|+++|+.|++. |++|+||||++.+|+..+
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS 47 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESS 47 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcC
Confidence 4568999999999999999999984 899999999988776543
No 63
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.77 E-value=7.3e-09 Score=102.34 Aligned_cols=43 Identities=21% Similarity=0.367 Sum_probs=40.7
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t 63 (407)
.+|||||||||++|++||+.|+++|++|+|||+++.+|.+..+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~ 44 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC 44 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence 4699999999999999999999999999999999999987766
No 64
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.72 E-value=1.3e-08 Score=94.02 Aligned_cols=42 Identities=19% Similarity=0.248 Sum_probs=39.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
.++||+|||||.+||+||+.|+++|++|+||||+..+||.++
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~ 61 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSW 61 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence 369999999999999999999999999999999999998653
No 65
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.72 E-value=7.7e-07 Score=87.38 Aligned_cols=43 Identities=12% Similarity=0.223 Sum_probs=38.0
Q ss_pred ccEEEECCChhHHHHHHHHhhC----CCeEEEEccCCCCCCcccccc
Q 015413 23 FDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSLS 65 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~----G~~VlvlE~~~~~GG~~~t~~ 65 (407)
.++-|||+|+++|+||+.|-|. |.++++||+.+..||......
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g 49 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAG 49 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCC
Confidence 4688999999999999999876 679999999999999886643
No 66
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.70 E-value=1.7e-08 Score=93.38 Aligned_cols=41 Identities=15% Similarity=0.268 Sum_probs=38.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (407)
.++||+|||||++||+||+.|+++|++|+|+|++..+||.+
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~ 64 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM 64 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence 36899999999999999999999999999999999999854
No 67
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.66 E-value=2.6e-08 Score=99.38 Aligned_cols=40 Identities=30% Similarity=0.507 Sum_probs=37.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (407)
++|||||||||++|++||+.|+++|++|+|||+++.+|.+
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k 43 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAK 43 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCc
Confidence 4699999999999999999999999999999999988764
No 68
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.63 E-value=3.3e-08 Score=99.75 Aligned_cols=45 Identities=24% Similarity=0.322 Sum_probs=41.5
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (407)
Q Consensus 19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t 63 (407)
.|.+|||+|||||.+|+.||..|++.|++|+++|+++.+||.+..
T Consensus 2 ~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~ 46 (461)
T PRK05249 2 HMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTH 46 (461)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccc
Confidence 466799999999999999999999999999999999999998743
No 69
>PRK10015 oxidoreductase; Provisional
Probab=98.62 E-value=3.6e-08 Score=98.28 Aligned_cols=40 Identities=30% Similarity=0.488 Sum_probs=36.7
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (407)
.+|||||||||++|++||+.|+++|++|+|||+.+.+|-+
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k 43 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCK 43 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcc
Confidence 4699999999999999999999999999999999887643
No 70
>PRK07121 hypothetical protein; Validated
Probab=98.59 E-value=6.6e-08 Score=98.30 Aligned_cols=42 Identities=26% Similarity=0.363 Sum_probs=39.1
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
.++||||||+|.+||+||+.++++|.+|+||||....||...
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s~ 60 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATA 60 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCccc
Confidence 469999999999999999999999999999999999998653
No 71
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.58 E-value=4.6e-08 Score=98.69 Aligned_cols=43 Identities=19% Similarity=0.269 Sum_probs=39.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
|++|||||||+|.+|++||..+++.|++|+++|+++.+||.+.
T Consensus 1 m~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~ 43 (466)
T PRK06115 1 MASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCL 43 (466)
T ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeec
Confidence 4569999999999999999999999999999999889999764
No 72
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.55 E-value=8.3e-08 Score=95.43 Aligned_cols=45 Identities=22% Similarity=0.485 Sum_probs=39.2
Q ss_pred CCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413 13 PPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (407)
Q Consensus 13 ~~~~~~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (407)
|..|.-...++||+|||||++||++|..|+++|++|+|+|+++..
T Consensus 9 ~~~~~~~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 9 PTLPSTRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred CCCCCCCccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 445555555799999999999999999999999999999999864
No 73
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.54 E-value=7.2e-08 Score=93.19 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=31.8
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (407)
++||||||||++||++|..|+|+|++|+|+|++...
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 489999999999999999999999999999998764
No 74
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.54 E-value=8.5e-08 Score=95.78 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=45.3
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCe-EEEEccCCCCCCcccccchhh
Q 015413 19 EPTAFDLIVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHFSSLSIAD 68 (407)
Q Consensus 19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~-VlvlE~~~~~GG~~~t~~~~~ 68 (407)
.++.+||+|||||.+||++|++|.++|.. +++|||++.+||.++....++
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~ 55 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPG 55 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCc
Confidence 35679999999999999999999999999 999999999999988766554
No 75
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.53 E-value=8.8e-08 Score=96.09 Aligned_cols=44 Identities=18% Similarity=0.264 Sum_probs=40.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t 63 (407)
+...+|+|||||.+||+||..|+++|.+|+|+|+++.+||.+..
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~ 51 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY 51 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence 34579999999999999999999999999999999999998864
No 76
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.52 E-value=8.6e-08 Score=96.14 Aligned_cols=44 Identities=16% Similarity=0.375 Sum_probs=39.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC-CCCCcccc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP-FYGSHFSS 63 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~-~~GG~~~t 63 (407)
|+.|||||||||.+|+.||..|++.|++|+|+|+.+ .+||.+..
T Consensus 1 ~~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~ 45 (441)
T PRK08010 1 MNKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCIN 45 (441)
T ss_pred CCcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEee
Confidence 457999999999999999999999999999999986 48997753
No 77
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.51 E-value=1.2e-07 Score=96.67 Aligned_cols=42 Identities=29% Similarity=0.430 Sum_probs=38.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (407)
+.+|||||||||++|+.+|+.|++.|++|+|+|+++..+|..
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS 45 (508)
T PRK12266 4 METYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATS 45 (508)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence 457999999999999999999999999999999998877755
No 78
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.51 E-value=9.7e-08 Score=95.67 Aligned_cols=43 Identities=30% Similarity=0.487 Sum_probs=38.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC-CCCccc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF-YGSHFS 62 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~-~GG~~~ 62 (407)
|.+|||||||||.+|++||..|++.|++|+|+|+++. +||.+.
T Consensus 1 ~~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~ 44 (438)
T PRK07251 1 MLTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI 44 (438)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence 3479999999999999999999999999999999875 799653
No 79
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.51 E-value=9.8e-08 Score=95.22 Aligned_cols=40 Identities=30% Similarity=0.501 Sum_probs=34.3
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t 63 (407)
||||||||.+|++||+.+||+|.+|+++|+.+.+||...+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~ 40 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATS 40 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceE
Confidence 8999999999999999999999999999999999998754
No 80
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.50 E-value=1.4e-07 Score=94.50 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=36.9
Q ss_pred CCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 15 YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 15 ~~~~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
-+++...+|||+|||||++|++||..|+++|++|+|+|++..
T Consensus 32 ~~~~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~ 73 (450)
T PLN00093 32 SKKLSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD 73 (450)
T ss_pred CCCcCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 344555679999999999999999999999999999999853
No 81
>PTZ00058 glutathione reductase; Provisional
Probab=98.49 E-value=1.6e-07 Score=96.22 Aligned_cols=55 Identities=20% Similarity=0.313 Sum_probs=45.9
Q ss_pred CCCCCCC-CCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413 8 SELPVPP-YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (407)
Q Consensus 8 ~~~~~~~-~~~~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t 63 (407)
++-|+|+ ++.....+|||||||+|.+|+.||..+++.|++|+++|++ .+||.|..
T Consensus 33 ~~~~~~~~~~~~~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln 88 (561)
T PTZ00058 33 EASSAPTHLKKKPRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVN 88 (561)
T ss_pred cccCcccccccCCCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccc
Confidence 3456676 5554445799999999999999999999999999999996 79997644
No 82
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.49 E-value=1.2e-07 Score=95.55 Aligned_cols=42 Identities=29% Similarity=0.368 Sum_probs=38.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
|.+|||||||||.+|++||..|++.|++|+|+|+ +.+||.+.
T Consensus 1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~ 42 (460)
T PRK06292 1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL 42 (460)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence 4569999999999999999999999999999999 78999765
No 83
>PRK06370 mercuric reductase; Validated
Probab=98.48 E-value=1.4e-07 Score=95.17 Aligned_cols=43 Identities=26% Similarity=0.424 Sum_probs=38.8
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
+|.+|||||||+|.+|++||.+|++.|++|+|+|+. .+||.+.
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~ 44 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCV 44 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCcee
Confidence 567899999999999999999999999999999986 6777654
No 84
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.48 E-value=1.4e-07 Score=92.87 Aligned_cols=40 Identities=33% Similarity=0.471 Sum_probs=36.6
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (407)
Q Consensus 18 ~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (407)
++|..+||||||||++||++|..|+++|++|+|+|+++..
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~ 42 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY 42 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 4566799999999999999999999999999999998765
No 85
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.47 E-value=1.6e-07 Score=88.49 Aligned_cols=37 Identities=24% Similarity=0.430 Sum_probs=35.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (407)
|||+|||||++||++|..|++.|.+|+|+|+++..+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~ 37 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY 37 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence 7999999999999999999999999999999988765
No 86
>PLN02463 lycopene beta cyclase
Probab=98.46 E-value=2.2e-07 Score=92.71 Aligned_cols=48 Identities=29% Similarity=0.627 Sum_probs=43.1
Q ss_pred CCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 9 ELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 9 ~~~~~~~~~~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
..+.|++.+-....|||||||||++||++|+.|+++|++|+|+|++..
T Consensus 15 ~~~~~~~~~~~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~ 62 (447)
T PLN02463 15 DFELPRFDPSKSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL 62 (447)
T ss_pred cccccCCCCccccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc
Confidence 567788887677789999999999999999999999999999999764
No 87
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.46 E-value=1.7e-07 Score=94.75 Aligned_cols=43 Identities=14% Similarity=0.177 Sum_probs=39.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
+.+|||||||||.+|+.||.+|++.|++|+++|+++.+||.+.
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~ 44 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCL 44 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccccc
Confidence 4479999999999999999999999999999999989999663
No 88
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.46 E-value=1.7e-07 Score=93.05 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=35.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (407)
+||||||||+.|+++|+.|+++|++|+||||++.+|+-+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~~a 40 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMET 40 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcCc
Confidence 699999999999999999999999999999998776443
No 89
>PRK06116 glutathione reductase; Validated
Probab=98.46 E-value=1.5e-07 Score=94.70 Aligned_cols=41 Identities=27% Similarity=0.368 Sum_probs=38.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
.+|||||||||.+|++||..|++.|++|+|+|++ .+||.+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~ 43 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCV 43 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhh
Confidence 4699999999999999999999999999999995 8999764
No 90
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.45 E-value=2e-07 Score=94.99 Aligned_cols=44 Identities=32% Similarity=0.481 Sum_probs=38.7
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
++.+|||||||||++|+.+|+.|+++|.+|+|||+++..+|...
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~ 46 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSS 46 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCch
Confidence 35579999999999999999999999999999999987665443
No 91
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.45 E-value=6.8e-06 Score=82.22 Aligned_cols=61 Identities=20% Similarity=0.180 Sum_probs=48.4
Q ss_pred EeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCC-CcEEEcCEEEE
Q 015413 272 IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQDILSHKLVL 332 (407)
Q Consensus 272 ~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~-G~~i~Ad~VI~ 332 (407)
.++.++...+.++|.+.+++.|++|+++++|++|+.+.+++++++|...+ +.+++|+.||+
T Consensus 116 ~~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIl 177 (432)
T TIGR02485 116 AFLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVL 177 (432)
T ss_pred eeecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEE
Confidence 35556677899999999999999999999999998752146777877543 45799999994
No 92
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.45 E-value=1.8e-07 Score=94.38 Aligned_cols=41 Identities=27% Similarity=0.421 Sum_probs=38.3
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t 63 (407)
+|||||||||.+|+.||..|++.|++|+|+|+ +.+||.+..
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~ 41 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLN 41 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceee
Confidence 38999999999999999999999999999999 899997654
No 93
>PRK08013 oxidoreductase; Provisional
Probab=98.44 E-value=1.9e-07 Score=92.47 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=35.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (407)
|.++||+|||||++||++|+.|+++|++|+|+|+++..
T Consensus 1 m~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~ 38 (400)
T PRK08013 1 MQSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPE 38 (400)
T ss_pred CCcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCc
Confidence 45689999999999999999999999999999998863
No 94
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.43 E-value=4.2e-06 Score=83.95 Aligned_cols=58 Identities=31% Similarity=0.423 Sum_probs=48.9
Q ss_pred eEeecCCc---chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 015413 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV 331 (407)
Q Consensus 271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI 331 (407)
.+.|.-|. ..++++|++.|...|+.|.-++||++|... +++..+|++..| .|+|.+||
T Consensus 176 Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~--~~~~~gVeT~~G-~iet~~~V 236 (856)
T KOG2844|consen 176 LYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVE--TDKFGGVETPHG-SIETECVV 236 (856)
T ss_pred eecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEee--cCCccceeccCc-ceecceEE
Confidence 44566663 678999999999999999999999999986 566679998777 59999998
No 95
>PRK09126 hypothetical protein; Provisional
Probab=98.43 E-value=2.1e-07 Score=91.80 Aligned_cols=37 Identities=22% Similarity=0.403 Sum_probs=34.8
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G 58 (407)
++||||||||++||++|..|+++|++|+|+|+++...
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 39 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAA 39 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCccc
Confidence 6999999999999999999999999999999998753
No 96
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.42 E-value=2.1e-07 Score=91.60 Aligned_cols=36 Identities=19% Similarity=0.403 Sum_probs=33.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
|+++||+|||||++||++|+.|+++|++|+|+|++.
T Consensus 1 ~~~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 1 MNKYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 446899999999999999999999999999999875
No 97
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.42 E-value=2.4e-07 Score=93.54 Aligned_cols=43 Identities=21% Similarity=0.383 Sum_probs=38.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t 63 (407)
|.+|||||||+|.+|++||..|++.|++|+++|++ .+||.+..
T Consensus 2 ~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~ 44 (466)
T PRK07818 2 MTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLN 44 (466)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceec
Confidence 45699999999999999999999999999999985 77887654
No 98
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.42 E-value=2e-07 Score=92.82 Aligned_cols=54 Identities=26% Similarity=0.396 Sum_probs=46.4
Q ss_pred CcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeC---CCc--EEEcCEEEE
Q 015413 277 GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL 332 (407)
Q Consensus 277 G~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~---~G~--~i~Ad~VI~ 332 (407)
+...+.+.|.+.+++.|++|+++++|+++.++ +++++||... +|+ +++|+.||+
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e--~g~V~Gv~~~~~~~g~~~~i~A~aVIl 197 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITE--DGRVTGVVAENPADGEFVRIKAKAVIL 197 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEE--TTEEEEEEEEETTTCEEEEEEESEEEE
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEe--CCceeEEEEEECCCCeEEEEeeeEEEe
Confidence 45678899999999999999999999999997 7899999866 455 478999994
No 99
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.41 E-value=2.4e-07 Score=94.35 Aligned_cols=41 Identities=32% Similarity=0.468 Sum_probs=37.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC-CCCCCc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYGSH 60 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~-~~~GG~ 60 (407)
+.+|||||||||++|+.||..+|+.|.+|+++|++ +.+|+.
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m 43 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM 43 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence 45699999999999999999999999999999998 577764
No 100
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.41 E-value=2.2e-07 Score=93.27 Aligned_cols=40 Identities=28% Similarity=0.378 Sum_probs=37.6
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
+|||||||+|.+|++||..+++.|++|+++|+ +.+||.+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~ 41 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCV 41 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceee
Confidence 59999999999999999999999999999999 58999765
No 101
>PRK07045 putative monooxygenase; Reviewed
Probab=98.40 E-value=2.7e-07 Score=90.93 Aligned_cols=38 Identities=18% Similarity=0.330 Sum_probs=35.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (407)
+..+||+|||||++||++|..|+++|++|+|+|+++..
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 45789999999999999999999999999999999864
No 102
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.40 E-value=2.6e-07 Score=92.87 Aligned_cols=40 Identities=23% Similarity=0.353 Sum_probs=37.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
+|||||||||.+|++||..|++.|++|+++|++ .+||.+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~ 41 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCV 41 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-cccccee
Confidence 599999999999999999999999999999995 6899764
No 103
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.40 E-value=3.1e-07 Score=90.66 Aligned_cols=52 Identities=17% Similarity=0.195 Sum_probs=40.9
Q ss_pred chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-EC
Q 015413 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LD 333 (407)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~ 333 (407)
..+.+.|.+.++..|++++.+++|++|+.+ ++. +.|++++|++++||.|| ++
T Consensus 113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~--~~~-v~v~~~~g~~~~a~~vV~Ad 165 (392)
T PRK08773 113 DLLVDRLWAALHAAGVQLHCPARVVALEQD--ADR-VRLRLDDGRRLEAALAIAAD 165 (392)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEec--CCe-EEEEECCCCEEEeCEEEEec
Confidence 356667777777789999999999999875 444 45777888899999999 44
No 104
>PLN02661 Putative thiazole synthesis
Probab=98.39 E-value=2.7e-07 Score=87.90 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=37.5
Q ss_pred cccEEEECCChhHHHHHHHHhhC-CCeEEEEccCCCCCCccc
Q 015413 22 AFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~-G~~VlvlE~~~~~GG~~~ 62 (407)
++||+|||+|++||+||+.|+++ |++|+|+|++..+||..+
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~ 133 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAW 133 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccccee
Confidence 58999999999999999999986 999999999999988443
No 105
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.39 E-value=2.7e-07 Score=91.53 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=33.7
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (407)
Q Consensus 19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~ 54 (407)
+|..+||+|||||++||++|..|+++|++|+|+|++
T Consensus 1 ~m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 1 MMQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 356789999999999999999999999999999996
No 106
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.39 E-value=2.3e-07 Score=82.60 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=32.4
Q ss_pred EEECCChhHHHHHHHHhhCCCe-EEEEccCCCCCCcccc
Q 015413 26 IVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHFSS 63 (407)
Q Consensus 26 vVIGaGl~GL~aA~~La~~G~~-VlvlE~~~~~GG~~~t 63 (407)
+|||||++||++|+.|.+.|.+ |+|||+++.+||.+..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~ 39 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRR 39 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHC
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEE
Confidence 7999999999999999999999 9999999999999874
No 107
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.38 E-value=3e-07 Score=92.84 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=38.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t 63 (407)
.+|||||||||.+|++||..|++.|++|+++|++. +||.+..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~ 44 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLN 44 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceee
Confidence 46999999999999999999999999999999987 9997643
No 108
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.38 E-value=3.4e-07 Score=92.61 Aligned_cols=42 Identities=21% Similarity=0.307 Sum_probs=38.7
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t 63 (407)
..|||||||||.+|++||.+|++.|++|+++|++ .+||.+..
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~ 44 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLH 44 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEc
Confidence 4799999999999999999999999999999996 88998754
No 109
>PRK06184 hypothetical protein; Provisional
Probab=98.37 E-value=3.8e-07 Score=93.03 Aligned_cols=45 Identities=20% Similarity=0.298 Sum_probs=38.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC--CCccccc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSL 64 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~--GG~~~t~ 64 (407)
|+++||+|||||++||++|..|++.|.+|+|+|+++.+ .++...+
T Consensus 1 ~~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l 47 (502)
T PRK06184 1 YTTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGI 47 (502)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceee
Confidence 45799999999999999999999999999999999776 4455444
No 110
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.37 E-value=3.5e-07 Score=86.47 Aligned_cols=40 Identities=20% Similarity=0.371 Sum_probs=36.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t 63 (407)
|||+|||||++||+||..|++.|++|+|+|+++ .||.+..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~ 40 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTT 40 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceee
Confidence 699999999999999999999999999999987 7886653
No 111
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.37 E-value=4e-07 Score=98.02 Aligned_cols=43 Identities=19% Similarity=0.218 Sum_probs=40.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t 63 (407)
+.+||+|||||.+||+||+.|++.|++|+|+|+++.+||..+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~ 578 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN 578 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence 4589999999999999999999999999999999999998753
No 112
>PRK07236 hypothetical protein; Provisional
Probab=98.37 E-value=4e-07 Score=89.70 Aligned_cols=37 Identities=19% Similarity=0.168 Sum_probs=34.7
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
|...||+|||||++||++|..|+++|++|+|+|+++.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 5678999999999999999999999999999999864
No 113
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.36 E-value=3.5e-07 Score=90.21 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~ 54 (407)
|||||||||++|++||..|+++|++|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 79999999999999999999999999999998
No 114
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.36 E-value=4.1e-07 Score=93.71 Aligned_cols=42 Identities=36% Similarity=0.472 Sum_probs=39.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC--CCCCccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP--FYGSHFS 62 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~--~~GG~~~ 62 (407)
.++||||||+|.+||+||+.++++|.+|+||||.+ .+||.+.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF 46 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence 46899999999999999999999999999999999 8899654
No 115
>PRK12831 putative oxidoreductase; Provisional
Probab=98.36 E-value=5.6e-07 Score=90.62 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=40.5
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
.....||+|||||.+||+||..|++.|++|+|+|+++.+||.+.
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 34568999999999999999999999999999999999999874
No 116
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.35 E-value=3.5e-07 Score=86.61 Aligned_cols=39 Identities=36% Similarity=0.625 Sum_probs=33.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCC-CeEEEEccCCCCCCcc
Q 015413 23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHF 61 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G-~~VlvlE~~~~~GG~~ 61 (407)
||+||||+|.+|+++|.+|+++| ++|+|||+..+.....
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~ 40 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPED 40 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSG
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcccc
Confidence 89999999999999999999998 6999999988766554
No 117
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.35 E-value=4.2e-07 Score=91.14 Aligned_cols=38 Identities=26% Similarity=0.521 Sum_probs=36.4
Q ss_pred cEEEECCChhHHHHHHHHhhCC-CeEEEEccCCCCCCcc
Q 015413 24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHF 61 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G-~~VlvlE~~~~~GG~~ 61 (407)
||||||+|++||+||+.++++| .+|+||||.+..||.+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s 39 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNS 39 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcc
Confidence 8999999999999999999999 9999999999999864
No 118
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.34 E-value=4.5e-07 Score=89.55 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=34.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G 58 (407)
...||+|||||++||++|..|+++|++|+|+|+++.++
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~ 40 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG 40 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccc
Confidence 35799999999999999999999999999999997654
No 119
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.34 E-value=4.5e-07 Score=89.41 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=34.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
.+.|||+|||||++||++|..|+++|++|+|+|++..
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 39 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAP 39 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence 4569999999999999999999999999999999753
No 120
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.34 E-value=5.7e-07 Score=83.16 Aligned_cols=42 Identities=36% Similarity=0.469 Sum_probs=37.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC--CCCcc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF--YGSHF 61 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~--~GG~~ 61 (407)
+.++||||||||++||.||+.||.+|++|++||+... +||.+
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA 46 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence 5579999999999999999999999999999998654 78864
No 121
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.34 E-value=4.7e-07 Score=92.44 Aligned_cols=41 Identities=22% Similarity=0.330 Sum_probs=37.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
.++||||||+| +||+||+.++++|.+|+||||...+||.+.
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~ 46 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTA 46 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCccee
Confidence 37899999999 999999999999999999999999898653
No 122
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.34 E-value=5.5e-07 Score=91.14 Aligned_cols=43 Identities=28% Similarity=0.441 Sum_probs=39.1
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEcc------CCCCCCcccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDP------NPFYGSHFSS 63 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~------~~~~GG~~~t 63 (407)
.+||+||||+|.+|++||.+|++.|++|+|+|+ +..+||.+..
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n 51 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLN 51 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCcccc
Confidence 469999999999999999999999999999998 4678997754
No 123
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.34 E-value=4.2e-07 Score=87.87 Aligned_cols=44 Identities=20% Similarity=0.367 Sum_probs=40.7
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccc
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS 65 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~ 65 (407)
.-+++|||||++|++||..|++.|++|.++|+++.+||+...+.
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~ 167 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLN 167 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhh
Confidence 35799999999999999999999999999999999999987654
No 124
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.33 E-value=5.8e-07 Score=88.37 Aligned_cols=58 Identities=33% Similarity=0.371 Sum_probs=44.9
Q ss_pred eEeecCCc---chHHHHHHHHHHhcC-cEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413 271 LIYPIYGQ---GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (407)
Q Consensus 271 ~~~p~gG~---~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (407)
++.+..|. ..+.++|++.+.+.| ..+..+++|..+..+ . +.++|.+.+|. ++|++||+
T Consensus 145 ~~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~--~-~~~~v~t~~g~-i~a~~vv~ 206 (387)
T COG0665 145 LFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD--G-RVVGVETDGGT-IEADKVVL 206 (387)
T ss_pred EecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec--C-cEEEEEeCCcc-EEeCEEEE
Confidence 45566663 578899999999999 456669999999864 3 56788877776 99999994
No 125
>PRK14694 putative mercuric reductase; Provisional
Probab=98.32 E-value=5.7e-07 Score=90.88 Aligned_cols=43 Identities=19% Similarity=0.290 Sum_probs=39.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t 63 (407)
...|||||||||.+|++||..|++.|++|+++|++ .+||.|..
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n 46 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVN 46 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceec
Confidence 45799999999999999999999999999999986 79997653
No 126
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.32 E-value=5.5e-07 Score=92.82 Aligned_cols=42 Identities=21% Similarity=0.365 Sum_probs=38.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t 63 (407)
..|||||||||.+||+||..|++.|++|+|+|++ .+||.+..
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~ 44 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITI 44 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEe
Confidence 3599999999999999999999999999999995 78997653
No 127
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.32 E-value=5.9e-07 Score=88.80 Aligned_cols=36 Identities=17% Similarity=0.327 Sum_probs=33.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G 58 (407)
+||||||||++|++||..|+++|++|+|+|++...+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~ 36 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA 36 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 699999999999999999999999999999987644
No 128
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.32 E-value=6.4e-07 Score=92.75 Aligned_cols=43 Identities=26% Similarity=0.436 Sum_probs=40.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
..++||||||+|.+||+||+.++++|.+|+||||.+..||.+.
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~ 49 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTA 49 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccc
Confidence 3478999999999999999999999999999999999999765
No 129
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.31 E-value=6.6e-07 Score=87.38 Aligned_cols=34 Identities=29% Similarity=0.460 Sum_probs=32.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
+||+|||||+.||++|+.|+++|++|+|||++..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 6999999999999999999999999999999875
No 130
>PLN02985 squalene monooxygenase
Probab=98.31 E-value=7.8e-07 Score=90.60 Aligned_cols=40 Identities=23% Similarity=0.359 Sum_probs=35.8
Q ss_pred CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 17 ~~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
.....++||||||||++||++|..|+++|++|+|+|+...
T Consensus 38 ~~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 38 ERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred cCcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 3445678999999999999999999999999999999864
No 131
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.31 E-value=5.6e-07 Score=88.40 Aligned_cols=35 Identities=20% Similarity=0.455 Sum_probs=33.5
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G 58 (407)
||+|||||++||++|..|+++|++|+|+|++...+
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~ 35 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEA 35 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccc
Confidence 89999999999999999999999999999998765
No 132
>PRK13748 putative mercuric reductase; Provisional
Probab=98.30 E-value=5.8e-07 Score=93.00 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=38.8
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t 63 (407)
..|||||||||.+|++||..|++.|++|+|+|++ .+||.+..
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n 138 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVN 138 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccc
Confidence 4699999999999999999999999999999997 89997653
No 133
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.30 E-value=5.7e-07 Score=88.73 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=33.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhC---CCeEEEEccC
Q 015413 20 PTAFDLIVIGTGLPESVISAAASAS---GKSVLHLDPN 54 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~---G~~VlvlE~~ 54 (407)
|.++||+|||||++||++|+.|+|+ |.+|+|+|++
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 4679999999999999999999998 9999999996
No 134
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.30 E-value=6.6e-07 Score=88.10 Aligned_cols=37 Identities=32% Similarity=0.469 Sum_probs=34.7
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G 58 (407)
.+||+|||||++||++|+.|++.|++|+|+|+++...
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 41 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPR 41 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCcc
Confidence 5899999999999999999999999999999998754
No 135
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.29 E-value=6.7e-07 Score=88.11 Aligned_cols=37 Identities=30% Similarity=0.432 Sum_probs=34.9
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (407)
||||||||++||++|+.|+++|++|+|||+++..||.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~ 37 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN 37 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCC
Confidence 8999999999999999999999999999999887764
No 136
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.29 E-value=6.1e-07 Score=88.96 Aligned_cols=35 Identities=37% Similarity=0.621 Sum_probs=33.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
++||+|||||++||++|..|+++|++|+|+|+++.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPL 36 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCc
Confidence 48999999999999999999999999999999874
No 137
>PRK06834 hypothetical protein; Provisional
Probab=98.28 E-value=8.1e-07 Score=90.08 Aligned_cols=46 Identities=20% Similarity=0.321 Sum_probs=38.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC---CCCcccccc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF---YGSHFSSLS 65 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~---~GG~~~t~~ 65 (407)
|+++||||||||++||++|..|+++|.+|+|+|+++. .|.|...+.
T Consensus 1 ~~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~ 49 (488)
T PRK06834 1 MTEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLH 49 (488)
T ss_pred CCcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeEC
Confidence 4679999999999999999999999999999999875 344544433
No 138
>PLN02697 lycopene epsilon cyclase
Probab=98.28 E-value=1.1e-06 Score=89.17 Aligned_cols=48 Identities=27% Similarity=0.468 Sum_probs=39.6
Q ss_pred CCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413 11 PVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (407)
Q Consensus 11 ~~~~~~~~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (407)
+.|+++ .....|||||||||++||++|+.|+++|++|+++|+....+.
T Consensus 98 ~~~~~~-~~~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~ 145 (529)
T PLN02697 98 KLPPIS-IGDGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN 145 (529)
T ss_pred cCCCCC-cccCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCC
Confidence 445555 345579999999999999999999999999999998755443
No 139
>PRK14727 putative mercuric reductase; Provisional
Probab=98.28 E-value=7.4e-07 Score=90.30 Aligned_cols=43 Identities=16% Similarity=0.270 Sum_probs=40.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t 63 (407)
..||+||||+|.+|++||..|++.|++|+++|+++.+||.|..
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n 57 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN 57 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence 3589999999999999999999999999999999999998764
No 140
>PRK06185 hypothetical protein; Provisional
Probab=98.27 E-value=8e-07 Score=88.16 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=33.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
.++||+|||||++||++|..|+++|++|+|+|+++.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 469999999999999999999999999999999864
No 141
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.27 E-value=8e-07 Score=88.02 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=41.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~ 64 (407)
+..-+|+|||||.+||++|+.|.+.|++|+|+||.+.+||-+.--
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~ 48 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT 48 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence 335699999999999999999999999999999999999988754
No 142
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.27 E-value=1.4e-05 Score=80.31 Aligned_cols=53 Identities=23% Similarity=0.344 Sum_probs=41.7
Q ss_pred chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-EC
Q 015413 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LD 333 (407)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~ 333 (407)
+.+-+-|.+.+.+.|++++.++ |..+..+ ++|.+++|++.+|++++||.|| |+
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~-~~g~i~~v~~~~g~~i~ad~~IDAS 207 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELD-EDGRITAVRLDDGRTIEADFFIDAS 207 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE--TTSEEEEEEETTSEEEEESEEEE-S
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEc-CCCCEEEEEECCCCEEEEeEEEECC
Confidence 4566778888899999998875 8888877 4788889999999999999999 64
No 143
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.27 E-value=8.3e-07 Score=89.61 Aligned_cols=39 Identities=28% Similarity=0.526 Sum_probs=36.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
|||||||||.+|++||..|++.|++|+++|+.. +||.+.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~ 39 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCV 39 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCee
Confidence 799999999999999999999999999999976 788754
No 144
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=9.3e-07 Score=83.57 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=37.7
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS 65 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~ 65 (407)
|..|||||||||.+||+||.+++|+|.++.|++....+||......
T Consensus 1 ~~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~ 46 (305)
T COG0492 1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTT 46 (305)
T ss_pred CceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccce
Confidence 4579999999999999999999999999555555577887665543
No 145
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.26 E-value=8e-07 Score=87.69 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=33.2
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
.+||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 37999999999999999999999999999999984
No 146
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.26 E-value=9.2e-07 Score=91.66 Aligned_cols=41 Identities=27% Similarity=0.307 Sum_probs=37.2
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (407)
|...||||||+|++||+||+.++++|.+|+||||....||.
T Consensus 1 ~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~ 41 (589)
T PRK08641 1 MAKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSH 41 (589)
T ss_pred CCCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 34579999999999999999999999999999999887764
No 147
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.26 E-value=1.3e-06 Score=93.84 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=40.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t 63 (407)
.+..+|+|||||.+||+||..|++.|++|+|+|+++.+||..+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN 580 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence 34579999999999999999999999999999999999998754
No 148
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.25 E-value=8.7e-07 Score=91.70 Aligned_cols=41 Identities=22% Similarity=0.402 Sum_probs=38.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (407)
.++||||||+|.+||+||+.++++|.+|+||||.+..||.+
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t 50 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGST 50 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchH
Confidence 36899999999999999999999999999999999999853
No 149
>PRK06847 hypothetical protein; Provisional
Probab=98.25 E-value=1e-06 Score=86.36 Aligned_cols=37 Identities=16% Similarity=0.309 Sum_probs=34.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (407)
+..||+|||||++||++|..|++.|.+|+|+|+++..
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~ 39 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEW 39 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 4579999999999999999999999999999998764
No 150
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.25 E-value=9.9e-07 Score=90.88 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=38.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (407)
.++||||||+|.+||+||..|+++|.+|+|||++..+||.+
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~ 45 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST 45 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 36899999999999999999999999999999999999965
No 151
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.25 E-value=1.2e-06 Score=92.01 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=39.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
.+..+|+|||+|.+||+||..|++.|++|+|+|+++.+||...
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~ 367 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT 367 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee
Confidence 3467999999999999999999999999999999999999764
No 152
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.24 E-value=1.1e-06 Score=91.71 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=37.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (407)
...|||||||||+.|+.+|+.|++.|++|+|||+++.-+|.
T Consensus 69 ~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~Gt 109 (627)
T PLN02464 69 AEPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSGT 109 (627)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCCc
Confidence 34599999999999999999999999999999999876663
No 153
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.24 E-value=1.5e-06 Score=87.23 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=40.3
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
.++.+||+|||+|.+||+||..|++.|++|+|+|+++.+||.+.
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 44568999999999999999999999999999999999999754
No 154
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.24 E-value=1.1e-06 Score=95.29 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=39.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
...+|+|||+|.+||+||..|+++|++|+|+|+++++||..+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 357899999999999999999999999999999999999865
No 155
>PTZ00367 squalene epoxidase; Provisional
Probab=98.24 E-value=1.1e-06 Score=90.18 Aligned_cols=40 Identities=28% Similarity=0.534 Sum_probs=35.4
Q ss_pred CCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 16 ~~~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
|.....++||||||||++|+++|..|+++|++|+|+|++.
T Consensus 27 ~~~~~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 27 PARTNYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccccccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 3334457999999999999999999999999999999975
No 156
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.24 E-value=1.1e-06 Score=87.40 Aligned_cols=44 Identities=23% Similarity=0.324 Sum_probs=41.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t 63 (407)
+.+||+||||+|.+|.+||.++++.|++|+++|+...+||-|..
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln 45 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLN 45 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEe
Confidence 45799999999999999999999999999999999999997754
No 157
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.24 E-value=9.5e-07 Score=86.64 Aligned_cols=34 Identities=12% Similarity=0.292 Sum_probs=32.2
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
++||+|||||++||++|..|+++|++|+|+|+++
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 3799999999999999999999999999999975
No 158
>PRK07190 hypothetical protein; Provisional
Probab=98.23 E-value=1.1e-06 Score=88.91 Aligned_cols=44 Identities=14% Similarity=0.147 Sum_probs=38.2
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC--CCcccc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSS 63 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~--GG~~~t 63 (407)
+..+||+|||||++||++|+.|+++|.+|+|||+++.+ +|++..
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~ 48 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADA 48 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceE
Confidence 34689999999999999999999999999999999875 556543
No 159
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.23 E-value=9.9e-07 Score=86.66 Aligned_cols=53 Identities=21% Similarity=0.246 Sum_probs=40.1
Q ss_pred chHHHHHHHHHHh-cCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-ECC
Q 015413 279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP 334 (407)
Q Consensus 279 ~~l~~al~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~p 334 (407)
..+.+.|.+.+.. .|++++++++|++|..+ ++. +.|++++|++++||.|| ++.
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~--~~~-~~v~~~~g~~~~ad~vV~AdG 159 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIRN--QDY-VRVTLDNGQQLRAKLLIAADG 159 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEc--CCe-EEEEECCCCEEEeeEEEEecC
Confidence 3566777776666 48999999999999875 343 46777788889999988 554
No 160
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.23 E-value=1.3e-06 Score=90.61 Aligned_cols=44 Identities=25% Similarity=0.257 Sum_probs=38.8
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (407)
Q Consensus 18 ~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (407)
+...++||||||+|.+||+||+.++++|.+|+||||....||.+
T Consensus 8 ~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t 51 (591)
T PRK07057 8 LPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHT 51 (591)
T ss_pred cccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCc
Confidence 44456899999999999999999999999999999988777643
No 161
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.22 E-value=1.1e-06 Score=86.72 Aligned_cols=54 Identities=20% Similarity=0.207 Sum_probs=41.2
Q ss_pred cchHHHHHHHHHHhcC-cEEEeCCceeEEEEecCCCcEEEEEeC-CCcEEEcCEEE-ECC
Q 015413 278 QGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLA-SGQDILSHKLV-LDP 334 (407)
Q Consensus 278 ~~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~~i~Ad~VI-~~p 334 (407)
...|-++|.+.+...+ .+++.++.|+.+..+ ++.+ .|+++ +|++++||.|| ++-
T Consensus 103 ~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~--~~~v-~v~l~~dG~~~~a~llVgADG 159 (387)
T COG0654 103 RSDLLNALLEAARALPNVTLRFGAEVEAVEQD--GDGV-TVTLSFDGETLDADLLVGADG 159 (387)
T ss_pred hHHHHHHHHHHHhhCCCcEEEcCceEEEEEEc--CCce-EEEEcCCCcEEecCEEEECCC
Confidence 4456666767776666 799999999999986 4454 47777 99999999999 553
No 162
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.21 E-value=1.2e-06 Score=89.05 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (407)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (407)
++.+.+.+..+..|.++++++.|++|... ++. ..|++.+|+++.+|.||+
T Consensus 223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~--~~~-~~v~~~~g~~i~~D~vl~ 272 (499)
T PTZ00052 223 QCSEKVVEYMKEQGTLFLEGVVPINIEKM--DDK-IKVLFSDGTTELFDTVLY 272 (499)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeEEEEEEc--CCe-EEEEECCCCEEEcCEEEE
Confidence 46677778888899999999999999764 333 356677888999999984
No 163
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.21 E-value=1.8e-06 Score=90.43 Aligned_cols=47 Identities=21% Similarity=0.293 Sum_probs=41.6
Q ss_pred CCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 16 ~~~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
++..+...+|+|||+|.+||+||..|++.|++|+|+|+++++||.++
T Consensus 304 ~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~ 350 (639)
T PRK12809 304 SKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT 350 (639)
T ss_pred CcccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence 33334567899999999999999999999999999999999999865
No 164
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.21 E-value=1.5e-06 Score=90.03 Aligned_cols=41 Identities=32% Similarity=0.273 Sum_probs=37.7
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (407)
..++||||||+|.+||+||..++++|.+|+||||....||.
T Consensus 5 ~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~ 45 (588)
T PRK08958 5 VREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSH 45 (588)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 34689999999999999999999999999999999887774
No 165
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.21 E-value=1.5e-06 Score=90.78 Aligned_cols=39 Identities=23% Similarity=0.286 Sum_probs=36.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (407)
.++||||||+|++||+||..++++|.+|+|+||....||
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g 45 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA 45 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence 468999999999999999999999999999999987655
No 166
>PRK12839 hypothetical protein; Provisional
Probab=98.21 E-value=1.6e-06 Score=89.53 Aligned_cols=44 Identities=23% Similarity=0.372 Sum_probs=40.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t 63 (407)
..++||||||+|.+||+||+.|+++|.+|+|||++..+||.+..
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~ 49 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAW 49 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccc
Confidence 44799999999999999999999999999999999999997653
No 167
>PRK11445 putative oxidoreductase; Provisional
Probab=98.20 E-value=1.3e-06 Score=85.04 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=32.9
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (407)
+|||+|||||++||++|+.|+++ ++|+|+|+++..
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~ 35 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQC 35 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence 48999999999999999999999 999999999864
No 168
>PRK06753 hypothetical protein; Provisional
Probab=98.20 E-value=1.3e-06 Score=85.45 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=33.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G 58 (407)
||+|||||++||++|..|+++|++|+|+|+++...
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~ 36 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVK 36 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccc
Confidence 79999999999999999999999999999998754
No 169
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.20 E-value=1.3e-06 Score=86.21 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=33.3
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
++||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 47999999999999999999999999999999984
No 170
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.20 E-value=1.7e-06 Score=89.25 Aligned_cols=42 Identities=26% Similarity=0.552 Sum_probs=38.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
.++||||||+|.+|++||+.++++|.+|+||||...+||.+.
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~ 47 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTA 47 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcccc
Confidence 479999999999999999999999999999999999998543
No 171
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.19 E-value=1.5e-06 Score=81.79 Aligned_cols=36 Identities=25% Similarity=0.490 Sum_probs=33.4
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (407)
Q Consensus 19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~ 54 (407)
....+||||||||.+|.+.|+.|+|.|++|+|+||.
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 345699999999999999999999999999999996
No 172
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.19 E-value=1.9e-06 Score=88.44 Aligned_cols=40 Identities=25% Similarity=0.414 Sum_probs=37.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (407)
.++||||||+|.+||+||..++++|.+|+||||....||.
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~ 54 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGS 54 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCc
Confidence 4689999999999999999999999999999999987774
No 173
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.19 E-value=1.4e-06 Score=86.34 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=32.7
Q ss_pred cccEEEECCChhHHHHHHHHhhCC--CeEEEEccCCC
Q 015413 22 AFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPF 56 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G--~~VlvlE~~~~ 56 (407)
+|||+|||||++||++|..|+++| ++|+|+|+++.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 489999999999999999999996 99999999874
No 174
>PRK06126 hypothetical protein; Provisional
Probab=98.19 E-value=1.6e-06 Score=89.33 Aligned_cols=37 Identities=8% Similarity=0.176 Sum_probs=34.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
+.++||+|||||++||++|..|++.|++|+|+|+++.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 4468999999999999999999999999999999874
No 175
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.18 E-value=1.7e-06 Score=89.30 Aligned_cols=45 Identities=20% Similarity=0.332 Sum_probs=38.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC--CCcccccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSLS 65 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~--GG~~~t~~ 65 (407)
.++||+|||||++||++|..|++.|.+|+|+|+++.+ +++...+.
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~ 68 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFA 68 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEc
Confidence 3589999999999999999999999999999999865 55554433
No 176
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.18 E-value=1.4e-06 Score=87.18 Aligned_cols=34 Identities=29% Similarity=0.416 Sum_probs=31.9
Q ss_pred ccEEEECCChhHHHHHHHHhh----CCCeEEEEccCCC
Q 015413 23 FDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPF 56 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~----~G~~VlvlE~~~~ 56 (407)
|||+|||||++||++|+.|++ +|++|+|+|+++.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~ 38 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDN 38 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCC
Confidence 799999999999999999999 8999999999654
No 177
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.18 E-value=2e-06 Score=93.98 Aligned_cols=42 Identities=14% Similarity=0.126 Sum_probs=39.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
+..||+|||||.+||+||..|++.|++|+|+|+.+.+||..+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~ 470 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ 470 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence 457999999999999999999999999999999999999765
No 178
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.18 E-value=1.8e-06 Score=89.07 Aligned_cols=41 Identities=24% Similarity=0.275 Sum_probs=37.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (407)
.++||||||+|.+||+||+.++++|.+|+|+||....||.+
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s 44 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHS 44 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcc
Confidence 45899999999999999999999999999999998777743
No 179
>PLN02507 glutathione reductase
Probab=98.17 E-value=1.8e-06 Score=87.74 Aligned_cols=44 Identities=23% Similarity=0.138 Sum_probs=39.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEcc---------CCCCCCcccc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDP---------NPFYGSHFSS 63 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~---------~~~~GG~~~t 63 (407)
+.+|||||||+|.+|+.||.++++.|++|+++|+ .+.+||.|..
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n 75 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVI 75 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeec
Confidence 4469999999999999999999999999999996 3679998744
No 180
>PRK08244 hypothetical protein; Provisional
Probab=98.17 E-value=1.7e-06 Score=88.02 Aligned_cols=43 Identities=16% Similarity=0.222 Sum_probs=37.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC--CCccccc
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSL 64 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~--GG~~~t~ 64 (407)
++||+|||||++||++|..|+++|.+|+|+|+++.. .|+..++
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l 46 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTL 46 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEe
Confidence 389999999999999999999999999999998754 4555443
No 181
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.16 E-value=1.9e-06 Score=88.59 Aligned_cols=43 Identities=23% Similarity=0.304 Sum_probs=37.5
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (407)
Q Consensus 18 ~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (407)
....++||||||+|++||+||+.++ +|.+|+||||.+..||.+
T Consensus 5 ~~~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~s 47 (553)
T PRK07395 5 ILPSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSAS 47 (553)
T ss_pred cccccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCch
Confidence 3455799999999999999999986 599999999999888743
No 182
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.16 E-value=2.7e-06 Score=85.97 Aligned_cols=43 Identities=16% Similarity=0.235 Sum_probs=39.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
...+||+|||+|.+||+||..|++.|++|+|+|+.+.+||...
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 3457999999999999999999999999999999999999754
No 183
>PRK07538 hypothetical protein; Provisional
Probab=98.15 E-value=1.9e-06 Score=85.71 Aligned_cols=35 Identities=14% Similarity=0.356 Sum_probs=32.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (407)
.||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 38999999999999999999999999999998754
No 184
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.15 E-value=2.3e-06 Score=89.14 Aligned_cols=40 Identities=18% Similarity=0.137 Sum_probs=36.9
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (407)
++||||||+|.+||.||+.++++|.+|+|+||....||.+
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t 68 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHT 68 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCc
Confidence 6899999999999999999999999999999998877743
No 185
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.15 E-value=2.1e-06 Score=89.11 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=36.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (407)
.++||||||+|++||+||+.++++|.+|+||||....||.
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~ 50 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSH 50 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcc
Confidence 4689999999999999999999999999999998776664
No 186
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.15 E-value=2.3e-06 Score=83.75 Aligned_cols=41 Identities=22% Similarity=0.356 Sum_probs=36.8
Q ss_pred cEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCC-ccccc
Q 015413 24 DLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGS-HFSSL 64 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG-~~~t~ 64 (407)
||||||||++||++|+.|+++ |++|+|+|+++..|| +++++
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~ 44 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSF 44 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCccccee
Confidence 899999999999999999987 999999999998887 44443
No 187
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.14 E-value=2.1e-06 Score=85.78 Aligned_cols=39 Identities=10% Similarity=0.220 Sum_probs=35.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (407)
.++||||||+|.+||+||..++ +|.+|+||||.+..||.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~ 41 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN 41 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence 3689999999999999999975 79999999999998875
No 188
>PLN02815 L-aspartate oxidase
Probab=98.14 E-value=2.8e-06 Score=87.81 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=40.1
Q ss_pred CCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413 12 VPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (407)
Q Consensus 12 ~~~~~~~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (407)
++|+-.-...++||||||+|++||+||+.++++| +|+||||....||.
T Consensus 19 ~~~~~~~~~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~ 66 (594)
T PLN02815 19 ASRLDDESTKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESN 66 (594)
T ss_pred ccccccCcccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCc
Confidence 3444333344689999999999999999999999 89999999998884
No 189
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.14 E-value=2.2e-06 Score=86.68 Aligned_cols=52 Identities=12% Similarity=0.180 Sum_probs=41.7
Q ss_pred chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (407)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (407)
.++.+.+.+..+..|.++++++.|++|..+ ++....|++.+|+++++|.||+
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~--~~~~~~v~~~~g~~i~~D~vl~ 282 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLN--ADGSKHVTFESGKTLDVDVVMM 282 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEc--CCceEEEEEcCCCEEEcCEEEE
Confidence 567788888888899999999999999864 2333456667888999999984
No 190
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.14 E-value=2.5e-06 Score=93.59 Aligned_cols=43 Identities=28% Similarity=0.441 Sum_probs=40.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t 63 (407)
..+||+|||||.+||+||..|+++|++|+|+|+++++||....
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 4689999999999999999999999999999999999998764
No 191
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.13 E-value=2e-06 Score=86.86 Aligned_cols=61 Identities=16% Similarity=0.116 Sum_probs=44.9
Q ss_pred ceEeecCC---cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEe---CCC--cEEEcCEEEE
Q 015413 270 ALIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASG--QDILSHKLVL 332 (407)
Q Consensus 270 ~~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G--~~i~Ad~VI~ 332 (407)
+.+.|.+| ...+.++|.+.++..|++|+++++|++|..+ +++. +.|++ .+| .+++||+||+
T Consensus 166 Al~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~-~~~~-v~v~~~~~~~g~~~~i~A~~VV~ 234 (483)
T TIGR01320 166 ANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQ-SDGS-WTVTVKNTRTGGKRTLNTRFVFV 234 (483)
T ss_pred EEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCCe-EEEEEeeccCCceEEEECCEEEE
Confidence 35567676 3788999999998999999999999999875 1333 33432 234 3689999984
No 192
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.13 E-value=2.6e-06 Score=87.72 Aligned_cols=39 Identities=21% Similarity=0.286 Sum_probs=36.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G 58 (407)
+.++||+|||||++||++|..|++.|++|+|+|++..++
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~ 46 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLY 46 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 456899999999999999999999999999999998654
No 193
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.13 E-value=3.1e-06 Score=87.72 Aligned_cols=44 Identities=23% Similarity=0.414 Sum_probs=40.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t 63 (407)
..++||||||+|.+|++||..++++|++|+|||+++.+||.+..
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~ 53 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAW 53 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCccccc
Confidence 44799999999999999999999999999999999999997653
No 194
>PRK02106 choline dehydrogenase; Validated
Probab=98.13 E-value=2.6e-06 Score=88.12 Aligned_cols=37 Identities=30% Similarity=0.430 Sum_probs=34.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhh-CCCeEEEEccCCC
Q 015413 20 PTAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPF 56 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~-~G~~VlvlE~~~~ 56 (407)
..+||+||||+|.+|+++|.+|++ +|++|+|||+...
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 456999999999999999999999 8999999999864
No 195
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.12 E-value=2.5e-06 Score=88.92 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=36.9
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (407)
++||||||+|++||.||+.++++|.+|+|+||....||.+
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s 89 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHT 89 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCch
Confidence 5899999999999999999999999999999998877743
No 196
>PRK07588 hypothetical protein; Provisional
Probab=98.12 E-value=2.5e-06 Score=84.19 Aligned_cols=34 Identities=12% Similarity=0.252 Sum_probs=32.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
.||+|||||++||++|..|+++|++|+|+|+++.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 3899999999999999999999999999999864
No 197
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.12 E-value=2.3e-06 Score=88.62 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=36.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCC--CeEEEEccCCCCCCc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSH 60 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G--~~VlvlE~~~~~GG~ 60 (407)
|.++||||||+|.+||+||+.++++| .+|+||||....||.
T Consensus 1 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~ 43 (575)
T PRK05945 1 MLEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSH 43 (575)
T ss_pred CCcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchh
Confidence 35689999999999999999999874 899999999877764
No 198
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.11 E-value=3e-06 Score=88.60 Aligned_cols=40 Identities=28% Similarity=0.298 Sum_probs=36.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (407)
.++||||||+|.+||+||+.++++|.+|+|+|++..+|+.
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g 73 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRA 73 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcc
Confidence 3689999999999999999999999999999998888643
No 199
>PRK10262 thioredoxin reductase; Provisional
Probab=98.11 E-value=3e-06 Score=81.26 Aligned_cols=42 Identities=12% Similarity=0.198 Sum_probs=37.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t 63 (407)
..+||+|||||.+||.||..|++.|++|+++|+. ..||.+..
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~ 46 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT 46 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence 4689999999999999999999999999999965 67887643
No 200
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.11 E-value=4.2e-06 Score=84.46 Aligned_cols=43 Identities=26% Similarity=0.393 Sum_probs=39.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
.+..+|+|||+|.+||+||..|++.|++|+++|+++.+||..+
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~ 181 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT 181 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 3557999999999999999999999999999999999999765
No 201
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.10 E-value=2.9e-06 Score=86.49 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=35.3
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t 63 (407)
.|+|||||.+||+||..|.+.|.+|+++|+++.+||.++.
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~ 42 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRY 42 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCH
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCee
Confidence 6999999999999999999999999999999999999863
No 202
>PLN02546 glutathione reductase
Probab=98.10 E-value=3.2e-06 Score=86.80 Aligned_cols=43 Identities=28% Similarity=0.180 Sum_probs=37.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccC---------CCCCCcccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPN---------PFYGSHFSS 63 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~---------~~~GG~~~t 63 (407)
.+|||||||+|.+|..||..+++.|++|+++|++ ..+||.|-.
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n 129 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVL 129 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccC
Confidence 3599999999999999999999999999999962 568886654
No 203
>PRK05868 hypothetical protein; Validated
Probab=98.10 E-value=3.1e-06 Score=82.90 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=32.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (407)
.||+|||||++||++|..|+++|++|+|+|+++..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 48999999999999999999999999999998764
No 204
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.09 E-value=3.3e-06 Score=88.50 Aligned_cols=40 Identities=33% Similarity=0.393 Sum_probs=36.8
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (407)
.++||||||+|++||.||..++++|.+|+|||+....||.
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s~ 43 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRSH 43 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCcc
Confidence 4689999999999999999999999999999999887663
No 205
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.09 E-value=4.6e-06 Score=89.17 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=39.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
...||+|||||.+||+||..|++.|++|+|+|+++.+||...
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 457999999999999999999999999999999999999865
No 206
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.08 E-value=3.5e-06 Score=82.63 Aligned_cols=34 Identities=32% Similarity=0.553 Sum_probs=32.6
Q ss_pred cEEEECCChhHHHHHHHH--hhCCCeEEEEccCCCC
Q 015413 24 DLIVIGTGLPESVISAAA--SASGKSVLHLDPNPFY 57 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~L--a~~G~~VlvlE~~~~~ 57 (407)
||||||||++||++|+.| ++.|++|+|||++...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 899999999999999999 8899999999998887
No 207
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.08 E-value=4e-06 Score=80.17 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=37.7
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC--CCcccccchhh
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSLSIAD 68 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~--GG~~~t~~~~~ 68 (407)
+-+|||||||++||++|..|+|+|++|+|||++.-+ +|+.-+.-+++
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng 50 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNG 50 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhH
Confidence 358999999999999999999999999999998765 44443333343
No 208
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.08 E-value=4e-06 Score=93.28 Aligned_cols=42 Identities=24% Similarity=0.383 Sum_probs=39.2
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (407)
+.++||||||+|.+||+||+..+++|.+|+||||....||.+
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s 448 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNS 448 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCch
Confidence 346999999999999999999999999999999999999975
No 209
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.07 E-value=3.7e-06 Score=86.08 Aligned_cols=41 Identities=17% Similarity=0.312 Sum_probs=37.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
...|||+|||||.+||+||.+|++.|++|+|+|. ++||.+.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~--~~GG~~~ 249 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE--RFGGQVL 249 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCeee
Confidence 3469999999999999999999999999999986 4999875
No 210
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.07 E-value=5.7e-06 Score=85.68 Aligned_cols=42 Identities=29% Similarity=0.470 Sum_probs=39.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
.++||||||+|.+|++||..++++|++|+|||+++..||.+.
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~ 56 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTA 56 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc
Confidence 368999999999999999999999999999999999999765
No 211
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.07 E-value=3.8e-06 Score=82.20 Aligned_cols=36 Identities=25% Similarity=0.232 Sum_probs=33.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G 58 (407)
.||+|||||++||.||..|++.|++|+|+|+++...
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKK 38 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccC
Confidence 489999999999999999999999999999877654
No 212
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.06 E-value=4.8e-06 Score=87.39 Aligned_cols=42 Identities=19% Similarity=0.228 Sum_probs=39.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
...+|+|||+|.+||+||..|++.|++|+|+|+++++||.+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 357999999999999999999999999999999999999864
No 213
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.06 E-value=4.6e-06 Score=84.03 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=38.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
...+|+|||||.+||+||..|++.|++|+|+|+++++||...
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence 357999999999999999999999999999999999999754
No 214
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.06 E-value=3.9e-06 Score=86.92 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=35.5
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (407)
||||||+|++||+||+.++++|.+|+||||....||.+
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s 38 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHT 38 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcc
Confidence 89999999999999999999999999999998877744
No 215
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.06 E-value=4.1e-06 Score=86.81 Aligned_cols=41 Identities=24% Similarity=0.347 Sum_probs=37.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhCC---CeEEEEccCCCCCCcc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASG---KSVLHLDPNPFYGSHF 61 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G---~~VlvlE~~~~~GG~~ 61 (407)
.++||||||+|.+||+||..++++| .+|+|+||....||.+
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s 47 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHS 47 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCc
Confidence 3589999999999999999999998 8999999999877743
No 216
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.05 E-value=5.4e-06 Score=83.34 Aligned_cols=42 Identities=17% Similarity=0.137 Sum_probs=38.9
Q ss_pred cccEEEECCChhHHHHHHHHhh--CCCeEEEEccCCCCCCcccc
Q 015413 22 AFDLIVIGTGLPESVISAAASA--SGKSVLHLDPNPFYGSHFSS 63 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~--~G~~VlvlE~~~~~GG~~~t 63 (407)
..+|+|||||.+||.||..|++ .|++|+|+|+.+.+||.++.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence 4689999999999999999987 79999999999999998874
No 217
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.05 E-value=4.5e-06 Score=84.79 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=37.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (407)
|||||||+|.+|+++|+.|+++|++|+++|++...||.+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~ 39 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK 39 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence 699999999999999999999999999999999999755
No 218
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.04 E-value=4.3e-06 Score=82.25 Aligned_cols=37 Identities=24% Similarity=0.248 Sum_probs=34.4
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (407)
||+|||||++|+.||..|++.|++|+|+|+++..|-.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p 38 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTP 38 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCc
Confidence 7999999999999999999999999999998887653
No 219
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.03 E-value=5.1e-06 Score=84.94 Aligned_cols=41 Identities=17% Similarity=0.302 Sum_probs=37.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
...|||+|||||.+||+||..|++.|++|+|+|. ++||.+.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~ 250 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVK 250 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccc
Confidence 4469999999999999999999999999999985 6999765
No 220
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.03 E-value=5e-06 Score=83.84 Aligned_cols=43 Identities=9% Similarity=0.111 Sum_probs=37.7
Q ss_pred CCcccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCccc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~~ 62 (407)
...+||||||||++|+++|+.|++. |++|+|||+.+.+|-..+
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS 48 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESS 48 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcC
Confidence 3468999999999999999999999 999999999778775443
No 221
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.03 E-value=4.7e-06 Score=82.54 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=32.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (407)
-+|+|||||++||++|..|+++|++|+|+|+++.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 57999999999999999999999999999998754
No 222
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.03 E-value=5e-06 Score=84.48 Aligned_cols=39 Identities=26% Similarity=0.423 Sum_probs=35.8
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (407)
++||||||+|++||.||..++++|. |+||||.+..||.+
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s 40 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNS 40 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcc
Confidence 4799999999999999999999998 99999998888743
No 223
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.03 E-value=6.5e-06 Score=81.98 Aligned_cols=52 Identities=21% Similarity=0.241 Sum_probs=44.5
Q ss_pred CCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413 12 VPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (407)
Q Consensus 12 ~~~~~~~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t 63 (407)
+|..++-..+...|.|||+|.+||+||..|+++|++|+|+|+.+..||+...
T Consensus 113 i~~~~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y 164 (457)
T COG0493 113 IPGELPGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY 164 (457)
T ss_pred CCCCCCCCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence 3443444445579999999999999999999999999999999999999874
No 224
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.03 E-value=5e-06 Score=84.84 Aligned_cols=40 Identities=18% Similarity=0.294 Sum_probs=36.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (407)
.++||||||+|.+||.||..+++ |.+|+|+||....||.+
T Consensus 2 ~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s 41 (510)
T PRK08071 2 PSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNS 41 (510)
T ss_pred CccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCc
Confidence 36899999999999999999976 99999999999887753
No 225
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.01 E-value=4.5e-06 Score=80.88 Aligned_cols=44 Identities=30% Similarity=0.357 Sum_probs=33.6
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEE-ccCCCCCCcccccchh
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHL-DPNPFYGSHFSSLSIA 67 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~Vlvl-E~~~~~GG~~~t~~~~ 67 (407)
||||||||++|+.||+.+||.|.+|+++ ++.+.+|...-+-.+.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsig 45 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIG 45 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhc
Confidence 8999999999999999999999999999 7888888765443333
No 226
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.01 E-value=5.5e-06 Score=86.55 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=37.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhh-CCCeEEEEccCCCC--CCcccc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFY--GSHFSS 63 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~-~G~~VlvlE~~~~~--GG~~~t 63 (407)
++++||+|||||++||++|+.|++ .|.+|+|+|+++.. .|++..
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~g 76 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADG 76 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeE
Confidence 457999999999999999999999 59999999998643 455543
No 227
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.01 E-value=6.9e-06 Score=86.33 Aligned_cols=56 Identities=18% Similarity=0.184 Sum_probs=48.1
Q ss_pred CCCCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413 7 ESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (407)
Q Consensus 7 ~~~~~~~~~~~~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t 63 (407)
|.-|-+|+-|. ..+-..|.|||+|.+||+||..|-|+|+.|+|+|+.||+||....
T Consensus 1771 ~egwm~p~pp~-~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y 1826 (2142)
T KOG0399|consen 1771 EEGWMKPCPPA-FRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY 1826 (2142)
T ss_pred HhcCCccCCcc-cccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee
Confidence 34577777555 456789999999999999999999999999999999999998753
No 228
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.00 E-value=5.9e-06 Score=86.11 Aligned_cols=41 Identities=20% Similarity=0.311 Sum_probs=37.5
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccC-CCCCCccc
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYGSHFS 62 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~-~~~GG~~~ 62 (407)
+|||||||+|.+|..||..+++.|++|+++|+. +.+||.|-
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCv 157 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCV 157 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccccee
Confidence 689999999999999999999999999999974 57999664
No 229
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.00 E-value=6.7e-06 Score=85.26 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=33.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
.+..+|+|||||++||++|..|+|+|++|+|+|++.
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 345899999999999999999999999999999975
No 230
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.99 E-value=1e-05 Score=82.10 Aligned_cols=42 Identities=17% Similarity=0.259 Sum_probs=39.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
...+|+|||+|++||+||..|++.|++|+|+|+.+++||...
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~ 183 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM 183 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 346999999999999999999999999999999999999764
No 231
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.99 E-value=6.5e-06 Score=81.91 Aligned_cols=35 Identities=17% Similarity=0.409 Sum_probs=32.4
Q ss_pred cEEEECCChhHHHHHHHHhhCC-CeEEEEccCCCCC
Q 015413 24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYG 58 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G-~~VlvlE~~~~~G 58 (407)
+|+|||||++||++|..|+++| .+|+|+|+++.++
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~ 37 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG 37 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCC
Confidence 6999999999999999999998 5999999998765
No 232
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.99 E-value=6.4e-06 Score=85.71 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=35.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCC
Q 015413 21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGS 59 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG 59 (407)
.++||||||+|.+||+||+.++++ |.+|+||||....|+
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s 50 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRS 50 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCC
Confidence 358999999999999999999998 999999999987544
No 233
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.98 E-value=6.9e-06 Score=82.91 Aligned_cols=50 Identities=18% Similarity=0.199 Sum_probs=40.2
Q ss_pred chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (407)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (407)
..+.+.|.+.+...|++++.+ .|+.+..+ ++++++|.. +++.++|+.||+
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~--~g~v~Gv~~-~g~~i~a~~VVL 169 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIK--NGKAYGVFL-DGELLKFDATVI 169 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEee--CCEEEEEEE-CCEEEEeCeEEE
Confidence 468888988888899998765 78888765 678888875 677899999884
No 234
>PRK06996 hypothetical protein; Provisional
Probab=97.98 E-value=7e-06 Score=81.21 Aligned_cols=39 Identities=15% Similarity=0.289 Sum_probs=34.3
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCC----CeEEEEccCCC
Q 015413 18 IEPTAFDLIVIGTGLPESVISAAASASG----KSVLHLDPNPF 56 (407)
Q Consensus 18 ~~~~~~DVvVIGaGl~GL~aA~~La~~G----~~VlvlE~~~~ 56 (407)
+....+||+|||||++|+++|..|+++| ++|+|+|+++.
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~ 49 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREP 49 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence 4455789999999999999999999997 47999999864
No 235
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=97.96 E-value=7.5e-06 Score=77.97 Aligned_cols=45 Identities=16% Similarity=0.199 Sum_probs=38.8
Q ss_pred CcccEEEECCChhHHHHHHHHhh----C--CCeEEEEccCCCCCCcccccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASA----S--GKSVLHLDPNPFYGSHFSSLS 65 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~----~--G~~VlvlE~~~~~GG~~~t~~ 65 (407)
+.+||+|||||.+||+||++|.+ + -.+|+|+|+...+||.+-|-.
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGa 125 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGA 125 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecce
Confidence 46999999999999999999854 2 469999999999999887643
No 236
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.96 E-value=8.6e-06 Score=83.28 Aligned_cols=45 Identities=27% Similarity=0.321 Sum_probs=40.4
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 18 ~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
++..++||||||+|.+||.||..++.+|.+|+++||....||.+.
T Consensus 2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~ 46 (562)
T COG1053 2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTV 46 (562)
T ss_pred cccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchh
Confidence 345679999999999999999999999999999999999886554
No 237
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.96 E-value=7.8e-06 Score=84.70 Aligned_cols=40 Identities=23% Similarity=0.174 Sum_probs=35.9
Q ss_pred cccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCcc
Q 015413 22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF 61 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~ 61 (407)
++||||||+|.+||+||+.++++ |.+|+|+||....||.+
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s 45 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHT 45 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCh
Confidence 58999999999999999999987 47999999998877744
No 238
>PRK08275 putative oxidoreductase; Provisional
Probab=97.95 E-value=8.2e-06 Score=84.20 Aligned_cols=53 Identities=23% Similarity=0.322 Sum_probs=40.9
Q ss_pred chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 015413 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (407)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~Ad~VI~ 332 (407)
..+.+.|.+.++..|++|+.++.|++|..+ ++++++||.. .+|+ .+.|+.||+
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VIl 194 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTD-ADGRVAGALGFDCRTGEFLVIRAKAVIL 194 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEc-CCCeEEEEEEEecCCCcEEEEECCEEEE
Confidence 467788888888889999999999999875 2577888763 3554 478999884
No 239
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=97.95 E-value=4.9e-06 Score=82.33 Aligned_cols=57 Identities=21% Similarity=0.287 Sum_probs=43.6
Q ss_pred EeecC-CcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413 272 IYPIY-GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (407)
Q Consensus 272 ~~p~g-G~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (407)
.||.. ...++.+.|.+.++..|+++++++.|++|..+ ++ .+.|++ +++++.||.||+
T Consensus 97 ~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~--~~-~~~v~~-~~~~i~ad~VIl 154 (400)
T TIGR00275 97 VFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD--DN-GFGVET-SGGEYEADKVIL 154 (400)
T ss_pred eECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec--CC-eEEEEE-CCcEEEcCEEEE
Confidence 34433 35788889988888899999999999999764 34 356765 567899999884
No 240
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.95 E-value=7.8e-06 Score=84.15 Aligned_cols=40 Identities=23% Similarity=0.327 Sum_probs=35.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC-CCCcc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF-YGSHF 61 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~-~GG~~ 61 (407)
.++||||||+|.+||+||+.+ ++|.+|+|+||... .||++
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s 46 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCT 46 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccc
Confidence 358999999999999999999 99999999999865 45553
No 241
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.95 E-value=7.6e-06 Score=75.76 Aligned_cols=58 Identities=17% Similarity=0.139 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcE--EEcCEEE-ECCCCCCC
Q 015413 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD--ILSHKLV-LDPSFTVP 339 (407)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~--i~Ad~VI-~~p~~~~~ 339 (407)
.+-++|.+..+..||.++.+-+|.+.... ++++..|.+.+... ++||.+| .+-++.-.
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~--~~~v~~i~trn~~diP~~a~~~VLAsGsffsk 319 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCK--GGRVTEIYTRNHADIPLRADFYVLASGSFFSK 319 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeee--CCeEEEEEecccccCCCChhHeeeeccccccc
Confidence 56788889899999999999999999987 88888998877665 5788877 45655533
No 242
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.93 E-value=1e-05 Score=82.07 Aligned_cols=41 Identities=32% Similarity=0.360 Sum_probs=36.5
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC--------CCCCccc
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP--------FYGSHFS 62 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~--------~~GG~~~ 62 (407)
+||+||||+|.+|+.||..+++.|++|+++|+.. .+||.+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~ 50 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCV 50 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceecccccc
Confidence 4899999999999999999999999999999742 5888654
No 243
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.92 E-value=9.3e-06 Score=84.00 Aligned_cols=40 Identities=25% Similarity=0.175 Sum_probs=36.4
Q ss_pred cccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCcc
Q 015413 22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF 61 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~ 61 (407)
++||+|||+|++||.||..++++ |.+|+|+||....||.+
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s 44 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT 44 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence 58999999999999999999987 58999999999888854
No 244
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.92 E-value=1e-05 Score=80.05 Aligned_cols=51 Identities=18% Similarity=0.137 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCc--EEEcCEEEE
Q 015413 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ--DILSHKLVL 332 (407)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~--~i~Ad~VI~ 332 (407)
++.++|.+.++..|+++++++.|+++..+ ++++..|...+|+ +++||.||+
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~--~~~V~~v~~~~g~~~~i~AD~VVL 312 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFE--GGRVTAVWTRNHGDIPLRARHFVL 312 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEeeCCceEEEECCEEEE
Confidence 78999999998999999999999999876 5666666545553 489999884
No 245
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.91 E-value=1.1e-05 Score=83.59 Aligned_cols=38 Identities=16% Similarity=0.150 Sum_probs=34.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (407)
.++||||||+|++||+||+.+++. .+|+|+||....||
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g 41 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS 41 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence 468999999999999999999986 99999999876665
No 246
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.90 E-value=1.6e-05 Score=84.67 Aligned_cols=41 Identities=24% Similarity=0.269 Sum_probs=37.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (407)
.+..+|+|||+|.+||+||+.|++.|++|+|+|+.+..|+.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP 421 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence 45679999999999999999999999999999999887765
No 247
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.90 E-value=1.2e-05 Score=82.72 Aligned_cols=40 Identities=18% Similarity=0.324 Sum_probs=36.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (407)
.++||||||+|.+||+||+.+++. .+|+|+||....||.+
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t 46 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGST 46 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCCh
Confidence 468999999999999999999987 8999999999888743
No 248
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.84 E-value=1.9e-05 Score=69.99 Aligned_cols=35 Identities=23% Similarity=0.362 Sum_probs=32.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G 58 (407)
||||||||.+|+.||..|++.|++|+++|+.+..+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~ 35 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTP 35 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccc
Confidence 79999999999999999999999999998876543
No 249
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.82 E-value=2.8e-05 Score=80.47 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=38.8
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
...+|+|||+|.+||++|..|++.|++|+|+|+++.+||..+
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 346899999999999999999999999999999999999764
No 250
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.82 E-value=1.8e-05 Score=81.09 Aligned_cols=35 Identities=34% Similarity=0.597 Sum_probs=33.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~ 54 (407)
..+||+||||+|.+|.++|.+|+.+|++|+|||+.
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG 39 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG 39 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence 35799999999999999999999999999999996
No 251
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.78 E-value=3e-05 Score=75.38 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=37.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
.+|+|||+|.+||.+|..|++.|++|+++|+.+++||...
T Consensus 19 ~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 58 (352)
T PRK12770 19 KKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML 58 (352)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence 5899999999999999999999999999999999999764
No 252
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.77 E-value=4.4e-05 Score=57.17 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=33.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G 58 (407)
.|+|||||+.|+-+|..|++.|.+|+++|+++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 38999999999999999999999999999999988
No 253
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.74 E-value=3.1e-05 Score=80.33 Aligned_cols=34 Identities=18% Similarity=0.351 Sum_probs=31.7
Q ss_pred cEEEECCChhHHHHHHHHh----hCCCeEEEEccCCCC
Q 015413 24 DLIVIGTGLPESVISAAAS----ASGKSVLHLDPNPFY 57 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La----~~G~~VlvlE~~~~~ 57 (407)
||||||+|.+||.||+.++ ++|.+|+|+||....
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~ 38 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE 38 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence 8999999999999999998 789999999998763
No 254
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.72 E-value=4.6e-05 Score=75.86 Aligned_cols=42 Identities=14% Similarity=0.062 Sum_probs=37.8
Q ss_pred cccEEEECCChhHHHHHHHH-hhCCCeEEEEccCCCCCCcccc
Q 015413 22 AFDLIVIGTGLPESVISAAA-SASGKSVLHLDPNPFYGSHFSS 63 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~L-a~~G~~VlvlE~~~~~GG~~~t 63 (407)
...|+|||||.+||.||..| ++.|++|+|+|+.+.+||.++.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence 45799999999999999965 5679999999999999998875
No 255
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.71 E-value=3e-05 Score=79.76 Aligned_cols=33 Identities=36% Similarity=0.449 Sum_probs=31.1
Q ss_pred cEEEECCChhHHHHHHHHhhCC-CeEEEEccCCC
Q 015413 24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPF 56 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G-~~VlvlE~~~~ 56 (407)
|+||||+|.+|+++|.+|+++| ++|+|||+...
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 8999999999999999999999 69999999864
No 256
>PRK13984 putative oxidoreductase; Provisional
Probab=97.70 E-value=5.3e-05 Score=79.12 Aligned_cols=43 Identities=12% Similarity=0.100 Sum_probs=39.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
.+..+|+|||+|.+|++||..|++.|++|+|+|+.+..||...
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 3457899999999999999999999999999999999999654
No 257
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.70 E-value=5.2e-05 Score=82.58 Aligned_cols=37 Identities=27% Similarity=0.426 Sum_probs=34.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
..++||||||+|.+||.||+.++++|.+|+|+||...
T Consensus 11 ~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 11 RLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 3468999999999999999999999999999999875
No 258
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.69 E-value=3.6e-05 Score=78.59 Aligned_cols=52 Identities=21% Similarity=0.252 Sum_probs=40.8
Q ss_pred chHHHHHHHHHHhc-CcEEEeCCceeEEEEecCCCcEEEEEeCC-Cc--EEEcCEEEE
Q 015413 279 GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQ--DILSHKLVL 332 (407)
Q Consensus 279 ~~l~~al~r~~~~~-Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~-G~--~i~Ad~VI~ 332 (407)
..+.++|.+.+... |++|+.+++|++|..+ +++++||.+.+ ++ .+.|+.||+
T Consensus 136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~~~~i~Ak~VVL 191 (513)
T PRK07512 136 AAIMRALIAAVRATPSITVLEGAEARRLLVD--DGAVAGVLAATAGGPVVLPARAVVL 191 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChhheeec--CCEEEEEEEEeCCeEEEEECCEEEE
Confidence 46888888877764 8999999999999875 78888887543 33 589999994
No 259
>PLN02785 Protein HOTHEAD
Probab=97.69 E-value=4.3e-05 Score=79.03 Aligned_cols=35 Identities=34% Similarity=0.477 Sum_probs=32.1
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
..||+||||+|.+|+++|.+|++ +++|+|||+...
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 36999999999999999999999 699999999753
No 260
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.69 E-value=4.3e-05 Score=78.06 Aligned_cols=37 Identities=35% Similarity=0.334 Sum_probs=33.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (407)
|||||||+|++|+.||..+++.|.+|+++|++...+|
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g 37 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIG 37 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEeccccccc
Confidence 7999999999999999999999999999999854443
No 261
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.68 E-value=3.3e-05 Score=80.32 Aligned_cols=36 Identities=25% Similarity=0.246 Sum_probs=33.1
Q ss_pred EEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413 25 LIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (407)
Q Consensus 25 VvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (407)
|||||+|.+||+||+.++++|.+|+||||...+||.
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~g 36 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRA 36 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCCc
Confidence 699999999999999999999999999999977543
No 262
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.67 E-value=4.7e-05 Score=76.96 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=40.5
Q ss_pred chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (407)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (407)
.++.+.+.+..+..|.++++++.|++|..+ ++. +.|.+.+|+++.+|.||+
T Consensus 218 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~--~~~-~~v~~~~g~~l~~D~vl~ 268 (466)
T PRK07845 218 ADAAEVLEEVFARRGMTVLKRSRAESVERT--GDG-VVVTLTDGRTVEGSHALM 268 (466)
T ss_pred HHHHHHHHHHHHHCCcEEEcCCEEEEEEEe--CCE-EEEEECCCcEEEecEEEE
Confidence 456677777778899999999999999865 344 356667888999999884
No 263
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.66 E-value=4.6e-05 Score=76.71 Aligned_cols=39 Identities=26% Similarity=0.440 Sum_probs=33.3
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t 63 (407)
+||+||||+|.+|..||++ ++|++|+++|+ +.+||.|..
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n 40 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLN 40 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeec
Confidence 5999999999999998754 46999999998 578997754
No 264
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.65 E-value=5.5e-05 Score=76.28 Aligned_cols=38 Identities=32% Similarity=0.413 Sum_probs=34.6
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
+|||||+|.+|++||..|++.|++|+++|++ .+||.+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~ 39 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCL 39 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCC
Confidence 7999999999999999999999999999987 4777654
No 265
>PRK07846 mycothione reductase; Reviewed
Probab=97.64 E-value=5e-05 Score=76.37 Aligned_cols=39 Identities=26% Similarity=0.484 Sum_probs=33.0
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t 63 (407)
+||+||||+|.+|..||.+ ++|++|+++|+ +.+||-|..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC~n 39 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTCLN 39 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCcccC
Confidence 3899999999999988876 46999999998 578886654
No 266
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.63 E-value=4.9e-05 Score=81.36 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=32.1
Q ss_pred cEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCC
Q 015413 24 DLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFY 57 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~ 57 (407)
+|+|||||++||+||..|+++ |++|+|+|++...
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~ 37 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY 37 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 799999999999999999998 8999999999863
No 267
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.61 E-value=6e-05 Score=71.31 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=40.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t 63 (407)
.+|||+|||+|.+|-.||...++.|.+...+|+|..+||.+..
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLn 80 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLN 80 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeee
Confidence 4799999999999999999999999999999999999997754
No 268
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.60 E-value=5.7e-05 Score=70.35 Aligned_cols=46 Identities=22% Similarity=0.310 Sum_probs=36.9
Q ss_pred cccEEEECCChhHHHHHHHHhh----CCCeEEEEccCCCCCCcccccchh
Q 015413 22 AFDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPFYGSHFSSLSIA 67 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~----~G~~VlvlE~~~~~GG~~~t~~~~ 67 (407)
.+||+|||+|..|++.|+.|.+ .|.+|+|+|+++.|--.....+..
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvG 135 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVG 135 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeec
Confidence 6899999999999999999864 479999999999875444434333
No 269
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.56 E-value=7.2e-05 Score=73.40 Aligned_cols=99 Identities=13% Similarity=0.045 Sum_probs=63.2
Q ss_pred chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCC--cEEEcCEEEE-CCCCCCCCC----Cccchh----
Q 015413 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG--QDILSHKLVL-DPSFTVPGS----LASSHQ---- 347 (407)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G--~~i~Ad~VI~-~p~~~~~~~----~~~~~p---- 347 (407)
..+.++|.+.++..|++++.++.|+++..+ ++++++|.++++ .+++||+||+ +-......+ .--++|
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~--~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Epif~L 340 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFE--GNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEPIFGL 340 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEee--CCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhcCceeeeccCC
Confidence 467788999999999999999999999886 677777876665 4799999884 444421211 100122
Q ss_pred hh--hhhhhhhcccCCC--ceEEEEEEEeCCCCCCC
Q 015413 348 QL--QESFQAFSLSDNK--GKVARGICITRSSLKPD 379 (407)
Q Consensus 348 ~l--p~~~~~~~~~~~~--g~~~k~i~i~~~p~~~~ 379 (407)
++ |+.+..|.+.... ..+.+.=+.+|.-|.|.
T Consensus 341 ~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~ 376 (419)
T TIGR03378 341 DVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPS 376 (419)
T ss_pred CcCCCcchhhhcchhhcCCChhhhcCceEccccCcc
Confidence 11 2344444433322 34555556677777764
No 270
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.48 E-value=8.9e-05 Score=73.41 Aligned_cols=35 Identities=37% Similarity=0.519 Sum_probs=31.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~ 54 (407)
++.|||||||||++|+-||.+.||.|.++++|=-+
T Consensus 2 ~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~ 36 (621)
T COG0445 2 PKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN 36 (621)
T ss_pred CCCCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence 45699999999999999999999999999998653
No 271
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.40 E-value=0.00018 Score=66.63 Aligned_cols=41 Identities=24% Similarity=0.263 Sum_probs=37.1
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (407)
+.--|||||+||+||+|+-.+-..|-.|++||++...||..
T Consensus 8 ~lspvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNS 48 (477)
T KOG2404|consen 8 ELSPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNS 48 (477)
T ss_pred cCCcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcc
Confidence 33369999999999999999999998899999999999975
No 272
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=97.39 E-value=0.0016 Score=61.69 Aligned_cols=43 Identities=19% Similarity=0.310 Sum_probs=37.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhC----CCeEEEEccCCCCCCcccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSS 63 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~----G~~VlvlE~~~~~GG~~~t 63 (407)
....+-|||+|++||++|..|-|. |.++.+||--+..||..-.
T Consensus 21 dqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG 67 (587)
T COG4716 21 DQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDG 67 (587)
T ss_pred ccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCC
Confidence 345689999999999999999764 7899999999999997643
No 273
>PRK09897 hypothetical protein; Provisional
Probab=97.30 E-value=0.00026 Score=72.21 Aligned_cols=41 Identities=12% Similarity=0.026 Sum_probs=35.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCC--CeEEEEccCCCCC-Ccccc
Q 015413 23 FDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYG-SHFSS 63 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G--~~VlvlE~~~~~G-G~~~t 63 (407)
.+|+|||+|.+|+++|..|.+.+ .+|+|+|++..+| |...+
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays 45 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYS 45 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeec
Confidence 58999999999999999998865 4899999999999 65433
No 274
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.25 E-value=0.00022 Score=65.91 Aligned_cols=44 Identities=23% Similarity=0.305 Sum_probs=37.4
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCcc
Q 015413 18 IEPTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF 61 (407)
Q Consensus 18 ~~~~~~DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~ 61 (407)
..-..||.||||||+.||+.|+.|.-. +.+|.|||+...++=..
T Consensus 44 ~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hq 89 (453)
T KOG2665|consen 44 ISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQ 89 (453)
T ss_pred cccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceee
Confidence 444579999999999999999998766 99999999988776433
No 275
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.20 E-value=0.00041 Score=68.60 Aligned_cols=51 Identities=12% Similarity=0.214 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 015413 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP 334 (407)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p 334 (407)
.+.+.+.+.+++.|.++++++.|++|.. ++. +.|++.+|+++.||.||+..
T Consensus 187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~---~~~-~~v~l~~g~~i~aD~Vv~a~ 237 (396)
T PRK09754 187 PVQRYLLQRHQQAGVRILLNNAIEHVVD---GEK-VELTLQSGETLQADVVIYGI 237 (396)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEEc---CCE-EEEEECCCCEEECCEEEECC
Confidence 4556677777889999999999999964 233 45778899999999999543
No 276
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.00043 Score=67.39 Aligned_cols=47 Identities=30% Similarity=0.458 Sum_probs=37.8
Q ss_pred CCCCCCCCCC--CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413 8 SELPVPPYPP--IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (407)
Q Consensus 8 ~~~~~~~~~~--~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~ 54 (407)
.-.|+||.+. ...+.|||||||||++|+-||++-||-|.+.++|-.+
T Consensus 12 ~s~~~~Rr~~~~s~~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 12 TSFPLPRRCVFSSSTSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred ccCcchhhhhcccCCCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 3456888553 2245799999999999999999999999988888664
No 277
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.15 E-value=0.00014 Score=63.38 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=36.2
Q ss_pred ccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCccc
Q 015413 23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~~ 62 (407)
-||||||+|-+||+||+..+++ ..+|.++|+.-.+||-++
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW 118 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW 118 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc
Confidence 5999999999999999999965 689999999999998665
No 278
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.06 E-value=0.00054 Score=68.79 Aligned_cols=51 Identities=16% Similarity=0.155 Sum_probs=39.4
Q ss_pred chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 015413 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (407)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~ 333 (407)
.++.+.+.+.++..|.+++++++|++|.. ++++..|.+ +++++.||.||+.
T Consensus 191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~---~~~~~~v~~-~~~~i~~d~vi~a 241 (444)
T PRK09564 191 KEITDVMEEELRENGVELHLNEFVKSLIG---EDKVEGVVT-DKGEYEADVVIVA 241 (444)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEec---CCcEEEEEe-CCCEEEcCEEEEC
Confidence 46777787888899999999999999953 444456654 5567999999954
No 279
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.05 E-value=0.00072 Score=67.52 Aligned_cols=37 Identities=14% Similarity=0.253 Sum_probs=33.7
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
+++.+|||||||++|+.+|..|.+.+.+|+|+|++++
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence 4567999999999999999999988899999999886
No 280
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=97.02 E-value=0.00083 Score=68.16 Aligned_cols=38 Identities=32% Similarity=0.408 Sum_probs=34.2
Q ss_pred CCcccEEEECCChhHHHHHHHHhhC-CCeEEEEccCCCC
Q 015413 20 PTAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFY 57 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~-G~~VlvlE~~~~~ 57 (407)
...||.||||||-+|++.|++|++. -.+|++|||....
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 4579999999999999999999987 6899999997665
No 281
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.01 E-value=0.00064 Score=66.84 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=31.0
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (407)
||+|||+|++||++|+.|++. ++|+||=|...-
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence 899999999999999999999 999999887665
No 282
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.95 E-value=0.00084 Score=66.25 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=38.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
.+++|||+|..||.+|..|++.|++|+++|+.+++||...
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~ 176 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL 176 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh
Confidence 5899999999999999999999999999999999999875
No 283
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.92 E-value=0.00095 Score=66.93 Aligned_cols=48 Identities=13% Similarity=0.132 Sum_probs=38.0
Q ss_pred chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 015413 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (407)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~ 333 (407)
.++.+.+.+.+++.|.++++++.|++|. .. .|++++|+++.+|.||+.
T Consensus 189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~----~~---~v~~~~g~~~~~D~vl~a 236 (438)
T PRK13512 189 ADMNQPILDELDKREIPYRLNEEIDAIN----GN---EVTFKSGKVEHYDMIIEG 236 (438)
T ss_pred HHHHHHHHHHHHhcCCEEEECCeEEEEe----CC---EEEECCCCEEEeCEEEEC
Confidence 3567777788888999999999999984 22 355678888999999853
No 284
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.92 E-value=0.0013 Score=61.79 Aligned_cols=43 Identities=23% Similarity=0.252 Sum_probs=39.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t 63 (407)
.+||..|||+|-+|+++|++.+..|.+|.++|..-++||-+-.
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn 61 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVN 61 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEe
Confidence 4799999999999999999999999999999999999997643
No 285
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.00098 Score=62.26 Aligned_cols=33 Identities=36% Similarity=0.419 Sum_probs=31.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEcc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDP 53 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~ 53 (407)
-+||.||||+|-+||+||-..+.-|++|.+||-
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf 50 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDF 50 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence 469999999999999999999999999999986
No 286
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.68 E-value=0.0016 Score=60.64 Aligned_cols=37 Identities=27% Similarity=0.378 Sum_probs=33.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (407)
--|.||||||+|+-||+.++++|..|.+.|-++.=+-
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~T 40 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGT 40 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEcccccCC
Confidence 4589999999999999999999999999999876553
No 287
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.48 E-value=0.0031 Score=53.74 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=30.2
Q ss_pred EEECCChhHHHHHHHHhhC-----CCeEEEEccCCCCC-Cccc
Q 015413 26 IVIGTGLPESVISAAASAS-----GKSVLHLDPNPFYG-SHFS 62 (407)
Q Consensus 26 vVIGaGl~GL~aA~~La~~-----G~~VlvlE~~~~~G-G~~~ 62 (407)
+|||+|.+|++++..|.+. ..+|+|+|++.. | |...
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~-G~G~~~ 42 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF-GAGGAY 42 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc-cccccC
Confidence 5999999999999999887 579999999666 6 5443
No 288
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=96.48 E-value=0.01 Score=56.94 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=49.3
Q ss_pred eEeecCC---cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413 271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (407)
Q Consensus 271 ~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (407)
++.+.+| ...+.++|.+.+.+.|++++.+++|+.|..+ ++++++|.+.+| +++||+||+
T Consensus 126 ~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~--~~~~~~v~~~~g-~~~a~~vV~ 187 (337)
T TIGR02352 126 VFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIR--GEKVTAIVTPSG-DVQADQVVL 187 (337)
T ss_pred EEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEee--CCEEEEEEcCCC-EEECCEEEE
Confidence 5566666 4788899999999999999999999999876 677778886666 899999994
No 289
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=96.46 E-value=0.039 Score=53.70 Aligned_cols=114 Identities=19% Similarity=0.197 Sum_probs=70.2
Q ss_pred cCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhchhhHHHHHHHHHHhhccccCCCcceEeecCCcchHHHHH
Q 015413 206 LDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF 285 (407)
Q Consensus 206 ~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~s~~~~~~~~~~~~~p~gG~~~l~~al 285 (407)
...|..+||++.++++...+-+..+....+|.++. .+ ..+.-.+...+..+ | .+-++||...|++.|
T Consensus 68 t~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~~---~i------~a~~G~vSla~a~~---g-l~sV~GGN~qI~~~l 134 (368)
T PF07156_consen 68 TKVTGEEYLKENGISERFINELVQAATRVNYGQNV---NI------HAFAGLVSLAGATG---G-LWSVEGGNWQIFEGL 134 (368)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHhheEeeccccc---ch------hhhhhheeeeeccC---C-ceEecCCHHHHHHHH
Confidence 45688999999999988886555554445676631 12 22333333223211 2 568999999999987
Q ss_pred HHHHHhcCcEEEeCCceeEEEEecCCCc-EEEEEeCC--CcEE-EcCEEEE-CCCC
Q 015413 286 CRRAAVKGCLYVLRMPVISLLTDQNSGS-YKGVRLAS--GQDI-LSHKLVL-DPSF 336 (407)
Q Consensus 286 ~r~~~~~Gg~i~l~~~V~~I~~~~~~g~-~~gV~~~~--G~~i-~Ad~VI~-~p~~ 336 (407)
.+ .-|+++ +++.|++|.....++. ...|...+ +... ..|.||+ +|-.
T Consensus 135 l~---~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~ 186 (368)
T PF07156_consen 135 LE---ASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQ 186 (368)
T ss_pred HH---HccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCcc
Confidence 65 578899 9999999943212332 23444332 2223 3599995 5653
No 290
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.37 E-value=0.0043 Score=59.66 Aligned_cols=40 Identities=30% Similarity=0.551 Sum_probs=33.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhC----CCeEEEEccC--CCCCC
Q 015413 20 PTAFDLIVIGTGLPESVISAAASAS----GKSVLHLDPN--PFYGS 59 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~----G~~VlvlE~~--~~~GG 59 (407)
...|||||+|||+.|++.|+.|..+ -+||++||.. +.+|+
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~ 79 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGD 79 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccc
Confidence 3479999999999999999999864 5799999998 44444
No 291
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.35 E-value=0.0041 Score=54.56 Aligned_cols=33 Identities=27% Similarity=0.384 Sum_probs=27.3
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
.|.|||.|..||..|+.||++|++|+-+|.+..
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 589999999999999999999999999999864
No 292
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=96.33 E-value=0.0044 Score=60.87 Aligned_cols=60 Identities=13% Similarity=0.179 Sum_probs=45.2
Q ss_pred EeecCC----cchHHHHHHHHHHhc-CcEEEeCCceeEEEEecCCCcEEEEEeC-----CCcEEEcCEEEEC
Q 015413 272 IYPIYG----QGELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRLA-----SGQDILSHKLVLD 333 (407)
Q Consensus 272 ~~p~gG----~~~l~~al~r~~~~~-Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-----~G~~i~Ad~VI~~ 333 (407)
.+...| .++|.+.|.+.+... |.++++++.|+.|.+. ++|+ +.|.+. +.++++|+.|++.
T Consensus 170 t~~~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~-~dg~-W~v~~~~~~~~~~~~v~a~FVfvG 239 (488)
T PF06039_consen 170 TRVEEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRN-GDGR-WEVKVKDLKTGEKREVRAKFVFVG 239 (488)
T ss_pred eecCCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEEC-CCCC-EEEEEEecCCCCeEEEECCEEEEC
Confidence 355556 488999998888876 9999999999999987 3554 455532 3356999999863
No 293
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.25 E-value=0.0049 Score=60.14 Aligned_cols=49 Identities=18% Similarity=0.217 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 015413 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS 335 (407)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~ 335 (407)
.+.+.+.+.+++.|.++++++.|++|. ++ .|.+.+|+++.+|.||+.+.
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~----~~---~v~~~~g~~i~~D~vi~a~G 240 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGP----DG---ALILADGRTLPADAILWATG 240 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEc----CC---eEEeCCCCEEecCEEEEccC
Confidence 466777777888999999999999884 23 46667899999999995443
No 294
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.20 E-value=0.006 Score=59.69 Aligned_cols=46 Identities=26% Similarity=0.357 Sum_probs=37.1
Q ss_pred chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCc-EEEcCEEE
Q 015413 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-DILSHKLV 331 (407)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~-~i~Ad~VI 331 (407)
.++++...+..++.|++|+++++|++|.. + +|++.+|+ +|.|+.||
T Consensus 209 ~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~---~----~v~~~~g~~~I~~~tvv 255 (405)
T COG1252 209 PKLSKYAERALEKLGVEVLLGTPVTEVTP---D----GVTLKDGEEEIPADTVV 255 (405)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCceEEECC---C----cEEEccCCeeEecCEEE
Confidence 45666667788899999999999999963 2 46667777 49999999
No 295
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=96.13 E-value=0.017 Score=56.43 Aligned_cols=58 Identities=17% Similarity=0.220 Sum_probs=49.8
Q ss_pred cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCC
Q 015413 278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFT 337 (407)
Q Consensus 278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~~~ 337 (407)
.-.+.+.|.+.++.+|++|++++.|..|+.. ++.+.+|.+++|.++.||+||+.|..-
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~--~~~~~~v~~~~g~~i~~~~vvlA~Grs 229 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIE--DNEVLGVKLTKGEEIEADYVVLAPGRS 229 (486)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeeEEEEEEec--CCceEEEEccCCcEEecCEEEEccCcc
Confidence 4566788888889999999999999999986 666678999999999999999877654
No 296
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.05 E-value=0.0073 Score=59.72 Aligned_cols=39 Identities=13% Similarity=0.131 Sum_probs=35.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (407)
-+|+|||+|..|+-+|..|++.|.+|+++|+.+++.++.
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~ 183 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN 183 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh
Confidence 369999999999999999999999999999999987654
No 297
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.04 E-value=0.0034 Score=62.28 Aligned_cols=39 Identities=21% Similarity=0.387 Sum_probs=36.2
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (407)
+|||+|||||-+|.-||..-+-.|.+|.++|++|.--|-
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGT 105 (680)
T KOG0042|consen 67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGT 105 (680)
T ss_pred cccEEEECCCccCcceeehhhcccceeEEEecccccCCc
Confidence 499999999999999999999999999999999986653
No 298
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.84 E-value=0.012 Score=51.44 Aligned_cols=33 Identities=30% Similarity=0.341 Sum_probs=28.5
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
.|.|||+|..|...|..++++|++|+++|.+..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 389999999999999999999999999999654
No 299
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.83 E-value=0.011 Score=50.42 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
.|.|||||-.|.++|..|+++|++|.++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 48999999999999999999999999999876
No 300
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.83 E-value=0.011 Score=58.27 Aligned_cols=40 Identities=25% Similarity=0.521 Sum_probs=34.7
Q ss_pred cccEEEECCChhHHHHHHHHhhC----CCeEEEEccCCCCCCccc
Q 015413 22 AFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~----G~~VlvlE~~~~~GG~~~ 62 (407)
+++|+|||+|.+|+..|..|.+. ++ +.|+|++...|+-..
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~-Isi~e~~~~~G~Gia 44 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGL-ISIFEPRPNFGQGIA 44 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCc-eEEeccccccCCCcc
Confidence 37899999999999999999775 33 999999999987654
No 301
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=95.74 E-value=0.0068 Score=55.66 Aligned_cols=41 Identities=7% Similarity=0.177 Sum_probs=37.3
Q ss_pred cccEEEECCChhHHHHHHHHhhCC------CeEEEEccCCCCCCccc
Q 015413 22 AFDLIVIGTGLPESVISAAASASG------KSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G------~~VlvlE~~~~~GG~~~ 62 (407)
...++|||+|+.|..+|++|++.+ ..++++|++...||...
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSG 56 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASG 56 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccccc
Confidence 368999999999999999999998 89999999999988654
No 302
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=95.67 E-value=0.014 Score=57.24 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 015413 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (407)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~ 333 (407)
.+.+.+.+.++..|.+++++++|++|..+ ++. +.|++.+|+++.||.||+.
T Consensus 184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~--~~~-~~v~~~~g~~i~~D~vI~a 234 (377)
T PRK04965 184 EVSSRLQHRLTEMGVHLLLKSQLQGLEKT--DSG-IRATLDSGRSIEVDAVIAA 234 (377)
T ss_pred HHHHHHHHHHHhCCCEEEECCeEEEEEcc--CCE-EEEEEcCCcEEECCEEEEC
Confidence 45666777778899999999999999864 333 4677789999999999954
No 303
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.65 E-value=0.013 Score=59.51 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=31.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
..|+|||+|.+|+.+|..|++.|++|+++|+++.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 4699999999999999999999999999998864
No 304
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=95.61 E-value=0.015 Score=56.97 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=34.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (407)
.+|+|||+|..|+-+|..|++.|++|+++|+.+++..+
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~ 179 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS 179 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch
Confidence 36999999999999999999999999999999887644
No 305
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=95.59 E-value=0.069 Score=52.43 Aligned_cols=58 Identities=24% Similarity=0.254 Sum_probs=47.4
Q ss_pred eEeecCCc---chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (407)
Q Consensus 271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (407)
.+++.+|. ..+.++|.+.+.. |++++.+++|++|+.+ +++ ++|++.+|.+++||+||+
T Consensus 124 l~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~--~~~-~~v~t~~g~~~~a~~vV~ 184 (381)
T TIGR03197 124 LFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERD--GEG-WQLLDANGEVIAASVVVL 184 (381)
T ss_pred eEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEc--CCe-EEEEeCCCCEEEcCEEEE
Confidence 55676774 6788999888888 9999999999999875 454 578888888899999883
No 306
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=95.58 E-value=0.014 Score=55.59 Aligned_cols=44 Identities=9% Similarity=-0.007 Sum_probs=38.8
Q ss_pred CcccEEEECCChhHHHHHHHHhh--CCCeEEEEccCCCCCCccccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASA--SGKSVLHLDPNPFYGSHFSSL 64 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~--~G~~VlvlE~~~~~GG~~~t~ 64 (407)
....|.|||+|.+|+.+|..|-| .+.+|.++|+.+.++|..+.-
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyG 64 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYG 64 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeec
Confidence 34589999999999999998877 479999999999999998753
No 307
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=95.47 E-value=0.02 Score=57.44 Aligned_cols=39 Identities=21% Similarity=0.066 Sum_probs=35.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (407)
-.|+|||+|..|+-+|..|++.|.+|+++|+.+++.++.
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~ 196 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPRE 196 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCC
Confidence 369999999999999999999999999999999886543
No 308
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=95.44 E-value=0.011 Score=57.20 Aligned_cols=36 Identities=31% Similarity=0.454 Sum_probs=27.9
Q ss_pred cccEEEECCChhHHHHHHHHhhCC-CeEEEEccCCCC
Q 015413 22 AFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFY 57 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G-~~VlvlE~~~~~ 57 (407)
.||+|+||.|.++|+.|+.|...+ .+++.||+++..
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f 38 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF 38 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 589999999999999999999887 999999998753
No 309
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=95.37 E-value=0.019 Score=58.16 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=34.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (407)
-.++|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~ 217 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP 217 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC
Confidence 4799999999999999999999999999999988644
No 310
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.0089 Score=56.26 Aligned_cols=40 Identities=20% Similarity=0.345 Sum_probs=34.1
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
..|||+|||+|.+|-+||.+-||+|.+.=++ .+|.||-..
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~--aerfGGQvl 249 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLV--AERFGGQVL 249 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhh--hhhhCCeec
Confidence 3599999999999999999999999987665 357888654
No 311
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.27 E-value=0.021 Score=57.68 Aligned_cols=34 Identities=26% Similarity=0.132 Sum_probs=31.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (407)
.|.|||.|.+|++||..|+++|++|++.|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 3899999999999999999999999999998764
No 312
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=95.25 E-value=0.023 Score=61.49 Aligned_cols=54 Identities=13% Similarity=0.193 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 015413 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP 334 (407)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p 334 (407)
+..+.+.+.++..|.+|++++.|++|..+ ..+....|.+.+|+++.||.||+.+
T Consensus 188 ~~~~~l~~~L~~~GV~v~~~~~v~~I~~~-~~~~~~~v~~~dG~~i~~D~Vv~A~ 241 (847)
T PRK14989 188 MGGEQLRRKIESMGVRVHTSKNTLEIVQE-GVEARKTMRFADGSELEVDFIVFST 241 (847)
T ss_pred HHHHHHHHHHHHCCCEEEcCCeEEEEEec-CCCceEEEEECCCCEEEcCEEEECC
Confidence 34556677778899999999999999753 1234457778899999999999543
No 313
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=95.25 E-value=0.022 Score=57.43 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=34.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (407)
.+++|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~ 207 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP 207 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC
Confidence 4799999999999999999999999999999998764
No 314
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.21 E-value=0.02 Score=54.50 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=31.1
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
+|.|||+|+-|...|..|+++|++|+++|++..
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 699999999999999999999999999999864
No 315
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.20 E-value=0.029 Score=53.63 Aligned_cols=36 Identities=22% Similarity=0.188 Sum_probs=32.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
+....|.|||+|.-|...|..|+++|++|+++.++.
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 444579999999999999999999999999998864
No 316
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.19 E-value=0.024 Score=47.69 Aligned_cols=31 Identities=26% Similarity=0.503 Sum_probs=29.0
Q ss_pred EEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 25 LIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 25 VvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
|+|+|+|-.|+..|++|+++|++|.++-++.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999998864
No 317
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.07 E-value=0.025 Score=56.21 Aligned_cols=35 Identities=29% Similarity=0.253 Sum_probs=31.8
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
...|.|||.|..|+..|..|+++|++|+++|.+..
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 35699999999999999999999999999998654
No 318
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=95.06 E-value=0.026 Score=56.97 Aligned_cols=38 Identities=24% Similarity=0.163 Sum_probs=34.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (407)
-+++|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 204 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR 204 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc
Confidence 47999999999999999999999999999999887643
No 319
>PRK06370 mercuric reductase; Validated
Probab=95.01 E-value=0.032 Score=56.39 Aligned_cols=38 Identities=18% Similarity=0.210 Sum_probs=35.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (407)
-+|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~ 209 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR 209 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc
Confidence 47999999999999999999999999999999988764
No 320
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.99 E-value=0.031 Score=52.70 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
..|.|||+|..|...|..|+++|++|+++|.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 369999999999999999999999999999875
No 321
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=94.97 E-value=0.03 Score=56.38 Aligned_cols=37 Identities=8% Similarity=0.086 Sum_probs=34.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (407)
-.++|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~ 203 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR 203 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence 4799999999999999999999999999999998764
No 322
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.89 E-value=0.037 Score=55.63 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=32.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
+...|+|+|+|..|+.+|..|++.|++|++.|+++
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 34679999999999999999999999999999975
No 323
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.88 E-value=0.032 Score=56.47 Aligned_cols=38 Identities=16% Similarity=0.082 Sum_probs=34.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (407)
-+++|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~ 212 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA 212 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc
Confidence 47999999999999999999999999999999987654
No 324
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.85 E-value=0.034 Score=56.12 Aligned_cols=38 Identities=24% Similarity=0.242 Sum_probs=34.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (407)
-+++|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 210 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG 210 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc
Confidence 46999999999999999999999999999999987543
No 325
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.84 E-value=0.034 Score=56.22 Aligned_cols=38 Identities=11% Similarity=0.021 Sum_probs=34.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (407)
-.|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~ 210 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN 210 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc
Confidence 37999999999999999999999999999998876543
No 326
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=94.83 E-value=0.028 Score=60.55 Aligned_cols=52 Identities=13% Similarity=0.296 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 015413 281 LPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS 335 (407)
Q Consensus 281 l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~ 335 (407)
+.+.+.+.++..|.++++++.|++|.. +++..+|++++|+++.||.||+.+.
T Consensus 184 ~~~~l~~~l~~~GV~v~~~~~v~~i~~---~~~~~~v~~~dG~~i~~D~Vi~a~G 235 (785)
T TIGR02374 184 AGRLLQRELEQKGLTFLLEKDTVEIVG---ATKADRIRFKDGSSLEADLIVMAAG 235 (785)
T ss_pred HHHHHHHHHHHcCCEEEeCCceEEEEc---CCceEEEEECCCCEEEcCEEEECCC
Confidence 445566777889999999999999964 3455678889999999999995443
No 327
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.81 E-value=0.036 Score=56.04 Aligned_cols=38 Identities=18% Similarity=0.134 Sum_probs=34.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (407)
-.|+|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~ 212 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG 212 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC
Confidence 46999999999999999999999999999999987543
No 328
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=94.81 E-value=0.034 Score=55.79 Aligned_cols=38 Identities=11% Similarity=0.049 Sum_probs=34.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (407)
-+++|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~ 186 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL 186 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh
Confidence 36999999999999999999999999999999987643
No 329
>PRK07846 mycothione reductase; Reviewed
Probab=94.80 E-value=0.036 Score=55.78 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=34.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (407)
-+++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~ 203 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR 203 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc
Confidence 4799999999999999999999999999999988753
No 330
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=94.80 E-value=0.036 Score=55.91 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=34.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (407)
-+++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~ 207 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP 207 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc
Confidence 4799999999999999999999999999999988754
No 331
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=94.74 E-value=0.04 Score=55.61 Aligned_cols=38 Identities=24% Similarity=0.149 Sum_probs=35.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (407)
-.++|||+|..|+-.|..|++.|.+|+++|+++++...
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 207 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL 207 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc
Confidence 46999999999999999999999999999999988753
No 332
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=94.66 E-value=0.083 Score=46.59 Aligned_cols=51 Identities=22% Similarity=0.166 Sum_probs=39.6
Q ss_pred chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (407)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (407)
.++.+-|.+.++.++..+++++.|++|..+ +++ +.|++.++++++||+||+
T Consensus 82 ~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~--~~~-w~v~~~~~~~~~a~~VVl 132 (203)
T PF13738_consen 82 EEVLDYLQEYAERFGLEIRFNTRVESVRRD--GDG-WTVTTRDGRTIRADRVVL 132 (203)
T ss_dssp HHHHHHHHHHHHHTTGGEETS--EEEEEEE--TTT-EEEEETTS-EEEEEEEEE
T ss_pred HHHHHHHHHHHhhcCcccccCCEEEEEEEe--ccE-EEEEEEecceeeeeeEEE
Confidence 446667777778888889999999999997 444 789988888999999994
No 333
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=94.65 E-value=0.046 Score=55.18 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=35.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (407)
-.++|||+|..|+-.|..|++.|.+|+++|+++++...
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 213 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF 213 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc
Confidence 46999999999999999999999999999999987653
No 334
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.65 E-value=0.034 Score=52.39 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=30.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
.|.|||+|..|...|..|+++|++|+++|.++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 489999999999999999999999999998754
No 335
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.64 E-value=0.043 Score=51.67 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=31.6
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (407)
.|.|||+|..|..-|..|+++|++|+++|.++..
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~ 40 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL 40 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 6999999999999999999999999999988653
No 336
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.64 E-value=0.048 Score=51.48 Aligned_cols=34 Identities=26% Similarity=0.249 Sum_probs=31.2
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
...|.|||+|.-|...|..|+++|++|+++|++.
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 3469999999999999999999999999999874
No 337
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=94.59 E-value=0.042 Score=54.84 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=33.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G 58 (407)
-.|+|||+|..|+-+|..|++.|.+|+++++.+++.
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~ 173 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERIL 173 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccC
Confidence 479999999999999999999999999999998874
No 338
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=94.52 E-value=0.15 Score=50.37 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=31.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
|||+|||+|++|+++|..|+++|++|+++|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 699999999999999999999999999999875
No 339
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.51 E-value=0.043 Score=49.71 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=31.1
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
+++|||+|--|.+.|..|++.|+.|+++|+++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 689999999999999999999999999999754
No 340
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=94.45 E-value=0.044 Score=59.10 Aligned_cols=36 Identities=22% Similarity=0.180 Sum_probs=33.4
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (407)
.|+|||+|+.|+-+|..|++.|.+|+|+|+.+++-.
T Consensus 142 ~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~ 177 (785)
T TIGR02374 142 KAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA 177 (785)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh
Confidence 699999999999999999999999999999888644
No 341
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.39 E-value=0.047 Score=51.28 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
..|.|||+|..|...|..|+++|++|+++|.++.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 3699999999999999999999999999997654
No 342
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=94.38 E-value=0.057 Score=54.78 Aligned_cols=38 Identities=24% Similarity=0.269 Sum_probs=34.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (407)
-.|+|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 221 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA 221 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc
Confidence 47999999999999999999999999999999987543
No 343
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.23 E-value=0.054 Score=55.56 Aligned_cols=36 Identities=19% Similarity=0.084 Sum_probs=33.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G 58 (407)
-+|+|||+|..|+-+|..|++.|.+|+++|+.+++.
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~ 388 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK 388 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC
Confidence 379999999999999999999999999999988774
No 344
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.17 E-value=0.039 Score=51.35 Aligned_cols=43 Identities=26% Similarity=0.407 Sum_probs=38.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccC--------CCCCCcccccc
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN--------PFYGSHFSSLS 65 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~--------~~~GG~~~t~~ 65 (407)
-+|+|||+|..|.-||....--|-+|++||.| +.+|||..+..
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~ 219 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLY 219 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEE
Confidence 47999999999999999999999999999999 66788877654
No 345
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=94.13 E-value=0.064 Score=54.03 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=34.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (407)
-.++|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~ 206 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR 206 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc
Confidence 4799999999999999999999999999999988754
No 346
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.11 E-value=0.059 Score=51.48 Aligned_cols=33 Identities=36% Similarity=0.424 Sum_probs=30.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
.|.|||+|..|..-|..++++|++|+++|.++.
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 599999999999999999999999999998753
No 347
>PRK04148 hypothetical protein; Provisional
Probab=94.04 E-value=0.051 Score=44.67 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=30.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
..+++||.| .|...|..|++.|++|+.+|-+..
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 469999999 888889999999999999999877
No 348
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=94.00 E-value=0.08 Score=53.57 Aligned_cols=39 Identities=21% Similarity=0.196 Sum_probs=35.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (407)
-.++|||+|..|+-.|..|++.|.+|+++|+.+++....
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~ 216 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGE 216 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCC
Confidence 369999999999999999999999999999999877653
No 349
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.00 E-value=0.06 Score=51.94 Aligned_cols=32 Identities=31% Similarity=0.438 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
++.|||+|..||+.|+.||+.|++|+.+|...
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 58999999999999999999999999999864
No 350
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.99 E-value=0.067 Score=50.50 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
-.|.|||+|.-|...|..|+++|++|+++|.++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 3599999999999999999999999999998764
No 351
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=93.99 E-value=0.065 Score=53.93 Aligned_cols=34 Identities=24% Similarity=0.157 Sum_probs=31.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
-.|||||+|..|+-+|..|++.|.+|++++++++
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~ 306 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR 306 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 3799999999999999999999999999999875
No 352
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=93.98 E-value=0.067 Score=53.66 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=33.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (407)
-.|+|||+|..|+-+|..|++.|.+|+++++.+++.+
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~ 186 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP 186 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc
Confidence 4699999999999999999999999999999887654
No 353
>PRK10262 thioredoxin reductase; Provisional
Probab=93.84 E-value=0.079 Score=50.66 Aligned_cols=35 Identities=17% Similarity=0.085 Sum_probs=32.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (407)
-.|+|||+|..|+-+|..|++.|.+|+++++++.+
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~ 181 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF 181 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc
Confidence 47999999999999999999999999999998875
No 354
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=93.84 E-value=0.089 Score=45.29 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=29.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
..|+|+|+|-.|+.||..|.+.|.+|+++|.+.
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 469999999999999999999999999999863
No 355
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=93.78 E-value=0.072 Score=57.77 Aligned_cols=36 Identities=19% Similarity=0.179 Sum_probs=33.3
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (407)
.++|||+|+.|+-+|..|++.|.+|+|+|..+++-.
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~ 182 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA 182 (847)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh
Confidence 589999999999999999999999999999987644
No 356
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=93.78 E-value=0.076 Score=55.81 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=34.6
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (407)
+|+|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~ 350 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL 350 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc
Confidence 6999999999999999999999999999999998753
No 357
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=93.76 E-value=0.081 Score=53.21 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=33.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (407)
-.++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~ 203 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR 203 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc
Confidence 3599999999999999999999999999999888643
No 358
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=93.74 E-value=0.16 Score=50.42 Aligned_cols=36 Identities=33% Similarity=0.577 Sum_probs=33.6
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (407)
||||||+|++||+||+.++++|.+|+||||.+.+||
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg 36 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGG 36 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGS
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccccc
Confidence 899999999999999999999999999999999999
No 359
>PTZ00058 glutathione reductase; Provisional
Probab=93.74 E-value=0.074 Score=54.93 Aligned_cols=37 Identities=8% Similarity=0.012 Sum_probs=34.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (407)
-.|+|||+|..|+-.|..|++.|.+|+++|+++++..
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~ 274 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR 274 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccc
Confidence 4699999999999999999999999999999998764
No 360
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=93.70 E-value=0.077 Score=54.42 Aligned_cols=35 Identities=23% Similarity=0.140 Sum_probs=32.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (407)
-+|+|||||.+|+-+|..|++.|++|+++++.+++
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l 386 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL 386 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence 37999999999999999999999999999998876
No 361
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=93.63 E-value=0.083 Score=50.01 Aligned_cols=32 Identities=19% Similarity=0.356 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
.|.|||+|-.|...|..|+++|++|++++++.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 48999999999999999999999999999853
No 362
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.56 E-value=0.084 Score=54.67 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=32.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (407)
-.|+|||+|..|+-.|..|++.|.+|+++++.+++
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~ 178 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF 178 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence 46999999999999999999999999999998865
No 363
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=93.55 E-value=0.094 Score=52.53 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=35.1
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (407)
.++|||+|.-|+=.|-.+++-|.+|+|+|+++++--..
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~ 212 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGE 212 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcC
Confidence 49999999999999999999999999999999987633
No 364
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.46 E-value=0.1 Score=49.76 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHhhCC--CeEEEEccCC
Q 015413 24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNP 55 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G--~~VlvlE~~~ 55 (407)
+|.|||+|..|+++|+.|+++| ..|.++|++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 5999999999999999999999 5899999874
No 365
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.44 E-value=0.1 Score=49.68 Aligned_cols=33 Identities=30% Similarity=0.342 Sum_probs=30.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
..|.|||+|..|...|..|+++|++|+++|.+.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 369999999999999999999999999999765
No 366
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=93.43 E-value=0.082 Score=52.56 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
.|.|||.|..|+..|..|+++|++|+++|++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 589999999999999999999999999998764
No 367
>PLN02507 glutathione reductase
Probab=93.41 E-value=0.098 Score=53.39 Aligned_cols=36 Identities=14% Similarity=0.052 Sum_probs=33.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G 58 (407)
-+|+|||+|..|+-.|..|++.|.+|+++|+.+++-
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l 239 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL 239 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC
Confidence 369999999999999999999999999999988754
No 368
>PRK12831 putative oxidoreductase; Provisional
Probab=93.41 E-value=0.094 Score=53.01 Aligned_cols=34 Identities=18% Similarity=0.063 Sum_probs=31.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
-.|+|||+|..|+-+|..|++.|.+|++++++++
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~ 315 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE 315 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 4799999999999999999999999999998764
No 369
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=93.39 E-value=0.52 Score=46.10 Aligned_cols=57 Identities=23% Similarity=0.373 Sum_probs=45.9
Q ss_pred eEeecC-CcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCC-cEEEcCEEEE
Q 015413 271 LIYPIY-GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG-QDILSHKLVL 332 (407)
Q Consensus 271 ~~~p~g-G~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G-~~i~Ad~VI~ 332 (407)
..||.- -++++.++|.+.++..|++|+++++|++| + +++ ..|.+.++ ++++||+||+
T Consensus 77 rvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~--~~~-~~v~~~~~~~~~~a~~vIl 135 (376)
T TIGR03862 77 RVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--Q--GGT-LRFETPDGQSTIEADAVVL 135 (376)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--e--CCc-EEEEECCCceEEecCEEEE
Confidence 578855 58999999999999999999999999999 3 333 46776433 5699999994
No 370
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=93.39 E-value=0.09 Score=51.05 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCe-EEEEccCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNPF 56 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~-VlvlE~~~~ 56 (407)
-.|+|||+|..|+-+|..|++.|.+ |+|++++++
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~ 207 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI 207 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence 3699999999999999999999987 999998765
No 371
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=93.37 E-value=0.12 Score=48.84 Aligned_cols=33 Identities=36% Similarity=0.456 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
-.|.|||+|..|...|..|+++|++|.++|++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 359999999999999999999999999999875
No 372
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=93.36 E-value=0.14 Score=44.03 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=30.3
Q ss_pred CcccEEEECCCh-hHHHHHHHHhhCCCeEEEEccC
Q 015413 21 TAFDLIVIGTGL-PESVISAAASASGKSVLHLDPN 54 (407)
Q Consensus 21 ~~~DVvVIGaGl-~GL~aA~~La~~G~~VlvlE~~ 54 (407)
....|+|||+|- .|..+|..|.+.|.+|.++.++
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 346899999995 7999999999999999999976
No 373
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=93.32 E-value=0.12 Score=51.73 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=34.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (407)
-.++|||+|..|+-.|..|++.|.+|+++|+++++...
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 196 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR 196 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC
Confidence 36999999999999999999999999999999887644
No 374
>PRK06116 glutathione reductase; Validated
Probab=93.28 E-value=0.11 Score=52.27 Aligned_cols=36 Identities=11% Similarity=0.041 Sum_probs=33.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G 58 (407)
-.|+|||+|..|+-.|..|++.|.+|+++++++++.
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l 203 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL 203 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc
Confidence 479999999999999999999999999999988764
No 375
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.27 E-value=0.11 Score=52.54 Aligned_cols=43 Identities=28% Similarity=0.398 Sum_probs=37.0
Q ss_pred CCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413 10 LPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (407)
Q Consensus 10 ~~~~~~~~~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~ 54 (407)
-|..+.|.+.++. |.|+|.|-+|.++|..|.+.|.+|.+.|++
T Consensus 5 ~~~~~~~~~~~~~--v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 5 VPLSALPQELSGR--VLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred ChhhhcccccCCe--EEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 3566777776654 899999999999999999999999999975
No 376
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=93.22 E-value=0.096 Score=50.58 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=30.0
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
+|.|||+|.-|...|..|+++|++|++++++.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 59999999999999999999999999999853
No 377
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=93.13 E-value=0.13 Score=48.95 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHhhCCC-eEEEEccCCC
Q 015413 24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNPF 56 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~~ 56 (407)
.|.|||+|..|+..|+.|+..|+ +|+++|.+..
T Consensus 3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~ 36 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEKELADLVLLDVVEG 36 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 68999999999999999999887 8999998544
No 378
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=93.07 E-value=0.28 Score=50.36 Aligned_cols=59 Identities=22% Similarity=0.288 Sum_probs=46.0
Q ss_pred eEeecCC---cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeC---CC--cEEEcCEEEE
Q 015413 271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SG--QDILSHKLVL 332 (407)
Q Consensus 271 ~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~---~G--~~i~Ad~VI~ 332 (407)
+.++ .| ...+..++++.+...|++|+.+++|++|+.+ ++++++|++. +| .+++|++||.
T Consensus 118 ~~~~-dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~~~~~g~~~~i~a~~VVn 184 (516)
T TIGR03377 118 VKVP-DGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIRE--GGRVTGVKVEDHKTGEEERIEAQVVIN 184 (516)
T ss_pred EEeC-CcEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcCEEEE
Confidence 5556 34 3567788889999999999999999999986 6777777753 34 3689999993
No 379
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=93.03 E-value=0.29 Score=49.76 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=35.8
Q ss_pred ccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCccc
Q 015413 23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~~ 62 (407)
+||||||||+.|+++|+.|++. |.+|+|||+.+.+|...+
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~S 42 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAESS 42 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhhC
Confidence 6999999999999999999997 999999999887774433
No 380
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=93.02 E-value=0.1 Score=48.41 Aligned_cols=33 Identities=15% Similarity=0.088 Sum_probs=26.9
Q ss_pred cccEEEECCChhHHHHHHHHhhCC-------CeEEEEccC
Q 015413 22 AFDLIVIGTGLPESVISAAASASG-------KSVLHLDPN 54 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G-------~~VlvlE~~ 54 (407)
+.+++|||+|..||+.|..+.+.+ .+|+|++-+
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr 42 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR 42 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence 468999999999999998888855 467777654
No 381
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=92.99 E-value=0.11 Score=52.33 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=29.6
Q ss_pred ccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCC
Q 015413 23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPF 56 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~~~ 56 (407)
..|.|||+|..||..|+.||++ |++|+.+|.+..
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 3599999999999999999998 588999997643
No 382
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=92.98 E-value=0.13 Score=48.36 Aligned_cols=35 Identities=14% Similarity=0.110 Sum_probs=32.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (407)
.+|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~ 176 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKF 176 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCccc
Confidence 47999999999999999999999999999998765
No 383
>PLN02546 glutathione reductase
Probab=92.97 E-value=0.13 Score=53.09 Aligned_cols=38 Identities=8% Similarity=-0.040 Sum_probs=34.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (407)
-+|+|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~ 290 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG 290 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc
Confidence 47999999999999999999999999999999887643
No 384
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=92.96 E-value=0.12 Score=49.02 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=28.6
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEcc
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDP 53 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~ 53 (407)
.|.|||+|..|...|..|+++|++|+++.+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 589999999999999999999999999987
No 385
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=92.95 E-value=0.12 Score=49.09 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=30.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~ 54 (407)
.+|.|||+|--|...|+.|+++|.+|+++.+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 36999999999999999999999999999986
No 386
>PRK13748 putative mercuric reductase; Provisional
Probab=92.85 E-value=0.14 Score=53.13 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (407)
-.++|||+|..|+-.|..|++.|.+|+++++++.+
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l 305 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTLF 305 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccc
Confidence 36999999999999999999999999999986543
No 387
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=92.79 E-value=0.15 Score=48.86 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
+|.|||+|..|...|..|+++|++|.+++++.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999999864
No 388
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=92.77 E-value=0.12 Score=45.83 Aligned_cols=42 Identities=17% Similarity=0.301 Sum_probs=35.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEcc---CCC-CCCcccc
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDP---NPF-YGSHFSS 63 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~---~~~-~GG~~~t 63 (407)
.-.|+|||+|.++-+||++++|+-.|-+++|- |+. +||-..|
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtT 53 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTT 53 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeee
Confidence 34899999999999999999999999999994 444 3776554
No 389
>PRK14694 putative mercuric reductase; Provisional
Probab=92.70 E-value=0.16 Score=51.44 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
-.++|||+|..|+-.|..|++.|.+|+++++..
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~ 211 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSR 211 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 369999999999999999999999999998743
No 390
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=92.65 E-value=0.18 Score=43.13 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=28.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
..|-+||.|..|...|..|.++|++|.+++++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 468999999999999999999999999999764
No 391
>PRK14727 putative mercuric reductase; Provisional
Probab=92.53 E-value=0.17 Score=51.31 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
-.++|||+|..|+-.|..|++.|.+|+++++...
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 222 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTL 222 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 3699999999999999999999999999997543
No 392
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=92.45 E-value=0.16 Score=49.63 Aligned_cols=33 Identities=30% Similarity=0.347 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
.+|+|||+|-.|+.+|..|.+.|.+|+++|++.
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 569999999999999999999999999999863
No 393
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.44 E-value=0.19 Score=48.25 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
..|.|||+|--|...|..|+++|++|++++++.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 369999999999999999999999999999864
No 394
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.41 E-value=0.1 Score=49.37 Aligned_cols=53 Identities=21% Similarity=0.114 Sum_probs=43.1
Q ss_pred CCCCCCCCCCCCCCCCC----CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 4 NESESELPVPPYPPIEP----TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 4 ~~~~~~~~~~~~~~~~~----~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
.|.||.||--.|+|.-. +-.||.|||+|-+|.-||+.||--=.-|++||=.+.
T Consensus 332 GE~e~rnKGVayCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~e 388 (520)
T COG3634 332 GEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE 388 (520)
T ss_pred chHHHhhCCeeeCCCCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchh
Confidence 36788888878887533 246999999999999999999977778999996554
No 395
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=92.37 E-value=0.39 Score=50.05 Aligned_cols=52 Identities=23% Similarity=0.308 Sum_probs=42.2
Q ss_pred chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeC-CCc--EEEc-CEEEE
Q 015413 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILS-HKLVL 332 (407)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~--~i~A-d~VI~ 332 (407)
..+.++|.+.++..|++|+++++|++|..+ ++++++|... +++ +++| +.||+
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~--~g~v~GV~~~~~~~~~~i~a~k~VVl 272 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLRE--DGRVAGAVVETPGGLQEIRARKGVVL 272 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe--CCEEEEEEEEECCcEEEEEeCCEEEE
Confidence 468889999999999999999999999886 7888888653 233 4789 88884
No 396
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=92.37 E-value=0.17 Score=49.32 Aligned_cols=45 Identities=24% Similarity=0.423 Sum_probs=38.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCC-CeEEEEccC--------CCCCCcccccchh
Q 015413 23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPN--------PFYGSHFSSLSIA 67 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G-~~VlvlE~~--------~~~GG~~~t~~~~ 67 (407)
.+|+|||+|..|.++|..|++.| .+|++.+|+ ...+++..+..++
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD 55 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVD 55 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEec
Confidence 47999999999999999999999 999999998 5556666665544
No 397
>PRK07121 hypothetical protein; Validated
Probab=92.34 E-value=0.41 Score=48.75 Aligned_cols=55 Identities=27% Similarity=0.386 Sum_probs=43.8
Q ss_pred CcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeC-CCc--EEEc-CEEEE
Q 015413 277 GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILS-HKLVL 332 (407)
Q Consensus 277 G~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~--~i~A-d~VI~ 332 (407)
+...+.+.|.+.+++.|++|+++++|++|..+ +++++++|+.. +++ +++| +.||+
T Consensus 175 ~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~-~~g~v~Gv~~~~~~~~~~i~a~k~VVl 233 (492)
T PRK07121 175 GGAMLMDPLAKRAAALGVQIRYDTRATRLIVD-DDGRVVGVEARRYGETVAIRARKGVVL 233 (492)
T ss_pred chHHHHHHHHHHHHhCCCEEEeCCEEEEEEEC-CCCCEEEEEEEeCCcEEEEEeCCEEEE
Confidence 34578899999999999999999999999986 35788888754 333 4789 88884
No 398
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=92.33 E-value=0.62 Score=46.15 Aligned_cols=60 Identities=15% Similarity=0.192 Sum_probs=43.5
Q ss_pred ceEeecCCc---chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCC-----cEEEcCEEEE
Q 015413 270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG-----QDILSHKLVL 332 (407)
Q Consensus 270 ~~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G-----~~i~Ad~VI~ 332 (407)
+++++..|. ..+.++|.+.++..|++++.+++|++|..+ ++.+ .|.+.++ .+++||+||.
T Consensus 185 a~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~--~~~~-~v~~~~~~~~~~~~i~a~~vV~ 252 (410)
T PRK12409 185 GYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTD--GGGV-VLTVQPSAEHPSRTLEFDGVVV 252 (410)
T ss_pred EEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe--CCEE-EEEEEcCCCCccceEecCEEEE
Confidence 355666554 455678889899999999999999999875 4543 4433332 3799999994
No 399
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=92.32 E-value=0.2 Score=49.12 Aligned_cols=41 Identities=17% Similarity=0.376 Sum_probs=34.4
Q ss_pred CCCCCCCcccEEEEC-CChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 15 YPPIEPTAFDLIVIG-TGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 15 ~~~~~~~~~DVvVIG-aGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
+.++++....|.||| .|+-|-..|..|+++|+.|.++++++
T Consensus 91 ~~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 91 FKTLNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred ccccCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 334444456799999 89999999999999999999999864
No 400
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=92.26 E-value=0.25 Score=48.39 Aligned_cols=43 Identities=19% Similarity=0.260 Sum_probs=37.6
Q ss_pred CCCCCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCeEEEEccC
Q 015413 12 VPPYPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPN 54 (407)
Q Consensus 12 ~~~~~~~~~~~~DVvVIGa-Gl~GL~aA~~La~~G~~VlvlE~~ 54 (407)
.|+.+.++.+...|+|.|+ |.-|...+..|.++|++|+.+.++
T Consensus 11 ~~~~~~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 11 LEREPYWPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred cCCCCCCCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEec
Confidence 3556777777788999998 999999999999999999999875
No 401
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.24 E-value=0.23 Score=39.49 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=28.8
Q ss_pred EEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 25 LIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 25 VvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
|||||.|-.|...|..|.+.+.+|+++|.+..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 69999999999999999998889999999854
No 402
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.22 E-value=0.22 Score=47.47 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
..|.|||+|.-|...|..|+++|++|.+.+++.
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 469999999999999999999999999999875
No 403
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=92.09 E-value=0.13 Score=40.29 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=31.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
.+...|+|||+|-.|..-+..|.+.|.+|+|+-...
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 345689999999999999999999999999998875
No 404
>PTZ00052 thioredoxin reductase; Provisional
Probab=91.97 E-value=0.2 Score=51.21 Aligned_cols=31 Identities=10% Similarity=0.051 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~ 54 (407)
+++|||+|..|+-.|..|++.|.+|++++++
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 7999999999999999999999999999974
No 405
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=91.93 E-value=0.19 Score=47.12 Aligned_cols=32 Identities=16% Similarity=0.294 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
.|.|||.|+-|...|..|+++|++|++++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 48999999999999999999999999999864
No 406
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=91.92 E-value=0.22 Score=44.38 Aligned_cols=34 Identities=12% Similarity=0.095 Sum_probs=30.8
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
.-.|+|||||-.|+..+..|.+.|.+|+|+..+.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3579999999999999999999999999998753
No 407
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=91.87 E-value=0.2 Score=50.54 Aligned_cols=34 Identities=24% Similarity=0.155 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC-eEEEEccCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF 56 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~~ 56 (407)
-.|+|||+|..|+-+|..|++.|. +|++++++++
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~ 308 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGR 308 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 479999999999999999999998 8999998765
No 408
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=91.80 E-value=0.2 Score=41.43 Aligned_cols=32 Identities=28% Similarity=0.468 Sum_probs=27.9
Q ss_pred EEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 25 LIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 25 VvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
++|+|+|+-+...|..++.-|++|+|+|-+..
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999999854
No 409
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=91.78 E-value=0.2 Score=49.38 Aligned_cols=32 Identities=22% Similarity=0.239 Sum_probs=28.6
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
.|.|||+|..|+..|..|+. |++|+++|.+..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 48999999999999988885 999999998654
No 410
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.74 E-value=0.21 Score=50.40 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=30.4
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
.|.|+|.|.+|+++|..|.+.|++|.+.|.++
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 69999999999999999999999999999875
No 411
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=91.71 E-value=0.26 Score=41.95 Aligned_cols=33 Identities=15% Similarity=0.132 Sum_probs=29.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEc
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLD 52 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE 52 (407)
.+.-.|+|||||-.|+.-|..|.+.|.+|+|+.
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 345679999999999999999999999999994
No 412
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=91.68 E-value=0.23 Score=50.56 Aligned_cols=31 Identities=13% Similarity=0.132 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~ 54 (407)
.++|||+|..|+-+|..|++.|.+|+++++.
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 6999999999999999999999999999974
No 413
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=91.65 E-value=0.25 Score=43.93 Aligned_cols=33 Identities=12% Similarity=0.284 Sum_probs=30.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEcc
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDP 53 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~ 53 (407)
+...|+|||||-.|...|..|.++|.+|+|+++
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 456799999999999999999999999999975
No 414
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=91.63 E-value=0.18 Score=49.59 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=35.4
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhC-----CCeEEEEccCCCCCCc
Q 015413 18 IEPTAFDLIVIGTGLPESVISAAASAS-----GKSVLHLDPNPFYGSH 60 (407)
Q Consensus 18 ~~~~~~DVvVIGaGl~GL~aA~~La~~-----G~~VlvlE~~~~~GG~ 60 (407)
+++..+||||||||.+|+.+|+.|+.. .++++++|...+.==|
T Consensus 14 ~~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~~r 61 (486)
T COG2509 14 LMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIEQR 61 (486)
T ss_pred HhhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccchhhh
Confidence 445679999999999999999999853 7899999986654433
No 415
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=91.61 E-value=0.59 Score=46.74 Aligned_cols=49 Identities=20% Similarity=0.314 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 015413 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV 331 (407)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI 331 (407)
.+-+.|.+.+++.|++|+.+++|++|+.+ ++++++|+ ++|++++||.||
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~--~g~v~~v~-~~g~~i~A~~VI 157 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQR--DGKVVGVE-ADGDVIEAKTVI 157 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEe--CCEEEEEE-cCCcEEECCEEE
Confidence 44456777788899999999999999876 66666665 577789999999
No 416
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=91.59 E-value=0.15 Score=41.70 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=30.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
....+|.|||+|=.|-..|..|.++|+.|.-+..++.
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~ 44 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSP 44 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCc
Confidence 3457899999999999999999999999998876643
No 417
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=91.55 E-value=0.38 Score=42.69 Aligned_cols=35 Identities=17% Similarity=0.140 Sum_probs=31.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~ 54 (407)
+....++|+|.|-.|..+|..|.+.|.+|++.|.+
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 34456999999999999999999999999999876
No 418
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=91.54 E-value=0.19 Score=47.14 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=30.7
Q ss_pred CcccEEEECCChhHHHHHHHHhhC-CC-eEEEEccCCC
Q 015413 21 TAFDLIVIGTGLPESVISAAASAS-GK-SVLHLDPNPF 56 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~-G~-~VlvlE~~~~ 56 (407)
.++.|+|||||-+|+..|+.+.++ |. +|-|+|-.++
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 579999999999999999999876 54 7888887654
No 419
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=91.45 E-value=0.24 Score=50.32 Aligned_cols=37 Identities=14% Similarity=0.122 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHh---hCCCeEEEEccCCCCCC
Q 015413 23 FDLIVIGTGLPESVISAAAS---ASGKSVLHLDPNPFYGS 59 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La---~~G~~VlvlE~~~~~GG 59 (407)
-.++|||+|..|+-.|..++ +.|.+|+++|+++++..
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~ 227 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR 227 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc
Confidence 46999999999999996554 45999999999998764
No 420
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.39 E-value=0.23 Score=50.27 Aligned_cols=34 Identities=12% Similarity=-0.184 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
-.|+|+|.|-+|.+||..|.+.|.+|++.|.++.
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~ 42 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCNA 42 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence 3699999999999999999999999999997654
No 421
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=91.31 E-value=0.27 Score=49.06 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=32.5
Q ss_pred cEEEECCChhHHHHHHHHhh--------------CCCeEEEEccCCCCCCc
Q 015413 24 DLIVIGTGLPESVISAAASA--------------SGKSVLHLDPNPFYGSH 60 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~--------------~G~~VlvlE~~~~~GG~ 60 (407)
.++|||+|..|+-.|..|+. .|.+|+++|+.+++...
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~ 225 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS 225 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc
Confidence 79999999999999999875 58999999999887553
No 422
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.31 E-value=0.32 Score=48.85 Aligned_cols=35 Identities=20% Similarity=0.139 Sum_probs=31.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (407)
..++|+|.|-+|+++|..|++.|++|++.|.++..
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~ 40 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP 40 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 36999999999999999999999999999987653
No 423
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=91.25 E-value=0.25 Score=50.35 Aligned_cols=34 Identities=29% Similarity=0.375 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
..|.|||+|..|...|..|+++|++|+++|++..
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3599999999999999999999999999998744
No 424
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.23 E-value=0.27 Score=47.17 Aligned_cols=32 Identities=25% Similarity=0.249 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
++.|||+|--|.+.|..|+++|++|.++.++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 48999999999999999999999999998853
No 425
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=91.18 E-value=0.75 Score=45.24 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=35.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (407)
Q Consensus 20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (407)
+.++||+|||||++||++|+.|+++|++|+|+|+++..
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~ 41 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPP 41 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCc
Confidence 45689999999999999999999999999999998753
No 426
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=91.16 E-value=2.1 Score=45.00 Aligned_cols=54 Identities=28% Similarity=0.444 Sum_probs=42.0
Q ss_pred chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 015413 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (407)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~Ad~VI~ 332 (407)
..+..+|++.++..|++++.+++|++|..+..++++++|++ .+|+ +++||.||.
T Consensus 232 ~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVn 290 (627)
T PLN02464 232 SRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVN 290 (627)
T ss_pred HHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEE
Confidence 47788899999999999999999999987511366777765 2344 589999994
No 427
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=91.13 E-value=2.3 Score=43.59 Aligned_cols=51 Identities=27% Similarity=0.301 Sum_probs=39.2
Q ss_pred chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCC---Cc--EEEcCEEEE
Q 015413 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS---GQ--DILSHKLVL 332 (407)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~---G~--~i~Ad~VI~ 332 (407)
..+..++++.+...|++++.+++|++|..+ ++. ++|++.+ |+ +++|+.||.
T Consensus 155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~--~~~-~~v~~~~~~~g~~~~i~a~~VVn 210 (508)
T PRK12266 155 ARLVVLNARDAAERGAEILTRTRVVSARRE--NGL-WHVTLEDTATGKRYTVRARALVN 210 (508)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEe--CCE-EEEEEEEcCCCCEEEEEcCEEEE
Confidence 456677778888999999999999999875 444 4666543 53 689999994
No 428
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=91.10 E-value=0.75 Score=47.90 Aligned_cols=52 Identities=25% Similarity=0.267 Sum_probs=41.8
Q ss_pred chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCC-Cc--EEEc-CEEEE
Q 015413 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQ--DILS-HKLVL 332 (407)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~-G~--~i~A-d~VI~ 332 (407)
..|.++|.+.++..|++|+++++|+++..+ ++++++|...+ |+ ++.| +.||+
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~--~g~V~GV~~~~~g~~~~i~A~~~VVl 276 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETD--HGRVIGATVVQGGVRRRIRARGGVVL 276 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEee--CCEEEEEEEecCCeEEEEEccceEEE
Confidence 468888999899999999999999999876 78888987643 33 4776 56884
No 429
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=91.08 E-value=0.25 Score=43.98 Aligned_cols=35 Identities=29% Similarity=0.347 Sum_probs=31.9
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
...|.|||||+.|.-.|-..+.+|+.|.+.|++.-
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 45799999999999999999999999999999854
No 430
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=91.00 E-value=0.91 Score=45.20 Aligned_cols=34 Identities=35% Similarity=0.529 Sum_probs=32.2
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
+|||+|||+|++|++||..|+++|++|+|+|+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4899999999999999999999999999999864
No 431
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.98 E-value=0.32 Score=48.87 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
-.|+|+|+|-+|+++|..|+++|++|++.|++.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 358999999999999999999999999999764
No 432
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=90.96 E-value=0.98 Score=44.27 Aligned_cols=53 Identities=23% Similarity=0.379 Sum_probs=41.5
Q ss_pred chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 015413 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (407)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~ 333 (407)
..+.+.+.+.++.....-.....|+.|..+ ++++++|.+.+|+++.||.||+.
T Consensus 95 ~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e--~~~v~GV~~~~g~~~~a~~vVla 147 (392)
T PF01134_consen 95 DKYSRAMREKLESHPNLTIIQGEVTDLIVE--NGKVKGVVTKDGEEIEADAVVLA 147 (392)
T ss_dssp HHHHHHHHHHHHTSTTEEEEES-EEEEEEC--TTEEEEEEETTSEEEEECEEEE-
T ss_pred HHHHHHHHHHHhcCCCeEEEEcccceEEec--CCeEEEEEeCCCCEEecCEEEEe
Confidence 445566667777756555578999999987 89999999999999999999953
No 433
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=90.96 E-value=0.29 Score=49.88 Aligned_cols=32 Identities=28% Similarity=0.366 Sum_probs=30.0
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
.|.|||+|.-|..-|..|+++|++|+++|++.
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 59999999999999999999999999999864
No 434
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=90.93 E-value=0.71 Score=48.13 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=41.6
Q ss_pred cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeC-CCc--EEEcCE-EE
Q 015413 278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILSHK-LV 331 (407)
Q Consensus 278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~--~i~Ad~-VI 331 (407)
...+...|.+.++..|++|+++++|++|.++ ++|+++||... +|+ +++|++ ||
T Consensus 212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d-~~g~V~Gv~~~~~~~~~~i~a~~aVi 268 (584)
T PRK12835 212 GQSLVARLRLALKDAGVPLWLDSPMTELITD-PDGAVVGAVVEREGRTLRIGARRGVI 268 (584)
T ss_pred cHHHHHHHHHHHHhCCceEEeCCEEEEEEEC-CCCcEEEEEEEeCCcEEEEEeceeEE
Confidence 4567777878888899999999999999986 36889998653 343 378874 87
No 435
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=90.92 E-value=0.32 Score=43.82 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=28.7
Q ss_pred cEEEEC-CChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 24 DLIVIG-TGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 24 DVvVIG-aGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
.|.||| +|.-|.+.|..|+++|++|.++.++.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 489997 79999999999999999999997654
No 436
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=90.90 E-value=0.4 Score=39.60 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=29.7
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCe-EEEEccC
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKS-VLHLDPN 54 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~-VlvlE~~ 54 (407)
...|+|||+|=+|-.++..|++.|.+ |+|+-|+
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 45799999999999999999999987 9999865
No 437
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=90.88 E-value=0.29 Score=50.01 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
-.|.|||+|..|...|..|+++|+.|+++|++..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3589999999999999999999999999998765
No 438
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=90.83 E-value=0.26 Score=53.03 Aligned_cols=34 Identities=18% Similarity=0.099 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCe-EEEEccCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNPF 56 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~-VlvlE~~~~ 56 (407)
-.|||||+|..|+-+|..|.+.|.+ |++++++++
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~ 605 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE 605 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 4799999999999999999999987 999998865
No 439
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.80 E-value=0.24 Score=52.86 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
-.|.|||||..|.-.|..++++|++|+++|.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4599999999999999999999999999998854
No 440
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.78 E-value=0.3 Score=49.77 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=29.4
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~ 54 (407)
.|+|+|.|.+|++++..|.+.|.+|++.|.+
T Consensus 14 ~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 14 PVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 5999999999999999999999999999965
No 441
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.76 E-value=0.31 Score=47.26 Aligned_cols=39 Identities=26% Similarity=0.326 Sum_probs=34.6
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCC-CeEEEEccCCCC
Q 015413 19 EPTAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFY 57 (407)
Q Consensus 19 ~~~~~DVvVIGaGl~GL~aA~~La~~G-~~VlvlE~~~~~ 57 (407)
++..+|+|.||-|..-|..|+.|+..+ .+++.||+....
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 456799999999999999999999875 889999998763
No 442
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=90.73 E-value=0.38 Score=42.68 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=29.9
Q ss_pred cccEEEECCChhHHHHHHHHhhCCC-eEEEEccC
Q 015413 22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPN 54 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~ 54 (407)
...|+|||+|--|..+|..|+++|. +++++|..
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4579999999999999999999998 69988875
No 443
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=90.62 E-value=0.35 Score=46.00 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHhhCC--CeEEEEccCCC
Q 015413 24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPF 56 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G--~~VlvlE~~~~ 56 (407)
.|+|||+|..|.++|..|+..| .++.++|++..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 4899999999999999999999 58999999754
No 444
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=90.46 E-value=0.94 Score=41.91 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=41.6
Q ss_pred chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeC-----------CCcEEEcCEEE
Q 015413 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-----------SGQDILSHKLV 331 (407)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-----------~G~~i~Ad~VI 331 (407)
.++.+.|.+.+...|+++++++.|..+..+ +++++.+|.+. +..+++|+.||
T Consensus 104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~-~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI 166 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILR-EDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVV 166 (257)
T ss_pred HHHHHHHHHHHHHcCCEEEcCceeceeeEe-CCCcEEEEEEccccccccCCCCCcEEEEcCEEE
Confidence 577888988889999999999999999876 24477777643 12468999999
No 445
>PRK06847 hypothetical protein; Provisional
Probab=90.45 E-value=0.89 Score=44.30 Aligned_cols=51 Identities=18% Similarity=0.131 Sum_probs=41.9
Q ss_pred chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (407)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (407)
..+.+.|.+.+...|++|+++++|++|..+ ++. +.|++.+|+++.||.||.
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-~~v~~~~g~~~~ad~vI~ 157 (375)
T PRK06847 107 PALARILADAARAAGADVRLGTTVTAIEQD--DDG-VTVTFSDGTTGRYDLVVG 157 (375)
T ss_pred HHHHHHHHHHHHHhCCEEEeCCEEEEEEEc--CCE-EEEEEcCCCEEEcCEEEE
Confidence 467788888888889999999999999875 444 467778999999999994
No 446
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=90.44 E-value=0.3 Score=48.63 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=33.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (407)
...|.|+|-|.+|++||..|.+.|.+|++.|.+...
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 357999999999999999999999999999987766
No 447
>PRK06223 malate dehydrogenase; Reviewed
Probab=90.43 E-value=0.39 Score=45.65 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC-eEEEEccCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF 56 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~~ 56 (407)
..|.|||+|..|.+.|..|+..|. .|.++|.+..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 479999999999999999999876 9999998654
No 448
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=90.41 E-value=0.3 Score=49.55 Aligned_cols=34 Identities=29% Similarity=0.444 Sum_probs=30.8
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
.-.|+|+|+|..||.|+..+...|.+|.++|.++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3579999999999999999999999999988775
No 449
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=90.38 E-value=0.73 Score=46.16 Aligned_cols=53 Identities=25% Similarity=0.298 Sum_probs=42.6
Q ss_pred chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeC--CCc--EEEcCEEEE
Q 015413 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SGQ--DILSHKLVL 332 (407)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~--~G~--~i~Ad~VI~ 332 (407)
..+.+.|.+.+++.|++++++++|++|+.+ +++++++|++. +++ .+.||.||+
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~-~~g~v~Gv~~~~~~g~~~~~~a~~VVl 186 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQD-DQGTVVGVVVKGKGKGIYIKAAKAVVL 186 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEEC-CCCcEEEEEEEeCCCeEEEEecceEEE
Confidence 468899999999999999999999999986 36778887653 343 368999983
No 450
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=90.33 E-value=0.33 Score=46.06 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=28.6
Q ss_pred EEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 015413 25 LIVIGTGLPESVISAAASASGK-SVLHLDPNP 55 (407)
Q Consensus 25 VvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~ 55 (407)
|.|||+|..|...|..|+..|. +|.++|.+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5799999999999999999887 999999985
No 451
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=90.31 E-value=0.1 Score=47.80 Aligned_cols=96 Identities=14% Similarity=0.065 Sum_probs=64.6
Q ss_pred ecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCc-EEEcCEEEE-CCCCCCCCCCccchhhhhh
Q 015413 274 PIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-DILSHKLVL-DPSFTVPGSLASSHQQLQE 351 (407)
Q Consensus 274 p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~-~i~Ad~VI~-~p~~~~~~~~~~~~p~lp~ 351 (407)
-.-||..|++.|+. .-+|+++++|++|... + +-+.+.+++|. ...+|.||+ .|..-...+.....-.+|.
T Consensus 103 g~pgmsalak~LAt-----dL~V~~~~rVt~v~~~--~-~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~ 174 (331)
T COG3380 103 GEPGMSALAKFLAT-----DLTVVLETRVTEVART--D-NDWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPA 174 (331)
T ss_pred cCcchHHHHHHHhc-----cchhhhhhhhhhheec--C-CeeEEEecCCCcccccceEEEecCCCcchhhcCcccccchH
Confidence 34589999886653 3478999999999885 3 33789886664 468999884 4444333332122346788
Q ss_pred hhhhhcccCCCceEEEEEEEeCCCCC
Q 015413 352 SFQAFSLSDNKGKVARGICITRSSLK 377 (407)
Q Consensus 352 ~~~~~~~~~~~g~~~k~i~i~~~p~~ 377 (407)
.+++-.....|-++.-+++-|..|+.
T Consensus 175 ~l~~~~a~V~y~Pc~s~~lg~~q~l~ 200 (331)
T COG3380 175 ALRAALADVVYAPCWSAVLGYPQPLD 200 (331)
T ss_pred HHHHhhccceehhHHHHHhcCCccCC
Confidence 76666566667777777888887654
No 452
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=90.23 E-value=0.33 Score=45.71 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
.|.|||.|..|...|..|+++|++|++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 37899999999999999999999999999874
No 453
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=90.21 E-value=0.33 Score=51.76 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
-.|.|||||..|...|..++.+|++|+++|.+..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998754
No 454
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=90.19 E-value=0.37 Score=45.54 Aligned_cols=32 Identities=28% Similarity=0.327 Sum_probs=30.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~ 54 (407)
..|.|||||.-|--.|..++.+|++|++.|.+
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 46899999999999999999988999999998
No 455
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=90.16 E-value=0.92 Score=33.45 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=33.9
Q ss_pred cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCC
Q 015413 278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG 322 (407)
Q Consensus 278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G 322 (407)
-..+.+.+.+..+..|.++++++.|++|..+ +++ +. |+++||
T Consensus 39 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~~~-~~-V~~~~g 80 (80)
T PF00070_consen 39 DPDAAKILEEYLRKRGVEVHTNTKVKEIEKD-GDG-VE-VTLEDG 80 (80)
T ss_dssp SHHHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTS-EE-EEEETS
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEe-CCE-EE-EEEecC
Confidence 3566777778888999999999999999987 244 54 888876
No 456
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=90.12 E-value=0.45 Score=44.17 Aligned_cols=39 Identities=18% Similarity=0.231 Sum_probs=33.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCC-CeEEEEccCCCCCCc
Q 015413 22 AFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSH 60 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G-~~VlvlE~~~~~GG~ 60 (407)
...|+|||.|-.|..+|..|+++| .+++++|....--..
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sN 69 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTN 69 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccc
Confidence 357999999999999999999999 799999976554333
No 457
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.01 E-value=0.43 Score=47.96 Aligned_cols=38 Identities=16% Similarity=0.137 Sum_probs=33.5
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 18 ~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
++..+--|+|||.|-+|.++|..|.+.|++|.+.|.++
T Consensus 2 ~~~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 2 LMQSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred ccccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 44555669999999999999999999999999999865
No 458
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=89.97 E-value=1 Score=45.86 Aligned_cols=62 Identities=13% Similarity=0.117 Sum_probs=44.0
Q ss_pred cceEeecCC---cchHHHHHHHHHHh-cCcEEEeCCceeEEEEecCCCcEEEEE---eCCCc--EEEcCEEEE
Q 015413 269 GALIYPIYG---QGELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVR---LASGQ--DILSHKLVL 332 (407)
Q Consensus 269 ~~~~~p~gG---~~~l~~al~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~---~~~G~--~i~Ad~VI~ 332 (407)
++.+.|.++ ...+.++|++.+.. .|++++++++|+.|..+. ++. +.|+ +.+|+ +++||.||+
T Consensus 171 ~Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~-d~~-w~v~v~~t~~g~~~~i~Ad~VV~ 241 (497)
T PRK13339 171 AASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLS-DGG-WEVTVKDRNTGEKREQVADYVFI 241 (497)
T ss_pred eEEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECC-CCC-EEEEEEecCCCceEEEEcCEEEE
Confidence 345566665 46888999998854 589999999999998641 333 3444 33443 699999984
No 459
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=89.94 E-value=1 Score=44.32 Aligned_cols=51 Identities=24% Similarity=0.169 Sum_probs=42.0
Q ss_pred chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (407)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (407)
..+.+.|.+.+...|++++.+++|++|..+ ++. +.|++++|++++||.||.
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-v~v~~~~g~~~~ad~vI~ 161 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETR--DEG-VTVTLSDGSVLEARLLVA 161 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEc--CCE-EEEEECCCCEEEeCEEEE
Confidence 467788888888889999999999999875 444 467778898999999993
No 460
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=89.86 E-value=1.2 Score=43.56 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=32.2
Q ss_pred cEEEECCChhHHHHHHHHhhCC-CeEEEEccCCCC
Q 015413 24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPFY 57 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G-~~VlvlE~~~~~ 57 (407)
||+|||||++||++|..|+++| ++|+|+|+++..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~ 35 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS 35 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence 8999999999999999999999 999999998653
No 461
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.76 E-value=0.37 Score=47.97 Aligned_cols=33 Identities=21% Similarity=0.351 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
-.|.|||-|.+|.++|..|.+.|++|.+.|.+.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~ 36 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL 36 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 469999999999999999999999999999764
No 462
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=89.75 E-value=1 Score=43.84 Aligned_cols=53 Identities=25% Similarity=0.224 Sum_probs=42.6
Q ss_pred chHHHHHHHHHHhcC-cEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-ECC
Q 015413 279 GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP 334 (407)
Q Consensus 279 ~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~p 334 (407)
..+-+.|.+.+.+.| ++|+.+++|++|..+ ++. +.|++.+|++++||.|| ++.
T Consensus 106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~--~~~-~~v~~~~g~~~~~~~vi~adG 160 (385)
T TIGR01988 106 RVLQQALWERLQEYPNVTLLCPARVVELPRH--SDH-VELTLDDGQQLRARLLVGADG 160 (385)
T ss_pred HHHHHHHHHHHHhCCCcEEecCCeEEEEEec--CCe-eEEEECCCCEEEeeEEEEeCC
Confidence 467788888887887 999999999999875 444 46777899899999999 443
No 463
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=89.71 E-value=0.96 Score=44.51 Aligned_cols=33 Identities=21% Similarity=0.389 Sum_probs=32.0
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~ 54 (407)
.+||+|||||++||++|..|+++|++|+|+|++
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 479999999999999999999999999999998
No 464
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=89.62 E-value=0.41 Score=45.31 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=30.0
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
+|.|||.|.-|...|..|+++|++|.+++++.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 68999999999999999999999999999864
No 465
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=89.43 E-value=0.54 Score=50.32 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
..|.|||+|..|...|..++.+|++|+++|.++.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~ 369 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA 369 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence 4699999999999999999999999999998764
No 466
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=89.38 E-value=0.5 Score=44.70 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=31.5
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
...|+|||.|-.|..+|..|.+.|.+|.+++++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3579999999999999999999999999999884
No 467
>PRK07045 putative monooxygenase; Reviewed
Probab=89.24 E-value=1.3 Score=43.41 Aligned_cols=53 Identities=17% Similarity=0.292 Sum_probs=41.8
Q ss_pred hHHHHHHHHHH-hcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-EC
Q 015413 280 ELPQAFCRRAA-VKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LD 333 (407)
Q Consensus 280 ~l~~al~r~~~-~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~ 333 (407)
.|-+.|.+.++ ..|+++++++.|+.|+.+ +++.++.|++++|++++||.|| ++
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~-~~~~~~~v~~~~g~~~~~~~vIgAD 161 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERD-ADGTVTSVTLSDGERVAPTVLVGAD 161 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEEC-CCCcEEEEEeCCCCEEECCEEEECC
Confidence 56666776664 467999999999999986 3555567888899999999999 44
No 468
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=89.23 E-value=1.5 Score=40.40 Aligned_cols=54 Identities=19% Similarity=0.137 Sum_probs=42.5
Q ss_pred chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCC--cEEEEEeCC-----------CcEEEcCEEE-ECC
Q 015413 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSG--SYKGVRLAS-----------GQDILSHKLV-LDP 334 (407)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g--~~~gV~~~~-----------G~~i~Ad~VI-~~p 334 (407)
.++.+.|.+.+.+.|++++.++.|+.+..+ ++ ++.||.+.. ..+++|+.|| ++.
T Consensus 100 ~el~~~L~~~a~e~GV~I~~~t~V~dli~~--~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG 167 (254)
T TIGR00292 100 AEFISTLASKALQAGAKIFNGTSVEDLITR--DDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATG 167 (254)
T ss_pred HHHHHHHHHHHHHcCCEEECCcEEEEEEEe--CCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeec
Confidence 477788888888899999999999999886 44 678887532 2468999999 444
No 469
>PRK10015 oxidoreductase; Provisional
Probab=89.17 E-value=1.2 Score=44.46 Aligned_cols=50 Identities=18% Similarity=0.298 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (407)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (407)
.+-+.|.+.+++.|++++.++.|+.|..+ ++++++|. .++.+++||.||.
T Consensus 109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~--~~~v~~v~-~~~~~i~A~~VI~ 158 (429)
T PRK10015 109 RLDPWLMEQAEQAGAQFIPGVRVDALVRE--GNKVTGVQ-AGDDILEANVVIL 158 (429)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEe--CCEEEEEE-eCCeEEECCEEEE
Confidence 34455777788899999999999999875 56766776 4566899999994
No 470
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=89.15 E-value=0.5 Score=46.71 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
-.|+|+|+|.-|+.+|..|...|.+|+++|.++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 479999999999999999999999999999875
No 471
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=89.14 E-value=1.3 Score=43.80 Aligned_cols=51 Identities=14% Similarity=0.105 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-EC
Q 015413 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LD 333 (407)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~ 333 (407)
.+-++|.+.++..|.+|+.+++|++|+.+ ++. +.|++++|++++||.|| ++
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-v~v~~~~g~~~~a~~vVgAd 164 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRS--GDD-WLLTLADGRQLRAPLVVAAD 164 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEc--CCe-EEEEECCCCEEEeCEEEEec
Confidence 56677777777789999999999999875 343 46777889899999999 54
No 472
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=89.14 E-value=0.46 Score=52.28 Aligned_cols=34 Identities=21% Similarity=0.160 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
-+|||||+|..|+-+|..+.+.|.+|+++.++++
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~ 481 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTK 481 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCc
Confidence 4799999999999999999999999999998754
No 473
>PRK06834 hypothetical protein; Provisional
Probab=89.10 E-value=1.3 Score=45.14 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=41.3
Q ss_pred chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-EC
Q 015413 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LD 333 (407)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~ 333 (407)
..+-+.|.+.++..|++|+.+++|++|+.+ ++. +.|++.+|++++||.|| ++
T Consensus 100 ~~le~~L~~~l~~~gv~i~~~~~v~~v~~~--~~~-v~v~~~~g~~i~a~~vVgAD 152 (488)
T PRK06834 100 NHIERILAEWVGELGVPIYRGREVTGFAQD--DTG-VDVELSDGRTLRAQYLVGCD 152 (488)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEc--CCe-EEEEECCCCEEEeCEEEEec
Confidence 346667777778889999999999999986 443 45777788899999999 54
No 474
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=89.02 E-value=0.64 Score=42.69 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
..++|+|+|+-+...|..++..|++|+|+|.+..
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 5799999999999999999999999999997755
No 475
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=88.95 E-value=0.67 Score=44.38 Aligned_cols=35 Identities=17% Similarity=0.127 Sum_probs=31.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC-eEEEEccCCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFY 57 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~~~ 57 (407)
..|+|||+|..|.+.|..|+..|. +|.++|.+...
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~ 42 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI 42 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence 579999999999999999999996 99999987764
No 476
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=88.93 E-value=1.3 Score=45.88 Aligned_cols=53 Identities=21% Similarity=0.299 Sum_probs=42.3
Q ss_pred cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeC-CCc--EEEcC-EEEE
Q 015413 278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILSH-KLVL 332 (407)
Q Consensus 278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~--~i~Ad-~VI~ 332 (407)
-..|.+.|.+.+++.|++|+++++|++|+.+ +++++||... +|+ ++.|+ .||+
T Consensus 207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~g~~~~i~A~~aVIl 263 (557)
T PRK12844 207 GAALIGRMLEAALAAGVPLWTNTPLTELIVE--DGRVVGVVVVRDGREVLIRARRGVLL 263 (557)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEEEECCeEEEEEecceEEE
Confidence 3567888888889999999999999999986 7889998753 454 37885 5773
No 477
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=88.84 E-value=1.2 Score=46.42 Aligned_cols=52 Identities=27% Similarity=0.402 Sum_probs=42.1
Q ss_pred chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCC--Cc-EEEcC-EEEE
Q 015413 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS--GQ-DILSH-KLVL 332 (407)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~--G~-~i~Ad-~VI~ 332 (407)
.+|.++|.+.+++.|++|+++++|+++..+ ++++++|.+.+ ++ ++.|+ .||+
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~--~g~V~GV~~~~~~~~~~i~a~k~VVl 269 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTE--GGRVVGARVIDAGGERRITARRGVVL 269 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEee--CCEEEEEEEEcCCceEEEEeCCEEEE
Confidence 678889998889999999999999999986 78888887643 33 37886 5773
No 478
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=88.78 E-value=1 Score=44.48 Aligned_cols=41 Identities=17% Similarity=0.363 Sum_probs=34.5
Q ss_pred CCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 15 YPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 15 ~~~~~~~~~DVvVIGa-Gl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
+.+.+.....|+|+|| |.-|..++..|.++|++|.++.++.
T Consensus 53 ~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~ 94 (390)
T PLN02657 53 FRSKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK 94 (390)
T ss_pred ccccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence 4455555667999997 9999999999999999999998764
No 479
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=88.71 E-value=2.2 Score=42.19 Aligned_cols=37 Identities=32% Similarity=0.442 Sum_probs=34.5
Q ss_pred EEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413 26 IVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (407)
Q Consensus 26 vVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (407)
||||||.+||+||+.|+++|++|+|||+++.+|+.+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~ 37 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLL 37 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCcccccccc
Confidence 6999999999999999999999999999999987653
No 480
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=88.69 E-value=1 Score=33.85 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=29.0
Q ss_pred cccEEEECCChhHHHHHHHHhhC-CCeEEEEcc
Q 015413 22 AFDLIVIGTGLPESVISAAASAS-GKSVLHLDP 53 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~-G~~VlvlE~ 53 (407)
...++|+|+|-.|..+|..|.+. +.+|.++++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 35699999999999999999998 789999988
No 481
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.68 E-value=0.48 Score=47.73 Aligned_cols=31 Identities=16% Similarity=0.102 Sum_probs=28.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~ 54 (407)
-.|+|+|.|.+|.+||..|.+ |.+|+|.|.+
T Consensus 7 ~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 7 QKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 369999999999999999995 9999999965
No 482
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.65 E-value=0.51 Score=48.21 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
.|.|+|.|.+|+++|..|.+.|++|.+.|.+.
T Consensus 9 ~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 9 MVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred EEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 59999999999999999999999999999765
No 483
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=88.65 E-value=0.57 Score=44.24 Aligned_cols=32 Identities=28% Similarity=0.382 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
+|.|||.|..|...|..|++.|++|++++++.
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~ 35 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP 35 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 69999999999999999999999999998864
No 484
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=88.58 E-value=1.5 Score=40.71 Aligned_cols=51 Identities=12% Similarity=0.129 Sum_probs=38.5
Q ss_pred chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeC-CCcEEEcCEEEE
Q 015413 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQDILSHKLVL 332 (407)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~~i~Ad~VI~ 332 (407)
..+-+.|.+.+++.|+++++++.|+++..+ ++++ .|.+. ++.+++||.||.
T Consensus 91 ~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~--~~~~-~~~~~~~~~~~~a~~vv~ 142 (295)
T TIGR02032 91 DAFDEQLAERAQEAGAELRLGTTVLDVEIH--DDRV-VVIVRGGEGTVTAKIVIG 142 (295)
T ss_pred HHHHHHHHHHHHHcCCEEEeCcEEeeEEEe--CCEE-EEEEcCccEEEEeCEEEE
Confidence 356677788888899999999999999886 4443 34333 456799999983
No 485
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=88.55 E-value=0.49 Score=47.77 Aligned_cols=34 Identities=12% Similarity=0.092 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
.+|.|||.|..|...|..|+++|++|.+.+++..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~ 35 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE 35 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 4799999999999999999999999999998654
No 486
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=88.41 E-value=0.48 Score=50.44 Aligned_cols=34 Identities=26% Similarity=0.313 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHh-hCCCeEEEEccCCC
Q 015413 23 FDLIVIGTGLPESVISAAAS-ASGKSVLHLDPNPF 56 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La-~~G~~VlvlE~~~~ 56 (407)
-.|.|||||..|...|..++ ++|++|+++|.++.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~ 339 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ 339 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 46999999999999999998 69999999998853
No 487
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=88.30 E-value=0.88 Score=38.15 Aligned_cols=33 Identities=12% Similarity=0.303 Sum_probs=29.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCC-CeEEEEccCC
Q 015413 23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPNP 55 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G-~~VlvlE~~~ 55 (407)
-.++|||+|..|...|..|++.| ++|.+++++.
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 46999999999999999999996 8999998764
No 488
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=88.26 E-value=0.68 Score=43.53 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=29.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP 55 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~ 55 (407)
..|+|||+|-+|-++|..|++.|. +|+|++++.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 469999999999999999999996 799998863
No 489
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=88.25 E-value=1.5 Score=45.55 Aligned_cols=52 Identities=15% Similarity=0.297 Sum_probs=43.3
Q ss_pred chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 015413 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (407)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~Ad~VI~ 332 (407)
..|.++|.+.+...|++|+.+++|++++++ +|+++||.. .+|+ .+.|+.||+
T Consensus 119 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~--~g~v~Ga~~~~~~~g~~~~i~AkaVIL 175 (565)
T TIGR01816 119 HAILHTLYQQNLKADTSFFNEYFALDLLME--DGECRGVIAYCLETGEIHRFRAKAVVL 175 (565)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEee--CCEEEEEEEEEcCCCcEEEEEeCeEEE
Confidence 368889988888899999999999999986 789999864 2454 479999994
No 490
>PRK06175 L-aspartate oxidase; Provisional
Probab=88.25 E-value=1.7 Score=43.58 Aligned_cols=52 Identities=12% Similarity=0.254 Sum_probs=40.3
Q ss_pred chHHHHHHHHHHh-cCcEEEeCCceeEEEEecCCCcEEEEE-eCCCc--EEEcCEEEE
Q 015413 279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVR-LASGQ--DILSHKLVL 332 (407)
Q Consensus 279 ~~l~~al~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~-~~~G~--~i~Ad~VI~ 332 (407)
.++.++|.+.+++ .|++|+++++|++|..+ ++++++|. ..+++ ++.|+.||+
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~--~~~v~Gv~~~~~g~~~~i~Ak~VIL 183 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIEN--DNTCIGAICLKDNKQINIYSKVTIL 183 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEec--CCEEEEEEEEECCcEEEEEcCeEEE
Confidence 4678888877764 59999999999999876 67888865 33454 589999994
No 491
>PLN02256 arogenate dehydrogenase
Probab=88.14 E-value=0.75 Score=43.70 Aligned_cols=34 Identities=15% Similarity=0.244 Sum_probs=30.8
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
...+.|||.|..|-..|..|+++|++|.+++++.
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~ 69 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD 69 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence 4579999999999999999999999999999874
No 492
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=88.10 E-value=0.49 Score=47.76 Aligned_cols=33 Identities=15% Similarity=0.068 Sum_probs=30.5
Q ss_pred cEEEECCChhHHH-HHHHHhhCCCeEEEEccCCC
Q 015413 24 DLIVIGTGLPESV-ISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 24 DVvVIGaGl~GL~-aA~~La~~G~~VlvlE~~~~ 56 (407)
.|.|||.|-+|++ +|..|.+.|++|.+.|.+..
T Consensus 9 ~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 9 RIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred EEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 5999999999999 59999999999999998764
No 493
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=88.08 E-value=1.7 Score=45.16 Aligned_cols=52 Identities=25% Similarity=0.363 Sum_probs=41.1
Q ss_pred chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeC-CCc--EEEcC-EEEE
Q 015413 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILSH-KLVL 332 (407)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~--~i~Ad-~VI~ 332 (407)
..+...|.+.++..|++|+++++|++|+.+ ++++++|... +|+ +++|+ .||+
T Consensus 208 ~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~--~g~v~Gv~~~~~g~~~~i~A~~~VIl 263 (557)
T PRK07843 208 QALAAGLRIGLQRAGVPVLLNTPLTDLYVE--DGRVTGVHAAESGEPQLIRARRGVIL 263 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCEEEEEEEe--CCEEEEEEEEeCCcEEEEEeceeEEE
Confidence 457778888888899999999999999986 6888888754 454 37897 4774
No 494
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=88.04 E-value=0.93 Score=39.84 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=29.3
Q ss_pred cccEEEECC-ChhHHHHHHHHhhCCCeEEEEccC
Q 015413 22 AFDLIVIGT-GLPESVISAAASASGKSVLHLDPN 54 (407)
Q Consensus 22 ~~DVvVIGa-Gl~GL~aA~~La~~G~~VlvlE~~ 54 (407)
...++|+|+ |-.|..+|..|++.|++|.++.++
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 357999996 999999999999999999999765
No 495
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=88.01 E-value=0.52 Score=47.55 Aligned_cols=34 Identities=21% Similarity=0.061 Sum_probs=31.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (407)
-+|+|||+|.+|+-.|..|++.+++|+++.++..
T Consensus 205 k~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~ 238 (461)
T PLN02172 205 EVVVVIGNFASGADISRDIAKVAKEVHIASRASE 238 (461)
T ss_pred CEEEEECCCcCHHHHHHHHHHhCCeEEEEEeecc
Confidence 4699999999999999999999999999988653
No 496
>PRK12839 hypothetical protein; Provisional
Probab=87.98 E-value=1.5 Score=45.52 Aligned_cols=53 Identities=28% Similarity=0.365 Sum_probs=40.8
Q ss_pred chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeC--CCc-EEE-cCEEEE
Q 015413 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SGQ-DIL-SHKLVL 332 (407)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~--~G~-~i~-Ad~VI~ 332 (407)
..|...|.+.+.+.|++|+++++|++|..+ ++|+++||... +|+ ++. ++.||+
T Consensus 214 ~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~-~~g~V~GV~~~~~~g~~~i~aak~VVL 270 (572)
T PRK12839 214 TALTGRLLRSADDLGVDLRVSTSATSLTTD-KNGRVTGVRVQGPDGAVTVEATRGVVL 270 (572)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEEC-CCCcEEEEEEEeCCCcEEEEeCCEEEE
Confidence 467788888888999999999999999875 36888898643 444 244 477884
No 497
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=87.73 E-value=0.61 Score=49.76 Aligned_cols=33 Identities=30% Similarity=0.321 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHHh-hCCCeEEEEccCC
Q 015413 23 FDLIVIGTGLPESVISAAAS-ASGKSVLHLDPNP 55 (407)
Q Consensus 23 ~DVvVIGaGl~GL~aA~~La-~~G~~VlvlE~~~ 55 (407)
-.|.|||||..|...|..++ ++|+.|+++|.+.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 45999999999999999998 8999999999865
No 498
>PRK07190 hypothetical protein; Provisional
Probab=87.71 E-value=1.7 Score=44.17 Aligned_cols=51 Identities=14% Similarity=0.163 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-EC
Q 015413 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LD 333 (407)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~ 333 (407)
.+-+.|.+.++..|++|+.++.|++|.++ ++. +.|.+.+|++++|+.|| ++
T Consensus 110 ~le~~L~~~~~~~Gv~v~~~~~v~~l~~~--~~~-v~v~~~~g~~v~a~~vVgAD 161 (487)
T PRK07190 110 YVEKLLDDKLKEAGAAVKRNTSVVNIELN--QAG-CLTTLSNGERIQSRYVIGAD 161 (487)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEc--CCe-eEEEECCCcEEEeCEEEECC
Confidence 45556666777889999999999999986 333 34556788899999999 44
No 499
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=87.70 E-value=1.1 Score=44.13 Aligned_cols=35 Identities=9% Similarity=0.187 Sum_probs=32.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCC--CeEEEEccCCC
Q 015413 22 AFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPF 56 (407)
Q Consensus 22 ~~DVvVIGaGl~GL~aA~~La~~G--~~VlvlE~~~~ 56 (407)
+..+||||||.+||.+|..|+++- .+|+++|++++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~ 39 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY 39 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCc
Confidence 357999999999999999999984 99999999987
No 500
>PLN02712 arogenate dehydrogenase
Probab=87.61 E-value=1 Score=47.65 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=31.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (407)
Q Consensus 21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (407)
....|.|||.|.-|-..|..|.++|++|+++++++
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~ 85 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSD 85 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 34579999999999999999999999999998864
Done!