Query 015414
Match_columns 407
No_of_seqs 276 out of 1808
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 06:05:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015414.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015414hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4567 GTPase-activating prot 100.0 2.7E-44 5.8E-49 326.1 22.6 296 39-362 11-352 (370)
2 KOG2058 Ypt/Rab GTPase activat 100.0 4E-43 8.6E-48 340.7 19.8 239 52-362 146-387 (436)
3 smart00164 TBC Domain in Tre-2 100.0 1.4E-40 3.1E-45 300.7 17.5 195 60-322 1-198 (199)
4 KOG2197 Ypt/Rab-specific GTPas 100.0 5.2E-37 1.1E-41 307.1 19.3 378 12-403 25-459 (488)
5 KOG1092 Ypt/Rab-specific GTPas 100.0 7E-37 1.5E-41 287.9 17.7 236 50-342 176-438 (484)
6 KOG2223 Uncharacterized conser 100.0 1.6E-35 3.6E-40 278.6 20.8 244 39-342 276-524 (586)
7 COG5210 GTPase-activating prot 100.0 2.2E-35 4.8E-40 301.0 19.5 253 36-357 182-442 (496)
8 KOG2224 Uncharacterized conser 100.0 5.5E-35 1.2E-39 274.8 17.5 286 22-357 390-712 (781)
9 PF00566 RabGAP-TBC: Rab-GTPas 100.0 2.6E-33 5.6E-38 255.8 22.2 168 172-342 46-214 (214)
10 KOG2222 Uncharacterized conser 100.0 6.8E-31 1.5E-35 249.8 16.3 267 51-395 158-437 (848)
11 KOG1093 Predicted protein kina 100.0 1.6E-28 3.5E-33 238.9 15.3 191 172-363 390-583 (725)
12 KOG4347 GTPase-activating prot 100.0 1.1E-28 2.4E-33 244.0 11.3 247 39-357 175-424 (671)
13 KOG1091 Ypt/Rab-specific GTPas 99.9 1.7E-27 3.7E-32 231.7 15.0 257 66-356 27-344 (625)
14 KOG4436 Predicted GTPase activ 99.9 1E-25 2.3E-30 226.2 21.4 189 163-355 612-804 (948)
15 KOG2595 Predicted GTPase activ 99.9 5.7E-25 1.2E-29 202.5 10.0 178 172-353 96-278 (395)
16 KOG1102 Rab6 GTPase activator 99.9 3E-24 6.5E-29 211.6 13.6 264 21-358 90-368 (397)
17 KOG2221 PDZ-domain interacting 99.9 8.6E-23 1.9E-27 177.3 3.7 190 36-297 74-267 (267)
18 KOG3636 Uncharacterized conser 99.8 4.1E-20 8.9E-25 175.5 11.3 215 174-397 68-288 (669)
19 KOG4436 Predicted GTPase activ 99.5 5.1E-14 1.1E-18 142.7 13.2 212 55-333 176-397 (948)
20 KOG1648 Uncharacterized conser 99.3 1.7E-13 3.6E-18 132.2 -1.4 227 23-321 519-745 (813)
21 KOG2801 Probable Rab-GAPs [Int 98.0 8.9E-05 1.9E-09 68.3 12.4 138 194-333 109-248 (559)
22 PF14961 BROMI: Broad-minded p 96.4 0.15 3.2E-06 56.3 16.5 185 201-397 1088-1290(1296)
23 KOG2197 Ypt/Rab-specific GTPas 84.0 0.58 1.3E-05 47.9 1.8 75 35-110 148-223 (488)
24 KOG2224 Uncharacterized conser 83.9 0.38 8.2E-06 47.2 0.4 33 213-245 566-598 (781)
25 PF10815 ComZ: ComZ; InterPro 38.9 42 0.00092 23.1 2.9 40 266-305 5-44 (56)
26 PF08109 Antimicrobial14: Lact 32.5 33 0.00071 19.9 1.4 14 213-226 3-16 (31)
27 KOG4631 NADH:ubiquinone oxidor 32.2 36 0.00078 26.1 2.0 26 52-77 25-51 (100)
28 PF03556 Cullin_binding: Culli 21.2 1.9E+02 0.0042 23.4 4.6 31 291-321 27-57 (117)
No 1
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=2.7e-44 Score=326.15 Aligned_cols=296 Identities=25% Similarity=0.399 Sum_probs=231.9
Q ss_pred HHHhhcCCC-CCccHHHHHHHHhhCCCC--CCchHhhhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccC
Q 015414 39 KWQAAFTPE-GQLDIGKTLSRIHRGGIH--PSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVG 115 (407)
Q Consensus 39 ~W~~~~~~~-~~i~~~~~l~~~~~~GIp--~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~ 115 (407)
..++.+.+. ..+|..+ ++.++..|+| .++|+.+|++|||++|+.. ..|...+.+.|+.|...+++.. ..+|
T Consensus 11 ~~edvl~~~~~~id~ke-lr~~~~~g~p~~~~lR~~~WkllL~Yl~~er--~~w~s~La~~R~~Y~q~i~e~v---~epg 84 (370)
T KOG4567|consen 11 SIEDVLNPADDTIDLKE-LRKLCFYGVPDDASLRPLVWKLLLGYLPPER--SKWTSFLAKKRSLYKQFIEEIV---DEPG 84 (370)
T ss_pred hHHHhhccccchhhHHH-HHHHhhcCCCCccchhHhHHHHHHhhcChhh--hhhHHHHHHHHHHHHHHHHHhc---cCcc
Confidence 444555543 3378888 8888899999 7999999999999999988 5677899999999999887643 2222
Q ss_pred CCcccccccccCCCCCCCCcccccccCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcCCCCCcccccCh--
Q 015414 116 SGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQ-- 193 (407)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~RT~~~~~~f~~~-- 193 (407)
....-.. ...+| ..-+.|. +.+ ..+.|.+.+++.+.+.||++||.||.|+..+|+..
T Consensus 85 ~~~~~~~-v~~~D-~~~dhPl-----------s~~--------~~sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~ 143 (370)
T KOG4567|consen 85 KKDNSKK-VDSND-TDEDHPL-----------SLG--------PTSDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASS 143 (370)
T ss_pred ccccccc-cccCc-ccccCCC-----------CCC--------chhhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccc
Confidence 1111000 00000 0011111 111 12347888999999999999999999999988652
Q ss_pred -h------------------------hHHHHHHHHHHHHhhCCCCCcCCChhHHHHHHHHhhc----------chhHHHH
Q 015414 194 -E------------------------NLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLE----------NEADAFW 238 (407)
Q Consensus 194 -~------------------------~~~~L~~iL~ay~~~~~~igY~QGm~~i~a~ll~~~~----------~E~~aF~ 238 (407)
+ ......|||..||..||.+||+||||+|+||+++++. .|+|||+
T Consensus 144 ~p~~~~~~~~~~i~~~q~~~~n~~gl~~~~~erilfiyAKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFF 223 (370)
T KOG4567|consen 144 YPCRQGMDSRRRINASQEAGRNRLGLTRFAAERILFIYAKLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFF 223 (370)
T ss_pred cccccchhhHhhhhhhhHhhhcccchhhhHHHHHHHHHhhcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHH
Confidence 1 1234578999999999999999999999999999984 3999999
Q ss_pred HHHHHHHhhccCccCC--CChhhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCCcchhHHHHHHhcccCCChHhHHHHHHH
Q 015414 239 CFERLMRRLRGNFRCT--ESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEM 316 (407)
Q Consensus 239 ~f~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~ll~~~dp~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~vlriWD~ 316 (407)
||..||..++++|..+ ++..|++..+..+..+|+.+|-+||.||++.++.|++|+++|+.+|++.+||+++|+||||.
T Consensus 224 CF~~LMseirDnf~k~LDdS~~GI~~~Msr~~~~lk~~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDs 303 (370)
T KOG4567|consen 224 CFTQLMSEIRDNFIKTLDDSVGGIHFLMSRLSELLKKHDEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDS 303 (370)
T ss_pred HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHH
Confidence 9999999999999754 45568888899999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhc--CChhhHHHHHHHHHhhhhhccCC--cchHHHHHhcCchhhhhh
Q 015414 317 MWALE--YDPHLFYLYEEAESAASTKSEGS--KAKAKSIRQCGKYERENM 362 (407)
Q Consensus 317 ~~~~~--~~~~~~~~~~~l~~~~~~~il~~--~~~~~~l~~~~~~~~~~~ 362 (407)
+|++. +.+.++++.++++.. |+.|+.. ...++.|++.|..+..++
T Consensus 304 l~sD~~rfd~Ll~iCcsmlil~-Re~il~~DF~~nmkLLQ~yp~tdi~~~ 352 (370)
T KOG4567|consen 304 LLSDPQRFDFLLYICCSMLILV-RERILEGDFTVNMKLLQNYPTTDISKM 352 (370)
T ss_pred HhcChhhhHHHHHHHHHHHHHH-HHHHHhcchHHHHHHHhcCCCCCHHHH
Confidence 99965 445778888888888 8888765 355777787777665555
No 2
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-43 Score=340.68 Aligned_cols=239 Identities=23% Similarity=0.343 Sum_probs=204.2
Q ss_pred HHHHHHHHhhCCCCCCchHhhhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcccccccccCCCCC
Q 015414 52 IGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGSGKFITAPVVTEDGQP 131 (407)
Q Consensus 52 ~~~~l~~~~~~GIp~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (407)
.++ ++.++++|||+++|+.||..+.|..... .....|+.++..-.. ++
T Consensus 146 s~e-lk~liRkGiP~~~R~~VW~~~~g~~~~~-----------~~~~~yq~ll~~~~~------------------~~-- 193 (436)
T KOG2058|consen 146 SDE-LKRLIRKGIPPELRGEVWWVLSGARRQL-----------NYPGYYQELLRKGDE------------------KK-- 193 (436)
T ss_pred cHH-HHHHHHcCCChhhhhHHHHHHhcchhhc-----------cCchhHHHHHhcCCC------------------cc--
Confidence 344 8999999999999999999999942111 115567777653110 00
Q ss_pred CCCcccccccCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcCCCCCc-ccccCh--hhHHHHHHHHHHHHh
Q 015414 132 IQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTL-VFYEKQ--ENLSKLWDILAVYAW 208 (407)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~RT~~~~-~~f~~~--~~~~~L~~iL~ay~~ 208 (407)
....+||+.|+.||||++ +.|..+ .++..|+|||.||+.
T Consensus 194 --------------------------------------~~~~~qI~~DL~RTfP~n~~~~~~~~~~~~~~LrRvL~Aya~ 235 (436)
T KOG2058|consen 194 --------------------------------------SPVVKQIKLDLPRTFPDNFKGFDSEDSDGRQTLRRVLLAYAR 235 (436)
T ss_pred --------------------------------------chHHHHHHhccccccCCCcccCCCCCchHHHHHHHHHHHHHh
Confidence 026789999999999999 788775 348999999999999
Q ss_pred hCCCCCcCCChhHHHHHHHHhhcchhHHHHHHHHHHHhhccCccCCCChhhHHHHHHHHHHHHHhhCHHHHHHHHhCCCC
Q 015414 209 VDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGG 288 (407)
Q Consensus 209 ~~~~igY~QGm~~i~a~ll~~~~~E~~aF~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~dp~L~~hl~~~~i~ 288 (407)
+||.||||||||++||++|+++++|++|||||+.+++++.+.|+ .+++.|.+....+|+.+++..+|+|+.||..++++
T Consensus 236 hNp~vGYCQGmNflAallLL~~~~EE~AFW~Lv~iie~~lp~Yy-t~nL~g~qvDQ~VL~~llre~lPkl~~~l~~~~~~ 314 (436)
T KOG2058|consen 236 HNPSVGYCQGMNFLAALLLLLMPSEEDAFWMLVALIENYLPRYY-TPNLIGSQVDQKVLRELLREKLPKLSLHLEGNGVD 314 (436)
T ss_pred hCCCCcchhhHHHHHHHHHHhcCChHHHHHHHHHHHHHhchhhc-CchhhhhhccHHHHHHHHHHHCHHHHHhhhhcCCC
Confidence 99999999999999999999998799999999999999888854 67899999999999999999999999999999999
Q ss_pred CcchhHHHHHHhcccCCChHhHHHHHHHHhhhcCChhhHHHHHHHHHhhhhhccCCcchHHHHHhcCchhhhhh
Q 015414 289 DYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYEEAESAASTKSEGSKAKAKSIRQCGKYERENM 362 (407)
Q Consensus 289 ~~~~~~~W~~tlF~~~l~~~~vlriWD~~~~~~~~~~~~~~~~~l~~~~~~~il~~~~~~~~l~~~~~~~~~~~ 362 (407)
..+++++||+|+|+..+|.++++||||++|.+|....+.++++++... +++++.+.+...+++.++.+.....
T Consensus 315 ~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eGskvlfr~Alai~k~~-ee~il~~~~~~~i~~~~~~~~~~~~ 387 (436)
T KOG2058|consen 315 ASLETLPWFLTLFVDILPSETVLRIWDCLFYEGSKVLFRVALAILKKH-EEEILKEDSSKEILRVLPDLTKRSI 387 (436)
T ss_pred eeeeehhhhHHHhcccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-HHHHhcCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999766655666666666 9999999999999999888765444
No 3
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=100.00 E-value=1.4e-40 Score=300.72 Aligned_cols=195 Identities=34% Similarity=0.620 Sum_probs=170.4
Q ss_pred hhCCCCCCchHhhhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcccccccccCCCCCCCCccccc
Q 015414 60 HRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGSGKFITAPVVTEDGQPIQDPLVLQ 139 (407)
Q Consensus 60 ~~~GIp~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (407)
+++|||+++|+.||+.++|+.+...+ ..+..|++++++....
T Consensus 1 ~~~Gip~~~R~~vW~~ll~~~~~~~~---------~~~~~Y~~l~~~~~~~----------------------------- 42 (199)
T smart00164 1 VRKGVPPSLRGVVWKLLLNAQPMDTS---------ADKDLYSRLLKETAPK----------------------------- 42 (199)
T ss_pred CCCCCCHHHHHHHHHHHhCCchhhhc---------ccchHHHHHHHhhcCC-----------------------------
Confidence 47899999999999999998765431 1245688887653210
Q ss_pred ccCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcCCCCCcccccCh--hhHHHHHHHHHHHHhhCCCCCcCC
Q 015414 140 ETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQ--ENLSKLWDILAVYAWVDRDVGYCQ 217 (407)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~RT~~~~~~f~~~--~~~~~L~~iL~ay~~~~~~igY~Q 217 (407)
+. ...++|++||.||+|++++|+.. .+++.|.|||.+|+.++|++||||
T Consensus 43 -----------------------~~------~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~~~~~~~p~~gY~Q 93 (199)
T smart00164 43 -----------------------DK------SIVHQIEKDLRRTFPEHSFFQDKEGPGQESLRRVLKAYALYNPEVGYCQ 93 (199)
T ss_pred -----------------------Ch------hhHHHHhcccCCCCCCchhhcCCCcccHHHHHHHHHHHHHHCCCCceec
Confidence 00 13578999999999999999863 689999999999999999999999
Q ss_pred ChhHHHHHHHHhhcchhHHHHHHHHHHHhhccCccCCCChhhHHHHHHHHHHHHHhhCHHHHHHHHh-CCCCCcchhHHH
Q 015414 218 GMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLET-LGGGDYLFAFRM 296 (407)
Q Consensus 218 Gm~~i~a~ll~~~~~E~~aF~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~dp~L~~hl~~-~~i~~~~~~~~W 296 (407)
||++|||+++.++.+|++|||+|+++|++..+.|+ .++.+++...+..++.+|+.++|+||+||++ .|+++.+|+.+|
T Consensus 94 Gm~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~~p~l~~~l~~~~~i~~~~~~~~W 172 (199)
T smart00164 94 GMNFLAAPLLLVMPDEEDAFWCLVKLMERYGPNFY-LPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDKLGIDPSLYALRW 172 (199)
T ss_pred cHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCcccC-CCChHHHHHHHHHHHHHHHHHCHHHHHHHHHhcCCCchhHHHHH
Confidence 99999999999997899999999999999877764 5667789999999999999999999999996 999999999999
Q ss_pred HHHhcccCCChHhHHHHHHHHhhhcC
Q 015414 297 LMVLFRREFSFCDSLYLWEMMWALEY 322 (407)
Q Consensus 297 ~~tlF~~~l~~~~vlriWD~~~~~~~ 322 (407)
++|+|++++|++.++||||.++++|.
T Consensus 173 ~~~lF~~~~~~~~~~riwD~~l~eG~ 198 (199)
T smart00164 173 FLTLFARELPLEIVLRIWDVLFAEGS 198 (199)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999985
No 4
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=5.2e-37 Score=307.15 Aligned_cols=378 Identities=40% Similarity=0.683 Sum_probs=286.2
Q ss_pred ccccCcccccCCCCCCCCCCCCCCCHHHHHhhcCCCCCcc-HHHHHHHHhhCCCCCCchHhhhhhhhCCCCCCCCHHHHH
Q 015414 12 YYEVRPECTDVPKTRFKIKPGKTLSARKWQAAFTPEGQLD-IGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDERE 90 (407)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~lt~~~W~~~~~~~~~i~-~~~~l~~~~~~GIp~~~R~~vW~~LLg~~~~~~t~~~~~ 90 (407)
..-.++.|...+.+...++..++++.++|+..|.++|... ..+.++.+..+||+|++|++||++|+|+|+.+++.+++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~l~~i~~~gi~psir~evw~fll~~y~~~~~~~~~~ 104 (488)
T KOG2197|consen 25 VVDSREPCLSQSRIWVLIKPGKTLKPEKWQANFDPDGRLSGFVKLLKLIILGGIDPSIRGEVWEFLLGCYDLDSTFEERN 104 (488)
T ss_pred cccccccccccCCcceeeccccccchhhhhhccCCCccccchhhhheeeecCCCCCcccchhHHHHhcccCCCCchHHHH
Confidence 5556677888888999999999999999999999998875 778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccCCC-cccccccccCCCCCC-----CCcccccccCCC--------------------
Q 015414 91 EIRQRRRLQYSAWKEECHQIFPVVGSG-KFITAPVVTEDGQPI-----QDPLVLQETNSG-------------------- 144 (407)
Q Consensus 91 ~~~~~~~~~Y~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-------------------- 144 (407)
.++..++.+|..|..+|..+.+..+.+ ...+.....+++.|. .+.....+....
T Consensus 105 ~~r~~~~~~~~~l~~~c~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~ 184 (488)
T KOG2197|consen 105 QLRVARRPQYNELLLVCQMMKSTVGNGLSYVVSSVVSDNRSPSLTLEEYNSNAMREGRLDESVHQRERIFSGGLSKSLRA 184 (488)
T ss_pred HHHhhcccchHHHHHHcchhhhhhccccceeeeEEeecCCCCcchhhhhhhhhhhccccccchhhhheecccccccchhh
Confidence 999999999999999999999887776 555555555555552 111111110000
Q ss_pred -----------CCCcch--------------hHHHhhhcCCCchhHHHHHHHHHHHHhhhhcCCCCCcccccChhh--HH
Q 015414 145 -----------ISASSS--------------KMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQEN--LS 197 (407)
Q Consensus 145 -----------~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~RT~~~~~~f~~~~~--~~ 197 (407)
+..... ....|.......+.....+......|.+||.||.+.+.++....+ ..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~qW~~~~~~~~~~~~~~~~~~~~i~~dv~rtDr~~~~~~~~~n~~~~ 264 (488)
T KOG2197|consen 185 EVWKFLLDYSPWDSTTRERVSLRKLTDEYFRLKLQWSSTSPEQSPESEGYLERKSRIEKDVGRTDRSLEFYEGEENPHLA 264 (488)
T ss_pred hhhhhhhcccCcccccccccccccccccHhhhhhhheeccccccccccchhhhhhhhhhhccccchhhhhhhcccccCHH
Confidence 000000 000000000000000111223446799999999999999988777 99
Q ss_pred HHHHHHHHHHhhCCCCCcCCChhHHHHHHHHhhcchhHHHHHHHHHHHhhccCccCCCChhhHHHHHHHHHHHHHhhCHH
Q 015414 198 KLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPK 277 (407)
Q Consensus 198 ~L~~iL~ay~~~~~~igY~QGm~~i~a~ll~~~~~E~~aF~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~dp~ 277 (407)
.|.+||.+|+.+++++||||||+++++|++.++.+|.+|||||+.+|.++..+|..+.. +++..+..+..+++..||.
T Consensus 265 ~l~~iL~ty~~~~~d~GY~QgmSDllspi~~v~~de~~aFwcFv~fm~~~~~nF~~d~~--~~~~Ql~~~~~li~~~dp~ 342 (488)
T KOG2197|consen 265 RLVDILLTYAVYDFDLGYCQGMSDLLSPILIVMEDEVEAFWCFVGFMDRLRHNFRIDQS--GMQTQLAQLSSLIQELDPR 342 (488)
T ss_pred HHHHHHhhcccccCccccccCchhhcCcceeeecCchHHHHHHHHHHHHHhhcCccccc--cHHHHhhhhhhhccccCHH
Confidence 99999999999999999999999999999999999999999999999999999976654 9999999999999999999
Q ss_pred HHHHHHhCCCCCcchhHHHHHHhcccCCChHhHHHHHHHHhhhcCCh--hhHHHHHHHHHhhhhhccCC-cchHHHHHhc
Q 015414 278 LHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDP--HLFYLYEEAESAASTKSEGS-KAKAKSIRQC 354 (407)
Q Consensus 278 L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~vlriWD~~~~~~~~~--~~~~~~~~l~~~~~~~il~~-~~~~~~l~~~ 354 (407)
||.||+..+.....|+++|++.+|.++|.+++++++|+++++.-+.. .+|...+++-.. .+.++.+ ......++++
T Consensus 343 l~~hLe~~d~~~~~f~fr~l~v~frrEf~~ed~l~LWEvlw~~~~~~~f~~~~~~~~l~~~-~~~l~~~~~~~~e~l~~i 421 (488)
T KOG2197|consen 343 LYQHLEKLDAGDLFFCFRMLLVPFRREFEFEDSLRLWEVLWTDLPSPHFHLYVAPAILNKD-PQTLMEQGKSFNEVLKHV 421 (488)
T ss_pred HHhhccccCCCccceeeehhhcccccccccccHHHHHHHHHhcCccchHHHHHHHhhhhcc-hHHHHhcCccchhHHhhc
Confidence 99999999999999999999999999999999999999999976655 222223322221 2222222 1122222323
Q ss_pred CchhhhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhcchhHHHh
Q 015414 355 GKYERENMKNGAKTSEAPLPISVFLVASVLKDKSSKLLQEARGLDDVVK 403 (407)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~d~~~~ 403 (407)
+. .......+.++..|......+++.++...+++++..
T Consensus 422 ~~-----------~~~~~d~~~~~~~A~~~~~~~k~~~~~~~~~~~~~~ 459 (488)
T KOG2197|consen 422 NL-----------LSEKADVLWVLVRAEALERQNKQMEEPPEVMDEIES 459 (488)
T ss_pred cc-----------ccccchhhhHHHHHHHHHHHHHhccccccchhhhhh
Confidence 32 222334577788899999899999888888887654
No 5
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7e-37 Score=287.89 Aligned_cols=236 Identities=28% Similarity=0.485 Sum_probs=202.7
Q ss_pred ccHHHHHHHHhhCCCCCCchHhhhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcccccccccCCC
Q 015414 50 LDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGSGKFITAPVVTEDG 129 (407)
Q Consensus 50 i~~~~~l~~~~~~GIp~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (407)
+|..+ +|.++|+|||...|+.+|++|+|++|+++ +-++...+.++..|.+++.++....... +.+
T Consensus 176 id~~~-Lr~l~w~Gvp~~~Rp~~Wkll~gylp~n~--~rr~~~l~~Kr~eY~~~v~~~~~~~~~~------------~~~ 240 (484)
T KOG1092|consen 176 IDLEK-LRKLCWNGVPSKMRPIVWKLLSGYLPPNS--DRREGTLQRKRKEYVDSVVQYFDSLTNG------------DED 240 (484)
T ss_pred ccHHH-HHHHccCCCCccccCccceeeecccCcch--hhhhhhHHHHHHHHHHHHHHHhccCCCc------------ccc
Confidence 44544 99999999999999999999999999887 6777888999999999999876432100 000
Q ss_pred CCCCCcccccccCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcCCCCCcccccChhhHHHHHHHHHHHHhh
Q 015414 130 QPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWV 209 (407)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~RT~~~~~~f~~~~~~~~L~~iL~ay~~~ 209 (407)
....+||..|++|+.|+.++|+.+..++.+.|||+.++.+
T Consensus 241 ----------------------------------------~d~~rQI~id~prm~p~~~l~q~~~vq~~lerIl~iwair 280 (484)
T KOG1092|consen 241 ----------------------------------------QDTWRQIPIDIPRMNPHIPLFQQKIVQEMLERILYIWAIR 280 (484)
T ss_pred ----------------------------------------CccccccccCCCCCCccccchhhHHHHHHHHHHHHHHHHh
Confidence 1257899999999999999999999999999999999999
Q ss_pred CCCCCcCCChhHHHHHHHHhhc-------------------------chhHHHHHHHHHHHhhccCccCCCChhhHHHHH
Q 015414 210 DRDVGYCQGMSDLCSPMIILLE-------------------------NEADAFWCFERLMRRLRGNFRCTESSVGVETQL 264 (407)
Q Consensus 210 ~~~igY~QGm~~i~a~ll~~~~-------------------------~E~~aF~~f~~l~~~~~~~~~~~~~~~~~~~~~ 264 (407)
+|..||+||.++++.+++.++. -|+++|||+.+|++.+.++|.+. .+|++...
T Consensus 281 hpAsGyvqgindlvtpf~vvfl~e~l~~~~~~~~~d~~~l~~E~~~~iEADsyWClskLLD~IQDNYtfa--QpGIq~kV 358 (484)
T KOG1092|consen 281 HPASGYVQGINDLVTPFFVVFLSEYLGPIMDVESIDMSLLPAENAEDIEADAYWCLSKLLDGIQDNYTFA--QPGIQRKV 358 (484)
T ss_pred cccccccccceeeechhhhhhhHhhcCccccccccchhhccHHHHhhhhhhHHHHHHHHHHHhhhhhhhc--ChhHHHHH
Confidence 9999999999999999998872 29999999999999999999876 46999999
Q ss_pred HHHHHHHHhhCHHHHHHHHhCCCCCcchhHHHHHHhcccCCChHhHHHHHHHHhhhcCChhhHHHHHH--HHHhhhhhcc
Q 015414 265 SNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYEE--AESAASTKSE 342 (407)
Q Consensus 265 ~~~~~ll~~~dp~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~vlriWD~~~~~~~~~~~~~~~~~--l~~~~~~~il 342 (407)
..++.|++..|+.||+||+++|++-..|++||+.+||.|++|+..++|+||.|++++..+.-|++|.+ .+...+++++
T Consensus 359 ~~L~eLv~RID~~~hkHlq~~gveylQFAFRWmNcLLmRE~pl~~~iRlWDTY~aE~dgf~~FhvYvcAAFL~kW~~eL~ 438 (484)
T KOG1092|consen 359 KNLKELVQRIDEPLHKHLQEHGVEYLQFAFRWMNCLLMREFPLRCTIRLWDTYLAEPDGFNEFHVYVCAAFLLKWSSELM 438 (484)
T ss_pred HHHHHHHHHhcHHHHHHHHHhchHHHHHHHHHHHHHHHhhccchhHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999777655444332 2333366665
No 6
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.6e-35 Score=278.58 Aligned_cols=244 Identities=21% Similarity=0.339 Sum_probs=189.7
Q ss_pred HHHhhcCCC-CCccHHHHHHHHhhCCCCCCchHhhhhhhhCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHhhhhccccCC
Q 015414 39 KWQAAFTPE-GQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQ-YSAWKEECHQIFPVVGS 116 (407)
Q Consensus 39 ~W~~~~~~~-~~i~~~~~l~~~~~~GIp~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~-Y~~l~~~~~~~~~~~~~ 116 (407)
.|.+-+-++ ..+-..+.++.++|.|||+++|+.||.+..| ...+.|.+-.+..+.+..+. ...+.++..
T Consensus 276 vW~~eILpnWe~m~~SrR~relWwQGiP~~VRGkvW~laIG-Nel~it~elfd~~la~Aker~ak~~aeq~~-------- 346 (586)
T KOG2223|consen 276 VWENEILPNWEDMLKSRRVRELWWQGIPPSVRGKVWSLAIG-NELNITYELFDIALARAKEREAKSLAEQMS-------- 346 (586)
T ss_pred HHHHHhccchHHHHhhHHHHHHHHccCChhhcchhhHhhhC-cccccCHHHHHHHHHHHHHHHHHHHHhhcc--------
Confidence 355444332 3332334489999999999999999999999 46666666554444333332 232222100
Q ss_pred CcccccccccCCCCCCCCcccccccCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcCCCCCcccccCh-hh
Q 015414 117 GKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQ-EN 195 (407)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~RT~~~~~~f~~~-~~ 195 (407)
+...+....+.+|+.|+.||||++.+|+.+ +.
T Consensus 347 -----------------------------------------------~sa~~re~sv~~i~LDisrTfpsl~iFqk~GPy 379 (586)
T KOG2223|consen 347 -----------------------------------------------NSAADREASVELIKLDISRTFPSLSIFQKGGPY 379 (586)
T ss_pred -----------------------------------------------cchhhhhcchhheeechhccCcceeeeccCCch
Confidence 011223346789999999999999999875 88
Q ss_pred HHHHHHHHHHHHhhCCCCCcCCChhHHHHHHHHhhcchhHHHHHHHHHHHhhc--cCccCCCChhhHHHHHHHHHHHHHh
Q 015414 196 LSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLR--GNFRCTESSVGVETQLSNLASITQV 273 (407)
Q Consensus 196 ~~~L~~iL~ay~~~~~~igY~QGm~~i~a~ll~~~~~E~~aF~~f~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~ll~~ 273 (407)
++.|..+|.||+.|.|++||+|||.+|+|++++.+ ++++||.+|.+|+++-. ..|.. ....+..++..|+..+++
T Consensus 380 ~d~L~~lL~AYt~yRpDvgYVqgmSFIaAvLllnm-d~~~AFiafANLLdkp~q~Aff~~--d~s~m~~yf~tfe~~lee 456 (586)
T KOG2223|consen 380 HDDLHSLLGAYTCYRPDVGYVQGMSFIAAVLLLNM-DLADAFIAFANLLDKPCQQAFFRV--DHSSMLSYFATFEVFLEE 456 (586)
T ss_pred HHHHHHHhhhheeecCccccccchHHHHHHHHHcC-CcHHHHHHHHHHhccHHHHHHHhc--CcHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998888 89999999999999833 34433 345888999999999999
Q ss_pred hCHHHHHHHHhCCCCCcchhHHHHHHhcccCCChHhHHHHHHHHhhhcCChhhHHHHHHHHHhhhhhcc
Q 015414 274 IDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYEEAESAASTKSE 342 (407)
Q Consensus 274 ~dp~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~vlriWD~~~~~~~~~~~~~~~~~l~~~~~~~il 342 (407)
..|+|+.||.++++.|.+|++.|+.+||+..+|++.++||||+|+-+|..+. |.....++...+.+++
T Consensus 457 nlp~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rdgeeFl-fr~~lgIlklyepkLl 524 (586)
T KOG2223|consen 457 NLPKLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDGEEFL-FRTALGILKLYEPKLL 524 (586)
T ss_pred ccHHHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeecchHHH-HHHHHHHHHHccchHh
Confidence 9999999999999999999999999999999999999999999999996654 4444444444355554
No 7
>COG5210 GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=2.2e-35 Score=300.97 Aligned_cols=253 Identities=26% Similarity=0.442 Sum_probs=205.7
Q ss_pred CHHHHHhhcCCCCC-c---cHHHHHHHHhhCCCCCCchHhhhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 015414 36 SARKWQAAFTPEGQ-L---DIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIF 111 (407)
Q Consensus 36 t~~~W~~~~~~~~~-i---~~~~~l~~~~~~GIp~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~ 111 (407)
....|.+++..++. . ...+ ++.+.+.|||+++|+.||..++|.++.... ....|..+.+.+....
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~gip~~~r~~vw~~~~~~~~~~~~----------~~~~y~~~~~~~~~~~ 250 (496)
T COG5210 182 ADKLWISYLDPNPLSFLPVQLSK-LRELIRKGIPNELRGDVWEFLLGIGFDLDK----------NPGLYERLLNLHREAK 250 (496)
T ss_pred HHHHHHHHHhcccchhhhhhHHH-HHHHHHhcCChHhhhhhHHHHhccchhhcc----------CchHHHHHHHHHHhcC
Confidence 45578888887765 2 3344 778889999999999999999998765442 3334665555433110
Q ss_pred cccCCCcccccccccCCCCCCCCcccccccCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcCCCCCccccc
Q 015414 112 PVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYE 191 (407)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~RT~~~~~~f~ 191 (407)
. + . ....++|++|+.||+|.+..|+
T Consensus 251 ~------------------~--------------------------------~-----~~~~~~i~~Dl~rt~~~~~~f~ 275 (496)
T COG5210 251 I------------------P--------------------------------T-----QEIISQIEKDLSRTFPDNSLFQ 275 (496)
T ss_pred C------------------C--------------------------------c-----HHHHHHHHcccccccccccccc
Confidence 0 0 0 0257899999999999999998
Q ss_pred ChhhHHH--HHHHHHHHHhhCCCCCcCCChhHHHHHHHHhhcchhHHHHHHHHHHHh--hccCccCCCChhhHHHHHHHH
Q 015414 192 KQENLSK--LWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRR--LRGNFRCTESSVGVETQLSNL 267 (407)
Q Consensus 192 ~~~~~~~--L~~iL~ay~~~~~~igY~QGm~~i~a~ll~~~~~E~~aF~~f~~l~~~--~~~~~~~~~~~~~~~~~~~~~ 267 (407)
....... |+|||.+|+.++|++||||||++|+|+||+++..|++||||+++||.. +...| ..++.|+...+..+
T Consensus 276 ~~~s~~~~~L~rvL~ays~~~p~vgY~QgMn~l~a~ll~~~~~Ee~AF~~l~~L~~~~~l~~~~--~~~~~G~~~~~~~l 353 (496)
T COG5210 276 TEISIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEEQAFWCLVKLLKNYGLPGYF--LKNLSGLHRDLKVL 353 (496)
T ss_pred CcccccHHHHHHHHHHHHhcCCCCceeccHHHHHHHHHHHhhhhHHHHHHHHHHHHhccchhhc--ccCCcHHHHHHHHH
Confidence 8766555 999999999999999999999999999999997799999999999993 44445 34577999999999
Q ss_pred HHHHHhhCHHHHHHHHhCCCCCcchhHHHHHHhcccCCChHhHHHHHHHHhhhcCChhhHHHHHHHHHhhhhhccCCcch
Q 015414 268 ASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYEEAESAASTKSEGSKAK 347 (407)
Q Consensus 268 ~~ll~~~dp~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~vlriWD~~~~~~~~~~~~~~~~~l~~~~~~~il~~~~~ 347 (407)
..+++..+|+||+||...++...+|+++||+|+|.+++|++.++||||++|++|....+-+.++.+... +..++....+
T Consensus 354 ~~~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~~~~l~~~-~~~l~~~~~~ 432 (496)
T COG5210 354 DDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILKLL-RDKLLKLDSD 432 (496)
T ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhh-hhhhhccCch
Confidence 999999999999999999999999999999999999999999999999999999877777777777776 8888777766
Q ss_pred HHHHHhcCch
Q 015414 348 AKSIRQCGKY 357 (407)
Q Consensus 348 ~~~l~~~~~~ 357 (407)
+.....+..+
T Consensus 433 ~~~~~~~~~~ 442 (496)
T COG5210 433 ELLDLLLKQL 442 (496)
T ss_pred hHHHHHHHhh
Confidence 6555444443
No 8
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=5.5e-35 Score=274.80 Aligned_cols=286 Identities=29% Similarity=0.547 Sum_probs=216.5
Q ss_pred CCCCCCCCCCC--CCCCHHHHHh-hcCCCCCccHH-HHHHHHhhCCCCCCchHhhhhhhhCCCCCCCCHHHHHHHHHHHH
Q 015414 22 VPKTRFKIKPG--KTLSARKWQA-AFTPEGQLDIG-KTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRR 97 (407)
Q Consensus 22 ~~~~~~~~~~~--~~lt~~~W~~-~~~~~~~i~~~-~~l~~~~~~GIp~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~ 97 (407)
.|+.+-.++.+ ++++-..|.. .+++.|+|..+ ++++.++.|||..++|+.||++||.+|+..+|.++|..++..+|
T Consensus 390 l~~se~hpde~~~kki~~n~~~~t~lne~gqiedd~~lrk~iffggid~sir~evwpfllk~ys~est~edr~al~~~kr 469 (781)
T KOG2224|consen 390 LKKSEMHPDEGDVKKIGTNAFLGTHLNEKGQIEDDLKLRKAIFFGGIDKSIRGEVWPFLLKCYSFESTFEDRAALMDIKR 469 (781)
T ss_pred CCccccCCccchhhhhhHHHHHHhhhhhcccchhHHHhhhhheeccchhhhhcchhHHHHHHhccccchhHHHHHHHHHH
Confidence 33333344433 3566677877 67888999544 66678889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh-hhccccCCCcccccccccCCCCCCCCcccccccCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHH
Q 015414 98 LQYSAWKEECH-QIFPVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQI 176 (407)
Q Consensus 98 ~~Y~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 176 (407)
++|+++..+-. .+. .++...-|+...-.+
T Consensus 470 key~eiqqkrlysms--------------------------------------------------peeh~~fwknvq~tv 499 (781)
T KOG2224|consen 470 KEYEEIQQKRLYSMS--------------------------------------------------PEEHIAFWKNVQFTV 499 (781)
T ss_pred HHHHHHHHHHhhcCC--------------------------------------------------HHHHHHHHhheEEEE
Confidence 99998765421 111 123333444455568
Q ss_pred hhhhcCCCCCcccccCh--hhHHHHHHHHHHHHhhCCCCCcCCChhHHHHHHHHhhcchhHHHHHHHHHHHhhc------
Q 015414 177 GLDVIRTDRTLVFYEKQ--ENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLR------ 248 (407)
Q Consensus 177 ~~Dv~RT~~~~~~f~~~--~~~~~L~~iL~ay~~~~~~igY~QGm~~i~a~ll~~~~~E~~aF~~f~~l~~~~~------ 248 (407)
++||.||.+++++|..+ ++.+.+++||..|+.|||.+||.|||++++||.|.-..+|.++||||+.+|..+.
T Consensus 500 dkdvvrtdrnn~ff~gddnpn~e~mk~illn~avyn~~m~ysqgmsdllapvlcevqnesetfwcfvglmqgmsdlvapi 579 (781)
T KOG2224|consen 500 DKDVVRTDRNNPFFCGDDNPNTESMKNILLNFAVYNPAMGYSQGMSDLLAPVLCEVQNESETFWCFVGLMQGMSDLVAPI 579 (781)
T ss_pred ecceeeccCCCCcccCCCCCcHHHHHHHHHhheeecccccccccchhhcchhhhhhccccchhhhhhhhhccchhhhhhH
Confidence 99999999999999875 7889999999999999999999988877777777666666666666666665321
Q ss_pred --------------------cCccCCCChhhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCC--cchhHHHHHHhcccCCC
Q 015414 249 --------------------GNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGD--YLFAFRMLMVLFRREFS 306 (407)
Q Consensus 249 --------------------~~~~~~~~~~~~~~~~~~~~~ll~~~dp~L~~hl~~~~i~~--~~~~~~W~~tlF~~~l~ 306 (407)
..|...+....+...+..+..|++...|..|+||.++|-+. .+||.+|++.+|.++||
T Consensus 580 laevldesdtfwcfvglmqna~fv~sp~d~dmd~~l~ylreliri~~~~fykhl~q~~ed~lellfchrwlllcfkref~ 659 (781)
T KOG2224|consen 580 LAEVLDESDTFWCFVGLMQNAFFVCSPRDEDMDHNLLYLRELIRIMHPHFYKHLEQHGEDGLELLFCHRWLLLCFKREFP 659 (781)
T ss_pred HHhhhccccchhhhhhhhcceEEEeCCcchhhhHhHHHHHHHHHHhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhhccc
Confidence 23444555567888889999999999999999999987543 37999999999999999
Q ss_pred hHhHHHHHHHHhhhc--CChhhHHHHHHHHHhhhhhccCCcchHHHHHhcCch
Q 015414 307 FCDSLYLWEMMWALE--YDPHLFYLYEEAESAASTKSEGSKAKAKSIRQCGKY 357 (407)
Q Consensus 307 ~~~vlriWD~~~~~~--~~~~~~~~~~~l~~~~~~~il~~~~~~~~l~~~~~~ 357 (407)
-..++|||+..|+.- .-+.+|.++|++...+.+.+...-.+.+.|.+|+++
T Consensus 660 ea~airiweacwa~y~tdyfhlficlaiiaiy~ddvi~q~l~~demllhf~nl 712 (781)
T KOG2224|consen 660 EAEAIRIWEACWAHYLTDYFHLFICLAIIAIYADDVIAQNLAPDEMLLHFGNL 712 (781)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHhhcCchhHHHhhhhh
Confidence 999999999999852 122445555555444344444455667788888875
No 9
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=100.00 E-value=2.6e-33 Score=255.75 Aligned_cols=168 Identities=32% Similarity=0.581 Sum_probs=141.9
Q ss_pred HHHHHhhhhcCCCCCcccccChhhHHHHHHHHHHHHhhCCCCCcCCChhHHHHHHHHhhcchhHHHHHHHHHHH-hhccC
Q 015414 172 TLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMR-RLRGN 250 (407)
Q Consensus 172 ~~~~I~~Dv~RT~~~~~~f~~~~~~~~L~~iL~ay~~~~~~igY~QGm~~i~a~ll~~~~~E~~aF~~f~~l~~-~~~~~ 250 (407)
..++|++|+.||+++...+..+.++..|.+||.+|+.++|++||+|||++|+++++.++.+|++|||||++++. .....
T Consensus 46 ~~~~I~~Dv~rt~~~~~~~~~~~~~~~l~~iL~~~~~~~~~~~Y~qG~~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~ 125 (214)
T PF00566_consen 46 IFEQIDKDVNRTFPNSFLFKNEQNQKSLERILSAYAKYNPDVGYCQGMNDIAAPLLLVFLDEEEAFWCFVQLLNYYLPDF 125 (214)
T ss_dssp CHHHHHHHHCTSSTSCCCSTTHHHHHHHHHHHHHHHHHTTTTSS-TTHHHHHHHHHHTCSHHHHHHHHHHHHHTHHGGGG
T ss_pred HHHHHHHhhhhhcccchhhhhcchHHHHHHHHHHhccccccccccchhhhhhhhhhhhcccccchhccccchhccccccc
Confidence 35789999999999777788889999999999999999999999999999999999888899999999999994 44554
Q ss_pred ccCCCChhhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCCcchhHHHHHHhcccCCChHhHHHHHHHHhhhcCChhhHHHH
Q 015414 251 FRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLY 330 (407)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~ll~~~dp~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~vlriWD~~~~~~~~~~~~~~~ 330 (407)
|. ++..++...+..++.+++.++|+|++||++.|+++..|+.+|+.|+|++.+|.+.++|||| ++.+|+...++.++
T Consensus 126 ~~--~~~~~~~~~~~~~~~ll~~~~P~l~~~l~~~~~~~~~~~~~w~~~lF~~~l~~~~~~~lwD-~l~~g~~~~l~~~~ 202 (214)
T PF00566_consen 126 FQ--PNFKGLQKILKIFEQLLKKHDPELYNHLKQLGVDPEIYAFPWFLTLFSRSLPFDDVLRLWD-FLLEGYKFFLFFIA 202 (214)
T ss_dssp TS--TTHHHHHHHHHHHHHHHHHHTHHHHHHHHHTT-GGHHHHHHHHHTTTTTTS-HHHHHHHHH-HHHHCTTHHHHHHH
T ss_pred cc--ccccccchhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHhhcCCcCCHHHHHHHHH-HHHcCCCcHHHHHH
Confidence 53 3456899999999999999999999999999999999999999999999999999999999 66688877344444
Q ss_pred HHHHHhhhhhcc
Q 015414 331 EEAESAASTKSE 342 (407)
Q Consensus 331 ~~l~~~~~~~il 342 (407)
++++...+++||
T Consensus 203 lail~~~~~~il 214 (214)
T PF00566_consen 203 LAILKYLRDQIL 214 (214)
T ss_dssp HHHHHHTHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 444444366553
No 10
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=99.97 E-value=6.8e-31 Score=249.79 Aligned_cols=267 Identities=20% Similarity=0.328 Sum_probs=209.4
Q ss_pred cHHHHHHHHhhCCCCCCchHhhhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcccccccccCCCC
Q 015414 51 DIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGSGKFITAPVVTEDGQ 130 (407)
Q Consensus 51 ~~~~~l~~~~~~GIp~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (407)
..+++...+..||||+++|+..|+.|.|.+.... ...-.|++.+++|..-.
T Consensus 158 ktdk~~~llkeggiphslr~~lw~rlsga~~kkk----------~ae~sy~~ilk~~andk------------------- 208 (848)
T KOG2222|consen 158 KTDKFEELLKEGGIPHSLRAFLWMRLSGALAKKK----------DAETSYEDILKACANDK------------------- 208 (848)
T ss_pred chHHHHHHHHcCCCCcchhHHHHHHhhhhhhhhc----------cccccHHHHHHHhcccc-------------------
Confidence 3455445666778999999999999999854322 22235888888765210
Q ss_pred CCCCcccccccCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcCCCCCcccccCh--hhHHHHHHHHHHHHh
Q 015414 131 PIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQ--ENLSKLWDILAVYAW 208 (407)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~RT~~~~~~f~~~--~~~~~L~~iL~ay~~ 208 (407)
+ .+-.||++|+-|+.|++..|... ++.+.|+|||.+.++
T Consensus 209 ~---------------------------------------~~~~qiekdllr~lpnn~cf~k~n~~gi~~lrrilk~ia~ 249 (848)
T KOG2222|consen 209 L---------------------------------------MIGKQIEKDLLRILPNNACFSKKNGEGIEALRRILKCIAF 249 (848)
T ss_pred c---------------------------------------chhHHHHHHHHHhCCCcceeeCCCCcchHHHHHHHhhhee
Confidence 0 14468999999999999999775 788999999999999
Q ss_pred hCCCCCcCCChhHHHHHHHHhhcchhHHHHHHHHHHHhhc-cCccCCCChhhHHHHHHHHHHHHHhhCHHHHHHHHhCCC
Q 015414 209 VDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLR-GNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGG 287 (407)
Q Consensus 209 ~~~~igY~QGm~~i~a~ll~~~~~E~~aF~~f~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~dp~L~~hl~~~~i 287 (407)
..|++||||||.-|+|.+|+.+ .|+.|||++..+++.+. ++|+ .....|++..-.+...|+.-+.|.|-+.|+..++
T Consensus 250 ifpdigycqg~gviva~lllf~-~ee~afwmmaaiiedilp~nfy-sqtllgiqaderv~~~li~~~l~~ldeal~~~di 327 (848)
T KOG2222|consen 250 IFPDIGYCQGMGVIVACLLLFC-EEENAFWMMAAIIEDILPANFY-SQTLLGIQADERVMHHLIACHLPDLDEALEDHDI 327 (848)
T ss_pred ecCCcccccCccHHHHHHHHHh-cchhHHHHHHHHHHHhcCchhh-hhhHhccchhHHHHHHHHHhccCchhHHHHhccc
Confidence 9999999999999999998888 68899999999999865 4554 5567899999999999999999999999999999
Q ss_pred CCcchhHHHHHHhcccCCChHhHHHHHHHHhhhcCChhhHHHHHHHHHhhhhh-c-------cCCcchHHHHHhcCch--
Q 015414 288 GDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYEEAESAASTK-S-------EGSKAKAKSIRQCGKY-- 357 (407)
Q Consensus 288 ~~~~~~~~W~~tlF~~~l~~~~vlriWD~~~~~~~~~~~~~~~~~l~~~~~~~-i-------l~~~~~~~~l~~~~~~-- 357 (407)
+.++.+..||+|||++.+.....+||||.||.+| ...+|.+.+.++.. ++. + ..+.+....|+++|.-
T Consensus 328 elslitl~w~ltlf~nv~~~killriwd~~fy~g-~i~ifql~i~ilkm-keqdi~~iaettensa~if~als~ip~~vt 405 (848)
T KOG2222|consen 328 ELSLITLHWFLTLFANVFHMKILLRIWDFFFYEG-GINIFQLIIGILKM-KEQDIKEIAETTENSADIFNALSDIPAEVT 405 (848)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHHHHHhheecC-cchhHHHHHHHHHh-hHHHHHHHHHhcccHHHHHHHHHhCCchhh
Confidence 9999999999999999999999999999999988 68889888888887 543 2 1223344556666652
Q ss_pred hhhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHh
Q 015414 358 ERENMKNGAKTSEAPLPISVFLVASVLKDKSSKLLQEA 395 (407)
Q Consensus 358 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 395 (407)
+.+++...+-.. ...+..-+....|++.+...
T Consensus 406 dve~l~~~~~~~------~~sis~~li~~~rkkh~a~l 437 (848)
T KOG2222|consen 406 DVEKLFEQAGEF------EFSISDHLIAEHRKKHLAVL 437 (848)
T ss_pred hHHHHHHHHhhc------ccchhHHHHHHHHHHhHHhh
Confidence 344444433222 22445556666777766665
No 11
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=99.96 E-value=1.6e-28 Score=238.92 Aligned_cols=191 Identities=19% Similarity=0.222 Sum_probs=171.2
Q ss_pred HHHHHhhhhcCCCCCcccccChhhHHHHHHHHHHHHhhCCCCCcCCChhHHHHHHHHhh-cchhHHHHHHHHHHHhhccC
Q 015414 172 TLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILL-ENEADAFWCFERLMRRLRGN 250 (407)
Q Consensus 172 ~~~~I~~Dv~RT~~~~~~f~~~~~~~~L~~iL~ay~~~~~~igY~QGm~~i~a~ll~~~-~~E~~aF~~f~~l~~~~~~~ 250 (407)
...||+.|++|+.....+.+++.+++.|+|+|.|++..+|..-|.||+..+|+||++.+ .+|..||-|+..|+-++..+
T Consensus 390 tdrqievdiprchQyd~~lsSp~~~r~lrRvLkawv~~s~~fvywqgldsLa~PFl~ln~Nne~laF~~~~~fi~kycq~ 469 (725)
T KOG1093|consen 390 TDRQIEVDIPRCHQYDELLSSPKGHRKLRRVLKAWVTWSPIFVYWQGLDSLAAPFLYLNFNNELLAFACIATFIPKYCQH 469 (725)
T ss_pred chhhhhcccchhhhcccccCCHHHHHHHHHHHHHHHhcCcceeecCCChhhhhhHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999875 57999999999999998766
Q ss_pred ccCCCChhhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCCcchhHHHHHHhcccCCChHhHHHHHHHHhhhcCChhhHHHH
Q 015414 251 FRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLY 330 (407)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~ll~~~dp~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~vlriWD~~~~~~~~~~~~~~~ 330 (407)
|+-.++..-++.++..|.+++..+||+|++||..+|+.+.+|+.+||+|+|+++||++..+.+||-++..+..+.++..+
T Consensus 470 fflkdns~vikeyLs~f~~l~AfhDpeL~qHl~~~~f~~eLyAiPwflT~Fshvlpl~kil~LwD~lml~~~SFplmi~v 549 (725)
T KOG1093|consen 470 FFLKDNSNVIKEYLSMFSQLLAFHDPELLQHLIDIGFIPELYAIPWFLTMFSHVLPLHKILHLWDNLMLGHSSFPLMIGV 549 (725)
T ss_pred HHhhcCchhHHHHHHHHHHHHHhcCHHHHHHHHHcCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCCccHHHHHH
Confidence 66555666889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhccCCcchHHH--HHhcCchhhhhhh
Q 015414 331 EEAESAASTKSEGSKAKAKS--IRQCGKYERENMK 363 (407)
Q Consensus 331 ~~l~~~~~~~il~~~~~~~~--l~~~~~~~~~~~~ 363 (407)
|++... |+.+++|.-.+.+ ..+.|+++-+.++
T Consensus 550 Ail~~l-R~~LLa~nfne~illf~d~pdldId~~I 583 (725)
T KOG1093|consen 550 AILIQL-RDPLLACNFNECILLFSDLPDLDIDVCI 583 (725)
T ss_pred HHHHHh-hhhhhhCCchhheeeeccCCcccHHHHH
Confidence 999999 9999988644444 3556666554443
No 12
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=99.95 E-value=1.1e-28 Score=243.99 Aligned_cols=247 Identities=19% Similarity=0.337 Sum_probs=203.9
Q ss_pred HHHhhcCCCCC-ccH--HHHHHHHhhCCCCCCchHhhhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccC
Q 015414 39 KWQAAFTPEGQ-LDI--GKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVG 115 (407)
Q Consensus 39 ~W~~~~~~~~~-i~~--~~~l~~~~~~GIp~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~ 115 (407)
.|++++.++|. ++. ...++++.+.|+|...|++.|..+.|.. ..+..+...|.++++...-
T Consensus 175 ~W~~~f~~~G~~~~~~qt~~~~Klv~~gipe~~rgeiW~l~sGav----------~~~l~~~Geygkll~~~~G------ 238 (671)
T KOG4347|consen 175 FWKKYFIKDGPNMNQIQTILLRKLLYNGFPEDPRGEIWYLASGAV----------ASLLLNPGEYGKLLHSVTG------ 238 (671)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhcCCChHHHHHHhhhHHH----------HHhhcCcHHhhhhhhcccC------
Confidence 59999988765 432 2337888899999999999999999962 2344556678877664210
Q ss_pred CCcccccccccCCCCCCCCcccccccCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcCCCCCcccccChhh
Q 015414 116 SGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQEN 195 (407)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~RT~~~~~~f~~~~~ 195 (407)
+.+-..+.|++|..|..|.++-|+.+++
T Consensus 239 ----------------------------------------------------~~~~a~eEIE~Dl~rsLpEhpA~Q~e~g 266 (671)
T KOG4347|consen 239 ----------------------------------------------------KRSVATEEIEPDLGRSLPEHPAFQSEPG 266 (671)
T ss_pred ----------------------------------------------------CcccccccccCCCCCCCCcchhhhCCCc
Confidence 0011345699999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCcCCChhHHHHHHHHhhcchhHHHHHHHHHHHhhccCccCCCChhhHHHHHHHHHHHHHhhC
Q 015414 196 LSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVID 275 (407)
Q Consensus 196 ~~~L~~iL~ay~~~~~~igY~QGm~~i~a~ll~~~~~E~~aF~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~d 275 (407)
...|+|||.||++.||+|||||-||-+++.+++.+ .|+.|||+++.+.+.+.+.|+. ....|......+++.+++.+.
T Consensus 267 i~aLR~vL~Aya~~Np~vGYcQaMNIV~s~lll~~-~EEeafwll~~lce~~ip~yys-~~vvGtliDQ~vfe~lve~~l 344 (671)
T KOG4347|consen 267 IAALRRVLTAYAWSNPEVGYCQAMNIVGSELLLFC-KEEEAFWLLSKLCEIYIPDYYS-KTVVGTLIDQSVFEELVEDTL 344 (671)
T ss_pred hhhHHHHHHhhhccCCchhHHHHHHHHHHhhhhhh-ccchHHHHHHHHHHHhcccccc-hhhhhhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999998888 7889999999999998888764 456688888899999999999
Q ss_pred HHHHHHHHhCCCCCcchhHHHHHHhcccCCChHhHHHHHHHHhhhcCChhhHHHHHHHHHhhhhhccCCcchHHHHHhcC
Q 015414 276 PKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYEEAESAASTKSEGSKAKAKSIRQCG 355 (407)
Q Consensus 276 p~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~vlriWD~~~~~~~~~~~~~~~~~l~~~~~~~il~~~~~~~~l~~~~ 355 (407)
|.|+.|+...+ ...+...+||+|+|-..+|++..+||-|+||.+|.. .+|-+...++..+.++++.+.++-+.+.-++
T Consensus 345 P~l~~~~~~l~-~l~~Vsl~WFlslFls~m~le~a~~ilD~FF~eG~r-vlFqiaLail~~N~~~il~~~dDge~~~vl~ 422 (671)
T KOG4347|consen 345 PVLGEHLAVLG-QLSTVSLSWFLSLFLSLMPLEYAVRILDCFFYEGPR-VLFQIALAILKQNAERILSATDDGEAMMVLG 422 (671)
T ss_pred hHHHHHhhhhc-ccceEeeHHHHHHHHHHcchHHHHHHHhhhhhcccH-HHHHHHHHHHHhhHHHhcccCCchHHHHHHH
Confidence 99999999999 566889999999999999999999999999999964 4555555555555889999988877776665
Q ss_pred ch
Q 015414 356 KY 357 (407)
Q Consensus 356 ~~ 357 (407)
++
T Consensus 423 ~y 424 (671)
T KOG4347|consen 423 NY 424 (671)
T ss_pred HH
Confidence 54
No 13
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.7e-27 Score=231.74 Aligned_cols=257 Identities=23% Similarity=0.288 Sum_probs=185.8
Q ss_pred CCchHhhhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcccccccccC---CCCCCCCcccccccC
Q 015414 66 PSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGSGKFITAPVVTE---DGQPIQDPLVLQETN 142 (407)
Q Consensus 66 ~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 142 (407)
...|+.+|+++|||+|.+.+ .|..-..+.+..|..+...+. +.+. ...+ -..++.+|...+
T Consensus 27 s~~Rgv~Wrl~L~vLp~~~s--s~id~~~~~ra~~r~~r~~~L-~dPh----------~~k~~~s~d~~idnPLSq~--- 90 (625)
T KOG1091|consen 27 SNLRGVRWRLLLGVLPSENS--SWIDNLRRLRANYRRLRRRLL-IDPH----------NLKENHSPDLPIDNPLSQN--- 90 (625)
T ss_pred hhhhhHHHHHhheecCCCch--hHHHHHHHHhhhhhccccccc-cCcc----------ccccccCCCcccCCccccC---
Confidence 45799999999999998864 344444556666766533211 1110 0000 012223333111
Q ss_pred CCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcCCCCCc-ccccChhhHHHHHHHHHHHHhhCCCCCcCCChhH
Q 015414 143 SGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTL-VFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSD 221 (407)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~RT~~~~-~~f~~~~~~~~L~~iL~ay~~~~~~igY~QGm~~ 221 (407)
..+.|.+++++.+..+.|+.|+.||||.+ .+|+.+..+..|++||..||..||.+||-|||++
T Consensus 91 ----------------~~S~W~rfF~d~EL~~~i~qDvsRtfPe~~~fFqs~~~q~mLr~iLl~~~lehp~i~YrQGMHE 154 (625)
T KOG1091|consen 91 ----------------PQSVWNRFFRDAELEKTIDQDVSRTFPEHSLFFQSPEVQGMLRRILLLYALEHPEIGYRQGMHE 154 (625)
T ss_pred ----------------CCchhhhhcCcHHHHHhhcchhhccCcchhhhhcCchhhHHHHHHHHHHHhhchhhhHHhhhhh
Confidence 23358889999999999999999999999 8888889999999999999999999999999999
Q ss_pred HHHHHHHhhcc-------------------h-----------hHHH--HHHHHHHHhhccCc------------------
Q 015414 222 LCSPMIILLEN-------------------E-----------ADAF--WCFERLMRRLRGNF------------------ 251 (407)
Q Consensus 222 i~a~ll~~~~~-------------------E-----------~~aF--~~f~~l~~~~~~~~------------------ 251 (407)
+.||++++... | .+++ -+|+.+|..-..+|
T Consensus 155 lLAPl~fVl~~D~q~l~h~se~~~~~l~f~E~d~iy~~~y~k~d~dn~~lqs~lmls~~~~~e~e~g~~~~e~~ie~day 234 (625)
T KOG1091|consen 155 LLAPLLFVLHVDNQALLHVSESLFDKLGFEERDVIYNFLYLKTDLDNTELQSVLMLSDEYGYEEELGIVLSEKLIEHDAY 234 (625)
T ss_pred hhhhhhhheehhHHHHHHHHHhhhhhcCcchhhhhhhHHHHhhhccchhHHHHHHhhhccccccCcceecCcccCCcCcc
Confidence 99999987621 2 2223 24455554311111
Q ss_pred cC----CCChhhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCCcchhHHHHHHhcccCCChHhHHHHHH-HHhhhcCCh--
Q 015414 252 RC----TESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWE-MMWALEYDP-- 324 (407)
Q Consensus 252 ~~----~~~~~~~~~~~~~~~~ll~~~dp~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~vlriWD-~~~~~~~~~-- 324 (407)
.+ .+..+.+......+..+|...|+.||.||.+.||.|++|.+||+..||.|+||+.+++.+|| +++++++..
T Consensus 235 ~~~d~l~~~l~~v~e~~~~~~~lL~~~D~~Lh~HL~~l~i~pqifgiRWlRlLFGREfpL~dLLiVWD~~l~~d~pr~~L 314 (625)
T KOG1091|consen 235 VMFDALMPGLPPVFEANFAQYHLLAKVDKSLHSHLVELGIEPQIFGIRWLRLLFGREFPLQDLLIVWDHVLIFDSPRGIL 314 (625)
T ss_pred cchhhhcccchhHHHHhhhhhhhhhhccHHHHHHHHhcCCchHHHHHHHHHHHHcchhHHHHHHHHhhhhhhccCchHHH
Confidence 00 12344566677788999999999999999999999999999999999999999999999999 777776544
Q ss_pred hhHHHHHHHHHhhhhhccCCcchHHHHHhcCc
Q 015414 325 HLFYLYEEAESAASTKSEGSKAKAKSIRQCGK 356 (407)
Q Consensus 325 ~~~~~~~~l~~~~~~~il~~~~~~~~l~~~~~ 356 (407)
..+.++++++.+ |+.++.+.+.- .|+.+-+
T Consensus 315 v~~m~VsmLL~I-Rd~Llss~~~t-cL~~Lm~ 344 (625)
T KOG1091|consen 315 VACMFVSMLLYI-RDSLLSSEYQT-CLQYLMN 344 (625)
T ss_pred HHHHHHHHHHHH-HHHHHHhcchh-HHHHHhc
Confidence 335667777777 99988877655 5544433
No 14
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.94 E-value=1e-25 Score=226.23 Aligned_cols=189 Identities=20% Similarity=0.278 Sum_probs=165.7
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCCCcccccCh--hhHHHHHHHHHHHHhhCCCCCcCCChhHHHHHHHHhhcchhHHHHHH
Q 015414 163 DKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQ--ENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCF 240 (407)
Q Consensus 163 ~~~~~~~~~~~~~I~~Dv~RT~~~~~~f~~~--~~~~~L~~iL~ay~~~~~~igY~QGm~~i~a~ll~~~~~E~~aF~~f 240 (407)
.+...+..+..+.|..|..||||++++|+.. .++..|.++|.+|+..+|++|||||..++|+++|+.+ +|+.||-++
T Consensus 612 ~~llkqLte~qhAi~idlgrtfp~h~~~~~qlg~gqlsl~n~Lkayslld~e~gycqg~~fv~gvlllh~-~e~~afell 690 (948)
T KOG4436|consen 612 KELLKQLTEQQHAILIDLGRTFPTHPYFSDQLGLGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGVLLLHM-SEENAFELL 690 (948)
T ss_pred HHHHHHHHHHHHHHHHhhccccCCCHHHHhhccccHHHHHHHHHHhcccCccccccCcchhhhhhhHhhc-chhhHHHHH
Confidence 3455677778899999999999999999885 7899999999999999999999999999999999999 899999999
Q ss_pred HHHHHh--hccCccCCCChhhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCCcchhHHHHHHhcccCCChHhHHHHHHHHh
Q 015414 241 ERLMRR--LRGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMW 318 (407)
Q Consensus 241 ~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~ll~~~dp~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~vlriWD~~~ 318 (407)
..||.. ++..|.+ .+..++..++.+..++..+.++||+|++++.|.|.+|+.+||+|+|+..||+.-+.|++|.+|
T Consensus 691 k~LM~~r~~r~qy~p--dm~~lq~qmyqLsrl~hd~hrdlyn~le~~ei~pslyAapw~lt~fasQf~lGfvarvfd~~f 768 (948)
T KOG4436|consen 691 KFLMFDRGMRKQYRP--DMKKLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLTVFASQFPLGFVARVFDLIF 768 (948)
T ss_pred HHHHHHHhhHhhhch--HHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccChHHhhhHHHHHHHHhhCcchHHHHHHHHHH
Confidence 999976 4556644 466888999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCChhhHHHHHHHHHhhhhhccCCcchHHHHHhcC
Q 015414 319 ALEYDPHLFYLYEEAESAASTKSEGSKAKAKSIRQCG 355 (407)
Q Consensus 319 ~~~~~~~~~~~~~~l~~~~~~~il~~~~~~~~l~~~~ 355 (407)
..|. -.+|.+...++...+..++.+++.+.+...+.
T Consensus 769 lq~t-evifK~a~~llsv~k~~l~e~dn~e~i~d~~k 804 (948)
T KOG4436|consen 769 LQGT-EVIFKVALSLLSVHKQLLLEKDNFEEIVDFLK 804 (948)
T ss_pred hhcc-chhhhhHHHHHHhhHHHHHhhhhHHHHHHHHH
Confidence 9985 46777777777775677777776666654443
No 15
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=99.92 E-value=5.7e-25 Score=202.49 Aligned_cols=178 Identities=17% Similarity=0.184 Sum_probs=149.9
Q ss_pred HHHHHhhhhcCCCCCccc----ccChhhHHHHHHHHHHHHhhCCCCCcCCChhHHHHHHHHhhcchhHHHHHHHHHHHhh
Q 015414 172 TLHQIGLDVIRTDRTLVF----YEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRL 247 (407)
Q Consensus 172 ~~~~I~~Dv~RT~~~~~~----f~~~~~~~~L~~iL~ay~~~~~~igY~QGm~~i~a~ll~~~~~E~~aF~~f~~l~~~~ 247 (407)
.++|+..|+.|++...+. -.....++.|..++......+|++.|.||.||||.+||+++ .|.+|+-+...+....
T Consensus 96 d~nQV~LDv~RSl~rfppg~p~~~R~~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~~tfLLv~-gE~~Al~l~E~L~~~~ 174 (395)
T KOG2595|consen 96 DYNQVILDVERSLGRFPPGIPKELRLQLQKQLTELILRVLRKYPTLNYYQGYHDIVVTFLLVV-GELEALSLMEELSTLH 174 (395)
T ss_pred ccceEEEehhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCcchhcchhHHHHHHHHhh-hhHhhhHHHHHHHHHH
Confidence 467899999999855442 22225566777777666677899999999999999999999 7989999998887654
Q ss_pred ccCccCCCChhhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCCcchhHHHHHHhcccCC-ChHhHHHHHHHHhhhcCChhh
Q 015414 248 RGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREF-SFCDSLYLWEMMWALEYDPHL 326 (407)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~ll~~~dp~L~~hl~~~~i~~~~~~~~W~~tlF~~~l-~~~~vlriWD~~~~~~~~~~~ 326 (407)
..+|. .+++.+..+.+..+..+++..+|+||+.|++..+.+ +|+.+|++|+|+|.+ ++..++|++|+|++..+-..+
T Consensus 175 lrdfM-~~Tld~t~~qL~~i~~iIk~~nP~Ly~~l~~aevgt-lFaLsWllTWFaH~L~~~~~vvRlfD~Flas~pl~pi 252 (395)
T KOG2595|consen 175 LRDFM-LPTLDFTVRQLRLISPIIKEVNPELYQFLQSAEVGT-LFALSWLLTWFAHNLKDIRIVVRLFDFFLASHPLLPI 252 (395)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHhhcChHHHHHHHhhcccc-eehhhHHHHHHhhcchhHHHHHHHHHHHHhcCcchhH
Confidence 44453 456778899999999999999999999999988877 899999999999999 899999999999999888888
Q ss_pred HHHHHHHHHhhhhhccCCcchHHHHHh
Q 015414 327 FYLYEEAESAASTKSEGSKAKAKSIRQ 353 (407)
Q Consensus 327 ~~~~~~l~~~~~~~il~~~~~~~~l~~ 353 (407)
|...++++.+ +.+|+.|..+|..++.
T Consensus 253 yv~A~vvL~r-~~eIl~~~~dms~~H~ 278 (395)
T KOG2595|consen 253 YVYAAVVLYR-RSEILKCDCDMSLLHG 278 (395)
T ss_pred HHHHHHhhhh-HHHHHHHHhhhHHHHH
Confidence 8888888887 9999999888876643
No 16
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=99.91 E-value=3e-24 Score=211.62 Aligned_cols=264 Identities=23% Similarity=0.327 Sum_probs=195.9
Q ss_pred cCCCCCCCCCCCCCCCHHHHHhhcCCCCC------------c-cHHHHHHHHhhCCCCCCchHhhhhhhhCCCCCCCCHH
Q 015414 21 DVPKTRFKIKPGKTLSARKWQAAFTPEGQ------------L-DIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFD 87 (407)
Q Consensus 21 ~~~~~~~~~~~~~~lt~~~W~~~~~~~~~------------i-~~~~~l~~~~~~GIp~~~R~~vW~~LLg~~~~~~t~~ 87 (407)
..+...+..++...+|.++|..+..+... + .....+..+...|||...|+.+|..+++. +..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gip~~~r~~~W~l~~~~-~~~---- 164 (397)
T KOG1102|consen 90 KSDERIFKDKPLLSLTLDLWDVKLLEGEQELTALSSSWLKVILRRPLKLSRRVLVGIPDELRGLVWQLLLYA-VEE---- 164 (397)
T ss_pred ccccccccccccccccchhHHHHhhhhHHHHHHHHHHhhhhccccHHHHHHHhhccccHHHHHHHHHHhccc-Hhh----
Confidence 55566677778888999999888765322 1 12223566678899999999999999985 100
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccCCCcccccccccCCCCCCCCcccccccCCCCCCcchhHHHhhhcCCCchhHHH
Q 015414 88 EREEIRQRRRLQYSAWKEECHQIFPVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVI 167 (407)
Q Consensus 88 ~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (407)
.........|.... .... +
T Consensus 165 ---~~~~~~~~l~~~~~---~~~~-----------------------~-------------------------------- 183 (397)
T KOG1102|consen 165 ---SLFDSLDELYRLQL---DEPE-----------------------P-------------------------------- 183 (397)
T ss_pred ---hhhhhHHHHHHHhh---ccCC-----------------------C--------------------------------
Confidence 00000011111110 0000 0
Q ss_pred HHHHHHHHHhhhhcCCCCCcccccCh--hhHHHHHHHHHHHHhhCCCCCcCCChhHHHHHHHHhhcchhHHHHHHHHHHH
Q 015414 168 QWMLTLHQIGLDVIRTDRTLVFYEKQ--ENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMR 245 (407)
Q Consensus 168 ~~~~~~~~I~~Dv~RT~~~~~~f~~~--~~~~~L~~iL~ay~~~~~~igY~QGm~~i~a~ll~~~~~E~~aF~~f~~l~~ 245 (407)
...++| .|+.||+|.+..|+.. .+++.|.+|+.+|+.++|++||||||..++++++.++ .|++|||+++.+|.
T Consensus 184 ---~~~~~~-~d~~Rt~~~~~~f~~~~~~~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~-~ee~af~~lv~l~~ 258 (397)
T KOG1102|consen 184 ---HESEII-RDLSRTFPAHLLFRKRYGVGQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYL-PEEEAFPLLVKLMK 258 (397)
T ss_pred ---chhHHH-hhccCcCcchhhhhhhcCcccccccccchhhcccCCCcccccchhhHhhhhhccC-chhhhhhhhhhhhh
Confidence 012456 9999999999999874 6789999999999999999999999999999999998 58999999999998
Q ss_pred hhccCccCCCChhhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCCcchhHHHHHHhcccCCChHhHHHHHHHHhhhcCChh
Q 015414 246 RLRGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPH 325 (407)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~dp~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~vlriWD~~~~~~~~~~ 325 (407)
.....++ ..+..++...+..+..+++...|.++.|+...++...+|+.+|++|+|+..+|++.++|+||+++.+|. ..
T Consensus 259 ~~~~~~~-~~~~~~l~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~s~w~~t~f~~k~p~~~~~ri~d~~~~~g~-~i 336 (397)
T KOG1102|consen 259 NYGLDLL-SPGFSGLQRSFRQLQRLLKELIPKLLDHLLPQGIELSMYASQWFLTLFAAKFPLELVLRIWDALFVEGV-SI 336 (397)
T ss_pred ccchhcc-cccCCchhhhHHHHHHHHHHhChhhhhhccccccccceeccceeeEeeeccccHHHHHHHhHHHHHhch-HH
Confidence 7543444 566779999999999999999999999999999999999999999999999999999999999999993 33
Q ss_pred hHHHHHHHHHhhhhhccCCcchHHHHHhcCchh
Q 015414 326 LFYLYEEAESAASTKSEGSKAKAKSIRQCGKYE 358 (407)
Q Consensus 326 ~~~~~~~l~~~~~~~il~~~~~~~~l~~~~~~~ 358 (407)
++.+...+.....+.+.... .+..++.+....
T Consensus 337 ~~~~~~~l~~~~~~~~~~~~-~e~~~~~l~~~~ 368 (397)
T KOG1102|consen 337 LFRFSLALLKHKADDLLDLD-FESLLSYLRVDL 368 (397)
T ss_pred HHHHHHHHhhhhhHHHhhcc-HHHHHHHHhccc
Confidence 33333333333144444333 556666665543
No 17
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=8.6e-23 Score=177.33 Aligned_cols=190 Identities=20% Similarity=0.393 Sum_probs=151.7
Q ss_pred CHHHHHhhcCCCCCc--cHHHHHHHHhhCCCCCCchHhhhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 015414 36 SARKWQAAFTPEGQL--DIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPV 113 (407)
Q Consensus 36 t~~~W~~~~~~~~~i--~~~~~l~~~~~~GIp~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~ 113 (407)
...+|..+++..... ...+.++-.++.||||++|+.+|++|.|...+.. ++...|..+..+
T Consensus 74 ReskwL~mldnw~~~m~kk~~~ir~rcrkgippslr~Raw~ylsGa~~~~~----------~np~~~~~~~~~------- 136 (267)
T KOG2221|consen 74 RESKWLHMLDNWHEEMRKKQKKIRPRCRKGIPPSLRGRAWRYLSGAPSPPP----------KNPVVFDELGPA------- 136 (267)
T ss_pred hHHHHHHHHHHHHHHHHhccccccchhhcCCCcccchhHHHhhcCCCCCCC----------CCcchhhhccCC-------
Confidence 345899998764322 1223466778999999999999999999754332 123335443221
Q ss_pred cCCCcccccccccCCCCCCCCcccccccCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcCCCCCcccccCh
Q 015414 114 VGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQ 193 (407)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~RT~~~~~~f~~~ 193 (407)
-|.| ...+-|.+|+.|-||.+..|.+.
T Consensus 137 --------------pG~p---------------------------------------~t~e~i~kdl~rqfp~hemf~s~ 163 (267)
T KOG2221|consen 137 --------------PGDP---------------------------------------KTAEGIHKDLHRQFPFHEMFGSS 163 (267)
T ss_pred --------------CCCC---------------------------------------cchhhhccccccCCCcccccccc
Confidence 0111 13456999999999999999764
Q ss_pred --hhHHHHHHHHHHHHhhCCCCCcCCChhHHHHHHHHhhcchhHHHHHHHHHHHhhccCccCCCChhhHHHHHHHHHHHH
Q 015414 194 --ENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASIT 271 (407)
Q Consensus 194 --~~~~~L~~iL~ay~~~~~~igY~QGm~~i~a~ll~~~~~E~~aF~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll 271 (407)
.++..|+|+|.+|..++|+.||||+-.-|+++++..+ ++.+|||||+.+.+++.+.|+. ..+..++..-.++..|+
T Consensus 164 ~k~gkqelfr~lka~ti~~pe~g~cq~qapiaa~llmhm-p~rdaf~~~vqicekylqgy~~-sgleaiq~dg~il~~Ll 241 (267)
T KOG2221|consen 164 GKTGKQELFRVLKAYTIYKPEEGYCQAQAPIAAVLLMHM-PARDAFWCFVQICEKYLQGYYS-SGLEAIQNDGGILEGLL 241 (267)
T ss_pred cccchHHHHHHHHHHHHhCchhhhhhhhchHHHHHHhcc-cHHHHHHHHHHHHHHHcccccc-cchhhhhcccHHHHHHH
Confidence 6789999999999999999999999999999998888 7889999999999997776653 45667888889999999
Q ss_pred HhhCHHHHHHHHhCCCCCcchhHHHH
Q 015414 272 QVIDPKLHQHLETLGGGDYLFAFRML 297 (407)
Q Consensus 272 ~~~dp~L~~hl~~~~i~~~~~~~~W~ 297 (407)
++.+|-.|.|+...+++|.+|...||
T Consensus 242 kk~~~p~~rH~~~~kvdp~lym~ewF 267 (267)
T KOG2221|consen 242 KKASPPPYRHLGGDKVDPLLYMTEWF 267 (267)
T ss_pred HhcCCCCCcccccCCCCHHHhhhccC
Confidence 99999999999999999999999997
No 18
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=99.82 E-value=4.1e-20 Score=175.51 Aligned_cols=215 Identities=15% Similarity=0.154 Sum_probs=173.4
Q ss_pred HHHhhhhcCCCCCcccccC--hhhHHHHHHHHHHHHhhCCCCCcCC--ChhHHHHHHHHhhcchhHHHHHHHHHHHhhcc
Q 015414 174 HQIGLDVIRTDRTLVFYEK--QENLSKLWDILAVYAWVDRDVGYCQ--GMSDLCSPMIILLENEADAFWCFERLMRRLRG 249 (407)
Q Consensus 174 ~~I~~Dv~RT~~~~~~f~~--~~~~~~L~~iL~ay~~~~~~igY~Q--Gm~~i~a~ll~~~~~E~~aF~~f~~l~~~~~~ 249 (407)
.+|++|+.|-......-.+ .+....|..++..||. +.++.|.. |+-.+.-|++.+-.+..+.|-||..+++++.+
T Consensus 68 ~~lr~DC~~~~d~l~n~ee~~v~vv~dlES~iTfYCK-~Rn~~Y~~d~gWi~lL~pl~~L~lprsd~fN~F~ai~~kYIP 146 (669)
T KOG3636|consen 68 CALRNDCRKLADGLKNKEEDKVPVVSDLESFITFYCK-KRNMDYIKDIGWITLLEPLLLLNLPRSDEFNVFFAITTKYIP 146 (669)
T ss_pred hHHHHHHHHHHhhcCCchhhccchhHhhhhHhhhhhh-ccCCcccccccHHHHHHHHHHhcCCcchhhhhhHhhhhcccC
Confidence 3567777665443332222 1344578999999987 66788886 88889999999888999999999999998443
Q ss_pred CccCCCChhhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCCcchhHHHHHHhcccCCChHhHHHHHHHHhhhcCChhhHHH
Q 015414 250 NFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYL 329 (407)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~ll~~~dp~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~vlriWD~~~~~~~~~~~~~~ 329 (407)
.=... . ..-+..|+.||+.|||+|+.||....++|.+|+..||-+||+...+.+.+.-+||.|+-.+..+.+|+.
T Consensus 147 kdcrp----k-g~~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDPF~vffL 221 (669)
T KOG3636|consen 147 KDCRP----K-GQIFHLFRLLLQYHDPELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADPFLVFFL 221 (669)
T ss_pred CCCCC----C-CccchHHHHHHHhcCHHHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCceehHHH
Confidence 32221 1 135678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCCcch--HHHHHhcCchhhhhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhcc
Q 015414 330 YEEAESAASTKSEGSKAK--AKSIRQCGKYERENMKNGAKTSEAPLPISVFLVASVLKDKSSKLLQEARG 397 (407)
Q Consensus 330 ~~~l~~~~~~~il~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 397 (407)
..+++..+|++|+..+++ +++++.+.+- ...+.-++++++.+++++++.++|+..|+.+..+.-+
T Consensus 222 aliiLiNake~ILq~~sdsKEe~ikfLenm---p~~L~~eDvpDffsLAqyY~~KTP~sfrkD~~~~lfG 288 (669)
T KOG3636|consen 222 ALIILINAKEEILQVKSDSKEEAIKFLENM---PAQLSVEDVPDFFSLAQYYSDKTPESFRKDFHYILFG 288 (669)
T ss_pred HHHHhcccHHHHhhhccccHHHHHHHHHcC---chhcccccchhHHHHHHHHhhcChHHhhhhhhHhhhc
Confidence 999998889999876444 6666666543 3456667889999999999999999999998777644
No 19
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.54 E-value=5.1e-14 Score=142.72 Aligned_cols=212 Identities=17% Similarity=0.156 Sum_probs=167.3
Q ss_pred HHHHHhhCCCCCCchHhhhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcccccccccCCCCCCCC
Q 015414 55 TLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGSGKFITAPVVTEDGQPIQD 134 (407)
Q Consensus 55 ~l~~~~~~GIp~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (407)
.++.++.+|+|+..|..+|+.|+... +. ++. ...+.|.++.......
T Consensus 176 ~l~e~Ve~~~p~~frli~~qlLssat--d~-----~q~--~I~e~~sdl~~~s~~~------------------------ 222 (948)
T KOG4436|consen 176 KLKELVEGGIPMHFRLIRWQLLSSAT--DR-----EQA--LIFEDYSDLAPCSSQQ------------------------ 222 (948)
T ss_pred hhHHHHhcCCchHHHHHHHHHhcccc--cc-----hhh--HHHHHHHHHhhhcchh------------------------
Confidence 47788899999999999999998752 11 111 1234466665431100
Q ss_pred cccccccCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcCCCCCcccccCh-h--------hHHHHHHHHHH
Q 015414 135 PLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQ-E--------NLSKLWDILAV 205 (407)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~RT~~~~~~f~~~-~--------~~~~L~~iL~a 205 (407)
++ ....-.|..|+.||.+.+.+|+.. . +++.|+++..+
T Consensus 223 ----------------------------Ek-----~~~~~~Irrdi~~~~~eh~~fke~~s~~~~~~~~~~d~LfN~~K~ 269 (948)
T KOG4436|consen 223 ----------------------------EK-----ELHIGIIRRDIERTYPEHYFFKEQSSTVCSDIRFAQDQLFNVAKA 269 (948)
T ss_pred ----------------------------hh-----hHHHHHHHHHhhccCcceeeeccCccCCcchhHHHHHHHHHHHHH
Confidence 01 124457999999999999999875 2 48999999999
Q ss_pred HHhhCCCCCcCCChhHHHHHHHHhhcchhHHHHHHHHHHHhhccCccCCCChhhHHHHHHHHHHHHHhhCH-HHHHHHHh
Q 015414 206 YAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDP-KLHQHLET 284 (407)
Q Consensus 206 y~~~~~~igY~QGm~~i~a~ll~~~~~E~~aF~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~dp-~L~~hl~~ 284 (407)
|+....++|||||=+.+++.+++.+ +++.+|..++.+|...+..-...+.+..+...+..++...+...| +|+.|+.+
T Consensus 270 ~~~~~~E~ifsqGs~~m~Gll~l~~-~~E~assv~~~lm~~~rl~~l~kpe~~~l~~~~~q~e~~~q~~sp~dl~sH~~e 348 (948)
T KOG4436|consen 270 YSTKDLEVIFSQGSAFMVGLLLLQM-PVEEASSVKVQLMILYRLRELSKPEMEPLGLCMFQLECTNQDQSPMDLFSHFPE 348 (948)
T ss_pred HhhhhhhhhhccchHHHHHHHHhcC-cHHHHHHHHHHHHHhhcccccCCcccchhHHHHHhhcccccccchhHHhhcccc
Confidence 9999999999999999999887777 788999999999987554333455566677788889999999999 99999999
Q ss_pred CCCCCcchhHHHHHHhcccCCChHhHHHHHHHHhhhcCChhhHHHHHHH
Q 015414 285 LGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYEEA 333 (407)
Q Consensus 285 ~~i~~~~~~~~W~~tlF~~~l~~~~vlriWD~~~~~~~~~~~~~~~~~l 333 (407)
.+.+.++|...||++.|...||+...-++.|.+.++|.....-..++++
T Consensus 349 q~~h~S~~~rs~flt~~ltt~Pi~~a~r~~~~f~~egllk~fr~~ia~~ 397 (948)
T KOG4436|consen 349 QHFHTSMYARSWFLTNFLTTFPIFMAARISDTFSSEGLLKRFRDSIAYL 397 (948)
T ss_pred cCCCccHHHHHHHHHhhcccCchhhccccccccccccHHHHHhhhHHHH
Confidence 9999999999999999999999999999999999987544333334444
No 20
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]
Probab=99.31 E-value=1.7e-13 Score=132.24 Aligned_cols=227 Identities=26% Similarity=0.400 Sum_probs=172.0
Q ss_pred CCCCCCCCCCCCCCHHHHHhhcCCCCCccHHHHHHHHhhCCCCCCchHhhhhhhhCCCCCCCCHHHHHHHHHHHHHHHHH
Q 015414 23 PKTRFKIKPGKTLSARKWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSA 102 (407)
Q Consensus 23 ~~~~~~~~~~~~lt~~~W~~~~~~~~~i~~~~~l~~~~~~GIp~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~ 102 (407)
-++.-+++++.+||.+.|+++..+ ..+..-+.++..++||+....|+.+|+.+++.+..++...+-+.........|+.
T Consensus 519 ~~pD~pcda~~glt~~~W~qy~~d-~t~~e~~~l~~~~~g~~e~~~r~~~~p~~~~~~~~g~~~~~~d~~e~~~s~~y~~ 597 (813)
T KOG1648|consen 519 LIPDDPCDASAGLTEKFWKQYRAD-PTIEEWRVLEAEVRGRDEEAFRAARAPKAASPVREGSCDVFEDPNEPTCSQHYDR 597 (813)
T ss_pred cCCCCCCCccccccHHHHHHHhcC-CchHHHHHHHHHHhcccHHHHhhcccccccccccccccchhcCCCccHHHHHHHH
Confidence 346778999999999999999754 4676667789999999999999999999999887776544444444444555655
Q ss_pred HHHHhhhhccccCCCcccccccccCCCCCCCCcccccccCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcC
Q 015414 103 WKEECHQIFPVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIR 182 (407)
Q Consensus 103 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~R 182 (407)
.+-.+.+ ..++.|++|+.|
T Consensus 598 ~l~~~~~-------------------------------------------------------------~~~~~~~kd~e~ 616 (813)
T KOG1648|consen 598 NLITLFR-------------------------------------------------------------ANLHRIDKDVER 616 (813)
T ss_pred HHHHHHh-------------------------------------------------------------hheeeecchhhh
Confidence 4333321 245679999999
Q ss_pred CCCCcccccChhhHHHHHHHHHHHHhhCCCCCcCCChhHHHHHHHHhhcchhHHHHHHHHHHHhhccCccCCCChhhHHH
Q 015414 183 TDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVET 262 (407)
Q Consensus 183 T~~~~~~f~~~~~~~~L~~iL~ay~~~~~~igY~QGm~~i~a~ll~~~~~E~~aF~~f~~l~~~~~~~~~~~~~~~~~~~ 262 (407)
...+..+|.+..+.+. +++...|...+-+-||.|||.++.+|++..+++|+.+--||.-+|-+-+..|...+ ++..
T Consensus 617 ~~~~~~~fs~~~~les-~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~~~e~~s~~~~~q~~~~~q~~---~~~~ 692 (813)
T KOG1648|consen 617 CDRNLMFFSNKDNLES-RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFEDEALTLECFSLLMLRQRGKFPQRP---GMSK 692 (813)
T ss_pred CcchheeecCCcchhh-heeeeeeeccccccccccchhhccCCcCCChhhcccccCCCcHHHHHhcccCCCCC---Cccc
Confidence 9999999999888887 88889999989899999999999999999999888777788888877666664332 4444
Q ss_pred HHHHHHHHHHhhCHHHHHHHHhCCCCCcchhHHHHHHhcccCCChHhHHHHHHHHhhhc
Q 015414 263 QLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALE 321 (407)
Q Consensus 263 ~~~~~~~ll~~~dp~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~vlriWD~~~~~~ 321 (407)
.+-.+. +++..+|-.. -+. ..+-..++||+.-|.++++.+....+|..+++..
T Consensus 693 ~l~~~r-~~~v~~~l~s-~id----~~qa~~f~~~~~~~~~~~s~~~~~~~~~~~~~~~ 745 (813)
T KOG1648|consen 693 CLLNLR-LIQVVDPLIS-DID----YAQALSFRWFLLDFKRELSYECTYKVWEVIWAAQ 745 (813)
T ss_pred cccccc-chhhhcchhc-chh----hhhhcceeeeccCcccccCCCCcceeeEeecccc
Confidence 333333 5666666221 121 1223459999999999999999999999998853
No 21
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=8.9e-05 Score=68.34 Aligned_cols=138 Identities=12% Similarity=0.135 Sum_probs=98.4
Q ss_pred hhHHHHHHHHHHHHhhCCCCCcCCChhHHHHHHHHhhcchhHHHHHHHHHHHh--hccCccCCCChhhHHHHHHHHHHHH
Q 015414 194 ENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRR--LRGNFRCTESSVGVETQLSNLASIT 271 (407)
Q Consensus 194 ~~~~~L~~iL~ay~~~~~~igY~QGm~~i~a~ll~~~~~E~~aF~~f~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~ll 271 (407)
.+....+.||.+.+...|++++|..+..+++.+|...-+|+++|---+.++.- -....+ +.++......+..|..++
T Consensus 109 rgegavrkilKOGanqfpdisfcpalpavvalllhysideaecfekacrilacndpgrrli-dqsflafesscmtfgdlv 187 (559)
T KOG2801|consen 109 RGEGAVRKILLCLANQFPDISFCPALPAVVALLLHYSIDEAECFEKACRILACNDPGRRLI-DQSFLAFESSCMTFGDLV 187 (559)
T ss_pred cCchhHHHHHHHHhccCCCcccCcchHHHHHHHHHhcccHHHHHHHhheeeeecCcchhhh-hhHHHHHHhhhhhHHHHH
Confidence 45678899999999999999999999999998888878999888766665532 111111 233445566777888888
Q ss_pred HhhCHHHHHHHHhCCCCCcchhHHHHHHhcccCCChHhHHHHHHHHhhhcCChhhHHHHHHH
Q 015414 272 QVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYEEA 333 (407)
Q Consensus 272 ~~~dp~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~vlriWD~~~~~~~~~~~~~~~~~l 333 (407)
.++...-++.+....-+.......|-.-|| .++|+.-..|++|+|+.+|+.......++++
T Consensus 188 nkycqaahklmvavsedvlqvyadwqrwlf-gelplcyfarvfdvflvegykvlyrvalail 248 (559)
T KOG2801|consen 188 NKYCQAAHKLMVAVSEDVLQVYADWQRWLF-GELPLCYFARVFDVFLVEGYKVLYRVALAIL 248 (559)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHh-ccchHHHHHHHhhheeecchHHHHHHHHHHH
Confidence 888888777776443333333456666555 5789999999999999999765444444443
No 22
>PF14961 BROMI: Broad-minded protein
Probab=96.38 E-value=0.15 Score=56.26 Aligned_cols=185 Identities=10% Similarity=0.049 Sum_probs=118.4
Q ss_pred HHHHHHHhhCCCCCcCCChhHHHHHHHHhhcc-hhHHHHHHHHHHHhhccCc-----------cCC-----CChhhHHHH
Q 015414 201 DILAVYAWVDRDVGYCQGMSDLCSPMIILLEN-EADAFWCFERLMRRLRGNF-----------RCT-----ESSVGVETQ 263 (407)
Q Consensus 201 ~iL~ay~~~~~~igY~QGm~~i~a~ll~~~~~-E~~aF~~f~~l~~~~~~~~-----------~~~-----~~~~~~~~~ 263 (407)
+++..|..+...-+|. |..-.++.+++++.. -..+.-.+.+|-..+...| .+. .-.+.....
T Consensus 1088 ~~~~~~~~~~~~~~y~-g~DWFvstvfli~~Gd~e~~~~fL~~fS~ll~SaflW~pRlh~s~~l~~~~~~s~i~p~~~~~ 1166 (1296)
T PF14961_consen 1088 HILFEFIHFCLQGSYP-GHDWFVSTVFLIMLGDKERSLQFLQRFSRLLTSAFLWPPRLHASIHLPVDTAESGIHPVYFCS 1166 (1296)
T ss_pred HHHhhhhcccCCCCCC-CchhHHHHHHHHHcCChhHhHHHHHHHHHHHHHhHhccccccccccCCchhhhcCCCchhhhH
Confidence 3444444444444454 777777777777643 3344444433333221111 101 001122246
Q ss_pred HHHHHHHHHhhCHHHHHHHHhCCCCCcchhHHHHHHhcccCCChHhHHHHHHHHhhhcCChhhHHHHHHHHHhhhhhccC
Q 015414 264 LSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYEEAESAASTKSEG 343 (407)
Q Consensus 264 ~~~~~~ll~~~dp~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~vlriWD~~~~~~~~~~~~~~~~~l~~~~~~~il~ 343 (407)
+..++.+|+...|.+|.-|...|..|...|.+|+..+|=+.+++..++..-=+.+..|+++.+|++++++... ..+|+.
T Consensus 1167 ~~~vE~ll~~E~P~V~saf~~sg~tpsqi~~rW~~QcFWnyldW~eI~~y~~~cil~G~dyqvY~~VailkHl-q~~ilq 1245 (1296)
T PF14961_consen 1167 CHYVEMLLKAELPLVFSAFRMSGFTPSQICQRWLSQCFWNYLDWPEICHYIAICILYGPDYQVYICVAILKHL-QPEILQ 1245 (1296)
T ss_pred HHHHHHHHHhhccHHHHHHHHcCCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhcCccceeehhHHHHHHh-hHHHHH
Confidence 7889999999999999999999999999999999999999999999998888888899999999999999988 666653
Q ss_pred CcchHHHHHhcCchhhhhhhcCCCCCCCCc-chHHHHHHHHHHHHHHHHHHHhcc
Q 015414 344 SKAKAKSIRQCGKYERENMKNGAKTSEAPL-PISVFLVASVLKDKSSKLLQEARG 397 (407)
Q Consensus 344 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~l~~~~~~ 397 (407)
.- ..+.|+-|.+ ++.. .++. .-.+-+..+.-+..|..+++..++
T Consensus 1246 ~~-q~q~L~~flk---e~~l------~gF~~~~~~~yM~~Le~~yR~~vL~~m~~ 1290 (1296)
T PF14961_consen 1246 HT-QTQDLQVFLK---EEAL------RGFRVSDYLEYMENLEQRYRPRVLTDMRN 1290 (1296)
T ss_pred hh-hhchHHHHhh---hccc------cceeHHhHHHHHHHHHHHhHhHHHHHHHH
Confidence 32 2222222221 1111 1111 223456666667777777777653
No 23
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=83.99 E-value=0.58 Score=47.93 Aligned_cols=75 Identities=32% Similarity=0.460 Sum_probs=60.3
Q ss_pred CCHHHHHhhcCCCCCccHHH-HHHHHhhCCCCCCchHhhhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 015414 35 LSARKWQAAFTPEGQLDIGK-TLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQI 110 (407)
Q Consensus 35 lt~~~W~~~~~~~~~i~~~~-~l~~~~~~GIp~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~ 110 (407)
++.++|.....++++++... ....+.++|+-+.+|+.+|+.++++++.+.+..++...... ...|...+.+|...
T Consensus 148 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~qW~~~ 223 (488)
T KOG2197|consen 148 LTLEEYNSNAMREGRLDESVHQRERIFSGGLSKSLRAEVWKFLLDYSPWDSTTRERVSLRKL-TDEYFRLKLQWSST 223 (488)
T ss_pred chhhhhhhhhhhccccccchhhhheecccccccchhhhhhhhhhcccCcccccccccccccc-cccHhhhhhhheec
Confidence 78999999998888875322 23367788887799999999999999999998887777666 77888888887643
No 24
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=83.94 E-value=0.38 Score=47.15 Aligned_cols=33 Identities=52% Similarity=1.027 Sum_probs=31.5
Q ss_pred CCcCCChhHHHHHHHHhhcchhHHHHHHHHHHH
Q 015414 213 VGYCQGMSDLCSPMIILLENEADAFWCFERLMR 245 (407)
Q Consensus 213 igY~QGm~~i~a~ll~~~~~E~~aF~~f~~l~~ 245 (407)
+|..|||++++||+|.-..+|.++||||+.||.
T Consensus 566 vglmqgmsdlvapilaevldesdtfwcfvglmq 598 (781)
T KOG2224|consen 566 VGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQ 598 (781)
T ss_pred hhhhccchhhhhhHHHhhhccccchhhhhhhhc
Confidence 688899999999999999999999999999997
No 25
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=38.95 E-value=42 Score=23.05 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=33.8
Q ss_pred HHHHHHHhhCHHHHHHHHhCCCCCcchhHHHHHHhcccCC
Q 015414 266 NLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREF 305 (407)
Q Consensus 266 ~~~~ll~~~dp~L~~hl~~~~i~~~~~~~~W~~tlF~~~l 305 (407)
.|.++--++.|+--..|++.||+-+.-.++-+++||.+++
T Consensus 5 ~FmqIaMK~lPEak~~L~k~GIeLsme~~qP~m~L~~~VM 44 (56)
T PF10815_consen 5 EFMQIAMKYLPEAKEELDKKGIELSMEMLQPLMQLLTKVM 44 (56)
T ss_pred HHHHHHHHHhHHHHHHHHHcCccCCHHHHHHHHHHHHHHH
Confidence 3556677889999999999999999989999999987654
No 26
>PF08109 Antimicrobial14: Lactocin 705 family; InterPro: IPR012517 This family consists of lactocin 705 which is a bacteriocin produced by Lactobacillus casei CRL 705. Lactocin 705 is a class IIb bacteriocin, whose activity depends upon the complementation of two peptides (705-alpha and 705-beta) of 33 amino acid residues each. Lactocin 705 is active against several Gram-positive bacteria, including food-borne pathogens and is a good candidate to be used for biopreservation of fermented meats [].
Probab=32.50 E-value=33 Score=19.87 Aligned_cols=14 Identities=36% Similarity=0.667 Sum_probs=10.1
Q ss_pred CCcCCChhHHHHHH
Q 015414 213 VGYCQGMSDLCSPM 226 (407)
Q Consensus 213 igY~QGm~~i~a~l 226 (407)
-||.||+.+..--.
T Consensus 3 sgyiqgipdflkgy 16 (31)
T PF08109_consen 3 SGYIQGIPDFLKGY 16 (31)
T ss_pred cccccccHHHHHHH
Confidence 38999998766433
No 27
>KOG4631 consensus NADH:ubiquinone oxidoreductase, NDUFB3/B12 subunit [Energy production and conversion]
Probab=32.21 E-value=36 Score=26.09 Aligned_cols=26 Identities=23% Similarity=0.549 Sum_probs=20.5
Q ss_pred HHHHHHHHhhCCC-CCCchHhhhhhhh
Q 015414 52 IGKTLSRIHRGGI-HPSIRGEVWEFLL 77 (407)
Q Consensus 52 ~~~~l~~~~~~GI-p~~~R~~vW~~LL 77 (407)
..++-+++.+.|+ +|.+|.+||.+-=
T Consensus 25 L~~~~k~La~~GLkDPW~RNevwrY~~ 51 (100)
T KOG4631|consen 25 LETIQKKLAAKGLKDPWGRNEVWRYMG 51 (100)
T ss_pred HHHHHHHHHHccccCchhcchhhhccC
Confidence 3445678888998 6899999998764
No 28
>PF03556 Cullin_binding: Cullin binding; InterPro: IPR005176 The eukaryotic defective in cullin neddylation (DCN) protein family, may contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. These multi-protein complexes are required for polyubiquitination and subsequent degradation of target proteins by the 26S proteasome []. Proteins in the DCN family include: Yeast DCN1. Vertebrate DCN1-like protein 1. Vertebrate DCN1-like protein 2. Vertebrate DCN1-like protein 4. This entry represents a domain found within DCN family proteins. Its function is unknown but it has been suggested that it has the features of a basic helix-loop-helix leucine zipper (bHLH-ZIP) domain [].It is often found in association with a UBA-like domain (IPR009060 from INTERPRO).; PDB: 3TDI_A 2IS9_A 3O6B_E 3O2P_A 3BQ3_A 3TDZ_A 3TDU_B.
Probab=21.17 E-value=1.9e+02 Score=23.43 Aligned_cols=31 Identities=13% Similarity=0.338 Sum_probs=24.1
Q ss_pred chhHHHHHHhcccCCChHhHHHHHHHHhhhc
Q 015414 291 LFAFRMLMVLFRREFSFCDSLYLWEMMWALE 321 (407)
Q Consensus 291 ~~~~~W~~tlF~~~l~~~~vlriWD~~~~~~ 321 (407)
-|++.+...==.+.+++++++.+|+++|...
T Consensus 27 ~f~F~~~~~~~qr~l~~e~Ai~~W~llf~~~ 57 (117)
T PF03556_consen 27 RFTFDFAREEGQRSLPLETAIAYWRLLFSGR 57 (117)
T ss_dssp HHHHHHHS-TT-SSEEHHHHHHHHHHHTTTT
T ss_pred HHHHHHhCCcccCCCCHHHHHHHHHHHcCCC
Confidence 3677777666678999999999999999865
Done!