Query 015414
Match_columns 407
No_of_seqs 276 out of 1808
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 12:12:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015414.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015414hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qfz_A TBC1 domain family memb 100.0 5.3E-49 1.8E-53 383.8 23.7 262 36-358 25-313 (345)
2 1fkm_A Protein (GYP1P), ORF YO 100.0 2.7E-48 9.4E-53 384.2 26.7 226 37-321 8-261 (396)
3 2qq8_A TBC1 domain family memb 100.0 7.8E-47 2.7E-51 366.4 19.8 267 36-356 20-291 (334)
4 3qye_A TBC1 domain family memb 100.0 1.4E-47 4.8E-52 371.8 13.2 250 36-355 29-286 (331)
5 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 4.5E-46 1.5E-50 357.9 16.6 239 37-354 5-250 (310)
6 4hl4_A TBC1 domain family memb 100.0 8.7E-43 3E-47 332.1 18.0 237 36-351 19-262 (292)
7 3qwl_A TBC1 domain family memb 100.0 1.9E-37 6.3E-42 293.2 8.3 231 39-358 28-268 (294)
8 3kev_A Galieria sulfuraria DCU 25.9 1.3E+02 0.0045 25.7 6.1 58 255-321 75-132 (199)
9 3i5g_C Myosin catalytic light 22.2 84 0.0029 25.2 4.1 18 48-65 100-117 (159)
10 3tdu_A DCN1-like protein 1; E2 21.9 99 0.0034 26.5 4.6 58 256-322 74-131 (200)
11 4gba_A DCN1-like protein 3; E3 20.2 1.2E+02 0.0041 26.5 4.7 57 256-321 75-133 (221)
No 1
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=5.3e-49 Score=383.81 Aligned_cols=262 Identities=23% Similarity=0.359 Sum_probs=221.6
Q ss_pred CHHHHHhhcCCCCCccHHHHHHHHhhCCCCCCchHhhhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccC
Q 015414 36 SARKWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVG 115 (407)
Q Consensus 36 t~~~W~~~~~~~~~i~~~~~l~~~~~~GIp~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~ 115 (407)
..++|.++++.. .+|..+ ++.++++|||+++|+.||++|||++|.+. ++|+...++.++.|.++++++.....
T Consensus 25 r~~kw~~~l~~~-~~d~~~-Lr~l~~~GiP~~~R~~vW~~llg~~p~~~--~~~~~~l~~~~~~Y~~l~~~~~~~~~--- 97 (345)
T 2qfz_A 25 RLDKFKQLLAGP-NTDLEE-LRRLSWSGIPKPVRPMTWKLLSGYLPANV--DRRPATLQRKQKEYFAFIEHYYDSRN--- 97 (345)
T ss_dssp HHHHHHHHHHCS-BCCHHH-HHHHHTTCCCGGGHHHHHHHHTTSSCSBG--GGHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHcCC-CCCHHH-HHHHHHCCCCHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHHHHHHHHHhhcCCC---
Confidence 457999999764 478888 66677899999999999999999998765 57788888999999999987542100
Q ss_pred CCcccccccccCCCCCCCCcccccccCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcCCCCCcccccChhh
Q 015414 116 SGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQEN 195 (407)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~RT~~~~~~f~~~~~ 195 (407)
+ ....+..+||++||.||+|+ ++|+.+.+
T Consensus 98 -----------------------------------------------~---~~~~~~~~~I~~Dv~RT~p~-~~F~~~~~ 126 (345)
T 2qfz_A 98 -----------------------------------------------D---EVHQDTYRQIHIDIPRMSPE-ALILQPKV 126 (345)
T ss_dssp -----------------------------------------------------CHHHHHHHHHHGGGCSCH-HHHTSHHH
T ss_pred -----------------------------------------------c---cchHHHHHHHHHhCcccCCc-cccCCchH
Confidence 0 00113578999999999999 99999889
Q ss_pred HHHHHHHHHHHHhhCCCCCcCCChhHHHHHHHHhhc------------------------chhHHHHHHHHHHHhhccCc
Q 015414 196 LSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLE------------------------NEADAFWCFERLMRRLRGNF 251 (407)
Q Consensus 196 ~~~L~~iL~ay~~~~~~igY~QGm~~i~a~ll~~~~------------------------~E~~aF~~f~~l~~~~~~~~ 251 (407)
++.|+|||.+|+.+||++|||||||+|+|+|++++. +|++|||||+++|+++.++|
T Consensus 127 ~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~y 206 (345)
T 2qfz_A 127 TEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDNY 206 (345)
T ss_dssp HHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHHHHHHHHTSGGGS
T ss_pred HHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHHHHHHHHcccccc
Confidence 999999999999999999999999999999998874 38999999999999998877
Q ss_pred cCCCChhhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCCcchhHHHHHHhcccCCChHhHHHHHHHHhhhcCCh---hhHH
Q 015414 252 RCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDP---HLFY 328 (407)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~ll~~~dp~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~vlriWD~~~~~~~~~---~~~~ 328 (407)
.. +.+++...+..++.+|+.++|+||+||.+.|+++.+|+++||+|||++++|+++++||||.+|++|..+ .+|.
T Consensus 207 ~~--~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v 284 (345)
T 2qfz_A 207 TF--AQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYV 284 (345)
T ss_dssp ST--TCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHH
T ss_pred cc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 54 467999999999999999999999999999999999999999999999999999999999999998763 4555
Q ss_pred HHHHHHHhhhhhccCCcchHHHHHhcCchh
Q 015414 329 LYEEAESAASTKSEGSKAKAKSIRQCGKYE 358 (407)
Q Consensus 329 ~~~~l~~~~~~~il~~~~~~~~l~~~~~~~ 358 (407)
++|++... +++++.+.+..+++..+.++.
T Consensus 285 ~~AiL~~~-~~~ll~~~d~~~il~~L~~~p 313 (345)
T 2qfz_A 285 CAAFLVRW-RKEILEEKDFQELLLFLQNLP 313 (345)
T ss_dssp HHHHHHHT-HHHHHHCCCHHHHHHHHTSCS
T ss_pred HHHHHHHH-HHHHHhhCCHHHHHHHHHcCC
Confidence 66666665 888887666677776666553
No 2
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=2.7e-48 Score=384.23 Aligned_cols=226 Identities=26% Similarity=0.451 Sum_probs=201.1
Q ss_pred HHHHHhhcCCCCCccHHHHHHHHhhCCCCCCchHhhhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCC
Q 015414 37 ARKWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGS 116 (407)
Q Consensus 37 ~~~W~~~~~~~~~i~~~~~l~~~~~~GIp~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~ 116 (407)
.++|.+++...+.+|..+ +|.++++|||+.+|+.||++|||++|.+. ++|+..+++.++.|.++++++....
T Consensus 8 ~~kw~~lL~~~~~~d~~~-Lr~l~~~GIP~~lR~~vW~~LLg~~~~~~--~~~~~~l~~~~~~Y~~l~~~~~~~~----- 79 (396)
T 1fkm_A 8 ISKFDNILKDKTIINQQD-LRQISWNGIPKIHRPVVWKLLIGYLPVNT--KRQEGFLQRKRKEYRDSLKHTFSDQ----- 79 (396)
T ss_dssp HHHHHHHHSSCSBCCHHH-HHHHHTTCCCGGGHHHHHHHHTTCSCSBG--GGHHHHHHHHHHHHHHHHHHTSSSS-----
T ss_pred HHHHHHHHcCCCCCCHHH-HHHHHHcCCCHHHHHHHHHHHHCCCCCCh--hHHHHHHHHHHHHHHHHHHHHhhcc-----
Confidence 479999998876689888 66678899999999999999999998876 4677888999999999998753100
Q ss_pred CcccccccccCCCCCCCCcccccccCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcCCCCCcccccChhhH
Q 015414 117 GKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQENL 196 (407)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~RT~~~~~~f~~~~~~ 196 (407)
. ....+..+||++||.||+|++++|+.+.++
T Consensus 80 -------------------------------------------~------~~~~~~~~qI~~Dv~RT~p~~~~F~~~~~~ 110 (396)
T 1fkm_A 80 -------------------------------------------H------SRDIPTWHQIEIDIPRTNPHIPLYQFKSVQ 110 (396)
T ss_dssp -------------------------------------------C------STHHHHHHHHHHHGGGSSTTSGGGGSHHHH
T ss_pred -------------------------------------------C------cccHHHHHHHHHHhhhhCCCcccccCchHH
Confidence 0 001236789999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCcCCChhHHHHHHHHhhc------------------c----------hhHHHHHHHHHHHhhc
Q 015414 197 SKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLE------------------N----------EADAFWCFERLMRRLR 248 (407)
Q Consensus 197 ~~L~~iL~ay~~~~~~igY~QGm~~i~a~ll~~~~------------------~----------E~~aF~~f~~l~~~~~ 248 (407)
+.|+|||.+|+.+||++|||||||+|+|+||+++. + |++|||||++||+++.
T Consensus 111 ~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~ 190 (396)
T 1fkm_A 111 NSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQIT 190 (396)
T ss_dssp HHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccccchhhccchhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998762 1 8999999999999998
Q ss_pred cCccCCCChhhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCCcchhHHHHHHhcccCCChHhHHHHHHHHhhhc
Q 015414 249 GNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALE 321 (407)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~ll~~~dp~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~vlriWD~~~~~~ 321 (407)
++|.. +.+++...+..++.+|+.+||+||+||++.|+.+.+|+++||+|||+++||+++++||||.+|++|
T Consensus 191 ~~f~~--~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~eg 261 (396)
T 1fkm_A 191 DNYIH--GQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSET 261 (396)
T ss_dssp GGSST--TCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHhh--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHCC
Confidence 88854 467999999999999999999999999999999999999999999999999999999999999988
No 3
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.8e-47 Score=366.40 Aligned_cols=267 Identities=19% Similarity=0.259 Sum_probs=204.3
Q ss_pred CHHHHH-hhcCCCCCc-cHHHHHHHHhhCCCCCCchHhhhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 015414 36 SARKWQ-AAFTPEGQL-DIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPV 113 (407)
Q Consensus 36 t~~~W~-~~~~~~~~i-~~~~~l~~~~~~GIp~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~ 113 (407)
...+|. +++...+.+ +..+ ++.++++|||+++|+.||++++|+. .+.+.+.++...++.++.|..+........
T Consensus 20 ~~~~W~~~il~~w~~~~~~~~-lr~l~~~GIP~~lR~~vW~~llg~~-~~~~~~~y~~ll~~~~~~~~~~~~~~~~~~-- 95 (334)
T 2qq8_A 20 AVLTWNNEILPNWETMWCSRK-VRDLWWQGIPPSVRGKVWSLAIGNE-LNITHELFDICLARAKERWRSLSTGGSEVE-- 95 (334)
T ss_dssp HHHHHHHTTGGGCC--CCCHH-HHHHHHTCCCHHHHHHHHHHHHCCT-TCCCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHhHHhccChHH-HHHHHHCCCCHHHHHHHHHHHhCCc-cccCHHHHHHHHHHHHHHHHHhccccccCc--
Confidence 457898 577665554 5555 7888899999999999999999975 355666666666666666665433211000
Q ss_pred cCCCcccccccccCCCCCCCCcccccccCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcCCCCCcccccCh
Q 015414 114 VGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQ 193 (407)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~RT~~~~~~f~~~ 193 (407)
+++. +. ......+..+||++||.||+|++++|+..
T Consensus 96 ------------~~d~-----~~----------------------------~~~~~~~~~~~I~~Dv~RT~p~~~~F~~~ 130 (334)
T 2qq8_A 96 ------------NEDA-----GF----------------------------SAADREASLELIKLDISRTFPNLCIFQQG 130 (334)
T ss_dssp --------------------------------------------------------CCHHHHHHHHHHTSSGGGCSSSTT
T ss_pred ------------cccc-----cc----------------------------ccccchhHHHHHHHHHhhcCCCchhhcCC
Confidence 0000 00 00001125689999999999999999875
Q ss_pred -hhHHHHHHHHHHHHhhCCCCCcCCChhHHHHHHHHhhcchhHHHHHHHHHHHhhc--cCccCCCChhhHHHHHHHHHHH
Q 015414 194 -ENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLR--GNFRCTESSVGVETQLSNLASI 270 (407)
Q Consensus 194 -~~~~~L~~iL~ay~~~~~~igY~QGm~~i~a~ll~~~~~E~~aF~~f~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~l 270 (407)
++++.|+|||.+|+.+||++|||||||+|||+||+++ +|++|||||+++|++.. .+|. .+.+++...+..++.+
T Consensus 131 ~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~-~E~~aF~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~l 207 (334)
T 2qq8_A 131 GPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNL-DTADAFIAFSNLLNKPCQMAFFR--VDHGLMLTYFAAFEVF 207 (334)
T ss_dssp STTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHS-CHHHHHHHHHHHHTSHHHHHHHS--SCCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcC-CHHHHHHHHHHHHHhhhHHhccC--CChHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999999888 79999999999998753 3443 3456899999999999
Q ss_pred HHhhCHHHHHHHHhCCCCCcchhHHHHHHhcccCCChHhHHHHHHHHhhhcCChhhHHHHHHHHHhhhhhccCCcchHHH
Q 015414 271 TQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYEEAESAASTKSEGSKAKAKS 350 (407)
Q Consensus 271 l~~~dp~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~vlriWD~~~~~~~~~~~~~~~~~l~~~~~~~il~~~~~~~~ 350 (407)
|+.++|+||+||.+.|+++.+|+++||+|||++++|++.++||||++|++|..+.++.++|++... ++.++.++ ..++
T Consensus 208 l~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~~~l~~valaiL~~~-~~~Ll~~d-~~~i 285 (334)
T 2qq8_A 208 FEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLF-EDILTKMD-FIHM 285 (334)
T ss_dssp HHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT-HHHHHTCC-HHHH
T ss_pred HHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHhcCC-HHHH
Confidence 999999999999999999999999999999999999999999999999999877666666666666 88888764 3444
Q ss_pred HHhcCc
Q 015414 351 IRQCGK 356 (407)
Q Consensus 351 l~~~~~ 356 (407)
++.+.+
T Consensus 286 l~~L~~ 291 (334)
T 2qq8_A 286 AQFLTR 291 (334)
T ss_dssp HHHHHS
T ss_pred HHHHHh
Confidence 444433
No 4
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=1.4e-47 Score=371.78 Aligned_cols=250 Identities=22% Similarity=0.366 Sum_probs=205.1
Q ss_pred CHHHHHhhcCCCCC----ccHHHHHHHHhhCCCCCCchHhhhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 015414 36 SARKWQAAFTPEGQ----LDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIF 111 (407)
Q Consensus 36 t~~~W~~~~~~~~~----i~~~~~l~~~~~~GIp~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~ 111 (407)
+.++|.++++.+|+ .+..+ ++.++++|||+++|+.||++|+|+.+...+..+ .....+..|.++.++..
T Consensus 29 ~~~~W~~~l~~~~~~~~~~~~~~-l~~~~~~GIP~~lR~~vW~~Llg~~~~~~~~~~---~~~~~~~~Y~~l~~~~~--- 101 (331)
T 3qye_A 29 VTTVWEKMLSTPGRSKIKFDMEK-MHSAVGQGVPRHHRGEIWKFLAEQFHLKHQFPS---KQQPKDVPYKELLKQLT--- 101 (331)
T ss_dssp HHHHHHHHHTCTTGGGCCCCHHH-HHHHHHTCCCGGGHHHHHHHHHHHHHHHCCCCS---SSCCCCCCHHHHTTSCC---
T ss_pred HHHHHHHHhccCCCCcccCCHHH-HHHHHHcCCCHHHHHHHHHHHhCcchhhhcchh---hhhhchHHHHHHHHhcC---
Confidence 56789999988765 36666 777778999999999999999997431110000 00112234555543210
Q ss_pred cccCCCcccccccccCCCCCCCCcccccccCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcCCCCCccccc
Q 015414 112 PVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYE 191 (407)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~RT~~~~~~f~ 191 (407)
...++|++||.||+|++++|.
T Consensus 102 -----------------------------------------------------------~~~~~I~~Dv~Rt~~~~~~f~ 122 (331)
T 3qye_A 102 -----------------------------------------------------------SQQHAILIDLGRTFPTHPYFS 122 (331)
T ss_dssp -----------------------------------------------------------TTHHHHHHHHTTSSTTSTTTC
T ss_pred -----------------------------------------------------------CchhHHHHhhcccCCCchhhc
Confidence 023689999999999999998
Q ss_pred Ch--hhHHHHHHHHHHHHhhCCCCCcCCChhHHHHHHHHhhcchhHHHHHHHHHHHhh--ccCccCCCChhhHHHHHHHH
Q 015414 192 KQ--ENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRL--RGNFRCTESSVGVETQLSNL 267 (407)
Q Consensus 192 ~~--~~~~~L~~iL~ay~~~~~~igY~QGm~~i~a~ll~~~~~E~~aF~~f~~l~~~~--~~~~~~~~~~~~~~~~~~~~ 267 (407)
.+ .+++.|+|||.+|+.+||++|||||||+|+|+||+++ +|++|||||+.+|++. +..|. ++.+++...+..+
T Consensus 123 ~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~-~E~~aF~~l~~l~~~~~~~~~~~--~~~~~~~~~~~~l 199 (331)
T 3qye_A 123 AQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHM-SEEEAFKMLKFLMFDMGLRKQYR--PDMIILQIQMYQL 199 (331)
T ss_dssp STTCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTS-CHHHHHHHHHHHHTTTCGGGGGS--TTCHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHh-hHHHHHHHHHHHHHhcCchhcCC--CChHHHHHHHHHH
Confidence 86 7899999999999999999999999999999999888 7899999999999874 55554 4567999999999
Q ss_pred HHHHHhhCHHHHHHHHhCCCCCcchhHHHHHHhcccCCChHhHHHHHHHHhhhcCChhhHHHHHHHHHhhhhhccCCcch
Q 015414 268 ASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYEEAESAASTKSEGSKAK 347 (407)
Q Consensus 268 ~~ll~~~dp~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~vlriWD~~~~~~~~~~~~~~~~~l~~~~~~~il~~~~~ 347 (407)
+.+|+.++|+||+||.+.|+.+.+|+++||+|+|++++|++.++||||++|++|..+.++.+++++... ++.++.+++.
T Consensus 200 ~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~-~~~ll~~~~~ 278 (331)
T 3qye_A 200 SRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSH-KPLILQHENL 278 (331)
T ss_dssp HHHHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHT-HHHHHTCCSH
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHH-HHHHhcCCCH
Confidence 999999999999999999999999999999999999999999999999999999987777777777777 9999988777
Q ss_pred HHHHHhcC
Q 015414 348 AKSIRQCG 355 (407)
Q Consensus 348 ~~~l~~~~ 355 (407)
+++++.+.
T Consensus 279 ~~il~~l~ 286 (331)
T 3qye_A 279 ETIVDFIK 286 (331)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77765443
No 5
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.5e-46 Score=357.93 Aligned_cols=239 Identities=20% Similarity=0.343 Sum_probs=200.3
Q ss_pred HHHHHhhcCCCCCc---cHHHHHHHHhhCCCCCCchHhhhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 015414 37 ARKWQAAFTPEGQL---DIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPV 113 (407)
Q Consensus 37 ~~~W~~~~~~~~~i---~~~~~l~~~~~~GIp~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~ 113 (407)
.++|.+++++.+.. +..+ ++.++++|||+++|+.||+.|+|+.+. ...++.|..++++..
T Consensus 5 ~~~W~~~~~~w~~~~~~~~~~-l~~l~~~GIP~~lR~~vW~~llg~~~~-----------~~~~~~Y~~l~~~~~----- 67 (310)
T 3hzj_A 5 LYSWGELLGKWHSNLGARPKG-LSTLVKSGVPEALRAEVWQLLAGCHDN-----------QAMLDRYRILITKDS----- 67 (310)
T ss_dssp -CCHHHHHHHHHTSTTSCCTT-HHHHHHHCCCGGGHHHHHHHHTTCCCC-----------HHHHHHHHHHTTSCC-----
T ss_pred HHHHHHHHHHHhhhcccCHHH-HHHHHHCCCCHHHHHHHHHHHHCCCcc-----------hhHHHHHHHHHhccC-----
Confidence 46788888765332 3344 777788999999999999999998653 122345776643200
Q ss_pred cCCCcccccccccCCCCCCCCcccccccCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcCCCCCcccccCh
Q 015414 114 VGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQ 193 (407)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~RT~~~~~~f~~~ 193 (407)
...++|++||.||+|++++|+..
T Consensus 68 ---------------------------------------------------------~~~~~I~~Dv~Rt~p~~~~f~~~ 90 (310)
T 3hzj_A 68 ---------------------------------------------------------AQESVITRDIHRTFPAHDYFKDT 90 (310)
T ss_dssp ---------------------------------------------------------TTHHHHHHHHTTSSTTSTTTSST
T ss_pred ---------------------------------------------------------CcHHHHHHHHHhhCCCchhhcCC
Confidence 02468999999999999999876
Q ss_pred --hhHHHHHHHHHHHHhhCCCCCcCCChhHHHHHHHHhhcchhHHHHHHHHHHHh--hccCccCCCChhhHHHHHHHHHH
Q 015414 194 --ENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRR--LRGNFRCTESSVGVETQLSNLAS 269 (407)
Q Consensus 194 --~~~~~L~~iL~ay~~~~~~igY~QGm~~i~a~ll~~~~~E~~aF~~f~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~ 269 (407)
.+++.|+|||.+|+.+||++|||||||+|||+||+++ +|++|||||+++|++ +++.| .++++++...+..++.
T Consensus 91 ~~~~~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~-~e~~aF~~l~~l~~~~~~~~~~--~~~~~~~~~~~~~l~~ 167 (310)
T 3hzj_A 91 GGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHM-PEEQAFCVLVKIMYDYGLRDLY--RNNFEDLHCKFYQLER 167 (310)
T ss_dssp TSHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHS-CHHHHHHHHHHHHHTSCGGGGT--HHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhC-CHHHHHHHHHHHHhcccccccc--cccHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999998 899999999999987 45555 3457789999999999
Q ss_pred HHHhhCHHHHHHHHhCCCCCcchhHHHHHHhcccCCChHhHHHHHHHHhhhcCChhhHHHHHHHHHhhhhhccCCcchHH
Q 015414 270 ITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYEEAESAASTKSEGSKAKAK 349 (407)
Q Consensus 270 ll~~~dp~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~vlriWD~~~~~~~~~~~~~~~~~l~~~~~~~il~~~~~~~ 349 (407)
+|+.++|+||+||.+.|+++.+|+++||+|+|++++|++.++||||++|++|..+.++.+++++... +++++.+ +..+
T Consensus 168 ll~~~~p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~~l~~v~lail~~~-~~~Ll~~-d~~~ 245 (310)
T 3hzj_A 168 LMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTS-KEDLLQA-DFEG 245 (310)
T ss_dssp HHHHHCHHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHT-HHHHHTC-CHHH
T ss_pred HHHHhChHHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHH-HHHHHcC-CHHH
Confidence 9999999999999999999999999999999999999999999999999999888777666666666 9999987 4566
Q ss_pred HHHhc
Q 015414 350 SIRQC 354 (407)
Q Consensus 350 ~l~~~ 354 (407)
+++.+
T Consensus 246 ~l~~l 250 (310)
T 3hzj_A 246 ALKFF 250 (310)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66655
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=8.7e-43 Score=332.06 Aligned_cols=237 Identities=19% Similarity=0.216 Sum_probs=190.1
Q ss_pred CHHHHHhhcCCCCCccHHHHHHHHhhC-C-CCCCchHhhhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 015414 36 SARKWQAAFTPEGQLDIGKTLSRIHRG-G-IHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPV 113 (407)
Q Consensus 36 t~~~W~~~~~~~~~i~~~~~l~~~~~~-G-Ip~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~ 113 (407)
..+++++++.. +.+|.+++++.++.+ | +|+++|+.||++|+|+.+...+.. |....
T Consensus 19 k~~~i~~~l~~-~~~dl~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~~~------------~~~~~--------- 76 (292)
T 4hl4_A 19 KVAEIHQALNS-DPTDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPPI------------SGKNL--------- 76 (292)
T ss_dssp HHHHHHHHHTS-SSCCHHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCCSC------------CCTTH---------
T ss_pred HHHHHHHHHcC-CcccHHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCCCc------------hhhhh---------
Confidence 34578888854 558999855444432 3 789999999999999976644211 11000
Q ss_pred cCCCcccccccccCCCCCCCCcccccccCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcCCCCCcccccC-
Q 015414 114 VGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEK- 192 (407)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~RT~~~~~~f~~- 192 (407)
....+..+||++||.||+++++.|..
T Consensus 77 -----------------------------------------------------~~~~~~~~qI~~Dv~RT~~~~~~~~~~ 103 (292)
T 4hl4_A 77 -----------------------------------------------------RQMSKDYQQVLLDVRRSLRRFPPGMPE 103 (292)
T ss_dssp -----------------------------------------------------HHHCTTHHHHHHHHHTTGGGSCTTSCH
T ss_pred -----------------------------------------------------cccchhHHHHHHhhhhhhhhccCCCCH
Confidence 00112467999999999999988754
Q ss_pred ---hhhHHHHHHHHHHHHhhCCCCCcCCChhHHHHHHHHhhcchhHHHHHHHHHHHhhccCccCCCChhhHHHHHHHHHH
Q 015414 193 ---QENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLAS 269 (407)
Q Consensus 193 ---~~~~~~L~~iL~ay~~~~~~igY~QGm~~i~a~ll~~~~~E~~aF~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (407)
...++.|.|||.+|+.+||++|||||||+|||+||+++ +|++|||||+++|+...+.|+ .+++.++...+..++.
T Consensus 104 ~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~-~e~~aF~~l~~l~~~~l~~~~-~~~~~~~~~~~~~l~~ 181 (292)
T 4hl4_A 104 EQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVV-GERLATSLVEKLSTHHLRDFM-DPTMDNTKHILNYLMP 181 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHH-CHHHHHHHHHHHHHTTTTGGG-CSSSCTTTGGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999887 899999999999997554443 3456688889999999
Q ss_pred HHHhhCHHHHHHHHhCCCCCcchhHHHHHHhcccCCC-hHhHHHHHHHHhhhcCChhhHHHHHHHHHhhhhhccCCcchH
Q 015414 270 ITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFS-FCDSLYLWEMMWALEYDPHLFYLYEEAESAASTKSEGSKAKA 348 (407)
Q Consensus 270 ll~~~dp~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~-~~~vlriWD~~~~~~~~~~~~~~~~~l~~~~~~~il~~~~~~ 348 (407)
+|+.++|+||+||++.++. .+|+++||+|+|++++| ++.++||||++|++|..+.+|.++++++.. +++++.++.++
T Consensus 182 ll~~~~P~L~~hL~~~~i~-~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~~~~~~v~~ail~~~-~~~Ll~~~~d~ 259 (292)
T 4hl4_A 182 IIDQVNPELHDFMQSAEVG-TIFALSWLITWFGHVLSDFRHVVRLYDFFLACHPLMPIYFAAVIVLYR-EQEVLDCDCDM 259 (292)
T ss_dssp HHHHHCHHHHHHHC-CCCC-SGGGHHHHHTTTTTTSCCHHHHHHHHHHHHHSCTTHHHHHHHHHHHHT-HHHHHTSCCST
T ss_pred HHHHHCHHHHHHHHHcCCC-cchHHHHHHHHHhhhcCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-HHHHHcCCCCH
Confidence 9999999999999999994 69999999999999996 999999999999999888888777777776 89999876554
Q ss_pred HHH
Q 015414 349 KSI 351 (407)
Q Consensus 349 ~~l 351 (407)
..+
T Consensus 260 ~~l 262 (292)
T 4hl4_A 260 ASV 262 (292)
T ss_dssp THH
T ss_pred HHH
Confidence 433
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.9e-37 Score=293.18 Aligned_cols=231 Identities=15% Similarity=0.160 Sum_probs=180.9
Q ss_pred HHHhhcCCCCCccHHHHHHHHhhCCCCCCchHhhhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCc
Q 015414 39 KWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGSGK 118 (407)
Q Consensus 39 ~W~~~~~~~~~i~~~~~l~~~~~~GIp~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~ 118 (407)
..+.++. +..+|.+++.+.+++||||+.+|+.||++|+|++|.++ +.|+.++++++++|.+++++...
T Consensus 28 ~~~~ll~-~~~~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~--~~~~~~l~~kr~eY~~l~~~~~~--------- 95 (294)
T 3qwl_A 28 SLEILLK-DDRLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHH--ESHAKVMMYRKEQYLDVLHALKV--------- 95 (294)
T ss_dssp HHHHHTT-SSBCCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBG--GGHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHhc-CCCCCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCc--hhHHHHHHHHHHHHHHHHHhhhh---------
Confidence 4666654 47789999555655555999999999999999999987 56889999999999999886331
Q ss_pred ccccccccCCCCCCCCcccccccCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcCCCCCcccccChhhHHH
Q 015414 119 FITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQENLSK 198 (407)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~RT~~~~~~f~~~~~~~~ 198 (407)
.++|+.+. |-+
T Consensus 96 ------------------------------------------------------~r~I~~~t----P~~----------- 106 (294)
T 3qwl_A 96 ------------------------------------------------------VRFVSDAT----PQA----------- 106 (294)
T ss_dssp ------------------------------------------------------TTSCCTTS----CHH-----------
T ss_pred ------------------------------------------------------hhhhhccC----chH-----------
Confidence 12222211 111
Q ss_pred HHHHHHHHHhh----------CCCCCcCCChhHHHHHHHHhhcchhHHHHHHHHHHHhhccCccCCCChhhHHHHHHHHH
Q 015414 199 LWDILAVYAWV----------DRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLA 268 (407)
Q Consensus 199 L~~iL~ay~~~----------~~~igY~QGm~~i~a~ll~~~~~E~~aF~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (407)
...+..|... +++ .++|||..|+++++.++.+|++|||||++||+++.++|.. +.+|++.. ++
T Consensus 107 -~vfl~~~~~~~~~l~~~~~~~~~-~~~~~~~~Iaa~ll~l~~~E~dAFW~f~~Lm~~l~~~f~~--~~~gl~~~---l~ 179 (294)
T 3qwl_A 107 -EVYLRMYQLESGKLPRSPSFPLE-PDDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQLNTKYRD--SLPQLPKA---FE 179 (294)
T ss_dssp -HHHHHHHHHHHTCCCSSTTSCCC-HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTTTTT--TGGGHHHH---HH
T ss_pred -HHHHHHHHcccccccccccCCcc-cchhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhCC--ChhHHHHH---HH
Confidence 1111112111 222 2559999999999999999999999999999998888854 46688765 48
Q ss_pred HHHHhhCHHHHHHHHhCCCCCcchhHHHHHHhcccCCChHhHHHHHHHHhhhcCChhhHHHHHHHHHhhhhhccCCcchH
Q 015414 269 SITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYEEAESAASTKSEGSKAKA 348 (407)
Q Consensus 269 ~ll~~~dp~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~vlriWD~~~~~~~~~~~~~~~~~l~~~~~~~il~~~~~~ 348 (407)
.+|+.+||+||+||++.|+.+.+++.+||+|+|++++|+++++||||.+|++|..+.++.++|++... ++.++.++...
T Consensus 180 ~LL~~~dP~L~~HL~~~~i~~~~~~~rWfl~lF~~~~p~~~vlRlWD~~~~~~~~~l~~valAiL~~~-r~~Ll~~~~~~ 258 (294)
T 3qwl_A 180 QYLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAVEILLTF-KIKVMALNSAE 258 (294)
T ss_dssp HHHHHHCHHHHHHHHHTTCGGGSCHHHHHTSTTTTTSCHHHHHHHHHHHHTTCSTHHHHHHHHHHHHT-HHHHHHCCSHH
T ss_pred HHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHH-HHHHhCCCCHH
Confidence 99999999999999999998888777999999999999999999999999998888888888888887 99999887766
Q ss_pred HHHHhcCchh
Q 015414 349 KSIRQCGKYE 358 (407)
Q Consensus 349 ~~l~~~~~~~ 358 (407)
.+++.+.+++
T Consensus 259 ~il~~Lq~lp 268 (294)
T 3qwl_A 259 KITKFLENIP 268 (294)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHcCC
Confidence 7666665543
No 8
>3kev_A Galieria sulfuraria DCUN1 domain-containing prote; cullin, neddylation, DCN-1, center for eukaryotic structural genomics, PSI; HET: CSO MSE; 1.30A {Galdieria sulphuraria}
Probab=25.92 E-value=1.3e+02 Score=25.72 Aligned_cols=58 Identities=19% Similarity=0.274 Sum_probs=41.2
Q ss_pred CChhhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCCcchhHHHHHHhcccCCChHhHHHHHHHHhhhc
Q 015414 255 ESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALE 321 (407)
Q Consensus 255 ~~~~~~~~~~~~~~~ll~~~dp~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~vlriWD~~~~~~ 321 (407)
++...++..+..+..-| .+|..++.+- -|++.+..--=.+.+++++++..|+.+|...
T Consensus 75 dsi~~lk~~l~~l~~~l--~d~~~Fk~~Y-------~ftF~~~re~gqk~L~~e~Ai~~W~lll~~~ 132 (199)
T 3kev_A 75 DSLEKLKRKLSSLRKEI--EDPSKFRAFY-------QFVFQYSKEPSQRSLPAETAMALWDVLLRGR 132 (199)
T ss_dssp CSHHHHHHHHHHHHHHT--TSHHHHHHHH-------HHHHHHHSCTTCSSBCHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHc--cCHHHHHHHH-------HHHHHHHcCcCcCCCCHHHHHHHHHHHhCCc
Confidence 34556666666665554 5777766665 3777776655567899999999999999754
No 9
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=22.22 E-value=84 Score=25.24 Aligned_cols=18 Identities=11% Similarity=0.115 Sum_probs=9.7
Q ss_pred CCccHHHHHHHHhhCCCC
Q 015414 48 GQLDIGKTLSRIHRGGIH 65 (407)
Q Consensus 48 ~~i~~~~~l~~~~~~GIp 65 (407)
|.|+..++.+.+..-|.+
T Consensus 100 G~I~~~el~~~l~~~g~~ 117 (159)
T 3i5g_C 100 GLISSAEIRNVLKMLGER 117 (159)
T ss_dssp SEECHHHHHHHHHHSSSC
T ss_pred CcCcHHHHHHHHHHhCCC
Confidence 556666655555455543
No 10
>3tdu_A DCN1-like protein 1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_A 4gao_A*
Probab=21.90 E-value=99 Score=26.51 Aligned_cols=58 Identities=10% Similarity=0.223 Sum_probs=40.9
Q ss_pred ChhhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCCcchhHHHHHHhcccCCChHhHHHHHHHHhhhcC
Q 015414 256 SSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEY 322 (407)
Q Consensus 256 ~~~~~~~~~~~~~~ll~~~dp~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~vlriWD~~~~~~~ 322 (407)
+...++..+..+..-| .+|..++.+- -|++.+..--=.+.+++++++..|+.+|...+
T Consensus 74 si~~lk~~l~~l~~~l--~d~~~Fk~~Y-------~ftF~~~r~~gqk~L~~e~Ai~~W~lll~~~~ 131 (200)
T 3tdu_A 74 SIEKLKAQIPKMEQEL--KEPGRFKDFY-------QFTFNFAKNPGQKGLDLEMAIAYWNLVLNGRF 131 (200)
T ss_dssp SHHHHHHTHHHHHHHT--TSHHHHHHHH-------HHHHHHHSCTTCSSEEHHHHHHHHHHHSTTSC
T ss_pred cHHHHHHHHHHHHHHc--cCHHHHHHHH-------HHHHHHHcCcCcCcCCHHHHHHHHHHHcCCCc
Confidence 4445666666555555 4777666665 37777776555678899999999999998654
No 11
>4gba_A DCN1-like protein 3; E3 ligase, ligase-peptide complex; HET: AME; 2.40A {Homo sapiens}
Probab=20.20 E-value=1.2e+02 Score=26.46 Aligned_cols=57 Identities=16% Similarity=0.246 Sum_probs=40.0
Q ss_pred ChhhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCCcchhHHHHHH--hcccCCChHhHHHHHHHHhhhc
Q 015414 256 SSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMV--LFRREFSFCDSLYLWEMMWALE 321 (407)
Q Consensus 256 ~~~~~~~~~~~~~~ll~~~dp~L~~hl~~~~i~~~~~~~~W~~t--lF~~~l~~~~vlriWD~~~~~~ 321 (407)
+...++..+..+..-| .+|..++.+- -|++.+... ==.+.++++.++-.|+++|..+
T Consensus 75 si~~lk~~l~~L~~~l--~d~~~Fk~~Y-------~ftF~~~~~~e~gqk~L~le~Ai~~W~Lll~~~ 133 (221)
T 4gba_A 75 SIDGICARFPSLLTEA--KQEDKFKDLY-------RFTFQFGLDSEEGQRSLHREIAIALWKLVFTQN 133 (221)
T ss_dssp SHHHHHHHHHHHHHHT--TSHHHHHHHH-------HHHHHHHSCTTTTCSSEEHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHHc--cCHHHHHHHH-------HHHHHHHhcCCccccCCCHHHHHHHHHHHcCCC
Confidence 4445666555555555 5777776665 367776655 4567889999999999999863
Done!