BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015415
(407 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OZL|B Chain B, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|D Chain D, Human Pyruvate Dehydrogenase S264e Variant
Length = 341
Score = 233 bits (595), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 118/324 (36%), Positives = 200/324 (61%), Gaps = 5/324 (1%)
Query: 86 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENS 145
++ + +A+ +G++EE++RD V ++GE+V Y G+YKV++GL KYGD R++DTPI+E
Sbjct: 14 QVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMG 73
Query: 146 FTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXX 205
F G+ +GAAM GLRPI E M F + A +Q+ N+ +Y SGG
Sbjct: 74 FAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGAS 133
Query: 206 XQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKER 265
+ A+HSQ +++ PG+++V+ +AKGL+K+AIR NPV++ E+ L+Y +
Sbjct: 134 AGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFE 193
Query: 266 IPDE----EYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSL 321
P E +++ + +A++ R G H+T++++SR H ++AA L +G + EVI++R++
Sbjct: 194 FPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTI 253
Query: 322 KPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITEN-FHDYLDAPIVCLSSQDVP 380
+P D+ TI S+ KT+ ++ VE G+GA + A I E ++LDAP V ++ DVP
Sbjct: 254 RPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVP 313
Query: 381 TPYAGTLEEWTVVQPAQIVTAVEQ 404
PYA LE+ ++ Q I+ A+++
Sbjct: 314 MPYAKILEDNSIPQVKDIIFAIKK 337
>pdb|3EXE|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|J Chain J, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|L Chain L, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|N Chain N, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|P Chain P, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|R Chain R, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|T Chain T, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|V Chain V, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|X Chain X, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Z Chain Z, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|2 Chain 2, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|4 Chain 4, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|6 Chain 6, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXI|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 329
Score = 233 bits (594), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 118/324 (36%), Positives = 200/324 (61%), Gaps = 5/324 (1%)
Query: 86 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENS 145
++ + +A+ +G++EE++RD V ++GE+V Y G+YKV++GL KYGD R++DTPI+E
Sbjct: 2 QVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMG 61
Query: 146 FTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXX 205
F G+ +GAAM GLRPI E M F + A +Q+ N+ +Y SGG
Sbjct: 62 FAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGAS 121
Query: 206 XQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKER 265
+ A+HSQ +++ PG+++V+ +AKGL+K+AIR NPV++ E+ L+Y +
Sbjct: 122 AGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFE 181
Query: 266 IPDE----EYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSL 321
P E +++ + +A++ R G H+T++++SR H ++AA L +G + EVI++R++
Sbjct: 182 FPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTI 241
Query: 322 KPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITEN-FHDYLDAPIVCLSSQDVP 380
+P D+ TI S+ KT+ ++ VE G+GA + A I E ++LDAP V ++ DVP
Sbjct: 242 RPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVP 301
Query: 381 TPYAGTLEEWTVVQPAQIVTAVEQ 404
PYA LE+ ++ Q I+ A+++
Sbjct: 302 MPYAKILEDNSIPQVKDIIFAIKK 325
>pdb|1UM9|B Chain B, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|D Chain D, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 324
Score = 228 bits (582), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 119/299 (39%), Positives = 177/299 (59%), Gaps = 1/299 (0%)
Query: 87 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSF 146
+ + +AL L+EEM +DP V V+GEDVG GG + VT+GL KYG RV+DTP++E +
Sbjct: 4 MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAI 63
Query: 147 TGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXX 206
G +G A GLRP+ E ++ F+Q+ + L Y SGGQFT
Sbjct: 64 VGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGGV 123
Query: 207 QLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKER 265
+ G HSQ E++F G+++VA STPY+AKGL+KAAIR E+PV+ E LY ++KE
Sbjct: 124 RGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRSVKEE 183
Query: 266 IPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFD 325
+P+E+Y + +A + R G+ +T++ Y + V+QAA L G EV+D+R+L P+D
Sbjct: 184 VPEEDYTLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLRTLMPWD 243
Query: 326 LYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYA 384
+ NS+ KT RV++V + R + + A I E+ D L AP + ++ D P PYA
Sbjct: 244 YEAVMNSVAKTGRVVLVSDAPRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYA 302
>pdb|1IK6|A Chain A, 3d Structure Of The E1beta Subunit Of Pyruvate
Dehydrogenase From The Archeon Pyrobaculum Aerophilum
Length = 369
Score = 215 bits (548), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 115/321 (35%), Positives = 186/321 (57%), Gaps = 7/321 (2%)
Query: 89 LFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTG 148
+ +A+ L EEM+RD V V+GEDVG GG + VT+GL +++G RV+DTP+ E G
Sbjct: 53 MAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTPLNEGGILG 112
Query: 149 MGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQL 208
+G AM GL+P+ E + F+ L +++ N+ L Y SGG + +
Sbjct: 113 FAMGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTRG 172
Query: 209 GAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNL-KERIP 267
G HS E+ F PG+ +V STPYNAKGL+KAAIR ++PV+ E +LY +E +P
Sbjct: 173 GLYHSNSPEAIFVHTPGLVVVMPSTPYNAKGLLKAAIRGDDPVVFLEPKILYRAPREEVP 232
Query: 268 DEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLY 327
+ +Y+ + +A + R G+ VT++TY + + ++AA+ + EV+D+++L P D
Sbjct: 233 EGDYVVEIGKARVAREGDDVTLVTYGAVVHKALEAAERV---KASVEVVDLQTLNPLDFD 289
Query: 328 TIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVP-TPYAGT 386
T+ S+ KT R++I + +TGG+GA + A + E D L AP++ L+ DVP +P A
Sbjct: 290 TVLKSVSKTGRLIIAHDSPKTGGLGAEVRALVAEKALDRLTAPVIRLAGPDVPQSPIAAD 349
Query: 387 LEEWTVVQPAQIVTAVEQLCQ 407
V+ +I+ A+E + +
Sbjct: 350 AAYAPTVE--RIIKAIEYVMR 368
>pdb|3DUF|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 325
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 105/306 (34%), Positives = 175/306 (57%), Gaps = 1/306 (0%)
Query: 86 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENS 145
++ + +A+ + L E+ DP+V + GEDVG GG ++ T+GL ++G+ RV DTP+AE+
Sbjct: 3 QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESG 62
Query: 146 FTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXX 205
G+ IG A+ G RP+ E GF+ + I + Y +GG++
Sbjct: 63 IGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGG 122
Query: 206 XQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKE 264
HS LE PG+++V STPY+AKGL+ +AIR +PVI EH+ LY + ++
Sbjct: 123 VHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLYRSFRQ 182
Query: 265 RIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPF 324
+P+ EY + +A++ R G+ +TI+ Y M + ++AA L +G EV+D+R+++P
Sbjct: 183 EVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTVQPL 242
Query: 325 DLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYA 384
D+ TI S++KT R ++V+E R GI A++ A I E L+AP++ +++ D P+A
Sbjct: 243 DIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVYPFA 302
Query: 385 GTLEEW 390
W
Sbjct: 303 QAESVW 308
>pdb|1W85|B Chain B, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|D Chain D, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|F Chain F, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|H Chain H, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W88|B Chain B, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|D Chain D, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|F Chain F, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|H Chain H, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 324
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 105/306 (34%), Positives = 175/306 (57%), Gaps = 1/306 (0%)
Query: 86 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENS 145
++ + +A+ + L E+ DP+V + GEDVG GG ++ T+GL ++G+ RV DTP+AE+
Sbjct: 2 QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESG 61
Query: 146 FTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXX 205
G+ IG A+ G RP+ E GF+ + I + Y +GG++
Sbjct: 62 IGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGG 121
Query: 206 XQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKE 264
HS LE PG+++V STPY+AKGL+ +AIR +PVI EH+ LY + ++
Sbjct: 122 VHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLYRSFRQ 181
Query: 265 RIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPF 324
+P+ EY + +A++ R G+ +TI+ Y M + ++AA L +G EV+D+R+++P
Sbjct: 182 EVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTVQPL 241
Query: 325 DLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYA 384
D+ TI S++KT R ++V+E R GI A++ A I E L+AP++ +++ D P+A
Sbjct: 242 DIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVYPFA 301
Query: 385 GTLEEW 390
W
Sbjct: 302 QAESVW 307
>pdb|2BP7|B Chain B, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|D Chain D, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|F Chain F, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|H Chain H, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
Length = 339
Score = 206 bits (525), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 120/339 (35%), Positives = 179/339 (52%), Gaps = 24/339 (7%)
Query: 87 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSF 146
+ + +ALR ++ ++RD +V V G+DVG++GG ++ T+GL KYG RV D PI+E+
Sbjct: 6 MTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGI 65
Query: 147 TGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXX 206
G +G GLRP+VE + A +QI + L Y S G+F
Sbjct: 66 VGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGGGI 125
Query: 207 QLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYN----- 261
G HSQ E+ F + G++ V S PY+AKGL+ A+I ++PVI E LYN
Sbjct: 126 YGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYNGPFDG 185
Query: 262 ------------LKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNK 309
+PD Y L++A + RPG V++LTY Y AA+
Sbjct: 186 HHDRPVTPWSKHPHSAVPDGYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAAE---ES 242
Query: 310 GYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDA 369
G D EVID+RSL P DL TI S+KKT R ++V E RT G GA L + + E+ +L+A
Sbjct: 243 GVDAEVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGFGAELVSLVQEHCFHHLEA 302
Query: 370 PIVCLSSQDVPTPYAGTLEEWTVVQ-PAQIVTAVEQLCQ 407
PI ++ D P P+A +EW P+++ A++++ +
Sbjct: 303 PIERVTGWDTPYPHA---QEWAYFPGPSRVGAALKKVME 338
>pdb|1QS0|B Chain B, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate
Dehydrogenase (Branched-Chain Alpha-Keto Acid
Dehydrogenase, E1b)
Length = 338
Score = 205 bits (522), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 121/335 (36%), Positives = 177/335 (52%), Gaps = 24/335 (7%)
Query: 91 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMG 150
+ALR + ++RD +V V G+DVG++GG ++ T+GL KYG RV D PI+E+ G
Sbjct: 9 QALRSAXDVXLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTA 68
Query: 151 IGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGA 210
+G GLRP+VE + A +QI + L Y S G+F G
Sbjct: 69 VGXGAYGLRPVVEIQFADYFYPASDQIVSEXARLRYRSAGEFIAPLTLRXPCGGGIYGGQ 128
Query: 211 EHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYN--------- 261
HSQ E+ F + G++ V S PY+AKGL+ A+I ++PVI E LYN
Sbjct: 129 THSQSPEAXFTQVCGLRTVXPSNPYDAKGLLIASIECDDPVIFLEPKRLYNGPFDGHHDR 188
Query: 262 --------LKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDP 313
+PD Y L++A + RPG V++LTY Y AA+ G D
Sbjct: 189 PVTPWSKHPHSAVPDGYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAAE---ESGVDA 245
Query: 314 EVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVC 373
EVID+RSL P DL TI S+KKT R ++V E RT G GA L + + E+ +L+API
Sbjct: 246 EVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGFGAELVSLVQEHCFHHLEAPIER 305
Query: 374 LSSQDVPTPYAGTLEEWTVVQ-PAQIVTAVEQLCQ 407
++ D P P+A +EW P+++ A++++ +
Sbjct: 306 VTGWDTPYPHA---QEWAYFPGPSRVGAALKKVXE 337
>pdb|1NI4|B Chain B, Human Pyruvate Dehydrogenase
pdb|1NI4|D Chain D, Human Pyruvate Dehydrogenase
Length = 341
Score = 205 bits (521), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 116/324 (35%), Positives = 193/324 (59%), Gaps = 5/324 (1%)
Query: 86 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENS 145
++ + +A+ +G +EE++RD V ++GE+V Y G+YKV++GL KYGD R++DTPI+E
Sbjct: 14 QVTVRDAINQGXDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEXG 73
Query: 146 FTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXX 205
F G+ +GAA GLRPI E F A +Q+ N+ +Y SGG
Sbjct: 74 FAGIAVGAAXAGLRPICEFXTFNFSXQAIDQVINSAAKTYYXSGGLQPVPIVFRGPNGAS 133
Query: 206 XQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKER 265
+ A+HSQ +++ PG+++V+ +AKGL+K+AIR NPV++ E+ L Y +
Sbjct: 134 AGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELXYGVPFE 193
Query: 266 IPDE----EYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSL 321
P E +++ + +A++ R G H+T++++SR H ++AA L +G + EVI+ R++
Sbjct: 194 FPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINXRTI 253
Query: 322 KPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITEN-FHDYLDAPIVCLSSQDVP 380
+P D TI S+ KT+ ++ VE G+GA + A I E ++LDAP V ++ DVP
Sbjct: 254 RPXDXETIEASVXKTNHLVTVEGGWPQFGVGAEICARIXEGPAFNFLDAPAVRVTGADVP 313
Query: 381 TPYAGTLEEWTVVQPAQIVTAVEQ 404
PYA LE+ ++ Q I+ A+++
Sbjct: 314 XPYAKILEDNSIPQVKDIIFAIKK 337
>pdb|1DTW|B Chain B, Human Branched-Chain Alpha-Keto Acid Dehydrogenase
pdb|1OLS|B Chain B, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1OLU|B Chain B, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1V11|B Chain B, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
pdb|1V16|B Chain B, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
pdb|1V1M|B Chain B, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
pdb|1V1R|B Chain B, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
pdb|1U5B|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1X7W|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1X7X|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1X7Y|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
pdb|1X7Z|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1X80|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
pdb|1WCI|B Chain B, Reactivity Modulation Of Human Branched-chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEU|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEV|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEW|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BFB|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BFC|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BFD|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BFE|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BFF|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 342
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/305 (34%), Positives = 163/305 (53%), Gaps = 6/305 (1%)
Query: 83 QGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIA 142
Q ++ LF+++ L+ + +DP + GEDV +GG ++ T GL DKYG RV +TP+
Sbjct: 17 QTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLC 75
Query: 143 ENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXX 202
E G GIG A+TG I E ++ AF+QI N Y SG F
Sbjct: 76 EQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSP 135
Query: 203 XXXXQLGA-EHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYN 261
GA HSQ E++F PGI++V +P+ AKGL+ + I +NP I FE +LY
Sbjct: 136 WGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYR 195
Query: 262 -LKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNK--GYDPEVIDI 318
E +P E Y L +AE+++ G VT++ + + HV++ ++ + G EVID+
Sbjct: 196 AAAEEVPIEPYNIPLSQAEVIQEGSDVTLVAWG-TQVHVIREVASMAKEKLGVSCEVIDL 254
Query: 319 RSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQD 378
R++ P+D+ TI S+ KT R+LI E TGG + +++ + E L+API + D
Sbjct: 255 RTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYD 314
Query: 379 VPTPY 383
P P+
Sbjct: 315 TPFPH 319
>pdb|2J9F|B Chain B, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
pdb|2J9F|D Chain D, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
Length = 350
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/305 (34%), Positives = 163/305 (53%), Gaps = 6/305 (1%)
Query: 83 QGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIA 142
Q ++ LF+++ L+ + +DP + GEDV +GG ++ T GL DKYG RV +TP+
Sbjct: 17 QTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLC 75
Query: 143 ENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXX 202
E G GIG A+TG I E ++ AF+QI N Y SG F
Sbjct: 76 EQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSP 135
Query: 203 XXXXQLGA-EHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYN 261
GA HSQ E++F PGI++V +P+ AKGL+ + I +NP I FE +LY
Sbjct: 136 WGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYR 195
Query: 262 -LKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNK--GYDPEVIDI 318
E +P E Y L +AE+++ G VT++ + + HV++ ++ + G EVID+
Sbjct: 196 AAAEEVPIEPYNIPLSQAEVIQEGSDVTLVAWG-TQVHVIREVASMAKEKLGVSCEVIDL 254
Query: 319 RSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQD 378
R++ P+D+ TI S+ KT R+LI E TGG + +++ + E L+API + D
Sbjct: 255 RTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYD 314
Query: 379 VPTPY 383
P P+
Sbjct: 315 TPFPH 319
>pdb|1OLX|B Chain B, Roles Of His291-alpha And His146-beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-chain
Alpha-ketoacid Dehydrogenase
Length = 342
Score = 181 bits (458), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 105/305 (34%), Positives = 163/305 (53%), Gaps = 6/305 (1%)
Query: 83 QGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIA 142
Q ++ LF+++ L+ + +DP + GEDV +GG ++ T GL DKYG RV +TP+
Sbjct: 17 QTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLC 75
Query: 143 ENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXX 202
E G GIG A+TG I E ++ AF+QI N Y SG F
Sbjct: 76 EQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSP 135
Query: 203 XXXXQLGAEH-SQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYN 261
GA + SQ E++F PGI++V +P+ AKGL+ + I +NP I FE +LY
Sbjct: 136 WGCVGHGALYASQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYR 195
Query: 262 -LKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNK--GYDPEVIDI 318
E +P E Y L +AE+++ G VT++ + + HV++ ++ + G EVID+
Sbjct: 196 AAAEEVPIEPYNIPLSQAEVIQEGSDVTLVAWG-TQVHVIREVASMAKEKLGVSCEVIDL 254
Query: 319 RSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQD 378
R++ P+D+ TI S+ KT R+LI E TGG + +++ + E L+API + D
Sbjct: 255 RTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYD 314
Query: 379 VPTPY 383
P P+
Sbjct: 315 TPFPH 319
>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|B Chain B, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|C Chain C, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|D Chain D, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
Length = 629
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 98/233 (42%), Gaps = 18/233 (7%)
Query: 135 RVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTX 194
R LD IAE G A+ G+RP+V + FL A++Q+ ++ + H F
Sbjct: 365 RYLDVGIAEEVAVTTAAGMALQGMRPVV-AIYSTFLQRAYDQVLHDVAIEHLNV--TFCI 421
Query: 195 XXXXXXXXXXXXQLGAEHSQRLE-SYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVIL 253
GA H+ + S+ +SIPG+++ +G++K A + P
Sbjct: 422 DRAGIVGAD-----GATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQTHDGP--- 473
Query: 254 FEHVLLYNLKERIPDEEYI-CNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYD 312
F ++P + E E ++ G+ V IL + + ++AA+ L G
Sbjct: 474 FAIRYPRGNTAQVPAGTWPDLKWGEWERLKGGDDVVILAGGKALDYALKAAEDLPGVG-- 531
Query: 313 PEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITE-NFH 364
V++ R +KP D + + ++ VE+ GG G ++ A+ N H
Sbjct: 532 --VVNARFVKPLDEEMLREVGGRARALITVEDNTVVGGFGGAVLEALNSMNLH 582
>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt)
pdb|3OOY|B Chain B, Crystal Structure Of Human Transketolase (Tkt)
Length = 616
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 62/125 (49%), Gaps = 12/125 (9%)
Query: 236 NAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRM 295
N KG+ IR+ P E+ ++YN +E++ + + + VT++
Sbjct: 459 NTKGI--CFIRTSRP----ENAIIYN-----NNEDFQVGQAKVVLKSKDDQVTVIGAGVT 507
Query: 296 RYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTH-RVLIVEECMRTGGIGAS 354
+ + AA+ L + + V+D ++KP D I +S + T R+L VE+ GGIG +
Sbjct: 508 LHEALAAAELLKKEKINIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEA 567
Query: 355 LTAAI 359
+++A+
Sbjct: 568 VSSAV 572
>pdb|3MOS|A Chain A, The Structure Of Human Transketolase
Length = 616
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 62/125 (49%), Gaps = 12/125 (9%)
Query: 236 NAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRM 295
N KG+ IR+ P E+ ++YN +E++ + + + VT++
Sbjct: 461 NTKGI--CFIRTSRP----ENAIIYN-----NNEDFQVGQAKVVLKSKDDQVTVIGAGVT 509
Query: 296 RYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTH-RVLIVEECMRTGGIGAS 354
+ + AA+ L + + V+D ++KP D I +S + T R+L VE+ GGIG +
Sbjct: 510 LHEALAAAELLKKEKINIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEA 569
Query: 355 LTAAI 359
+++A+
Sbjct: 570 VSSAV 574
>pdb|2O1S|A Chain A, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|B Chain B, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|C Chain C, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|D Chain D, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
Length = 621
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 282 RPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLI 341
R GE + IL + + + A++L + ++D R +KP D I ++
Sbjct: 501 RRGEKLAILNFGTLXPEAAKVAESL-----NATLVDXRFVKPLDEALILEXAASHEALVT 555
Query: 342 VEECMRTGGIGASLT 356
VEE GG G+ +
Sbjct: 556 VEENAIXGGAGSGVN 570
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,082,382
Number of Sequences: 62578
Number of extensions: 431147
Number of successful extensions: 1060
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1008
Number of HSP's gapped (non-prelim): 19
length of query: 407
length of database: 14,973,337
effective HSP length: 101
effective length of query: 306
effective length of database: 8,652,959
effective search space: 2647805454
effective search space used: 2647805454
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)