Query 015415
Match_columns 407
No_of_seqs 186 out of 1481
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 06:05:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015415.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015415hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0022 AcoB Pyruvate/2-oxoglu 100.0 7.6E-78 1.7E-82 572.8 31.1 322 86-407 1-323 (324)
2 CHL00144 odpB pyruvate dehydro 100.0 3.3E-75 7.2E-80 578.0 36.3 321 86-407 3-324 (327)
3 PLN02683 pyruvate dehydrogenas 100.0 7.5E-73 1.6E-77 566.5 38.2 325 82-406 22-350 (356)
4 KOG0524 Pyruvate dehydrogenase 100.0 7.9E-74 1.7E-78 533.2 25.9 346 58-407 10-359 (359)
5 PRK09212 pyruvate dehydrogenas 100.0 3.1E-72 6.6E-77 557.3 37.3 322 85-406 2-323 (327)
6 PTZ00182 3-methyl-2-oxobutanat 100.0 1.3E-71 2.7E-76 557.5 37.2 324 83-406 31-355 (355)
7 PRK11892 pyruvate dehydrogenas 100.0 2.8E-71 6E-76 570.3 37.5 324 84-407 139-463 (464)
8 COG3958 Transketolase, C-termi 100.0 1.3E-70 2.7E-75 520.0 32.1 302 85-406 5-312 (312)
9 PLN02225 1-deoxy-D-xylulose-5- 100.0 1.7E-63 3.6E-68 527.9 36.9 306 86-406 380-690 (701)
10 TIGR00204 dxs 1-deoxy-D-xylulo 100.0 2.6E-61 5.6E-66 514.3 36.9 303 86-406 309-616 (617)
11 COG1154 Dxs Deoxyxylulose-5-ph 100.0 4.6E-61 1E-65 492.0 33.8 305 84-406 313-622 (627)
12 PLN02582 1-deoxy-D-xylulose-5- 100.0 5.6E-60 1.2E-64 504.1 36.1 305 86-406 355-666 (677)
13 PRK12571 1-deoxy-D-xylulose-5- 100.0 2.8E-59 6.1E-64 500.2 36.2 305 86-406 318-627 (641)
14 PRK12315 1-deoxy-D-xylulose-5- 100.0 2E-58 4.4E-63 489.4 34.8 299 86-407 277-581 (581)
15 PRK05444 1-deoxy-D-xylulose-5- 100.0 2.1E-57 4.5E-62 482.8 34.7 297 87-406 279-580 (580)
16 PLN02234 1-deoxy-D-xylulose-5- 100.0 3.1E-55 6.7E-60 464.1 32.3 272 86-373 356-632 (641)
17 KOG0525 Branched chain alpha-k 100.0 1.2E-53 2.5E-58 393.1 18.1 321 84-407 38-361 (362)
18 PRK05899 transketolase; Review 100.0 7.7E-49 1.7E-53 420.5 32.0 292 85-406 317-624 (624)
19 PRK12753 transketolase; Review 100.0 2E-48 4.4E-53 417.7 32.6 294 83-406 351-663 (663)
20 TIGR00232 tktlase_bact transke 100.0 2.1E-48 4.6E-53 417.5 32.0 294 83-406 345-653 (653)
21 PLN02790 transketolase 100.0 2.4E-47 5.1E-52 409.5 32.5 293 84-406 341-654 (654)
22 PTZ00089 transketolase; Provis 100.0 1.8E-47 3.9E-52 410.8 29.7 291 83-406 351-658 (661)
23 KOG0523 Transketolase [Carbohy 100.0 2.7E-47 5.9E-52 388.6 23.9 302 80-406 312-625 (632)
24 PRK12754 transketolase; Review 100.0 4.1E-46 8.9E-51 398.2 30.2 292 85-406 353-663 (663)
25 PRK09405 aceE pyruvate dehydro 100.0 6.2E-44 1.3E-48 386.1 31.1 304 84-406 492-861 (891)
26 TIGR03186 AKGDH_not_PDH alpha- 100.0 5E-44 1.1E-48 386.7 29.1 304 84-406 487-858 (889)
27 PRK13012 2-oxoacid dehydrogena 100.0 8.1E-41 1.7E-45 363.2 30.1 296 83-406 499-866 (896)
28 cd07036 TPP_PYR_E1-PDHc-beta_l 100.0 6.4E-41 1.4E-45 302.7 18.0 166 91-257 1-167 (167)
29 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 2.4E-36 5.2E-41 328.8 29.5 289 85-383 584-910 (929)
30 PRK09404 sucA 2-oxoglutarate d 100.0 9.3E-36 2E-40 325.5 28.3 288 85-383 582-904 (924)
31 COG0021 TktA Transketolase [Ca 100.0 3.3E-35 7.2E-40 303.4 27.4 295 84-407 351-663 (663)
32 cd07033 TPP_PYR_DXS_TK_like Py 100.0 1.4E-35 3.1E-40 265.3 18.3 153 91-257 1-156 (156)
33 PF02779 Transket_pyr: Transke 100.0 1E-33 2.2E-38 258.4 14.6 167 85-261 1-176 (178)
34 smart00861 Transket_pyr Transk 100.0 2.6E-29 5.6E-34 227.0 17.6 155 88-257 1-166 (168)
35 PF02780 Transketolase_C: Tran 99.9 1.6E-25 3.4E-30 192.6 3.2 123 276-398 1-124 (124)
36 PRK07119 2-ketoisovalerate fer 99.9 8.1E-22 1.8E-26 198.0 26.0 248 126-406 42-349 (352)
37 TIGR03336 IOR_alpha indolepyru 99.9 5.1E-22 1.1E-26 212.4 25.2 246 134-405 46-335 (595)
38 PRK08659 2-oxoglutarate ferred 99.9 2.1E-21 4.6E-26 196.5 25.5 242 133-405 48-375 (376)
39 PRK09627 oorA 2-oxoglutarate-a 99.9 1.2E-20 2.6E-25 190.6 24.6 243 130-405 45-375 (375)
40 PRK09622 porA pyruvate flavodo 99.9 5.4E-20 1.2E-24 188.1 27.4 214 135-361 58-344 (407)
41 PRK08366 vorA 2-ketoisovalerat 99.8 6.5E-19 1.4E-23 178.8 25.0 212 135-359 51-337 (390)
42 PRK05261 putative phosphoketol 99.8 9.8E-18 2.1E-22 180.8 28.9 295 85-404 389-739 (785)
43 PRK08367 porA pyruvate ferredo 99.8 2.6E-17 5.6E-22 167.5 29.1 216 134-361 51-341 (394)
44 TIGR03710 OAFO_sf 2-oxoacid:ac 99.8 3.4E-18 7.5E-23 181.5 22.1 214 135-359 238-537 (562)
45 TIGR00759 aceE pyruvate dehydr 99.7 1.7E-14 3.8E-19 156.1 24.7 294 85-406 487-855 (885)
46 COG4231 Indolepyruvate ferredo 99.6 2.2E-13 4.7E-18 142.0 24.4 244 134-406 58-353 (640)
47 COG0674 PorA Pyruvate:ferredox 99.6 7E-13 1.5E-17 134.0 24.5 209 133-353 47-326 (365)
48 TIGR02176 pyruv_ox_red pyruvat 99.5 8.8E-12 1.9E-16 141.9 30.1 213 135-361 53-346 (1165)
49 COG2609 AceE Pyruvate dehydrog 99.3 1.3E-10 2.8E-15 121.8 21.8 296 83-406 488-857 (887)
50 PRK13030 2-oxoacid ferredoxin 99.3 6.3E-11 1.4E-15 133.5 20.0 245 135-405 75-393 (1159)
51 cd06586 TPP_enzyme_PYR Pyrimid 99.3 7.8E-11 1.7E-15 103.9 12.6 115 130-256 32-153 (154)
52 PRK09193 indolepyruvate ferred 99.2 3.7E-10 8.1E-15 127.0 20.0 243 134-405 82-401 (1165)
53 PRK13029 2-oxoacid ferredoxin 99.2 5.7E-10 1.2E-14 125.4 19.4 248 134-405 85-415 (1186)
54 PRK12270 kgd alpha-ketoglutara 99.1 7.7E-09 1.7E-13 112.6 21.0 287 84-383 884-1207(1228)
55 COG3957 Phosphoketolase [Carbo 98.7 2.8E-07 6E-12 97.6 14.8 228 90-323 404-668 (793)
56 PF01855 POR_N: Pyruvate flavo 98.7 9.7E-08 2.1E-12 90.8 10.2 112 136-258 38-155 (230)
57 KOG0450 2-oxoglutarate dehydro 98.7 6.3E-07 1.4E-11 94.4 16.9 284 84-378 646-987 (1017)
58 KOG0451 Predicted 2-oxoglutara 98.7 3.3E-07 7.2E-12 94.3 13.5 285 84-383 561-893 (913)
59 COG0567 SucA 2-oxoglutarate de 98.5 1E-06 2.3E-11 96.0 12.6 284 84-382 563-884 (906)
60 cd07034 TPP_PYR_PFOR_IOR-alpha 97.8 0.0017 3.6E-08 57.8 16.3 109 133-255 41-158 (160)
61 PF03894 XFP: D-xylulose 5-pho 97.5 0.0076 1.6E-07 54.7 16.0 154 91-246 2-178 (179)
62 cd07035 TPP_PYR_POX_like Pyrim 97.3 0.0036 7.8E-08 55.3 11.5 135 104-256 11-154 (155)
63 TIGR03297 Ppyr-DeCO2ase phosph 97.0 0.0087 1.9E-07 60.8 12.2 125 125-260 18-155 (361)
64 PF02776 TPP_enzyme_N: Thiamin 96.8 0.042 9.1E-07 49.6 13.8 152 89-259 3-163 (172)
65 cd07039 TPP_PYR_POX Pyrimidine 96.6 0.078 1.7E-06 47.7 14.3 123 122-257 28-158 (164)
66 PRK07586 hypothetical protein; 96.2 0.48 1E-05 50.2 19.4 197 134-344 40-271 (514)
67 TIGR03845 sulfopyru_alph sulfo 96.1 0.046 9.9E-07 49.0 9.7 113 134-258 35-155 (157)
68 PRK05858 hypothetical protein; 96.1 0.43 9.4E-06 51.0 18.8 152 87-259 5-165 (542)
69 PRK08199 thiamine pyrophosphat 95.9 0.67 1.4E-05 49.7 19.0 114 134-260 47-170 (557)
70 cd02001 TPP_ComE_PpyrDC Thiami 95.8 0.2 4.3E-06 44.7 12.3 144 91-254 2-151 (157)
71 TIGR00118 acolac_lg acetolacta 95.6 0.22 4.7E-06 53.4 14.1 123 123-258 30-161 (558)
72 PRK07064 hypothetical protein; 95.5 1.5 3.2E-05 46.8 20.1 111 135-258 43-166 (544)
73 PRK06965 acetolactate synthase 95.5 0.36 7.9E-06 52.1 15.4 158 81-258 15-181 (587)
74 PRK07789 acetolactate synthase 95.5 0.35 7.5E-06 52.6 15.2 153 86-258 30-191 (612)
75 PRK12474 hypothetical protein; 95.5 1.6 3.4E-05 46.4 19.8 155 86-259 4-166 (518)
76 cd07037 TPP_PYR_MenD Pyrimidin 95.4 0.15 3.2E-06 46.0 10.2 120 123-255 26-160 (162)
77 PRK09107 acetolactate synthase 95.4 0.25 5.4E-06 53.5 13.8 148 94-259 14-172 (595)
78 PRK06725 acetolactate synthase 95.3 0.34 7.3E-06 52.3 14.2 124 123-259 44-175 (570)
79 PRK08322 acetolactate synthase 95.2 0.34 7.4E-06 51.7 13.9 124 123-259 30-161 (547)
80 PRK07979 acetolactate synthase 95.1 0.37 8E-06 51.9 13.9 115 134-259 43-165 (574)
81 PRK07710 acetolactate synthase 95.1 0.63 1.4E-05 50.1 15.4 121 123-258 45-175 (571)
82 PRK06466 acetolactate synthase 95.0 0.4 8.7E-06 51.6 13.9 123 123-258 33-164 (574)
83 cd02009 TPP_SHCHC_synthase Thi 95.0 0.34 7.4E-06 43.9 11.2 114 131-254 39-171 (175)
84 PRK07282 acetolactate synthase 94.9 0.48 1E-05 51.0 13.9 123 123-258 39-170 (566)
85 cd02010 TPP_ALS Thiamine pyrop 94.8 0.35 7.7E-06 43.9 10.9 111 133-254 38-166 (177)
86 PRK08527 acetolactate synthase 94.8 0.54 1.2E-05 50.5 14.0 112 134-258 42-163 (563)
87 PRK07525 sulfoacetaldehyde ace 94.7 0.65 1.4E-05 50.2 14.5 151 88-259 7-165 (588)
88 cd07038 TPP_PYR_PDC_IPDC_like 94.6 1.1 2.5E-05 40.0 13.6 111 134-256 36-161 (162)
89 PRK06456 acetolactate synthase 94.6 0.65 1.4E-05 49.9 14.2 110 135-258 45-165 (572)
90 PLN02470 acetolactate synthase 94.6 0.57 1.2E-05 50.6 13.7 113 134-258 52-173 (585)
91 cd02014 TPP_POX Thiamine pyrop 94.6 0.8 1.7E-05 41.5 12.7 114 129-254 38-169 (178)
92 cd02004 TPP_BZL_OCoD_HPCL Thia 94.5 0.4 8.8E-06 43.0 10.6 112 133-254 38-168 (172)
93 PRK08155 acetolactate synthase 94.5 1.1 2.5E-05 48.0 15.7 152 87-258 13-173 (564)
94 cd03376 TPP_PFOR_porB_like Thi 94.4 1.4 3E-05 42.1 14.3 88 158-254 80-196 (235)
95 cd02018 TPP_PFOR Thiamine pyro 94.2 1.5 3.3E-05 41.8 14.3 113 133-254 52-199 (237)
96 PRK06048 acetolactate synthase 94.1 1 2.2E-05 48.4 14.3 122 123-258 37-167 (561)
97 TIGR02177 PorB_KorB 2-oxoacid: 94.0 1.4 3E-05 43.5 13.8 143 89-254 12-182 (287)
98 PRK07092 benzoylformate decarb 93.9 1.7 3.8E-05 46.2 15.5 113 134-258 49-171 (530)
99 PRK08979 acetolactate synthase 93.9 1.1 2.4E-05 48.3 14.1 122 123-258 33-164 (572)
100 cd02015 TPP_AHAS Thiamine pyro 93.8 0.73 1.6E-05 42.0 10.8 111 133-254 40-170 (186)
101 PRK07524 hypothetical protein; 93.8 1.1 2.3E-05 47.9 13.6 113 134-259 40-165 (535)
102 TIGR02418 acolac_catab acetola 93.8 1.1 2.3E-05 47.9 13.5 113 134-258 37-158 (539)
103 TIGR03846 sulfopy_beta sulfopy 93.8 1.8 4E-05 39.5 13.3 144 90-254 1-152 (181)
104 PRK06882 acetolactate synthase 93.7 1.3 2.9E-05 47.6 14.2 113 134-258 43-164 (574)
105 PRK11866 2-oxoacid ferredoxin 93.7 1.1 2.5E-05 43.9 12.5 146 89-254 18-188 (279)
106 PRK08611 pyruvate oxidase; Pro 93.7 1.5 3.3E-05 47.2 14.7 155 87-259 4-165 (576)
107 PRK06163 hypothetical protein; 93.7 2.6 5.6E-05 39.3 14.4 146 90-254 15-169 (202)
108 PRK08266 hypothetical protein; 93.6 1.3 2.9E-05 47.1 14.0 152 87-258 4-168 (542)
109 TIGR02720 pyruv_oxi_spxB pyruv 93.4 1.7 3.6E-05 46.9 14.4 125 123-259 28-160 (575)
110 TIGR03457 sulphoacet_xsc sulfo 93.2 1.9 4.1E-05 46.5 14.4 114 134-259 40-161 (579)
111 cd03375 TPP_OGFOR Thiamine pyr 93.2 2.9 6.2E-05 38.6 13.7 26 229-254 155-180 (193)
112 cd02013 TPP_Xsc_like Thiamine 93.1 1 2.2E-05 41.5 10.7 111 133-254 43-175 (196)
113 PLN02573 pyruvate decarboxylas 93.1 1.6 3.6E-05 47.1 13.7 153 87-259 16-183 (578)
114 PRK09124 pyruvate dehydrogenas 93.1 1.4 3E-05 47.5 13.1 123 123-258 32-162 (574)
115 PF02775 TPP_enzyme_C: Thiamin 92.9 1.1 2.3E-05 39.4 10.1 110 133-253 18-151 (153)
116 TIGR01504 glyox_carbo_lig glyo 92.9 2.1 4.6E-05 46.3 14.3 114 134-259 42-165 (588)
117 PRK06546 pyruvate dehydrogenas 92.8 2 4.3E-05 46.4 13.8 122 123-258 32-162 (578)
118 PRK08617 acetolactate synthase 92.8 2.1 4.5E-05 45.8 13.9 149 87-258 5-164 (552)
119 cd00568 TPP_enzymes Thiamine p 92.7 0.66 1.4E-05 40.9 8.5 112 133-254 36-165 (168)
120 PRK11269 glyoxylate carboligas 92.6 2.4 5.1E-05 45.9 14.2 122 123-258 33-165 (591)
121 PRK08273 thiamine pyrophosphat 92.6 1.9 4.2E-05 46.7 13.5 149 94-259 6-165 (597)
122 PRK08978 acetolactate synthase 92.6 2.2 4.7E-05 45.7 13.7 113 134-258 39-160 (548)
123 PRK08327 acetolactate synthase 92.6 2.4 5.3E-05 45.6 14.1 113 135-258 52-181 (569)
124 PRK11865 pyruvate ferredoxin o 92.5 4.4 9.5E-05 40.2 14.6 34 221-254 174-207 (299)
125 PRK09628 oorB 2-oxoglutarate-a 92.4 1.6 3.6E-05 42.7 11.5 142 91-254 29-197 (277)
126 PRK06112 acetolactate synthase 92.3 7 0.00015 42.1 17.2 114 134-259 50-172 (578)
127 PRK07418 acetolactate synthase 92.2 1.5 3.3E-05 47.6 12.1 113 134-258 61-182 (616)
128 cd02003 TPP_IolD Thiamine pyro 92.1 2.2 4.8E-05 39.6 11.6 36 218-254 145-180 (205)
129 PRK06457 pyruvate dehydrogenas 92.1 3 6.5E-05 44.7 14.1 122 123-259 31-161 (549)
130 PRK06276 acetolactate synthase 91.9 1.6 3.5E-05 47.1 11.8 122 123-258 30-160 (586)
131 COG0028 IlvB Thiamine pyrophos 91.9 3 6.4E-05 44.9 13.7 124 123-259 31-162 (550)
132 CHL00099 ilvB acetohydroxyacid 91.8 1.8 3.9E-05 46.8 12.0 112 135-258 53-173 (585)
133 PRK08155 acetolactate synthase 91.4 1.5 3.3E-05 47.0 11.0 111 133-254 409-539 (564)
134 TIGR03254 oxalate_oxc oxalyl-C 91.4 2.1 4.5E-05 45.9 11.9 114 134-259 41-165 (554)
135 PRK09259 putative oxalyl-CoA d 91.3 1.9 4E-05 46.5 11.5 114 134-259 48-172 (569)
136 cd02002 TPP_BFDC Thiamine pyro 91.3 5.7 0.00012 35.6 13.1 111 133-254 40-175 (178)
137 cd03371 TPP_PpyrDC Thiamine py 91.3 5.4 0.00012 36.6 13.0 111 133-254 41-159 (188)
138 PRK11867 2-oxoglutarate ferred 91.2 4 8.7E-05 40.2 12.7 143 89-254 28-198 (286)
139 TIGR03297 Ppyr-DeCO2ase phosph 90.7 9.4 0.0002 38.9 15.2 110 133-254 214-332 (361)
140 cd03372 TPP_ComE Thiamine pyro 90.6 6.7 0.00015 35.6 12.9 143 90-254 1-151 (179)
141 TIGR03394 indol_phenyl_DC indo 90.4 4.9 0.00011 43.0 13.5 148 94-259 3-166 (535)
142 cd02008 TPP_IOR_alpha Thiamine 89.9 2.6 5.6E-05 38.2 9.5 99 147-254 57-173 (178)
143 cd02006 TPP_Gcl Thiamine pyrop 89.8 2.5 5.3E-05 39.1 9.5 111 133-254 47-190 (202)
144 PRK06457 pyruvate dehydrogenas 89.7 4.4 9.6E-05 43.4 12.6 111 133-254 386-515 (549)
145 COG4032 Predicted thiamine-pyr 89.6 0.85 1.8E-05 40.1 5.6 110 136-257 43-163 (172)
146 PRK08617 acetolactate synthase 89.5 3.5 7.6E-05 44.1 11.6 111 131-254 402-532 (552)
147 TIGR03393 indolpyr_decarb indo 89.4 5 0.00011 42.9 12.7 114 134-259 40-167 (539)
148 cd02007 TPP_DXS Thiamine pyrop 89.3 2 4.4E-05 39.7 8.4 105 136-254 71-186 (195)
149 COG1071 AcoA Pyruvate/2-oxoglu 88.9 2 4.4E-05 43.6 8.6 101 144-254 143-257 (358)
150 TIGR03254 oxalate_oxc oxalyl-C 88.6 6.7 0.00015 42.0 13.0 147 93-254 371-534 (554)
151 PRK11864 2-ketoisovalerate fer 88.4 5 0.00011 39.8 10.9 34 221-254 170-203 (300)
152 PRK06048 acetolactate synthase 88.1 5 0.00011 43.1 11.7 111 133-254 404-534 (561)
153 PRK07449 2-succinyl-5-enolpyru 88.0 4.4 9.6E-05 43.5 11.2 148 93-258 11-174 (568)
154 TIGR00118 acolac_lg acetolacta 87.9 5.1 0.00011 43.0 11.5 146 92-254 367-532 (558)
155 PRK06276 acetolactate synthase 87.7 3.1 6.8E-05 44.9 9.8 111 133-254 409-539 (586)
156 cd02012 TPP_TK Thiamine pyroph 87.6 6.2 0.00013 37.9 10.9 99 145-254 109-223 (255)
157 PRK08322 acetolactate synthase 87.4 6.8 0.00015 41.8 12.1 111 133-254 396-524 (547)
158 TIGR00173 menD 2-succinyl-5-en 86.9 4.9 0.00011 41.7 10.4 111 135-258 40-166 (432)
159 PRK08527 acetolactate synthase 86.3 7.2 0.00016 41.9 11.7 111 133-254 404-534 (563)
160 PRK08978 acetolactate synthase 86.2 9.6 0.00021 40.7 12.5 111 133-254 391-521 (548)
161 cd02005 TPP_PDC_IPDC Thiamine 86.2 14 0.0003 33.6 11.9 145 93-254 7-170 (183)
162 PRK08266 hypothetical protein; 86.0 6.2 0.00013 42.1 10.9 111 133-254 392-521 (542)
163 PRK06546 pyruvate dehydrogenas 85.8 5.8 0.00013 42.8 10.6 109 133-254 398-526 (578)
164 PRK06965 acetolactate synthase 85.6 8.9 0.00019 41.5 11.9 111 133-254 427-558 (587)
165 PRK11869 2-oxoacid ferredoxin 85.2 3.8 8.2E-05 40.3 8.0 146 88-254 18-189 (280)
166 TIGR03336 IOR_alpha indolepyru 84.5 10 0.00022 41.2 11.7 114 133-255 395-527 (595)
167 PF09363 XFP_C: XFP C-terminal 84.3 4.2 9.2E-05 37.9 7.4 88 284-379 34-134 (203)
168 PRK05778 2-oxoglutarate ferred 84.2 4.7 0.0001 40.0 8.3 142 89-254 29-199 (301)
169 PRK06154 hypothetical protein; 84.1 19 0.00041 38.8 13.5 112 133-254 421-551 (565)
170 PRK09107 acetolactate synthase 84.1 9.7 0.00021 41.3 11.4 111 133-254 420-550 (595)
171 PRK09124 pyruvate dehydrogenas 83.7 18 0.0004 38.9 13.3 111 133-254 398-526 (574)
172 TIGR02418 acolac_catab acetola 83.7 13 0.00028 39.6 12.1 112 132-254 397-526 (539)
173 PRK05858 hypothetical protein; 83.5 11 0.00024 40.2 11.5 111 133-254 397-526 (542)
174 KOG0225 Pyruvate dehydrogenase 82.7 8 0.00017 38.8 9.0 108 143-261 169-290 (394)
175 PRK06882 acetolactate synthase 82.4 16 0.00035 39.3 12.2 145 93-254 377-542 (574)
176 PRK07789 acetolactate synthase 82.3 8.3 0.00018 41.9 10.0 111 133-254 437-572 (612)
177 PRK06466 acetolactate synthase 82.1 21 0.00046 38.4 13.0 111 133-254 413-544 (574)
178 PRK08199 thiamine pyrophosphat 82.0 12 0.00025 40.2 10.9 111 133-254 406-534 (557)
179 PRK07710 acetolactate synthase 81.9 16 0.00035 39.3 12.0 111 133-254 414-544 (571)
180 PRK07092 benzoylformate decarb 81.1 21 0.00046 38.0 12.5 111 133-254 398-526 (530)
181 PRK09259 putative oxalyl-CoA d 81.1 14 0.0003 39.8 11.1 146 93-254 378-542 (569)
182 PRK05899 transketolase; Review 81.0 8.3 0.00018 42.1 9.5 101 145-255 122-245 (624)
183 PRK06154 hypothetical protein; 80.6 21 0.00046 38.4 12.3 149 85-259 18-177 (565)
184 PRK07524 hypothetical protein; 80.4 13 0.00029 39.5 10.6 111 133-254 396-525 (535)
185 PRK06112 acetolactate synthase 80.2 14 0.0003 39.8 10.8 109 135-254 429-556 (578)
186 PLN02980 2-oxoglutarate decarb 79.9 18 0.00038 44.3 12.5 149 91-256 301-465 (1655)
187 PRK07449 2-succinyl-5-enolpyru 79.9 7.2 0.00016 41.9 8.5 99 145-254 429-545 (568)
188 TIGR01504 glyox_carbo_lig glyo 79.7 10 0.00022 41.1 9.5 111 133-254 408-551 (588)
189 PLN02470 acetolactate synthase 79.6 19 0.00041 38.9 11.6 111 133-254 416-553 (585)
190 PRK05444 1-deoxy-D-xylulose-5- 79.2 12 0.00025 40.6 9.8 107 137-255 114-239 (580)
191 PRK07418 acetolactate synthase 79.2 23 0.0005 38.6 12.1 111 133-254 424-555 (616)
192 PRK12474 hypothetical protein; 78.5 19 0.00042 38.2 11.1 146 92-254 345-515 (518)
193 TIGR02720 pyruv_oxi_spxB pyruv 77.8 35 0.00076 36.8 13.0 109 133-254 398-528 (575)
194 COG3961 Pyruvate decarboxylase 77.4 15 0.00033 39.0 9.5 137 105-258 20-170 (557)
195 PRK07586 hypothetical protein; 76.3 45 0.00097 35.3 13.1 111 133-253 376-510 (514)
196 PRK08273 thiamine pyrophosphat 76.2 44 0.00096 36.2 13.3 37 217-254 506-542 (597)
197 PRK08979 acetolactate synthase 75.8 30 0.00065 37.3 11.8 111 133-254 411-542 (572)
198 PRK12315 1-deoxy-D-xylulose-5- 75.5 22 0.00047 38.7 10.5 110 135-254 108-239 (581)
199 TIGR03457 sulphoacet_xsc sulfo 75.4 41 0.00089 36.3 12.7 109 133-254 420-553 (579)
200 PRK11269 glyoxylate carboligas 75.1 28 0.0006 37.7 11.3 111 133-254 409-552 (591)
201 COG0075 Serine-pyruvate aminot 74.5 11 0.00023 38.8 7.4 81 279-362 75-160 (383)
202 cd03028 GRX_PICOT_like Glutare 74.3 8.8 0.00019 30.6 5.5 66 284-355 7-81 (90)
203 PLN02790 transketolase 73.9 17 0.00036 40.1 9.3 74 172-255 153-235 (654)
204 PRK07979 acetolactate synthase 73.7 49 0.0011 35.6 12.7 111 133-254 411-544 (574)
205 PTZ00089 transketolase; Provis 72.5 26 0.00055 38.7 10.3 74 172-256 164-247 (661)
206 COG0028 IlvB Thiamine pyrophos 72.5 17 0.00037 39.2 8.8 146 92-254 363-527 (550)
207 PRK08611 pyruvate oxidase; Pro 72.3 40 0.00086 36.4 11.7 112 132-254 397-526 (576)
208 PRK06725 acetolactate synthase 72.0 19 0.00042 38.8 9.1 111 133-254 412-541 (570)
209 cd03033 ArsC_15kD Arsenate Red 71.9 8.4 0.00018 32.5 5.1 49 287-337 2-50 (113)
210 PF03358 FMN_red: NADPH-depend 70.1 12 0.00025 32.4 5.8 66 293-359 14-93 (152)
211 PRK07064 hypothetical protein; 70.0 24 0.00052 37.6 9.3 111 133-254 396-524 (544)
212 cd01481 vWA_collagen_alpha3-VI 69.9 9.6 0.00021 34.1 5.3 55 287-344 110-164 (165)
213 cd00860 ThrRS_anticodon ThrRS 69.5 19 0.00041 27.9 6.4 58 286-346 3-62 (91)
214 cd03027 GRX_DEP Glutaredoxin ( 68.2 14 0.00031 27.8 5.3 65 286-353 2-67 (73)
215 PF10740 DUF2529: Protein of u 68.1 15 0.00033 33.4 6.1 83 234-317 24-115 (172)
216 PRK07525 sulfoacetaldehyde ace 67.6 51 0.0011 35.6 11.3 111 133-254 425-558 (588)
217 PRK06456 acetolactate synthase 66.8 42 0.00092 36.0 10.4 111 133-254 411-541 (572)
218 TIGR00365 monothiol glutaredox 66.4 16 0.00034 29.8 5.4 66 284-355 11-85 (97)
219 CHL00099 ilvB acetohydroxyacid 66.4 50 0.0011 35.7 10.9 111 133-254 420-551 (585)
220 COG4231 Indolepyruvate ferredo 66.2 21 0.00046 38.7 7.7 144 88-256 390-552 (640)
221 PF03960 ArsC: ArsC family; I 65.2 9 0.00019 31.8 3.9 42 295-337 5-46 (110)
222 TIGR03393 indolpyr_decarb indo 64.7 50 0.0011 35.3 10.4 144 93-254 361-523 (539)
223 TIGR01616 nitro_assoc nitrogen 63.3 17 0.00037 31.3 5.3 44 292-336 6-50 (126)
224 KOG1184 Thiamine pyrophosphate 62.5 28 0.0006 37.0 7.5 134 105-257 20-169 (561)
225 PF00676 E1_dh: Dehydrogenase 61.6 14 0.00031 36.5 5.2 98 147-254 107-221 (300)
226 TIGR03181 PDH_E1_alph_x pyruva 60.7 30 0.00065 34.9 7.4 60 193-254 172-242 (341)
227 COG1393 ArsC Arsenate reductas 60.6 24 0.00052 30.0 5.7 49 287-337 3-51 (117)
228 KOG1185 Thiamine pyrophosphate 59.9 56 0.0012 34.7 9.1 112 129-253 416-555 (571)
229 COG0680 HyaD Ni,Fe-hydrogenase 59.8 23 0.0005 31.8 5.7 57 285-345 2-65 (160)
230 cd06062 H2MP_MemB-H2up Endopep 58.8 28 0.0006 30.5 6.0 55 287-345 1-62 (146)
231 PLN02573 pyruvate decarboxylas 58.7 71 0.0015 34.5 10.3 110 133-254 418-548 (578)
232 TIGR02190 GlrX-dom Glutaredoxi 58.7 57 0.0012 25.0 7.2 73 282-359 5-78 (79)
233 PRK10853 putative reductase; P 57.9 20 0.00043 30.4 4.8 43 294-337 8-50 (118)
234 PF01565 FAD_binding_4: FAD bi 57.8 87 0.0019 26.5 8.9 76 227-303 3-81 (139)
235 cd06063 H2MP_Cyano-H2up This g 57.6 27 0.00059 30.5 5.8 55 287-345 1-61 (146)
236 cd00859 HisRS_anticodon HisRS 57.4 34 0.00074 25.9 5.8 56 286-344 3-60 (91)
237 PRK12753 transketolase; Review 57.1 64 0.0014 35.6 9.7 74 172-255 162-243 (663)
238 PLN02269 Pyruvate dehydrogenas 57.0 57 0.0012 33.3 8.7 72 172-255 176-256 (362)
239 PRK10264 hydrogenase 1 maturat 56.8 30 0.00064 32.1 6.1 56 285-344 4-66 (195)
240 PRK07282 acetolactate synthase 56.7 78 0.0017 34.1 10.2 110 133-254 408-537 (566)
241 cd00858 GlyRS_anticodon GlyRS 56.7 38 0.00083 28.4 6.3 58 285-346 27-88 (121)
242 cd03035 ArsC_Yffb Arsenate Red 56.1 22 0.00047 29.5 4.6 43 294-337 7-49 (105)
243 COG0426 FpaA Uncharacterized f 56.0 21 0.00044 36.8 5.3 53 286-341 248-303 (388)
244 TIGR02194 GlrX_NrdH Glutaredox 54.0 28 0.00062 26.2 4.7 56 295-352 8-64 (72)
245 cd01080 NAD_bind_m-THF_DH_Cycl 53.3 32 0.0007 31.0 5.6 53 283-343 43-95 (168)
246 PRK08327 acetolactate synthase 53.1 56 0.0012 35.2 8.4 143 93-254 390-563 (569)
247 TIGR00232 tktlase_bact transke 52.8 76 0.0017 35.0 9.4 74 172-256 158-240 (653)
248 KOG1185 Thiamine pyrophosphate 52.1 3.3E+02 0.0071 29.2 13.2 116 129-258 48-173 (571)
249 PRK10026 arsenate reductase; P 51.9 35 0.00076 30.0 5.4 43 294-337 10-52 (141)
250 cd03034 ArsC_ArsC Arsenate Red 51.9 23 0.0005 29.6 4.2 43 294-337 7-49 (112)
251 CHL00149 odpA pyruvate dehydro 51.7 83 0.0018 31.8 8.8 61 193-254 185-255 (341)
252 PF03129 HGTP_anticodon: Antic 51.6 33 0.00072 27.0 4.9 58 286-346 1-63 (94)
253 TIGR00014 arsC arsenate reduct 51.6 23 0.0005 29.7 4.1 43 294-337 7-49 (114)
254 cd00518 H2MP Hydrogenase speci 51.6 38 0.00082 29.2 5.6 53 289-345 2-60 (139)
255 KOG2862 Alanine-glyoxylate ami 51.3 65 0.0014 32.4 7.6 79 279-361 87-167 (385)
256 PRK10466 hybD hydrogenase 2 ma 51.2 52 0.0011 29.4 6.6 56 286-345 2-64 (164)
257 PF00456 Transketolase_N: Tran 50.5 1.2E+02 0.0025 30.6 9.7 101 144-256 114-241 (332)
258 PRK09004 FMN-binding protein M 50.4 1.3E+02 0.0027 26.3 8.8 83 289-380 5-94 (146)
259 cd06070 H2MP_like-2 Putative [ 50.4 42 0.00091 29.1 5.7 52 288-345 1-56 (140)
260 TIGR02690 resist_ArsH arsenica 50.2 64 0.0014 30.6 7.3 63 296-359 43-113 (219)
261 cd03418 GRX_GRXb_1_3_like Glut 49.2 46 0.00099 24.8 5.2 64 287-353 2-67 (75)
262 TIGR02189 GlrX-like_plant Glut 48.9 94 0.002 25.2 7.3 65 285-353 8-77 (99)
263 PLN02980 2-oxoglutarate decarb 48.8 88 0.0019 38.4 9.9 114 133-254 748-885 (1655)
264 TIGR00072 hydrog_prot hydrogen 48.4 49 0.0011 28.8 5.9 53 289-345 2-61 (145)
265 cd06068 H2MP_like-1 Putative [ 47.6 48 0.001 28.9 5.7 54 289-345 2-61 (144)
266 PF03102 NeuB: NeuB family; I 46.8 2.7E+02 0.0059 26.7 12.2 73 284-359 113-192 (241)
267 PRK03767 NAD(P)H:quinone oxido 46.1 80 0.0017 29.0 7.2 69 292-362 12-95 (200)
268 TIGR00130 frhD coenzyme F420-r 45.9 41 0.00089 29.7 5.0 60 285-345 3-70 (153)
269 cd00861 ProRS_anticodon_short 45.7 83 0.0018 24.5 6.4 58 286-346 3-65 (94)
270 cd03029 GRX_hybridPRX5 Glutare 44.9 1.3E+02 0.0027 22.3 7.1 69 286-359 2-71 (72)
271 TIGR00142 hycI hydrogenase mat 44.6 46 0.001 29.1 5.1 53 288-344 2-62 (146)
272 cd00738 HGTP_anticodon HGTP an 44.4 60 0.0013 25.1 5.4 57 286-345 3-64 (94)
273 PLN02374 pyruvate dehydrogenas 43.6 1E+02 0.0022 32.4 8.2 61 193-254 251-321 (433)
274 PRK11544 hycI hydrogenase 3 ma 43.6 54 0.0012 29.1 5.4 54 287-344 3-63 (156)
275 COG0655 WrbA Multimeric flavod 43.3 91 0.002 28.7 7.2 69 292-361 13-100 (207)
276 PRK10638 glutaredoxin 3; Provi 42.8 86 0.0019 24.2 6.0 65 286-353 3-68 (83)
277 PF02662 FlpD: Methyl-viologen 42.6 2E+02 0.0044 24.5 8.7 59 287-345 2-62 (124)
278 PF00289 CPSase_L_chain: Carba 42.5 89 0.0019 26.1 6.3 50 285-343 3-52 (110)
279 TIGR03394 indol_phenyl_DC indo 42.1 2E+02 0.0043 30.7 10.5 142 93-253 361-516 (535)
280 COG2241 CobL Precorrin-6B meth 41.8 1.2E+02 0.0026 28.5 7.7 84 285-379 95-181 (210)
281 PF04430 DUF498: Protein of un 40.5 14 0.0003 30.8 1.1 37 282-318 51-88 (110)
282 cd02977 ArsC_family Arsenate R 40.3 61 0.0013 26.3 4.9 43 294-337 7-49 (105)
283 PRK12754 transketolase; Review 39.9 2E+02 0.0043 31.9 10.1 74 172-256 162-244 (663)
284 PLN02409 serine--glyoxylate am 39.5 81 0.0017 32.2 6.7 23 324-346 154-178 (401)
285 cd03036 ArsC_like Arsenate Red 39.5 41 0.00089 27.9 3.8 43 294-337 7-49 (111)
286 PRK13344 spxA transcriptional 39.5 65 0.0014 27.8 5.2 43 294-337 8-50 (132)
287 PF00258 Flavodoxin_1: Flavodo 39.4 47 0.001 28.3 4.3 48 292-344 7-54 (143)
288 cd03412 CbiK_N Anaerobic cobal 39.3 2.4E+02 0.0052 24.0 9.4 76 286-361 2-95 (127)
289 PRK10569 NAD(P)H-dependent FMN 38.0 99 0.0022 28.4 6.5 63 296-359 17-89 (191)
290 TIGR03186 AKGDH_not_PDH alpha- 37.9 3.1E+02 0.0066 31.6 11.3 24 233-256 362-386 (889)
291 cd03032 ArsC_Spx Arsenate Redu 37.6 69 0.0015 26.7 4.9 42 294-336 8-49 (115)
292 TIGR00204 dxs 1-deoxy-D-xylulo 37.6 1.4E+02 0.0031 32.7 8.5 31 225-255 238-271 (617)
293 smart00226 LMWPc Low molecular 37.0 1.4E+02 0.003 25.4 6.9 39 300-346 44-82 (140)
294 PRK12559 transcriptional regul 37.0 78 0.0017 27.3 5.2 42 294-336 8-49 (131)
295 PRK06756 flavodoxin; Provision 36.8 2.7E+02 0.0059 23.8 9.1 81 292-378 12-93 (148)
296 cd02000 TPP_E1_PDC_ADC_BCADC T 36.2 1.6E+02 0.0034 28.8 8.0 60 193-254 154-224 (293)
297 TIGR03567 FMN_reduc_SsuE FMN r 35.8 1.2E+02 0.0027 26.9 6.6 64 295-359 15-88 (171)
298 cd05125 Mth938_2P1-like Mth938 35.7 23 0.00049 30.0 1.6 38 281-318 51-89 (114)
299 PF07931 CPT: Chloramphenicol 35.5 2E+02 0.0043 26.2 7.9 20 124-144 18-37 (174)
300 cd00115 LMWPc Substituted upda 35.3 2.2E+02 0.0047 24.3 7.9 87 300-407 48-141 (141)
301 PRK06372 translation initiatio 35.2 2.4E+02 0.0053 27.3 8.8 82 288-381 112-198 (253)
302 KOG1250 Threonine/serine dehyd 35.0 2.4E+02 0.0053 29.3 9.0 79 287-378 161-250 (457)
303 COG0695 GrxC Glutaredoxin and 35.0 1.1E+02 0.0023 23.9 5.4 60 287-347 3-64 (80)
304 PRK10824 glutaredoxin-4; Provi 34.7 1.1E+02 0.0025 25.8 5.8 64 284-353 14-86 (115)
305 TIGR02181 GRX_bact Glutaredoxi 34.7 93 0.002 23.5 4.9 60 294-355 7-67 (79)
306 COG2089 SpsE Sialic acid synth 34.4 1.3E+02 0.0028 30.4 6.8 74 282-358 145-225 (347)
307 TIGR03569 NeuB_NnaB N-acetylne 34.1 1.7E+02 0.0038 29.4 7.9 73 284-359 133-214 (329)
308 cd06211 phenol_2-monooxygenase 34.1 3.4E+02 0.0074 25.1 9.7 114 285-399 110-234 (238)
309 cd06198 FNR_like_3 NAD(P) bind 33.4 1.8E+02 0.0038 26.5 7.4 112 284-399 95-211 (216)
310 cd00640 Trp-synth-beta_II Tryp 33.3 3.8E+02 0.0082 25.0 9.9 131 224-378 49-188 (244)
311 PRK11200 grxA glutaredoxin 1; 33.3 1.7E+02 0.0037 22.5 6.3 71 287-361 3-81 (85)
312 TIGR01617 arsC_related transcr 33.0 70 0.0015 26.7 4.2 43 294-337 7-49 (117)
313 PRK06703 flavodoxin; Provision 32.4 1.3E+02 0.0028 26.0 6.0 84 289-379 5-93 (151)
314 PF00731 AIRC: AIR carboxylase 32.0 3.4E+02 0.0074 24.1 8.6 70 286-358 2-76 (150)
315 COG1691 NCAIR mutase (PurE)-re 31.8 4.7E+02 0.01 25.2 11.6 81 285-378 118-203 (254)
316 PRK00170 azoreductase; Reviewe 31.8 1.7E+02 0.0037 26.4 7.0 63 296-359 19-109 (201)
317 COG1171 IlvA Threonine dehydra 31.5 2.7E+02 0.0059 28.3 8.8 75 290-378 124-210 (347)
318 COG1504 Uncharacterized conser 31.4 49 0.0011 28.0 2.9 38 281-320 58-97 (121)
319 PRK10329 glutaredoxin-like pro 31.3 2.3E+02 0.0049 22.0 6.6 33 287-320 3-35 (81)
320 PF03853 YjeF_N: YjeF-related 31.1 1.2E+02 0.0025 27.2 5.6 51 287-337 29-81 (169)
321 TIGR01755 flav_wrbA NAD(P)H:qu 31.1 2.3E+02 0.005 25.9 7.7 68 292-362 11-94 (197)
322 TIGR00759 aceE pyruvate dehydr 30.6 5.4E+02 0.012 29.6 11.6 24 233-256 362-386 (885)
323 PF14097 SpoVAE: Stage V sporu 30.4 4.3E+02 0.0093 24.2 9.4 74 286-362 1-80 (180)
324 KOG4166 Thiamine pyrophosphate 30.3 1.9E+02 0.004 30.5 7.3 105 139-257 134-250 (675)
325 cd00006 PTS_IIA_man PTS_IIA, P 30.1 3.3E+02 0.0071 22.7 9.8 112 286-404 2-118 (122)
326 cd01474 vWA_ATR ATR (Anthrax T 29.6 60 0.0013 29.1 3.5 44 299-345 123-166 (185)
327 cd06189 flavin_oxioreductase N 29.5 4.1E+02 0.009 24.3 9.3 114 284-399 98-220 (224)
328 cd00248 Mth938-like Mth938-lik 28.8 30 0.00066 28.9 1.3 34 285-318 53-87 (109)
329 cd06064 H2MP_F420-Reduc Endope 28.7 79 0.0017 27.7 4.0 33 289-321 2-41 (150)
330 PF07905 PucR: Purine cataboli 28.6 2E+02 0.0043 24.2 6.3 69 288-357 45-120 (123)
331 PRK07308 flavodoxin; Validated 28.4 2.2E+02 0.0049 24.3 6.8 81 292-379 12-93 (146)
332 COG1440 CelA Phosphotransferas 28.4 1.2E+02 0.0025 25.4 4.5 46 284-331 48-94 (102)
333 PRK08114 cystathionine beta-ly 27.8 94 0.002 32.1 4.9 36 313-348 148-190 (395)
334 PRK12571 1-deoxy-D-xylulose-5- 27.6 4.2E+02 0.0091 29.2 10.2 36 219-255 241-280 (641)
335 PRK11761 cysM cysteine synthas 27.6 4.1E+02 0.0088 26.0 9.3 73 223-309 61-134 (296)
336 CHL00201 syh histidine-tRNA sy 27.3 1.5E+02 0.0032 30.8 6.4 58 285-345 326-385 (430)
337 TIGR03566 FMN_reduc_MsuE FMN r 27.1 1.9E+02 0.0042 25.6 6.4 63 296-359 16-91 (174)
338 cd05212 NAD_bind_m-THF_DH_Cycl 27.0 1.4E+02 0.0029 26.2 5.1 52 283-342 27-78 (140)
339 PRK08105 flavodoxin; Provision 26.8 63 0.0014 28.4 3.0 84 289-379 5-95 (149)
340 cd01482 vWA_collagen_alphaI-XI 26.8 1.2E+02 0.0026 26.4 4.9 54 288-344 108-163 (164)
341 cd05560 Xcc1710_like Xcc1710_l 26.7 44 0.00095 27.9 1.9 36 283-318 51-87 (109)
342 PLN02234 1-deoxy-D-xylulose-5- 26.6 6.3E+02 0.014 28.0 11.2 107 137-255 174-318 (641)
343 cd06067 H2MP_MemB-H2evol Endop 26.4 1.7E+02 0.0037 25.1 5.6 52 289-344 2-60 (136)
344 PRK09739 hypothetical protein; 26.1 1.8E+02 0.004 26.4 6.1 64 296-360 20-103 (199)
345 cd05569 PTS_IIB_fructose PTS_I 26.0 2.1E+02 0.0045 23.1 5.7 56 287-346 2-64 (96)
346 COG4565 CitB Response regulato 25.8 1.5E+02 0.0033 28.1 5.4 98 218-336 18-117 (224)
347 cd03798 GT1_wlbH_like This fam 25.6 5.5E+02 0.012 23.9 11.2 73 321-406 264-342 (377)
348 cd06187 O2ase_reductase_like T 25.4 3.9E+02 0.0084 24.2 8.3 114 284-398 98-219 (224)
349 PRK11921 metallo-beta-lactamas 25.3 7.2E+02 0.016 25.3 10.9 72 285-361 248-325 (394)
350 PRK08762 molybdopterin biosynt 25.3 2.3E+02 0.005 28.8 7.2 23 337-363 136-158 (376)
351 cd03415 CbiX_CbiC Archaeal sir 24.8 2.1E+02 0.0045 24.5 5.8 76 286-361 2-84 (125)
352 cd01472 vWA_collagen von Wille 24.7 1.3E+02 0.0028 26.1 4.7 55 287-344 107-163 (164)
353 COG1104 NifS Cysteine sulfinat 24.6 1.2E+02 0.0027 31.2 5.0 74 289-362 94-170 (386)
354 PRK08535 translation initiatio 24.6 3.8E+02 0.0083 26.6 8.5 64 300-375 161-229 (310)
355 PRK05568 flavodoxin; Provision 24.5 1.5E+02 0.0032 25.1 4.9 47 293-346 13-59 (142)
356 PF14258 DUF4350: Domain of un 24.5 1.7E+02 0.0037 21.7 4.7 39 300-347 8-46 (70)
357 TIGR02853 spore_dpaA dipicolin 24.2 1.6E+02 0.0035 28.8 5.6 55 283-340 150-214 (287)
358 PRK12483 threonine dehydratase 24.2 4.8E+02 0.01 28.0 9.6 120 228-377 88-220 (521)
359 cd03416 CbiX_SirB_N Sirohydroc 24.1 2.5E+02 0.0054 22.3 5.9 74 287-360 2-83 (101)
360 PHA03050 glutaredoxin; Provisi 24.0 3.9E+02 0.0084 22.1 7.1 68 284-355 12-87 (108)
361 PRK11104 hemG protoporphyrinog 24.0 2.3E+02 0.005 25.5 6.2 61 293-362 12-72 (177)
362 COG1707 ACT domain-containing 23.9 5E+02 0.011 23.8 8.0 88 284-377 83-177 (218)
363 PRK01655 spxA transcriptional 23.8 1.5E+02 0.0033 25.4 4.8 42 294-336 8-49 (131)
364 cd06212 monooxygenase_like The 23.7 5.2E+02 0.011 23.7 8.8 114 284-399 103-227 (232)
365 TIGR01162 purE phosphoribosyla 23.3 5E+02 0.011 23.3 8.0 65 289-356 4-72 (156)
366 cd06217 FNR_iron_sulfur_bindin 23.3 3.7E+02 0.0081 24.6 7.8 27 284-310 107-133 (235)
367 COG0543 UbiB 2-polyprenylpheno 23.3 2.8E+02 0.0062 26.4 7.1 72 274-346 96-172 (252)
368 TIGR01753 flav_short flavodoxi 23.1 2.7E+02 0.0057 23.2 6.2 50 290-346 3-56 (140)
369 TIGR01718 Uridine-psphlse urid 23.0 3.1E+02 0.0067 26.1 7.2 79 227-325 14-92 (245)
370 PF12500 TRSP: TRSP domain C t 22.9 1.2E+02 0.0027 27.1 4.1 33 283-315 56-88 (155)
371 cd01475 vWA_Matrilin VWA_Matri 22.7 1.5E+02 0.0032 27.6 4.8 57 287-346 112-170 (224)
372 TIGR02326 transamin_PhnW 2-ami 22.6 2.8E+02 0.006 27.4 7.2 28 324-351 146-173 (363)
373 PRK08306 dipicolinate synthase 22.5 1.8E+02 0.0039 28.6 5.6 55 283-340 151-215 (296)
374 TIGR00442 hisS histidyl-tRNA s 22.3 2.1E+02 0.0045 29.1 6.3 57 285-344 323-381 (397)
375 PF08859 DGC: DGC domain; Int 22.2 2.6E+02 0.0056 23.3 5.7 51 295-347 12-62 (110)
376 cd03801 GT1_YqgM_like This fam 21.9 4.7E+02 0.01 24.2 8.3 36 322-360 262-297 (374)
377 PRK05569 flavodoxin; Provision 21.9 1.8E+02 0.004 24.5 5.0 48 292-346 12-59 (141)
378 PF00975 Thioesterase: Thioest 21.8 1.4E+02 0.0029 27.2 4.4 29 286-314 67-95 (229)
379 TIGR01752 flav_long flavodoxin 21.7 5.2E+02 0.011 22.7 8.1 83 289-378 3-88 (167)
380 cd02017 TPP_E1_EcPDC_like Thia 21.7 8.9E+02 0.019 25.0 10.5 78 142-231 119-218 (386)
381 cd03414 CbiX_SirB_C Sirohydroc 21.6 4.5E+02 0.0097 21.4 7.4 76 286-361 2-84 (117)
382 PRK10537 voltage-gated potassi 21.6 1.9E+02 0.0042 29.8 5.8 32 284-318 240-271 (393)
383 cd03409 Chelatase_Class_II Cla 21.4 2.9E+02 0.0062 21.7 5.8 74 287-360 2-84 (101)
384 COG2805 PilT Tfp pilus assembl 21.4 89 0.0019 31.4 3.1 22 91-112 185-206 (353)
385 TIGR03249 KdgD 5-dehydro-4-deo 21.3 1.6E+02 0.0036 28.7 5.1 35 310-345 130-164 (296)
386 COG1908 FrhD Coenzyme F420-red 21.2 5.5E+02 0.012 22.2 8.1 42 310-351 27-74 (132)
387 cd06194 FNR_N-term_Iron_sulfur 21.0 5.6E+02 0.012 23.2 8.4 112 284-399 97-217 (222)
388 COG0062 Uncharacterized conser 20.9 1.9E+02 0.0041 27.1 5.1 46 287-332 53-98 (203)
389 PRK08639 threonine dehydratase 20.9 7.9E+02 0.017 25.3 10.3 113 227-361 75-202 (420)
390 PRK00037 hisS histidyl-tRNA sy 20.8 2.4E+02 0.0052 28.7 6.4 57 285-344 319-377 (412)
391 PF02571 CbiJ: Precorrin-6x re 20.8 4.6E+02 0.0099 25.2 7.9 85 287-378 3-103 (249)
392 TIGR03586 PseI pseudaminic aci 20.7 4.2E+02 0.009 26.7 7.8 70 287-359 136-213 (327)
393 PRK09444 pntB pyridine nucleot 20.6 1.4E+02 0.003 31.4 4.5 32 284-315 306-342 (462)
394 COG0541 Ffh Signal recognition 20.6 5.3E+02 0.012 27.2 8.6 17 166-182 71-87 (451)
395 COG1165 MenD 2-succinyl-6-hydr 20.5 6.7E+02 0.015 27.2 9.5 140 97-253 15-170 (566)
396 PRK10684 HCP oxidoreductase, N 20.4 3.1E+02 0.0066 27.1 6.9 111 284-398 111-232 (332)
397 PF00670 AdoHcyase_NAD: S-aden 20.4 1.2E+02 0.0026 27.4 3.5 58 282-342 21-85 (162)
398 PRK02261 methylaspartate mutas 20.3 4.9E+02 0.011 22.5 7.3 28 284-311 54-83 (137)
399 PRK10126 tyrosine phosphatase; 20.3 3.1E+02 0.0067 23.7 6.2 40 300-346 47-86 (147)
400 COG2820 Udp Uridine phosphoryl 20.3 1.5E+02 0.0033 28.6 4.3 79 226-324 18-96 (248)
401 cd03816 GT1_ALG1_like This fam 20.3 6.3E+02 0.014 25.6 9.4 105 285-406 270-379 (415)
402 PF07991 IlvN: Acetohydroxy ac 20.2 2E+02 0.0044 26.1 4.9 74 283-359 3-85 (165)
403 cd06210 MMO_FAD_NAD_binding Me 20.1 3.5E+02 0.0077 24.8 6.9 26 285-310 109-134 (236)
404 PLN02463 lycopene beta cyclase 20.1 1E+02 0.0023 32.2 3.5 38 285-325 29-66 (447)
405 PF11181 YflT: Heat induced st 20.1 66 0.0014 26.4 1.7 60 295-360 8-67 (103)
406 cd01521 RHOD_PspE2 Member of t 20.1 1.1E+02 0.0024 24.8 3.1 34 282-315 62-95 (110)
No 1
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=100.00 E-value=7.6e-78 Score=572.78 Aligned_cols=322 Identities=50% Similarity=0.839 Sum_probs=313.6
Q ss_pred cchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEEec
Q 015415 86 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGM 165 (407)
Q Consensus 86 ~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~ 165 (407)
++++++|++++|.+.|++|++|+++|+|++.+||+|++|++|.++||++|+|||||+|.+++|+|.|||+.|+||++++|
T Consensus 1 ~~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf~~T~GL~~kfG~~RV~DTPiaE~gi~G~avGaA~~GlrPivEiq 80 (324)
T COG0022 1 QMTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRVTKGLQEKFGEERVIDTPIAESGIAGIAVGAALTGLRPIVEIQ 80 (324)
T ss_pred CccHHHHHHHHHHHHHhcCCCEEEEcccccccCChhhhchhHHHHhCccceecCccchhhhHHHHHHHHHcCCcceEEEE
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCCcCccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHH
Q 015415 166 NMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAI 245 (407)
Q Consensus 166 ~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G~tHsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~ 245 (407)
+.+|++.++|||.|++++.+|||||++.+|+|++++.|..-..|.+|||++|++|.++|||+|++|+||.|++++++.|+
T Consensus 81 f~dF~~~a~dqi~n~aAk~ryrsgG~~~~PiviR~p~G~g~~~~~~HSqs~ea~f~h~PGlKVV~PStpyDAKGLL~aAI 160 (324)
T COG0022 81 FADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRTPNGGGIGGGAQHSQSLEALFAHIPGLKVVMPSTPYDAKGLLKAAI 160 (324)
T ss_pred ecchhHHHHHHHHHHHHHHhhhcCCceeCCEEEEcCCCCCCCchhhccCCHHHHHhcCCCceEEecCChHHHHHHHHHHh
Confidence 99999999999999999999999999999999999987766788999999999999999999999999999999999999
Q ss_pred hcCCCEEEeecccccc-CCCCCCCccccccCCceEEeecCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccC
Q 015415 246 RSENPVILFEHVLLYN-LKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPF 324 (407)
Q Consensus 246 ~~~~Pv~ir~~r~~y~-~~~~v~~~~~~~~~Gk~~vl~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pf 324 (407)
++++||++++++.+|+ .+.++|+++|.+|+||+++.|+|+|+|||+||.|++.+++|+++|+++||+++|||+|||+|+
T Consensus 161 rd~dPViflE~k~lY~~~~~eVP~~~Y~iPlGkA~i~reG~DvTivtyg~mv~~al~AAe~l~~~Gis~EVIDLRTl~Pl 240 (324)
T COG0022 161 RDPDPVIFLEHKRLYRSFKGEVPEEDYTIPLGKAKIVREGSDVTIVTYGAMVHTALEAAEELEKEGISAEVIDLRTLSPL 240 (324)
T ss_pred cCCCCEEEEecHHHhcccccCCCCCCccccccceeeEecCCceEEEEechHHHHHHHHHHHHhhcCCCeEEEeccccCcc
Confidence 9999999999999999 678899999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCHHHHHHHcCCCHHHHHHHHHH
Q 015415 325 DLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQ 404 (407)
Q Consensus 325 d~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~ 404 (407)
|.++|.++++||+++++|||....+|+|++|++.+.|++|++|++|+.|++.+|.+.|+...||+.+.+++++|++++++
T Consensus 241 D~etIi~SvkKTgR~viV~Ea~~~~g~gaei~A~i~e~~f~~LdAPi~Rv~g~d~P~p~~~~lE~~~lp~~~~I~~av~~ 320 (324)
T COG0022 241 DKETIIASVKKTGRLVIVHEAPKTGGIGAEIAALIAEEAFDYLDAPILRVAGPDTPVPYSAALEKAYLPNPERIVAAVKK 320 (324)
T ss_pred CHHHHHHHHHhhCcEEEEEeccccCChHHHHHHHHHHHHHHhhcCchhhhcCCCCCCCcchhHHhhhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhC
Q 015415 405 LCQ 407 (407)
Q Consensus 405 ll~ 407 (407)
+++
T Consensus 321 v~~ 323 (324)
T COG0022 321 VLE 323 (324)
T ss_pred Hhh
Confidence 874
No 2
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=100.00 E-value=3.3e-75 Score=578.04 Aligned_cols=321 Identities=79% Similarity=1.231 Sum_probs=303.5
Q ss_pred cchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCC-ceEeccchhHHHHHHHHHHHhcCCeeEEEe
Q 015415 86 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDL-RVLDTPIAENSFTGMGIGAAMTGLRPIVEG 164 (407)
Q Consensus 86 ~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~-R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t 164 (407)
+++||++|+++|.+++++||+++++++|++.++|.|+.+++|+++| |+ ||||+||+||+|+|+|+|||++|+|||+++
T Consensus 3 ~~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~f-p~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~~ 81 (327)
T CHL00144 3 EVFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKY-GDLRVLDTPIAENSFTGMAIGAAMTGLRPIVEG 81 (327)
T ss_pred cchHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHC-CCccEeeccccHHHHHHHHHHHHHCCCEEEEEe
Confidence 4789999999999999999999999999998888788889999999 88 999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCCcCccchHHHHHccCCCcEEEeeCCHHHHHHHHHHH
Q 015415 165 MNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAA 244 (407)
Q Consensus 165 ~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G~tHsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a 244 (407)
++++|++|+||||+|++|+++||+||++++||+++.+++.++++|+||||++|++|+++|||+|++|+|+.|++.+++++
T Consensus 82 ~~~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~~~g~~~~~~G~tHs~~~ea~~~~iPgl~V~~Psd~~d~~~~l~~a 161 (327)
T CHL00144 82 MNMGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQIVACSTPYNAKGLLKSA 161 (327)
T ss_pred ehhhHHHHHHHHHHHHHHHHhhccCCCccCCEEEEecCCCCCCCCccccccHHHHHhcCCCCEEEEeCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999776666689999999999999999999999999999999999999
Q ss_pred HhcCCCEEEeeccccccCCCCCCCccccccCCceEEeecCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccC
Q 015415 245 IRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPF 324 (407)
Q Consensus 245 ~~~~~Pv~ir~~r~~y~~~~~v~~~~~~~~~Gk~~vl~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pf 324 (407)
++.++|+|||+++.+|+..+.++++++.+++||++++++|.|++||+||.|+++|++|++.|+++||+++|||++|||||
T Consensus 162 ~~~~~Pv~ire~~~l~~~~~~v~~~~~~~~~Gk~~v~~~G~ditiia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ikPl 241 (327)
T CHL00144 162 IRSNNPVIFFEHVLLYNLKEEIPDNEYLLPLEKAEVVRPGNDITILTYSRMRHHVLQAVKVLVEKGYDPEIIDLISLKPL 241 (327)
T ss_pred HhCCCcEEEEEcHHhcCCCCCCCCCCccccCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEecCcCCCC
Confidence 99999999999999998656677777888999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCHHHHHHHcCCCHHHHHHHHHH
Q 015415 325 DLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQ 404 (407)
Q Consensus 325 d~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~ 404 (407)
|++.|.+++++|++|+|+|||+..||||++|++.+.+++|..++.|+.++|++|.|+++...+++.+|+|+++|+++|++
T Consensus 242 D~~~i~~~~~~t~~vv~vEE~~~~gGlG~~va~~l~e~~f~~~~~pv~rl~~~d~~~~~~~~~~~~~gl~~~~I~~~i~~ 321 (327)
T CHL00144 242 DLGTISKSVKKTHKVLIVEECMKTGGIGAELIAQINEHLFDELDAPIVRLSSQDVPTPYNGPLEEATVIQPAQIIEAVEQ 321 (327)
T ss_pred CHHHHHHHHHhhCcEEEEECCCCCCCHHHHHHHHHHHhchhhcCCCeEEEccCCCcCCCCccHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999998765567899999999999997767788889999999999999
Q ss_pred HhC
Q 015415 405 LCQ 407 (407)
Q Consensus 405 ll~ 407 (407)
+++
T Consensus 322 ~l~ 324 (327)
T CHL00144 322 IIT 324 (327)
T ss_pred HHh
Confidence 874
No 3
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=100.00 E-value=7.5e-73 Score=566.54 Aligned_cols=325 Identities=42% Similarity=0.750 Sum_probs=301.3
Q ss_pred cCcccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeE
Q 015415 82 KQGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPI 161 (407)
Q Consensus 82 ~~~~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~ 161 (407)
...++++||++|+++|.+++++|++++++++|++.++|.|+.+++|.++|+|+||||+||+||+|+|+|+|||++|+|||
T Consensus 22 ~~~~~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIAEq~~vg~AaGlA~~G~~P~ 101 (356)
T PLN02683 22 SAAKEMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYAGLKPV 101 (356)
T ss_pred ccccccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEE
Confidence 34556899999999999999999999999999998899888889999999999999999999999999999999999999
Q ss_pred EEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCCcCccchHHHHHccCCCcEEEeeCCHHHHHHHH
Q 015415 162 VEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLM 241 (407)
Q Consensus 162 ~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G~tHsq~~ea~~~~iPgl~V~~P~d~~e~~~~~ 241 (407)
+++++++|++|+||||+|++|+++||+||++++||+++++.|...+.|+|||+.++++||++|||+|++|+|+.|++.++
T Consensus 102 v~~~~~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~G~~~g~G~tH~~~~~a~lr~iPnl~V~~Pad~~e~~~~l 181 (356)
T PLN02683 102 VEFMTFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCFAAWYSSVPGLKVLAPYSSEDARGLL 181 (356)
T ss_pred EEEehhhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeCCCCCCCCCccccCHHHHHhcCCCCEEEEeCCHHHHHHHH
Confidence 99888999999999999999999999999999999999977766557999988888999999999999999999999999
Q ss_pred HHHHhcCCCEEEeeccccccCCCCC----CCccccccCCceEEeecCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEE
Q 015415 242 KAAIRSENPVILFEHVLLYNLKERI----PDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVID 317 (407)
Q Consensus 242 ~~a~~~~~Pv~ir~~r~~y~~~~~v----~~~~~~~~~Gk~~vl~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~ 317 (407)
+++++.++|+|||+++.++....++ .++++.+++|+++++++|+|++||++|+|+.+|++|++.|+++||+++|||
T Consensus 182 ~~a~~~~gPv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~r~G~dvtIia~G~~v~~Al~Aa~~L~~~GI~v~VId 261 (356)
T PLN02683 182 KAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIEREGKDVTIVAFSKMVGYALKAAEILAKEGISAEVIN 261 (356)
T ss_pred HHHHhCCCcEEEEEehhhccCCCCCCCCCCCccccccCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9999999999999887766533222 122467789999999999999999999999999999999999999999999
Q ss_pred ecccccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCHHHHHHHcCCCHHH
Q 015415 318 IRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQ 397 (407)
Q Consensus 318 ~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~gl~~~~ 397 (407)
++||||||++.|.++++++++|+|+|||+..||||++|++.+.+++|+.++.|+.++|++|.++|++..|++++.+++++
T Consensus 262 ~~~ikPlD~~~l~~~~~~t~~vvtvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~~d~~~p~~~~le~~~~p~~~~ 341 (356)
T PLN02683 262 LRSIRPLDRDTINASVRKTNRLVTVEEGWPQHGVGAEICASVVEESFDYLDAPVERIAGADVPMPYAANLERLALPQVED 341 (356)
T ss_pred CCCCCccCHHHHHHHHhhcCeEEEEeCCCcCCCHHHHHHHHHHHhchhccCCCeEEeccCCcCCCccHHHHHhhCCCHHH
Confidence 99999999999999999999999999999999999999999999876555779999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 015415 398 IVTAVEQLC 406 (407)
Q Consensus 398 I~~~i~~ll 406 (407)
|+++|++++
T Consensus 342 i~~a~~~~~ 350 (356)
T PLN02683 342 IVRAAKRAC 350 (356)
T ss_pred HHHHHHHHH
Confidence 999999987
No 4
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=7.9e-74 Score=533.23 Aligned_cols=346 Identities=54% Similarity=0.877 Sum_probs=325.2
Q ss_pred chhhhhhhhhhhcccCCCCCcccccCcccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceE
Q 015415 58 RRTQQLITNAVATKADSAASTSASKQGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVL 137 (407)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i 137 (407)
+..+.++.+..+.|-....+++ .++++.|+|++++|.|+|++|++|+++|++++.|+|+|+++++|.+|||+.|++
T Consensus 10 ~~~~r~~~~~~~~r~a~ts~r~----~~~mtvreALn~amdEEm~rD~~VfvmGEeV~qy~GaykvtkGL~~K~G~~RV~ 85 (359)
T KOG0524|consen 10 RRSLRLISNLVATRFAWTSARA----AKEMTVREALNQAMDEEMDRDPRVFVMGEEVGQYGGAYKVTKGLLDKFGDKRVL 85 (359)
T ss_pred HhHHHhhhhhhhhhhhhccccc----ceeeeHHHHHHHHHHHHhccCCcEEEechhhhhcCCeeehhhhHHHhcCCceee
Confidence 3455556666655543322222 678999999999999999999999999999999999999999999999999999
Q ss_pred eccchhHHHHHHHHHHHhcCCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCCcCccchHH
Q 015415 138 DTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHSQRLE 217 (407)
Q Consensus 138 ~~GIaE~~~vg~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G~tHsq~~e 217 (407)
|+||+|.+..|+|.|+|+.|+||+++.|...|.+.++|||.|++++.+|||||++++|+||++|+|...+.|++|||++.
T Consensus 86 DTPItE~gFtG~avGAA~~GLrPi~efMtfnFsmqAid~IiNsaakt~YmSgG~~~~piVfRGPnG~~~gv~AqHSQ~f~ 165 (359)
T KOG0524|consen 86 DTPITEMGFTGIAVGAAMAGLRPICEFMTFNFSMQAIDQIINSAAKTHYMSGGQQPVPIVFRGPNGAAAGVAAQHSQDFA 165 (359)
T ss_pred cCcchhcccchhhHhHHHhCcchhhhhhcchhHHHHHHHHHHHHHHHhcccCCceeccEEEeCCCCcccchhhhhhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEeeccccccCCCCCCCc----cccccCCceEEeecCCcEEEEEec
Q 015415 218 SYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDE----EYICNLEEAEMVRPGEHVTILTYS 293 (407)
Q Consensus 218 a~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir~~r~~y~~~~~v~~~----~~~~~~Gk~~vl~eG~dv~Iia~G 293 (407)
+|+.++||++|++|.+++|++++++.|+++++||+++++..+|+...+++++ +|..|+||+++.|+|+|+||+++.
T Consensus 166 ~wy~siPGlkvvapysaedakGLlKaAIRd~NPVV~lEnelLYg~~f~i~~E~ls~~fv~p~gkAkier~G~~iTivt~S 245 (359)
T KOG0524|consen 166 SWYGSIPGLKVVAPYSAEDAKGLLKAAIRDENPVVFLENELLYGLSFEIPEEALSKDFVLPLGKAKIEREGTHITIVTYS 245 (359)
T ss_pred HHhccCCCceEeccCChhhhhhHHHHhccCCCCeEEEechhhcCCCccCChhhcCcceeeeccceeeeecCCceEEEEec
Confidence 9999999999999999999999999999999999999999999976666554 488999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEE
Q 015415 294 RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVC 373 (407)
Q Consensus 294 ~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ 373 (407)
.|+..+++|++.|.++|++++|||+|+|+|||.++|..+++||.++++||++++.+|+|++|++.+.|+.|+++++|+.|
T Consensus 246 r~v~~~leAA~~L~~~Gvs~EVInlrSirP~D~~tI~~Sv~KT~~lvtVe~~~p~~gigaei~A~i~E~~fdyLdAPv~r 325 (359)
T KOG0524|consen 246 RMVGHCLEAAETLVAKGVSAEVINLRSIRPFDIETIGASVKKTNRLVTVEEGWPQFGIGAEICAQIMENAFDYLDAPVQR 325 (359)
T ss_pred hhHHHHHHHHHHHHhcCCCceeEeeeccCcccHHHHHHHHhhhceEEEEeccccccchhHHHHHHHHHHHHhhhcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCHHHHHHHcCCCHHHHHHHHHHHhC
Q 015415 374 LSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ 407 (407)
Q Consensus 374 ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~ll~ 407 (407)
+...|.|.||+.+||+...+++++|+.+++++|+
T Consensus 326 vtg~DvP~PYa~~lE~~a~p~~~~iV~Avk~~~~ 359 (359)
T KOG0524|consen 326 VTGADVPTPYAKTLEDWAVPQPADIVTAVKKLCN 359 (359)
T ss_pred hcCCCCCCccchhhHhhcCCCHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999986
No 5
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=100.00 E-value=3.1e-72 Score=557.33 Aligned_cols=322 Identities=44% Similarity=0.761 Sum_probs=300.4
Q ss_pred ccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEEe
Q 015415 85 HELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEG 164 (407)
Q Consensus 85 ~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t 164 (407)
.++++|++++++|.+++++|++++++++|++.++|.|+++++|+++|||+||||+||+||+|+|+|+|||++|+|||+++
T Consensus 2 ~~~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~~~~~~~~fgp~R~~d~gIaE~~~vg~AaGlA~~G~~Piv~~ 81 (327)
T PRK09212 2 AQLTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFAGLRPIVEF 81 (327)
T ss_pred CcchHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchhhHHHHHHhCCCceeecchhHHHHHHHHHHHHHcCCeeEEEe
Confidence 35789999999999999999999999999998899999999999999999999999999999999999999999999998
Q ss_pred cchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCCcCccchHHHHHccCCCcEEEeeCCHHHHHHHHHHH
Q 015415 165 MNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAA 244 (407)
Q Consensus 165 ~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G~tHsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a 244 (407)
++.+|++|+||||++++|+++||+||++++|+++++++|.++++|+||||++|++|+++|||+|++|+|+.|++.++++|
T Consensus 82 ~~~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G~tH~~~~ea~~r~iP~l~V~~P~d~~e~~~~l~~a 161 (327)
T PRK09212 82 MTFNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAAQHSQCYAAWYSHIPGLKVVAPYFAADCKGLLKTA 161 (327)
T ss_pred ehhhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCCcccccCHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 77799999999999999999999999999999999988888899999999999999999999999999999999999999
Q ss_pred HhcCCCEEEeeccccccCCCCCCCccccccCCceEEeecCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccC
Q 015415 245 IRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPF 324 (407)
Q Consensus 245 ~~~~~Pv~ir~~r~~y~~~~~v~~~~~~~~~Gk~~vl~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pf 324 (407)
++.++|+||++++.+|+..++++++++.+++||++++++|+|++||+||+++..|++|++.|+++|++++|||+++|+||
T Consensus 162 ~~~~~Pv~i~~~~~~~~~~~~~~~~~~~~~~Gk~~vl~~G~di~iva~G~~~~~a~eAa~~L~~~Gi~v~vi~~~~l~Pl 241 (327)
T PRK09212 162 IRDPNPVIFLENEILYGHSHEVPEEEESIPIGKAAILREGSDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLRTLRPL 241 (327)
T ss_pred HhCCCcEEEEEchhhcCCCCCCCCCCccccCCeeEEEEeCCCEEEEEccHHHHHHHHHHHHHHhcCCcEEEEEEecCCCC
Confidence 99999999999988887555566666788999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCHHHHHHHcCCCHHHHHHHHHH
Q 015415 325 DLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQ 404 (407)
Q Consensus 325 d~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~ 404 (407)
|++.|.++++++++|+|||||+..||||++|++++.++.+..++.++.+++++|.|++++..++++..+++++|+++|++
T Consensus 242 d~~~i~~~~~~~~~vv~vEe~~~~gGlg~~la~~l~~~~~~~~~~~i~r~~~~~~~~~~~~~le~~~l~~~~~I~~~i~~ 321 (327)
T PRK09212 242 DTETIIESVKKTNRLVVVEEGWPFAGVGAEIAALIMKEAFDYLDAPVERVTGKDVPLPYAANLEKLALPSEEDIIEAVKK 321 (327)
T ss_pred CHHHHHHHHHhCCeEEEEcCCCCCCCHHHHHHHHHHHhCccccCCCeEEEcCCCccCCchHHHHHhcCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999997654456799999999999988754444443599999999999
Q ss_pred Hh
Q 015415 405 LC 406 (407)
Q Consensus 405 ll 406 (407)
++
T Consensus 322 ~~ 323 (327)
T PRK09212 322 VC 323 (327)
T ss_pred HH
Confidence 86
No 6
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-71 Score=557.51 Aligned_cols=324 Identities=48% Similarity=0.754 Sum_probs=305.2
Q ss_pred CcccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEE
Q 015415 83 QGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIV 162 (407)
Q Consensus 83 ~~~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~ 162 (407)
+..+++||++++++|.+++++||+++++++|++.+||+++.+++|+++|||+||||+||+||+|+|+|+|||++|+|||+
T Consensus 31 ~~~~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pvv 110 (355)
T PTZ00182 31 ATVKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPIA 110 (355)
T ss_pred cccchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEEE
Confidence 57788999999999999999999999999999888888888899999999999999999999999999999999999999
Q ss_pred EecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCCcCccchHHHHHccCCCcEEEeeCCHHHHHHHHH
Q 015415 163 EGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMK 242 (407)
Q Consensus 163 ~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G~tHsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~ 242 (407)
++++++|++|+||||+|++|+++||+||++++|+++++++|..+.+|+||||++|++|+++|||+|++|+|+.|++.+++
T Consensus 111 ~~~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~~~ea~lr~iPn~~V~~Psd~~e~~~~l~ 190 (355)
T PTZ00182 111 EFMFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQSFEAYFAHVPGLKVVAPSDPEDAKGLLK 190 (355)
T ss_pred EechhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccchHHHHHhcCCCCEEEeeCCHHHHHHHHH
Confidence 98788999999999999999999999999999999998888888999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEeeccccccCC-CCCCCccccccCCceEEeecCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEeccc
Q 015415 243 AAIRSENPVILFEHVLLYNLK-ERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSL 321 (407)
Q Consensus 243 ~a~~~~~Pv~ir~~r~~y~~~-~~v~~~~~~~~~Gk~~vl~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l 321 (407)
++++.++|+||++++.+|... +.++++++.+++||++++++|+|++||+||+++..|++|++.|+++|++++|||+++|
T Consensus 191 ~a~~~~~P~~i~~p~~l~r~~~~~~~~~~~~~~~Gk~~vl~~G~di~Iia~Gs~~~~aleAa~~L~~~Gi~v~vI~~~~l 270 (355)
T PTZ00182 191 AAIRDPNPVVFFEPKLLYRESVEVVPEADYTLPLGKAKVVREGKDVTIVGYGSQVHVALKAAEELAKEGISCEVIDLRSL 270 (355)
T ss_pred HHHhCCCcEEEEeehHHhCCCCCCCCcccccccCCcceEecCCCCEEEEEeCHHHHHHHHHHHHHHhCCCcEEEEEEeeC
Confidence 999999999999998877532 2334445778899999999999999999999999999999999999999999999999
Q ss_pred ccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCHHHHHHHcCCCHHHHHHH
Q 015415 322 KPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTA 401 (407)
Q Consensus 322 ~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~ 401 (407)
+|||++.|.+.++++++|+|||||+..||||++|++++.+++++.++.|+.++|++|.|+|++..|++.+++++++|+++
T Consensus 271 ~Pld~e~i~~~~~~~~~IvvvEE~~~~GGlG~~Va~~l~e~~~~~l~~pv~ri~~~d~~~p~~~~le~~~~~~~~~i~~~ 350 (355)
T PTZ00182 271 RPWDRETIVKSVKKTGRCVIVHEAPPTCGIGAEIAAQIMEDCFLYLEAPIKRVCGADTPFPYAKNLEPAYLPDKEKVVEA 350 (355)
T ss_pred CCCCHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHhhhhhcCCCeEEeCCCCccCCCChHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999998776667899999999999999988999999999999999
Q ss_pred HHHHh
Q 015415 402 VEQLC 406 (407)
Q Consensus 402 i~~ll 406 (407)
|++++
T Consensus 351 ~~~~~ 355 (355)
T PTZ00182 351 AKRVL 355 (355)
T ss_pred HHHhC
Confidence 99875
No 7
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=100.00 E-value=2.8e-71 Score=570.30 Aligned_cols=324 Identities=43% Similarity=0.747 Sum_probs=302.2
Q ss_pred cccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEE
Q 015415 84 GHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVE 163 (407)
Q Consensus 84 ~~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~ 163 (407)
..++++|++++++|.+++++|++++++++|++.++|.|+++++|.++|||+||||+||+||+|+|+|+|||++|+|||++
T Consensus 139 ~~~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fgp~R~id~gIaEq~~vg~AaGlA~~G~rPiv~ 218 (464)
T PRK11892 139 MVTMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVIDTPITEHGFAGIGVGAAFAGLKPIVE 218 (464)
T ss_pred ccchHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhCccceeecCccHHHHHHHHHHHHhCCCEEEEE
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCCcCccchHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 015415 164 GMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKA 243 (407)
Q Consensus 164 t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G~tHsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~ 243 (407)
+++++|++|+||||+|++|+.+||+||++++||+|++++|.....|++|++.+.++|+++|||+|++|+|+.|++.++++
T Consensus 219 ~~~~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~G~hhs~~d~a~~~~iPgl~V~~P~d~~d~~~ll~~ 298 (464)
T PRK11892 219 FMTFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARVAAQHSQDYAAWYSHIPGLKVVAPYSAADAKGLLKA 298 (464)
T ss_pred EehHHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCCCCccccCHHHHHhhCCCCEEEEeCCHHHHHHHHHH
Confidence 88899999999999999999999999999999999998776555888888888899999999999999999999999999
Q ss_pred HHhcCCCEEEeeccccccCCCCCCC-ccccccCCceEEeecCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccc
Q 015415 244 AIRSENPVILFEHVLLYNLKERIPD-EEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLK 322 (407)
Q Consensus 244 a~~~~~Pv~ir~~r~~y~~~~~v~~-~~~~~~~Gk~~vl~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~ 322 (407)
+++.++|+||++++.+|+....+++ +++.+++||++++|+|+|++||+||.|+..|++|++.|+++||+++|||++||+
T Consensus 299 ai~~~~Pv~ile~~~ry~~~~~vp~~~~~~~~~Gka~v~r~G~DvtIva~G~~v~~Al~Aa~~L~~~GI~~~VIdl~tlk 378 (464)
T PRK11892 299 AIRDPNPVIFLENEILYGQSFDVPKLDDFVLPIGKARIHREGKDVTIVSFSIGMTYALKAAEELAKEGIDAEVIDLRTIR 378 (464)
T ss_pred HhhCCCcEEEEechhhcCCCCCCCCcCCccccCceEEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 9999999999999988875433443 457789999999999999999999999999999999999999999999999999
Q ss_pred cCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCHHHHHHHcCCCHHHHHHHH
Q 015415 323 PFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAV 402 (407)
Q Consensus 323 Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i 402 (407)
|||.++|.+++++|++|||+|||+..||||++|++++.+++|++++.|+.++|++|.|.++...|+++..+++++|++++
T Consensus 379 PlD~~~i~~sv~kt~~vvtvEE~~~~gGlG~~va~~l~e~~f~~l~~pv~ri~~~d~~~~~~~~le~~~l~~~~~Iv~av 458 (464)
T PRK11892 379 PMDTETIVESVKKTNRLVTVEEGWPQSGVGAEIAARVMEQAFDYLDAPVLRVTGKDVPMPYAANLEKLALPSVAEVVEAV 458 (464)
T ss_pred cCCHHHHHHHHHhcCeEEEEeCCCcCCcHHHHHHHHHHHhCccccCCCeEEeccCCccCCcHHHHHHhcCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999998777788999999999999977766666656999999999
Q ss_pred HHHhC
Q 015415 403 EQLCQ 407 (407)
Q Consensus 403 ~~ll~ 407 (407)
++++|
T Consensus 459 ~~~~~ 463 (464)
T PRK11892 459 KAVCY 463 (464)
T ss_pred HHHhh
Confidence 99885
No 8
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-70 Score=520.00 Aligned_cols=302 Identities=22% Similarity=0.336 Sum_probs=278.0
Q ss_pred ccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEEe
Q 015415 85 HELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEG 164 (407)
Q Consensus 85 ~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t 164 (407)
...++|++|+++|.++.++|+++|++++|+..|+.+ ..|.++| |+||+|+||+||+|+|+|+|+|++|++||++|
T Consensus 5 ~~~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~~----~~f~~~f-PdR~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~t 79 (312)
T COG3958 5 NTESLRKVYGETLAELGRKNSDIVVLDADLSSSTKT----GYFAKEF-PDRFFNVGIAEQDMVGTAAGLALAGKKPFVST 79 (312)
T ss_pred cchHHHHHHHHHHHHHHhcCCCEEEEecccccccch----hHHHHhC-chhheecchHHHHHHHHHHHHHhcCCCceeec
Confidence 356899999999999999999999999999987764 7899999 99999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCC-CCCCcCccchHH--HHHccCCCcEEEeeCCHHHHHHH
Q 015415 165 MNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVG-RQLGAEHSQRLE--SYFQSIPGIQMVACSTPYNAKGL 240 (407)
Q Consensus 165 ~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~-~~~G~tHsq~~e--a~~~~iPgl~V~~P~d~~e~~~~ 240 (407)
++.|.+.|+||||+|++||+ ++||.+++ .+|.+ +.+|+|| |++| ++||.+||++|+.|+|+.+++.+
T Consensus 80 fa~F~s~Ra~EQir~~iay~--------~lnVKiv~t~~G~t~g~dG~sH-q~~EDiaimR~lpn~~V~~P~D~v~~~~i 150 (312)
T COG3958 80 FAAFLSRRAWEQIRNSIAYN--------NLNVKIVATHAGVTYGEDGSSH-QALEDIAIMRGLPNMTVIAPADAVETRAI 150 (312)
T ss_pred hHHHHHHHHHHHHHHHhhhc--------cCCeEEEEecCCcccCCCCccc-hhHHHHHHHhcCCCceEEccCcHHHHHHH
Confidence 77665669999999999998 78998887 46764 7799999 8886 99999999999999999999999
Q ss_pred HHHHHhcCCCEEEeeccccccCCCCCCCccccccCCceEEeecCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecc
Q 015415 241 MKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRS 320 (407)
Q Consensus 241 ~~~a~~~~~Pv~ir~~r~~y~~~~~v~~~~~~~~~Gk~~vl~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~ 320 (407)
++++.++++|+|+|+.|..++ ..++.++|.|++||++++|+|.|++||++|.|+.++++|++.|+++||++.|||++|
T Consensus 151 ~~~~~~~~GP~Y~Rl~R~~~p--~~~~~~~~~F~iGka~vLrdG~D~tiiA~G~mv~~al~AA~~L~~~GIsa~Vi~m~t 228 (312)
T COG3958 151 LDQIADYKGPVYMRLGRGKVP--VVVDEGGYTFEIGKANVLRDGSDLTIIATGVMVAEALEAAEILKKEGISAAVINMFT 228 (312)
T ss_pred HHHHHhcCCCEEEEecCCCCC--ceecCCCceEeccceeEeecCCceEEEecCcchHHHHHHHHHHHhcCCCEEEEecCc
Confidence 999999999999999885432 123334589999999999999999999999999999999999999999999999999
Q ss_pred cccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCH--HHHHHHcCCCHHHH
Q 015415 321 LKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYA--GTLEEWTVVQPAQI 398 (407)
Q Consensus 321 l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~--~~l~~~~gl~~~~I 398 (407)
|||+|++.|.+..+++++|+|+|||+.+||||+.|++.+.+++ +.|+.++|++|.|..++ .+|.++||+++++|
T Consensus 229 IKPiD~~~i~~~A~~t~~IvT~EeHsi~GGlGsaVAEvlse~~----p~~~~riGvp~~fg~sg~~~~Ll~~ygl~~~~I 304 (312)
T COG3958 229 IKPIDEQAILKAARETGRIVTAEEHSIIGGLGSAVAEVLSENG----PTPMRRIGVPDTFGRSGKADELLDYYGLDPESI 304 (312)
T ss_pred cCCCCHHHHHHHHhhcCcEEEEecceeecchhHHHHHHHHhcC----CcceEEecCCchhccccchHHHHHHhCCCHHHH
Confidence 9999999999999999999999999999999999999999985 58899999999999875 78999999999999
Q ss_pred HHHHHHHh
Q 015415 399 VTAVEQLC 406 (407)
Q Consensus 399 ~~~i~~ll 406 (407)
++++++++
T Consensus 305 ~~~v~~~~ 312 (312)
T COG3958 305 AARVLELL 312 (312)
T ss_pred HHHHHhhC
Confidence 99999875
No 9
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=1.7e-63 Score=527.89 Aligned_cols=306 Identities=16% Similarity=0.183 Sum_probs=274.2
Q ss_pred cchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEEec
Q 015415 86 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGM 165 (407)
Q Consensus 86 ~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~ 165 (407)
..+|+++|+++|.+++++|++||++++|++..+| +..|+++| |+||||+||+||+|+++|+|||+.|+|||+++
T Consensus 380 ~~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gtg----l~~f~~~f-PdRffDvGIAEQhaVt~AAGLA~~G~kPvv~i- 453 (701)
T PLN02225 380 RRTYSDCFVEALVMEAEKDRDIVVVHAGMEMDAS----LITFQERF-PDRFFNVGMAEQHAVTFSAGLSSGGLKPFCII- 453 (701)
T ss_pred CcCHHHHHHHHHHHHHhhCCCEEEEeCCccCccc----HHHHHHHc-cccccccCccHHHHHHHHHHHHHCCCEEEEEe-
Confidence 5689999999999999999999999999975333 48999999 99999999999999999999999999999996
Q ss_pred chhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCCCCcCccchHH-HHHccCCCcEEEeeCCHHHHHHHHHH
Q 015415 166 NMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQLGAEHSQRLE-SYFQSIPGIQMVACSTPYNAKGLMKA 243 (407)
Q Consensus 166 ~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~~G~tHsq~~e-a~~~~iPgl~V~~P~d~~e~~~~~~~ 243 (407)
|+.|++|+||||++++|++ ++||++++ ++|.++.+|+||++.+| ++|+++|||+|++|+|++|++.++++
T Consensus 454 ystFlqRAyDQI~~Dval~--------~lpV~~vid~aGlvg~DG~TH~g~~Dia~lr~IPnm~V~aPsD~~El~~mL~~ 525 (701)
T PLN02225 454 PSAFLQRAYDQVVHDVDRQ--------RKAVRFVITSAGLVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMVAT 525 (701)
T ss_pred ehhHHHHHHHHHHHHHHhh--------cCCceEEEECCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 5789999999999999998 78888887 46777889999988888 99999999999999999999999999
Q ss_pred HHh-cCCCEEEeeccccccCCCCCCCccccccCCceEEeecCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccc
Q 015415 244 AIR-SENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLK 322 (407)
Q Consensus 244 a~~-~~~Pv~ir~~r~~y~~~~~v~~~~~~~~~Gk~~vl~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~ 322 (407)
|+. .++|+|||++|..+...+...++++.+++||++++++|.|++||++|.|++.|++|++.|+++||+++|||++|||
T Consensus 526 A~~~~~gPv~IR~pRg~~~~~~~~~~~~~~~~iGK~~vlreG~dvtIia~G~mv~~Al~AA~~L~~~GI~vtVIdlr~ik 605 (701)
T PLN02225 526 AAYVTDRPVCFRFPRGSIVNMNYLVPTGLPIEIGRGRVLVEGQDVALLGYGAMVQNCLHAHSLLSKLGLNVTVADARFCK 605 (701)
T ss_pred HHhcCCCCEEEEecccccCCCCcCCCCCccccCcceEEEEeCCCEEEEeccHHHHHHHHHHHHHHhcCCCEEEEecCCCC
Confidence 985 5799999999975432111112346788999999999999999999999999999999999999999999999999
Q ss_pred cCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCH--HHHHHHcCCCHHHHHH
Q 015415 323 PFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYA--GTLEEWTVVQPAQIVT 400 (407)
Q Consensus 323 Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~--~~l~~~~gl~~~~I~~ 400 (407)
|||++.|.++++++++|||||||.. ||+|++|++++.+++......++.++|++|.|++++ ++|.+.+|+|+++|++
T Consensus 606 PLD~e~I~~~~~k~~~vVTvEE~~~-GG~Gs~Va~~l~~~~~~~~~~~v~~iGipd~F~~~G~~~~ll~~~GLdae~I~~ 684 (701)
T PLN02225 606 PLDIKLVRDLCQNHKFLITVEEGCV-GGFGSHVAQFIALDGQLDGNIKWRPIVLPDGYIEEASPREQLALAGLTGHHIAA 684 (701)
T ss_pred CCCHHHHHHHHhhcCeEEEEcCCCC-CchHHHHHHHHHhcCCCcCCCcEEEEecCCcCcCCCCHHHHHHHhCcCHHHHHH
Confidence 9999999999999999999999997 999999999999875210135799999999999885 7889999999999999
Q ss_pred HHHHHh
Q 015415 401 AVEQLC 406 (407)
Q Consensus 401 ~i~~ll 406 (407)
+|++++
T Consensus 685 ~i~~~l 690 (701)
T PLN02225 685 TALSLL 690 (701)
T ss_pred HHHHHH
Confidence 999876
No 10
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=100.00 E-value=2.6e-61 Score=514.34 Aligned_cols=303 Identities=20% Similarity=0.276 Sum_probs=278.1
Q ss_pred cchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEEec
Q 015415 86 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGM 165 (407)
Q Consensus 86 ~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~ 165 (407)
..+++++|+++|.+++++|++|+++++|+..++| +++|+++| |+||||+||+||+|+++|+|||++|++||+++
T Consensus 309 ~~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~----~~~f~~~f-P~R~~d~GIaEq~~vg~AaGlA~~G~~Pvv~~- 382 (617)
T TIGR00204 309 LPSYSKIFSDTLCELAKKDNKIVGITPAMPEGSG----LDKFSRKF-PDRYFDVAIAEQHAVTFAAGMAIEGYKPFVAI- 382 (617)
T ss_pred CccHHHHHHHHHHHHHhhCcCEEEEECCccCCcC----hHHHHHHC-ccccccCCccHHHHHHHHHHHHHCCCEEEEEe-
Confidence 4679999999999999999999999999965444 48999999 99999999999999999999999999999997
Q ss_pred chhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec-CCCCCCCCcCccchHH-HHHccCCCcEEEeeCCHHHHHHHHHH
Q 015415 166 NMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGVGRQLGAEHSQRLE-SYFQSIPGIQMVACSTPYNAKGLMKA 243 (407)
Q Consensus 166 ~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~~~~~G~tHsq~~e-a~~~~iPgl~V~~P~d~~e~~~~~~~ 243 (407)
|+.|++|+||||++++|++ ++||+++++ +|.++.+|+|||+.+| ++|+++|||+|++|+|+.|++.++++
T Consensus 383 ~a~Fl~ra~dQi~~~~a~~--------~lpV~i~~~~~G~~g~dG~tH~~~~dia~lr~iPgl~V~~Psd~~e~~~~l~~ 454 (617)
T TIGR00204 383 YSTFLQRAYDQVVHDVCIQ--------KLPVLFAIDRAGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYT 454 (617)
T ss_pred cHHHHHHHHHHHHHHHHhc--------CCCEEEEEECCCcCCCCCcccccchHHHHHhcCCCcEEEeeCCHHHHHHHHHH
Confidence 7889999999999999997 899999985 6777889999988888 99999999999999999999999999
Q ss_pred HHhcC-CCEEEeeccccccCCCCCCCccccccCCceEEeecCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccc
Q 015415 244 AIRSE-NPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLK 322 (407)
Q Consensus 244 a~~~~-~Pv~ir~~r~~y~~~~~v~~~~~~~~~Gk~~vl~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~ 322 (407)
|++.+ +|+|||++|..+.... ..+.++.+++|+++++++|.|++||++|.|++.|++|++.|+++||+++|||++||+
T Consensus 455 a~~~~~~Pv~ir~~r~~~~~~~-~~~~~~~~~~Gk~~vlr~G~dvtIva~G~~v~~al~Aa~~L~~~gi~~~VId~~~lk 533 (617)
T TIGR00204 455 GYHYDDGPIAVRYPRGNAVGVE-LTPEPEKLPIGKSEVLRKGEKILILGFGTLVPEALEVAESLNEKGIEATVVDARFVK 533 (617)
T ss_pred HHhCCCCCEEEEEccCCcCCcc-cCCccccccCCceEEEEcCCCEEEEEcCHHHHHHHHHHHHHHhcCCCEEEEecCcCC
Confidence 99965 9999999987653211 122346789999999999999999999999999999999999999999999999999
Q ss_pred cCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCH--HHHHHHcCCCHHHHHH
Q 015415 323 PFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYA--GTLEEWTVVQPAQIVT 400 (407)
Q Consensus 323 Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~--~~l~~~~gl~~~~I~~ 400 (407)
|||++.|.++++++++|||||||+..||||++|++++.+++ ++.++.++|++|.|++++ ++|.+++|+|+++|++
T Consensus 534 PlD~e~i~~~~~k~~~vvtvEE~~~~GGlGs~v~~~l~~~~---~~~~v~~ig~~d~~~~~g~~~~L~~~~Gl~~~~I~~ 610 (617)
T TIGR00204 534 PLDEELILEIAASHEKLVTVEENAIMGGAGSAVLEFLMDQN---KLVPVKRLGIPDFFIPHGTQEEVLAELGLDTAGMEA 610 (617)
T ss_pred cCCHHHHHHHHhhcCeEEEEECCCCccChHHHHHHHHHhcC---CCCCeEEEeCCCcCcCCCCHHHHHHHHCcCHHHHHH
Confidence 99999999999999999999999999999999999999975 367899999999999875 6899999999999999
Q ss_pred HHHHHh
Q 015415 401 AVEQLC 406 (407)
Q Consensus 401 ~i~~ll 406 (407)
+|++++
T Consensus 611 ~i~~~~ 616 (617)
T TIGR00204 611 KILAWL 616 (617)
T ss_pred HHHHhh
Confidence 999886
No 11
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=100.00 E-value=4.6e-61 Score=491.99 Aligned_cols=305 Identities=19% Similarity=0.260 Sum_probs=279.6
Q ss_pred cccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEE
Q 015415 84 GHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVE 163 (407)
Q Consensus 84 ~~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~ 163 (407)
....+|.++|+++|.+++++|+++|.+++.|..-+| +..|+++| |+||||+|||||+++++|+|||..|+|||++
T Consensus 313 ~~~~sys~vf~~~L~~~a~~d~~ivaITaAM~~gtG----L~~F~~~f-P~R~fDVGIAEQHAVT~AAGlA~~G~kPvva 387 (627)
T COG1154 313 PSAPSYTKVFGDTLCELAAKDEKIVAITAAMPEGTG----LVKFSKKF-PDRFFDVGIAEQHAVTFAAGLAAEGMKPVVA 387 (627)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEecCCCCCCC----hHHHHHhC-chhheehhhhHHHHHHHHHHHHhCCCCCEEE
Confidence 556779999999999999999999999999985444 37999999 9999999999999999999999999999999
Q ss_pred ecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCCCCcCccchHH-HHHccCCCcEEEeeCCHHHHHHHH
Q 015415 164 GMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQLGAEHSQRLE-SYFQSIPGIQMVACSTPYNAKGLM 241 (407)
Q Consensus 164 t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~~G~tHsq~~e-a~~~~iPgl~V~~P~d~~e~~~~~ 241 (407)
+|++|+||||||+.+|+|.+ ++||+++. ++|.+|.||+||++.+| ++|+++|||+|++|+|.+|++.++
T Consensus 388 -IYSTFLQRAYDQliHDvaiq--------nLPV~faIDRAGivG~DG~TH~G~fDls~l~~iPnmvi~aP~de~el~~ml 458 (627)
T COG1154 388 -IYSTFLQRAYDQLIHDVAIQ--------NLPVTFAIDRAGIVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQML 458 (627)
T ss_pred -EecHHHHHHHHHHHHHHHhc--------cCCeEEEEecCcccCCCCCccccHHHHHHHhcCCCcEEecCCCHHHHHHHH
Confidence 59999999999999999998 89999998 59999999999988998 999999999999999999999999
Q ss_pred HHHHhcC-CCEEEeeccccccCCCCCCCccccccCCceEEeecCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecc
Q 015415 242 KAAIRSE-NPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRS 320 (407)
Q Consensus 242 ~~a~~~~-~Pv~ir~~r~~y~~~~~v~~~~~~~~~Gk~~vl~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~ 320 (407)
++++.++ +|+.||.||..-... ....+...+++|||+++++|.|++||++|.|+..|++|+++|.++||+++|||+++
T Consensus 459 ~ta~~~~~gP~AiRyPrg~~~~~-~~~~~~~~~~~Gk~~i~~~G~~vail~~G~~~~~al~vae~L~~~Gi~~TVvd~rf 537 (627)
T COG1154 459 YTALAQDDGPVAIRYPRGNGVGV-ILTPELEPLEIGKGELLKEGEKVAILAFGTMLPEALKVAEKLNAYGISVTVVDPRF 537 (627)
T ss_pred HHHHhcCCCCeEEEecCCCCCCC-CcccccccccccceEEEecCCcEEEEecchhhHHHHHHHHHHHhcCCCcEEEcCee
Confidence 9999986 799999888631111 11111345789999999999999999999999999999999999999999999999
Q ss_pred cccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCH--HHHHHHcCCCHHHH
Q 015415 321 LKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYA--GTLEEWTVVQPAQI 398 (407)
Q Consensus 321 l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~--~~l~~~~gl~~~~I 398 (407)
+||+|++.|++++++++.+||+||+...||+|+.|++++.+.++ ..|+.++|++|.|++++ ++++..+|+|++.|
T Consensus 538 vkPlD~~ll~~La~~h~~~vtlEe~~~~GG~Gs~v~efl~~~~~---~~~v~~lglpd~fi~hg~~~el~~~~gLd~~~i 614 (627)
T COG1154 538 VKPLDEALLLELAKSHDLVVTLEENVVDGGFGSAVLEFLAAHGI---LVPVLNLGLPDEFIDHGSPEELLAELGLDAEGI 614 (627)
T ss_pred cCCCCHHHHHHHHhhcCeEEEEecCcccccHHHHHHHHHHhcCC---CCceEEecCChHhhccCCHHHHHHHcCCCHHHH
Confidence 99999999999999999999999999999999999999999864 58899999999999985 78899999999999
Q ss_pred HHHHHHHh
Q 015415 399 VTAVEQLC 406 (407)
Q Consensus 399 ~~~i~~ll 406 (407)
+++|.+++
T Consensus 615 ~~~i~~~l 622 (627)
T COG1154 615 ARRILEWL 622 (627)
T ss_pred HHHHHHHH
Confidence 99999876
No 12
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=5.6e-60 Score=504.05 Aligned_cols=305 Identities=19% Similarity=0.221 Sum_probs=271.4
Q ss_pred cchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEEec
Q 015415 86 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGM 165 (407)
Q Consensus 86 ~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~ 165 (407)
..++.++|+++|.+++++|++||++++|++.. +++ ..|+++| |+||||+||+||+|+++|+|||+.|+|||+++
T Consensus 355 ~~~~s~a~~~aL~~~a~~d~~vv~ita~m~g~---~gl-~~f~~~f-P~R~fdvGIAEq~~vg~AaGLA~~G~kPvv~~- 428 (677)
T PLN02582 355 TQSYTTYFAEALIAEAEVDKDVVAIHAAMGGG---TGL-NLFARRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI- 428 (677)
T ss_pred CcCHHHHHHHHHHHHHccCCCEEEEeCCCCCc---cch-HHHHHHc-CccccccCcCHHHHHHHHHHHHHCCCeEEEEe-
Confidence 35799999999999999999999999998743 343 6899999 99999999999999999999999999999997
Q ss_pred chhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec-CCCCCCCCcCccchHH-HHHccCCCcEEEeeCCHHHHHHHHHH
Q 015415 166 NMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGVGRQLGAEHSQRLE-SYFQSIPGIQMVACSTPYNAKGLMKA 243 (407)
Q Consensus 166 ~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~~~~~G~tHsq~~e-a~~~~iPgl~V~~P~d~~e~~~~~~~ 243 (407)
|+.|++|+||||++++|++ ++||+++++ +|.++.+|+|||+.+| ++||++|||+|++|+|++|++.++++
T Consensus 429 fs~Fl~RA~DQI~~dval~--------~lpVv~v~~~aG~vg~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~ 500 (677)
T PLN02582 429 YSSFLQRGYDQVVHDVDLQ--------KLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELFHMVAT 500 (677)
T ss_pred cHHHHHHHHHHHHHHHHhc--------CCCEEEEEECCCcccCCCCcccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 8899999999999999987 899999985 6888899999988887 89999999999999999999999999
Q ss_pred HHhc-CCCEEEeeccccccCCCCCCCc--cccccCCceEEeecCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecc
Q 015415 244 AIRS-ENPVILFEHVLLYNLKERIPDE--EYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRS 320 (407)
Q Consensus 244 a~~~-~~Pv~ir~~r~~y~~~~~v~~~--~~~~~~Gk~~vl~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~ 320 (407)
|++. ++|+|||++|.... ...++++ ++.+++|+++++++|.|++||++|+|++.|++|++.|+++||+++|||++|
T Consensus 501 al~~~~gPv~IR~pr~~~~-~~~~~~~~~~~~~~iGk~~vlr~G~dvtIva~G~~v~~Al~Aa~~L~~~GI~~~VId~~~ 579 (677)
T PLN02582 501 AAAIDDRPSCFRYPRGNGI-GVQLPPNNKGIPIEVGKGRILLEGERVALLGYGTAVQSCLAAASLLERHGLSATVADARF 579 (677)
T ss_pred HHhCCCCCEEEEEecCCCC-CcccCCcccccccccCceEEEEeCCCEEEEeecHHHHHHHHHHHHHHhcCCCEEEEEcCc
Confidence 9975 59999999986411 1112221 346789999999999999999999999999999999999999999999999
Q ss_pred cccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCH--HHHHHHcCCCHHHH
Q 015415 321 LKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYA--GTLEEWTVVQPAQI 398 (407)
Q Consensus 321 l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~--~~l~~~~gl~~~~I 398 (407)
|+|||++.|.+.+++++.|||+|||.. ||||++|++++.+++......++.++|++|.|++++ ++|.+++|+|++.|
T Consensus 580 lkPlD~~~i~~~~k~~~~vVtvEe~~~-GG~Gs~va~~l~~~~~~~~~~~v~~~Gi~d~F~~~G~~~~L~~~~GL~~e~I 658 (677)
T PLN02582 580 CKPLDRALIRSLAKSHEVLITVEEGSI-GGFGSHVAQFMALDGLLDGKLKWRPLVLPDRYIDHGAPADQLAEAGLTPSHI 658 (677)
T ss_pred CCCCCHHHHHHHhhhCCEEEEECCCCC-CcHHHHHHHHHHhcCCccCCceeEEecCCCcccCcCCHHHHHHHhCcCHHHH
Confidence 999999999888888888999999997 999999999999875211125789999999999874 78999999999999
Q ss_pred HHHHHHHh
Q 015415 399 VTAVEQLC 406 (407)
Q Consensus 399 ~~~i~~ll 406 (407)
+++|++++
T Consensus 659 ~~~i~~~l 666 (677)
T PLN02582 659 AATVLNVL 666 (677)
T ss_pred HHHHHHHH
Confidence 99999876
No 13
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=2.8e-59 Score=500.25 Aligned_cols=305 Identities=21% Similarity=0.254 Sum_probs=273.8
Q ss_pred cchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEEec
Q 015415 86 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGM 165 (407)
Q Consensus 86 ~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~ 165 (407)
..+|+++|+++|.+++++||+|+++++|+..+++ ++.|+++| |+||||+||+|++|+++|+|||+.|+|||+++
T Consensus 318 ~~~~~~~f~~~L~~la~~d~~iv~isadl~~~~~----~~~f~~~~-p~R~id~GIaE~~mvg~AaGlA~~G~~P~v~~- 391 (641)
T PRK12571 318 APSYTSVFGEELTKEAAEDSDIVAITAAMPLGTG----LDKLQKRF-PNRVFDVGIAEQHAVTFAAGLAAAGLKPFCAV- 391 (641)
T ss_pred chhHHHHHHHHHHHHHhhCCCEEEEeCCccCCCC----hHHHHHhC-CCcccccCccHHHHHHHHHHHHHCCCEEEEEe-
Confidence 3579999999999999999999999999975333 38899999 99999999999999999999999999999998
Q ss_pred chhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCCCCcCccchHH-HHHccCCCcEEEeeCCHHHHHHHHHH
Q 015415 166 NMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQLGAEHSQRLE-SYFQSIPGIQMVACSTPYNAKGLMKA 243 (407)
Q Consensus 166 ~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~~G~tHsq~~e-a~~~~iPgl~V~~P~d~~e~~~~~~~ 243 (407)
|+.|++|+||||++++|++ ++||++++ +.|.+|.+|+|||+.++ ++||++|||+|++|+|++|++.++++
T Consensus 392 f~~Fl~ra~dQI~~~~a~~--------~lpv~~v~~~~G~~g~dG~THq~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~ 463 (641)
T PRK12571 392 YSTFLQRGYDQLLHDVALQ--------NLPVRFVLDRAGLVGADGATHAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRT 463 (641)
T ss_pred hHHHHHHHHHHHHHHHhhc--------CCCeEEEEECCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 7789999999999999987 89999998 57777899999977777 99999999999999999999999999
Q ss_pred HHhc-CCCEEEeeccccccCCCCCCCccccccCCceEEeecCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccc
Q 015415 244 AIRS-ENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLK 322 (407)
Q Consensus 244 a~~~-~~Pv~ir~~r~~y~~~~~v~~~~~~~~~Gk~~vl~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~ 322 (407)
|++. ++|+|||++|..+.. ..++++++.+++||+.++++|+|++||++|+|++.|++|++.|+++||+++|||+++|+
T Consensus 464 a~~~~~~P~~ir~~r~~~~~-~~~~~~~~~~~~gk~~vlr~G~ditIva~G~~v~~aleAa~~L~~~Gi~v~VId~~~lk 542 (641)
T PRK12571 464 AAAHDDGPIAVRFPRGEGVG-VEIPAEGTILGIGKGRVPREGPDVAILSVGAHLHECLDAADLLEAEGISVTVADPRFVK 542 (641)
T ss_pred HHhCCCCcEEEEEecCcCCc-cccCCCCccccCceeEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEcCcCC
Confidence 9995 899999999875431 12333445678999999999999999999999999999999999999999999999999
Q ss_pred cCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCH--HHHHHHcCCCHHHHHH
Q 015415 323 PFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYA--GTLEEWTVVQPAQIVT 400 (407)
Q Consensus 323 Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~--~~l~~~~gl~~~~I~~ 400 (407)
|||++.|.+.+ ++++++|+||+...||||++|++++.++++..+..|+.++|++|.|++++ +++.+++|+|+++|++
T Consensus 543 PlD~~~i~sv~-k~~~vvvveE~~~~gG~g~~v~~~l~~~~~~~l~~~v~~ig~~d~f~~~g~~~el~~~~gl~~~~I~~ 621 (641)
T PRK12571 543 PLDEALTDLLV-RHHIVVIVEEQGAMGGFGAHVLHHLADTGLLDGGLKLRTLGLPDRFIDHASREEMYAEAGLTAPDIAA 621 (641)
T ss_pred CcCHHHHHHHh-hhCCEEEEECCCCCCCHHHHHHHHHHhcCccccCCCeEEEecCCcCCCCCCHHHHHHHhCcCHHHHHH
Confidence 99999986544 56689999999999999999999999987544567999999999999874 6788899999999999
Q ss_pred HHHHHh
Q 015415 401 AVEQLC 406 (407)
Q Consensus 401 ~i~~ll 406 (407)
+|++++
T Consensus 622 ~i~~~l 627 (641)
T PRK12571 622 AVTGAL 627 (641)
T ss_pred HHHHHH
Confidence 999886
No 14
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=2e-58 Score=489.37 Aligned_cols=299 Identities=19% Similarity=0.230 Sum_probs=268.3
Q ss_pred cchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEEec
Q 015415 86 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGM 165 (407)
Q Consensus 86 ~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~ 165 (407)
..+++++|+++|.+++++|++++++++|++..+ ++ +.|.++| |+||||+||+||+|+++|+|||+.|+|||+. +
T Consensus 277 ~~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~~~---~~-~~f~~~f-P~R~id~GIaEq~~v~~AaGlA~~G~~Pvv~-~ 350 (581)
T PRK12315 277 GESYSSVTLDYLLKKIKEGKPVVAINAAIPGVF---GL-KEFRKKY-PDQYVDVGIAEQESVAFASGIAANGARPVIF-V 350 (581)
T ss_pred CcCHHHHHHHHHHHHhccCCCEEEEeCcccccc---Cc-HHHHHhc-cccccCCCchHHHHHHHHHHHHHCcCeEEEE-e
Confidence 467999999999999999999999999986533 33 8899999 9999999999999999999999999999996 6
Q ss_pred chhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec-CCCCCCCCcCccchHH-HHHccCCCcEEEeeCCHHHHHHHHHH
Q 015415 166 NMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGVGRQLGAEHSQRLE-SYFQSIPGIQMVACSTPYNAKGLMKA 243 (407)
Q Consensus 166 ~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~~~~~G~tHsq~~e-a~~~~iPgl~V~~P~d~~e~~~~~~~ 243 (407)
|+.|++|+||||++++|++ ++||+++++ +|.++ +|+|||+.+| ++||++|||+|++|+|+.|++.++++
T Consensus 351 fs~Fl~ra~dQi~~d~a~~--------~lpv~~~~~~~g~~~-dG~TH~~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~ 421 (581)
T PRK12315 351 NSTFLQRAYDQLSHDLAIN--------NNPAVMIVFGGSISG-NDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEW 421 (581)
T ss_pred eHHHHHHHHHHHHHHHHhc--------CCCEEEEEECCcccC-CCccccccHHHHHHhcCCCCEEEecCCHHHHHHHHHH
Confidence 8889999999999999997 899999986 56666 9999977776 99999999999999999999999999
Q ss_pred HHhc-CCCEEEeeccccccCCCCCCCccccccCCceEEeecCCcEEEEEechhHHHHHHHHHHHhhC-CCCceEEEeccc
Q 015415 244 AIRS-ENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNK-GYDPEVIDIRSL 321 (407)
Q Consensus 244 a~~~-~~Pv~ir~~r~~y~~~~~v~~~~~~~~~Gk~~vl~eG~dv~Iia~G~~~~~al~Aa~~L~~~-Gi~v~VI~~~~l 321 (407)
|++. ++|+|||++|..++.... .+..+..++++++++|.|++||++|+|++.|++|++.|+++ ||+++|||++||
T Consensus 422 a~~~~~gP~~ir~~r~~~~~~~~---~~~~~~~~k~~v~~~g~dvtiia~G~~v~~Al~Aa~~L~~~~gi~~~Vid~~~i 498 (581)
T PRK12315 422 ALTQHEHPVAIRVPEHGVESGPT---VDTDYSTLKYEVTKAGEKVAILALGDFYELGEKVAKKLKEELGIDATLINPKFI 498 (581)
T ss_pred HHhCCCCcEEEEEcCCccCCCCC---CccCcccceEEEEecCCCEEEEEEchHHHHHHHHHHHHhhhcCCCEEEEecCcC
Confidence 9986 799999999986643221 11234456899999999999999999999999999999999 999999999999
Q ss_pred ccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCH--HHHHHHcCCCHHHHH
Q 015415 322 KPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYA--GTLEEWTVVQPAQIV 399 (407)
Q Consensus 322 ~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~--~~l~~~~gl~~~~I~ 399 (407)
+|||++.+.++.++++.|||+|||+..||||++|++++.+. ..++.++|++|.|++++ ++|++++|+|+++|+
T Consensus 499 kPlD~~~i~~~~~~~~~vvtvEe~~~~GG~gs~v~~~l~~~-----~~~~~~~gi~d~f~~~g~~~~l~~~~Gl~~~~I~ 573 (581)
T PRK12315 499 TGLDEELLEKLKEDHELVVTLEDGILDGGFGEKIARYYGNS-----DMKVLNYGAKKEFNDRVPVEELYKRNHLTPEQIV 573 (581)
T ss_pred CCCCHHHHHHHHhhCCEEEEEcCCCcCCCHHHHHHHHHHcC-----CCeEEEecCCCCCCCCCCHHHHHHHHCcCHHHHH
Confidence 99999999888888889999999999999999999999875 24789999999999874 689999999999999
Q ss_pred HHHHHHhC
Q 015415 400 TAVEQLCQ 407 (407)
Q Consensus 400 ~~i~~ll~ 407 (407)
++|++++.
T Consensus 574 ~~i~~~l~ 581 (581)
T PRK12315 574 EDILSVLK 581 (581)
T ss_pred HHHHHHhC
Confidence 99998863
No 15
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=2.1e-57 Score=482.76 Aligned_cols=297 Identities=22% Similarity=0.292 Sum_probs=269.3
Q ss_pred chHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEEecc
Q 015415 87 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMN 166 (407)
Q Consensus 87 ~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~~ 166 (407)
.+||++|+++|.+++++||+++++++|+..++ ++ ..|+++| |+||||+||+||+|+++|+|||+.|++||++| +
T Consensus 279 ~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~---~~-~~f~~~~-p~R~i~~GIaE~~mvg~A~GlA~~G~~p~~~~-f 352 (580)
T PRK05444 279 PSYTKVFGETLCELAEKDPKIVAITAAMPEGT---GL-VKFSKRF-PDRYFDVGIAEQHAVTFAAGLATEGLKPVVAI-Y 352 (580)
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEEECCcCCCC---CH-HHHHHHh-hhhccCCChHHHHHHHHHHHHHHCCCeeEEEe-e
Confidence 67999999999999999999999999986433 22 5699999 99999999999999999999999999999998 6
Q ss_pred hhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec-CCCCCCCCcCccchHH-HHHccCCCcEEEeeCCHHHHHHHHHHH
Q 015415 167 MGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGVGRQLGAEHSQRLE-SYFQSIPGIQMVACSTPYNAKGLMKAA 244 (407)
Q Consensus 167 ~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~~~~~G~tHsq~~e-a~~~~iPgl~V~~P~d~~e~~~~~~~a 244 (407)
..|++|++|||++++|++ ++||+++++ +|..+.+|+|||+..+ ++||++|||+|++|+|++|++.++++|
T Consensus 353 ~~F~~ra~dQi~~~~a~~--------~~pv~~v~~~~G~~g~dG~tH~~~edia~lr~iP~l~V~~Psd~~e~~~~l~~a 424 (580)
T PRK05444 353 STFLQRAYDQVIHDVALQ--------NLPVTFAIDRAGLVGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTA 424 (580)
T ss_pred HHHHHHHHHHHHHHhhhc--------CCCEEEEEeCCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 788899999999999987 899999985 6777789999977776 999999999999999999999999999
Q ss_pred Hhc-CCCEEEeeccccccCCCCCCCccccccCCceEEeecCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEeccccc
Q 015415 245 IRS-ENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKP 323 (407)
Q Consensus 245 ~~~-~~Pv~ir~~r~~y~~~~~v~~~~~~~~~Gk~~vl~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~P 323 (407)
++. ++|+|||++|..++.. . .++.+.+++|+++++++|+|++||++|+|++.|++|++.|+ +++|||++|++|
T Consensus 425 ~~~~~~P~~ir~~r~~~~~~-~-~~~~~~~~~Gk~~vl~~G~dvtIia~G~~v~~al~Aa~~L~----~~~VId~~~i~p 498 (580)
T PRK05444 425 LAYDDGPIAIRYPRGNGVGV-E-LPELEPLPIGKGEVLREGEDVAILAFGTMLAEALKAAERLA----SATVVDARFVKP 498 (580)
T ss_pred HhCCCCcEEEEecCCCCCCC-C-CCCcccccCCceEEEEcCCCEEEEEccHHHHHHHHHHHHhC----CCEEEEeCcCCc
Confidence 976 8999999999765321 1 12256788999999999999999999999999999999996 899999999999
Q ss_pred CchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCH--HHHHHHcCCCHHHHHHH
Q 015415 324 FDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYA--GTLEEWTVVQPAQIVTA 401 (407)
Q Consensus 324 fd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~--~~l~~~~gl~~~~I~~~ 401 (407)
||++.|.+++++++++|++|||+..||||++|++++.++++ +.|+.++|++|.|++++ ++|++++|+|+++|+++
T Consensus 499 ~D~~~i~~~~~~~~~vv~vEe~~~~gG~g~~va~~l~~~~~---~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~~ 575 (580)
T PRK05444 499 LDEELLLELAAKHDLVVTVEEGAIMGGFGSAVLEFLADHGL---DVPVLNLGLPDEFIDHGSREELLAELGLDAEGIARR 575 (580)
T ss_pred cCHHHHHHHHhcCCeEEEEECCCCCCCHHHHHHHHHHhhcC---CCCEEEEecCCcCCCCCCHHHHHHHHCcCHHHHHHH
Confidence 99999999999999999999999999999999999998753 56899999999999875 67999999999999999
Q ss_pred HHHHh
Q 015415 402 VEQLC 406 (407)
Q Consensus 402 i~~ll 406 (407)
|++++
T Consensus 576 i~~~~ 580 (580)
T PRK05444 576 ILELL 580 (580)
T ss_pred HHhhC
Confidence 99864
No 16
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=3.1e-55 Score=464.15 Aligned_cols=272 Identities=20% Similarity=0.283 Sum_probs=240.6
Q ss_pred cchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEEec
Q 015415 86 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGM 165 (407)
Q Consensus 86 ~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~ 165 (407)
..+++++|+++|.+++++||+|+++++|++. |+. ++.|+++| |+||||+||+||+|+|+|+|||++|+|||+++
T Consensus 356 ~~sy~~af~~aL~e~a~~D~~Iv~l~adm~g--gt~--~~~f~~~f-PdR~fdvGIAEq~~Vg~AaGLA~~G~rPvv~~- 429 (641)
T PLN02234 356 TQSYTSCFVEALIAEAEADKDIVAIHAAMGG--GTM--LNLFESRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCTI- 429 (641)
T ss_pred CCCHHHHHHHHHHHHHHHCcCEEEEECCCCC--Ccc--hHHHHHHc-cccccCCCcCHHHHHHHHHHHHHCCCeEEEEe-
Confidence 3689999999999999999999999999974 332 47899999 99999999999999999999999999999997
Q ss_pred chhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCCCCcCccchHH-HHHccCCCcEEEeeCCHHHHHHHHHH
Q 015415 166 NMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQLGAEHSQRLE-SYFQSIPGIQMVACSTPYNAKGLMKA 243 (407)
Q Consensus 166 ~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~~G~tHsq~~e-a~~~~iPgl~V~~P~d~~e~~~~~~~ 243 (407)
|+.|++|+||||++++|++ ++||++++ +.|..+.+|+|||+.+| +++|++|||+|++|+|+.|++.++++
T Consensus 430 fs~Fl~RA~DQI~~dva~~--------~lpV~~v~~~aG~~g~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~ 501 (641)
T PLN02234 430 YSSFMQRAYDQVVHDVDLQ--------KLPVRFAIDRAGLMGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFNMVAT 501 (641)
T ss_pred hHHHHHHHHHHHHHHHhhc--------CCCEEEEEeCCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 7889999999999999987 89999998 56777889999988888 89999999999999999999999999
Q ss_pred HHhc-CCCEEEeeccccccCCCCCCC--ccccccCCceEEeecCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecc
Q 015415 244 AIRS-ENPVILFEHVLLYNLKERIPD--EEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRS 320 (407)
Q Consensus 244 a~~~-~~Pv~ir~~r~~y~~~~~v~~--~~~~~~~Gk~~vl~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~ 320 (407)
|+.. ++|+|||++|..+... .++. ..+.+++||++++++|+|++||++|+|++.|++|++.|+++||+++|||+++
T Consensus 502 a~~~~~~Pv~ir~~R~~~~~~-~~~~~~~~~~~~iGk~~vlreG~dvtIva~G~~v~~Al~AA~~L~~~GI~v~VId~rs 580 (641)
T PLN02234 502 AAAIDDRPSCFRYHRGNGIGV-SLPPGNKGVPLQIGRGRILRDGERVALLGYGSAVQRCLEAASMLSERGLKITVADARF 580 (641)
T ss_pred HHhCCCCCEEEEeeccccccc-ccCCCCccccccCceEEEEEeCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 8865 5899999999765311 1221 1346789999999999999999999999999999999999999999999999
Q ss_pred cccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEE
Q 015415 321 LKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVC 373 (407)
Q Consensus 321 l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ 373 (407)
++|||++.|.+.+++++.|||+|||.. ||||++|++++.+++......|+.+
T Consensus 581 ikPlD~~~i~sl~k~~~~vVt~Ee~~~-GG~Gs~Va~~l~e~~~~~~~~~~~~ 632 (641)
T PLN02234 581 CKPLDVALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGKLKVYR 632 (641)
T ss_pred cCCCCHHHHHHHHHhCCEEEEECCCCC-CcHHHHHHHHHHHcCCCCCCceEEE
Confidence 999999999888888888999999987 9999999999999874222334444
No 17
>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1.2e-53 Score=393.12 Aligned_cols=321 Identities=34% Similarity=0.605 Sum_probs=300.3
Q ss_pred cccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEE
Q 015415 84 GHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVE 163 (407)
Q Consensus 84 ~~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~ 163 (407)
.+++.+-++++++|.-.++.||+-+++++|++ .+|+|..+-+|+++||-+|+||+|++||.++|+.+|+|..|.+.+.+
T Consensus 38 ~~~mnl~qsvn~al~ial~tdp~a~vfgedv~-fggvfrct~gl~~kfgk~rvfntplceqgivgfgig~aa~g~~aiae 116 (362)
T KOG0525|consen 38 KKKMNLYQSVNQALHIALETDPRAVVFGEDVA-FGGVFRCTTGLAEKFGKDRVFNTPLCEQGIVGFGIGLAAMGATAIAE 116 (362)
T ss_pred cccchHHHHHHHHHHHHhhcCCceEEeccccc-cceEEEeecchHHHhCccccccCchhhcccceechhhhhcccceEEE
Confidence 35677889999999999999999999999997 58999999999999999999999999999999999999999999999
Q ss_pred ecchhHHHHHHHHHHHhhhhhchhcCCccccc-EEEEecCCCCCCCCcCccchHHHHHccCCCcEEEeeCCHHHHHHHHH
Q 015415 164 GMNMGFLLLAFNQISNNCGMLHYTSGGQFTIP-IVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMK 242 (407)
Q Consensus 164 t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lp-vvi~~~~G~~~~~G~tHsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~ 242 (407)
+++.+++..+||||.|.+++.+|+||.|+++. +.++.+.|.+|..+-.|||+.|++|.+.||++|+.|.+|.|+++++.
T Consensus 117 iqfadyifpafdqivneaakfryrsgnqfncg~ltir~p~gavghg~~yhsqspeaff~h~pgikvviprsp~qakglll 196 (362)
T KOG0525|consen 117 IQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPWGAVGHGALYHSQSPEAFFCHVPGIKVVIPRSPRQAKGLLL 196 (362)
T ss_pred EeeccccchhHHHHHHHHHhheeccCCccccCceEEeccccccccccccccCCchhheecCCCceEEecCCcchhhceee
Confidence 99999999999999999999999999999995 77888899988888999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEeeccccccC-CCCCCCccccccCCceEEeecCCcEEEEEechhHHHHHHHHHHHh-hCCCCceEEEecc
Q 015415 243 AAIRSENPVILFEHVLLYNL-KERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLV-NKGYDPEVIDIRS 320 (407)
Q Consensus 243 ~a~~~~~Pv~ir~~r~~y~~-~~~v~~~~~~~~~Gk~~vl~eG~dv~Iia~G~~~~~al~Aa~~L~-~~Gi~v~VI~~~~ 320 (407)
.++++++|+++++++.+|+. ..++|.++|.+|++.++++|+|+|+|+++||..++.++|++..-+ +.|++++|||+++
T Consensus 197 scirdpnp~iffepk~lyr~a~edvp~~dy~iplsqaevireg~ditlv~wgtqvh~i~e~a~l~~ek~giscevidlkt 276 (362)
T KOG0525|consen 197 SCIRDPNPCIFFEPKILYRQAVEDVPEGDYMIPLSQAEVIREGSDITLVAWGTQVHVIMEQACLAKEKLGISCEVIDLKT 276 (362)
T ss_pred eeccCCCceEEechHHHHHHhhhhCCCCCccccccHHHHhhcCCceEEEEcchhhHHHHHHHHhhHHhcCCceEEEeeec
Confidence 99999999999999999984 456888999999999999999999999999999999999887554 4599999999999
Q ss_pred cccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCHHHHHHHcCCCHHHHHH
Q 015415 321 LKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVT 400 (407)
Q Consensus 321 l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~gl~~~~I~~ 400 (407)
|-|||++++.++++||+++++-.|...+||+|++|+..+.+++|..+.+|+-|++.-|.+.|+ ..|-.|.++...|.+
T Consensus 277 i~pwd~d~v~~sv~ktgrllisheapvtggfgaeiastv~ercfl~leapisrvcg~dtpfp~--vfepfy~ptk~ki~d 354 (362)
T KOG0525|consen 277 IIPWDKDTVEESVQKTGRLLISHEAPVTGGFGAEIASTVQERCFLNLEAPISRVCGLDTPFPH--VFEPFYMPTKNKILD 354 (362)
T ss_pred ccCccHHHHHHHHHhhceEEEeccCCccCcchHHHHHHHHHHHHhhccCchhhhccCCCCCcc--cccccccCcHhHHHH
Confidence 999999999999999999999999999999999999999999988889999999999988876 345567899999999
Q ss_pred HHHHHhC
Q 015415 401 AVEQLCQ 407 (407)
Q Consensus 401 ~i~~ll~ 407 (407)
+|++.++
T Consensus 355 aik~~vn 361 (362)
T KOG0525|consen 355 AIKKTVN 361 (362)
T ss_pred HHHHhcc
Confidence 9998653
No 18
>PRK05899 transketolase; Reviewed
Probab=100.00 E-value=7.7e-49 Score=420.46 Aligned_cols=292 Identities=17% Similarity=0.161 Sum_probs=242.5
Q ss_pred ccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCcccc-chhhh-hhhCCCceEeccchhHHHHHHHHHHHhcC-CeeE
Q 015415 85 HELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKV-TKGLA-DKYGDLRVLDTPIAENSFTGMGIGAAMTG-LRPI 161 (407)
Q Consensus 85 ~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~-~~~~~-~~fgp~R~i~~GIaE~~~vg~A~GlA~~G-~rp~ 161 (407)
+++++|++|+++|.+++++||+++++++|++.+++...+ .+.|. ++| |+||||+||+|++|+++|+|||+.| ++||
T Consensus 317 ~~~~~~~a~~~~l~~l~~~~~~v~vl~~D~~~~~~~~~~~~~~f~~~~~-p~R~~d~GIaE~~~vg~A~GlA~~G~~~pv 395 (624)
T PRK05899 317 EKVATRKASGKALNALAKALPELVGGSADLAGSNNTKIKGSKDFAPEDY-SGRYIHYGVREFAMAAIANGLALHGGFIPF 395 (624)
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeCCCccccCcccccccccCccCC-CCCeeeeChhHHHHHHHHHHHHHcCCCeEE
Confidence 567889999999999999999999999999754432111 12222 477 8999999999999999999999999 9999
Q ss_pred EEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCC-CCCCCcCccchHH--HHHccCCCcEEEeeCCHHHH
Q 015415 162 VEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGV-GRQLGAEHSQRLE--SYFQSIPGIQMVACSTPYNA 237 (407)
Q Consensus 162 ~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~-~~~~G~tHsq~~e--a~~~~iPgl~V~~P~d~~e~ 237 (407)
++| |..|+.|+++||++. +++ ++||++++ ++|. .+.+|+|| |++| ++|+++|||+|++|+|++|+
T Consensus 396 ~~t-~~~F~~r~~~qir~~-~~~--------~~pv~~v~~~~G~~~g~~G~tH-q~~edia~~r~iP~~~V~~P~d~~e~ 464 (624)
T PRK05899 396 GGT-FLVFSDYARNAIRLA-ALM--------KLPVIYVFTHDSIGVGEDGPTH-QPVEQLASLRAIPNLTVIRPADANET 464 (624)
T ss_pred EEE-cHHHHHHHHHHHHHH-Hhc--------CCCEEEEEECCCcCcCCCCCCc-ccHHHHHHHHhCCCcEEEeCCCHHHH
Confidence 997 556679999999985 776 79999997 5676 47799999 7776 89999999999999999999
Q ss_pred HHHHHHHHhc-CCCEEEeeccccccCCCCCCCc--cccccCCceEEeecCCcEEEEEechhHHHHHHHHHHHhhCCCCce
Q 015415 238 KGLMKAAIRS-ENPVILFEHVLLYNLKERIPDE--EYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPE 314 (407)
Q Consensus 238 ~~~~~~a~~~-~~Pv~ir~~r~~y~~~~~v~~~--~~~~~~Gk~~vl~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~ 314 (407)
+.+++++++. ++|+|||++|...+ .++++ .+.++.|+ +++++|.|++||++|+|+++|++|++.|+++||+++
T Consensus 465 ~~~l~~a~~~~~~P~~ir~~r~~~~---~~~~~~~~~~~~~G~-~~l~~G~dvtiia~G~~v~~al~Aa~~L~~~gi~~~ 540 (624)
T PRK05899 465 AAAWKYALERKDGPSALVLTRQNLP---VLERTAQEEGVAKGG-YVLRDDPDVILIATGSEVHLALEAADELEAEGIKVR 540 (624)
T ss_pred HHHHHHHHHcCCCCEEEEEeCCCCC---CcCCccccccccCCc-EEEecCCCEEEEEeCHHHHHHHHHHHHHHhcCCcEE
Confidence 9999999998 89999999875432 22222 25678886 889999999999999999999999999999999999
Q ss_pred EEEecccccCchhh---HHHHH-hcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCH--HHHH
Q 015415 315 VIDIRSLKPFDLYT---IGNSI-KKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYA--GTLE 388 (407)
Q Consensus 315 VI~~~~l~Pfd~~~---l~~~~-~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~--~~l~ 388 (407)
|||++||+|||++. +...+ .....++++|++.. +|| ..+ +..++.++|++| |+.++ ++|.
T Consensus 541 VId~~sikPlD~~e~h~~~~~lg~~~~~~v~~e~~~~-~g~----~~~--------~~~~~~~iGv~~-f~~~g~~~~l~ 606 (624)
T PRK05899 541 VVSMPSTELFDEQDAAYKESVLPAAVTARVAVEAGVA-DGW----YKY--------VGLDGKVLGIDT-FGASAPADELF 606 (624)
T ss_pred EEECCCcchhccCcHHHHhccccccccceEEEccCCc-cch----hhh--------cCCCceEEECCC-CCCCCCHHHHH
Confidence 99999999999983 44445 33456788887765 665 222 234678999999 98874 7899
Q ss_pred HHcCCCHHHHHHHHHHHh
Q 015415 389 EWTVVQPAQIVTAVEQLC 406 (407)
Q Consensus 389 ~~~gl~~~~I~~~i~~ll 406 (407)
+++|+|+++|+++|++++
T Consensus 607 ~~~gl~~~~I~~~i~~~~ 624 (624)
T PRK05899 607 KEFGFTVENIVAAAKELL 624 (624)
T ss_pred HHhCCCHHHHHHHHHHhC
Confidence 999999999999999874
No 19
>PRK12753 transketolase; Reviewed
Probab=100.00 E-value=2e-48 Score=417.69 Aligned_cols=294 Identities=15% Similarity=0.091 Sum_probs=242.0
Q ss_pred CcccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCc-cccchhhhhhhCCCceEeccchhHHHHHHHHHHHh-cCCee
Q 015415 83 QGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGS-YKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAM-TGLRP 160 (407)
Q Consensus 83 ~~~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~-~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~-~G~rp 160 (407)
..+++++|++++++|.++++++|+++++++|++.++.+ ++-...|.++| |+||||+||+||+|+++|+|||+ .|++|
T Consensus 351 ~~~~~a~r~~~g~~L~~l~~~~p~lv~~sADl~~S~~~~~~~~~~f~~~~-p~r~i~~GIaEq~mv~~aaGlA~~~G~~P 429 (663)
T PRK12753 351 NPAKIATRKASQNTLEAYGPLLPELLGGSADLAPSNLTIWSGSKSLKEDP-AGNYIHYGVREFGMTAIANGIAHHGGFVP 429 (663)
T ss_pred cccccHHHHHHHHHHHHHHhhCCCeEEEccccccccCcccccccchhhcC-CCCEEEeeecHHHHHHHHHHHHHhCCCeE
Confidence 34578999999999999999999999999999876643 22236788899 99999999999999999999999 78999
Q ss_pred EEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCC-CCCCCcCccchHH--HHHccCCCcEEEeeCCHHH
Q 015415 161 IVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGV-GRQLGAEHSQRLE--SYFQSIPGIQMVACSTPYN 236 (407)
Q Consensus 161 ~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~-~~~~G~tHsq~~e--a~~~~iPgl~V~~P~d~~e 236 (407)
|++| |..|++|++||||+. |++ ++||++++ .+|. .|.||+|| |.+| ++||.+|||+|+.|+|++|
T Consensus 430 ~~~t-f~~F~~r~~~qir~~-a~~--------~l~V~~v~thdg~~~G~DG~TH-q~iedla~lR~iPn~~v~~PaD~~E 498 (663)
T PRK12753 430 YTAT-FLMFVEYARNAARMA-ALM--------KARQIMVYTHDSIGLGEDGPTH-QPVEQLASLRLTPNFSTWRPCDQVE 498 (663)
T ss_pred EEEe-hHHHHHHHHHHHHHH-Hhc--------CCCeEEEEeCCCcccCCCCccc-ccHHHHHHHhcCCCCEEEccCCHHH
Confidence 9998 557788999999975 888 89999986 4554 48999999 6665 9999999999999999999
Q ss_pred HHHHHHHHHh-cCCCEEEeeccccccCCCCCCCc---cccccCCceEEeecCC---cEEEEEechhHHHHHHHHHHHhhC
Q 015415 237 AKGLMKAAIR-SENPVILFEHVLLYNLKERIPDE---EYICNLEEAEMVRPGE---HVTILTYSRMRYHVMQAAKTLVNK 309 (407)
Q Consensus 237 ~~~~~~~a~~-~~~Pv~ir~~r~~y~~~~~v~~~---~~~~~~Gk~~vl~eG~---dv~Iia~G~~~~~al~Aa~~L~~~ 309 (407)
+..++++|++ .++|+|||++|...+ .++.. ...+..|+ ++++++. |++||++|+++++|++|++.|+++
T Consensus 499 ~~~~~~~al~~~~gP~~irl~R~~~~---~~~~~~~~~~~~~~G~-~vl~~~~~~~dv~iia~Gs~v~~al~Aa~~L~~~ 574 (663)
T PRK12753 499 AAVAWKLAIERHNGPTALILSRQNLA---QQERTPEQVKNIARGG-YILKDSGGKPDLILIATGSEVEITLQAAEKLTAE 574 (663)
T ss_pred HHHHHHHHHhcCCCCEEEEecCCCCC---CCCCcccchhhccCCc-EEEeccCCCCCEEEEEeCHHHHHHHHHHHHHHhc
Confidence 9999999998 589999999986422 22222 12355665 8888754 999999999999999999999999
Q ss_pred CCCceEEEecccccCchhhH--HHHHhc--CCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCH-
Q 015415 310 GYDPEVIDIRSLKPFDLYTI--GNSIKK--THRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYA- 384 (407)
Q Consensus 310 Gi~v~VI~~~~l~Pfd~~~l--~~~~~~--~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~- 384 (407)
||+++|||++|++|||++.+ ++.+.. ....|++|+|. +..+.++ ...+..++|+ |.|+.++
T Consensus 575 gi~~~Vv~~~~~kp~d~~~~~y~~~vl~~~~~~~vtvE~~~-----~~~~~~~--------~~~~~~~iGv-d~Fg~sg~ 640 (663)
T PRK12753 575 GRNVRVVSMPSTDIFDAQDEAYRESVLPSNVTARVAVEAGI-----ADYWYKY--------VGLKGAIIGM-TGFGESAP 640 (663)
T ss_pred CCCcEEEECCcCCccchhHHHHHHhhcccccceEEEEccCh-----HHHHHHH--------cCCCCeEEEe-CCCcCcCC
Confidence 99999999999999999976 222111 12349999983 2222222 1346678999 7888874
Q ss_pred -HHHHHHcCCCHHHHHHHHHHHh
Q 015415 385 -GTLEEWTVVQPAQIVTAVEQLC 406 (407)
Q Consensus 385 -~~l~~~~gl~~~~I~~~i~~ll 406 (407)
++|.+++|+|++.|++++++++
T Consensus 641 ~~~l~~~~Glt~~~Iv~~i~~~~ 663 (663)
T PRK12753 641 ADKLFPFFGFTVENIVAKAKKLL 663 (663)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhC
Confidence 7899999999999999999874
No 20
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=100.00 E-value=2.1e-48 Score=417.54 Aligned_cols=294 Identities=15% Similarity=0.094 Sum_probs=246.4
Q ss_pred CcccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccc-cchhhhhhhCCCceEeccchhHHHHHHHHHHHh-cCCee
Q 015415 83 QGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYK-VTKGLADKYGDLRVLDTPIAENSFTGMGIGAAM-TGLRP 160 (407)
Q Consensus 83 ~~~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~-~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~-~G~rp 160 (407)
..++.++|++++++|.++++++|+++++++|+..++.+.. -...|.++| |+||||+||+||+|+++|+|||+ .|++|
T Consensus 345 ~~~~~atR~~~g~~L~~la~~~p~iv~lsaDl~~s~~~~~~~~~~f~~~~-p~rfi~~GIaEq~mv~~AaGlA~~gG~~p 423 (653)
T TIGR00232 345 KLQALATRKYSQNVLNAIANVLPELLGGSADLAPSNLTKWKGSGDLHENP-LGNYIHYGVREFAMGAIMNGIALHGGFKP 423 (653)
T ss_pred cCcchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCcccccccchhhcC-CCCeEeecccHHHHHHHHHHHHHcCCCeE
Confidence 3456789999999999999999999999999987665411 011278899 99999999999999999999999 68999
Q ss_pred EEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec-CCC-CCCCCcCccchHH--HHHccCCCcEEEeeCCHHH
Q 015415 161 IVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGV-GRQLGAEHSQRLE--SYFQSIPGIQMVACSTPYN 236 (407)
Q Consensus 161 ~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~-~~~~G~tHsq~~e--a~~~~iPgl~V~~P~d~~e 236 (407)
|++| |..|++|+++|||+. |++ ++||++++. +|. .|.+|+|| |++| ++||++|||+|+.|+|+.|
T Consensus 424 ~~~t-f~~F~~r~~~~ir~~-a~~--------~lpV~~v~th~g~~~G~dG~TH-q~iedia~lr~iPn~~v~~PaD~~E 492 (653)
T TIGR00232 424 YGGT-FLMFVDYARPAIRLA-ALM--------KLPVIYVYTHDSIGVGEDGPTH-QPIEQLASLRAIPNLSVWRPCDGNE 492 (653)
T ss_pred EEEE-hHHHHHHHHHHHHHH-Hhc--------CCCEEEEEeCCccCCCCCCccc-CCHHHHHHHhcCCCCEEEeeCCHHH
Confidence 9998 557788999999976 887 799999984 444 58899999 7775 8999999999999999999
Q ss_pred HHHHHHHHH-hcCCCEEEeeccccccCCCCCCCcc-ccccCCceEEe--ecCCcEEEEEechhHHHHHHHHHHHhhCCCC
Q 015415 237 AKGLMKAAI-RSENPVILFEHVLLYNLKERIPDEE-YICNLEEAEMV--RPGEHVTILTYSRMRYHVMQAAKTLVNKGYD 312 (407)
Q Consensus 237 ~~~~~~~a~-~~~~Pv~ir~~r~~y~~~~~v~~~~-~~~~~Gk~~vl--~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~ 312 (407)
+..++++++ +.++|+|||++|..++. +++.+ ..+..|+ +++ ++|.|++||++|+|+.+|++|++.|+++||+
T Consensus 493 ~~~~~~~a~~~~~gP~~irl~r~~~~~---~~~~~~~~~~~G~-~vl~~~~g~dv~iia~G~~v~~al~Aa~~L~~~Gi~ 568 (653)
T TIGR00232 493 TAAAWKYALESQDGPTALILSRQNLPQ---LEESSLEKVLKGG-YVLKDSKGPDIILIATGSEVSLAVEAAKKLAAENIK 568 (653)
T ss_pred HHHHHHHHHhcCCCcEEEEEcCCccCC---CCcccccccCCCc-EEEEecCCCCEEEEEeChHHHHHHHHHHHHHhcCCc
Confidence 999999999 56899999999875432 22222 4566776 667 6799999999999999999999999999999
Q ss_pred ceEEEecccccCchhh---HHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCH--HHH
Q 015415 313 PEVIDIRSLKPFDLYT---IGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYA--GTL 387 (407)
Q Consensus 313 v~VI~~~~l~Pfd~~~---l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~--~~l 387 (407)
++|||++|++|||++. +.+.+++++.+|++|||+. +||. ..+ .....++|+ |.|+.++ ++|
T Consensus 569 ~~VI~~~~ikpld~~~~~~~~~~~~~~~~vvtvEe~~~-~g~~----~~~--------~~~~~~igv-d~fg~sg~~~~L 634 (653)
T TIGR00232 569 VRVVSMPSFDLFDKQDEEYRESVLPANVTRLAVEAGAA-DEWY----KYA--------GLVGAILGM-DSFGESAPGDKL 634 (653)
T ss_pred EEEEecccCcccccCCHHHHHHHhcccCceEEEecccH-hHHH----Hhc--------CCcceEEEe-cCCcCCCCHHHH
Confidence 9999999999998765 7778888888999999986 4442 111 111257888 8898874 789
Q ss_pred HHHcCCCHHHHHHHHHHHh
Q 015415 388 EEWTVVQPAQIVTAVEQLC 406 (407)
Q Consensus 388 ~~~~gl~~~~I~~~i~~ll 406 (407)
.+++|+|++.|+++|++++
T Consensus 635 ~~~~Glt~e~I~~~i~~~~ 653 (653)
T TIGR00232 635 FEEFGFTVENVVAKAKKLL 653 (653)
T ss_pred HHHhCCCHHHHHHHHHHhC
Confidence 9999999999999999874
No 21
>PLN02790 transketolase
Probab=100.00 E-value=2.4e-47 Score=409.54 Aligned_cols=293 Identities=14% Similarity=0.093 Sum_probs=246.0
Q ss_pred cccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCcc-ccchhhhhh-hCCCceEeccchhHHHHHHHHHHHhc--CCe
Q 015415 84 GHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSY-KVTKGLADK-YGDLRVLDTPIAENSFTGMGIGAAMT--GLR 159 (407)
Q Consensus 84 ~~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~-~~~~~~~~~-fgp~R~i~~GIaE~~~vg~A~GlA~~--G~r 159 (407)
.+.+++|++++++|.++.+.+|+++++++|+..++.++ .-+..|+++ | |+||||+||+||+|+++|+|||+. |++
T Consensus 341 ~~~~a~R~~~~~~l~~i~~~~p~iv~gsaDl~~s~~t~~~~~~~f~~~~~-p~Rfi~~GIaEq~mv~~AaGlA~~G~G~~ 419 (654)
T PLN02790 341 DPADATRNLSQKCLNALAKVLPGLIGGSADLASSNMTLLKDFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSSGLI 419 (654)
T ss_pred CcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccccccccchhhhhcCC-CCCeEEeeechHHHHHHHHHHHhcCCCcE
Confidence 44578999999999999999999999999998766542 113678888 6 999999999999999999999996 699
Q ss_pred eEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec-CC-CCCCCCcCccchHH--HHHccCCCcEEEeeCCHH
Q 015415 160 PIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GG-VGRQLGAEHSQRLE--SYFQSIPGIQMVACSTPY 235 (407)
Q Consensus 160 p~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G-~~~~~G~tHsq~~e--a~~~~iPgl~V~~P~d~~ 235 (407)
||++|+. .|+.|+++|||+. |++ ++||++++. .| ..|.||+|| |.+| ++||.+|||+|++|+|++
T Consensus 420 P~~~tf~-~F~~~~~~~ir~~-al~--------~lpV~~v~thdg~~~G~DG~TH-q~iedla~lR~iPnl~V~~PaD~~ 488 (654)
T PLN02790 420 PYCATFF-VFTDYMRAAMRLS-ALS--------EAGVIYVMTHDSIGLGEDGPTH-QPIEHLASLRAMPNILMLRPADGN 488 (654)
T ss_pred EEEEecH-HHHHHHHHHHHHH-Hhc--------CCCeEEEEECCceeecCCCCCc-ccHHHHHHhcCCCCcEEEeCCCHH
Confidence 9999855 5667999999875 888 899999983 34 358999999 6664 999999999999999999
Q ss_pred HHHHHHHHHHh-cCCCEEEeeccccccCCCCCCCc-cccccCCceEEeecC-----CcEEEEEechhHHHHHHHHHHHhh
Q 015415 236 NAKGLMKAAIR-SENPVILFEHVLLYNLKERIPDE-EYICNLEEAEMVRPG-----EHVTILTYSRMRYHVMQAAKTLVN 308 (407)
Q Consensus 236 e~~~~~~~a~~-~~~Pv~ir~~r~~y~~~~~v~~~-~~~~~~Gk~~vl~eG-----~dv~Iia~G~~~~~al~Aa~~L~~ 308 (407)
|+..+++++++ .++|+|||++|...+ .++.+ ...++.|+ ++++++ .|++||++|+|+++|++|++.|++
T Consensus 489 E~~~~l~~al~~~~gP~~irl~R~~~~---~~~~~~~~~~~~G~-~vl~~~~~~~~~dv~iia~G~~v~~Al~Aa~~L~~ 564 (654)
T PLN02790 489 ETAGAYKVAVTNRKRPTVLALSRQKVP---NLPGTSIEGVEKGG-YVISDNSSGNKPDLILIGTGSELEIAAKAAKELRK 564 (654)
T ss_pred HHHHHHHHHHHcCCCCEEEEecCCCCC---CCCCCcccccccCc-EEEEeCCCCCCCCEEEEEcCHHHHHHHHHHHHHHh
Confidence 99999999997 579999999986432 22222 24567887 666663 799999999999999999999999
Q ss_pred CCCCceEEEecccccCchhhHH---HHH-hcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCH
Q 015415 309 KGYDPEVIDIRSLKPFDLYTIG---NSI-KKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYA 384 (407)
Q Consensus 309 ~Gi~v~VI~~~~l~Pfd~~~l~---~~~-~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~ 384 (407)
+||+++|||++|++|||++.+. +.+ ++++.+|++|||.. +||++ ++ ..+..++|+ |.|+.++
T Consensus 565 ~gi~~~VV~~~~ikpld~~~~~y~~~~~~~~~~~vvtiE~~~~-~G~~~----~~--------~~~~~~igv-d~Fg~sg 630 (654)
T PLN02790 565 EGKKVRVVSMVCWELFEEQSDEYKESVLPSSVTARVSVEAGST-FGWEK----YV--------GSKGKVIGV-DRFGASA 630 (654)
T ss_pred cCCceEEEecCccchhhhhHHHHHHhhhccccceEEEecCccc-hhHHH----hc--------CCCceEEEe-CCCcCcC
Confidence 9999999999999999998754 566 66778999999986 77653 11 234468899 8998874
Q ss_pred --HHHHHHcCCCHHHHHHHHHHHh
Q 015415 385 --GTLEEWTVVQPAQIVTAVEQLC 406 (407)
Q Consensus 385 --~~l~~~~gl~~~~I~~~i~~ll 406 (407)
++|.+++|+|++.|+++|++++
T Consensus 631 ~~~~l~~~~Glt~e~I~~~i~~~~ 654 (654)
T PLN02790 631 PAGILYKEFGFTVENVVAAAKSLL 654 (654)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHhC
Confidence 7899999999999999998875
No 22
>PTZ00089 transketolase; Provisional
Probab=100.00 E-value=1.8e-47 Score=410.83 Aligned_cols=291 Identities=15% Similarity=0.138 Sum_probs=241.4
Q ss_pred CcccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCcc-ccchhhhhhhCC-CceEeccchhHHHHHHHHHHHh-cCCe
Q 015415 83 QGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSY-KVTKGLADKYGD-LRVLDTPIAENSFTGMGIGAAM-TGLR 159 (407)
Q Consensus 83 ~~~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~-~~~~~~~~~fgp-~R~i~~GIaE~~~vg~A~GlA~-~G~r 159 (407)
..+..++|++++++|.++.+.+|+++++++|+..++.+. +-...|+++| | +||||+||+||+|+++|+|||+ .|++
T Consensus 351 ~~~~~a~R~~~g~~L~~la~~~~~~~~~saDl~~s~~~~~~~~~~f~~~~-P~~rfi~~GIaEq~mv~~AaGlA~~~G~~ 429 (661)
T PTZ00089 351 NDKAIATRKASENVLNPLFQILPELIGGSADLTPSNLTRPKEANDFTKAS-PEGRYIRFGVREHAMCAIMNGIAAHGGFI 429 (661)
T ss_pred cCcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccCcCCcccccccccC-CCCCeeeeeecHHHHHHHHHHHHHcCCCe
Confidence 345678999999999999999999999999998765421 0113688889 8 8999999999999999999999 7999
Q ss_pred eEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCC-CCCCCCcCccchHH--HHHccCCCcEEEeeCCHH
Q 015415 160 PIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGG-VGRQLGAEHSQRLE--SYFQSIPGIQMVACSTPY 235 (407)
Q Consensus 160 p~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G-~~~~~G~tHsq~~e--a~~~~iPgl~V~~P~d~~ 235 (407)
||++| |+.|++|+||||++. |++ ++||++++ ..| .+|.+|+|| |.+| ++||.+|||+|+.|+|++
T Consensus 430 P~~~t-f~~Fl~Ra~dqir~~-al~--------~lpV~~v~thdg~~~g~DG~TH-q~iedia~lR~iPn~~V~~PaD~~ 498 (661)
T PTZ00089 430 PFGAT-FLNFYGYALGAVRLA-ALS--------HHPVIYVATHDSIGLGEDGPTH-QPVETLALLRATPNLLVIRPADGT 498 (661)
T ss_pred EEEEe-hHHHHHHHHHHHHHH-Hhc--------CCCeEEEEeCCceecCCCCCCc-ccHHHHHHHhcCCCcEEEecCCHH
Confidence 99997 668899999999765 988 89999997 344 358999999 6664 999999999999999999
Q ss_pred HHHHHHHHHHh-cCCCEEEeeccccccCCCCCCCccccccCCceEEeecC---CcEEEEEechhHHHHHHHHHHHhhCCC
Q 015415 236 NAKGLMKAAIR-SENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPG---EHVTILTYSRMRYHVMQAAKTLVNKGY 311 (407)
Q Consensus 236 e~~~~~~~a~~-~~~Pv~ir~~r~~y~~~~~v~~~~~~~~~Gk~~vl~eG---~dv~Iia~G~~~~~al~Aa~~L~~~Gi 311 (407)
|+..++++|++ .++|+|||++|...+ .++..+..+..+++++++++ .|++||++|+++.+|++|++.|++ ||
T Consensus 499 E~~~~l~~al~~~~gP~~irl~R~~~~---~~~~~~~~~~~~g~~vl~~~~~~~dv~iia~G~~v~~Al~Aa~~L~~-Gi 574 (661)
T PTZ00089 499 ETSGAYALALANAKTPTILCLSRQNTP---PLPGSSIEGVLKGAYIVVDFTNSPQLILVASGSEVSLCVEAAKALSK-EL 574 (661)
T ss_pred HHHHHHHHHHHcCCCCEEEEecCCCCC---CcCCCccccccCceEEEeccCCCCCEEEEeeCHHHHHHHHHHHHHhc-CC
Confidence 99999999995 579999999986422 23333334445667889874 799999999999999999999999 99
Q ss_pred CceEEEecccccCchhhHHHH---Hh-cCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCH--H
Q 015415 312 DPEVIDIRSLKPFDLYTIGNS---IK-KTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYA--G 385 (407)
Q Consensus 312 ~v~VI~~~~l~Pfd~~~l~~~---~~-~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~--~ 385 (407)
+++|||++|++|||++.+... +. +...++++|+|... ||. . ....++|++| |+.++ +
T Consensus 575 ~~~Vv~~~~ikp~d~~~~~~~~~v~~e~~~~~vtiE~~~~~-g~~--------~-------~~~~~igv~~-Fg~sg~~~ 637 (661)
T PTZ00089 575 NVRVVSMPCWELFDQQSEEYQQSVLPSGGVPVLSVEAYVSF-GWE--------K-------YSHVHVGISG-FGASAPAN 637 (661)
T ss_pred CeEEEeCCCccHHHHHHHHHHHHhcCCCCCceEeHHhhHHH-HHH--------h-------cCCeEEECCC-ccccCCHH
Confidence 999999999999999976533 33 44568999999864 321 1 0125799998 88874 7
Q ss_pred HHHHHcCCCHHHHHHHHHHHh
Q 015415 386 TLEEWTVVQPAQIVTAVEQLC 406 (407)
Q Consensus 386 ~l~~~~gl~~~~I~~~i~~ll 406 (407)
+|.+++|+|++.|+++|++++
T Consensus 638 ~l~~~~Gl~~e~I~~~i~~~l 658 (661)
T PTZ00089 638 ALYKHFGFTVENVVEKARALA 658 (661)
T ss_pred HHHHHhCCCHHHHHHHHHHHh
Confidence 899999999999999999876
No 23
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.7e-47 Score=388.59 Aligned_cols=302 Identities=20% Similarity=0.223 Sum_probs=251.7
Q ss_pred cccC-cccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCC
Q 015415 80 ASKQ-GHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGL 158 (407)
Q Consensus 80 ~~~~-~~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~ 158 (407)
+++. ++.+++|+++.++|.++.+.+|+++.+++|+..++. ++-|.++| |+|||++||+||+|+++|+|+|..|.
T Consensus 312 ~yk~~Dk~~Atrk~~~~aL~~l~~~~~~vI~~~ad~~~st~----td~~~~~~-p~R~i~~giaEq~mv~ia~G~a~~g~ 386 (632)
T KOG0523|consen 312 TYKVGDKAVATRKAFGEALAALAEADPRVIGGSADLKNSTL----TDFFPKRF-PERFIECGIAEQNMVGIANGIACRGR 386 (632)
T ss_pred ccccCChhhhHHHHHHHHHHHHhhcCcCeEEEecccCCCch----hhhccccC-ccceEEEeeehhhhHHhhhchhcCCC
Confidence 3454 444999999999999999999999999999997654 36777899 99999999999999999999999998
Q ss_pred -eeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-c-CCCCCCCCcCccchHH--HHHccCCCcEEEeeCC
Q 015415 159 -RPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-P-GGVGRQLGAEHSQRLE--SYFQSIPGIQMVACST 233 (407)
Q Consensus 159 -rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~-~G~~~~~G~tHsq~~e--a~~~~iPgl~V~~P~d 233 (407)
+||+.| |..|++|||||+|+++-. +.+++.++ . ++..|.||||| |.+| ++||++||++|+.|+|
T Consensus 387 ~~Pf~~t-f~~F~trA~dqvr~~a~s---------~~~v~~v~th~~i~~GeDGPth-~~iedlA~frsiPn~~v~~PaD 455 (632)
T KOG0523|consen 387 TIPFCGT-FAAFFTRAFDQVRMGALS---------QANVIYVATHDSIGLGEDGPTH-QPIEDLAMFRSIPNMIVFRPAD 455 (632)
T ss_pred ccchhHH-HHHHHHHhhhheeehhhc---------cCCcEEEEEeccccccCCCccc-ccHHHHHHHHhCCCceEEecCc
Confidence 999997 668899999999987543 34555544 4 45569999999 6665 9999999999999999
Q ss_pred HHHHHHHHHHHHhcCC-CEEEeeccccccCCCCCCCccccccCCceE-EeecCC-cEEEEEechhHHHHHHHHHHHhhCC
Q 015415 234 PYNAKGLMKAAIRSEN-PVILFEHVLLYNLKERIPDEEYICNLEEAE-MVRPGE-HVTILTYSRMRYHVMQAAKTLVNKG 310 (407)
Q Consensus 234 ~~e~~~~~~~a~~~~~-Pv~ir~~r~~y~~~~~v~~~~~~~~~Gk~~-vl~eG~-dv~Iia~G~~~~~al~Aa~~L~~~G 310 (407)
..|+..++..|++.++ |.+++.+|... ...+....+.+|++. +++++. |++||++|+++++|++|++.|+++|
T Consensus 456 ~~et~~av~~Aa~~~~~p~i~~~~r~~~----~~~~~~~~~~igkg~~vl~~~~~dV~LiG~Gs~v~~cl~AA~~L~~~g 531 (632)
T KOG0523|consen 456 GNETENAVATAANTKGTPSIRTLSRQNL----PIYNNTEIEEIGKGKYVLQEVEPDVILIGTGSEVQECLEAAELLSEDG 531 (632)
T ss_pred hHHHHHHHHHHHhcCCCeeEEEecCccc----cccCCCchhhhccccEEEecCCCCEEEEeccHHHHHHHHHHHHHHhcC
Confidence 9999999999998755 99998777532 222333346778877 667775 9999999999999999999999999
Q ss_pred CCceEEEecccccCchhhHHHHHhcC-CcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCH--HHH
Q 015415 311 YDPEVIDIRSLKPFDLYTIGNSIKKT-HRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYA--GTL 387 (407)
Q Consensus 311 i~v~VI~~~~l~Pfd~~~l~~~~~~~-~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~--~~l 387 (407)
|+++|+|++++||||...|+++.+.+ .++.|+|+|+..||++..+...+... -...+..+++ |.|+.++ .++
T Consensus 532 i~vrVvd~~~~kplD~~li~~~~q~~e~ri~v~ed~~~~gsi~~~~~a~~g~~----~~~~~~~~~~-~~~~~sG~p~el 606 (632)
T KOG0523|consen 532 IKVRVVDPFTWKPLDVALIRSLAQSHEYRISVLEDHVPAGSIEVAVTAAWGKY----PGILVPSLGV-DTFGRSGPPPEL 606 (632)
T ss_pred ceEEEecccceeecchHHhhhhhcccceeEEEccCCCCCcchhheeeehhccc----CCccceeecc-ccCCcCCCCHHH
Confidence 99999999999999999999988887 47888888988788887777666442 1223456666 6777764 789
Q ss_pred HHHcCCCHHHHHHHHHHHh
Q 015415 388 EEWTVVQPAQIVTAVEQLC 406 (407)
Q Consensus 388 ~~~~gl~~~~I~~~i~~ll 406 (407)
.+.+|++++.|+++++.++
T Consensus 607 l~~fGit~~~Ia~~a~~~~ 625 (632)
T KOG0523|consen 607 LKMFGITARHIAAAALSLI 625 (632)
T ss_pred HHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999876
No 24
>PRK12754 transketolase; Reviewed
Probab=100.00 E-value=4.1e-46 Score=398.16 Aligned_cols=292 Identities=14% Similarity=0.093 Sum_probs=238.0
Q ss_pred ccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCc-cccchhhhhhhCCCceEeccchhHHHHHHHHHHHh-cCCeeEE
Q 015415 85 HELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGS-YKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAM-TGLRPIV 162 (407)
Q Consensus 85 ~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~-~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~-~G~rp~~ 162 (407)
+.+++|++++++|.++++.+|+++++++|+..++.+ ++-...|.++| |+||||+||+||+|+++|+|||+ .|++||+
T Consensus 353 ~~~atR~~~~~~L~~la~~~~~lv~~sADl~~s~~~~~~~~~~f~~~~-p~r~i~~GIaE~~Mv~iaaGlA~~~G~~Pf~ 431 (663)
T PRK12754 353 AKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDA-AGNYIHYGVREFGMTAIANGIALHGGFLPYT 431 (663)
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeCCcccccCccccccccccccC-CCCeEeeccchhhHHHHHhhHHhcCCCeEEE
Confidence 467899999999999999999999999999876653 12236788889 99999999999999999999999 6899999
Q ss_pred EecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec-CCC-CCCCCcCccchHH--HHHccCCCcEEEeeCCHHHHH
Q 015415 163 EGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGV-GRQLGAEHSQRLE--SYFQSIPGIQMVACSTPYNAK 238 (407)
Q Consensus 163 ~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~-~~~~G~tHsq~~e--a~~~~iPgl~V~~P~d~~e~~ 238 (407)
+|++ .|+.|++||||+. |++ ++||++++. +|. .|.+|+|| |++| ++||.+|||+|+.|+|+.|+.
T Consensus 432 ~tf~-~F~~r~~~qir~~-a~~--------~l~V~~v~th~gi~~G~DG~TH-q~iEdla~lR~iPn~~V~~PaD~~E~~ 500 (663)
T PRK12754 432 STFL-MFVEYARNAVRMA-ALM--------KQRQVMVYTHDSIGLGEDGPTH-QPVEQVASLRVTPNMSTWRPCDQVESA 500 (663)
T ss_pred EeeH-HHHHHHHHHHHHH-HHc--------CCCeEEEEECCccccCCCCCCc-ccHHHHHHHhcCCCcEEecCCCHHHHH
Confidence 9855 6788999999986 888 899999884 554 48999999 7776 999999999999999999999
Q ss_pred HHHHHHHhc-CCCEEEeeccccccCCCCCCC--c-cccccCCceEEeecCC---cEEEEEechhHHHHHHHHHHHhhCCC
Q 015415 239 GLMKAAIRS-ENPVILFEHVLLYNLKERIPD--E-EYICNLEEAEMVRPGE---HVTILTYSRMRYHVMQAAKTLVNKGY 311 (407)
Q Consensus 239 ~~~~~a~~~-~~Pv~ir~~r~~y~~~~~v~~--~-~~~~~~Gk~~vl~eG~---dv~Iia~G~~~~~al~Aa~~L~~~Gi 311 (407)
.+++++++. ++|+|||++|...+ .++. + ...+..|+ ++++++. |++||++|+++++|++|++.|+++||
T Consensus 501 ~~~~~a~~~~~gP~yirl~R~~~p---~~~~~~~~~~~~~~G~-~vl~~~~~~~dv~iiatGs~v~~Al~Aa~~L~~~Gi 576 (663)
T PRK12754 501 VAWKYGVERQDGPTALILSRQNLA---QQERTEEQLANIARGG-YVLKDCAGQPELIFIATGSEVELAVAAYEKLTAEGV 576 (663)
T ss_pred HHHHHHHhCCCCCEEEEeCCCCCC---CCCCccchhhhcccCc-EEEEecCCCCCEEEEEECHHHHHHHHHHHHHHhhCC
Confidence 999999987 79999999986432 2221 1 13455665 7888764 99999999999999999999999999
Q ss_pred CceEEEecccccCchhh--HHHH-HhcC-CcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCC--HH
Q 015415 312 DPEVIDIRSLKPFDLYT--IGNS-IKKT-HRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPY--AG 385 (407)
Q Consensus 312 ~v~VI~~~~l~Pfd~~~--l~~~-~~~~-~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~--~~ 385 (407)
+++|||++|++|||++. -++. +... ...|++|... ..||. .++..+ .+ .||+ |.|+.+ ++
T Consensus 577 ~~~Vvs~~s~kp~d~q~~~y~~~il~~~~~~~v~iE~~~-~~~w~----~~~~~~------~~--~igi-~~FG~Sg~~~ 642 (663)
T PRK12754 577 KARVVSMPSTDAFDKQDAAYRESVLPKAVSARVAVEAGI-ADYWY----KYVGLN------GA--IVGM-TTFGESAPAE 642 (663)
T ss_pred CcEEEEcCccCcCCCCCHHHHHhcCccccccceEeeccc-ccchh----hhccCC------CC--EEEe-CCCCCCCCHH
Confidence 99999999999999973 2222 2222 2348899964 34443 333221 22 3787 678776 47
Q ss_pred HHHHHcCCCHHHHHHHHHHHh
Q 015415 386 TLEEWTVVQPAQIVTAVEQLC 406 (407)
Q Consensus 386 ~l~~~~gl~~~~I~~~i~~ll 406 (407)
+|.+++|+|++.|++++++++
T Consensus 643 ~l~~~~G~t~e~I~~~~~~~~ 663 (663)
T PRK12754 643 LLFEEFGFTVDNVVAKAKALL 663 (663)
T ss_pred HHHHHhCCCHHHHHHHHHHhC
Confidence 899999999999999999875
No 25
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=100.00 E-value=6.2e-44 Score=386.11 Aligned_cols=304 Identities=14% Similarity=0.081 Sum_probs=256.9
Q ss_pred cccchHHHHHHHHHHHHhhh---CCCEEEEeCCCCCCCCcc---------------------ccchhhhhhhCCCceEec
Q 015415 84 GHELLLFEALREGLEEEMDR---DPHVCVMGEDVGHYGGSY---------------------KVTKGLADKYGDLRVLDT 139 (407)
Q Consensus 84 ~~~~~~r~a~~~~L~~l~~~---d~~vvvi~aDl~~~~g~~---------------------~~~~~~~~~fgp~R~i~~ 139 (407)
.+++++|.||+.+|.+|++. +++||.+.+|+..++|.- .....|+++| |+||||+
T Consensus 492 ~~~~sT~~Afgr~L~~L~~~~~~~~riV~i~pD~a~t~g~~~~f~~~gi~~~~gq~y~~~d~~~~~~yke~~-PgRf~e~ 570 (891)
T PRK09405 492 EREISTTMAFVRILNILLKDKEIGKRIVPIIPDEARTFGMEGLFRQIGIYNPHGQLYTPVDRDQLMYYKESK-DGQILQE 570 (891)
T ss_pred CCcccHHHHHHHHHHHHHhccccCCcEEEeccccccccCcchhhccccccccccccccccccHHHHHHHHcC-CCcEEEe
Confidence 47799999999999999996 899999999998766551 1124677899 9999999
Q ss_pred cchhHHHHH--HHHHHHhc----CCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec-CCCC-CCCCcC
Q 015415 140 PIAENSFTG--MGIGAAMT----GLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGVG-RQLGAE 211 (407)
Q Consensus 140 GIaE~~~vg--~A~GlA~~----G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~~-~~~G~t 211 (407)
||+||+|++ +|+|+|++ |++||+.++++|.++|++|||+++++++ +.++++.+. +|.+ ++.|.|
T Consensus 571 GIAEqnmv~~~vAAGlA~a~~G~g~iPF~~tya~F~~~Ra~Dqir~a~~~~--------~~~v~iggt~gg~tl~~eG~q 642 (891)
T PRK09405 571 GINEAGAMASWIAAATSYSTHGEPMIPFYIYYSMFGFQRIGDLAWAAGDQR--------ARGFLLGGTAGRTTLNGEGLQ 642 (891)
T ss_pred chhhhHHHHHHHHHHHhhhhcCCCceEEEEehHHhhhhhHHHHHHHHHHhc--------CCCeEEEEECccccCCCCccc
Confidence 999999999 99999999 8899999876665899999999999987 789998885 5544 789999
Q ss_pred ccchHH--HHHccCCCcEEEeeCCHHHHHHHHHHHHh----cCC--CEEEeeccccccCCCCCCCccccccCCce-EEee
Q 015415 212 HSQRLE--SYFQSIPGIQMVACSTPYNAKGLMKAAIR----SEN--PVILFEHVLLYNLKERIPDEEYICNLEEA-EMVR 282 (407)
Q Consensus 212 Hsq~~e--a~~~~iPgl~V~~P~d~~e~~~~~~~a~~----~~~--Pv~ir~~r~~y~~~~~v~~~~~~~~~Gk~-~vl~ 282 (407)
| |+.+ .+++.+||++|+.|+|+.|+..+++++++ ..+ |+|++.....+.. +..+ +++.+.+||+ ++++
T Consensus 643 H-qdg~s~~l~raiPn~tv~~PADa~E~a~iv~~~l~rm~~~~~~~~yYlrl~ne~~~~-~~~p-e~~~~~igKg~y~Lr 719 (891)
T PRK09405 643 H-EDGHSHILASTIPNCVSYDPAFAYEVAVIVQDGLRRMYGEQENVFYYITVMNENYHQ-PAMP-EGAEEGILKGMYKLE 719 (891)
T ss_pred C-CchhhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCC-CCCC-cccccccceEEEEec
Confidence 9 6554 79999999999999999999999999876 444 7778754211111 1111 3456788996 9999
Q ss_pred cCC------cEEEEEechhHHHHHHHHHHHhh-CCCCceEEEecccccCchhhHHHHH---------hcCCcEEEEecCc
Q 015415 283 PGE------HVTILTYSRMRYHVMQAAKTLVN-KGYDPEVIDIRSLKPFDLYTIGNSI---------KKTHRVLIVEECM 346 (407)
Q Consensus 283 eG~------dv~Iia~G~~~~~al~Aa~~L~~-~Gi~v~VI~~~~l~Pfd~~~l~~~~---------~~~~~vvvvEe~~ 346 (407)
+|. |++|+++|.|+++|++|++.|++ +||+++|||++|+||||++.+.... ++++.|+++|+|
T Consensus 720 ~g~~~~~~~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~Visv~SikpLdrd~i~~~~~~~l~~~~~~~~~~V~t~ee~- 798 (891)
T PRK09405 720 TAEGKKGKPKVQLLGSGTILREVLEAAEILAEDYGVAADVWSVTSFNELARDGQDVERWNMLHPTEEPRVPYVTQVLKG- 798 (891)
T ss_pred cCCCCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhhHHHHHHHHHhhcCcccccccchhhhhhcc-
Confidence 876 89999999999999999999998 7999999999999999999987766 567788889998
Q ss_pred cccchH-------HHHHHHHHhccccCCCCCeEEeecCCCCCCCH--HHHHHHcCCCHHHHHHHHHHHh
Q 015415 347 RTGGIG-------ASLTAAITENFHDYLDAPIVCLSSQDVPTPYA--GTLEEWTVVQPAQIVTAVEQLC 406 (407)
Q Consensus 347 ~~GGlG-------s~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~--~~l~~~~gl~~~~I~~~i~~ll 406 (407)
.||++ +.|++.+.+. ++.++.++|+ |.|+.++ ++|+++||+|++.|+++++++|
T Consensus 799 -~gG~~Vtv~D~~~aVae~la~~----~p~~~~~LGv-D~FG~SGt~~~L~~~fglda~~Iv~aal~~L 861 (891)
T PRK09405 799 -AEGPVVAATDYMKLFAEQIRAF----VPGDYVVLGT-DGFGRSDTREALRRFFEVDAEYVVVAALKAL 861 (891)
T ss_pred -cCCcEEEecchHHHHHHHHHHh----CCCCEEEEec-CCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 57888 8999999775 3578999999 8898774 7899999999999999999876
No 26
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=100.00 E-value=5e-44 Score=386.74 Aligned_cols=304 Identities=17% Similarity=0.130 Sum_probs=257.6
Q ss_pred cccchHHHHHHHHHHHHhhh---CCCEEEEeCCCCCCCCc---------cc------------cchhhhhhhCCCceEec
Q 015415 84 GHELLLFEALREGLEEEMDR---DPHVCVMGEDVGHYGGS---------YK------------VTKGLADKYGDLRVLDT 139 (407)
Q Consensus 84 ~~~~~~r~a~~~~L~~l~~~---d~~vvvi~aDl~~~~g~---------~~------------~~~~~~~~fgp~R~i~~ 139 (407)
.++++++.||+..|.+|++. .++||.+.+|+..++|. |. ....+++.+ |+||||+
T Consensus 487 ~~~~sT~~Af~r~l~~L~~~~~~~~riV~i~pD~a~t~gm~~~f~~~gi~~~~gq~y~~~d~~~~~~y~e~~-p~R~ie~ 565 (889)
T TIGR03186 487 GKEMSTTMAIVRMLGALLKDAELGPRIVPIVADEARTFGMANLFRQVGIYSPLGQRYEPEDLGSMLYYREDT-DGQILEE 565 (889)
T ss_pred CCcccHHHHHHHHHHHHHhCccccCCEEEeCCcccccCCchhhhccccccCcccccCCccchHHHHHHhhcC-CCcEEEe
Confidence 47799999999997777664 58899999999876522 11 123566788 9999999
Q ss_pred cchhHHHHH--HHHHHHhc----CCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCC--CCCCCc
Q 015415 140 PIAENSFTG--MGIGAAMT----GLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGV--GRQLGA 210 (407)
Q Consensus 140 GIaE~~~vg--~A~GlA~~----G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~--~~~~G~ 210 (407)
||+||+|++ +|+|+|++ |++||+.++++|..+|++|||+++ |++ +.++++++ .+|. .+++|+
T Consensus 566 GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~tya~F~~~Ra~Dqir~a-~~~--------~a~v~lvG~~aG~tTlg~eG~ 636 (889)
T TIGR03186 566 GISEAGAISSWIAAATSYSVHDLPMLPFYIYYSMFGFQRIGDLIWAA-ADQ--------RARGFLIGATSGKTTLGGEGL 636 (889)
T ss_pred chhhHHHHHHHHHHHHhhhhcCCCceEEEEehHHhHhhhHHHHHHHH-hhc--------CCCcEEEEECCCccCCCCCcc
Confidence 999999999 99999999 889999986666579999999988 877 78888887 5676 478999
Q ss_pred CccchHH--HHHccCCCcEEEeeCCHHHHHHHHHHHHh------cCCCEEEeeccccccCCCCCCCcc-ccccCCc--e-
Q 015415 211 EHSQRLE--SYFQSIPGIQMVACSTPYNAKGLMKAAIR------SENPVILFEHVLLYNLKERIPDEE-YICNLEE--A- 278 (407)
Q Consensus 211 tHsq~~e--a~~~~iPgl~V~~P~d~~e~~~~~~~a~~------~~~Pv~ir~~r~~y~~~~~v~~~~-~~~~~Gk--~- 278 (407)
|| |+.| ++++.+||++|+.|+|+.|+..+++++++ .++|+|||+.+..+.. +.+++++ ..++.|+ +
T Consensus 637 tH-q~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl~r~~~~~-p~~~~~~~~~~~~gi~kg~ 714 (889)
T TIGR03186 637 QH-QDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLTVTNENYAQ-PSLPEDRLDAVRRGILKGM 714 (889)
T ss_pred cc-cchHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCCC-CCcCCCcccchhcchhhee
Confidence 99 7775 89999999999999999999999998777 5689999988765531 2233332 2244554 5
Q ss_pred EEee----cCCcEEEEEechhHHHHHHHHHHHhhC-CCCceEEEecccccCchhhHHHHHhcCCcEEEEecC---ccccc
Q 015415 279 EMVR----PGEHVTILTYSRMRYHVMQAAKTLVNK-GYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEEC---MRTGG 350 (407)
Q Consensus 279 ~vl~----eG~dv~Iia~G~~~~~al~Aa~~L~~~-Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~---~~~GG 350 (407)
++++ +|.|++|+++|.|+++|++|++.|+++ ||+++|||++|+||||++.+. ++++++|+++||| ++.||
T Consensus 715 y~l~~~~~~g~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~V~sv~SikpLdrd~i~--a~r~~~l~t~Eeh~~~~v~gg 792 (889)
T TIGR03186 715 YPLDPAALAAARVQLLGSGAILGEVQAAARLLRDDWGIDAAVWSVTSFTELARDGRA--AERAQRLGDAERPPSPHVAQA 792 (889)
T ss_pred eEeeccCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhHHHHHH--HHHhCCcccccccccccHhhh
Confidence 7787 578999999999999999999999997 999999999999999999986 7889999999998 89999
Q ss_pred hHH-------------HHHHHHHhccccCCCCCeEEeecCCCCCCCH--HHHHHHcCCCHHHHHHHHHHHh
Q 015415 351 IGA-------------SLTAAITENFHDYLDAPIVCLSSQDVPTPYA--GTLEEWTVVQPAQIVTAVEQLC 406 (407)
Q Consensus 351 lGs-------------~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~--~~l~~~~gl~~~~I~~~i~~ll 406 (407)
||+ .+++++.+. .+.++.++|+ |.|+.++ ++|+++|++|++.|+.+++++|
T Consensus 793 Lg~~~~p~va~~D~~~avae~i~~~----~p~~~~~LG~-D~FG~Sgtr~~Lr~~fglda~~Iv~aal~~L 858 (889)
T TIGR03186 793 LGATQGPVIAATDYVRAVPELIRAY----VPRRYVTLGT-DGFGRSDTRAALRAFFEVDRASIVIAALQAL 858 (889)
T ss_pred hCCCCCCeeeecchHHHHHHHHHhh----CCCCEEEecc-CCCCCcCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999 999999875 3678999999 9998874 7899999999999999998876
No 27
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=100.00 E-value=8.1e-41 Score=363.21 Aligned_cols=296 Identities=16% Similarity=0.119 Sum_probs=239.6
Q ss_pred CcccchHHHHHHHHHHHHhhh---CCCEEEEeCCCCCCCCc---------cc------------cchhhhhhhCCCceEe
Q 015415 83 QGHELLLFEALREGLEEEMDR---DPHVCVMGEDVGHYGGS---------YK------------VTKGLADKYGDLRVLD 138 (407)
Q Consensus 83 ~~~~~~~r~a~~~~L~~l~~~---d~~vvvi~aDl~~~~g~---------~~------------~~~~~~~~fgp~R~i~ 138 (407)
..+++++|.+|+.+|.++++. +++||.+++|+..++|. |. .+..|+++| |+|||+
T Consensus 499 ~~~~isTr~Afgr~L~~L~k~~~~~~~iV~i~aDla~t~gm~~~f~~~~i~~~~gq~y~~~d~~~~~~yke~~-pgR~ie 577 (896)
T PRK13012 499 GGKEMSTTMAFVRMLGNLLKDKALGPRIVPIVADEARTFGMANLFRQVGIYSPLGQLYEPEDAGSLLYYREAK-DGQILE 577 (896)
T ss_pred CCCcchHHHHHHHHHHHHHhccccCCCEEEeccccccccCcccccccccccccccccccccchhHHhhhhhCC-CCcEEe
Confidence 346789999999999999988 99999999999855432 11 023566789 999999
Q ss_pred ccchhHHHHH--HHHHHHhc----CCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecC-CC-CCCCCc
Q 015415 139 TPIAENSFTG--MGIGAAMT----GLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPG-GV-GRQLGA 210 (407)
Q Consensus 139 ~GIaE~~~vg--~A~GlA~~----G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~-G~-~~~~G~ 210 (407)
+||+|++|++ +|+|+|++ |++||+.|+++|..+|++||++++++++ ..++++++.. +. .+++|+
T Consensus 578 ~GIaEqnm~~~~~AAG~a~a~~G~g~iPf~~tfs~F~~~R~~Dqir~a~~~~--------~~~vlig~T~gg~tlg~dG~ 649 (896)
T PRK13012 578 EGITEAGAISSWIAAATSYSVHGLPMLPFYIYYSMFGFQRVGDLIWAAADQR--------ARGFLLGATAGRTTLGGEGL 649 (896)
T ss_pred cchhhhhhhHHHHHHHhhHHhcCCCcEEEEEehHHHHHHHHHHHHHHHHhcc--------cCCeEEEEeCcccccCCCCC
Confidence 9999999999 89999888 6799999877666899999999998876 5678888764 43 478999
Q ss_pred CccchHH--HHHccCCCcEEEeeCCHHHHHHHHHHHHhc------CCCEEEeeccccccCCCCCCCc-cccccCCceEEe
Q 015415 211 EHSQRLE--SYFQSIPGIQMVACSTPYNAKGLMKAAIRS------ENPVILFEHVLLYNLKERIPDE-EYICNLEEAEMV 281 (407)
Q Consensus 211 tHsq~~e--a~~~~iPgl~V~~P~d~~e~~~~~~~a~~~------~~Pv~ir~~r~~y~~~~~v~~~-~~~~~~Gk~~vl 281 (407)
|| |+.+ +++|.+||++|+.|+|+.|+..+++.+++. +.|+|||+.+..++. +.++++ +..+..|+ +++
T Consensus 650 TH-Q~~eslal~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~YIrL~r~~~~~-p~~~~~~~~~i~kG~-y~l 726 (896)
T PRK13012 650 QH-QDGHSHLLASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYYLTVMNENYAQ-PALPEGAEEGILKGM-YRL 726 (896)
T ss_pred CC-cchHhHHHHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEEEEecCCCCCC-CCCCccchhccccCc-EEE
Confidence 99 7776 899999999999999999999999988742 579999988876532 223332 34556676 555
Q ss_pred ---ecCCcEEEEEechhHHHHHHHHHHHhhC-CCCceEEEecccccCchhhHHHHHhcCCcEEEEecCccccchH----H
Q 015415 282 ---RPGEHVTILTYSRMRYHVMQAAKTLVNK-GYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIG----A 353 (407)
Q Consensus 282 ---~eG~dv~Iia~G~~~~~al~Aa~~L~~~-Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlG----s 353 (407)
++|.|++||++|+++++|++|++.|+++ ||+++|||++|++|||++.+.. |+|+..||++ +
T Consensus 727 ~~~~~g~dv~LiasGs~v~eAl~AAe~L~~e~GI~a~V~sv~S~kpLd~d~i~~-----------E~hn~~gglg~~~~s 795 (896)
T PRK13012 727 AAAAEAPRVQLLGSGAILREVLAAARLLADDWGVDADVWSVTSFTELRRDGLAA-----------ERANLLGPAEEARVP 795 (896)
T ss_pred eccCCCCCEEEEEecHHHHHHHHHHHHHHhhhCCCeEEEECCCCCHhHHHHHHH-----------HHHhhcCCCcccccc
Confidence 3467999999999999999999999999 9999999999999999997722 5555555555 3
Q ss_pred ---------------------HHHHHHHhccccCCCCCeEEeecCCCCCCCH--HHHHHHcCCCHHHHHHHHHHHh
Q 015415 354 ---------------------SLTAAITENFHDYLDAPIVCLSSQDVPTPYA--GTLEEWTVVQPAQIVTAVEQLC 406 (407)
Q Consensus 354 ---------------------~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~--~~l~~~~gl~~~~I~~~i~~ll 406 (407)
.+++.+.+. .+.++.++|+ |.|+.++ ++|+++||+|++.|+++++++|
T Consensus 796 y~~~~l~~~~~p~Va~~D~~~aVae~l~~~----~~~~~~~LGv-D~FG~Sg~~~~L~~~fGlda~~Iv~aal~~L 866 (896)
T PRK13012 796 YVTQCLAGTRGPVVAATDYVRAVPEQIRAF----VPARYVTLGT-DGFGRSDTRAALRRFFEVDRHSIVLAALKAL 866 (896)
T ss_pred HHHHhhcccCCCeEEecchHHHHHHHHHHh----CCCCeEEEee-CCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 455566543 3568899999 8888764 7899999999999999999876
No 28
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=100.00 E-value=6.4e-41 Score=302.71 Aligned_cols=166 Identities=61% Similarity=1.015 Sum_probs=155.9
Q ss_pred HHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCC-ceEeccchhHHHHHHHHHHHhcCCeeEEEecchhH
Q 015415 91 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDL-RVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGF 169 (407)
Q Consensus 91 ~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~-R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~~~~f 169 (407)
++++++|.+++++||+++++++|++..+|++..+++|+++| |+ ||||+||+|++|+|+|+|||++|++||++++|..|
T Consensus 1 ~~~~~~l~~~~~~~~~vv~l~~D~~~~~g~~~~~~~~~~~~-p~~R~~~~gIaEq~~vg~AaGlA~~G~~pi~~~~~a~F 79 (167)
T cd07036 1 QAINEALDEEMERDPRVVVLGEDVGDYGGVFKVTKGLLDKF-GPDRVIDTPIAEAGIVGLAVGAAMNGLRPIVEIMFADF 79 (167)
T ss_pred CHHHHHHHHHHhcCCCEEEECcccccCCCcchHhHHHHHhC-CCceEEeCCCcHHHHHHHHHHHHHcCCEEEEEeehHHH
Confidence 37899999999999999999999987777777789999999 88 99999999999999999999999999999667888
Q ss_pred HHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCCcCccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCC
Q 015415 170 LLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSEN 249 (407)
Q Consensus 170 ~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G~tHsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~ 249 (407)
++|+||||++++|+++|++|||+++||++++++|.++.+|+||++.++++|+++|||+|++|+|+.|++.+++++++.++
T Consensus 80 l~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~~~~G~ths~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~~~~~~ 159 (167)
T cd07036 80 ALPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQHSQSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIRDDD 159 (167)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCCCCcChhhhhhHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCC
Confidence 89999999999999999999999999999998766778999998888899999999999999999999999999999999
Q ss_pred CEEEeecc
Q 015415 250 PVILFEHV 257 (407)
Q Consensus 250 Pv~ir~~r 257 (407)
|++++++|
T Consensus 160 P~~~~e~k 167 (167)
T cd07036 160 PVIFLEHK 167 (167)
T ss_pred cEEEEecC
Confidence 99999875
No 29
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=2.4e-36 Score=328.83 Aligned_cols=289 Identities=19% Similarity=0.216 Sum_probs=240.4
Q ss_pred ccchHHHHHHHHHHHHhhhCCCEEEEeCCCCC--------------CCCccccchhhhhhhCCCceEeccchhHHHHHHH
Q 015415 85 HELLLFEALREGLEEEMDRDPHVCVMGEDVGH--------------YGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMG 150 (407)
Q Consensus 85 ~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~--------------~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A 150 (407)
+.++|.+|.+.++.++|++|++|+++|+|++. ++|.|+.+++|.++||+.|++|+||+|.+++|++
T Consensus 584 ~~~~~~~A~~~A~~~~l~~~~~V~l~GeDv~rGtFshRHavl~dq~~g~~~~~~~~l~~~~g~~rV~nsplSE~a~~G~~ 663 (929)
T TIGR00239 584 KLFDWGGAENLAFATLVDDGIPVRLSGEDSERGTFFQRHAVLHDQSNGSTYTPLQHLHNGQGAFRVWNSVLSEESVLGFE 663 (929)
T ss_pred CCccHHHHHHHHHHHHHhcCCCEEEEeeeCCCcccccccccccccccCceeecccchhhhcCCeeEEcCCccHHHHHHHH
Confidence 34889999999999999999999999999986 6677799999999999999999999999999999
Q ss_pred HHHHhcCCeeE--EEecchhHHH---HHHHHHHHh-hhhhchhcCCcccccEEEEecCCCCCCCCcCccchHHHHH--cc
Q 015415 151 IGAAMTGLRPI--VEGMNMGFLL---LAFNQISNN-CGMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHSQRLESYF--QS 222 (407)
Q Consensus 151 ~GlA~~G~rp~--~~t~~~~f~~---ra~dqi~~~-~a~~~~~~gg~~~lpvvi~~~~G~~~~~G~tHsq~~ea~~--~~ 222 (407)
+|+|+.|.+|+ ++.++.+|+. .++|||.+. .++++||+| +|++.|.|..|+.+.+||+++|++| .+
T Consensus 664 ~G~a~~g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~~sg------lv~~~p~G~~g~g~~hsS~~~E~~lql~~ 737 (929)
T TIGR00239 664 YGYATTSPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQMSG------LVMLLPHGYEGQGPEHSSGRLERFLQLAA 737 (929)
T ss_pred HhHHhcCCCCceEEEEeccchhcchHHHHHHHHHHHHHHhcCccC------eEEEecCcCCCCCchhhccCHHHHHHHhC
Confidence 99999998775 9999999987 779999888 588887654 8999998865555667788999988 88
Q ss_pred CCCcEEEeeCCHHHHHHHHH-HHHhc-CCCEEEeeccccccCCC------CCCCccccccCCceE-----EeecCCcEEE
Q 015415 223 IPGIQMVACSTPYNAKGLMK-AAIRS-ENPVILFEHVLLYNLKE------RIPDEEYICNLEEAE-----MVRPGEHVTI 289 (407)
Q Consensus 223 iPgl~V~~P~d~~e~~~~~~-~a~~~-~~Pv~ir~~r~~y~~~~------~v~~~~~~~~~Gk~~-----vl~eG~dv~I 289 (407)
.|||+|+.|++|.|++.+++ +|++. ++|++++++|.+|+... +++++.|..+++... +.+++.+.+|
T Consensus 738 ~~gl~Vv~pstpad~~~lLrrqa~r~~~~Pvi~~~~K~L~r~~~a~S~~~e~~~~~f~~~i~~~~~~~~~~~~~~v~~vv 817 (929)
T TIGR00239 738 EQNMQVCVPTTPAQVFHILRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELAEGTFQPVIGEIEESGLSLDPEGVKRLV 817 (929)
T ss_pred CCCCEEEecCCHHHHHHHHHHHHHhCCCCCEEEeccHhhhcCccccCccccCCCCCcccccccccccccccCccCCcEEE
Confidence 99999999999999999999 69996 99999999999997543 566666666665321 1223344445
Q ss_pred EEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCC---cEEEEecCccccchHHHHHHHHHhccccC
Q 015415 290 LTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTH---RVLIVEECMRTGGIGASLTAAITENFHDY 366 (407)
Q Consensus 290 ia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~---~vvvvEe~~~~GGlGs~I~~~l~e~~~~~ 366 (407)
+++| +++.++++ ++++++|++++|||+++|+|||.++|.++++||. ++|+|+|...+.|-...|...|.+.-.
T Consensus 818 ~~sg-~v~~~l~~-~~~~~~~~~v~iirle~L~Pf~~~~i~~sl~k~~~~~~~vw~qEep~n~Gaw~~v~~rl~~~l~-- 893 (929)
T TIGR00239 818 LCSG-KVYYDLHE-QRRKNGQKDVAIVRIEQLYPFPHKAVKEVLQQYPNLKEIVWCQEEPLNMGAWYYSQPHLREVIP-- 893 (929)
T ss_pred EECc-hHHHHHHH-HHHhcCCCCEEEEEeeeeCCCCHHHHHHHHHhcCCCCeEEEEeccCCCCCCHHHHHHHHHHHhc--
Confidence 5554 88888877 6778889999999999999999999999999995 799999998888888888888765310
Q ss_pred CCCCeEEeecCCCCCCC
Q 015415 367 LDAPIVCLSSQDVPTPY 383 (407)
Q Consensus 367 ~~~~v~~ig~~d~~~~~ 383 (407)
...++..+|-+....|.
T Consensus 894 ~~~~l~y~gR~~~aspA 910 (929)
T TIGR00239 894 EGVSVRYAGRPASASPA 910 (929)
T ss_pred cCCceEEeCCCCCCCCC
Confidence 12357788877665554
No 30
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=9.3e-36 Score=325.55 Aligned_cols=288 Identities=18% Similarity=0.222 Sum_probs=241.4
Q ss_pred ccchHHHHHHHHHHHHhhhCCCEEEEeCCCCC--------------CCCccccchhhhhhhCCCceEeccchhHHHHHHH
Q 015415 85 HELLLFEALREGLEEEMDRDPHVCVMGEDVGH--------------YGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMG 150 (407)
Q Consensus 85 ~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~--------------~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A 150 (407)
+.++|..|...++.++|++|++|+++|+|++. .+|.|+.+++|.++||++|++|+||+|.+++|++
T Consensus 582 ~~idw~~Ae~lA~~s~l~~~~~v~l~GeDv~rgtFshRHavl~dq~~gg~~~~~~~l~~~~g~~rV~nsplsE~~~~G~~ 661 (924)
T PRK09404 582 KPIDWGMAEALAFASLLDEGYPVRLSGQDSGRGTFSHRHAVLHDQKTGETYIPLNHLSEGQASFEVYDSPLSEEAVLGFE 661 (924)
T ss_pred CCcCHHHHHHHHHHHHHhCCCCEEEEeeeCCCCcccccchhccccCCCCEeccccchhhhcCCceEecCcchHHHHHHHH
Confidence 44889999999999999999999999999984 7899999999999999999999999999999999
Q ss_pred HHHHhcCCee--EEEecchhHHH---HHHHHHHHhh-hhhchhcCCcccccEEEEecCCCCCCCCcCccchHHHHHccC-
Q 015415 151 IGAAMTGLRP--IVEGMNMGFLL---LAFNQISNNC-GMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSI- 223 (407)
Q Consensus 151 ~GlA~~G~rp--~~~t~~~~f~~---ra~dqi~~~~-a~~~~~~gg~~~lpvvi~~~~G~~~~~G~tHsq~~ea~~~~i- 223 (407)
+|+|+.|.+| +++.++.+|+. .++||+.+.+ +++++|+ ++|++.|.|..|+.+.+||+++|++|...
T Consensus 662 ~G~a~~g~~~l~i~E~qfgDF~~~AQ~~~Dq~i~~~~~k~~~~s------glv~~~p~G~~g~g~~hsS~~~E~~l~~~~ 735 (924)
T PRK09404 662 YGYSTAEPNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRLS------GLVMLLPHGYEGQGPEHSSARLERFLQLCA 735 (924)
T ss_pred HHHHhcCCCCceEEEEeccccccchHHHHHHHHHHHHHHhcCcc------CeEEEecCcCCCCChhhhccCHHHHHHhCC
Confidence 9999999975 99999999987 6799999886 7877664 48999998855555556677999999655
Q ss_pred -CCcEEEeeCCHHHHHHHHHHHH-hc-CCCEEEeeccccccCCC------CCCCccccccCCceEEeecCCcE--EEEEe
Q 015415 224 -PGIQMVACSTPYNAKGLMKAAI-RS-ENPVILFEHVLLYNLKE------RIPDEEYICNLEEAEMVRPGEHV--TILTY 292 (407)
Q Consensus 224 -Pgl~V~~P~d~~e~~~~~~~a~-~~-~~Pv~ir~~r~~y~~~~------~v~~~~~~~~~Gk~~vl~eG~dv--~Iia~ 292 (407)
|||+|+.|++|.|++++++.++ +. ++|++|+++|.+|+... ++++..|..++++.. .++++|+ +||||
T Consensus 736 ~~gl~Vv~pstpad~~~lLr~q~~r~~r~Pvv~~~pK~L~r~~~~~s~~~e~~~~~f~~vi~~~~-~~~~~~v~r~iv~~ 814 (924)
T PRK09404 736 EDNMQVCNPTTPAQYFHLLRRQALRPFRKPLVVMTPKSLLRHPLAVSSLEELAEGSFQPVIGDID-ELDPKKVKRVVLCS 814 (924)
T ss_pred CCCCEEEecCCHHHHHHHHHHHHhhCCCCCEEEeccHHHhCCCCCCCCHHHcCCCCceeeccccc-ccCccceeEEEEEc
Confidence 7999999999999999999864 66 59999999999987432 222233444455544 5677889 79999
Q ss_pred chhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcC---CcEEEEecCccccchHHHHHHHHHhccccCCCC
Q 015415 293 SRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKT---HRVLIVEECMRTGGIGASLTAAITENFHDYLDA 369 (407)
Q Consensus 293 G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~---~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~ 369 (407)
|.+++.+++|++.+.. .+++|||+++|.|||.++|.++++|+ +++|+|+|...+.|.+..|...+.+.-. ...
T Consensus 815 Gk~~~~~~~a~~~~~~--~~v~ii~le~L~P~~~~~i~~~v~k~~~~~~~v~vqEe~~n~G~~~~~~~~~~~~~~--~~~ 890 (924)
T PRK09404 815 GKVYYDLLEARRKRGI--DDVAIVRIEQLYPFPHEELAAELAKYPNAKEVVWCQEEPKNQGAWYFIQHHLEEVLP--EGQ 890 (924)
T ss_pred CHHHHHHHHHHHhCCC--CCEEEEEeeeeCCCCHHHHHHHHHhcCCCCeEEEEeeCCCCCCcHHHHHHHHHHHhc--cCC
Confidence 9999999999986643 39999999999999999999999997 4899999999999999999888865310 123
Q ss_pred CeEEeecCCCCCCC
Q 015415 370 PIVCLSSQDVPTPY 383 (407)
Q Consensus 370 ~v~~ig~~d~~~~~ 383 (407)
++..+|-+....|.
T Consensus 891 ~~~y~gR~~~aspA 904 (924)
T PRK09404 891 KLRYAGRPASASPA 904 (924)
T ss_pred eeEEECCCCcCCCC
Confidence 57788877666554
No 31
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.3e-35 Score=303.41 Aligned_cols=295 Identities=14% Similarity=0.140 Sum_probs=240.7
Q ss_pred cccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCcc-ccchhhh-hhhCCCceEeccchhHHHHHHHHHHHhcC-Cee
Q 015415 84 GHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSY-KVTKGLA-DKYGDLRVLDTPIAENSFTGMGIGAAMTG-LRP 160 (407)
Q Consensus 84 ~~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~-~~~~~~~-~~fgp~R~i~~GIaE~~~vg~A~GlA~~G-~rp 160 (407)
.+.+.+|++.+++|..+.+..|+++..++|+..++.+. +....|. +.| .+|+|..||+|++|.+++.|||++| ++|
T Consensus 351 ~~~~ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~~~~~-~gr~i~~GVREf~M~AimNGialhGg~~p 429 (663)
T COG0021 351 GKSIATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFSPENY-AGRYIHFGVREFAMAAIMNGIALHGGFIP 429 (663)
T ss_pred ccccchHHHHHHHHHHHHhhCccccccCcccccCccccccccCCCCCCCC-CCCeeEEeeHHHHHHHHHHhHHHhcCcee
Confidence 44589999999999999999999999999999877652 3233444 567 8999999999999999999999995 699
Q ss_pred EEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec-CCC-CCCCCcCccchHH--HHHccCCCcEEEeeCCHHH
Q 015415 161 IVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGV-GRQLGAEHSQRLE--SYFQSIPGIQMVACSTPYN 236 (407)
Q Consensus 161 ~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~-~~~~G~tHsq~~e--a~~~~iPgl~V~~P~d~~e 236 (407)
|..||. .|..++..+||+ +|+| ++|++++.. .+. .|+||||| |++| +.+|.+||+.|+.|+|+.|
T Consensus 430 yggTFl-vFsdY~r~AiRl-aALm--------~l~~~~V~THDSIgvGEDGPTH-qPiEqLa~LRaiPN~~V~RPaD~~E 498 (663)
T COG0021 430 YGGTFL-VFSDYARPAVRL-AALM--------GLPVIYVFTHDSIGVGEDGPTH-QPVEQLASLRAIPNLSVIRPADANE 498 (663)
T ss_pred ecceeh-hhHhhhhHHHHH-HHhc--------CCCeEEEEecCceecCCCCCCC-CcHHHHHHhhccCCceeEecCChHH
Confidence 999855 679999999997 5666 899999973 443 58999999 9998 8999999999999999999
Q ss_pred HHHHHHHHHhc-CCCEEEeeccccccCCCCCCCccccccCCceEEeec----CCcEEEEEechhHHHHHHHHHHHhhCCC
Q 015415 237 AKGLMKAAIRS-ENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRP----GEHVTILTYSRMRYHVMQAAKTLVNKGY 311 (407)
Q Consensus 237 ~~~~~~~a~~~-~~Pv~ir~~r~~y~~~~~v~~~~~~~~~Gk~~vl~e----G~dv~Iia~G~~~~~al~Aa~~L~~~Gi 311 (407)
+..+++.|++. ++|+++.++|+..+ .+...+.......++++++ +.|++||++|+.+..|++|++.|+++|+
T Consensus 499 t~~aw~~Al~~~~gPt~LiltRQnlp---~l~~t~~~~~~kGaYvl~~~~~~~pd~iliAtGSEV~lAv~Aa~~L~~~~~ 575 (663)
T COG0021 499 TAAAWKYALERKDGPTALILTRQNLP---VLERTDLEGVAKGAYVLKDSGGEDPDVILIATGSEVELAVEAAKELEAEGI 575 (663)
T ss_pred HHHHHHHHHhcCCCCeEEEEecCCCC---ccCCCccccccCccEEEeecCCCCCCEEEEecccHHHHHHHHHHHHHhcCC
Confidence 99999999995 89999999997544 2333322223445678877 5899999999999999999999998899
Q ss_pred CceEEEecccccCchhhHH--HHHhcC--CcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCC--HH
Q 015415 312 DPEVIDIRSLKPFDLYTIG--NSIKKT--HRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPY--AG 385 (407)
Q Consensus 312 ~v~VI~~~~l~Pfd~~~l~--~~~~~~--~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~--~~ 385 (407)
+++||+++|...|+.+... +++-.. ...|.+|-... .||...+ ...-..||+ |.|+.+ ++
T Consensus 576 ~vrVVS~P~~~~fe~Q~~~Y~~~vL~~~v~~rvaiEa~~~-~~W~ky~------------g~~g~~ig~-~~FG~Sap~~ 641 (663)
T COG0021 576 KVRVVSMPSFELFEKQDEEYRESVLPGAVTARVAIEAGSA-LGWYKYV------------GLDGAVIGM-DSFGASAPGD 641 (663)
T ss_pred ceEEEeccchHHHHcCCHHHHHhhccCCccceEEEEeccc-cchhhhc------------CCCCcEEee-ccCcCCCCHH
Confidence 9999999999999986532 333322 33588888875 5665322 222356888 678776 48
Q ss_pred HHHHHcCCCHHHHHHHHHHHhC
Q 015415 386 TLEEWTVVQPAQIVTAVEQLCQ 407 (407)
Q Consensus 386 ~l~~~~gl~~~~I~~~i~~ll~ 407 (407)
.|.+++|+|++.|++++++++.
T Consensus 642 ~l~~~fGft~e~vv~~~~~~l~ 663 (663)
T COG0021 642 ELFKEFGFTVENVVAKAKSLLN 663 (663)
T ss_pred HHHHHhCCCHHHHHHHHHHhhC
Confidence 8999999999999999999874
No 32
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=100.00 E-value=1.4e-35 Score=265.28 Aligned_cols=153 Identities=25% Similarity=0.463 Sum_probs=139.1
Q ss_pred HHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEEecchhHH
Q 015415 91 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFL 170 (407)
Q Consensus 91 ~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~~~~f~ 170 (407)
++++++|.+++++||+++++++|++.+++ +++|.++| |+||||+||+|++|+++|+|+|+.|++||++++ .+|+
T Consensus 1 ~~~~~~l~~~~~~~~~~v~~~~Dl~~~~~----~~~~~~~~-p~r~i~~gIaE~~~vg~A~GlA~~G~~pi~~~~-~~f~ 74 (156)
T cd07033 1 KAFGEALLELAKKDPRIVALSADLGGSTG----LDKFAKKF-PDRFIDVGIAEQNMVGIAAGLALHGLKPFVSTF-SFFL 74 (156)
T ss_pred ChHHHHHHHHHhhCCCEEEEECCCCCCCC----cHHHHHhC-CCCeEEeChhHHHHHHHHHHHHHCCCeEEEEEC-HHHH
Confidence 36899999999999999999999986543 58899999 999999999999999999999999999999997 9999
Q ss_pred HHHHHHHHHhhhhhchhcCCcccccEEEEec-CCCC-CCCCcCccchH-HHHHccCCCcEEEeeCCHHHHHHHHHHHHhc
Q 015415 171 LLAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGVG-RQLGAEHSQRL-ESYFQSIPGIQMVACSTPYNAKGLMKAAIRS 247 (407)
Q Consensus 171 ~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~~-~~~G~tHsq~~-ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~ 247 (407)
+|++|||++++|++ ++||+++++ +|.. +.+|+||++.. +++++++||++|++|+|++|++.++++|++.
T Consensus 75 ~ra~dqi~~~~a~~--------~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~~ 146 (156)
T cd07033 75 QRAYDQIRHDVALQ--------NLPVKFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALEY 146 (156)
T ss_pred HHHHHHHHHHHhcc--------CCCeEEEEECCcEecCCCCcccchHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHhC
Confidence 99999999999997 799999986 4554 57999994433 3999999999999999999999999999999
Q ss_pred CCCEEEeecc
Q 015415 248 ENPVILFEHV 257 (407)
Q Consensus 248 ~~Pv~ir~~r 257 (407)
++|+|||++|
T Consensus 147 ~~P~~irl~~ 156 (156)
T cd07033 147 DGPVYIRLPR 156 (156)
T ss_pred CCCEEEEeeC
Confidence 9999999764
No 33
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=100.00 E-value=1e-33 Score=258.43 Aligned_cols=167 Identities=40% Similarity=0.621 Sum_probs=135.3
Q ss_pred ccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcC-CeeEEE
Q 015415 85 HELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTG-LRPIVE 163 (407)
Q Consensus 85 ~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G-~rp~~~ 163 (407)
++++||++++++|.+++++|++|+++++|++ +|++..+.++...+||+||||+||+|++|+|+|+|||++| ++++++
T Consensus 1 ~k~~~~~a~~~~l~~~~~~d~~vv~~~~D~~--~~~~~~~~~~~~~~~~~r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~ 78 (178)
T PF02779_consen 1 KKISMRDAFGEALAELAEEDPRVVVIGADLG--GGTFGVTFGLAFPFGPGRFINTGIAEQNMVGMAAGLALAGGLRPPVE 78 (178)
T ss_dssp -EEEHHHHHHHHHHHHHHHTTTEEEEESSTH--HHHTSTTTTHHBHHTTTTEEE--S-HHHHHHHHHHHHHHSSSEEEEE
T ss_pred CCccHHHHHHHHHHHHHhhCCCEEEEECCcC--cchhhhhhhccccCCCceEEecCcchhhccceeeeeeecccccceeE
Confidence 4789999999999999999999999999998 4445444566666778899999999999999999999999 344444
Q ss_pred ecchhHHH----HHHHHHHHhhhhhchhcCCcccccEEEEecCCC-CCCCCcCcc-chHHHHHccCCCcEEEeeCCHHHH
Q 015415 164 GMNMGFLL----LAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGV-GRQLGAEHS-QRLESYFQSIPGIQMVACSTPYNA 237 (407)
Q Consensus 164 t~~~~f~~----ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~-~~~~G~tHs-q~~ea~~~~iPgl~V~~P~d~~e~ 237 (407)
.++..|+. |+++|++++.+++ ++|+.+..+.|. .+.+|+||+ +..+++|+++|||+|++|+|+.|+
T Consensus 79 ~~f~~F~~~~q~r~~~~~~~~~~~~--------~~~v~v~~~~g~~~~~~G~tH~s~~d~~~~~~iPg~~v~~Psd~~e~ 150 (178)
T PF02779_consen 79 STFADFLTPAQIRAFDQIRNDMAYG--------QLPVPVGTRAGLGYGGDGGTHHSIEDEAILRSIPGMKVVVPSDPAEA 150 (178)
T ss_dssp EEEGGGGGGGHHHHHHHHHHHHHHH--------TS-EEEEEEESGGGSTTGTTTSSSSHHHHHHTSTTEEEEE-SSHHHH
T ss_pred eeccccccccchhhhhhhhhhhhcc--------cceecceeecCcccccccccccccccccccccccccccccCCCHHHH
Confidence 45677777 9999999999887 566654444444 578899983 445699999999999999999999
Q ss_pred HHHHHHHHh--cCCCEEEeecccccc
Q 015415 238 KGLMKAAIR--SENPVILFEHVLLYN 261 (407)
Q Consensus 238 ~~~~~~a~~--~~~Pv~ir~~r~~y~ 261 (407)
+.+++++++ +++|+|||++|.+|+
T Consensus 151 ~~~l~~a~~~~~~~P~~ir~~r~~~~ 176 (178)
T PF02779_consen 151 KGLLRAAIRRESDGPVYIREPRGLYP 176 (178)
T ss_dssp HHHHHHHHHSSSSSEEEEEEESSEES
T ss_pred HHHHHHHHHhCCCCeEEEEeeHHhCC
Confidence 999999999 789999999998876
No 34
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=99.97 E-value=2.6e-29 Score=226.98 Aligned_cols=155 Identities=37% Similarity=0.554 Sum_probs=129.4
Q ss_pred hHHHHHHHHHHHHhhhCC-CEEEEeCCCCCCCCccccchhhhhhh------CCCceEeccchhHHHHHHHHHHHhcCCee
Q 015415 88 LLFEALREGLEEEMDRDP-HVCVMGEDVGHYGGSYKVTKGLADKY------GDLRVLDTPIAENSFTGMGIGAAMTGLRP 160 (407)
Q Consensus 88 ~~r~a~~~~L~~l~~~d~-~vvvi~aDl~~~~g~~~~~~~~~~~f------gp~R~i~~GIaE~~~vg~A~GlA~~G~rp 160 (407)
++|++++++|.+++++|+ +++++++|++.+++.. ..+.| +|+||+|+||+|++|+++|+|+|++|++|
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~v~~~~~D~~~~~~~~-----~~~~~~~~~~~~~~R~~~~gIaE~~~vg~a~GlA~~G~~p 75 (168)
T smart00861 1 ATRKAFGEALAELAERDPERVVVSGADVGGSTGLD-----RGGVFPDTKGLGPGRVIDTGIAEQAMVGFAAGLALAGLRP 75 (168)
T ss_pred CHHHHHHHHHHHHHhhCCCcEEEEehhhCcCcCCC-----cCCccCCCCCCCCccEEEcCcCHHHHHHHHHHHHHcCCCc
Confidence 478999999999999955 9999999998654321 13445 13459999999999999999999999999
Q ss_pred EEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCC-CCCCCCcCccchH--HHHHccCCCcEEEeeCCHHHH
Q 015415 161 IVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGG-VGRQLGAEHSQRL--ESYFQSIPGIQMVACSTPYNA 237 (407)
Q Consensus 161 ~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G-~~~~~G~tHsq~~--ea~~~~iPgl~V~~P~d~~e~ 237 (407)
|+++++. |+.|++||+++++++. ++|+++..++| ..+++|+|| |+. +++++++||++|+.|+|++|+
T Consensus 76 i~~~~~~-f~~~a~~~~~~~~~~~--------~~~~v~~~~~g~~~g~~G~tH-~~~~~~~~~~~iP~~~v~~P~~~~e~ 145 (168)
T smart00861 76 VVAIFFT-FFDRAKDQIRSDGAMG--------RVPVVVRHDSGGGVGEDGPTH-HSQEDEALLRAIPGLKVVAPSDPAEA 145 (168)
T ss_pred EEEeeHH-HHHHHHHHHHHhCccc--------CCCEEEEecCccccCCCCccc-cchhHHHHHhcCCCcEEEecCCHHHH
Confidence 9998655 5569999999988764 58898888654 457789998 444 489999999999999999999
Q ss_pred HHHHHHHHhc-CCCEEEeecc
Q 015415 238 KGLMKAAIRS-ENPVILFEHV 257 (407)
Q Consensus 238 ~~~~~~a~~~-~~Pv~ir~~r 257 (407)
+.+++++++. ++|+|||..+
T Consensus 146 ~~~l~~a~~~~~~p~~i~~~~ 166 (168)
T smart00861 146 KGLLRAAIRRDDGPPVIRLER 166 (168)
T ss_pred HHHHHHHHhCCCCCEEEEecC
Confidence 9999999976 6899998664
No 35
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=99.91 E-value=1.6e-25 Score=192.56 Aligned_cols=123 Identities=36% Similarity=0.542 Sum_probs=113.5
Q ss_pred CceEEeecCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCccccchHHHH
Q 015415 276 EEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASL 355 (407)
Q Consensus 276 Gk~~vl~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I 355 (407)
||++++++|+|++||+||+|++.|++|++.|+++|++++|||+++++|||++.|.++++++++++|+|||+..||+|+.|
T Consensus 1 Gk~~~~~~g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~~~~~~~~~vvvvee~~~~gg~g~~i 80 (124)
T PF02780_consen 1 GKAEVLREGADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALLESLKKTGRVVVVEEHYKIGGLGSAI 80 (124)
T ss_dssp TEEEEEESSSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHHHHSHHHHHHHHSETCESEEEEHSSH
T ss_pred CEEEEEeCCCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEEEecccccchHHHHHHhccccccccccccccHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCeEEeecCCCCCCCH-HHHHHHcCCCHHHH
Q 015415 356 TAAITENFHDYLDAPIVCLSSQDVPTPYA-GTLEEWTVVQPAQI 398 (407)
Q Consensus 356 ~~~l~e~~~~~~~~~v~~ig~~d~~~~~~-~~l~~~~gl~~~~I 398 (407)
++++.++++..+..++.++|.+|.|++++ .++++++|+|+++|
T Consensus 81 ~~~l~~~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~gl~~e~I 124 (124)
T PF02780_consen 81 AEYLAENGFNDLDAPVKRLGVPDEFIPHGRAELLEAFGLDAESI 124 (124)
T ss_dssp HHHHHHHTTTGEEEEEEEEEE-SSSHHSSHHHHHHHTTHSHHHH
T ss_pred HHHHHHhCCccCCCCeEEEEECCCcccCcHHHHHHHCcCCCCcC
Confidence 99999976533347899999999999875 67788999999987
No 36
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=99.90 E-value=8.1e-22 Score=197.98 Aligned_cols=248 Identities=18% Similarity=0.188 Sum_probs=175.1
Q ss_pred hhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe--cCC
Q 015415 126 GLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG--PGG 203 (407)
Q Consensus 126 ~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~--~~G 203 (407)
.+.+++ ...|++ .-+|.+++++|+|+|.+|.|.++.| ++.++..+++.|-. ++.. ++|++++. +.|
T Consensus 42 ~~~~~~-~~~~vq-~E~E~aA~~~a~GAs~aG~Ra~taT-Sg~Gl~lm~E~l~~-a~~~--------e~P~v~v~v~R~~ 109 (352)
T PRK07119 42 RRLPEV-GGVFVQ-AESEVAAINMVYGAAATGKRVMTSS-SSPGISLKQEGISY-LAGA--------ELPCVIVNIMRGG 109 (352)
T ss_pred HHHHHh-CCEEEe-eCcHHHHHHHHHHHHhhCCCEEeec-CcchHHHHHHHHHH-HHHc--------cCCEEEEEeccCC
Confidence 334456 467888 6799999999999999999999997 55677789999853 4444 89988876 455
Q ss_pred CCCCCCcCccchHHHHH-cc-----CCCcEEEeeCCHHHHHHHHHHHHh----cCCCEEEeeccccccCCC--------C
Q 015415 204 VGRQLGAEHSQRLESYF-QS-----IPGIQMVACSTPYNAKGLMKAAIR----SENPVILFEHVLLYNLKE--------R 265 (407)
Q Consensus 204 ~~~~~G~tHsq~~ea~~-~~-----iPgl~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~~r~~y~~~~--------~ 265 (407)
++.+. ++..-.|.++ +. .-++.++.|+|+||++++..+|++ ++.||+++.+..+-.... .
T Consensus 110 p~~g~--t~~eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~ 187 (352)
T PRK07119 110 PGLGN--IQPSQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGVLGQMMEPVEFPPRKK 187 (352)
T ss_pred CCCCC--CcchhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchhhhCceeeecCCchhh
Confidence 43322 3321112222 11 345889999999999999999987 468999997653211000 0
Q ss_pred C--CCcccccc------------------------------C-------CceEEe-ecCCcEEEEEechhHHHHHHHHHH
Q 015415 266 I--PDEEYICN------------------------------L-------EEAEMV-RPGEHVTILTYSRMRYHVMQAAKT 305 (407)
Q Consensus 266 v--~~~~~~~~------------------------------~-------Gk~~vl-~eG~dv~Iia~G~~~~~al~Aa~~ 305 (407)
+ ...++.++ + ...+.. .++.|++||+||+++..+++|++.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~e~~~~~dad~~iva~Gs~~~~a~eA~~~ 267 (352)
T PRK07119 188 RPLPPKDWAVTGTKGRRKNIITSLFLDPEELEKHNLRLQEKYAKIEENEVRYEEYNTEDAELVLVAYGTSARIAKSAVDM 267 (352)
T ss_pred cccCCCCCccCCCCCCceeccCCcccCHHHHHHHHHHHHHHHHHHHhhCCcceeecCCCCCEEEEEcCccHHHHHHHHHH
Confidence 0 00011000 0 000111 146899999999999999999999
Q ss_pred HhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCHH
Q 015415 306 LVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAG 385 (407)
Q Consensus 306 L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~~ 385 (407)
|+++|+++++|++++++|||.+.|.++++++++|+|+|++. |.|..+|...+.. ..++..++..+-
T Consensus 268 L~~~Gi~v~vi~~~~l~Pfp~~~i~~~l~~~k~VivvE~n~--g~l~~ei~~~~~~------~~~~~~i~k~~G------ 333 (352)
T PRK07119 268 AREEGIKVGLFRPITLWPFPEKALEELADKGKGFLSVEMSM--GQMVEDVRLAVNG------KKPVEFYGRMGG------ 333 (352)
T ss_pred HHHcCCeEEEEeeceecCCCHHHHHHHHhCCCEEEEEeCCc--cHHHHHHHHHhCC------CCceeEEeccCC------
Confidence 99999999999999999999999999999999999999984 7788888865532 112333443211
Q ss_pred HHHHHcCCCHHHHHHHHHHHh
Q 015415 386 TLEEWTVVQPAQIVTAVEQLC 406 (407)
Q Consensus 386 ~l~~~~gl~~~~I~~~i~~ll 406 (407)
..++++.|.+.+++++
T Consensus 334 -----~~~~~~~i~~~~~~~~ 349 (352)
T PRK07119 334 -----MVPTPEEILEKIKEIL 349 (352)
T ss_pred -----EeCCHHHHHHHHHHHh
Confidence 2367888888888875
No 37
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.90 E-value=5.1e-22 Score=212.38 Aligned_cols=246 Identities=19% Similarity=0.200 Sum_probs=178.2
Q ss_pred CceEeccchhHHHHHHHHHHHhcCCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCCcCcc
Q 015415 134 LRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHS 213 (407)
Q Consensus 134 ~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G~tHs 213 (407)
+-++....+|.+++.+|+|+|.+|.|.++.| .+..+.++.|+|.+ +++.. .++|+|++...+++ .++++.
T Consensus 46 ~~~~~~~~~E~~a~~~~~GAs~aG~ra~t~t-s~~Gl~~~~e~l~~-~~~~g------~~~~iV~~~~~~~g--p~~~~~ 115 (595)
T TIGR03336 46 GVYFEWSVNEKVAVEVAAGAAWSGLRAFCTM-KHVGLNVAADPLMT-LAYTG------VKGGLVVVVADDPS--MHSSQN 115 (595)
T ss_pred cEEEEECcCHHHHHHHHHHHHhcCcceEEEc-cCCchhhhHHHhhh-hhhhc------CcCceEEEEccCCC--Cccchh
Confidence 3566777799999999999999999999997 55677889999965 55431 27888888754422 123332
Q ss_pred chHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----cCCCEEEeeccccccC--------CCC---C--CCcc---ccc
Q 015415 214 QRLESYFQSIPGIQMVACSTPYNAKGLMKAAIR----SENPVILFEHVLLYNL--------KER---I--PDEE---YIC 273 (407)
Q Consensus 214 q~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~~r~~y~~--------~~~---v--~~~~---~~~ 273 (407)
...+.++....++.|+.|+|+||++++..+|++ ++.||+++.+..+-.. .+. . +..+ +..
T Consensus 116 ~q~d~~~~~~~~~~vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 195 (595)
T TIGR03336 116 EQDTRHYAKFAKIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTTRISHMRGDVELGEIPKEEVVKGFEKDPERYVM 195 (595)
T ss_pred hHhHHHHHHhcCCeEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeccceeeEecCCCcccccccCCCCChhhcCC
Confidence 212222333347779999999999999999987 4789999866422110 000 0 0000 000
Q ss_pred -c--------------------CCc--e-EEeecCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhH
Q 015415 274 -N--------------------LEE--A-EMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTI 329 (407)
Q Consensus 274 -~--------------------~Gk--~-~vl~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l 329 (407)
+ ... . ++..++.|++||++|++++.+++|++.| |++++|++++++||||++.|
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~iv~~G~~~~~a~ea~~~~---Gi~~~v~~~~~i~Pld~~~i 272 (595)
T TIGR03336 196 VPAIARVRHKKLLSKQHKLREELNESPLNRLEINGAKIGVIASGIAYNYVKEALERL---GVDVSVLKIGFTYPVPEGLV 272 (595)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHhCCCceeccCCCCEEEEEcCHHHHHHHHHHHHc---CCCeEEEEeCCCCCCCHHHH
Confidence 0 000 1 1223468999999999999999988776 99999999999999999999
Q ss_pred HHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCHHHHHHHcCCCHHHHHHHHHHH
Q 015415 330 GNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 405 (407)
Q Consensus 330 ~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~l 405 (407)
.+.++++++|+|||||. +++++.+...+.+. ..++.++|++|.|++ +..++|++.|.++++++
T Consensus 273 ~~~~~~~~~vivvEe~~--~~~~~~~~~~~~~~-----~~~v~~~G~~d~fi~------~~~~Ld~~~i~~~i~~~ 335 (595)
T TIGR03336 273 EEFLSGVEEVLVVEELE--PVVEEQVKALAGTA-----GLNIKVHGKEDGFLP------REGELNPDIVVNALAKF 335 (595)
T ss_pred HHHHhcCCeEEEEeCCc--cHHHHHHHHHHHhc-----CCCeEEecccCCccC------cccCcCHHHHHHHHHHh
Confidence 99999999999999997 45555555554432 237899999999988 34689999999999764
No 38
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=99.89 E-value=2.1e-21 Score=196.48 Aligned_cols=242 Identities=16% Similarity=0.202 Sum_probs=170.4
Q ss_pred CCceEeccchhHHHHHHHHHHHhcCCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe--cCCCCCCCCc
Q 015415 133 DLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG--PGGVGRQLGA 210 (407)
Q Consensus 133 p~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~--~~G~~~~~G~ 210 (407)
...|+++- +|.+++++|.|+|.+|.|.++.|..+ .+..+.|++-...+ . ++|+|++. +.|++.+...
T Consensus 48 ~~~~vq~E-~E~aA~~~a~GAs~aG~Ra~TaTSg~-Gl~lm~E~~~~a~~-~--------e~P~Viv~~~R~gp~tg~p~ 116 (376)
T PRK08659 48 GGVFIQME-DEIASMAAVIGASWAGAKAMTATSGP-GFSLMQENIGYAAM-T--------ETPCVIVNVQRGGPSTGQPT 116 (376)
T ss_pred CCEEEEeC-chHHHHHHHHhHHhhCCCeEeecCCC-cHHHHHHHHHHHHH-c--------CCCEEEEEeecCCCCCCCCC
Confidence 35789988 99999999999999999999998554 55668899865443 2 79998887 5666444332
Q ss_pred CccchH-H-HHHc---cCCCcEEEeeCCHHHHHHHHHHHHh----cCCCEEEeeccccccC--------CCCC-------
Q 015415 211 EHSQRL-E-SYFQ---SIPGIQMVACSTPYNAKGLMKAAIR----SENPVILFEHVLLYNL--------KERI------- 266 (407)
Q Consensus 211 tHsq~~-e-a~~~---~iPgl~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~~r~~y~~--------~~~v------- 266 (407)
.++|.. . ..+. .. ++.|++|+|+||++++...|++ ++.||+++.+..+-.. ...+
T Consensus 117 ~~~q~D~~~~~~~~hgd~-~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~ 195 (376)
T PRK08659 117 KPAQGDMMQARWGTHGDH-PIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEVVGHMREKVVLPEPDEIEIIERKL 195 (376)
T ss_pred CcCcHHHHHHhcccCCCc-CcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechHhhCCcccccCCChhhcccccccc
Confidence 223333 3 3322 33 3669999999999999999987 4789999865421000 0000
Q ss_pred CC------cccc-----cc----CC--------------------------------------------ceEEee-cCCc
Q 015415 267 PD------EEYI-----CN----LE--------------------------------------------EAEMVR-PGEH 286 (407)
Q Consensus 267 ~~------~~~~-----~~----~G--------------------------------------------k~~vl~-eG~d 286 (407)
+. .+|. ++ .| ..+... +++|
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~ad 275 (376)
T PRK08659 196 PKVPPEAYKPFDDPEGGVPPMPAFGDGYRFHVTGLTHDERGFPTTDPETHEKLVRRLVRKIEKNRDDIVLYEEYMLEDAE 275 (376)
T ss_pred CCCCccccCCCCCCCCCCCCCccCCCCCeEEeCCccccCCCCcCcCHHHHHHHHHHHHHHHHHHHhhcCCceeecCCCCC
Confidence 00 0000 00 01 011112 4689
Q ss_pred EEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccC
Q 015415 287 VTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDY 366 (407)
Q Consensus 287 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~ 366 (407)
++||++|++...+++|++.|+++|++++++++++++|||.+.|.+.++++++|+|||+| .|.+..++...+..
T Consensus 276 ~~iv~~Gs~~~~a~eAv~~Lr~~G~~v~~l~~~~l~Pfp~~~i~~~~~~~k~VivvEe~--~g~l~~el~~~~~~----- 348 (376)
T PRK08659 276 VVVVAYGSVARSARRAVKEAREEGIKVGLFRLITVWPFPEEAIRELAKKVKAIVVPEMN--LGQMSLEVERVVNG----- 348 (376)
T ss_pred EEEEEeCccHHHHHHHHHHHHhcCCceEEEEeCeecCCCHHHHHHHHhcCCEEEEEeCC--HHHHHHHHHHHhCC-----
Confidence 99999999999999999999999999999999999999999999999999999999999 47777777766632
Q ss_pred CCCCeEEeecCCCCCCCHHHHHHHcCCCHHHHHHHHHHH
Q 015415 367 LDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 405 (407)
Q Consensus 367 ~~~~v~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~l 405 (407)
..++..++.-+ + .-++++.|.+.++++
T Consensus 349 -~~~~~~i~~~~-----G------~~~~~~ei~~~~~~~ 375 (376)
T PRK08659 349 -RAKVEGINKIG-----G------ELITPEEILEKIKEV 375 (376)
T ss_pred -CCCeeEEeccC-----C------CcCCHHHHHHHHHhh
Confidence 11222222211 0 136788888888775
No 39
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=99.88 E-value=1.2e-20 Score=190.64 Aligned_cols=243 Identities=20% Similarity=0.217 Sum_probs=172.2
Q ss_pred hhCCCceEeccchhHHHHHHHHHHHhcCCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe--cCCCCCC
Q 015415 130 KYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG--PGGVGRQ 207 (407)
Q Consensus 130 ~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~--~~G~~~~ 207 (407)
++ ...|+++- +|.+++++|+|+|.+|.|.++.|..+ .+..+.|+|-.. +.. ++|+|++. ++|++++
T Consensus 45 ~~-g~~~vq~E-~E~aA~~~a~GAs~aG~Ra~taTSg~-G~~lm~E~~~~a-~~~--------e~P~V~~~~~R~GpstG 112 (375)
T PRK09627 45 KC-GGTFIQME-DEISGISVALGASMSGVKSMTASSGP-GISLKAEQIGLG-FIA--------EIPLVIVNVMRGGPSTG 112 (375)
T ss_pred Hc-CCEEEEcC-CHHHHHHHHHHHHhhCCCEEeecCCc-hHHHHhhHHHHH-Hhc--------cCCEEEEEeccCCCcCC
Confidence 44 35677775 99999999999999999999998555 456688998644 333 89999886 5677655
Q ss_pred CCcCccchH--HHHH---ccCCCcEEEeeCCHHHHHHHHHHHHh----cCCCEEEeeccccccCC--------CCC----
Q 015415 208 LGAEHSQRL--ESYF---QSIPGIQMVACSTPYNAKGLMKAAIR----SENPVILFEHVLLYNLK--------ERI---- 266 (407)
Q Consensus 208 ~G~tHsq~~--ea~~---~~iPgl~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~~r~~y~~~--------~~v---- 266 (407)
......|.+ +... ...|.+ |++|+|+||++++..+|++ +..||+++.+..+-... ..+
T Consensus 113 ~p~~~~q~D~~~~~~~~hgd~~~i-vl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~ 191 (375)
T PRK09627 113 LPTRVAQGDVNQAKNPTHGDFKSI-ALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDETVGHMYGKAVIPDLEEVQKMI 191 (375)
T ss_pred CCCccchHHHHHHhcCCCCCcCcE-EEeCCCHHHHHHHHHHHHHHHHHHcCceEEecchHHhCCeeeccCCChHhccccc
Confidence 432222222 2222 245555 9999999999999999987 47899998654211000 000
Q ss_pred -----C--C-ccc-cccC-------------------------------------------------------CceEEee
Q 015415 267 -----P--D-EEY-ICNL-------------------------------------------------------EEAEMVR 282 (407)
Q Consensus 267 -----~--~-~~~-~~~~-------------------------------------------------------Gk~~vl~ 282 (407)
+ + .+| .+++ ..++...
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~y~ 271 (375)
T PRK09627 192 INRKEFDGDKKDYKPYGVAQDEPAVLNPFFKGYRYHVTGLHHGPIGFPTEDAKICGKLIDRLFNKIESHQDEIEEYEEYM 271 (375)
T ss_pred cccccccCCcccccCCccCCCCCcccCCCCCCceEEecCccccccCCcCCCHHHHHHHHHHHHHHHHHHhhhcCCceeeC
Confidence 0 0 000 0000 0011111
Q ss_pred -cCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHh
Q 015415 283 -PGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITE 361 (407)
Q Consensus 283 -eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e 361 (407)
+++|++||+||+....+++|++.|+++|++++++.+++++|||++.|++.+++.++|+|||++. |.|+.+|.+.+..
T Consensus 272 ~~dAd~~IV~~GSt~~~~keAv~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~viVvE~n~--Gql~~~v~~~~~~ 349 (375)
T PRK09627 272 LDDAEILIIAYGSVSLSAKEAIKRLREEGIKVGLFRPITLWPSPAKKLKEIGDKFEKILVIELNM--GQYLEEIERVMQR 349 (375)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEeCeEECCCHHHHHHHHhcCCEEEEEcCCh--HHHHHHHHHHhCC
Confidence 3578999999999999999999999999999999999999999999999999999999999997 8899888877732
Q ss_pred ccccCCCCCeEEeecCCCCCCCHHHHHHHcCCCHHHHHHHHHHH
Q 015415 362 NFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 405 (407)
Q Consensus 362 ~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~l 405 (407)
.. ...+..++.. -++++.|.+.|+++
T Consensus 350 ~~----~~~i~~~~G~--------------~~~~~~i~~~i~~~ 375 (375)
T PRK09627 350 DD----FHFLGKANGR--------------PISPSEIIAKVKEL 375 (375)
T ss_pred CC----ceEEeeeCCC--------------cCCHHHHHHHHHhC
Confidence 11 1223333332 26888888888764
No 40
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=99.87 E-value=5.4e-20 Score=188.13 Aligned_cols=214 Identities=19% Similarity=0.259 Sum_probs=160.3
Q ss_pred ceEeccchhHHHHHHHHHHHhcCCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe--cCCCCCCCCcCc
Q 015415 135 RVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG--PGGVGRQLGAEH 212 (407)
Q Consensus 135 R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~--~~G~~~~~G~tH 212 (407)
.|+++- +|.++++++.|+|.+|.|.++.| .+..+..+.|.|.. ++.. ++|+|++. ++|++ + -++|
T Consensus 58 ~~vq~E-~E~~A~~~~~GAs~aGaRa~TaT-S~~Gl~lm~E~l~~-aa~~--------~~P~V~~~~~R~~~~-~-~~i~ 124 (407)
T PRK09622 58 EFVMVE-SEHAAMSACVGAAAAGGRVATAT-SSQGLALMVEVLYQ-ASGM--------RLPIVLNLVNRALAA-P-LNVN 124 (407)
T ss_pred EEEeec-cHHHHHHHHHHHHhhCcCEEeec-CcchHHHHhhHHHH-HHHh--------hCCEEEEEeccccCC-C-cCCC
Confidence 577765 99999999999999999999997 55667788999864 5554 89988887 34433 2 3455
Q ss_pred cchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhc------CCCEEEeeccccccC--------C--------CC-----
Q 015415 213 SQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRS------ENPVILFEHVLLYNL--------K--------ER----- 265 (407)
Q Consensus 213 sq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~------~~Pv~ir~~r~~y~~--------~--------~~----- 265 (407)
.+.-|.+.....+|.+++|+|+||++++...|++. ..||+++.+...... . ++
T Consensus 125 ~d~~D~~~~r~~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~sh~~~~v~~~~~~~~~~~~~~~~~~~ 204 (407)
T PRK09622 125 GDHSDMYLSRDSGWISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLCSHTAQNVRPLSDEVAYQFVGEYQTKN 204 (407)
T ss_pred chHHHHHHHhcCCeEEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhhhCceeeecCCCHHHHhhccCcccccc
Confidence 33334344456789999999999999999999873 679999866432000 0 00
Q ss_pred -C------------CCcccccc--------------------------CC----ceEEe-ecCCcEEEEEechhHHHHHH
Q 015415 266 -I------------PDEEYICN--------------------------LE----EAEMV-RPGEHVTILTYSRMRYHVMQ 301 (407)
Q Consensus 266 -v------------~~~~~~~~--------------------------~G----k~~vl-~eG~dv~Iia~G~~~~~al~ 301 (407)
. ...++.++ .| ..+.. .+++|++||++|+++..+++
T Consensus 205 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~k~~g~~y~~~e~~~~edad~~iV~~Gs~~~~a~e 284 (407)
T PRK09622 205 SMLDFDKPVTYGAQTEEDWHFEHKAQLHHALMSSSSVIEEVFNDFAKLTGRKYNLVETYQLEDAEVAIVALGTTYESAIV 284 (407)
T ss_pred cccCCCCCccCCCCCCCCeeEEechhcchhhhhhHHHHHHHHHHHHHHhCCCCCceeecCCCCCCEEEEEEChhHHHHHH
Confidence 0 00000000 01 01111 14689999999999999999
Q ss_pred HHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHh
Q 015415 302 AAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITE 361 (407)
Q Consensus 302 Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e 361 (407)
|++.|+++|+++++|++++++|||.+.|.+.++++++|+|+|++...||+|+.+.+.+..
T Consensus 285 a~~~L~~~G~kvgvi~~r~~~Pfp~~~l~~~l~~~k~VvVvE~~~~~Gg~G~l~~ev~~a 344 (407)
T PRK09622 285 AAKEMRKEGIKAGVATIRVLRPFPYERLGQALKNLKALAILDRSSPAGAMGALFNEVTSA 344 (407)
T ss_pred HHHHHHhCCCCeEEEEeeEhhhCCHHHHHHHHhcCCEEEEEeCCCCCCCccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999866655543
No 41
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=99.84 E-value=6.5e-19 Score=178.82 Aligned_cols=212 Identities=14% Similarity=0.144 Sum_probs=155.2
Q ss_pred ceEeccchhHHHHHHHHHHHhcCCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe--cCCCCCCCCcCc
Q 015415 135 RVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG--PGGVGRQLGAEH 212 (407)
Q Consensus 135 R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~--~~G~~~~~G~tH 212 (407)
.|+++ -+|.+++++|+|+|++|.|.++.| .+..+..+.|+|. .++.. ++|+|+.. +.|+ + .+++|
T Consensus 51 ~~~~~-E~E~aA~~~aiGAs~aGaRa~TaT-Sg~Gl~lm~E~l~-~aa~~--------~lPiVi~~~~R~~p-~-~~~~~ 117 (390)
T PRK08366 51 QYVPV-ESEHSAMAACIGASAAGARAFTAT-SAQGLALMHEMLH-WAAGA--------RLPIVMVDVNRAMA-P-PWSVW 117 (390)
T ss_pred EEEEe-CCHHHHHHHHHHHHhhCCCeEeee-CcccHHHHhhHHH-HHHhc--------CCCEEEEEeccCCC-C-CCCCc
Confidence 34444 499999999999999999999997 5566778999986 45554 89999886 5565 2 23554
Q ss_pred cchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----cCCCEEEeecccccc---------CC-------C---C---C
Q 015415 213 SQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIR----SENPVILFEHVLLYN---------LK-------E---R---I 266 (407)
Q Consensus 213 sq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~~r~~y~---------~~-------~---~---v 266 (407)
...-|.++....|+.+++|+|+||++++...|++ ...||+++.+..+.. .. + . +
T Consensus 118 ~~q~D~~~~~d~g~i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~sh~~~~v~~~~~~~v~~~~~~~~~~~~~ 197 (390)
T PRK08366 118 DDQTDSLAQRDTGWMQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILSHTYDVVEMIPQELVDEFLPPRKPLYSL 197 (390)
T ss_pred chhhHHHHHhhcCEEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccccccccccCCCHHHHhhhcCcccccccc
Confidence 2222334445568999999999999999999987 478999997542100 00 0 0 0
Q ss_pred --CCcc----------c------cc--------------------cCCceE-----Eee-cCCcEEEEEechhHHHHHHH
Q 015415 267 --PDEE----------Y------IC--------------------NLEEAE-----MVR-PGEHVTILTYSRMRYHVMQA 302 (407)
Q Consensus 267 --~~~~----------~------~~--------------------~~Gk~~-----vl~-eG~dv~Iia~G~~~~~al~A 302 (407)
++++ . .. .+|+.+ ... +++|++||+||++...+++|
T Consensus 198 ~~~~~p~s~~~~~~~~~~~e~~~~~~~~~e~~~~~i~~~~~~~~k~~gr~~~~~~e~y~~edAe~~iV~~Gs~~~~~~ea 277 (390)
T PRK08366 198 ADFDNPISVGALATPADYYEFRYKIAKAMEEAKKVIKEVGKEFGERFGRDYSQMIETYYTDDADFVFMGMGSLMGTVKEA 277 (390)
T ss_pred CCCCCCcccccCCCCcceeeeeHhhhHHHHhHHHHHHHHHHHHHHHhCccccccceecCCCCCCEEEEEeCccHHHHHHH
Confidence 0000 0 00 011111 111 45789999999999999999
Q ss_pred HHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCccccc---hHHHHHHHH
Q 015415 303 AKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGG---IGASLTAAI 359 (407)
Q Consensus 303 a~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GG---lGs~I~~~l 359 (407)
++.|+++|++++++.+++++|||.+.|.+.+++.++|+|+|++...|. |..++...+
T Consensus 278 v~~lr~~G~kvg~l~i~~~~PfP~~~i~~~l~~~k~ViVvE~n~~~Gq~g~l~~ev~~~l 337 (390)
T PRK08366 278 VDLLRKEGYKVGYAKVRWFRPFPKEELYEIAESVKGIAVLDRNFSFGQEGILFTEAKGAL 337 (390)
T ss_pred HHHHHhcCCceeeEEEeeecCCCHHHHHHHHhcCCEEEEEeCCCCCCcccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987676 444554444
No 42
>PRK05261 putative phosphoketolase; Provisional
Probab=99.81 E-value=9.8e-18 Score=180.83 Aligned_cols=295 Identities=12% Similarity=0.047 Sum_probs=198.7
Q ss_pred ccchHHHHHHHHHHHHhhhCCC-EEEEeCCCCCCCCccccchh-------------hhhhhCCCceEeccchhHHHHHHH
Q 015415 85 HELLLFEALREGLEEEMDRDPH-VCVMGEDVGHYGGSYKVTKG-------------LADKYGDLRVLDTPIAENSFTGMG 150 (407)
Q Consensus 85 ~~~~~r~a~~~~L~~l~~~d~~-vvvi~aDl~~~~g~~~~~~~-------------~~~~fgp~R~i~~GIaE~~~vg~A 150 (407)
...+||. +++.|.++++.+|+ +++.++|...|+...++.+. ..... .+|+|+ +++|++|.|++
T Consensus 389 ~~~atr~-~g~~l~~v~~~np~~frvf~pDe~~SNrl~~~f~~t~r~~~~~~~~~d~~~~~-~Grvie-~LsEh~~~g~~ 465 (785)
T PRK05261 389 MAEATRV-LGKYLRDVIKLNPDNFRIFGPDETASNRLQAVFEVTDRQWMAEILPYDEHLAP-DGRVME-VLSEHLCEGWL 465 (785)
T ss_pred ccccHHH-HHHHHHHHHHhCCCceEEEcCCcchhhccHhHHhhhccccccccCCcccccCC-CCCeee-eecHHHHHHHH
Confidence 4567888 99999999999999 88899999876654322210 01123 479999 99999999999
Q ss_pred HHHHhcCCeeEEEecchhHH---HHHHHHH----HHhhhhhchhcCCccccc-EEEEecC-C-CCCCCCcCccch---HH
Q 015415 151 IGAAMTGLRPIVEGMNMGFL---LLAFNQI----SNNCGMLHYTSGGQFTIP-IVIRGPG-G-VGRQLGAEHSQR---LE 217 (407)
Q Consensus 151 ~GlA~~G~rp~~~t~~~~f~---~ra~dqi----~~~~a~~~~~~gg~~~lp-vvi~~~~-G-~~~~~G~tHsq~---~e 217 (407)
.|+++.|.++++.++- .|. ..++.|+ |.. ....|+ .+++ +.++..+ . -.+.+|.|| |+ +|
T Consensus 466 ~Gy~LtG~~~~~~sYe-aF~~ivd~m~~q~~kw~r~~-~~~~wr----~~~~sLn~l~Ts~~~~qghNG~TH-Q~Pg~ie 538 (785)
T PRK05261 466 EGYLLTGRHGFFSSYE-AFIHIVDSMFNQHAKWLKVA-REIPWR----KPIPSLNYLLTSHVWRQDHNGFSH-QDPGFID 538 (785)
T ss_pred HHHHhcCCCcceecHH-HHHHHHHHHHHHHHHHHHHH-hhcccC----CCCcceeEEeecceeecCCCCCCC-CCchHHH
Confidence 9999999999999855 565 7888888 532 111111 1222 2233232 2 357899999 76 55
Q ss_pred --HHHccCCCcEEEeeCCHHHHHHHHHHHHhc-CCCEEEeeccccccCCCCCCCcc---ccccCCceEEee--c-----C
Q 015415 218 --SYFQSIPGIQMVACSTPYNAKGLMKAAIRS-ENPVILFEHVLLYNLKERIPDEE---YICNLEEAEMVR--P-----G 284 (407)
Q Consensus 218 --a~~~~iPgl~V~~P~d~~e~~~~~~~a~~~-~~Pv~ir~~r~~y~~~~~v~~~~---~~~~~Gk~~vl~--e-----G 284 (407)
+.++. |++.|+.|+|++|+..+++.|++. ++|.+|..+|...+. ..+.+ ..+..|.+ ++. + +
T Consensus 539 ~l~~~r~-~~~rV~rPaDaNe~laa~~~al~s~~~p~~IvlsRQ~lp~---~~~~~~a~~~~~kGay-i~~~a~~~~~~~ 613 (785)
T PRK05261 539 HVANKKP-DVIRVYLPPDANTLLAVADHCLRSRNYINVIVAGKQPRPQ---WLSMDEARKHCTKGLG-IWDWASNDDGEE 613 (785)
T ss_pred HHHhcCC-CcceEEeCCCHHHHHHHHHHHHHhCCCCEEEEEeCCCCcc---cCChHHHHHhccCceE-EEEeccCCCCCC
Confidence 45566 999999999999999999999986 679999988864331 11111 22445543 343 1 3
Q ss_pred CcEEEEEechhHHH-HHHHHHHHhhC--CCCceEEEecccccCc------------hhhHHHHHhcCCcEEEEecCcccc
Q 015415 285 EHVTILTYSRMRYH-VMQAAKTLVNK--GYDPEVIDIRSLKPFD------------LYTIGNSIKKTHRVLIVEECMRTG 349 (407)
Q Consensus 285 ~dv~Iia~G~~~~~-al~Aa~~L~~~--Gi~v~VI~~~~l~Pfd------------~~~l~~~~~~~~~vvvvEe~~~~G 349 (407)
.|++|+++|+++.. |++|++.|+++ |++++||++. .+|. .+.+.++.-..+.||+.= -
T Consensus 614 pDvvL~atGsev~leAlaAa~~L~~~~pgikvRVVSv~--dLf~lQ~~~~~~~~lsd~~f~~lFt~d~pvif~~-----h 686 (785)
T PRK05261 614 PDVVLACAGDVPTLETLAAADLLREHFPDLKIRVVNVV--DLMKLQPPSEHPHGLSDREFDALFTTDKPVIFAF-----H 686 (785)
T ss_pred CCEEEEEeCcHhhHHHHHHHHHHHhhCCCCCEEEEEec--hhhhhCCcccCCCCCCHHHHHHhCCCCCcEEEEe-----C
Confidence 69999999999988 99999999999 9999999994 4433 334444444334444322 2
Q ss_pred chHHHHHHHHHhccccCCCCCeEEeecCCCCC-CCHHHHHHHcCCCHHHHHHHHHH
Q 015415 350 GIGASLTAAITENFHDYLDAPIVCLSSQDVPT-PYAGTLEEWTVVQPAQIVTAVEQ 404 (407)
Q Consensus 350 GlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~-~~~~~l~~~~gl~~~~I~~~i~~ 404 (407)
|.-..|...+.... ...++...|-++.-. -..-++.-..++|--.++..+.+
T Consensus 687 gyp~~i~~l~~~r~---~~~~~~v~gy~e~g~tttp~dm~~~N~~~r~~l~~~a~~ 739 (785)
T PRK05261 687 GYPWLIHRLTYRRT---NHHNFHVRGYKEEGTTTTPFDMVVLNELDRFHLAIDAID 739 (785)
T ss_pred CCHHHHHHHhccCC---CCCccEEEEEecCCCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 33455666665432 123455666655422 22345666667777777665543
No 43
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=99.81 E-value=2.6e-17 Score=167.50 Aligned_cols=216 Identities=15% Similarity=0.181 Sum_probs=157.3
Q ss_pred CceEeccchhHHHHHHHHHHHhcCCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecC-CCCCCCCcCc
Q 015415 134 LRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPG-GVGRQLGAEH 212 (407)
Q Consensus 134 ~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~-G~~~~~G~tH 212 (407)
..|+++ -+|.+++++++|+|.+|.|.++.| ++..+..+.|+|. .++.. ++|+|++..+ +.+.+. ..|
T Consensus 51 ~~~v~~-EsE~aA~~~~~GAs~aGaRa~TaT-S~~Gl~lm~E~l~-~aag~--------~lP~V~vv~~R~~~~p~-~i~ 118 (394)
T PRK08367 51 AEFIKV-ESEHSAISACVGASAAGVRTFTAT-ASQGLALMHEVLF-IAAGM--------RLPIVMAIGNRALSAPI-NIW 118 (394)
T ss_pred eEEEEe-CCHHHHHHHHHHHHhhCCCeEeee-ccchHHHHhhHHH-HHHHc--------cCCEEEEECCCCCCCCC-CcC
Confidence 356666 499999999999999999999997 5567788999985 45655 8999988621 222222 233
Q ss_pred cchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhc----C--CCEEEeecccccc---------C-------CCCC----
Q 015415 213 SQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRS----E--NPVILFEHVLLYN---------L-------KERI---- 266 (407)
Q Consensus 213 sq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~----~--~Pv~ir~~r~~y~---------~-------~~~v---- 266 (407)
...-|.+....-||.++.|+|.||++++...|++. + .||+++.+..... . .+..
T Consensus 119 ~d~~D~~~~rd~g~~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~sH~~e~v~~~~~~~~~~~~~~~~~~~ 198 (394)
T PRK08367 119 NDWQDTISQRDTGWMQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFILTHTVEPVEIPDQEVVDEFLGEYEPKH 198 (394)
T ss_pred cchHHHHhccccCeEEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhhcCcccccccCCHHHHhhhcCcccccc
Confidence 12122334445678899999999999999999873 3 6999986652100 0 0000
Q ss_pred --CCc--c----------ccc--------------------------cCCc-eEEee----cCCcEEEEEechhHHHHHH
Q 015415 267 --PDE--E----------YIC--------------------------NLEE-AEMVR----PGEHVTILTYSRMRYHVMQ 301 (407)
Q Consensus 267 --~~~--~----------~~~--------------------------~~Gk-~~vl~----eG~dv~Iia~G~~~~~al~ 301 (407)
.+. + ..+ .+|+ ...+. +++|++||++|+....+++
T Consensus 199 ~~~d~~~p~~~g~~~~p~~~~~~~~~~~~~~~~~~~~i~e~~~e~~~~~grky~~~e~yg~eDAe~viV~~GS~~~~~ke 278 (394)
T PRK08367 199 AYLDPARPITQGALAFPAHYMEARYTVWEAMENAKKVIDEAFAEFEKKFGRKYQKIEEYRTEDAEIIFVTMGSLAGTLKE 278 (394)
T ss_pred cccCCCCCcccCCCCCCCceEEEEeecHHHHHHhHHHHHHHHHHHHHHhCCccceeEEeCCCCCCEEEEEeCccHHHHHH
Confidence 000 0 000 0221 11121 4689999999999999999
Q ss_pred HHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCcc---ccchHHHHHHHHHh
Q 015415 302 AAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMR---TGGIGASLTAAITE 361 (407)
Q Consensus 302 Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~---~GGlGs~I~~~l~e 361 (407)
|++.|+++|++++++.+++++|||.+.|++.+++.++|+|+|.+.. .|.|..+|...|..
T Consensus 279 av~~LR~~G~kVGllri~~~rPFP~~~i~~~l~~~k~ViVvE~n~s~g~~g~l~~dV~aal~~ 341 (394)
T PRK08367 279 FVDKLREEGYKVGAAKLTVYRPFPVEEIRALAKKAKVLAFLEKNISFGLGGAVFADASAALVN 341 (394)
T ss_pred HHHHHHhcCCcceeEEEeEecCCCHHHHHHHHccCCEEEEEeCCCCCCCCCcHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999964 35688888888854
No 44
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=99.80 E-value=3.4e-18 Score=181.53 Aligned_cols=214 Identities=22% Similarity=0.300 Sum_probs=155.0
Q ss_pred ceEeccchhHHHHHHHHHHHhcCCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe--cCCCCCCCCcCc
Q 015415 135 RVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG--PGGVGRQLGAEH 212 (407)
Q Consensus 135 R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~--~~G~~~~~G~tH 212 (407)
-.+-..-+|.+++++|.|+|.+|.|.++.|.. ..+..+.|.|. .++.. ++|+|++. +.|++.+....+
T Consensus 238 ~~~~q~E~E~aA~~~a~GAs~aG~Ra~taTSg-~Gl~lm~E~l~-~a~~~--------~~P~Vi~~~~R~gpstg~~t~~ 307 (562)
T TIGR03710 238 VVVVQAEDEIAAINMAIGASYAGARAMTATSG-PGFALMTEALG-LAGMT--------ETPLVIVDVQRGGPSTGLPTKT 307 (562)
T ss_pred cEEEeeccHHHHHHHHHhHHhcCCceeecCCC-CChhHhHHHHh-HHHhc--------cCCEEEEEcccCCCCCCCCCCc
Confidence 34444569999999999999999999999754 55667889983 34433 89999887 566654433222
Q ss_pred cchH-H-HHHcc--CCCcEEEeeCCHHHHHHHHHHHHh----cCCCEEEeeccccccC--------CCCCC---------
Q 015415 213 SQRL-E-SYFQS--IPGIQMVACSTPYNAKGLMKAAIR----SENPVILFEHVLLYNL--------KERIP--------- 267 (407)
Q Consensus 213 sq~~-e-a~~~~--iPgl~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~~r~~y~~--------~~~v~--------- 267 (407)
.|.. . +.+.. .-++.|++|+|+||++++..+|++ +..||+++.+..+-.. ...+.
T Consensus 308 eq~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l~~~~~~v~~~~~~~~~~~~~~~~~~ 387 (562)
T TIGR03710 308 EQSDLLFALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYLANSYETVPPPDLDDLPIIDRGKVLE 387 (562)
T ss_pred cHHHHHHHhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHHhCCceeccCCChhhccccccccccc
Confidence 2322 1 32221 224789999999999999999987 4789999865421100 00000
Q ss_pred -Cccc-------------ccc--------------------------------------------CCceEEee-cCCcEE
Q 015415 268 -DEEY-------------ICN--------------------------------------------LEEAEMVR-PGEHVT 288 (407)
Q Consensus 268 -~~~~-------------~~~--------------------------------------------~Gk~~vl~-eG~dv~ 288 (407)
..+| .++ ++..+... +++|++
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~~~~e~g~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~da~~~ 467 (562)
T TIGR03710 388 PEEEYKRYELTEDGISPRAIPGTPGGIHRATGDEHDETGHISEDPENRVKMMEKRARKLETIAKEIPEPEVYGDEDADVL 467 (562)
T ss_pred CCCCCCCCCcCCCCCCCCCcCCCCCceEEecCCccCCCCCcCCCHHHHHHHHHHHHHHHHHHHhhCCCceeecCCCCCEE
Confidence 0000 000 00011111 357899
Q ss_pred EEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHH
Q 015415 289 ILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAI 359 (407)
Q Consensus 289 Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l 359 (407)
||+||++...+++|++.|+++|++++++.+++++|||.+.|++.+++.++|+|+|++.. |.|..+|...+
T Consensus 468 iv~~Gs~~~~~~eav~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~v~VvE~n~~-Gql~~~v~~~~ 537 (562)
T TIGR03710 468 VIGWGSTYGAIREAVERLRAEGIKVALLHLRLLYPFPKDELAELLEGAKKVIVVEQNAT-GQLAKLLRAET 537 (562)
T ss_pred EEEeCCCHHHHHHHHHHHHhcCCeEEEEEeCeecCCCHHHHHHHHhcCCEEEEEccChh-hhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999964 88888888776
No 45
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=99.66 E-value=1.7e-14 Score=156.10 Aligned_cols=294 Identities=16% Similarity=0.156 Sum_probs=208.5
Q ss_pred ccchHHHHHHHHHHHHhhhC---CCEEEEeCCCCCCCCccccchhhhhh----------h--------------CCCceE
Q 015415 85 HELLLFEALREGLEEEMDRD---PHVCVMGEDVGHYGGSYKVTKGLADK----------Y--------------GDLRVL 137 (407)
Q Consensus 85 ~~~~~r~a~~~~L~~l~~~d---~~vvvi~aDl~~~~g~~~~~~~~~~~----------f--------------gp~R~i 137 (407)
+++++..||...|.+|++.. ++||-|.+|.....|. +++..+ | ...|++
T Consensus 487 ~~~STt~afvr~l~~L~r~~~~g~riVpi~pDeartfgm----~g~f~~~gIy~~~gq~y~p~d~~~~~~y~e~~~Gq~l 562 (885)
T TIGR00759 487 REVSTTMAFVRILNKLLKDKEIGKRIVPIVPDEARTFGM----EGLFRQIGIYSPHGQTYTPVDADSLLAYKESKDGQIL 562 (885)
T ss_pred CCccHHHHHHHHHHHHhcCcccccceeecCCCccccCCh----HHhhcccCccCCCCccCCccchhhhhhcccCCCCcch
Confidence 67999999999999999853 7799999998764332 121111 1 136999
Q ss_pred eccchhHHHHHH--HHHHHhc--C--CeeEEEecchhH-HHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCC--CC
Q 015415 138 DTPIAENSFTGM--GIGAAMT--G--LRPIVEGMNMGF-LLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVG--RQ 207 (407)
Q Consensus 138 ~~GIaE~~~vg~--A~GlA~~--G--~rp~~~t~~~~f-~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~--~~ 207 (407)
+.||+|.++++. |+|.|.+ | +.||.. +|+.| .+|..|.+ ..+|.+ ...-++++ ++|.+ .+
T Consensus 563 e~GI~E~g~~~~~~aagtsys~~g~~miP~yi-~YsmFgfqR~gD~~-waa~d~--------~argfl~g~taGrtTL~g 632 (885)
T TIGR00759 563 QEGINEAGAMASWIAAATSYATHGEPMIPFYI-YYSMFGFQRIGDLC-WAAADQ--------RARGFLLGATAGRTTLNG 632 (885)
T ss_pred hhhhhhHHHHHHHHHHHhHHhhCCCeeeeeeE-eeccccccchHHHH-HHHhhh--------cCCceEeccCCCcccCCC
Confidence 999999999886 5666555 5 588886 56666 99999987 567776 45544454 67763 45
Q ss_pred CCcCccchHH--HHHccCCCcEEEeeCCHHHHHHHHHHHHhc----CCCEEEeecc--ccccCCCCCCCc-cccccCCce
Q 015415 208 LGAEHSQRLE--SYFQSIPGIQMVACSTPYNAKGLMKAAIRS----ENPVILFEHV--LLYNLKERIPDE-EYICNLEEA 278 (407)
Q Consensus 208 ~G~tHsq~~e--a~~~~iPgl~V~~P~d~~e~~~~~~~a~~~----~~Pv~ir~~r--~~y~~~~~v~~~-~~~~~~Gk~ 278 (407)
.|.+| |+-. .+...+||+.-|.|+-..|+..++.+.++. ...+|++++. ..|... ..++. ...+-.| .
T Consensus 633 EGlqH-qdg~s~~~~~~~P~~~~ydPafa~Ela~i~~~g~~rm~~~~~~v~yylt~~ne~~~qp-~~p~~~~egIlkG-~ 709 (885)
T TIGR00759 633 EGLQH-EDGHSLLQAATIPNCIAYDPAFAYEVAVIMEDGLRRMYGEQEDVFYYVTVMNENYVQP-PMPEGAEEGILKG-L 709 (885)
T ss_pred ccccC-ccccchHHHhcCCCceeecCchHHHHHHHHHHHHHHHhhCCCCEEEEEEecCCCCCCC-CCCcchHHhHHhC-c
Confidence 67788 5443 466789999999999999999999888763 5678877665 223211 11211 0112223 3
Q ss_pred EEeec------CCcEEEEEechhHHHHHHHHHHHhhC-CCCceEEEecccccCchhhH-------------------HHH
Q 015415 279 EMVRP------GEHVTILTYSRMRYHVMQAAKTLVNK-GYDPEVIDIRSLKPFDLYTI-------------------GNS 332 (407)
Q Consensus 279 ~vl~e------G~dv~Iia~G~~~~~al~Aa~~L~~~-Gi~v~VI~~~~l~Pfd~~~l-------------------~~~ 332 (407)
+.+++ +.++.|+++|..+.+|++|++.|+++ |+.++|+++++.+-|..+.. .+.
T Consensus 710 Y~l~~~~~~~~~~~VqLlgSG~il~evl~Aa~lL~~~~gV~adVwSvTS~~eL~Rd~~~~eR~n~lhP~~~~r~~~v~~~ 789 (885)
T TIGR00759 710 YRFETSTEEKAKGHVQLLGSGAIMRAVIEAAQLLAADWGVASDVWSVTSFTELARDGHDVERWNLLHPTETPRVSYVAQV 789 (885)
T ss_pred eecccCCCCCCCccEEEEeccHHHHHHHHHHHHHHHHHCCCCcEEECCCHHHHHHhHHHHHHHHhcCCCCCccccHHHHH
Confidence 44443 24799999999999999999999987 99999999999877766532 222
Q ss_pred Hhc-CCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCH--HHHHHHcCCCHHHHHHHHHHHh
Q 015415 333 IKK-THRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYA--GTLEEWTVVQPAQIVTAVEQLC 406 (407)
Q Consensus 333 ~~~-~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~--~~l~~~~gl~~~~I~~~i~~ll 406 (407)
+.. .+.||++-|... -+...|..+ .+.++..+|. |.|+.+. +.|+++|++|.+.|+.++.+.|
T Consensus 790 L~~~~gP~va~tDy~~--~~~~qir~~--------vp~~~~~LGt-DgFGrSdtr~~lr~~fevDa~~IV~AAL~aL 855 (885)
T TIGR00759 790 LNEADAPVIASTDYVR--AFAEQIRPY--------VPRKYVTLGT-DGFGRSDTRENLRHFFEVDAKSVVLAALYAL 855 (885)
T ss_pred hccCCCCEEEEccchh--hhHHHHhhh--------cCCCceEecC-CCCCCCCCHHHHHHHcCCCHHHHHHHHHHHH
Confidence 322 346777777653 133334333 3567888998 7888763 7899999999999999998775
No 46
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=99.60 E-value=2.2e-13 Score=142.04 Aligned_cols=244 Identities=21% Similarity=0.223 Sum_probs=171.7
Q ss_pred CceEeccchhHHHHHHHHHHHhcCCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCCcCc-
Q 015415 134 LRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGAEH- 212 (407)
Q Consensus 134 ~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G~tH- 212 (407)
+-+++++.+|.-++.+|+|++..|.|..+. |-...+.++.|.+++ ++|.. .+=-++++ ++.|..-|
T Consensus 58 ~vy~e~s~NEkvA~e~a~GA~~~G~ral~~-mKhVGlNvAsDpl~s-~ay~G------v~GGlviv-----~aDDpg~~S 124 (640)
T COG4231 58 DVYFEWSLNEKVALETAAGASYAGVRALVT-MKHVGLNVASDPLMS-LAYAG------VTGGLVIV-----VADDPGMHS 124 (640)
T ss_pred cEEEEecccHHHHHHHHHHhhhcCceeeEE-ecccccccchhhhhh-hhhcC------ccccEEEE-----EccCCCccc
Confidence 789999999999999999999999999997 788999999999974 66642 22334443 34444455
Q ss_pred cchHH--HHHccCCCcEEEeeCCHHHHHHHHHHHHh----cCCCEEEeeccccccCC----------CCCCCcc-ccc-c
Q 015415 213 SQRLE--SYFQSIPGIQMVACSTPYNAKGLMKAAIR----SENPVILFEHVLLYNLK----------ERIPDEE-YIC-N 274 (407)
Q Consensus 213 sq~~e--a~~~~iPgl~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~~r~~y~~~----------~~v~~~~-~~~-~ 274 (407)
||.-+ -++.....+-|+.|+|+||++++++.+++ ...||++|.....-... +.+...+ +.. .
T Consensus 125 Sqneqdsr~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~~h~~~~V~~~~~~~~~~~~~~~~~~k~ 204 (640)
T COG4231 125 SQNEQDSRAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRVSHSRGDVEVGLNRRPIVEPEDEFFIKD 204 (640)
T ss_pred ccchhHhHHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeeeccceeEEeccccCCCCccccccccCC
Confidence 34442 35555556669999999999999999997 36799998553221100 1111110 000 0
Q ss_pred CCce-------------------------------EEee--cCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEeccc
Q 015415 275 LEEA-------------------------------EMVR--PGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSL 321 (407)
Q Consensus 275 ~Gk~-------------------------------~vl~--eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l 321 (407)
.+++ ..+. +..++-||+.|.....+++|.+.| |++..++.+.+.
T Consensus 205 ~~r~V~~p~~~~~~~~~~l~~k~~a~~~~~~~~~~n~v~~~~~~~lGII~~G~ay~yVkeAl~~l---gl~~~~lklg~~ 281 (640)
T COG4231 205 PGRYVRVPANALRHRHRKLLEKWEAAEEFINANPLNRVEGSDDAKLGIIASGIAYNYVKEALEDL---GLDDELLKLGTP 281 (640)
T ss_pred ccceeecCcccchhhHHHHHHHHHHHHHHHhhCcccccccCCCCceEEEecCccHHHHHHHHHHc---CCCceeEEecCC
Confidence 1110 0111 236899999999999999997766 899999999999
Q ss_pred ccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCHHHHHHHcCCCHHHHHHH
Q 015415 322 KPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTA 401 (407)
Q Consensus 322 ~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~ 401 (407)
+|||++.+++.++.-++|+||||..+. +-.++.+.+.+.+ .++...|-.+.+.|-. .-+|++.|..+
T Consensus 282 ~Plp~~~i~~F~~g~~~vlVVEE~~P~--iE~qv~~~l~~~g-----~~v~v~GKd~gllP~~------GElt~~~i~~a 348 (640)
T COG4231 282 YPLPEQLIENFLKGLERVLVVEEGEPF--IEEQVKALLYDAG-----LPVEVHGKDEGLLPME------GELTPEKIANA 348 (640)
T ss_pred cCCCHHHHHHHHhcCcEEEEEecCCch--HHHHHHHHHHhcC-----CceEeecccccccCcc------cccCHHHHHHH
Confidence 999999999999999999999999863 6667777776642 3443344433333321 23688888888
Q ss_pred HHHHh
Q 015415 402 VEQLC 406 (407)
Q Consensus 402 i~~ll 406 (407)
|.+++
T Consensus 349 i~~~l 353 (640)
T COG4231 349 IAKFL 353 (640)
T ss_pred HHHHh
Confidence 87665
No 47
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=99.57 E-value=7e-13 Score=133.96 Aligned_cols=209 Identities=18% Similarity=0.218 Sum_probs=142.5
Q ss_pred CCceEeccchhHHHHHHHHHHHhcCCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe--cCCCCCCCCc
Q 015415 133 DLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG--PGGVGRQLGA 210 (407)
Q Consensus 133 p~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~--~~G~~~~~G~ 210 (407)
.-.|+++- +|.++++++.|++.+|.|.++.|..+. +..+.+.|- .++.+ .+|+|+.. ++|++.++ +
T Consensus 47 ~~~~vq~E-sE~~a~s~v~GA~~aGar~~TaTSg~G-l~Lm~E~l~-~a~~~--------~~P~Vi~~~~R~~ps~g~-p 114 (365)
T COG0674 47 GGVFVQME-SEIGAISAVIGASYAGARAFTATSGQG-LLLMAEALG-LAAGT--------ETPLVIVVAQRPLPSTGL-P 114 (365)
T ss_pred CcEEEEec-cHHHHHHHHHHHHhhCcceEeecCCcc-HHHHHHHHH-HHHhc--------cCCeEEEEeccCcCCCcc-c
Confidence 46788885 999999999999999999999986655 455778774 45554 89999887 45654333 2
Q ss_pred CccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----cCCCEEEeeccccccC--------------------CC--
Q 015415 211 EHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIR----SENPVILFEHVLLYNL--------------------KE-- 264 (407)
Q Consensus 211 tHsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~~r~~y~~--------------------~~-- 264 (407)
++...-|.+.....++.+++-+|.||+.++...|++ ...|++++.+...-.. ++
T Consensus 115 ~~~dq~D~~~~r~~g~~~~~~~s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~h~~~~v~~~~~~~~~~~~~~~~~~~ 194 (365)
T COG0674 115 IKGDQSDLMAARDTGFPILVSASVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLASHEYEKIELLEQDLPDEEIPDYEPYT 194 (365)
T ss_pred ccccHHHHHHHHccCceEEeeccHHHHHHHHHHHHHHHHHhcCCEEEeeccchhcCceeeeecCccccccccccccCccc
Confidence 331112222223338888888899999999888876 4779999855321000 00
Q ss_pred ------C-CCC----cccc----------c----------------cCCc----eEEee-cCCcEEEEEechhHHHHHHH
Q 015415 265 ------R-IPD----EEYI----------C----------------NLEE----AEMVR-PGEHVTILTYSRMRYHVMQA 302 (407)
Q Consensus 265 ------~-v~~----~~~~----------~----------------~~Gk----~~vl~-eG~dv~Iia~G~~~~~al~A 302 (407)
+ ++. .+.. . ..|. ..+.. ++++++||+||+....++++
T Consensus 195 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~~r~~~k~~~~~~~~~~~~~~~g~~DAe~viV~~Gss~~~~~~a 274 (365)
T COG0674 195 ALDPSPPVLPGTEAVPDAYVTGFEHDNAGYPAEDDVIKRALRKINELTGREYEPFLYYGYEDAEIVIVAMGSSKGSTAEA 274 (365)
T ss_pred ccCCCCCCcCCCCCCCceEEeeeeccccccccchHHHHHHHHHHHHHhcCCCccceeecCCCcCEEEEEeccchHhHHHH
Confidence 0 000 0000 0 0011 11111 57889999999888777777
Q ss_pred HHHH-hhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCccccchHH
Q 015415 303 AKTL-VNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGA 353 (407)
Q Consensus 303 a~~L-~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs 353 (407)
+..+ +++|++++++.+++++|||.+.|.+.+++++.+.|++-....|++++
T Consensus 275 ~~~~~~~~g~kvg~l~vr~~rPFp~~~i~~~l~~~~~~~Vl~~e~~~g~~~~ 326 (365)
T COG0674 275 VVDLLRDKGEKVGLLKVRTLRPFPAEEIREVLPKTNAVVVLDVEISLGGLAE 326 (365)
T ss_pred HHHHHHhcCceEEEEEEEEeCCCCHHHHHHHhcccceeEEEEEccCCccchh
Confidence 6655 58899999999999999999999999998876666666665677443
No 48
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=99.51 E-value=8.8e-12 Score=141.90 Aligned_cols=213 Identities=17% Similarity=0.215 Sum_probs=152.8
Q ss_pred ceEeccchhHHHHHHHHHHHhcCCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe--cCCCCC--CCCc
Q 015415 135 RVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG--PGGVGR--QLGA 210 (407)
Q Consensus 135 R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~--~~G~~~--~~G~ 210 (407)
.|+++- +|.++++++.|++.+|.|.++.|.. ..+..+.+.|.. ++-. ++|+|+.. ++|... ...+
T Consensus 53 ~~vq~E-sE~~A~~av~GA~~aGara~T~TSs-~GL~LM~e~l~~-~ag~--------~~P~Vi~va~R~~~~~~~~i~~ 121 (1165)
T TIGR02176 53 KVVEMQ-SEAGAAGAVHGALQTGALTTTFTAS-QGLLLMIPNMYK-IAGE--------LLPCVFHVSARAIAAHALSIFG 121 (1165)
T ss_pred eEEEcc-chHHHHHHHHhHhhcCCCEEEecCh-hHHHHHHHHHHH-HHhc--------cCCEEEEEecCCCCCCCCccCC
Confidence 578875 9999999999999999999999855 455667888743 3322 68999887 455432 2344
Q ss_pred CccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----cCCCEEEeeccccccCC----------------C------
Q 015415 211 EHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIR----SENPVILFEHVLLYNLK----------------E------ 264 (407)
Q Consensus 211 tHsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~~r~~y~~~----------------~------ 264 (407)
.|+ .+ +...--|+.+++|+|.||+.++...|++ ...||+++.+....... +
T Consensus 122 dh~-Dv--~~~R~~G~ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~tsh~~~~v~~~~~~~v~~~~~~~~~~~ 198 (1165)
T TIGR02176 122 DHQ-DV--MAARQTGFAMLASSSVQEVMDLALVAHLATIEARVPFMHFFDGFRTSHEIQKIEVLDYEDMASLVNQELVAA 198 (1165)
T ss_pred Cch-HH--HHhhcCCeEEEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCceeccccccccCCCHHHHHhhcChhhccc
Confidence 563 22 2334457899999999999999888876 57899987653211000 0
Q ss_pred ----CCC-----------Ccc-cc----------------c---------cCCc----eEEe-ecCCcEEEEEechhHHH
Q 015415 265 ----RIP-----------DEE-YI----------------C---------NLEE----AEMV-RPGEHVTILTYSRMRYH 298 (407)
Q Consensus 265 ----~v~-----------~~~-~~----------------~---------~~Gk----~~vl-~eG~dv~Iia~G~~~~~ 298 (407)
.+. +.+ +. + -.|+ .+.. .++++.+||++|+....
T Consensus 199 ~~~~~l~~~~p~~~G~~~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~gr~y~~~e~yg~~dAe~ViV~~GS~~~~ 278 (1165)
T TIGR02176 199 FRKRSMNPEHPHVRGTAQNPDIYFQGREAVNPYYLAVPGIVQKYMDKIAKLTGRSYHLFDYYGAPDAERVIIAMGSVAET 278 (1165)
T ss_pred ccccccCCCCCceeCCCCCcchhhhhHHHHHHHHhhhHHHHHHHHHHHHHHhCCccCcceecCCCCCCEEEEEeCCCHHH
Confidence 000 000 00 0 0121 1111 24689999999999999
Q ss_pred HHHHHHHHhhCCCCceEEEecccccCchhhHHHHH-hcCCcEEEEecCcccc----chHHHHHHHHHh
Q 015415 299 VMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSI-KKTHRVLIVEECMRTG----GIGASLTAAITE 361 (407)
Q Consensus 299 al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~-~~~~~vvvvEe~~~~G----GlGs~I~~~l~e 361 (407)
+++|++.|+++|++|++|.+++++|||.+.|.+.+ +..++|+|+|.+...| -|..+|...+..
T Consensus 279 ~~eav~~Lr~~G~kVGli~vr~~rPFp~e~l~~aLp~svK~I~Vler~~~~g~~g~pL~~DV~~al~~ 346 (1165)
T TIGR02176 279 IEETVDYLNAKGEKVGLLKVRLYRPFSAETFFAALPKSVKRIAVLDRTKEPGAAGEPLYLDVVSAFYE 346 (1165)
T ss_pred HHHHHHHHHhcCCceeEEEEeEeCCCCHHHHHHHHHhcCCEEEEEECCCCCCcccChHHHHHHHHHhh
Confidence 99999999999999999999999999999999988 4679999999996433 377788877764
No 49
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=99.34 E-value=1.3e-10 Score=121.84 Aligned_cols=296 Identities=16% Similarity=0.155 Sum_probs=198.4
Q ss_pred CcccchHHHHHHHHHHHHhhhC---CCEEEEeCCCCCCCCccccchhhhh----------hhC--------------CCc
Q 015415 83 QGHELLLFEALREGLEEEMDRD---PHVCVMGEDVGHYGGSYKVTKGLAD----------KYG--------------DLR 135 (407)
Q Consensus 83 ~~~~~~~r~a~~~~L~~l~~~d---~~vvvi~aDl~~~~g~~~~~~~~~~----------~fg--------------p~R 135 (407)
.++++++..||...|.++++.+ ++||-+.+|.....|. +++.. +|- ..+
T Consensus 488 ~g~~iSTtmAfvr~l~~llkdk~ig~riVpiipDearTfgm----eg~f~q~GIy~~~GQ~y~p~d~~~~~~ykea~~GQ 563 (887)
T COG2609 488 QGEEISTTMAFVRILNELLKDKEIGKRIVPIIPDEARTFGM----EGLFRQIGIYNPNGQQYTPQDRDQVMYYKEAESGQ 563 (887)
T ss_pred cCccchhHHHHHHHHHHHHhccccCCccccccCchhhhccc----hhhhhhcccccCCCccCCccchhhhhhhhhCCCcc
Confidence 3557999999999999999943 7789999998753322 11111 111 358
Q ss_pred eEeccchhHHHHHH--HHHHHhc--C--CeeEEEecchhH-HHHHHHHHHHhhhhhchhcCCccccc-EEEEecCC-CC-
Q 015415 136 VLDTPIAENSFTGM--GIGAAMT--G--LRPIVEGMNMGF-LLLAFNQISNNCGMLHYTSGGQFTIP-IVIRGPGG-VG- 205 (407)
Q Consensus 136 ~i~~GIaE~~~vg~--A~GlA~~--G--~rp~~~t~~~~f-~~ra~dqi~~~~a~~~~~~gg~~~lp-vvi~~~~G-~~- 205 (407)
.++-||+|.++++. |+|.+.. | +.||.- +|+.| .+|..|.+ +.+|.+ ..- .++.+..| .+
T Consensus 564 iLqeGInE~ga~~sw~AagtSys~~~~pmiPfyi-~YsmFgfqRigD~~-waA~dq--------~ARgFLlgaTagrtTL 633 (887)
T COG2609 564 ILQEGINEAGAFASWIAAGTSYSTHGEPMIPFYI-YYSMFGFQRIGDLL-WAAGDQ--------DARGFLLGATAGRTTL 633 (887)
T ss_pred hHHhhhccccHHHHHHHHhcccccCCccceeeee-eechhhhhhHHHHH-HHHHhh--------hhcceeEeecCCCcee
Confidence 89999999999886 6666555 4 578875 56656 99999976 678887 343 44444433 32
Q ss_pred CCCCcCccchHH--HHHccCCCcEEEeeCCHHHHHHHHHHHHhc-------CCCEEEeeccccccCCCCCCCc-cccccC
Q 015415 206 RQLGAEHSQRLE--SYFQSIPGIQMVACSTPYNAKGLMKAAIRS-------ENPVILFEHVLLYNLKERIPDE-EYICNL 275 (407)
Q Consensus 206 ~~~G~tHsq~~e--a~~~~iPgl~V~~P~d~~e~~~~~~~a~~~-------~~Pv~ir~~r~~y~~~~~v~~~-~~~~~~ 275 (407)
.+.|..| ++-. -+-..+||+.-+.|+-+.|+.-++...++. +.-.||++....|+. |.-|.+ +..+..
T Consensus 634 ngEGlqH-edghS~l~~~~ip~~~tYdPafayEvAVI~~~g~~rmy~~~qe~v~yYlt~~ne~~~q-Pamp~gae~gI~k 711 (887)
T COG2609 634 NGEGLQH-EDGHSHLQAMTIPNCISYDPAFAYEVAVIMQDGLRRMYGEGQENVFYYITLSNENYPQ-PAMPEGAEEGIIK 711 (887)
T ss_pred Ccccccc-ccccchhhhhcCCCccccCchHHHHHHHHHHHHHHHHhccCcCCcEEEEEeccCcCCC-CCCCCcchhhhhh
Confidence 3556677 4333 234569999999999999999999988872 224566544333432 111111 112222
Q ss_pred CceEEee---c--CCcEEEEEechhHHHHHHHHHHHhh-CCCCceEEEecccccCchh-------------------hHH
Q 015415 276 EEAEMVR---P--GEHVTILTYSRMRYHVMQAAKTLVN-KGYDPEVIDIRSLKPFDLY-------------------TIG 330 (407)
Q Consensus 276 Gk~~vl~---e--G~dv~Iia~G~~~~~al~Aa~~L~~-~Gi~v~VI~~~~l~Pfd~~-------------------~l~ 330 (407)
| .+.++ + +.++.|+++|....+|++|++.|++ .|+.+.|..+++..-|..+ .+.
T Consensus 712 G-~Y~l~~~~~~~~~~vqll~SGai~~ea~~AaelL~~d~gv~adl~svtS~~eL~rdg~a~~R~n~lhP~~~~~v~yv~ 790 (887)
T COG2609 712 G-IYKLETPGGQGKAKVQLLGSGAILREALEAAELLAKDYGVEADLWSVTSFDELARDGQAAERWNLLHPTETPRVPYVA 790 (887)
T ss_pred c-eeEeecCCCCCCceEEEEecchhHHHHHHHHHHHhhccccccCeeecccHHHHhcchHHHHHHHhcCCCCCCCchHHH
Confidence 3 23332 1 4689999999999999999999988 6999999999987655433 233
Q ss_pred HHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCH--HHHHHHcCCCHHHHHHHHHHHh
Q 015415 331 NSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYA--GTLEEWTVVQPAQIVTAVEQLC 406 (407)
Q Consensus 331 ~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~--~~l~~~~gl~~~~I~~~i~~ll 406 (407)
..+.....+|.+-|.... .++++.. ..+.....+|. |.|+.+. +.|+++|.+|...|+.++...|
T Consensus 791 ~~L~~~~p~Va~tDy~~~------~a~qir~----~vp~~y~vLGt-dgFGrSdsr~~Lr~~fevDa~~vv~Aal~~L 857 (887)
T COG2609 791 QVLNADGPVVAVTDYMKL------FAEQIRA----VVPQRYRVLGT-DGFGRSDSRENLRRFFEVDAYYVVVAALSAL 857 (887)
T ss_pred HHhccCCCeEEechhhHh------HHHHHhc----ccCCeeEEecc-CCCCccCcHHHHHHHhccchHHHHHHHHHHH
Confidence 444434556666666542 2333322 13455667777 7787763 7899999999999999887765
No 50
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=99.33 E-value=6.3e-11 Score=133.46 Aligned_cols=245 Identities=11% Similarity=0.023 Sum_probs=162.2
Q ss_pred ceEeccchhHHHHHHHHHHH---------hcCCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCC
Q 015415 135 RVLDTPIAENSFTGMGIGAA---------MTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVG 205 (407)
Q Consensus 135 R~i~~GIaE~~~vg~A~GlA---------~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~ 205 (407)
-++++++.|.-++.++.|.+ ..|.+.+|+ +-...+.++.|.+++ +.+. |..-+=-++++ .
T Consensus 75 i~~e~~~NEkvA~e~a~Gaq~~~~~~~~~~~Gv~~l~~-~K~~GvnvaaD~l~~-~n~~----G~~~~GG~v~v-----~ 143 (1159)
T PRK13030 75 IRFLPGINEELAATAVLGTQQVEADPERTVDGVFAMWY-GKGPGVDRAGDALKH-GNAY----GSSPHGGVLVV-----A 143 (1159)
T ss_pred eEEeecCCHHHHHHHHHHhccccccCCccccceEEEEe-cCcCCcccchhHHHH-HHhh----cCCCCCcEEEE-----E
Confidence 79999999999999999999 667777997 688899999999974 4433 11112234443 2
Q ss_pred CCCCcCcc-chHH-----HHHccCCCcEEEeeCCHHHHHHHHHHHHh----cCCCEEEeecccccc--------C-C--C
Q 015415 206 RQLGAEHS-QRLE-----SYFQSIPGIQMVACSTPYNAKGLMKAAIR----SENPVILFEHVLLYN--------L-K--E 264 (407)
Q Consensus 206 ~~~G~tHs-q~~e-----a~~~~iPgl~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~~r~~y~--------~-~--~ 264 (407)
|.|...|| |... ..+..+| |+.|+|++|++++.++++. +..||.++....... . . .
T Consensus 144 gDDpg~~SSq~eqdSr~~~~~a~iP---vl~Ps~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v~h~~~~V~~~~~~~~~ 220 (1159)
T PRK13030 144 GDDHGCVSSSMPHQSDFALIAWHMP---VLNPANVQEYLDFGLYGWALSRYSGAWVGFKAISETVESGSTVDLDPDRTRW 220 (1159)
T ss_pred ecCCCCccCcCHHHHHHHHHHcCCc---eeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccC
Confidence 34433442 2221 4555566 9999999999999999987 367999984321110 0 0 0
Q ss_pred CCCCcccc---------c--------------------------cCCceEEeecCCcEEEEEechhHHHHHHHHHHHhhC
Q 015415 265 RIPDEEYI---------C--------------------------NLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNK 309 (407)
Q Consensus 265 ~v~~~~~~---------~--------------------------~~Gk~~vl~eG~dv~Iia~G~~~~~al~Aa~~L~~~ 309 (407)
..+ .++. + ++.+..+-.++.++.||++|.....++||.+.|..+
T Consensus 221 ~~~-~~f~~~~~~~~~r~~~~p~~~~~~~~~~rl~~~~~~~~~~~ln~~~~~~~~~~iGIItsG~ay~~v~EAL~~Lgl~ 299 (1159)
T PRK13030 221 PAP-EDFTPPAGGLHNRWPDLPSLAIEARLAAKLPAVRAFARANSIDRWVAPSPDARVGIVTCGKAHLDLMEALRRLGLD 299 (1159)
T ss_pred CCc-cccCCCcccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEEEEeCccHHHHHHHHHHcCCC
Confidence 001 0010 0 122111112246799999999999999999998554
Q ss_pred CC-----CceEEEecccccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCC----C
Q 015415 310 GY-----DPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDV----P 380 (407)
Q Consensus 310 Gi-----~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~----~ 380 (407)
++ .+.|+.+...+|||.+.|.+.+++.+.|+||||... =+-.+|.+.+.+.. ...+...+|..|. .
T Consensus 300 ~~~~~~lgirilKvgm~~PL~~~~i~~F~~g~d~VlVVEE~~p--~iE~Qlk~~l~~~~---~~~~~~v~GK~~~~G~pl 374 (1159)
T PRK13030 300 DADLRAAGIRIYKVGLSWPLEPTRLREFADGLEEILVIEEKRP--VIEQQIKDYLYNRP---GGARPRVVGKHDEDGAPL 374 (1159)
T ss_pred cccccccCccEEEeCCccCCCHHHHHHHHhcCCEEEEEeCCch--HHHHHHHHHHHhcc---ccCCceeEEEECCCCCcC
Confidence 42 367888889999999999999999999999999975 25566777766543 1112334555442 2
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHHHH
Q 015415 381 TPYAGTLEEWTVVQPAQIVTAVEQL 405 (407)
Q Consensus 381 ~~~~~~l~~~~gl~~~~I~~~i~~l 405 (407)
.|. ...++++.|.+++.+.
T Consensus 375 lp~------~gEl~~~~v~~~l~~~ 393 (1159)
T PRK13030 375 LSE------LGELRPSLIAPVLAAR 393 (1159)
T ss_pred CCC------cCCcCHHHHHHHHHHH
Confidence 232 1236788877777554
No 51
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=99.25 E-value=7.8e-11 Score=103.92 Aligned_cols=115 Identities=27% Similarity=0.316 Sum_probs=87.4
Q ss_pred hhCCCceEeccchhHHHHHHHHHHHhcCCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec-CCCCCCC
Q 015415 130 KYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGVGRQL 208 (407)
Q Consensus 130 ~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~~~~~ 208 (407)
+. +++.+..++.|++++++|.|+|+.|.+|++.+.+..++..++++|. +++.. ++||+++.. .+..+..
T Consensus 32 ~~-~~~~~~~~~~E~~a~~~A~G~a~~~~~~v~~~~~gpg~~~~~~~l~-~a~~~--------~~Pvl~i~~~~~~~~~~ 101 (154)
T cd06586 32 EG-DKRIIDTVIHELGAAGAAAGYARAGGPPVVIVTSGTGLLNAINGLA-DAAAE--------HLPVVFLIGARGISAQA 101 (154)
T ss_pred cc-CCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCCcHHHHHHHHH-HHHhc--------CCCEEEEeCCCChhhhc
Confidence 45 7899999999999999999999998899888776777889999998 55554 799999974 3443334
Q ss_pred CcCccchH--HHHHccCCCcEEEeeCCHHHHHHHHHHHH----hcCCCEEEeec
Q 015415 209 GAEHSQRL--ESYFQSIPGIQMVACSTPYNAKGLMKAAI----RSENPVILFEH 256 (407)
Q Consensus 209 G~tHsq~~--ea~~~~iPgl~V~~P~d~~e~~~~~~~a~----~~~~Pv~ir~~ 256 (407)
+.+| |.. ..+++.+|++.+..|++.++...+ ..++ ..++||+|+++
T Consensus 102 ~~~~-q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~a~~~~gPv~l~ip 153 (154)
T cd06586 102 KQTF-QSMFDLGMYRSIPEANISSPSPAELPAGI-DHAIRTAYASQGPVVVRLP 153 (154)
T ss_pred cCcc-cccCHHHHHHHhhheEEEeCCHHHHHHHH-HHHHHHHhcCCCCEEEEcc
Confidence 4556 443 389999999988887776555443 3343 34679999755
No 52
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=99.24 E-value=3.7e-10 Score=127.02 Aligned_cols=243 Identities=15% Similarity=0.061 Sum_probs=162.3
Q ss_pred CceEeccchhHHHHHHH---------HHHHhcCCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCC
Q 015415 134 LRVLDTPIAENSFTGMG---------IGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGV 204 (407)
Q Consensus 134 ~R~i~~GIaE~~~vg~A---------~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~ 204 (407)
+-+|++++.|.-++.++ .|.+..|.+.+|+ +-...+.|+.|.+++ +.+. |-.-+=-++++
T Consensus 82 ~i~fe~~~NEkvAae~~~GsQ~~~~~~~a~~~Gv~~l~y-~K~pGvn~aaD~l~~-~n~~----G~~~~GGvv~v----- 150 (1165)
T PRK09193 82 DIVFQPGLNEDLAATAVWGSQQVNLFPGAKYDGVFGMWY-GKGPGVDRSGDVFRH-ANAA----GTSPHGGVLAL----- 150 (1165)
T ss_pred ceEEeeccCHHHHHHHHhhhcccccccceeeccceEEEe-cCcCCccccHhHHHH-HHhh----cCCCCCcEEEE-----
Confidence 38999999999999999 7779999999998 688999999999985 3332 11112234443
Q ss_pred CCCCCcCcc-c----hHH-HHHccCCCcEEEeeCCHHHHHHHHHHHHh----cCCCEEEeecccccc--------C---C
Q 015415 205 GRQLGAEHS-Q----RLE-SYFQSIPGIQMVACSTPYNAKGLMKAAIR----SENPVILFEHVLLYN--------L---K 263 (407)
Q Consensus 205 ~~~~G~tHs-q----~~e-a~~~~iPgl~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~~r~~y~--------~---~ 263 (407)
.|.|...|| | +-- ..+..+| |+.|+|+||++++.++++. +..||.++....... . .
T Consensus 151 ~gDDpg~~SSq~eqdSr~~~~~a~iP---vl~Ps~~qE~~d~~~~g~~lSr~~g~pV~lr~~t~v~h~~~~V~~~~~~~~ 227 (1165)
T PRK09193 151 AGDDHAAKSSTLPHQSEHAFKAAGMP---VLFPANVQEILDYGLHGWAMSRYSGLWVGMKTVTDVVESSASVDVDPDRVQ 227 (1165)
T ss_pred EecCCCCccccchhhhHHHHHHcCCc---eeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCccc
Confidence 233333332 2 221 4555566 9999999999999999987 367999984321110 0 0
Q ss_pred CCCCCcccccc-----------------------------------CCceEEeecCCcEEEEEechhHHHHHHHHHHHhh
Q 015415 264 ERIPDEEYICN-----------------------------------LEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVN 308 (407)
Q Consensus 264 ~~v~~~~~~~~-----------------------------------~Gk~~vl~eG~dv~Iia~G~~~~~al~Aa~~L~~ 308 (407)
...+ .++..+ +.+..+-.++.++-||++|.....+++|.+.|
T Consensus 228 ~~~~-~~f~~~~~g~~~r~~~~p~~~~~~~~~~rl~a~~a~a~~n~ln~~~~~~~~~~iGIItsG~~y~~v~eal~~l-- 304 (1165)
T PRK09193 228 IVLP-EDFEMPPGGLNIRWPDPPLEQEARLLDYKLYAALAYARANKLDRVVIDSPNARLGIVAAGKAYLDVRQALRDL-- 304 (1165)
T ss_pred CCCc-ccccCCcccccccCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCCCCCEEEEecCccHHHHHHHHHHc--
Confidence 0011 111111 11111111246799999999999999998877
Q ss_pred CCCC--------ceEEEecccccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCC-
Q 015415 309 KGYD--------PEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDV- 379 (407)
Q Consensus 309 ~Gi~--------v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~- 379 (407)
|++ +.|+.+-..+|||.+.|++.+++.+.|+||||-.. =+-.+|.+.+.+.. ...+...+|-.|.
T Consensus 305 -g~~~~~~~~~gi~ilKvgm~~PL~~~~i~~Fa~g~~~vlVVEE~~p--~iE~qlk~~l~~~~---~~~rp~v~GK~~~~ 378 (1165)
T PRK09193 305 -GLDEETAARLGIRLYKVGMVWPLEPQGVRAFAEGLDEILVVEEKRQ--IIEYQLKEELYNWP---DDVRPRVIGKFDPQ 378 (1165)
T ss_pred -CCChhhhcccCCCEEEeCCCCCCCHHHHHHHHhcCCEEEEEecCch--HHHHHHHHHHhhcc---CCcCceeEeeeCCC
Confidence 554 89999999999999999999999999999999875 36667777766543 2222234565441
Q ss_pred ---CCCCHHHHHHHcCCCHHHHHHHHHHH
Q 015415 380 ---PTPYAGTLEEWTVVQPAQIVTAVEQL 405 (407)
Q Consensus 380 ---~~~~~~~l~~~~gl~~~~I~~~i~~l 405 (407)
..|. ...++++.|.+++.+.
T Consensus 379 g~~llp~------~gEl~~~~va~~l~~~ 401 (1165)
T PRK09193 379 GNWLLPA------HGELSPAIIAKAIARR 401 (1165)
T ss_pred CCccCCC------cCCcCHHHHHHHHHHH
Confidence 2232 1236777777777554
No 53
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=99.21 E-value=5.7e-10 Score=125.41 Aligned_cols=248 Identities=15% Similarity=0.075 Sum_probs=161.6
Q ss_pred CceEeccchhHHH---------HHHHHHHHhcCCeeEEEecchhHHHHHHHHHHHhhh-hhchhcCCcccccEEEEecCC
Q 015415 134 LRVLDTPIAENSF---------TGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCG-MLHYTSGGQFTIPIVIRGPGG 203 (407)
Q Consensus 134 ~R~i~~GIaE~~~---------vg~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a-~~~~~~gg~~~lpvvi~~~~G 203 (407)
+-++++++.|.-+ +.++.|.+..|.+.+|+ +-...+.|+-|.+++... +.. .+=-++++
T Consensus 85 ~i~fe~~~NEklAatav~Gsq~~e~~~~a~~dGv~~lwy-gK~pGvn~aaD~l~h~n~~gt~------~~GGvv~v---- 153 (1186)
T PRK13029 85 DVVFQPGVNEELAATAVWGSQQLELDPGAKRDGVFGMWY-GKGPGVDRSGDALRHANLAGTS------PLGGVLVL---- 153 (1186)
T ss_pred ceEEeecCCHHHHHHHhhhhhhcccccceeeccceEEEe-cCcCCcccchhHHHHhhccccC------CCCcEEEE----
Confidence 3789999999999 77777778899999998 688899999999985431 221 12234443
Q ss_pred CCCCCCcCcc-chH----H-HHHccCCCcEEEeeCCHHHHHHHHHHHHh----cCCCEEEeecccccc--------C-C-
Q 015415 204 VGRQLGAEHS-QRL----E-SYFQSIPGIQMVACSTPYNAKGLMKAAIR----SENPVILFEHVLLYN--------L-K- 263 (407)
Q Consensus 204 ~~~~~G~tHs-q~~----e-a~~~~iPgl~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~~r~~y~--------~-~- 263 (407)
.|.|...|| |.. - .....+| |+.|+|++|++++..+++. +..||.++....... . .
T Consensus 154 -~gDDpg~~SSq~eqdSr~~~~~a~iP---vl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~~t~v~~s~~~V~~~~~r~ 229 (1186)
T PRK13029 154 -AGDDHGAKSSSVAHQSDHTFIAWGIP---VLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTEVVESTASVDLDPDRV 229 (1186)
T ss_pred -EecCCCCccccCHHHHHHHHHHcCCc---eeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEeeeeeecceeeecCCccc
Confidence 233333342 222 1 4555566 9999999999999999987 367999984322111 0 0
Q ss_pred -CCCCCccccc-----------------------------------cCCceEEeecCCcEEEEEechhHHHHHHHHHHHh
Q 015415 264 -ERIPDEEYIC-----------------------------------NLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLV 307 (407)
Q Consensus 264 -~~v~~~~~~~-----------------------------------~~Gk~~vl~eG~dv~Iia~G~~~~~al~Aa~~L~ 307 (407)
...+ .++.. ++.+..+-.++.++-||++|.....+++|.+.|
T Consensus 230 ~~~~p-~~f~~~~~g~~~r~~~~p~~~e~~~~~~kl~a~~a~a~~n~ln~~~~~~~~~~~GIItsG~~y~~v~eAl~~l- 307 (1186)
T PRK13029 230 DIVLP-DDFVLPPGGLHIRWPDDPLAQEERMLEFKWYAALAYVRANRLNRLVIDGPNPRLGIIAAGKAYLDVRQALRDL- 307 (1186)
T ss_pred ccCCc-ccccCCccccccccCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEEeccCCCCCEEEEecCccHHHHHHHHHHc-
Confidence 0011 01110 112111112246799999999999999998877
Q ss_pred hCCCC--------ceEEEecccccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCC
Q 015415 308 NKGYD--------PEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDV 379 (407)
Q Consensus 308 ~~Gi~--------v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~ 379 (407)
|++ +.|+.+-..+|||.+.+++.++..+.|+||||-.. =+-.+|.+.+.+.. ...+...+|-.|.
T Consensus 308 --gl~~~~~~~~gi~ilKvgm~~PL~~~~i~~Fa~g~d~vlVVEE~~p--~iE~qlk~~l~~~~---~~~rp~v~GK~~~ 380 (1186)
T PRK13029 308 --GLDDATCAALGIRLLKVGCVWPLDPQSVREFAQGLEEVLVVEEKRA--VIEYQLKEELYNWR---EDVRPAIFGKFDH 380 (1186)
T ss_pred --CCChhhccccCCCEEEeCCCCCCCHHHHHHHHhcCCEEEEEecCch--HHHHHHHHHHhhcc---CCcCCeeEecccc
Confidence 444 88999999999999999999999999999999975 36667777776543 1222234565440
Q ss_pred --------CCCCH-HHHHHHcCCCHHHHHHHHHHH
Q 015415 380 --------PTPYA-GTLEEWTVVQPAQIVTAVEQL 405 (407)
Q Consensus 380 --------~~~~~-~~l~~~~gl~~~~I~~~i~~l 405 (407)
..+.+ ..+-....++++.|.+++.+.
T Consensus 381 ~~~~~~~~~~~~g~~llp~~gEL~p~~va~~l~~~ 415 (1186)
T PRK13029 381 RDGAGGEWSVPAGRWLLPAHAELSPALIAKAIARR 415 (1186)
T ss_pred cccccccccccccCCCCCcccCcCHHHHHHHHHHH
Confidence 00000 111122347788887777554
No 54
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.10 E-value=7.7e-09 Score=112.59 Aligned_cols=287 Identities=16% Similarity=0.218 Sum_probs=203.2
Q ss_pred cccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccc----------------cchhhhhhhCCCceEeccchhHHHH
Q 015415 84 GHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYK----------------VTKGLADKYGDLRVLDTPIAENSFT 147 (407)
Q Consensus 84 ~~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~----------------~~~~~~~~fgp~R~i~~GIaE~~~v 147 (407)
...++|.-+--.++-.|+.+...|-+-|.|... |+|. -+..|.+..+.--++|..++|-+++
T Consensus 884 ~g~iDWa~gEllAfGsLl~eG~~VRL~GQDsrR--GTF~QRHavl~D~~tg~e~~Pl~~l~~~q~~f~vydS~LSEyAa~ 961 (1228)
T PRK12270 884 EGGIDWAFGELLAFGSLLLEGTPVRLSGQDSRR--GTFSQRHAVLIDRETGEEYTPLQNLSDDQGKFLVYDSLLSEYAAM 961 (1228)
T ss_pred cCCccHHHHHHHHHHHHHhcCceeeeeccccCC--cceeeeeEEEecCCCCcccCcHhhcCCCcceEEEecchhhHHHhh
Confidence 446777666666777899999999999999864 3442 2234443333336789999999999
Q ss_pred HHHHHHHhc--CCeeEEEecchhHH---HHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCCcCccc-hHHH--H
Q 015415 148 GMGIGAAMT--GLRPIVEGMNMGFL---LLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHSQ-RLES--Y 219 (407)
Q Consensus 148 g~A~GlA~~--G~rp~~~t~~~~f~---~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G~tHsq-~~ea--~ 219 (407)
|+-+|.+.+ ...++|+.+|.+|. |-..|+++. .+.++| | ++-.||+..|.|.- +.||-||. .+|- -
T Consensus 962 GFEYGYSv~~pdaLVlWEAQFGDF~NGAQtiIDefIs-s~e~KW--g--Q~S~vvlLLPHGyE-GQGPdHSSaRiERfLq 1035 (1228)
T PRK12270 962 GFEYGYSVERPDALVLWEAQFGDFANGAQTIIDEFIS-SGEAKW--G--QRSGVVLLLPHGYE-GQGPDHSSARIERFLQ 1035 (1228)
T ss_pred ccceeeecCCCcceeeehhhhcccccchHHHHHHHHh-hhHhhh--c--cccceEEEccCCcC-CCCCCcchHHHHHHHH
Confidence 999999999 47899999999886 688888864 455554 2 36678888898854 56889954 5674 5
Q ss_pred HccCCCcEEEeeCCHHHHHHHHHHHHh--cCCCEEEeeccccccCCCCCCCccccccCCceE-Eee-----cC--CcEEE
Q 015415 220 FQSIPGIQMVACSTPYNAKGLMKAAIR--SENPVILFEHVLLYNLKERIPDEEYICNLEEAE-MVR-----PG--EHVTI 289 (407)
Q Consensus 220 ~~~iPgl~V~~P~d~~e~~~~~~~a~~--~~~Pv~ir~~r~~y~~~~~v~~~~~~~~~Gk~~-vl~-----eG--~dv~I 289 (407)
|+.-.||+|..|++|...+.++++-.. ...|.+++.+|.+.+.+..+..- ..|.-|+++ |+. ++ -+-+|
T Consensus 1036 lcAe~nm~Va~psTPA~yFHLLRrqa~~~~~rPLvVfTPKSmLR~KaA~S~v-edFT~g~F~pVi~D~~~~~~~~V~RVl 1114 (1228)
T PRK12270 1036 LCAEGNMTVAQPSTPANYFHLLRRQALSGPRRPLVVFTPKSMLRLKAAVSDV-EDFTEGKFRPVIDDPTVDDGAKVRRVL 1114 (1228)
T ss_pred hhccCCeEEEccCChHHHHHHHHHHhhcCCCCCeEEEChHHhhcchhhcCCH-HHhccCCceecCCCCCCCCccceeEEE
Confidence 567889999999999999999986544 36899999999877654322110 112234333 221 11 24578
Q ss_pred EEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCC---cEEEEecCccccchHHHHHHHHHhccccC
Q 015415 290 LTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTH---RVLIVEECMRTGGIGASLTAAITENFHDY 366 (407)
Q Consensus 290 ia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~---~vvvvEe~~~~GGlGs~I~~~l~e~~~~~ 366 (407)
+++|-.....++..+. ...-++.+|.+-.|.|||.+.|.+.+.++. .++.|.|...+=|-...++-.|.+..-
T Consensus 1115 LcSGKvYYdL~a~R~k--~~~~d~AIvRvEQLyP~p~~~l~~~l~~ypna~e~~wvQeEP~NqGaw~f~~~~l~~~l~-- 1190 (1228)
T PRK12270 1115 LCSGKLYYDLAARREK--DGRDDTAIVRVEQLYPLPRAELREALARYPNATEVVWVQEEPANQGAWPFMALNLPELLP-- 1190 (1228)
T ss_pred EEcchhHHHHHHHHHh--cCCCceEEEEhhhhCCCCHHHHHHHHHhCCCcceeEEeccCcccCCCchhhhhhhHhhcc--
Confidence 8999999887766443 234479999999999999999999998863 467777766555655666666665410
Q ss_pred CCCCeEEeecCCCCCCC
Q 015415 367 LDAPIVCLSSQDVPTPY 383 (407)
Q Consensus 367 ~~~~v~~ig~~d~~~~~ 383 (407)
...++.+++-+..-.|.
T Consensus 1191 ~~~~lr~VsRpasasPA 1207 (1228)
T PRK12270 1191 DGRRLRRVSRPASASPA 1207 (1228)
T ss_pred CCCCceEecCCcccCCC
Confidence 14578888877665554
No 55
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=98.70 E-value=2.8e-07 Score=97.56 Aligned_cols=228 Identities=18% Similarity=0.165 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHhhhCCC-EEEEeCCCCCCCCc---cccchhhh--hh-------hCCCceEeccchhHHHHHHHHHHHhc
Q 015415 90 FEALREGLEEEMDRDPH-VCVMGEDVGHYGGS---YKVTKGLA--DK-------YGDLRVLDTPIAENSFTGMGIGAAMT 156 (407)
Q Consensus 90 r~a~~~~L~~l~~~d~~-vvvi~aDl~~~~g~---~~~~~~~~--~~-------fgp~R~i~~GIaE~~~vg~A~GlA~~ 156 (407)
..++++-+.++++.|++ +.+.++|-..+++. +++++... +. -...|+++ .++|+.+.|.+.|.++.
T Consensus 404 t~~lg~~l~dv~k~N~~~fRvf~PDE~aSNrl~~v~~~tkr~~~~~~~~ed~~lsp~GRV~e-~LSEh~c~Gwlegy~Lt 482 (793)
T COG3957 404 TTALGRFLRDVMKLNPDNFRVFGPDETASNRLGGVLKVTKRVWMAVTLPEDDFLSPDGRVME-VLSEHACQGWLEGYLLT 482 (793)
T ss_pred HHHHHHHHHHHHhcCccceEeeCCCcchhhhhHHHHHHhhhhhcccccCcccccCCCceeeh-hhcHHHHHHHHHHHHhc
Confidence 47899999999999988 99999997766544 33333221 11 11358999 79999999999999999
Q ss_pred CCeeEEEecchhHHHHHHHHHHHhhhhhc---hhcCCccccc-EEEEecCCC--CCCCCcCccch-HH-HHHccCCC-cE
Q 015415 157 GLRPIVEGMNMGFLLLAFNQISNNCGMLH---YTSGGQFTIP-IVIRGPGGV--GRQLGAEHSQR-LE-SYFQSIPG-IQ 227 (407)
Q Consensus 157 G~rp~~~t~~~~f~~ra~dqi~~~~a~~~---~~~gg~~~lp-vvi~~~~G~--~~~~G~tHsq~-~e-a~~~~iPg-l~ 227 (407)
|.+-++++ |-.|+. ..|.+.|+-+++. .+.+=.-+.| ..++..++. .+.+|-||+.+ ++ .++...++ +.
T Consensus 483 Gr~glf~s-YEaF~~-iv~sm~nQh~kwl~v~~e~~wr~~~~Sln~l~TS~vw~QdhNGfsHQdPgf~~~~~~k~~d~vR 560 (793)
T COG3957 483 GRHGLFAS-YEAFAH-IVDSMFNQHAKWLKVTREVEWRRPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVANKKSDIVR 560 (793)
T ss_pred CCccceee-HHHHHH-HHHHHHhhhHHHHHHHHhcccCCCCCcccceeehhhhhcccCCCccCCchHHHHHHhhccCcee
Confidence 99999996 655642 2233333333220 0111001222 222223443 36789999443 23 44444444 78
Q ss_pred EEeeCCHHHHHHHHHHHHhcCCCEEE-eeccccccCCCCCCCccc---cccCC--ceEEee-c--CCcEEEEEechh-HH
Q 015415 228 MVACSTPYNAKGLMKAAIRSENPVIL-FEHVLLYNLKERIPDEEY---ICNLE--EAEMVR-P--GEHVTILTYSRM-RY 297 (407)
Q Consensus 228 V~~P~d~~e~~~~~~~a~~~~~Pv~i-r~~r~~y~~~~~v~~~~~---~~~~G--k~~vl~-e--G~dv~Iia~G~~-~~ 297 (407)
|+.|.|++-+..++.+|++..+=+.+ ..+|... +...+-+. ...-| -|+... + ..|+++.+.|.+ +.
T Consensus 561 vyfPpDaNtlLav~d~~l~s~n~in~iVa~K~p~---pq~~t~~qA~~~~~~G~~iwewas~d~gepdvV~A~~Gd~~t~ 637 (793)
T COG3957 561 VYFPPDANTLLAVYDHCLRSRNKINVIVASKQPR---PQWLTMEQAEKHCTDGAGIWEWASGDDGEPDVVMACAGDVPTI 637 (793)
T ss_pred EecCCCCcchhhhhhHHhhccCceEEEEecCCCc---ceeecHHHHHHHhhcCcEEEEeccCCCCCCCEEEEecCCcchH
Confidence 99999999999999999997653333 2333221 11111111 11122 222222 2 358999999975 57
Q ss_pred HHHHHHHHHhhCC--CCceEEE---eccccc
Q 015415 298 HVMQAAKTLVNKG--YDPEVID---IRSLKP 323 (407)
Q Consensus 298 ~al~Aa~~L~~~G--i~v~VI~---~~~l~P 323 (407)
++++|++.|++++ +.++||+ +..|.|
T Consensus 638 e~laAa~~L~e~~p~l~vRvVnVvdl~rLq~ 668 (793)
T COG3957 638 EVLAAAQILREEGPELRVRVVNVVDLMRLQP 668 (793)
T ss_pred HHHHHHHHHHHhCccceEEEEEEecchhccC
Confidence 8999999999998 6665555 455544
No 56
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=98.69 E-value=9.7e-08 Score=90.83 Aligned_cols=112 Identities=20% Similarity=0.156 Sum_probs=74.5
Q ss_pred eEeccchhHHHHHHHHHHHhcCCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe--cCCCCCCCCcCcc
Q 015415 136 VLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG--PGGVGRQLGAEHS 213 (407)
Q Consensus 136 ~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~--~~G~~~~~G~tHs 213 (407)
.+-..-+|.++++++.|+|++|.|.++.| .+..+..+.|.|. .++.. ++|+|++. +.|... .+++|+
T Consensus 38 ~~~~~E~E~~A~~~~~GAs~aG~ra~t~t-s~~Gl~lm~e~l~-~a~~~--------~~P~V~~~~~R~g~~~-g~~~~~ 106 (230)
T PF01855_consen 38 KVVQAESEHAAMEAAIGASAAGARAMTAT-SGPGLNLMAEPLY-WAAGT--------ELPIVIVVVQRAGPSP-GLSTQP 106 (230)
T ss_dssp EEEE-SSHHHHHHHHHHHHHTT--EEEEE-ECCHHHHHCCCHH-HHHHT--------T--EEEEEEEB---SS-SB--SB
T ss_pred EEEEecchHHHHHHHHHHHhcCCceEEee-cCCcccccHhHHH-HHHHc--------CCCEEEEEEECCCCCC-CCcCcC
Confidence 44555799999999999999999999986 5566778889885 45554 79988886 455432 133443
Q ss_pred chHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----cCCCEEEeeccc
Q 015415 214 QRLESYFQSIPGIQMVACSTPYNAKGLMKAAIR----SENPVILFEHVL 258 (407)
Q Consensus 214 q~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~~r~ 258 (407)
.--+.++...-++.|+.|+|+||++++...|++ +..||+++.+..
T Consensus 107 ~q~D~~~~~d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~ 155 (230)
T PF01855_consen 107 EQDDLMAARDSGWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGF 155 (230)
T ss_dssp -SHHHHHTTTSS-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECC
T ss_pred ChhHHHHHHhcCeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechh
Confidence 223334444678889999999999999999987 488999986654
No 57
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=98.69 E-value=6.3e-07 Score=94.37 Aligned_cols=284 Identities=19% Similarity=0.250 Sum_probs=192.3
Q ss_pred cccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccc-----------------cchhhhhhhCCCceEeccchhHHH
Q 015415 84 GHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYK-----------------VTKGLADKYGDLRVLDTPIAENSF 146 (407)
Q Consensus 84 ~~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~-----------------~~~~~~~~fgp~R~i~~GIaE~~~ 146 (407)
.+.++|.-+-..++-.|+++.-.|-+-|.|+.. |+|. -+..+.....|=-+-|..++|-+.
T Consensus 646 ~~~iDwal~EalAFgsLl~EG~hVRlSGQDVER--GTFShRH~VLHDQ~~d~~~y~PlnhL~~~Qa~ytV~NSSLSEygV 723 (1017)
T KOG0450|consen 646 SEGVDWALAEALAFGSLLKEGIHVRLSGQDVER--GTFSHRHHVLHDQEVDKRTYIPLNHLWPNQAPYTVCNSSLSEYGV 723 (1017)
T ss_pred hcccchHHHHHHHHHHHHhcCceEEeecccccc--cccccchhhhcccccCcceecchhhcCCCCCceeeeccchhhhhe
Confidence 456777766677777899999999999999974 4554 122333333344577899999999
Q ss_pred HHHHHHHHhc--CCeeEEEecchhHH---HHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCCcCccc-hHHHHH
Q 015415 147 TGMGIGAAMT--GLRPIVEGMNMGFL---LLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHSQ-RLESYF 220 (407)
Q Consensus 147 vg~A~GlA~~--G~rp~~~t~~~~f~---~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G~tHsq-~~ea~~ 220 (407)
+|+-.|.|++ ...++++.+|.+|. +..+||++ ..+-.+|. ....+|+..|.|. -+.||.||. ..|-++
T Consensus 724 LGFElGYsm~sPNaLVlWEAQFGDFaNtAQ~IiDQFI-ssGqaKW~----rqsGlVllLPHGy-eG~GPEHSSaR~ERfL 797 (1017)
T KOG0450|consen 724 LGFELGYSMASPNALVLWEAQFGDFANTAQCIIDQFI-SSGQAKWV----RQSGLVLLLPHGY-EGMGPEHSSARPERFL 797 (1017)
T ss_pred ecceecccccCCCceEEeehhhccccccchhhHHhHh-ccchhhhh----hhcCeEEEccCCc-CCCCcccccccHHHHH
Confidence 9999999999 57899999999885 68899986 34555553 2456787778885 467899954 345332
Q ss_pred c--------------------cCCCcEEEeeCCHHHHHHHHHHHHh--cCCCEEEeeccccccCCC---CC--CCccccc
Q 015415 221 Q--------------------SIPGIQMVACSTPYNAKGLMKAAIR--SENPVILFEHVLLYNLKE---RI--PDEEYIC 273 (407)
Q Consensus 221 ~--------------------~iPgl~V~~P~d~~e~~~~~~~a~~--~~~Pv~ir~~r~~y~~~~---~v--~~~~~~~ 273 (407)
. ..=||+|+.+++|...+.+++.-+. ...|.+|+.+|.+.+... .+ .++...|
T Consensus 798 Qm~nddp~~~p~~~~~~~~Ql~dcNw~vvn~tTPaNyfHvLRRQi~~~FRKPliif~pKsLLRHp~arS~~~ef~~g~~f 877 (1017)
T KOG0450|consen 798 QMSNDDPDVFPDEEEFLQRQLQDCNWQVVNCTTPANYFHVLRRQIHRPFRKPLIIFTPKSLLRHPEARSSFSEFDEGTGF 877 (1017)
T ss_pred HhccCCCccCCcccHHHHHHHhcCCeEEEecCChHHHHHHHHHHhhhcccCceEEeccHHhhcCccccCCHHHhccCCCC
Confidence 1 1247999999999999999998876 478999999987765321 11 1111111
Q ss_pred -----cCCceEEeecCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCC--cEEEE-ecC
Q 015415 274 -----NLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTH--RVLIV-EEC 345 (407)
Q Consensus 274 -----~~Gk~~vl~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~--~vvvv-Ee~ 345 (407)
+-|+.-.-.++-+-+|+++|-.....-++.+....+ -++.+..+-.|.|||.+.|.+.++++. -|+.+ |||
T Consensus 878 q~vi~e~g~~~~~pe~vkrlv~csGkVyydL~k~Rk~~~~~-~~vAi~RvEQl~PFp~dli~~e~~~YpnaEivWcQEE~ 956 (1017)
T KOG0450|consen 878 QRVIPEDGKAAQNPENVKRLVFCSGKVYYDLTKERKEVGLE-GDVAITRVEQLSPFPFDLIQQELNKYPNAEIVWCQEEH 956 (1017)
T ss_pred ceeccccccccCChhhceEEEEecceEehhhhHHHHhcCcc-cceeEEEeeccCCCcHHHHHHHHHhCCCceeeehhhhh
Confidence 123332223566778999998887766666655422 278999999999999999999999875 46666 555
Q ss_pred ccccchHHHHHHHHHhccccCCCCCeEEeecCC
Q 015415 346 MRTGGIGASLTAAITENFHDYLDAPIVCLSSQD 378 (407)
Q Consensus 346 ~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d 378 (407)
...|+| +.|.-.+.-.. ..+..++...|-..
T Consensus 957 ~NmG~w-~Yv~PRl~T~l-~~~~r~v~Y~GR~P 987 (1017)
T KOG0450|consen 957 KNMGAW-DYVEPRLRTAL-KRLARPVKYAGRLP 987 (1017)
T ss_pred cccCch-hhcchHHHHHH-HhhCCcceecccCC
Confidence 555554 44433332211 11234666666543
No 58
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=98.65 E-value=3.3e-07 Score=94.34 Aligned_cols=285 Identities=19% Similarity=0.283 Sum_probs=189.3
Q ss_pred cccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccch----------------hhhhhh-CCCceEeccchhHHH
Q 015415 84 GHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTK----------------GLADKY-GDLRVLDTPIAENSF 146 (407)
Q Consensus 84 ~~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~----------------~~~~~f-gp~R~i~~GIaE~~~ 146 (407)
+-+++|..|-..++-.++.+.-+|-+-|+|+|. |+|..-. .+.... |.--+-|..++|.+.
T Consensus 561 G~kiDWaTAEAlA~GSll~qG~nVRiSGqDVGR--GTFshRHAM~VdQ~Td~~~IPLN~m~~~qkg~LEvans~LSEEAv 638 (913)
T KOG0451|consen 561 GVKIDWATAEALAIGSLLYQGHNVRISGQDVGR--GTFSHRHAMLVDQQTDEMFIPLNSMEGGQKGKLEVANSILSEEAV 638 (913)
T ss_pred CCccchHHHHHHHHHHHHhccCceeeeccccCc--ccccccceeeeeccccceeeeccccCCCcCCeeEeccccccHhhh
Confidence 667889999999999999999999999999995 5554110 000000 012355778999999
Q ss_pred HHHHHHHHhcC--CeeEEEecchhHHHHH---HHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCCcCccchH-HHHH
Q 015415 147 TGMGIGAAMTG--LRPIVEGMNMGFLLLA---FNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHSQRL-ESYF 220 (407)
Q Consensus 147 vg~A~GlA~~G--~rp~~~t~~~~f~~ra---~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G~tHsq~~-ea~~ 220 (407)
+|+-.|||... ..++++.++.+|..-| +|-++. .+..+|+. ...+|+..|.|.. +-|+.||.|- |-++
T Consensus 639 LGFEyGmsienP~~L~iWEAQFGDFfNGAQIIiDTFi~-sgE~KWl~----ssglvmLLPHGyD-GAgpeHSSCRiERFL 712 (913)
T KOG0451|consen 639 LGFEYGMSIENPNNLIIWEAQFGDFFNGAQIIIDTFIV-SGETKWLE----SSGLVMLLPHGYD-GAGPEHSSCRIERFL 712 (913)
T ss_pred hhhhcccccCCcccceeehhhhcccccCceEEEeeeec-ccchhhhh----hCCeEEEccCCcC-CCCCccchhhHHHHH
Confidence 99999999995 6899999988886432 232221 23334442 3457777787754 4578896654 5444
Q ss_pred c-----------cCCCcEEEeeCCHHHHHHHHHHHH-h-cCCCEEEeeccccccCCCCC-------CCccccccCCceEE
Q 015415 221 Q-----------SIPGIQMVACSTPYNAKGLMKAAI-R-SENPVILFEHVLLYNLKERI-------PDEEYICNLEEAEM 280 (407)
Q Consensus 221 ~-----------~iPgl~V~~P~d~~e~~~~~~~a~-~-~~~Pv~ir~~r~~y~~~~~v-------~~~~~~~~~Gk~~v 280 (407)
. .--||.|+-|.++.+.+.+++.-+ + ...|.++.-+|.+.+..... |...|.-.+|.. +
T Consensus 713 QlCDS~E~~vDGd~VNm~vvnPTTpAQYfHlLRRQ~vrNfRKPLiVv~PK~LLRlPaA~ST~~ef~PGTtf~nVigd~-~ 791 (913)
T KOG0451|consen 713 QLCDSKETSVDGDSVNMHVVNPTTPAQYFHLLRRQLVRNFRKPLIVVAPKTLLRLPAATSTHEEFQPGTTFHNVIGDT-I 791 (913)
T ss_pred HHhccccccCCCcceeEEEeCCCCHHHHHHHHHHHHHHhccCceEEechHHHhhCcchhhhHhhcCCCcccccccccc-c
Confidence 2 234799999999999999998654 3 58999998887665421111 122222223322 2
Q ss_pred ee-cCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCC----cEEEEecCccccchHHHH
Q 015415 281 VR-PGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTH----RVLIVEECMRTGGIGASL 355 (407)
Q Consensus 281 l~-eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~----~vvvvEe~~~~GGlGs~I 355 (407)
.+ +.-+-+|+++|--.....++.+.+..+. .+.+|.+-.|-|||.+.|...+++++ .|..=||+...|.| +.|
T Consensus 792 ~~p~kvkkvifcSGKH~y~l~k~Re~rgakd-~~AI~RvE~LCPFPi~~LQa~l~kY~~vqdfvWSQEEprNmGaW-sFV 869 (913)
T KOG0451|consen 792 AKPEKVKKVIFCSGKHYYTLAKEREKRGAKD-TVAILRVESLCPFPIQELQAQLAKYGNVQDFVWSQEEPRNMGAW-SFV 869 (913)
T ss_pred cChhHheEEEEecCcchhhHHHHHHhccccc-ceeeEehhhcCCCchHHHHHHHHhcCChhhhcccccccccCCcc-eee
Confidence 22 2346688999988888777777664443 48999999999999999998888875 45667777655554 344
Q ss_pred HHHHHhccccCCCCCeEEeecCCCCCCC
Q 015415 356 TAAITENFHDYLDAPIVCLSSQDVPTPY 383 (407)
Q Consensus 356 ~~~l~e~~~~~~~~~v~~ig~~d~~~~~ 383 (407)
.-... +. +..++...|-+.-+.|.
T Consensus 870 rPRFE-n~---lg~~L~~~GRpelp~pA 893 (913)
T KOG0451|consen 870 RPRFE-NL---LGQQLHYCGRPELPTPA 893 (913)
T ss_pred chHHH-HH---hhhhheecCCCCCCCcc
Confidence 33322 11 34455666666666554
No 59
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=98.49 E-value=1e-06 Score=96.02 Aligned_cols=284 Identities=19% Similarity=0.274 Sum_probs=183.1
Q ss_pred cccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccc----------------cchhhhhhhCCCceEeccchhHHHH
Q 015415 84 GHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYK----------------VTKGLADKYGDLRVLDTPIAENSFT 147 (407)
Q Consensus 84 ~~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~----------------~~~~~~~~fgp~R~i~~GIaE~~~v 147 (407)
...++|..+-..+...++.+...+.+-+.|++. |+|. .+..+...-+.=.++|.+.+|.+++
T Consensus 563 ~~~iDW~~aE~LAfatll~eG~~iRlsGqDs~R--GTF~hRHaVlhdq~~~~~y~PL~~l~~~q~~f~v~nS~LSEeAvl 640 (906)
T COG0567 563 GQGIDWGMAETLAFATLLDEGHPIRLSGQDSGR--GTFSHRHAVLHDQKTGETYIPLNHLSKGQGKFEVINSPLSEEAVL 640 (906)
T ss_pred ccccchhHHHHhcccceeccCCccccccccCCC--cCccccceeeecccCccccChhhhcccccceEEEEechhhHHHHH
Confidence 445677777777777888889999999999874 4443 1223333222336799999999999
Q ss_pred HHHHHHHhcC--CeeEEEecchhHH---HHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCCcCccc-hHHHHH-
Q 015415 148 GMGIGAAMTG--LRPIVEGMNMGFL---LLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHSQ-RLESYF- 220 (407)
Q Consensus 148 g~A~GlA~~G--~rp~~~t~~~~f~---~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G~tHsq-~~ea~~- 220 (407)
|+=.|-+..- ...+++.++.+|. +..+||.+. .+.++|. ....+|+..|.|.- +.|+.||. .+|.++
T Consensus 641 gFEYGYs~~~p~~lvlWEAQFGDFaNgAQvviDQfis-Sge~KW~----r~sgLv~lLPHgyE-GQGPEHSSaRlER~LQ 714 (906)
T COG0567 641 GFEYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFIS-SGEQKWG----RMSGLVMLLPHGYE-GQGPEHSSARLERFLQ 714 (906)
T ss_pred hhhhhhhhcCCchhhhhhhhhcccccCCeeeeccccc-cHHHHHH----HhcCceEEccCCCC-CCCCcCccchhHHHHH
Confidence 9999999995 4667777888886 578888863 4555442 24567777787753 56899954 556544
Q ss_pred -ccCCCcEEEeeCCHHHHHHHHHHHHh--cCCCEEEeeccccccCCCCCCCccccccCCceE-Ee------ecCCcEEEE
Q 015415 221 -QSIPGIQMVACSTPYNAKGLMKAAIR--SENPVILFEHVLLYNLKERIPDEEYICNLEEAE-MV------RPGEHVTIL 290 (407)
Q Consensus 221 -~~iPgl~V~~P~d~~e~~~~~~~a~~--~~~Pv~ir~~r~~y~~~~~v~~~~~~~~~Gk~~-vl------~eG~dv~Ii 290 (407)
..--||+|+.|+++.+.+.+++.-+. ...|.++..++.+.+....+...+ .+.-|+.+ ++ .+.-..+++
T Consensus 715 LcaE~NmqV~~pstpaq~fHlLRrq~~r~~rkPLiimtPKslLR~~~a~S~~~-el~~~~F~~vl~d~~~~~~~v~rvvl 793 (906)
T COG0567 715 LCAENNMQVVVPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLLRHKLAVSSLE-ELTEGTFQPVLEDIDELDPKVKRVVL 793 (906)
T ss_pred hhHHhCCEEEecCcHHHHHHHHHHHHhhcccCceEecChhhhhhccccCCchh-hhchhhhhhhhccccccccceeeEEe
Confidence 45569999999999999999986554 368999998887655322111000 01111111 11 112345677
Q ss_pred EechhHHHHHHHHHHHhhCCC-CceEEEecccccCchhhHHHHHhcC---CcEEEEecCc-cccchHHHHHHHHHhcccc
Q 015415 291 TYSRMRYHVMQAAKTLVNKGY-DPEVIDIRSLKPFDLYTIGNSIKKT---HRVLIVEECM-RTGGIGASLTAAITENFHD 365 (407)
Q Consensus 291 a~G~~~~~al~Aa~~L~~~Gi-~v~VI~~~~l~Pfd~~~l~~~~~~~---~~vvvvEe~~-~~GGlGs~I~~~l~e~~~~ 365 (407)
++|-+.....+.. +++|. ++-++.+..|.|||.+.+.+.+.++ +.++.+-|.. ..|.|. .+...+.+.--
T Consensus 794 cSGKvyydl~~~r---~~~g~~dvaiiRiEqLyPfP~~~l~~~l~~y~~~~e~vW~QEEp~N~Gaw~-~~~~~l~~~l~- 868 (906)
T COG0567 794 CSGKVYYDLLEQR---EKDGRDDVAIVRIEQLYPFPAKALAALLAKYPNVKEFVWCQEEPKNQGAWY-YIQPHLEEVLP- 868 (906)
T ss_pred eccchHHHHHHHH---hhcCCcceeEEeeecccCchHHHHHHHHHhccccccccccccCCCccccHH-HHHHHHHHhhc-
Confidence 8887776655544 44443 7899999999999999999988876 3456665544 345543 34444433210
Q ss_pred CCCCCeEEeecCCCCCC
Q 015415 366 YLDAPIVCLSSQDVPTP 382 (407)
Q Consensus 366 ~~~~~v~~ig~~d~~~~ 382 (407)
...++...|-+....|
T Consensus 869 -~~~~l~yagRp~saSp 884 (906)
T COG0567 869 -EGDKLRYAGRPASASP 884 (906)
T ss_pred -ccchhcccCCCcccCc
Confidence 0123555665544333
No 60
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=97.78 E-value=0.0017 Score=57.81 Aligned_cols=109 Identities=20% Similarity=0.145 Sum_probs=76.1
Q ss_pred CCceEeccchhHHHHHHHHHHHhcCCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecC-CCCCCC--C
Q 015415 133 DLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPG-GVGRQL--G 209 (407)
Q Consensus 133 p~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~-G~~~~~--G 209 (407)
.-++|.+- .|++++.||.|.++.|.++++.+.. ..+..+.+.|.+.. .. +.|++++... +..... .
T Consensus 41 ~i~~i~~~-~E~~A~~~A~g~~r~~~~v~~~~~g-pG~~n~~~~l~~a~-~~--------~~P~v~i~g~~~~~~~~~~~ 109 (160)
T cd07034 41 GGVVVQAE-SEHAAAEAAIGASAAGARAMTATSG-PGLNLMAEALYLAA-GA--------ELPLVIVVAQRPGPSTGLPK 109 (160)
T ss_pred CcEEEEeC-CHHHHHHHHHHHHhhCCcEEEeeCc-chHHHHHHHHHHHH-hC--------CCCEEEEEeeCCCCCCCCCC
Confidence 46899997 9999999999999999885555544 45566888886433 22 6899988632 221111 1
Q ss_pred cCccchHH--HHHccCCCcEEEeeCCHHHHHHHHHHHHhc----CCCEEEee
Q 015415 210 AEHSQRLE--SYFQSIPGIQMVACSTPYNAKGLMKAAIRS----ENPVILFE 255 (407)
Q Consensus 210 ~tHsq~~e--a~~~~iPgl~V~~P~d~~e~~~~~~~a~~~----~~Pv~ir~ 255 (407)
..| |..+ .+++. -..++.+.+++|+..+++.|++. ++||+++.
T Consensus 110 ~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 110 PDQ-SDLMAARYGGH--PWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred cCc-HHHHHHHhCCC--CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 223 5444 34433 56788899999999999988862 58999974
No 61
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=97.49 E-value=0.0076 Score=54.68 Aligned_cols=154 Identities=15% Similarity=0.126 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhhhCC-CEEEEeCCCCCCCCccccchhhhhh-------------hCCCceEeccchhHHHHHHHHHHHhc
Q 015415 91 EALREGLEEEMDRDP-HVCVMGEDVGHYGGSYKVTKGLADK-------------YGDLRVLDTPIAENSFTGMGIGAAMT 156 (407)
Q Consensus 91 ~a~~~~L~~l~~~d~-~vvvi~aDl~~~~g~~~~~~~~~~~-------------fgp~R~i~~GIaE~~~vg~A~GlA~~ 156 (407)
.++++-|.++++.|+ ++-++++|-..|+....+.+...+. -.+++-+..-++|+...|...|..+.
T Consensus 2 ~~lg~~l~dv~~~N~~nfRvf~PDEt~SNrL~~v~e~t~r~w~~~~~~~~~~~~~~~~G~V~e~LSEh~c~G~leGY~Lt 81 (179)
T PF03894_consen 2 RVLGKYLRDVIKLNPRNFRVFGPDETASNRLNAVFEVTNRQWMARILPPDDDEHLAPGGRVMEVLSEHQCQGWLEGYLLT 81 (179)
T ss_dssp HHHHHHHHHHHHHSTTTEEEEESS-TTTTT-GGGGGT--EE--S----TTT-TTEESS-SEEE-S-HHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhCCCcceeECCCcchhhchHHHHHhcccccccccCCCcchhhcccCCeeeeecCHHHHHHHHHHHHhc
Confidence 467888999998875 6889999987766543333222111 01234444558999999999999999
Q ss_pred CCeeEEEecchhHH---HHHHHHHHHhhhhhchhcCCccccc-EEEEecCCC--CCCCCcCccch-H-HHHHccCCC-cE
Q 015415 157 GLRPIVEGMNMGFL---LLAFNQISNNCGMLHYTSGGQFTIP-IVIRGPGGV--GRQLGAEHSQR-L-ESYFQSIPG-IQ 227 (407)
Q Consensus 157 G~rp~~~t~~~~f~---~ra~dqi~~~~a~~~~~~gg~~~lp-vvi~~~~G~--~~~~G~tHsq~-~-ea~~~~iPg-l~ 227 (407)
|..-++.+ |-.|+ .-++.|-.-.+-... ...-.-+.| +.++..+.. ...+|-||+.+ + +.++...|+ +.
T Consensus 82 Grhglf~s-YEAF~~ivdsM~~Qh~Kwl~~~~-~~~wR~~~~SlN~l~TS~~wrQdhNG~SHQdPgfi~~~~~k~~~~~R 159 (179)
T PF03894_consen 82 GRHGLFAS-YEAFAHIVDSMLNQHAKWLRHAR-ELPWRAPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVLNKKPDVVR 159 (179)
T ss_dssp T-EEEEEE-EGGGGGGGHHHHHHHHHHHHHHH-H-TTS---B-EEEEEES-CCG-TTT-GGG---THHHHHHCC--T-EE
T ss_pred CCcccccc-cchhHHHHHHHHHHHHHHHHHHH-hCcCCCCCcceeEEeeccceecCCCCcccCCChHHHHHHhcCcccce
Confidence 99999986 54453 334444322111100 011112333 333333332 35689999432 2 366665555 78
Q ss_pred EEeeCCHHHHHHHHHHHHh
Q 015415 228 MVACSTPYNAKGLMKAAIR 246 (407)
Q Consensus 228 V~~P~d~~e~~~~~~~a~~ 246 (407)
|+.|.|++-+..++..|++
T Consensus 160 vylPpDANtlLav~~~clr 178 (179)
T PF03894_consen 160 VYLPPDANTLLAVMDHCLR 178 (179)
T ss_dssp EEE-SSHHHHHHHHHHHHH
T ss_pred eecCCcHhHHHHHHHHHhc
Confidence 9999999999999999886
No 62
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=97.28 E-value=0.0036 Score=55.27 Aligned_cols=135 Identities=17% Similarity=0.122 Sum_probs=84.7
Q ss_pred CCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCC-eeEEEecchhHHHHHHHHHHHhhh
Q 015415 104 DPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGL-RPIVEGMNMGFLLLAFNQISNNCG 182 (407)
Q Consensus 104 d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~-rp~~~t~~~~f~~ra~dqi~~~~a 182 (407)
+-+.++.-.+.. ...+.+.+. +- .-|++.+- .|.+++.+|.|.++.+- .+++.+.....+..+.+.|.+ +.
T Consensus 11 Gv~~vfg~pg~~----~~~l~~~~~-~~-~~~~i~~~-~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~~-A~ 82 (155)
T cd07035 11 GVDHVFGVPGGA----ILPLLDALA-RS-GIRYILVR-HEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLAN-AY 82 (155)
T ss_pred CCCEEEECCCCc----hHHHHHHhc-cC-CCEEEEeC-CHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHHH-HH
Confidence 445555555422 122334443 21 35788885 99999999999999955 444444434556667788764 33
Q ss_pred hhchhcCCcccccEEEEecC-CCCCCCCcCccchHH--HHHccCCCcEEEeeCCHHHHHHHHHHHHhc-----CCCEEEe
Q 015415 183 MLHYTSGGQFTIPIVIRGPG-GVGRQLGAEHSQRLE--SYFQSIPGIQMVACSTPYNAKGLMKAAIRS-----ENPVILF 254 (407)
Q Consensus 183 ~~~~~~gg~~~lpvvi~~~~-G~~~~~G~tHsq~~e--a~~~~iPgl~V~~P~d~~e~~~~~~~a~~~-----~~Pv~ir 254 (407)
.. ++|++++... +.....-.+| |..+ .+++.+-.+ .+...+++|+...+..|++. ++||+|.
T Consensus 83 ~~--------~~Pll~i~~~~~~~~~~~~~~-q~~d~~~~~~~~~~~-~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ 152 (155)
T cd07035 83 LD--------SIPLLVITGQRPTAGEGRGAF-QEIDQVALFRPITKW-AYRVTSPEEIPEALRRAFRIALSGRPGPVALD 152 (155)
T ss_pred hh--------CCCEEEEeCCCccccccCCcc-cccCHHHHHHHHhce-EEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 32 7999988632 2221111224 3332 677777655 67778999999999988873 5799996
Q ss_pred ec
Q 015415 255 EH 256 (407)
Q Consensus 255 ~~ 256 (407)
.+
T Consensus 153 ip 154 (155)
T cd07035 153 LP 154 (155)
T ss_pred ec
Confidence 43
No 63
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=96.98 E-value=0.0087 Score=60.80 Aligned_cols=125 Identities=22% Similarity=0.269 Sum_probs=78.7
Q ss_pred hhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEEecchhHHHHHHHHHHHhhh-hhchhcCCcccccEEEEec-
Q 015415 125 KGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGMNMGFLLLAFNQISNNCG-MLHYTSGGQFTIPIVIRGP- 201 (407)
Q Consensus 125 ~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a-~~~~~~gg~~~lpvvi~~~- 201 (407)
..+.++..+.|+|-+- .|..++++|+|+.++ |.+|++..+.+.+ --+.+.|. ++. ... .++|++++..
T Consensus 18 ~~~~~~~~~~~~i~~~-~E~~av~iaaG~~latG~~~~v~mQnSGl-Gn~vN~l~-SL~~~~~------y~iP~l~~i~~ 88 (361)
T TIGR03297 18 NYITDNNRDLRHVIAA-NEGAAVGLAAGAYLATGKRAAVYMQNSGL-GNAVNPLT-SLADTEV------YDIPLLLIVGW 88 (361)
T ss_pred HHHHhcCCCceEEecC-CchHHHHHHHHHHHhcCCccEEEEecCch-hhhhhHHH-hhccccc------cCcCeeEEEec
Confidence 3444455244777775 899999999999999 9999999877765 34666663 231 111 2789887763
Q ss_pred CCCCC-CCCcCcc--chH-HHHHcc--CCCcEEEeeCCHHHHHHHHHHH----HhcCCCEEEeeccccc
Q 015415 202 GGVGR-QLGAEHS--QRL-ESYFQS--IPGIQMVACSTPYNAKGLMKAA----IRSENPVILFEHVLLY 260 (407)
Q Consensus 202 ~G~~~-~~G~tHs--q~~-ea~~~~--iPgl~V~~P~d~~e~~~~~~~a----~~~~~Pv~ir~~r~~y 260 (407)
-|-.+ .+-++|. ... ..+|.. ||...+ |.+.+|....+..| ++.+.|+.++..+...
T Consensus 89 RG~~g~~depqh~~~G~~t~~lL~~~~i~~~~~--~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~~~ 155 (361)
T TIGR03297 89 RGEPGVHDEPQHVKQGRITLSLLDALEIPWEVL--STDNDEALAQIERALAHALATSRPYALVVRKGTF 155 (361)
T ss_pred CCCCCCCCCchhhHHhHHHHHHHHHcCCCEEEC--CCChHHHHHHHHHHHHHHHHHCCCEEEEEccccc
Confidence 34333 5567772 211 356553 553322 45666665555544 4568899998776543
No 64
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=96.78 E-value=0.042 Score=49.58 Aligned_cols=152 Identities=19% Similarity=0.135 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEEecch-
Q 015415 89 LFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNM- 167 (407)
Q Consensus 89 ~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~~~- 167 (407)
..+++.+.|.+. .=+.++.-.+.. ...+.+.+.+.- .-|++.+ -.|++++.+|.|.++.+-||-+....+
T Consensus 3 ~~~~l~~~L~~~---Gv~~vfgvpG~~----~~~l~~al~~~~-~i~~i~~-~~E~~A~~~A~g~ar~~g~~~v~~~~~G 73 (172)
T PF02776_consen 3 GAEALAEALKAN---GVTHVFGVPGSG----NLPLLDALEKSP-GIRFIPV-RHEQGAAFMADGYARATGRPGVVIVTSG 73 (172)
T ss_dssp HHHHHHHHHHHT---T-SEEEEE--GG----GHHHHHHHHHTT-TSEEEE--SSHHHHHHHHHHHHHHHSSEEEEEEETT
T ss_pred HHHHHHHHHHHC---CCeEEEEEeChh----HhHHHHHhhhhc-ceeeecc-cCcchhHHHHHHHHHhhccceEEEeecc
Confidence 344555555432 334444433322 123445555553 2588887 599999999999998865555543333
Q ss_pred hHHHHHHHHHHHhhhhhchhcCCcccccEEEEec-CCCC-CCCCcCccchH-HHHHccCCCcEEEeeCCHHHHHHHHHHH
Q 015415 168 GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGVG-RQLGAEHSQRL-ESYFQSIPGIQMVACSTPYNAKGLMKAA 244 (407)
Q Consensus 168 ~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~~-~~~G~tHsq~~-ea~~~~iPgl~V~~P~d~~e~~~~~~~a 244 (407)
..+.-+..-|.+ ++.. +.|++++.. .+.. .+.+..|.... ..+++.+-.+ .+.+.+++++...++.|
T Consensus 74 pG~~n~~~~l~~--A~~~-------~~Pvl~i~g~~~~~~~~~~~~q~~~d~~~~~~~~~k~-~~~v~~~~~~~~~~~~A 143 (172)
T PF02776_consen 74 PGATNALTGLAN--AYAD-------RIPVLVITGQRPSAGEGRGAFQQEIDQQSLFRPVTKW-SYRVTSPDDLPEALDRA 143 (172)
T ss_dssp HHHHTTHHHHHH--HHHT-------T-EEEEEEEESSGGGTTTTSTTSSTHHHHHHGGGSSE-EEEECSGGGHHHHHHHH
T ss_pred cchHHHHHHHhh--cccc-------eeeEEEEecccchhhhcccccccchhhcchhccccch-hcccCCHHHHHHHHHHH
Confidence 334444454432 2332 789998863 2222 23455552222 3788887655 77778888877777777
Q ss_pred Hh-----cCCCEEEeecccc
Q 015415 245 IR-----SENPVILFEHVLL 259 (407)
Q Consensus 245 ~~-----~~~Pv~ir~~r~~ 259 (407)
++ .++||+|..+...
T Consensus 144 ~~~a~~~~~gPv~l~ip~dv 163 (172)
T PF02776_consen 144 FRAATSGRPGPVYLEIPQDV 163 (172)
T ss_dssp HHHHHHCSTSEEEEEEEHHH
T ss_pred HHHhccCCCccEEEEcChhH
Confidence 65 3789999877644
No 65
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=96.62 E-value=0.078 Score=47.73 Aligned_cols=123 Identities=14% Similarity=0.136 Sum_probs=77.1
Q ss_pred ccchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe
Q 015415 122 KVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG 200 (407)
Q Consensus 122 ~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~ 200 (407)
.+.+.+.+.- .=|++.+ -.|+++..||-|.|+. |...++.+.....+.-++.-+.+. +.. ++||+++.
T Consensus 28 ~l~~al~~~~-~i~~v~~-rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~~l~~A--~~~-------~~Pvl~I~ 96 (164)
T cd07039 28 GLMDALRREG-KIEFIQV-RHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLNGLYDA--KRD-------RAPVLAIA 96 (164)
T ss_pred HHHHHHhhcC-CCeEEEe-CCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHH--Hhc-------CCCEEEEe
Confidence 3345554422 2377777 4999999999999999 543333333333444455656432 222 79999986
Q ss_pred cCCCCCCCCc-CccchHH--HHHccCCCcEEEeeCCHHHHHHHHHHHHh----cCCCEEEeecc
Q 015415 201 PGGVGRQLGA-EHSQRLE--SYFQSIPGIQMVACSTPYNAKGLMKAAIR----SENPVILFEHV 257 (407)
Q Consensus 201 ~~G~~~~~G~-tHsq~~e--a~~~~iPgl~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~~r 257 (407)
........|. .+ |.++ .+++.+-.+ ...+.++.++...++.|++ .++||+|-.+.
T Consensus 97 g~~~~~~~~~~~~-q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~ 158 (164)
T cd07039 97 GQVPTDELGTDYF-QEVDLLALFKDVAVY-NETVTSPEQLPELLDRAIRTAIAKRGVAVLILPG 158 (164)
T ss_pred cCCcccccCCCCC-cccCHHHHHHHhhcE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCh
Confidence 3322222221 34 4333 788888766 6677788888888888876 36899996554
No 66
>PRK07586 hypothetical protein; Validated
Probab=96.16 E-value=0.48 Score=50.21 Aligned_cols=197 Identities=14% Similarity=0.044 Sum_probs=105.3
Q ss_pred CceEeccchhHHHHHHHHHHHhcCCeeE-EEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCCc-C
Q 015415 134 LRVLDTPIAENSFTGMGIGAAMTGLRPI-VEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGA-E 211 (407)
Q Consensus 134 ~R~i~~GIaE~~~vg~A~GlA~~G~rp~-~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G~-t 211 (407)
=|+|.+- .|++++.||-|.|+..-+|- +.+.+...+.-+.--|.+ |+.. ++||+++.........+. .
T Consensus 40 i~~i~~r-hE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gl~~--A~~~-------~~Pvl~i~G~~~~~~~~~~~ 109 (514)
T PRK07586 40 MRCVLGL-FEGVATGAADGYARMAGKPAATLLHLGPGLANGLANLHN--ARRA-------RTPIVNIVGDHATYHRKYDA 109 (514)
T ss_pred CeEEEec-cHHHHHHHHHHHHHHHCCCEEEEecccHHHHHHHHHHHH--HHhc-------CCCEEEEecCCchhccCCCc
Confidence 3888885 99999999999998844443 332333334445454432 3332 799998853221111121 2
Q ss_pred ccchH--HHHHccCCCcEEEeeCCHHHHHHHHHHHHhc-----CCCEEEeeccccccCCCCCCCcc----ccccCCc---
Q 015415 212 HSQRL--ESYFQSIPGIQMVACSTPYNAKGLMKAAIRS-----ENPVILFEHVLLYNLKERIPDEE----YICNLEE--- 277 (407)
Q Consensus 212 Hsq~~--ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~-----~~Pv~ir~~r~~y~~~~~v~~~~----~~~~~Gk--- 277 (407)
| |.. ..+++.+--+ .....+++++...++.|++. ++||||-.+........+.+... .......
T Consensus 110 ~-q~~d~~~~~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~v 187 (514)
T PRK07586 110 P-LTSDIEALARPVSGW-VRRSESAADVAADAAAAVAAARGAPGQVATLILPADVAWSEGGPPAPPPPAPAPAAVDPAAV 187 (514)
T ss_pred c-cccchhhhhccccce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEeccchhccccccccccCCCCCCCCCCHHHH
Confidence 3 323 3677776544 56677888888888877762 58999987765322110000000 0000000
Q ss_pred ---eEEeec-CCcEEEEEechhHHHHHHHHHHHhhC-CCCceEEEe---------ccccc-----CchhhHHHHHhcCCc
Q 015415 278 ---AEMVRP-GEHVTILTYSRMRYHVMQAAKTLVNK-GYDPEVIDI---------RSLKP-----FDLYTIGNSIKKTHR 338 (407)
Q Consensus 278 ---~~vl~e-G~dv~Iia~G~~~~~al~Aa~~L~~~-Gi~v~VI~~---------~~l~P-----fd~~~l~~~~~~~~~ 338 (407)
.+.++. .+-++|++.|.....+.++..+|.++ |+- |+.- +-+-| .-.....+.+++.+.
T Consensus 188 ~~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~l~~p--V~t~~~~~~~~~gkg~~~~~~~~~~~~~~~~~~~~aDl 265 (514)
T PRK07586 188 EAAAAALRSGEPTVLLLGGRALRERGLAAAARIAAATGAR--LLAETFPARMERGAGRPAVERLPYFAEQALAQLAGVRH 265 (514)
T ss_pred HHHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHHCCC--EEecccccccccCCCCCCcccccchHHHHHHHHhcCCE
Confidence 012222 34577777776655666666666443 555 3321 11111 111223456777787
Q ss_pred EEEEec
Q 015415 339 VLIVEE 344 (407)
Q Consensus 339 vvvvEe 344 (407)
||.+--
T Consensus 266 vl~vG~ 271 (514)
T PRK07586 266 LVLVGA 271 (514)
T ss_pred EEEECC
Confidence 777753
No 67
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=96.12 E-value=0.046 Score=49.02 Aligned_cols=113 Identities=21% Similarity=0.301 Sum_probs=68.8
Q ss_pred CceEeccchhHHHHHHHHHHHhcCCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec-CCCCCCCCcCc
Q 015415 134 LRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGVGRQLGAEH 212 (407)
Q Consensus 134 ~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~~~~~G~tH 212 (407)
-|||-. -.|...+++|+|..+.|.+|.+++..+... -+...|.. +.+. .++||+++.. -|..+..-+.|
T Consensus 35 i~~i~~-~~ee~aa~~aAg~~~~~~~~~v~~~~sG~g-n~~~~l~~-a~~~-------~~~Pvl~i~g~rg~~~~~~~~q 104 (157)
T TIGR03845 35 FRHIPL-TREEEGVGICAGAYLAGKKPAILMQSSGLG-NSINALAS-LNKT-------YGIPLPILASWRGVYKEKIPAQ 104 (157)
T ss_pred CcEEec-CChHHHHHHHHHHHHhcCCcEEEEeCCcHH-HHHHHHHH-HHHc-------CCCCEEEEEeccCCCCCCCccc
Confidence 466644 488889999999999999999987776643 46666643 2212 2799998862 23222211111
Q ss_pred --cchH-HHHHccCCCcEEEeeCCHHHHHHHHHHHHh----cCCCEEEeeccc
Q 015415 213 --SQRL-ESYFQSIPGIQMVACSTPYNAKGLMKAAIR----SENPVILFEHVL 258 (407)
Q Consensus 213 --sq~~-ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~~r~ 258 (407)
...+ +..|..+ ++......+++|+ ..+..|++ .++|++|+..+.
T Consensus 105 ~~~g~~~~~~l~~~-~i~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~~~ 155 (157)
T TIGR03845 105 IPMGRATPKLLDTL-GIPYTIPREPEEA-KLIEKAISDAYENSRPVAALLDPK 155 (157)
T ss_pred cchhhhhHHHHHHc-CCCeEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEeCC
Confidence 0111 2333322 2235666778888 77777765 468999986653
No 68
>PRK05858 hypothetical protein; Provisional
Probab=96.10 E-value=0.43 Score=50.97 Aligned_cols=152 Identities=13% Similarity=0.080 Sum_probs=88.3
Q ss_pred chHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEE-ec
Q 015415 87 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVE-GM 165 (407)
Q Consensus 87 ~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~-t~ 165 (407)
++..+++.+.|.++ +-+.++.-.... ...+.+.+. +. .=|||.+- .|++++.||-|.|+..-+|-++ ..
T Consensus 5 ~~~~~~l~~~L~~~---GV~~vFg~pG~~----~~~l~dal~-~~-~i~~i~~r-hE~~A~~~AdGyar~tg~~gv~~~t 74 (542)
T PRK05858 5 GHAGRLAARRLKAH---GVDTMFTLSGGH----LFPLYDGAR-EE-GIRLIDVR-HEQTAAFAAEAWAKLTRVPGVAVLT 74 (542)
T ss_pred CcHHHHHHHHHHHc---CCCEEEeCCCcc----hHHHHHHHH-hc-CCCEEeec-cHHHHHHHHHHHHHhcCCCeEEEEc
Confidence 33445555555433 334444322111 123334443 33 35899985 9999999999999994444333 22
Q ss_pred chhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCC-cCccchHH--HHHccCCCcEEEeeCCHHHHHHHHH
Q 015415 166 NMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLG-AEHSQRLE--SYFQSIPGIQMVACSTPYNAKGLMK 242 (407)
Q Consensus 166 ~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G-~tHsq~~e--a~~~~iPgl~V~~P~d~~e~~~~~~ 242 (407)
+...+.-+..-|.+ +... ++||+++.........| ..+ |.++ .+++.+--+ .....+++++...+.
T Consensus 75 ~GpG~~n~~~~i~~-A~~~--------~~Pvl~i~g~~~~~~~~~~~~-q~~d~~~l~~~~tk~-~~~v~~~~~~~~~i~ 143 (542)
T PRK05858 75 AGPGVTNGMSAMAA-AQFN--------QSPLVVLGGRAPALRWGMGSL-QEIDHVPFVAPVTKF-AATAQSAENAGRLVD 143 (542)
T ss_pred CCchHHHHHHHHHH-HHhc--------CCCEEEEeCCCCcccCCCCCC-cccchhhhhhhhhce-EEEeCCHHHHHHHHH
Confidence 23334445555543 2222 79999885322221212 223 4343 688887765 566677888888888
Q ss_pred HHHhc-----CCCEEEeecccc
Q 015415 243 AAIRS-----ENPVILFEHVLL 259 (407)
Q Consensus 243 ~a~~~-----~~Pv~ir~~r~~ 259 (407)
.|++. ++||+|-.+...
T Consensus 144 ~A~~~A~~~~~GPV~l~iP~dv 165 (542)
T PRK05858 144 QALQAAVTPHRGPVFVDFPMDH 165 (542)
T ss_pred HHHHHHcCCCCCeEEEEcChhh
Confidence 88762 579999877543
No 69
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=95.87 E-value=0.67 Score=49.69 Aligned_cols=114 Identities=15% Similarity=0.077 Sum_probs=73.2
Q ss_pred CceEeccchhHHHHHHHHHHHhcCCeeEE-EecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCC--CCCCc
Q 015415 134 LRVLDTPIAENSFTGMGIGAAMTGLRPIV-EGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVG--RQLGA 210 (407)
Q Consensus 134 ~R~i~~GIaE~~~vg~A~GlA~~G~rp~~-~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~--~~~G~ 210 (407)
=|++.+- .|++++.||.|.|+..-+|-+ .+.+...+.-++.-|.+ |+.. ++||+++...-.. .+.+.
T Consensus 47 i~~v~~r-hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gi~~--A~~~-------~~Pvl~i~g~~~~~~~~~~~ 116 (557)
T PRK08199 47 IRVIVCR-QEGGAAMMAEAYGKLTGRPGICFVTRGPGATNASIGVHT--AFQD-------STPMILFVGQVARDFREREA 116 (557)
T ss_pred CcEEEec-cHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHH--Hhhc-------CCCEEEEecCCccccCCCCc
Confidence 4788884 999999999999999544433 32233444445565542 3332 8999988532211 12222
Q ss_pred CccchHH--HHHccCCCcEEEeeCCHHHHHHHHHHHHhc-----CCCEEEeeccccc
Q 015415 211 EHSQRLE--SYFQSIPGIQMVACSTPYNAKGLMKAAIRS-----ENPVILFEHVLLY 260 (407)
Q Consensus 211 tHsq~~e--a~~~~iPgl~V~~P~d~~e~~~~~~~a~~~-----~~Pv~ir~~r~~y 260 (407)
+ |.++ .+++.+-.+ .+...+++++...++.|++. ++||+|..+..+.
T Consensus 117 -~-q~~d~~~l~~~~tk~-~~~v~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~dl~ 170 (557)
T PRK08199 117 -F-QEIDYRRMFGPMAKW-VAEIDDAARIPELVSRAFHVATSGRPGPVVLALPEDVL 170 (557)
T ss_pred -c-cccCHHHhhhhhhce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhHh
Confidence 3 3343 788877665 44457888888888888762 5899998776543
No 70
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=95.79 E-value=0.2 Score=44.72 Aligned_cols=144 Identities=13% Similarity=0.069 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEEecch-hH
Q 015415 91 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNM-GF 169 (407)
Q Consensus 91 ~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~~~-~f 169 (407)
+.+-+.|.+.+ + +.+++. |.|. ... .-+.....|.+|+..| +=...++.|.|++++-.+|+++...- .|
T Consensus 2 ~~~~~~l~~~l-~-d~~vv~--d~G~----~~~-~~~~~~~~~~~~~~~g-smG~~lp~AiGa~~a~~~~Vv~i~GDG~f 71 (157)
T cd02001 2 IAAIAEIIEAS-G-DTPIVS--TTGY----ASR-ELYDVQDRDGHFYMLG-SMGLAGSIGLGLALGLSRKVIVVDGDGSL 71 (157)
T ss_pred HHHHHHHHHhC-C-CCEEEe--CCCH----hHH-HHHHhhcCCCCEEeec-chhhHHHHHHHHHhcCCCcEEEEECchHH
Confidence 44556666666 3 334443 4442 111 1122323388998755 33334557888887755778775443 23
Q ss_pred HHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCCCC--cCcc--chHHHHHccCCCcEEEeeCCHHHHHHHHHHH
Q 015415 170 LLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQLG--AEHS--QRLESYFQSIPGIQMVACSTPYNAKGLMKAA 244 (407)
Q Consensus 170 ~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~~G--~tHs--q~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a 244 (407)
++-.-+ +- -++..+ ++|++++. .++..+..+ .++. -++..+...+ |+.-+...+++|+...++++
T Consensus 72 ~m~~~e-l~-t~~~~~-------~~~i~~vV~nN~~~g~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a 141 (157)
T cd02001 72 LMNPGV-LL-TAGEFT-------PLNLILVVLDNRAYGSTGGQPTPSSNVNLEAWAAAC-GYLVLSAPLLGGLGSEFAGL 141 (157)
T ss_pred HhcccH-HH-HHHHhc-------CCCEEEEEEeCccccccCCcCCCCCCCCHHHHHHHC-CCceEEcCCHHHHHHHHHHH
Confidence 222222 21 122210 37877665 443322212 1221 1333444443 55566778999999999999
Q ss_pred HhcCCCEEEe
Q 015415 245 IRSENPVILF 254 (407)
Q Consensus 245 ~~~~~Pv~ir 254 (407)
+..++|++|-
T Consensus 142 ~~~~gp~vi~ 151 (157)
T cd02001 142 LATTGPTLLH 151 (157)
T ss_pred HhCCCCEEEE
Confidence 9989999874
No 71
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=95.61 E-value=0.22 Score=53.39 Aligned_cols=123 Identities=14% Similarity=0.078 Sum_probs=77.4
Q ss_pred cchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec
Q 015415 123 VTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP 201 (407)
Q Consensus 123 ~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~ 201 (407)
+.+.+.+.- .=|++.+- .|++++.||.|.|+. |...++.+.+...+.-++.-|.+ |+.. ++||+++..
T Consensus 30 l~~~l~~~~-~i~~i~~~-hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~~i~~--A~~~-------~~Pvl~i~g 98 (558)
T TIGR00118 30 IYDALYNDS-GIEHILVR-HEQGAAHAADGYARASGKVGVVLVTSGPGATNLVTGIAT--AYMD-------SIPMVVFTG 98 (558)
T ss_pred HHHHhhccC-CceEEEeC-cHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHHH--HHhc-------CCCEEEEec
Confidence 345554321 23899986 999999999999987 54444333343444556666643 2332 799998853
Q ss_pred CCCCCCCC-cCccchHH--HHHccCCCcEEEeeCCHHHHHHHHHHHHhc-----CCCEEEeeccc
Q 015415 202 GGVGRQLG-AEHSQRLE--SYFQSIPGIQMVACSTPYNAKGLMKAAIRS-----ENPVILFEHVL 258 (407)
Q Consensus 202 ~G~~~~~G-~tHsq~~e--a~~~~iPgl~V~~P~d~~e~~~~~~~a~~~-----~~Pv~ir~~r~ 258 (407)
.-.....| ..+ |.++ .+++.+--+ .....+++++..+++.|++. ++||||-.+..
T Consensus 99 ~~~~~~~~~~~~-q~~d~~~~~~~~tk~-~~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~d 161 (558)
T TIGR00118 99 QVPTSLIGSDAF-QEADILGITMPITKH-SFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKD 161 (558)
T ss_pred CCCccccCCCCC-cccChhhhhcCccce-eEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcChh
Confidence 22111112 123 4333 688877665 44457889999888888873 58999987754
No 72
>PRK07064 hypothetical protein; Provisional
Probab=95.55 E-value=1.5 Score=46.82 Aligned_cols=111 Identities=14% Similarity=0.093 Sum_probs=71.2
Q ss_pred ceEeccchhHHHHHHHHHHHhc-CCeeEE-EecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCC---CCC-
Q 015415 135 RVLDTPIAENSFTGMGIGAAMT-GLRPIV-EGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVG---RQL- 208 (407)
Q Consensus 135 R~i~~GIaE~~~vg~A~GlA~~-G~rp~~-~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~---~~~- 208 (407)
|++.+ ..|+++..||.|.|+. |...++ .|..+. +.-++.-|.+ + +.. ++||+++...-.. +..
T Consensus 43 ~~i~~-~hE~~A~~~A~gyar~tg~~~v~~~t~GpG-~~N~~~~i~~-A-~~~-------~~Pvl~i~g~~~~~~~~~~~ 111 (544)
T PRK07064 43 RFVPA-RGEAGAVNMADAHARVSGGLGVALTSTGTG-AGNAAGALVE-A-LTA-------GTPLLHITGQIETPYLDQDL 111 (544)
T ss_pred cEEee-ccHHHHHHHHHHHHHhcCCCeEEEeCCCCc-HHHHHHHHHH-H-Hhc-------CCCEEEEeCCCCcccccCCC
Confidence 88887 5999999999999988 543443 343444 4445566643 2 222 7999988532111 111
Q ss_pred CcCccchH--HHHHccCCCcEEEeeCCHHHHHHHHHHHHhc-----CCCEEEeeccc
Q 015415 209 GAEHSQRL--ESYFQSIPGIQMVACSTPYNAKGLMKAAIRS-----ENPVILFEHVL 258 (407)
Q Consensus 209 G~tHsq~~--ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~-----~~Pv~ir~~r~ 258 (407)
+..| |.+ ..+++.+-.+ .+...+++++..+++.|++. ++||+|-.+..
T Consensus 112 ~~~~-~~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 166 (544)
T PRK07064 112 GYIH-EAPDQLTMLRAVSKA-AFRVRSAETALATIREAVRVALTAPTGPVSVEIPID 166 (544)
T ss_pred cccc-cccCHHHHhhhhcce-EEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEeCHh
Confidence 1234 533 3788877665 55567788888888777752 68999987654
No 73
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.51 E-value=0.36 Score=52.12 Aligned_cols=158 Identities=14% Similarity=0.040 Sum_probs=91.7
Q ss_pred ccCcccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCe
Q 015415 81 SKQGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLR 159 (407)
Q Consensus 81 ~~~~~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~r 159 (407)
+.+...++..+++.+.|.++. =+.|+.+-.+- ...+.+.+.+.- .=|+|.+ -.|++++.||-|.|+. |..
T Consensus 15 ~~~~~~~~~a~~l~~~L~~~G--V~~vFgvpG~~-----~~~l~dal~~~~-~i~~i~~-rhE~~A~~~AdgYar~tg~~ 85 (587)
T PRK06965 15 SPPAADSIGAEILMKALAAEG--VEFIWGYPGGA-----VLYIYDELYKQD-KIQHVLV-RHEQAAVHAADGYARATGKV 85 (587)
T ss_pred CCCchhccHHHHHHHHHHHcC--CCEEEecCCcc-----hHHHHHHHhhcC-CCeEEEe-CCHHHHHHHHHHHHHHhCCC
Confidence 344445555666666665432 13344443321 123345554321 2488888 4999999999999988 544
Q ss_pred eEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCCc-CccchHH--HHHccCCCcEEEeeCCHHH
Q 015415 160 PIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGA-EHSQRLE--SYFQSIPGIQMVACSTPYN 236 (407)
Q Consensus 160 p~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G~-tHsq~~e--a~~~~iPgl~V~~P~d~~e 236 (407)
.++.+.+...+.-++.-|.+ |+.. ++||+++.........|. .+ |.++ ++++.+--+ .....++++
T Consensus 86 gv~~~t~GpG~~N~l~gl~~--A~~~-------~~Pvl~i~G~~~~~~~~~~~~-q~~d~~~l~~~itk~-~~~v~~~~~ 154 (587)
T PRK06965 86 GVALVTSGPGVTNAVTGIAT--AYMD-------SIPMVVISGQVPTAAIGQDAF-QECDTVGITRPIVKH-NFLVKDVRD 154 (587)
T ss_pred eEEEECCCccHHHHHHHHHH--Hhhc-------CCCEEEEecCCCccccCCCCc-ccccHHHHhcCCcce-eEEeCCHHH
Confidence 44333333344445565543 2332 799999863222211121 23 3333 788887665 555677888
Q ss_pred HHHHHHHHHhc-----CCCEEEeeccc
Q 015415 237 AKGLMKAAIRS-----ENPVILFEHVL 258 (407)
Q Consensus 237 ~~~~~~~a~~~-----~~Pv~ir~~r~ 258 (407)
+..+++.|++. ++||||-.+..
T Consensus 155 ~~~~i~~A~~~A~~~~~GPV~l~iP~D 181 (587)
T PRK06965 155 LAETVKKAFYIARTGRPGPVVVDIPKD 181 (587)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 77777777762 58999987764
No 74
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=95.49 E-value=0.35 Score=52.58 Aligned_cols=153 Identities=14% Similarity=0.036 Sum_probs=88.3
Q ss_pred cchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEEe
Q 015415 86 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVEG 164 (407)
Q Consensus 86 ~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t 164 (407)
+++..+++.+.|.++. -+.++.+-.+- ...+.+.+.+.- .=++|.+ -.|++++.||.|.|+. |...++..
T Consensus 30 ~~~~a~~l~~~L~~~G--V~~vFgipG~~-----~~~l~dal~~~~-~i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~ 100 (612)
T PRK07789 30 RMTGAQAVVRSLEELG--VDVVFGIPGGA-----ILPVYDPLFDST-KVRHVLV-RHEQGAGHAAEGYAQATGRVGVCMA 100 (612)
T ss_pred cccHHHHHHHHHHHCC--CCEEEEcCCcc-----hHHHHHHHhccC-CceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3444555555554321 13344443321 123334443221 2478888 5999999999999988 64444433
Q ss_pred cchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCC-cCccchHH--HHHccCCCcEEEeeCCHHHHHHHH
Q 015415 165 MNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLG-AEHSQRLE--SYFQSIPGIQMVACSTPYNAKGLM 241 (407)
Q Consensus 165 ~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G-~tHsq~~e--a~~~~iPgl~V~~P~d~~e~~~~~ 241 (407)
.+...+.-++.-|.+ + +.. ++||+++.........| ..+ |.++ ++++.+--+ .....+++++..++
T Consensus 101 t~GPG~~N~l~gl~~-A-~~~-------~~PllvI~G~~~~~~~~~~~~-q~~d~~~l~~~~tk~-s~~v~~~~~i~~~l 169 (612)
T PRK07789 101 TSGPGATNLVTPIAD-A-NMD-------SVPVVAITGQVGRGLIGTDAF-QEADIVGITMPITKH-NFLVTDADDIPRVI 169 (612)
T ss_pred CCCccHHHHHHHHHH-H-hhc-------CCCEEEEecCCCccccCCCcC-cccchhhhhhcceeE-EEEcCCHHHHHHHH
Confidence 333344445565543 3 332 79999886322111112 123 4333 788877655 44567899999999
Q ss_pred HHHHhc-----CCCEEEeeccc
Q 015415 242 KAAIRS-----ENPVILFEHVL 258 (407)
Q Consensus 242 ~~a~~~-----~~Pv~ir~~r~ 258 (407)
+.|++. ++||+|-.+..
T Consensus 170 ~~A~~~A~~~~~GPV~l~iP~D 191 (612)
T PRK07789 170 AEAFHIASTGRPGPVLVDIPKD 191 (612)
T ss_pred HHHHHHHhcCCCceEEEEEccc
Confidence 888863 58999987754
No 75
>PRK12474 hypothetical protein; Provisional
Probab=95.46 E-value=1.6 Score=46.44 Aligned_cols=155 Identities=10% Similarity=-0.015 Sum_probs=88.8
Q ss_pred cchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEEe
Q 015415 86 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVEG 164 (407)
Q Consensus 86 ~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t 164 (407)
+++..+++.+.|.++.- +.|+.+-.|. ...+.+.+.+ ...=|+|.+- .|+++..||-|.|+. |..-++.+
T Consensus 4 ~~~~~~~l~~~L~~~GV--~~vFGvpG~~-----~~~l~dal~~-~~~i~~i~~r-hE~~A~~mAdgYaR~tg~~gv~~~ 74 (518)
T PRK12474 4 TMNGADSVVDTLLNCGV--EVCFANPGTS-----EMHFVAALDR-VPRMRPVLCL-FEGVVTGAADGYGRIAGKPAVTLL 74 (518)
T ss_pred CccHHHHHHHHHHHCCC--CEEEECCCcc-----hHHHHHHhhc-cCCceEEEec-chHHHHHHHHHHHHHhCCCEEEEE
Confidence 44455666666654321 3344443321 1223344432 2123889885 999999999999988 54444333
Q ss_pred cchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCCc-Cccc-hHHHHHccCCCcEEEeeCCHHHHHHHHH
Q 015415 165 MNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGA-EHSQ-RLESYFQSIPGIQMVACSTPYNAKGLMK 242 (407)
Q Consensus 165 ~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G~-tHsq-~~ea~~~~iPgl~V~~P~d~~e~~~~~~ 242 (407)
.+.....-++--|.+ |+.. ++||+++.........+. .|++ ...++++.+--+ .+...+++++..+++
T Consensus 75 t~GpG~~N~~~gl~~--A~~d-------~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~vtk~-~~~v~~~~~~~~~i~ 144 (518)
T PRK12474 75 HLGPGLANGLANLHN--ARRA-------ASPIVNIVGDHAVEHLQYDAPLTSDIDGFARPVSRW-VHRSASAGAVDSDVA 144 (518)
T ss_pred ccchhHhHhHHHHHH--Hhhc-------CCCEEEEeccCchhhcCCCCccccCHHHhhhcccce-eeecCCHHHHHHHHH
Confidence 333333434444432 2322 799998853221111111 2312 223788876654 556789999999999
Q ss_pred HHHhc-----CCCEEEeecccc
Q 015415 243 AAIRS-----ENPVILFEHVLL 259 (407)
Q Consensus 243 ~a~~~-----~~Pv~ir~~r~~ 259 (407)
.|++. ++||+|-.++..
T Consensus 145 rA~~~A~~~~~GPV~l~iP~Dv 166 (518)
T PRK12474 145 RAVQAAQSAPGGIATLIMPADV 166 (518)
T ss_pred HHHHHHhcCCCCcEEEEechhh
Confidence 88862 589999877653
No 76
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=95.44 E-value=0.15 Score=45.96 Aligned_cols=120 Identities=16% Similarity=0.156 Sum_probs=69.5
Q ss_pred cchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEE-EecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec
Q 015415 123 VTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIV-EGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP 201 (407)
Q Consensus 123 ~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~-~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~ 201 (407)
+.+.+.+.- .=||+.+- .|++++.||-|.|+.--+|-+ .+.+...+.-+..-|.+ +-.. +.||+++..
T Consensus 26 l~~al~~~~-~i~~v~~r-hE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl~~-A~~~--------~~Pvl~i~g 94 (162)
T cd07037 26 LALAAAEHP-EFRLHVRV-DERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAVVE-AYYS--------GVPLLVLTA 94 (162)
T ss_pred HHHHHHhCC-CceEEecc-ChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHHHH-HHhc--------CCCEEEEEC
Confidence 344553321 23788885 999999999999999444443 33333444445555543 2222 789999864
Q ss_pred CCCCCCCC-cCccchHH--HHHccCCCcEEEeeCCHHH------HHHHHHHHHh----c-CCCEEEee
Q 015415 202 GGVGRQLG-AEHSQRLE--SYFQSIPGIQMVACSTPYN------AKGLMKAAIR----S-ENPVILFE 255 (407)
Q Consensus 202 ~G~~~~~G-~tHsq~~e--a~~~~iPgl~V~~P~d~~e------~~~~~~~a~~----~-~~Pv~ir~ 255 (407)
.......+ .+| |.++ .+++.+-.+ .....++++ +..+++.|++ . ++||+|-+
T Consensus 95 ~~~~~~~~~~~~-q~~d~~~l~~~vtk~-~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~i 160 (162)
T cd07037 95 DRPPELRGTGAN-QTIDQVGLFGDYVRW-SVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNL 160 (162)
T ss_pred CCCHHhcCCCCC-cccchhhhccceeeE-EEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEec
Confidence 32222211 234 4443 677766554 344445555 5666666665 2 58999853
No 77
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.44 E-value=0.25 Score=53.49 Aligned_cols=148 Identities=11% Similarity=0.069 Sum_probs=87.6
Q ss_pred HHHHHHHhhhC--CCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEEecchhHH
Q 015415 94 REGLEEEMDRD--PHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGMNMGFL 170 (407)
Q Consensus 94 ~~~L~~l~~~d--~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~~~~f~ 170 (407)
++.|.+.+++. +.|+.+-.+- ...+.+.+.+.- .=|||.+ -.|++++.||-|.|+. |...++.+.+...+
T Consensus 14 a~~l~~~L~~~GV~~vFGvpG~~-----~~~l~dal~~~~-~i~~I~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~ 86 (595)
T PRK09107 14 AEMVVQALKDQGVEHIFGYPGGA-----VLPIYDEIFQQD-DIQHILV-RHEQGAGHAAEGYARSTGKPGVVLVTSGPGA 86 (595)
T ss_pred HHHHHHHHHHCCCCEEEEccCcc-----hHHHHHHHhhcC-CCeEEEE-CChHHHHHHHHHHHHHhCCCEEEEECCCccH
Confidence 45555555443 3444443331 123345554321 2489998 4999999999999977 65444443343444
Q ss_pred HHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCC-cCccchHH--HHHccCCCcEEEeeCCHHHHHHHHHHHHhc
Q 015415 171 LLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLG-AEHSQRLE--SYFQSIPGIQMVACSTPYNAKGLMKAAIRS 247 (407)
Q Consensus 171 ~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G-~tHsq~~e--a~~~~iPgl~V~~P~d~~e~~~~~~~a~~~ 247 (407)
.-++.-|.+ |+.. +.||+++.........| ..+ |.++ ++++.+--+ .+...+++++..++..|++.
T Consensus 87 ~N~l~gia~--A~~~-------~~Pvl~i~G~~~~~~~~~~~~-q~~d~~~l~~~vtk~-~~~v~~~~~i~~~l~~A~~~ 155 (595)
T PRK09107 87 TNAVTPLQD--ALMD-------SIPLVCITGQVPTHLIGSDAF-QECDTVGITRPCTKH-NWLVKDVNDLARVIHEAFHV 155 (595)
T ss_pred hHHHHHHHH--Hhhc-------CCCEEEEEcCCChhhcCCCCC-cccchhhhhhhheEE-EEEeCCHHHHHHHHHHHHHH
Confidence 445555542 3332 89999885322211112 123 4333 677766554 44567889999989888874
Q ss_pred -----CCCEEEeecccc
Q 015415 248 -----ENPVILFEHVLL 259 (407)
Q Consensus 248 -----~~Pv~ir~~r~~ 259 (407)
++||||-.+...
T Consensus 156 A~s~~~GPV~l~iP~Dv 172 (595)
T PRK09107 156 ATSGRPGPVVVDIPKDV 172 (595)
T ss_pred hcCCCCceEEEecCCCh
Confidence 689999877543
No 78
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.30 E-value=0.34 Score=52.25 Aligned_cols=124 Identities=14% Similarity=0.087 Sum_probs=77.8
Q ss_pred cchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec
Q 015415 123 VTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP 201 (407)
Q Consensus 123 ~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~ 201 (407)
+.+.+.+. .=|||.+- .|++++.||-|.|+. |...++.+.+...+.-++.-|.+ |+.. +.||+++..
T Consensus 44 l~dal~~~--~i~~i~~r-hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~~~gla~--A~~~-------~~Pvl~I~G 111 (570)
T PRK06725 44 VYDALYES--GLKHILTR-HEQAAIHAAEGYARASGKVGVVFATSGPGATNLVTGLAD--AYMD-------SIPLVVITG 111 (570)
T ss_pred HHHHHHhc--CCcEEEec-CHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHH--Hhhc-------CcCEEEEec
Confidence 34555432 34888885 999999999999988 54344333333344445555543 2322 799998853
Q ss_pred CCCCCCCCcCccchHH--HHHccCCCcEEEeeCCHHHHHHHHHHHHhc-----CCCEEEeecccc
Q 015415 202 GGVGRQLGAEHSQRLE--SYFQSIPGIQMVACSTPYNAKGLMKAAIRS-----ENPVILFEHVLL 259 (407)
Q Consensus 202 ~G~~~~~G~tHsq~~e--a~~~~iPgl~V~~P~d~~e~~~~~~~a~~~-----~~Pv~ir~~r~~ 259 (407)
.......+....|.++ .+++.+--+ .....+++++..+++.|++. ++||||-.+...
T Consensus 112 ~~~~~~~~~~~~q~~d~~~l~~~itk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 175 (570)
T PRK06725 112 QVATPLIGKDGFQEADVVGITVPVTKH-NYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDV 175 (570)
T ss_pred CCCcccccCCCCcccchhhhhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEccccch
Confidence 2211112211124443 788887655 45567899999999988874 689999877543
No 79
>PRK08322 acetolactate synthase; Reviewed
Probab=95.21 E-value=0.34 Score=51.69 Aligned_cols=124 Identities=12% Similarity=0.013 Sum_probs=77.4
Q ss_pred cchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCee-EEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec
Q 015415 123 VTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRP-IVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP 201 (407)
Q Consensus 123 ~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp-~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~ 201 (407)
+.+.+.+ - .=|++.+- .|++++.||.|.|+.--+| ++.+.....+.-++.-|.+ + +.. ++||+++..
T Consensus 30 l~dal~~-~-~i~~i~~~-hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~~~i~~-A-~~~-------~~Pll~i~g 97 (547)
T PRK08322 30 LLEALRD-S-SIKLILTR-HEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLVTGVAY-A-QLG-------GMPMVAITG 97 (547)
T ss_pred HHHHHHh-c-CCcEEEec-cHHHHHHHHHHHHHhhCCCEEEEECCCccHhHHHHHHHH-H-hhc-------CCCEEEEec
Confidence 4455532 2 34888884 9999999999999994334 3332233334445555543 2 322 799998852
Q ss_pred CCCCCCCCcCccchH--HHHHccCCCcEEEeeCCHHHHHHHHHHHHhc-----CCCEEEeecccc
Q 015415 202 GGVGRQLGAEHSQRL--ESYFQSIPGIQMVACSTPYNAKGLMKAAIRS-----ENPVILFEHVLL 259 (407)
Q Consensus 202 ~G~~~~~G~tHsq~~--ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~-----~~Pv~ir~~r~~ 259 (407)
.-.....+..+.|.. .++++.+-.+ .+...+++++..+++.|++. ++||+|-.+...
T Consensus 98 ~~~~~~~~~~~~q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 161 (547)
T PRK08322 98 QKPIKRSKQGSFQIVDVVAMMAPLTKW-TRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPEDI 161 (547)
T ss_pred cccccccCCCccccccHHHHhhhheeE-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhh
Confidence 211111122222443 3788877654 66778899988888888773 589999877643
No 80
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.14 E-value=0.37 Score=51.90 Aligned_cols=115 Identities=14% Similarity=0.052 Sum_probs=75.1
Q ss_pred CceEeccchhHHHHHHHHHHHhc-CCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCC--CCCc
Q 015415 134 LRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGR--QLGA 210 (407)
Q Consensus 134 ~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~--~~G~ 210 (407)
=|||.+- .|+++..||.|.|+. |...++.+.+...+.-++.-|.+ |+.. ++||+++....... +.+.
T Consensus 43 i~~i~~r-hE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n~l~gi~~--A~~~-------~~Pvl~i~G~~~~~~~~~~~ 112 (574)
T PRK07979 43 IDHVLVR-HEQAAVHMADGLARATGEVGVVLVTSGPGATNAITGIAT--AYMD-------SIPLVVLSGQVATSLIGYDA 112 (574)
T ss_pred ceEEEeC-cHHHHHHHHHHHHHHhCCceEEEECCCccHhhhHHHHHH--Hhhc-------CCCEEEEECCCChhccCCCC
Confidence 3888885 999999999999988 65555554444444545565543 2332 79999886322211 1222
Q ss_pred CccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhc-----CCCEEEeecccc
Q 015415 211 EHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRS-----ENPVILFEHVLL 259 (407)
Q Consensus 211 tHsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~-----~~Pv~ir~~r~~ 259 (407)
.|.....++++.+--+ .....+++++...++.|++. ++||||..+...
T Consensus 113 ~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~Dv 165 (574)
T PRK07979 113 FQECDMVGISRPVVKH-SFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDI 165 (574)
T ss_pred CceecHHHHhhcccce-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhh
Confidence 2211223788877664 55567899999999888873 689999877543
No 81
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=95.07 E-value=0.63 Score=50.09 Aligned_cols=121 Identities=14% Similarity=0.084 Sum_probs=75.4
Q ss_pred cchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec
Q 015415 123 VTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP 201 (407)
Q Consensus 123 ~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~ 201 (407)
+.+.+.+ . +-+++.+ ..|++++.||.|.|+. |...++.+.+...+.-++.-|.+ |+.. +.||+++..
T Consensus 45 l~~al~~-~-~i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GPG~~N~~~gl~~--A~~~-------~~Pvl~ItG 112 (571)
T PRK07710 45 LYDALYD-C-GIPHILT-RHEQGAIHAAEGYARISGKPGVVIATSGPGATNVVTGLAD--AMID-------SLPLVVFTG 112 (571)
T ss_pred HHHHHHh-c-CCcEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHH--Hhhc-------CCCEEEEec
Confidence 3455543 3 4688977 7999999999999988 53333333233334445565543 2332 799998853
Q ss_pred CCCCC--CCCcCccchHH--HHHccCCCcEEEeeCCHHHHHHHHHHHHhc-----CCCEEEeeccc
Q 015415 202 GGVGR--QLGAEHSQRLE--SYFQSIPGIQMVACSTPYNAKGLMKAAIRS-----ENPVILFEHVL 258 (407)
Q Consensus 202 ~G~~~--~~G~tHsq~~e--a~~~~iPgl~V~~P~d~~e~~~~~~~a~~~-----~~Pv~ir~~r~ 258 (407)
.-... +.+. + |.++ ++++.+--+ .+...+++++..+++.|++. ++||+|-.+..
T Consensus 113 ~~~~~~~~~~~-~-q~~d~~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 175 (571)
T PRK07710 113 QVATSVIGSDA-F-QEADIMGITMPVTKH-NYQVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKD 175 (571)
T ss_pred cCCccccCCCC-c-cccchhhhhhcccce-EEecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcChh
Confidence 21111 1122 2 3333 788877666 45667788888888888762 58999987654
No 82
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.05 E-value=0.4 Score=51.60 Aligned_cols=123 Identities=16% Similarity=0.102 Sum_probs=76.9
Q ss_pred cchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec
Q 015415 123 VTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP 201 (407)
Q Consensus 123 ~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~ 201 (407)
+.+.+.+.- .=|+|.+ -.|+++..||-|.|+. |...++.+.+...+.-++.-|.+ |+.. ++||+++..
T Consensus 33 l~~al~~~~-~i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~N~l~gl~~--A~~~-------~~Pvl~i~G 101 (574)
T PRK06466 33 IYDALFKQD-KVEHILV-RHEQAATHMADGYARATGKTGVVLVTSGPGATNAITGIAT--AYMD-------SIPMVVLSG 101 (574)
T ss_pred HHHHhhccC-CceEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHH--HHhc-------CCCEEEEec
Confidence 345553322 2478888 5999999999999988 43333333333344445565543 3332 799998853
Q ss_pred CCCCCCCC-cCccchHH--HHHccCCCcEEEeeCCHHHHHHHHHHHHhc-----CCCEEEeeccc
Q 015415 202 GGVGRQLG-AEHSQRLE--SYFQSIPGIQMVACSTPYNAKGLMKAAIRS-----ENPVILFEHVL 258 (407)
Q Consensus 202 ~G~~~~~G-~tHsq~~e--a~~~~iPgl~V~~P~d~~e~~~~~~~a~~~-----~~Pv~ir~~r~ 258 (407)
.......+ ..| |.++ .+++.+--+ .....++.++..+++.|++. ++||||-.+..
T Consensus 102 ~~~~~~~~~~~~-q~~d~~~l~~~itk~-s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06466 102 QVPSTLIGEDAF-QETDMVGISRPIVKH-SFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKD 164 (574)
T ss_pred CCCccccCCCcc-cccchhhhhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 21111111 124 4443 788887765 56667888888888887763 68999987764
No 83
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=94.96 E-value=0.34 Score=43.87 Aligned_cols=114 Identities=13% Similarity=0.127 Sum_probs=65.1
Q ss_pred hCCCceE-eccchh-HHHHHHHHHHHhcCCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCC
Q 015415 131 YGDLRVL-DTPIAE-NSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQ 207 (407)
Q Consensus 131 fgp~R~i-~~GIaE-~~~vg~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~ 207 (407)
..|.+|+ +.|..- -..+++|.|++++--||+++...-.-.+.....+-. +.. .++|++++. .++..+-
T Consensus 39 ~~~~~~~~~~g~g~mG~~l~~aiGa~la~~~~Vv~i~GDGsf~m~~~eL~t-a~~--------~~l~v~ivVlNN~~~g~ 109 (175)
T cd02009 39 DKTVRVFANRGASGIDGTLSTALGIALATDKPTVLLTGDLSFLHDLNGLLL-GKQ--------EPLNLTIVVINNNGGGI 109 (175)
T ss_pred CCCceEEecCCccchhhHHHHHHHHHhcCCCCEEEEEehHHHHHhHHHHHh-ccc--------cCCCeEEEEEECCCCch
Confidence 3478888 444322 235677888877755677765443222222333321 222 278877665 3332211
Q ss_pred -----C---Cc---C-----ccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 208 -----L---GA---E-----HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 208 -----~---G~---t-----Hsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
. +. . |.-.+.++.+++ |+.-+...+++|+...++++++.++|++|-
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe 171 (175)
T cd02009 110 FSLLPQASFEDEFERLFGTPQGLDFEHLAKAY-GLEYRRVSSLDELEQALESALAQDGPHVIE 171 (175)
T ss_pred heeccCCcccchhhhhhcCCCCCCHHHHHHHc-CCCeeeCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 00 0 111233444444 566677889999999999999989999873
No 84
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=94.89 E-value=0.48 Score=50.98 Aligned_cols=123 Identities=12% Similarity=0.078 Sum_probs=76.5
Q ss_pred cchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec
Q 015415 123 VTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP 201 (407)
Q Consensus 123 ~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~ 201 (407)
+.+.+.+.- .=|||.+- .|++++.||.|.|+. |...++.+.+...+.-++.-|.+ |+.. ++||+++..
T Consensus 39 l~dal~~~~-~i~~i~~r-hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gla~--A~~~-------~~Pvl~i~G 107 (566)
T PRK07282 39 LYDAIYNFE-GIRHILAR-HEQGALHEAEGYAKSTGKLGVAVVTSGPGATNAITGIAD--AMSD-------SVPLLVFTG 107 (566)
T ss_pred HHHHHhhcC-CceEEEec-CHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHH--Hhhc-------CCCEEEEec
Confidence 345553321 23899985 999999999999988 64444443344444556666643 2332 799999863
Q ss_pred CCCCCCCCc-CccchHH--HHHccCCCcEEEeeCCHHHHHHHHHHHHhc-----CCCEEEeeccc
Q 015415 202 GGVGRQLGA-EHSQRLE--SYFQSIPGIQMVACSTPYNAKGLMKAAIRS-----ENPVILFEHVL 258 (407)
Q Consensus 202 ~G~~~~~G~-tHsq~~e--a~~~~iPgl~V~~P~d~~e~~~~~~~a~~~-----~~Pv~ir~~r~ 258 (407)
.......|. .+ |.++ ++++.+-.+. ....+++++..+++.|++. ++||||-.+..
T Consensus 108 ~~~~~~~~~~~~-q~~d~~~~~~~itk~s-~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 170 (566)
T PRK07282 108 QVARAGIGKDAF-QEADIVGITMPITKYN-YQIRETADIPRIITEAVHIATTGRPGPVVIDLPKD 170 (566)
T ss_pred ccccccCCCCCc-cccChhchhcCCCcee-EEcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCChh
Confidence 211111121 23 3333 6788776653 3556788888888888773 58999987754
No 85
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=94.80 E-value=0.35 Score=43.92 Aligned_cols=111 Identities=15% Similarity=0.151 Sum_probs=64.9
Q ss_pred CCceEeccc--hhHHHHHHHHHHHhc-CCeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCC
Q 015415 133 DLRVLDTPI--AENSFTGMGIGAAMT-GLRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQ 207 (407)
Q Consensus 133 p~R~i~~GI--aE~~~vg~A~GlA~~-G~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~ 207 (407)
|.||+..+- +=-..+..|.|++++ .-+++++...- .|++-. ..|. .+... ++|++++. .++..+.
T Consensus 38 ~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~m~~-~eL~-ta~~~--------~l~vi~vV~NN~~~g~ 107 (177)
T cd02010 38 PNTCLISNGLATMGVALPGAIGAKLVYPDRKVVAVSGDGGFMMNS-QELE-TAVRL--------KIPLVVLIWNDNGYGL 107 (177)
T ss_pred CCCEEeCCCChhhhhHHHHHHHHHHhCCCCcEEEEEcchHHHhHH-HHHH-HHHHH--------CCCeEEEEEECCcchH
Confidence 788987632 112344577888876 34666665443 333333 3332 23332 78888775 3332211
Q ss_pred C--------Cc-Cc----cchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 208 L--------GA-EH----SQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 208 ~--------G~-tH----sq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
. +. .+ .-.+..+.+.+ |++-+...+++|+...++++++.++|.+|-
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 166 (177)
T cd02010 108 IKWKQEKEYGRDSGVDFGNPDFVKYAESF-GAKGYRIESADDLLPVLERALAADGVHVID 166 (177)
T ss_pred HHHHHHHhcCCcccCcCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 10 11 01222444444 677788899999999999999999999984
No 86
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.79 E-value=0.54 Score=50.50 Aligned_cols=112 Identities=15% Similarity=0.121 Sum_probs=73.3
Q ss_pred CceEeccchhHHHHHHHHHHHhc-CCeeEEE-ecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCCc-
Q 015415 134 LRVLDTPIAENSFTGMGIGAAMT-GLRPIVE-GMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGA- 210 (407)
Q Consensus 134 ~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~-t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G~- 210 (407)
=+++.+- .|++++.||.|.|+. |...++. |..+.+ .-++.-|.+ |+.. ++||+++.........|.
T Consensus 42 i~~v~~r-hE~~A~~~Adgyar~tg~~gv~~~t~GpG~-~n~~~gla~--A~~~-------~~Pvl~i~G~~~~~~~~~~ 110 (563)
T PRK08527 42 FKHILTR-HEQAAVHAADGYARASGKVGVAIVTSGPGF-TNAVTGLAT--AYMD-------SIPLVLISGQVPNSLIGTD 110 (563)
T ss_pred CeEEEec-cHHHHHHHHHHHHhhhCCCEEEEECCCCcH-HHHHHHHHH--Hhhc-------CCCEEEEecCCCccccCCC
Confidence 3888885 999999999999987 5444433 334444 445666643 3332 799998853211111121
Q ss_pred CccchHH--HHHccCCCcEEEeeCCHHHHHHHHHHHHhc-----CCCEEEeeccc
Q 015415 211 EHSQRLE--SYFQSIPGIQMVACSTPYNAKGLMKAAIRS-----ENPVILFEHVL 258 (407)
Q Consensus 211 tHsq~~e--a~~~~iPgl~V~~P~d~~e~~~~~~~a~~~-----~~Pv~ir~~r~ 258 (407)
.+ |.++ ++++.+--+ .....+++++..+++.|++. ++||||-.+..
T Consensus 111 ~~-q~~d~~~~~~~~tk~-s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~D 163 (563)
T PRK08527 111 AF-QEIDAVGISRPCVKH-NYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKD 163 (563)
T ss_pred CC-cccchhhhhhcccce-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 23 4443 688877654 45678999999999998873 47999987654
No 87
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=94.74 E-value=0.65 Score=50.20 Aligned_cols=151 Identities=15% Similarity=0.144 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEEecc
Q 015415 88 LLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGMN 166 (407)
Q Consensus 88 ~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~~ 166 (407)
+..+++.+.|.++.- +.|+.+-.+- ...+.+.+.+ - .=|+|.+- .|++++.||.|.|+. |...++.+.+
T Consensus 7 ~~~~~l~~~L~~~GV--~~vFGvpG~~-----~~~l~dal~~-~-~i~~i~~r-hE~~A~~~Adgyar~tg~~gv~~~t~ 76 (588)
T PRK07525 7 TPSEAFVETLQAHGI--THAFGIIGSA-----FMDASDLFPP-A-GIRFIDVA-HEQNAGHMADGYTRVTGRMGMVIGQN 76 (588)
T ss_pred cHHHHHHHHHHHcCC--CEEEEeCCCc-----hHHHHHHHhc-c-CCCEEEec-CHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 344555555543311 4455543332 1233444432 2 24888885 999999999999988 6544444434
Q ss_pred hhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCC-cCccchHH--HHHccCCCcEEEeeCCHHHHHHHHHH
Q 015415 167 MGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLG-AEHSQRLE--SYFQSIPGIQMVACSTPYNAKGLMKA 243 (407)
Q Consensus 167 ~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G-~tHsq~~e--a~~~~iPgl~V~~P~d~~e~~~~~~~ 243 (407)
...+.-++.-|.+ |+.. ++||+++...-.....+ ..+ |.++ .+++.+-.+ .+...+++++...++.
T Consensus 77 GPG~~n~~~gi~~--A~~~-------~~Pvl~I~g~~~~~~~~~~~~-q~~d~~~l~~~~tk~-~~~i~~~~~~~~~i~r 145 (588)
T PRK07525 77 GPGITNFVTAVAT--AYWA-------HTPVVLVTPQAGTKTIGQGGF-QEAEQMPMFEDMTKY-QEEVRDPSRMAEVLNR 145 (588)
T ss_pred CccHHHHHHHHHH--Hhhc-------CCCEEEEeCCCCcccCCCCCC-cccchhhhhhhheeE-EEECCCHHHHHHHHHH
Confidence 3344445555542 3332 89999986321111111 124 3333 778876655 5566788888887777
Q ss_pred HHh----cCCCEEEeecccc
Q 015415 244 AIR----SENPVILFEHVLL 259 (407)
Q Consensus 244 a~~----~~~Pv~ir~~r~~ 259 (407)
|++ .++||+|-.+...
T Consensus 146 A~~~A~~~~GPV~i~iP~Dv 165 (588)
T PRK07525 146 VFDKAKRESGPAQINIPRDY 165 (588)
T ss_pred HHHHHhcCCCCEEEEcChhH
Confidence 775 4789999877643
No 88
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=94.63 E-value=1.1 Score=40.02 Aligned_cols=111 Identities=19% Similarity=0.077 Sum_probs=68.4
Q ss_pred CceEeccchhHHHHHHHHHHHhcCCeeEEEec-chhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCC--CCCc
Q 015415 134 LRVLDTPIAENSFTGMGIGAAMTGLRPIVEGM-NMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGR--QLGA 210 (407)
Q Consensus 134 ~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~-~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~--~~G~ 210 (407)
=||+.+- .|+++..||.|.++.. +|-++.. ....+.-+..-|.+. +.. +.||+++....... +.+.
T Consensus 36 i~~i~~r-hE~~A~~mA~gyar~t-~~gv~~~t~GpG~~n~~~gl~~A--~~~-------~~Pvl~i~g~~~~~~~~~~~ 104 (162)
T cd07038 36 LRWVGNC-NELNAGYAADGYARVK-GLGALVTTYGVGELSALNGIAGA--YAE-------HVPVVHIVGAPSTKAQASGL 104 (162)
T ss_pred ceEEeeC-CHHHHHHHHHHHHHhh-CCEEEEEcCCccHHHHHHHHHHH--HHc-------CCCEEEEecCCCcccccccc
Confidence 4777774 9999999999999996 4444322 233444566666542 222 79999986322111 1111
Q ss_pred -Ccc----chH---HHHHccCCCcEEEeeCCHHHHHHHHHHHHh----cCCCEEEeec
Q 015415 211 -EHS----QRL---ESYFQSIPGIQMVACSTPYNAKGLMKAAIR----SENPVILFEH 256 (407)
Q Consensus 211 -tHs----q~~---ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~~ 256 (407)
.|+ |.+ ..+++.+-.+ .....+++++..+++.|++ .++||+|-.+
T Consensus 105 ~~~~~~~~~~~~d~~~~~~~~tk~-~~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP 161 (162)
T cd07038 105 LLHHTLGDGDFDVFLKMFEEITCA-AARLTDPENAAEEIDRVLRTALRESRPVYIEIP 161 (162)
T ss_pred ceeecccccchHHHHHHHHhheeE-EEEeCCHHHHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 120 112 2677776655 4555688888888887776 3689998654
No 89
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=94.63 E-value=0.65 Score=49.93 Aligned_cols=110 Identities=14% Similarity=0.019 Sum_probs=70.7
Q ss_pred ceEeccchhHHHHHHHHHHHhcCCeeEEE--ecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCC--CCCc
Q 015415 135 RVLDTPIAENSFTGMGIGAAMTGLRPIVE--GMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGR--QLGA 210 (407)
Q Consensus 135 R~i~~GIaE~~~vg~A~GlA~~G~rp~~~--t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~--~~G~ 210 (407)
|+|.+ ..|++++.||.|.|+.--+|-++ |..+.. .-++.-|.+ |+.. ++||+++...-... +.+.
T Consensus 45 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~-~N~l~gi~~--A~~~-------~~Pvl~i~G~~~~~~~~~~~ 113 (572)
T PRK06456 45 RHVLM-RHEQAAAHAADGYARASGVPGVCTATSGPGT-TNLVTGLIT--AYWD-------SSPVIAITGQVPRSVMGKMA 113 (572)
T ss_pred eEEEe-CcHHHHHHHHHHHHHhhCCCEEEEeCCCCCH-HHHHHHHHH--HHhh-------CCCEEEEecCCCccccCCCC
Confidence 78888 49999999999999984344333 334444 445565643 3332 79999885321111 1222
Q ss_pred CccchH--HHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----cCCCEEEeeccc
Q 015415 211 EHSQRL--ESYFQSIPGIQMVACSTPYNAKGLMKAAIR-----SENPVILFEHVL 258 (407)
Q Consensus 211 tHsq~~--ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~-----~~~Pv~ir~~r~ 258 (407)
+ |.+ .++++.+--+ .+...+++++...++.|++ .++||+|-.+..
T Consensus 114 -~-q~~d~~~i~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 165 (572)
T PRK06456 114 -F-QEADAMGVFENVTKY-VIGIKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRD 165 (572)
T ss_pred -c-cccchhhhhhcccee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence 2 333 3788877666 4445788888888888876 258999987754
No 90
>PLN02470 acetolactate synthase
Probab=94.61 E-value=0.57 Score=50.60 Aligned_cols=113 Identities=14% Similarity=0.045 Sum_probs=72.8
Q ss_pred CceEeccchhHHHHHHHHHHHhc-CCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCCc-C
Q 015415 134 LRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGA-E 211 (407)
Q Consensus 134 ~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G~-t 211 (407)
=|++.+ -.|++++.||-|.|+. |...++.+.+...+.-++.-|.+ |+.. ++||+++.........+. .
T Consensus 52 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gia~--A~~~-------~~Pvl~I~G~~~~~~~~~~~ 121 (585)
T PLN02470 52 IRNVLC-RHEQGEVFAAEGYAKASGKVGVCIATSGPGATNLVTGLAD--ALLD-------SVPLVAITGQVPRRMIGTDA 121 (585)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHH--HHhc-------CCcEEEEecCCChhhcCCCc
Confidence 478888 5999999999999988 54444433344445556666643 3332 799998853222211121 1
Q ss_pred ccchHH--HHHccCCCcEEEeeCCHHHHHHHHHHHHhc-----CCCEEEeeccc
Q 015415 212 HSQRLE--SYFQSIPGIQMVACSTPYNAKGLMKAAIRS-----ENPVILFEHVL 258 (407)
Q Consensus 212 Hsq~~e--a~~~~iPgl~V~~P~d~~e~~~~~~~a~~~-----~~Pv~ir~~r~ 258 (407)
+ |.++ ++++.+-.+ -+...+++++..+++.|++. ++||+|-.+..
T Consensus 122 ~-q~~d~~~l~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D 173 (585)
T PLN02470 122 F-QETPIVEVTRSITKH-NYLVMDVEDIPRVIREAFFLASSGRPGPVLVDIPKD 173 (585)
T ss_pred C-cccchhhhhhhheEE-EEEcCCHHHHHHHHHHHHHHhcCCCCCeEEEEecCc
Confidence 2 4333 677776544 34456899999999988873 58999987654
No 91
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=94.59 E-value=0.8 Score=41.47 Aligned_cols=114 Identities=14% Similarity=0.199 Sum_probs=66.9
Q ss_pred hhhCCCceEeccc-hhH-HHHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCC
Q 015415 129 DKYGDLRVLDTPI-AEN-SFTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGG 203 (407)
Q Consensus 129 ~~fgp~R~i~~GI-aE~-~~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G 203 (407)
-+. |.+|+..+. .=. ..++.|.|++++. -+++++...- .|++-..| +. .+... ++|++++. .+|
T Consensus 38 ~~~-~~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i~GDG~f~~~~~e-l~-t~~~~--------~lp~~~iv~NN~ 106 (178)
T cd02014 38 MNG-KQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALSGDGGFAMLMGD-LI-TAVKY--------NLPVIVVVFNNS 106 (178)
T ss_pred cCC-CCcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEEEcchHHHhhHHH-HH-HHHHh--------CCCcEEEEEECC
Confidence 344 778887643 221 2555777777764 3455554442 34443333 43 24433 78877665 443
Q ss_pred CCC---------C---CCcC-ccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 204 VGR---------Q---LGAE-HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 204 ~~~---------~---~G~t-Hsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
..+ . .+.. +...+..+.... |++.+...+++|+...++++++.++|++|-
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~~l~~a~~~~~p~lie 169 (178)
T cd02014 107 DLGFIKWEQEVMGQPEFGVDLPNPDFAKIAEAM-GIKGIRVEDPDELEAALDEALAADGPVVID 169 (178)
T ss_pred chhHHHHHHHHhcCCceeccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 221 0 1111 112333555555 777888999999999999999989999884
No 92
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=94.55 E-value=0.4 Score=43.04 Aligned_cols=112 Identities=20% Similarity=0.133 Sum_probs=65.9
Q ss_pred CCceEeccc--hhHHHHHHHHHHHhcCC-eeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCCC
Q 015415 133 DLRVLDTPI--AENSFTGMGIGAAMTGL-RPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQL 208 (407)
Q Consensus 133 p~R~i~~GI--aE~~~vg~A~GlA~~G~-rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~~ 208 (407)
|.+|+..+. +=-..+++|+|++++.. +++++...-.-++.....+. .++.. ++|++++. .++..+..
T Consensus 38 p~~~~~~~~~g~mG~~lp~AiGa~la~~~~~vv~i~GDG~f~~~~~el~-ta~~~--------~lpv~ivv~NN~~~~~~ 108 (172)
T cd02004 38 PRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLVEGDGAFGFSGMELE-TAVRY--------NLPIVVVVGNNGGWYQG 108 (172)
T ss_pred CCcEecCCCCCcccchHHHHHHHHHhCCCCeEEEEEcchhhcCCHHHHH-HHHHc--------CCCEEEEEEECcccccc
Confidence 889988652 23345667888888753 66666544322222334442 33332 78977665 33211110
Q ss_pred ---------CcC------ccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 209 ---------GAE------HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 209 ---------G~t------Hsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
+.. +.-.+..+.++. |+..+...+.+|+..+++++...++|++|-
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 168 (172)
T cd02004 109 LDGQQLSYGLGLPVTTLLPDTRYDLVAEAF-GGKGELVTTPEELKPALKRALASGKPALIN 168 (172)
T ss_pred hhhhhhhccCCCceeccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHHcCCCEEEE
Confidence 000 111222444444 677778889999999999999888999883
No 93
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=94.53 E-value=1.1 Score=48.01 Aligned_cols=152 Identities=14% Similarity=0.038 Sum_probs=87.2
Q ss_pred chHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeE-EEec
Q 015415 87 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPI-VEGM 165 (407)
Q Consensus 87 ~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~-~~t~ 165 (407)
++..+++.+.|.++ +=+.++.-+... ...+.+.+.+.- .=|++.+ ..|++++.||.|.|+..-+|- +.+.
T Consensus 13 ~~~~~~l~~~L~~~---GV~~vFgvpG~~----~~~l~dal~~~~-~i~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t 83 (564)
T PRK08155 13 FTGAELIVRLLERQ---GIRIVTGIPGGA----ILPLYDALSQST-QIRHILA-RHEQGAGFIAQGMARTTGKPAVCMAC 83 (564)
T ss_pred ccHHHHHHHHHHHc---CCCEEEeCCCcc----cHHHHHHHhccC-CceEEEe-ccHHHHHHHHHHHHHHcCCCeEEEEC
Confidence 34455555555433 344444432211 123345553321 2488887 599999999999999955553 3322
Q ss_pred chhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCC-cCccchHH--HHHccCCCcEEEeeCCHHHHHHHHH
Q 015415 166 NMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLG-AEHSQRLE--SYFQSIPGIQMVACSTPYNAKGLMK 242 (407)
Q Consensus 166 ~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G-~tHsq~~e--a~~~~iPgl~V~~P~d~~e~~~~~~ 242 (407)
+...+.-++.-|.+ |+.. +.||+++...-.....+ ..+ |.++ ++++.+--+ .....+++++..+++
T Consensus 84 ~GpG~~N~l~gl~~--A~~~-------~~Pvl~i~G~~~~~~~~~~~~-q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~ 152 (564)
T PRK08155 84 SGPGATNLVTAIAD--ARLD-------SIPLVCITGQVPASMIGTDAF-QEVDTYGISIPITKH-NYLVRDIEELPQVIS 152 (564)
T ss_pred CCCcHHHHHHHHHH--HHhc-------CCCEEEEeccCCcccccCCCc-cccchhhhhhccceE-EEEcCCHHHHHHHHH
Confidence 33344445666643 3332 89999885221111111 123 3333 678877655 334468888888888
Q ss_pred HHHhc-----CCCEEEeeccc
Q 015415 243 AAIRS-----ENPVILFEHVL 258 (407)
Q Consensus 243 ~a~~~-----~~Pv~ir~~r~ 258 (407)
.|++. ++||+|-.+..
T Consensus 153 ~A~~~a~~~~~GPV~i~iP~D 173 (564)
T PRK08155 153 DAFRIAQSGRPGPVWIDIPKD 173 (564)
T ss_pred HHHHHHhcCCCCcEEEEcCHh
Confidence 88762 58999986654
No 94
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=94.37 E-value=1.4 Score=42.09 Aligned_cols=88 Identities=17% Similarity=0.137 Sum_probs=52.8
Q ss_pred CeeEEEecchhH-HHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCCCCcCcc----------------------
Q 015415 158 LRPIVEGMNMGF-LLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQLGAEHS---------------------- 213 (407)
Q Consensus 158 ~rp~~~t~~~~f-~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~~G~tHs---------------------- 213 (407)
-||+++...-.- .+-.+..|. .+... ++|++++. .++.++..|..++
T Consensus 80 ~r~VV~i~GDG~~~~m~~~eL~-ta~~~--------~~pv~~vVlNN~~yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~ 150 (235)
T cd03376 80 DITVVAFAGDGGTADIGFQALS-GAAER--------GHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSFGKK 150 (235)
T ss_pred CCeEEEEEcCchHHhhHHHHHH-HHHHc--------CCCeEEEEECCcccccCCCCCCCCCCCCCEeecCCCCccccccc
Confidence 578887544322 345566664 34443 78888776 4443331111100
Q ss_pred -c--hHHHHHcc--CCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 214 -Q--RLESYFQS--IPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 214 -q--~~ea~~~~--iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
. .+..+.++ .+++..+...+++|+..+++++++.++|++|-
T Consensus 151 ~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~~~~gP~lIe 196 (235)
T cd03376 151 QPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKALSIEGPAYIH 196 (235)
T ss_pred cccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 1 22233333 34444567899999999999999999999873
No 95
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=94.24 E-value=1.5 Score=41.81 Aligned_cols=113 Identities=12% Similarity=0.119 Sum_probs=63.0
Q ss_pred CCceEeccchhHHHHHHHHHHH----hc------CCeeEEEecchh-HHHHHHHHHHHhhhhhchhcCCcccccEEEEe-
Q 015415 133 DLRVLDTPIAENSFTGMGIGAA----MT------GLRPIVEGMNMG-FLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG- 200 (407)
Q Consensus 133 p~R~i~~GIaE~~~vg~A~GlA----~~------G~rp~~~t~~~~-f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~- 200 (407)
|.++++..+.-...+|.+..+| ++ --+++++...-. |++..+..+.+.+ .. ++|++++.
T Consensus 52 ~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g~~~l~ta~-~~--------~l~i~ivVl 122 (237)
T cd02018 52 AVPWVNSLFEDANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIGFGALSHSL-FR--------GEDITVIVL 122 (237)
T ss_pred CCCeeeccccCHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhccHHHHHHHH-Hc--------CCCeEEEEE
Confidence 5677777655556666544444 33 136677643432 2223344443332 22 78877776
Q ss_pred cCCCCCCCCcC--------------------ccchHHHHHcc--CCCcEEEeeCCHHHHHHHHHHHHh-cCCCEEEe
Q 015415 201 PGGVGRQLGAE--------------------HSQRLESYFQS--IPGIQMVACSTPYNAKGLMKAAIR-SENPVILF 254 (407)
Q Consensus 201 ~~G~~~~~G~t--------------------Hsq~~ea~~~~--iPgl~V~~P~d~~e~~~~~~~a~~-~~~Pv~ir 254 (407)
.++.++..+.+ +.-.+..+.++ +++.....+.++.|++.+++++++ .++|++|-
T Consensus 123 NN~~yg~~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~al~~al~~~~GP~lI~ 199 (237)
T cd02018 123 DNEVYSNTGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVVKEAISRTDGPTFIH 199 (237)
T ss_pred CCccccCCCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 33322211111 11123334443 444444469999999999999998 99999884
No 96
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=94.12 E-value=1 Score=48.38 Aligned_cols=122 Identities=17% Similarity=0.097 Sum_probs=75.2
Q ss_pred cchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec
Q 015415 123 VTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP 201 (407)
Q Consensus 123 ~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~ 201 (407)
+.+.+.+ - .=+++.+ -.|++++.||-|.|+. |...++.+.+...+.-++.-|.+ |+.. ++||+++..
T Consensus 37 l~~al~~-~-~i~~v~~-~hE~~A~~~Adgyar~tg~~~v~~~t~GpG~~n~~~gl~~--A~~~-------~~Pvl~i~G 104 (561)
T PRK06048 37 VYDELYD-S-DLRHILV-RHEQAAAHAADGYARATGKVGVCVATSGPGATNLVTGIAT--AYMD-------SVPIVALTG 104 (561)
T ss_pred HHHHHhh-C-CCeEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHHHH--Hhhc-------CCCEEEEec
Confidence 3455533 2 3488988 5999999999999988 64444333333344445666643 2322 799998853
Q ss_pred CCCCCCCCc-CccchHH--HHHccCCCcEEEeeCCHHHHHHHHHHHHhc-----CCCEEEeeccc
Q 015415 202 GGVGRQLGA-EHSQRLE--SYFQSIPGIQMVACSTPYNAKGLMKAAIRS-----ENPVILFEHVL 258 (407)
Q Consensus 202 ~G~~~~~G~-tHsq~~e--a~~~~iPgl~V~~P~d~~e~~~~~~~a~~~-----~~Pv~ir~~r~ 258 (407)
.......|. .+ |..+ ++++.+--+ .+...+++++..+++.|++. ++||||-.+..
T Consensus 105 ~~~~~~~~~~~~-q~~d~~~~~~~itk~-s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~d 167 (561)
T PRK06048 105 QVPRSMIGNDAF-QEADITGITMPITKH-NYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKD 167 (561)
T ss_pred cCCccccCCCCc-cccchhhhccCcceE-EEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecChh
Confidence 211111111 22 3333 677776544 34457888888888888772 58999987754
No 97
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=94.04 E-value=1.4 Score=43.50 Aligned_cols=143 Identities=12% Similarity=0.058 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchh---HHHHHHHHHHHhcC-CeeEEEe
Q 015415 89 LFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAE---NSFTGMGIGAAMTG-LRPIVEG 164 (407)
Q Consensus 89 ~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE---~~~vg~A~GlA~~G-~rp~~~t 164 (407)
.-.++.++|.++....++.+++ .|+|.++ +. | ++++..--- -..+.+|.|++++. -+++++.
T Consensus 12 i~~~~~~a~~~l~~~p~d~iiv-sdiGc~~-----------~~-~-~~l~~~~~~t~mG~alPaAiGaklA~Pd~~VVai 77 (287)
T TIGR02177 12 ILSALQRALAELNLDPEQVVVV-SGIGCSA-----------KT-P-HYVNVNGFHGLHGRALPVATGIKLANPHLKVIVV 77 (287)
T ss_pred HHHHHHHHHHHhcCCCCCEEEE-ECCCccc-----------cc-C-CeEecCCcccccccHHHHHHHHHHHCCCCcEEEE
Confidence 4567778887775544555444 5776422 12 4 555543211 23566788888874 3666664
Q ss_pred cch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCC---CCC-CCCcC-----------c---c--chHH--HHH
Q 015415 165 MNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGG---VGR-QLGAE-----------H---S--QRLE--SYF 220 (407)
Q Consensus 165 ~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G---~~~-~~G~t-----------H---s--q~~e--a~~ 220 (407)
..- .|+.-....+.+ ++.. ++||+++. .++ ..+ +.-++ + . ...+ ++.
T Consensus 78 ~GDG~f~~mg~~eL~t-A~r~--------nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A 148 (287)
T TIGR02177 78 GGDGDLYGIGGNHFVA-AGRR--------NVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAIA 148 (287)
T ss_pred eCchHHHhccHHHHHH-HHHh--------CcCeEEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCCHHHHHHh
Confidence 442 222233444543 4443 78888776 332 221 11000 0 0 0112 333
Q ss_pred ccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 221 QSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 221 ~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
....-.-.....+++|+..++++|++.++|++|-
T Consensus 149 ~g~g~va~~~~~~~~eL~~ai~~Al~~~GpslIe 182 (287)
T TIGR02177 149 LGYTFVARGFSGDVAHLKEIIKEAINHKGYALVD 182 (287)
T ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 4432222333699999999999999999999884
No 98
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=93.93 E-value=1.7 Score=46.22 Aligned_cols=113 Identities=12% Similarity=0.060 Sum_probs=72.0
Q ss_pred CceEeccchhHHHHHHHHHHHhcCCeeEEEec-chhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCC--CCCc
Q 015415 134 LRVLDTPIAENSFTGMGIGAAMTGLRPIVEGM-NMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGR--QLGA 210 (407)
Q Consensus 134 ~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~-~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~--~~G~ 210 (407)
=||+.+ -.|++++.||.|.|+..-+|-++.. ....+.-++.-|.+ |+.. +.||+++....... +.+.
T Consensus 49 i~~i~~-~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~~N~~~gia~--A~~~-------~~Pvl~i~g~~~~~~~~~~~ 118 (530)
T PRK07092 49 FRYVLG-LQEAVVVGMADGYAQATGNAAFVNLHSAAGVGNAMGNLFT--AFKN-------HTPLVITAGQQARSILPFEP 118 (530)
T ss_pred CCEEEE-ccHHHHHHHHHHHHHHhCCceEEEeccCchHHHHHHHHHH--Hhhc-------CCCEEEEecCCcccccCccc
Confidence 388877 5999999999999998545544422 22333445555543 2322 79999875322221 2223
Q ss_pred CccchH--HHHHccCCCcEEEeeCCHHHHHHHHHHHHhc-----CCCEEEeeccc
Q 015415 211 EHSQRL--ESYFQSIPGIQMVACSTPYNAKGLMKAAIRS-----ENPVILFEHVL 258 (407)
Q Consensus 211 tHsq~~--ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~-----~~Pv~ir~~r~ 258 (407)
.+ |.. ..+++.+-.+.. ...+++++...++.|++. ++||+|-.+..
T Consensus 119 ~~-~~~d~~~l~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d 171 (530)
T PRK07092 119 FL-AAVQAAELPKPYVKWSI-EPARAEDVPAAIARAYHIAMQPPRGPVFVSIPYD 171 (530)
T ss_pred hh-cccCHHHhhccccccee-ecCCHHHHHHHHHHHHHHHhcCCCCcEEEEccHH
Confidence 22 322 378888877644 447788888888888762 57999976654
No 99
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.92 E-value=1.1 Score=48.28 Aligned_cols=122 Identities=15% Similarity=0.076 Sum_probs=75.9
Q ss_pred cchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec
Q 015415 123 VTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP 201 (407)
Q Consensus 123 ~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~ 201 (407)
+.+.+.+.- .=|+|.+- .|++++.||.|.|+. |...++.+.+...+.-+..-|.+ |+.. ++||+++..
T Consensus 33 l~~al~~~~-~i~~v~~r-hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~l~gia~--A~~~-------~~Pvl~i~G 101 (572)
T PRK08979 33 IYDALHEKS-GIEHILVR-HEQAAVHMADGYARATGKVGVVLVTSGPGATNTITGIAT--AYMD-------SIPMVVLSG 101 (572)
T ss_pred HHHHHhhcC-CCeEEEeC-cHHHHHHHHHHHHHHhCCCeEEEECCCchHhHHHHHHHH--Hhhc-------CCCEEEEec
Confidence 345553321 24789885 999999999999988 64444443333334445555543 2332 799998853
Q ss_pred CCCCC--CCCcCccchH--HHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----cCCCEEEeeccc
Q 015415 202 GGVGR--QLGAEHSQRL--ESYFQSIPGIQMVACSTPYNAKGLMKAAIR-----SENPVILFEHVL 258 (407)
Q Consensus 202 ~G~~~--~~G~tHsq~~--ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~-----~~~Pv~ir~~r~ 258 (407)
..... +.+. + |.+ .++++.+--+ .....+++++...++.|++ .++||||-.+..
T Consensus 102 ~~~~~~~~~~~-~-q~~d~~~~~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (572)
T PRK08979 102 QVPSNLIGNDA-F-QECDMIGISRPVVKH-SFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKD 164 (572)
T ss_pred CCCccccCCCC-C-cccchhHHhhhceeE-EEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecCHh
Confidence 21111 1222 3 333 3788877655 4556688998888888886 258999986654
No 100
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=93.83 E-value=0.73 Score=42.01 Aligned_cols=111 Identities=15% Similarity=0.156 Sum_probs=65.4
Q ss_pred CCceEeccc-h-hHHHHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCC-
Q 015415 133 DLRVLDTPI-A-ENSFTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGR- 206 (407)
Q Consensus 133 p~R~i~~GI-a-E~~~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~- 206 (407)
|.+|+..+- . =-..++.|.|++++. -+++++...- .|++-. ..|-. ++.. ++|+++++ .++..+
T Consensus 40 ~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~~~~-~eL~t-a~~~--------~lpi~ivV~nN~~~~~ 109 (186)
T cd02015 40 PRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICIDGDGSFQMNI-QELAT-AAQY--------NLPVKIVILNNGSLGM 109 (186)
T ss_pred CCeEEeCCCccchhchHHHHHHHHHhCCCCeEEEEEcccHHhccH-HHHHH-HHHh--------CCCeEEEEEECCccHH
Confidence 788887542 1 123566788888774 3555554443 344333 33432 3433 78887765 333221
Q ss_pred ----------C-CCcCc---cchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 207 ----------Q-LGAEH---SQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 207 ----------~-~G~tH---sq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
. ....+ .-.+..+.+++ |+.-+...+++|+..+++++++.++|++|-
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 170 (186)
T cd02015 110 VRQWQELFYEGRYSHTTLDSNPDFVKLAEAY-GIKGLRVEKPEELEAALKEALASDGPVLLD 170 (186)
T ss_pred HHHHHHHHcCCceeeccCCCCCCHHHHHHHC-CCceEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 01111 11233455554 666777889999999999999989999984
No 101
>PRK07524 hypothetical protein; Provisional
Probab=93.82 E-value=1.1 Score=47.88 Aligned_cols=113 Identities=12% Similarity=0.114 Sum_probs=74.0
Q ss_pred CceEeccchhHHHHHHHHHHHhcCCee-EEE-ecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCC---CC-
Q 015415 134 LRVLDTPIAENSFTGMGIGAAMTGLRP-IVE-GMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVG---RQ- 207 (407)
Q Consensus 134 ~R~i~~GIaE~~~vg~A~GlA~~G~rp-~~~-t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~---~~- 207 (407)
=|+|.+- .|++++.||-|.|+..-+| ++. |..+. +.-++.-|.+ |+.. ++||+++...-.. +.
T Consensus 40 i~~i~~~-hE~~A~~mAdgyar~tg~~gv~~~t~GpG-~~n~~~gi~~--A~~~-------~~Pvl~i~G~~~~~~~~~~ 108 (535)
T PRK07524 40 IRHVTPR-HEQGAGFMADGYARVSGKPGVCFIITGPG-MTNIATAMGQ--AYAD-------SIPMLVISSVNRRASLGKG 108 (535)
T ss_pred CcEEEec-cHHHHHHHHHHHHHHhCCCeEEEECCCcc-HHHHHHHHHH--HHhc-------CCCEEEEeCCCChhhcCCC
Confidence 4888885 9999999999999884443 333 33444 4445565543 3332 8999988521111 11
Q ss_pred CCcCccchH--HHHHccCCCcEEEeeCCHHHHHHHHHHHHhc-----CCCEEEeecccc
Q 015415 208 LGAEHSQRL--ESYFQSIPGIQMVACSTPYNAKGLMKAAIRS-----ENPVILFEHVLL 259 (407)
Q Consensus 208 ~G~tHsq~~--ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~-----~~Pv~ir~~r~~ 259 (407)
.+..| +.. ..+++.+--+ .+...+++++...++.|++. ++||+|-.++..
T Consensus 109 ~~~~~-~~~d~~~l~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (535)
T PRK07524 109 RGKLH-ELPDQRAMVAGVAAF-SHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLDV 165 (535)
T ss_pred Ccccc-ccccHHHHhhhhcee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeCHhH
Confidence 12334 533 3788877654 67778899988888888762 689999877643
No 102
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=93.76 E-value=1.1 Score=47.90 Aligned_cols=113 Identities=12% Similarity=0.053 Sum_probs=72.0
Q ss_pred CceEeccchhHHHHHHHHHHHhc-CCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCC-CcC
Q 015415 134 LRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQL-GAE 211 (407)
Q Consensus 134 ~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~-G~t 211 (407)
=|++.+- .|+++..||-|.|+. |...++.+.+...+.-++.-|.+ |+.. +.||+++......... -..
T Consensus 37 i~~i~~~-hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~gl~~--A~~~-------~~Pvl~I~G~~~~~~~~~~~ 106 (539)
T TIGR02418 37 IELIVVR-HEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTGLAT--ANSE-------GDPVVAIGGQVKRADLLKLT 106 (539)
T ss_pred CCEEEeC-cHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHHHHH--Hhhc-------CCCEEEEeCCCcccccccCc
Confidence 3888886 999999999999988 53333333333344445565543 3332 7999988532111111 123
Q ss_pred ccchH--HHHHccCCCcEEEeeCCHHHHHHHHHHHHhc-----CCCEEEeeccc
Q 015415 212 HSQRL--ESYFQSIPGIQMVACSTPYNAKGLMKAAIRS-----ENPVILFEHVL 258 (407)
Q Consensus 212 Hsq~~--ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~-----~~Pv~ir~~r~ 258 (407)
| |.+ .++++.+--+ .....+++++...+..|++. ++||+|-.+..
T Consensus 107 ~-q~~d~~~~~~~~tk~-~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~d 158 (539)
T TIGR02418 107 H-QSMDNVALFRPITKY-SAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQD 158 (539)
T ss_pred c-cccchhhhhhcceee-eeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChh
Confidence 5 443 3788887665 45557888888888777762 57999987754
No 103
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=93.75 E-value=1.8 Score=39.52 Aligned_cols=144 Identities=15% Similarity=0.182 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEEecchhH
Q 015415 90 FEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGF 169 (407)
Q Consensus 90 r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~~~~f 169 (407)
|+++.++|.+.+. ..+++ .|.|.... ..+.-...|.+|+..| +=...++.|.|++++--+|+++...-.-
T Consensus 1 ~~~~~~~l~~~l~--d~iiv--~d~G~~~~-----~~~~~~~~~~~~~~~g-smG~~lpaAiGa~la~~~~Vv~i~GDG~ 70 (181)
T TIGR03846 1 RIDAIRAIASYLE--DELVV--SNIGVPSK-----ELYAIRDRPLNFYMLG-SMGLASSIGLGLALATDRTVIVIDGDGS 70 (181)
T ss_pred CHHHHHHHHHhCC--CCEEE--ecCCHhHH-----HHHhhhcCCCCeeecc-ccccHHHHHHHHHHcCCCcEEEEEcchH
Confidence 4567777777773 34444 34443211 1111112278888755 2223456788888775566666544322
Q ss_pred HHHHHHHHHHhhhhhchhcCCccc-ccEEEEe-cCCCCCCCC-----cCccchHHHHHccCCCcEEEe-eCCHHHHHHHH
Q 015415 170 LLLAFNQISNNCGMLHYTSGGQFT-IPIVIRG-PGGVGRQLG-----AEHSQRLESYFQSIPGIQMVA-CSTPYNAKGLM 241 (407)
Q Consensus 170 ~~ra~dqi~~~~a~~~~~~gg~~~-lpvvi~~-~~G~~~~~G-----~tHsq~~ea~~~~iPgl~V~~-P~d~~e~~~~~ 241 (407)
++.....+. .++.. + +|++++. .++.++..+ .++.-.+..+.++. |+.-.. ..+++|+..++
T Consensus 71 f~m~~~el~-ta~~~--------~~~pv~~vV~NN~~yg~~~~q~~~~~~~~d~~~lA~a~-G~~~~~~v~~~~~l~~al 140 (181)
T TIGR03846 71 LLMNLGVLP-TIAAE--------SPKNLILVILDNGAYGSTGNQPTPASRRTDLELVAKAA-GIRNVEKVADEEELRDAL 140 (181)
T ss_pred HHhhhhHHH-HHHHh--------CCCCeEEEEEeCCccccccCcCCCCCCCCCHHHHHHHC-CCCeEEEeCCHHHHHHHH
Confidence 232333332 23322 5 4877665 443322211 11111233444443 454455 78999999999
Q ss_pred HHHHhcCCCEEEe
Q 015415 242 KAAIRSENPVILF 254 (407)
Q Consensus 242 ~~a~~~~~Pv~ir 254 (407)
+ +.+.++|.+|-
T Consensus 141 ~-a~~~~~p~li~ 152 (181)
T TIGR03846 141 K-ALAMKGPTFIH 152 (181)
T ss_pred H-HHcCCCCEEEE
Confidence 7 88888999884
No 104
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.72 E-value=1.3 Score=47.58 Aligned_cols=113 Identities=15% Similarity=0.052 Sum_probs=72.0
Q ss_pred CceEeccchhHHHHHHHHHHHhc-CCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCC-cC
Q 015415 134 LRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLG-AE 211 (407)
Q Consensus 134 ~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G-~t 211 (407)
=|++.+ -.|++++.||-|.|+. |...++.+.+...+.-++.-|.+ |+.. ++||+++.........+ ..
T Consensus 43 i~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~~i~~--A~~~-------~~Pvlvi~G~~~~~~~~~~~ 112 (574)
T PRK06882 43 IEHVLV-RHEQAAVHMADGYARSTGKVGCVLVTSGPGATNAITGIAT--AYTD-------SVPLVILSGQVPSNLIGTDA 112 (574)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHhhCCCeEEEECCCccHHHHHHHHHH--Hhhc-------CCCEEEEecCCCccccCCCc
Confidence 378888 5999999999999988 53333333333344445566643 2221 79999885322221111 12
Q ss_pred ccchH--HHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----cCCCEEEeeccc
Q 015415 212 HSQRL--ESYFQSIPGIQMVACSTPYNAKGLMKAAIR-----SENPVILFEHVL 258 (407)
Q Consensus 212 Hsq~~--ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~-----~~~Pv~ir~~r~ 258 (407)
+ |.+ ..+++.+--+ .....+++++..+++.|++ .++||+|-.+..
T Consensus 113 ~-q~~d~~~l~~~vtk~-s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06882 113 F-QECDMLGISRPVVKH-SFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKD 164 (574)
T ss_pred c-cccchhhhhhcccce-EEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecCHH
Confidence 3 433 3788776654 5566788888888888876 258999986654
No 105
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=93.71 E-value=1.1 Score=43.88 Aligned_cols=146 Identities=12% Similarity=0.060 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcC-CeeEEEecch
Q 015415 89 LFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTG-LRPIVEGMNM 167 (407)
Q Consensus 89 ~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G-~rp~~~t~~~ 167 (407)
.-.++.++|.++....++.+++ .|+|-++ + ...+.+-+ .+.... -..+.+|.|++++. -++++....-
T Consensus 18 il~al~~al~~l~~~~~~~ivv-sdiGc~~--~--~~~~~~~~----~~~~~~--G~alp~A~GaklA~Pd~~VV~i~GD 86 (279)
T PRK11866 18 ILEALRKALAELGIPPENVVVV-SGIGCSS--N--LPEFLNTY----GIHGIH--GRVLPIATGVKWANPKLTVIGYGGD 86 (279)
T ss_pred HHHHHHHHHHHhcCCCCCEEEE-ECCchhh--h--hhhhccCC----Cccccc--ccHHHHHHHHHHHCCCCcEEEEECC
Confidence 4567777776665444555444 5666322 1 11222111 122222 45677888888873 3566665554
Q ss_pred h-HHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCCCC----cC-----------cc-----chHHHHH--ccC
Q 015415 168 G-FLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQLG----AE-----------HS-----QRLESYF--QSI 223 (407)
Q Consensus 168 ~-f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~~G----~t-----------Hs-----q~~ea~~--~~i 223 (407)
. +..-.+..+.+ +++. ++|++++. .++.+|-.| ++ +. -.+..+. ...
T Consensus 87 G~~f~ig~~eL~t-A~rr--------n~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~ 157 (279)
T PRK11866 87 GDGYGIGLGHLPH-AARR--------NVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGA 157 (279)
T ss_pred hHHHHccHHHHHH-HHHH--------CcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCC
Confidence 4 45666677764 4443 78877765 333221111 00 00 0222333 344
Q ss_pred CCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 224 PGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 224 Pgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
+.+....+.+++|+..++++|++.++|.+|-
T Consensus 158 ~~Va~~~~~~~~~l~~~l~~Al~~~Gps~I~ 188 (279)
T PRK11866 158 TFVARGFSGDVKHLKEIIKEAIKHKGFSFID 188 (279)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 5555666799999999999999999999884
No 106
>PRK08611 pyruvate oxidase; Provisional
Probab=93.69 E-value=1.5 Score=47.19 Aligned_cols=155 Identities=15% Similarity=0.070 Sum_probs=87.2
Q ss_pred chHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEEec
Q 015415 87 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGM 165 (407)
Q Consensus 87 ~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~ 165 (407)
++..+++.+.|.+..- +.++.+-.+- ...+.+.+.+.-..=|++.+ ..|++++.||.|.|+. |...++.+.
T Consensus 4 ~~~~~~l~~~L~~~GV--~~vFgipG~~-----~~~l~dal~~~~~~i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t 75 (576)
T PRK08611 4 IKAGEALVKLLQDWGI--DHVYGIPGDS-----IDAVVDALRKEQDKIKFIQV-RHEEVAALAAAAYAKLTGKIGVCLSI 75 (576)
T ss_pred CcHHHHHHHHHHHcCC--CEEEecCCcc-----hHHHHHHHHhcCCCCeEEEe-CcHHHHHHHHHHHHHHhCCceEEEEC
Confidence 3445555555543321 3444443331 12334555432112488886 5999999999999988 533333332
Q ss_pred chhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCC--CCCCcCccchHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 015415 166 NMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVG--RQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKA 243 (407)
Q Consensus 166 ~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~--~~~G~tHsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~ 243 (407)
+...+.-++.-|.+ |+.. ++||+++...-.. -+.+..|......+++.+--+ .....+++++...+..
T Consensus 76 ~GPG~~N~l~gla~--A~~~-------~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l~~~itk~-~~~v~~~~~~~~~l~~ 145 (576)
T PRK08611 76 GGPGAIHLLNGLYD--AKMD-------HVPVLALAGQVTSDLLGTDFFQEVNLEKMFEDVAVY-NHQIMSAENLPEIVNQ 145 (576)
T ss_pred CCCcHHHHHHHHHH--Hhhc-------CCCEEEEecCCcccccCCCCccccCHHHHhhcccce-eEEeCCHHHHHHHHHH
Confidence 33344445565543 3332 7999988632111 122222211223788877655 4566788888887777
Q ss_pred HHh----cCCCEEEeecccc
Q 015415 244 AIR----SENPVILFEHVLL 259 (407)
Q Consensus 244 a~~----~~~Pv~ir~~r~~ 259 (407)
|++ .++||+|-.+...
T Consensus 146 A~~~A~~~~GPV~l~iP~Dv 165 (576)
T PRK08611 146 AIRTAYEKKGVAVLTIPDDL 165 (576)
T ss_pred HHHHHhhCCCCEEEEeChhh
Confidence 765 3689999877643
No 107
>PRK06163 hypothetical protein; Provisional
Probab=93.68 E-value=2.6 Score=39.32 Aligned_cols=146 Identities=12% Similarity=0.104 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcC-CeeEEEecchh
Q 015415 90 FEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTG-LRPIVEGMNMG 168 (407)
Q Consensus 90 r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G-~rp~~~t~~~~ 168 (407)
|..+-..|.+.+.+| ++++ .|.|... +. .+.-.+.|.+|+.+| +=-..+.+|.|++++. -+++++...-.
T Consensus 15 ~~~~i~~l~~~l~~~-~~iv--~D~G~~~--~~---~~~~~~~~~~~~~~G-sMG~glpaAiGaalA~p~r~Vv~i~GDG 85 (202)
T PRK06163 15 RFDLTCRLVAKLKDE-EAVI--GGIGNTN--FD---LWAAGQRPQNFYMLG-SMGLAFPIALGVALAQPKRRVIALEGDG 85 (202)
T ss_pred HHHHHHHHHHhcCCC-CEEE--ECCCccH--HH---HHHhhcCCCCeEeec-ccccHHHHHHHHHHhCCCCeEEEEEcch
Confidence 555556666666543 4444 3555310 11 111112277888655 3334455788888774 45666655533
Q ss_pred -HHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCC---C--CcCccchHHHHHccCCCcE-EEeeCCHHHHHHH
Q 015415 169 -FLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQ---L--GAEHSQRLESYFQSIPGIQ-MVACSTPYNAKGL 240 (407)
Q Consensus 169 -f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~---~--G~tHsq~~ea~~~~iPgl~-V~~P~d~~e~~~~ 240 (407)
|++-.-| |.. ++.. .++|++++. .++..+- . ...+.-.+..+.+.+ |+. -+...+.+|+..+
T Consensus 86 ~f~m~~~e-L~T-a~~~-------~~lpi~ivV~NN~~yg~~~~~~~~~~~~~Df~~lA~a~-G~~~~~~v~~~~el~~a 155 (202)
T PRK06163 86 SLLMQLGA-LGT-IAAL-------APKNLTIIVMDNGVYQITGGQPTLTSQTVDVVAIARGA-GLENSHWAADEAHFEAL 155 (202)
T ss_pred HHHHHHHH-HHH-HHHh-------cCCCeEEEEEcCCchhhcCCccCCCCCCCCHHHHHHHC-CCceEEEeCCHHHHHHH
Confidence 4433333 322 2211 146766665 3332221 1 111211333455554 564 5678899999999
Q ss_pred HHHHHhcCCCEEEe
Q 015415 241 MKAAIRSENPVILF 254 (407)
Q Consensus 241 ~~~a~~~~~Pv~ir 254 (407)
++++++.++|++|-
T Consensus 156 l~~a~~~~~p~lIe 169 (202)
T PRK06163 156 VDQALSGPGPSFIA 169 (202)
T ss_pred HHHHHhCCCCEEEE
Confidence 99999989999874
No 108
>PRK08266 hypothetical protein; Provisional
Probab=93.61 E-value=1.3 Score=47.14 Aligned_cols=152 Identities=19% Similarity=0.093 Sum_probs=88.1
Q ss_pred chHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCee-EE-Ee
Q 015415 87 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRP-IV-EG 164 (407)
Q Consensus 87 ~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp-~~-~t 164 (407)
++..+++.+.|.++ .=+.++...... ...+.+.+.+.-+.=|++.+- .|++++.||-|.|+..-+| ++ .|
T Consensus 4 ~~~~~~l~~~L~~~---Gv~~vFg~pG~~----~~~l~~al~~~~~~i~~v~~~-hE~~A~~~A~gyar~tg~~~v~~~t 75 (542)
T PRK08266 4 MTGGEAIVAGLVAH---GVDTVFGLPGAQ----LYWLFDALYKAGDRIRVIHTR-HEQAAGYMAFGYARSTGRPGVCSVV 75 (542)
T ss_pred CcHHHHHHHHHHHc---CCCEEEECCCcc----hHHHHHHHHhcCCCCeEEeec-cHHHHHHHHHHHHHHhCCCeEEEEC
Confidence 34455555555443 334444332211 123345554321124888884 9999999999999884444 33 33
Q ss_pred cchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCC---CCC-CcCccchH--HHHHccCCCcEEEeeCCHHHHH
Q 015415 165 MNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVG---RQL-GAEHSQRL--ESYFQSIPGIQMVACSTPYNAK 238 (407)
Q Consensus 165 ~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~---~~~-G~tHsq~~--ea~~~~iPgl~V~~P~d~~e~~ 238 (407)
..+. +.-++.-|.+ + +.. ++||+++...-.. +.. +..| +.. ..+++.+-.+ .....+++++.
T Consensus 76 ~GpG-~~N~~~gi~~-A-~~~-------~~Pvl~i~g~~~~~~~~~~~~~~~-~~~d~~~~~~~~tk~-~~~v~~~~~~~ 143 (542)
T PRK08266 76 PGPG-VLNAGAALLT-A-YGC-------NSPVLCLTGQIPSALIGKGRGHLH-EMPDQLATLRSFTKW-AERIEHPSEAP 143 (542)
T ss_pred CCCc-HHHHHHHHHH-H-Hhh-------CCCEEEEecCCChhhccCCCCcce-ecccHhhHHhhhcce-EEEeCCHHHHH
Confidence 3444 4445565542 3 332 7999988532111 111 2234 433 3788887665 56677788888
Q ss_pred HHHHHHHh-----cCCCEEEeeccc
Q 015415 239 GLMKAAIR-----SENPVILFEHVL 258 (407)
Q Consensus 239 ~~~~~a~~-----~~~Pv~ir~~r~ 258 (407)
..++.|++ .++||+|-.+..
T Consensus 144 ~~l~~A~~~a~~~~~GPV~l~iP~d 168 (542)
T PRK08266 144 ALVAEAFQQMLSGRPRPVALEMPWD 168 (542)
T ss_pred HHHHHHHHHHhhCCCCcEEEEeCHh
Confidence 88887776 258999987754
No 109
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=93.45 E-value=1.7 Score=46.94 Aligned_cols=125 Identities=10% Similarity=0.049 Sum_probs=74.2
Q ss_pred cchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec
Q 015415 123 VTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP 201 (407)
Q Consensus 123 ~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~ 201 (407)
+.+.+.+.-..=|||.+- .|+++..||-|.|+. |...++.+.+...+.-+..-|.+ |+.. ++||+++..
T Consensus 28 l~dal~~~~~~i~~v~~r-hE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~~i~~--A~~~-------~~Pvl~I~G 97 (575)
T TIGR02720 28 TMDALSAERDRIHYIQVR-HEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLNGLYD--AKED-------HVPVLALVG 97 (575)
T ss_pred HHHHHHhcCCCCcEEEec-cHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHHHHHH--Hhhc-------CCCEEEEec
Confidence 345554321024788885 999999999999987 44344333334444555565543 3332 799998863
Q ss_pred CCCCCCCC-cCccchHH--HHHccCCCcEEEeeCCHHHHHHHHHHHHh----cCCCEEEeecccc
Q 015415 202 GGVGRQLG-AEHSQRLE--SYFQSIPGIQMVACSTPYNAKGLMKAAIR----SENPVILFEHVLL 259 (407)
Q Consensus 202 ~G~~~~~G-~tHsq~~e--a~~~~iPgl~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~~r~~ 259 (407)
.......+ .++ |.++ ++++.+--+ .....+++++...++.|++ .++||||-.+...
T Consensus 98 ~~~~~~~~~~~~-q~id~~~~~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv 160 (575)
T TIGR02720 98 QVPTTGMNMDTF-QEMNENPIYADVAVY-NRTAMTAESLPHVIDEAIRRAYAHNGVAVVTIPVDF 160 (575)
T ss_pred CCccccCCCCCc-ceechhhhhhhcceE-EEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEECcch
Confidence 22221112 234 4332 777766543 3455667777666666654 4789999877643
No 110
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=93.19 E-value=1.9 Score=46.48 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=72.2
Q ss_pred CceEeccchhHHHHHHHHHHHhc-CCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCC-cC
Q 015415 134 LRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLG-AE 211 (407)
Q Consensus 134 ~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G-~t 211 (407)
=|+|.+- .|++++.||-|.|+. |.-.++.+.+...+.-++.-|.+ |+.. ++||+++...-.....| ..
T Consensus 40 i~~i~~r-hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~~~gla~--A~~~-------~~Pvl~I~g~~~~~~~~~~~ 109 (579)
T TIGR03457 40 IRFIPVV-HEQGAGHMADGFARVTGRMSMVIGQNGPGVTNCVTAIAA--AYWA-------HTPVVIVTPEAGTKTIGLGG 109 (579)
T ss_pred CeEEEec-cHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHH--Hhhc-------CCCEEEEeCCCccccCCCCC
Confidence 3888885 999999999999987 64444433333344445555543 2322 79999885321111111 23
Q ss_pred ccchHH--HHHccCCCcEEEeeCCHHHHHHHHHHHHh----cCCCEEEeecccc
Q 015415 212 HSQRLE--SYFQSIPGIQMVACSTPYNAKGLMKAAIR----SENPVILFEHVLL 259 (407)
Q Consensus 212 Hsq~~e--a~~~~iPgl~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~~r~~ 259 (407)
| |.++ .+++.+--+ .....+++++...++.|++ .++||+|-.++..
T Consensus 110 ~-Q~~d~~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv 161 (579)
T TIGR03457 110 F-QEADQLPMFQEFTKY-QGHVRHPSRMAEVLNRCFERAWREMGPAQLNIPRDY 161 (579)
T ss_pred C-cccchhhhhhcceeE-EEecCCHHHHHHHHHHHHHHHhcCCCCEEEEeCcch
Confidence 4 4333 788877654 5556788888887777765 3689999877643
No 111
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=93.17 E-value=2.9 Score=38.57 Aligned_cols=26 Identities=15% Similarity=0.049 Sum_probs=23.5
Q ss_pred EeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 229 VACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 229 ~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
..+.++.|+...+++|++.++|++|-
T Consensus 155 ~~v~~~~el~~al~~al~~~gp~vIe 180 (193)
T cd03375 155 GFSGDIKQLKEIIKKAIQHKGFSFVE 180 (193)
T ss_pred EecCCHHHHHHHHHHHHhcCCCEEEE
Confidence 46899999999999999999999984
No 112
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=93.11 E-value=1 Score=41.52 Aligned_cols=111 Identities=13% Similarity=0.106 Sum_probs=65.3
Q ss_pred CCceEeccc-hh-HHHHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCC
Q 015415 133 DLRVLDTPI-AE-NSFTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQ 207 (407)
Q Consensus 133 p~R~i~~GI-aE-~~~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~ 207 (407)
|.+|+..+- .= -..+..|+|++++. -|++++...- .|++- ...|-. +... ++|++++. .++..+.
T Consensus 43 ~~~~~~~~~~g~mG~~lpaaiGa~la~p~r~vv~i~GDG~f~m~-~~eL~T-a~~~--------~lpvi~vV~NN~~yg~ 112 (196)
T cd02013 43 PRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVAIAGDGAWGMS-MMEIMT-AVRH--------KLPVTAVVFRNRQWGA 112 (196)
T ss_pred CCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhcc-HHHHHH-HHHh--------CCCeEEEEEECchhHH
Confidence 788886531 11 23566888888763 4666665443 34443 333433 3332 78988776 3332211
Q ss_pred --------CCc-----C-ccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh---cCCCEEEe
Q 015415 208 --------LGA-----E-HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIR---SENPVILF 254 (407)
Q Consensus 208 --------~G~-----t-Hsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~---~~~Pv~ir 254 (407)
.+. . +.-.+..+.+++ |+.-+...++.|+..++++++. .++|++|-
T Consensus 113 ~~~~q~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~p~lie 175 (196)
T cd02013 113 EKKNQVDFYNNRFVGTELESESFAKIAEAC-GAKGITVDKPEDVGPALQKAIAMMAEGKTTVIE 175 (196)
T ss_pred HHHHHHHHcCCCcccccCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 110 1 111223444444 6667788999999999999998 78999884
No 113
>PLN02573 pyruvate decarboxylase
Probab=93.10 E-value=1.6 Score=47.07 Aligned_cols=153 Identities=18% Similarity=0.080 Sum_probs=84.3
Q ss_pred chHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEEec
Q 015415 87 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGM 165 (407)
Q Consensus 87 ~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~ 165 (407)
++..+++.+.|.+.. =+.|+.+-.+- ...+.+.+.+.- .=+||.+ -.|+++..||-|.|+. | ..++.+.
T Consensus 16 ~~~a~~l~~~L~~~G--v~~vFGvpG~~-----~~~l~dal~~~~-~i~~i~~-rhE~~A~~mAdgyaR~tg-~gv~~~t 85 (578)
T PLN02573 16 ATLGRHLARRLVEIG--VTDVFSVPGDF-----NLTLLDHLIAEP-GLNLIGC-CNELNAGYAADGYARARG-VGACVVT 85 (578)
T ss_pred ccHHHHHHHHHHHcC--CCEEEECCCCc-----hHHHHHHHhhcC-CceEEEe-CCHHHHHHHHHHHHHHhC-CCeEEEe
Confidence 344555555554321 14444443331 123344553221 2377777 4999999999999988 7 6655544
Q ss_pred chhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCC---CCCCcCccc----h-H--HHHHccCCCcEEEeeCCHH
Q 015415 166 NMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVG---RQLGAEHSQ----R-L--ESYFQSIPGIQMVACSTPY 235 (407)
Q Consensus 166 ~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~---~~~G~tHsq----~-~--ea~~~~iPgl~V~~P~d~~ 235 (407)
+.....-+..-|.+ ++.. +.||+++...-.. +..+..|+. . + ..+++.+--+ .....+++
T Consensus 86 ~GpG~~n~~~gla~--A~~d-------~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itk~-s~~v~~~~ 155 (578)
T PLN02573 86 FTVGGLSVLNAIAG--AYSE-------NLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCY-QAVINNLE 155 (578)
T ss_pred cCccHHHHHHHHHH--HHHh-------CCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHHhhceEEE-EEEeCCHH
Confidence 43444445565543 3332 7999988532111 222223421 1 1 1566665543 44456677
Q ss_pred HHHHHHHHHHh----cCCCEEEeecccc
Q 015415 236 NAKGLMKAAIR----SENPVILFEHVLL 259 (407)
Q Consensus 236 e~~~~~~~a~~----~~~Pv~ir~~r~~ 259 (407)
++...++.|++ .++||||-.+...
T Consensus 156 ~~~~~l~~A~~~A~~~~gPV~l~iP~Dv 183 (578)
T PLN02573 156 DAHELIDTAISTALKESKPVYISVSCNL 183 (578)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeehhh
Confidence 76666666654 4789999877653
No 114
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=93.08 E-value=1.4 Score=47.47 Aligned_cols=123 Identities=12% Similarity=0.024 Sum_probs=73.1
Q ss_pred cchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEEec-chhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec
Q 015415 123 VTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGM-NMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP 201 (407)
Q Consensus 123 ~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~-~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~ 201 (407)
+.+.+.+.- .=|++.+- .|+++..||-|.|+..-+|-+++. +.....-+..-|.+ |+.. ++||+++..
T Consensus 32 l~dal~~~~-~i~~i~~r-hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gi~~--A~~~-------~~Pvl~i~G 100 (574)
T PRK09124 32 LSDSLRRMG-TIEWMHTR-HEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLINGLFD--CHRN-------HVPVLAIAA 100 (574)
T ss_pred HHHHHhccC-CCcEEEeC-cHHHHHHHHHHHHHhhCCcEEEEECCCCCHHHHHHHHHH--Hhhc-------CCCEEEEec
Confidence 345554321 23788874 999999999999999545555532 22333445555542 2332 799998853
Q ss_pred CCCCCCCC-cCccchH--HHHHccCCCcEEEeeCCHHHHHHHHHHHHh----cCCCEEEeeccc
Q 015415 202 GGVGRQLG-AEHSQRL--ESYFQSIPGIQMVACSTPYNAKGLMKAAIR----SENPVILFEHVL 258 (407)
Q Consensus 202 ~G~~~~~G-~tHsq~~--ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~~r~ 258 (407)
.......| ..| |.. ..+++.+--+ .....+++++...++.|++ .++||+|-.+..
T Consensus 101 ~~~~~~~~~~~~-Q~~d~~~l~~~itk~-~~~v~~~~~~~~~i~~A~~~A~~~~gPV~l~iP~D 162 (574)
T PRK09124 101 HIPSSEIGSGYF-QETHPQELFRECSHY-CELVSNPEQLPRVLAIAMRKAILNRGVAVVVLPGD 162 (574)
T ss_pred CCccccCCCCCc-cccChhhhcccceee-eEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChh
Confidence 22221111 124 433 3788866544 3446677777766666655 468999987654
No 115
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=92.93 E-value=1.1 Score=39.37 Aligned_cols=110 Identities=21% Similarity=0.293 Sum_probs=65.6
Q ss_pred CCceEec--cchhHHHHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCC-
Q 015415 133 DLRVLDT--PIAENSFTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGR- 206 (407)
Q Consensus 133 p~R~i~~--GIaE~~~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~- 206 (407)
|.+|++. .-+=-..+++|.|++++. -++++....- .|++- ...|.. +... ++|++++. .++..+
T Consensus 18 p~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i~GDG~f~~~-~~el~t-a~~~--------~~~v~~vv~nN~~~~~ 87 (153)
T PF02775_consen 18 PRRFLTSGGFGSMGYALPAAIGAALARPDRPVVAITGDGSFLMS-LQELAT-AVRY--------GLPVVIVVLNNGGYGM 87 (153)
T ss_dssp TTEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHH-GGGHHH-HHHT--------TSSEEEEEEESSBSHH
T ss_pred CCeEEcCCCccccCCHHHhhhHHHhhcCcceeEEecCCcceeec-cchhHH-Hhhc--------cceEEEEEEeCCcceE
Confidence 7889883 224456778888888873 3555554443 33332 343432 3332 67877765 332111
Q ss_pred ------CCCc----------CccchHHHHHccCCCcEEEeeCCH--HHHHHHHHHHHhcCCCEEE
Q 015415 207 ------QLGA----------EHSQRLESYFQSIPGIQMVACSTP--YNAKGLMKAAIRSENPVIL 253 (407)
Q Consensus 207 ------~~G~----------tHsq~~ea~~~~iPgl~V~~P~d~--~e~~~~~~~a~~~~~Pv~i 253 (407)
..+. .|.-.++.+.+.+ |+..+.-.++ +|+...++++++.++|++|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~~el~~al~~a~~~~gp~vI 151 (153)
T PF02775_consen 88 TGGQQTPFGGGRFSGVDGKTFPNPDFAALAEAF-GIKGARVTTPDPEELEEALREALESGGPAVI 151 (153)
T ss_dssp HHHHHHHTTSTCHHSTBTTTSTTCGHHHHHHHT-TSEEEEESCHSHHHHHHHHHHHHHSSSEEEE
T ss_pred eccccccCcCcccccccccccccCCHHHHHHHc-CCcEEEEccCCHHHHHHHHHHHHhCCCcEEE
Confidence 0111 1222344555555 6667676666 9999999999999999987
No 116
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=92.92 E-value=2.1 Score=46.31 Aligned_cols=114 Identities=12% Similarity=0.065 Sum_probs=71.5
Q ss_pred CceEeccchhHHHHHHHHHHHhcC-CeeEEE-ecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCC-c
Q 015415 134 LRVLDTPIAENSFTGMGIGAAMTG-LRPIVE-GMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLG-A 210 (407)
Q Consensus 134 ~R~i~~GIaE~~~vg~A~GlA~~G-~rp~~~-t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G-~ 210 (407)
=|+|.+- .|++++.||-|.|+.. -+|-++ +.+.....-++.-|.+ |+.. ++||+++.-.-.....+ .
T Consensus 42 i~~V~~r-hE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N~~~gla~--A~~~-------~~Pvl~I~G~~~~~~~~~~ 111 (588)
T TIGR01504 42 IRHILAR-HVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGLYS--ASAD-------SIPILCITGQAPRARLHKE 111 (588)
T ss_pred CcEEeeC-CHHHHHHHHHHHHHhcCCCeEEEEECCCccHHHHHHHHHH--Hhhc-------CCCEEEEecCCCccccCCC
Confidence 3788874 8999999999999874 444443 2232333445555543 2332 79999885221111111 1
Q ss_pred CccchHH--HHHccCCCcEEEeeCCHHHHHHHHHHHHhc-----CCCEEEeecccc
Q 015415 211 EHSQRLE--SYFQSIPGIQMVACSTPYNAKGLMKAAIRS-----ENPVILFEHVLL 259 (407)
Q Consensus 211 tHsq~~e--a~~~~iPgl~V~~P~d~~e~~~~~~~a~~~-----~~Pv~ir~~r~~ 259 (407)
.+ |.++ ++++.+--+ .....+++++..+++.|++. ++||+|-.+...
T Consensus 112 ~~-q~~D~~~~~~~vtk~-~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv 165 (588)
T TIGR01504 112 DF-QAVDIAAIAKPVSKM-AVTVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDV 165 (588)
T ss_pred cc-cccCHHHHhhhhceE-EEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEeCcch
Confidence 23 4433 788877654 44556889999999888872 479999877653
No 117
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=92.77 E-value=2 Score=46.39 Aligned_cols=122 Identities=11% Similarity=0.010 Sum_probs=75.6
Q ss_pred cchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEEe-cchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec
Q 015415 123 VTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEG-MNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP 201 (407)
Q Consensus 123 ~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t-~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~ 201 (407)
+.+.+.+.- .=|||.+- .|++++.||-|.|+..-+|-+++ .....+.-++.-|.+ |+.. +.||+++..
T Consensus 32 l~dal~~~~-~i~~i~~r-hE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N~~~gl~~--A~~~-------~~Pvl~I~G 100 (578)
T PRK06546 32 IVDAVRRTG-GIEWVHVR-HEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLHLINGLYD--AHRS-------GAPVLAIAS 100 (578)
T ss_pred HHHHHhccC-CCeEEEeC-cHHHHHHHHHhHHHhhCCceEEEECCCCcHHHHHHHHHH--HHhc-------CCCEEEEeC
Confidence 345554332 23688885 99999999999999954554443 222334445555542 3332 799998853
Q ss_pred CCCCC--CCCcCccchH--HHHHccCCCcEEEeeCCHHHHHHHHHHHHh----cCCCEEEeeccc
Q 015415 202 GGVGR--QLGAEHSQRL--ESYFQSIPGIQMVACSTPYNAKGLMKAAIR----SENPVILFEHVL 258 (407)
Q Consensus 202 ~G~~~--~~G~tHsq~~--ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~~r~ 258 (407)
..... +.|. + |.. ..+++.+--+ .+...+++++...++.|++ .++||+|-.+..
T Consensus 101 ~~~~~~~~~~~-~-Qe~d~~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~lP~D 162 (578)
T PRK06546 101 HIPSAQIGSGF-F-QETHPDRLFVECSGY-CEMVSSAEQAPRVLHSAIQHAVAGGGVSVVTLPGD 162 (578)
T ss_pred CCCccccCCCC-c-cccChhhhcccceee-EeEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 22221 1222 3 333 3677766544 5677788888888877776 378999987754
No 118
>PRK08617 acetolactate synthase; Reviewed
Probab=92.75 E-value=2.1 Score=45.85 Aligned_cols=149 Identities=14% Similarity=0.079 Sum_probs=87.4
Q ss_pred chHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCe-eEEE-e
Q 015415 87 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLR-PIVE-G 164 (407)
Q Consensus 87 ~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~r-p~~~-t 164 (407)
++..+++.+.|.++ +-+.|+.-.... ...+.+.+.+. .=|+|.+- .|+++..||.|.|+..-+ .++. |
T Consensus 5 ~~~~~~l~~~L~~~---GV~~vFg~pG~~----~~~l~~al~~~--~i~~i~~~-hE~~A~~~A~gyar~tg~~gv~~vt 74 (552)
T PRK08617 5 KYGADLVVDSLINQ---GVKYVFGIPGAK----IDRVFDALEDS--GPELIVTR-HEQNAAFMAAAIGRLTGKPGVVLVT 74 (552)
T ss_pred ccHHHHHHHHHHHc---CCCEEEeCCCcc----HHHHHHHHhhC--CCCEEEec-cHHHHHHHHHhHhhhcCCCEEEEEC
Confidence 34455555555433 334444332211 12334555432 25888885 999999999999999443 3333 3
Q ss_pred cchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecC-CCC-CCCCcCccchHH--HHHccCCCcEEEeeCCHHHHHHH
Q 015415 165 MNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPG-GVG-RQLGAEHSQRLE--SYFQSIPGIQMVACSTPYNAKGL 240 (407)
Q Consensus 165 ~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~-G~~-~~~G~tHsq~~e--a~~~~iPgl~V~~P~d~~e~~~~ 240 (407)
..+.+ .-++.-+.+ |+.. +.||+++... ... ...+ .| |.++ .+++.+--+ .+...+++++...
T Consensus 75 ~GpG~-~N~l~gl~~--A~~~-------~~PvlvisG~~~~~~~~~~-~~-q~~d~~~l~~~~tk~-~~~v~~~~~~~~~ 141 (552)
T PRK08617 75 SGPGV-SNLATGLVT--ATAE-------GDPVVAIGGQVKRADRLKR-TH-QSMDNVALFRPITKY-SAEVQDPDNLSEV 141 (552)
T ss_pred CCCcH-hHhHHHHHH--Hhhc-------CCCEEEEecCCcccccCCC-Cc-cccchhhhhhhhcce-EEEeCCHHHHHHH
Confidence 34444 435555542 3332 7999988521 111 1122 34 4443 788887655 5666788888888
Q ss_pred HHHHHhc-----CCCEEEeeccc
Q 015415 241 MKAAIRS-----ENPVILFEHVL 258 (407)
Q Consensus 241 ~~~a~~~-----~~Pv~ir~~r~ 258 (407)
+..|++. ++||+|-.+..
T Consensus 142 i~~A~~~a~~~~~GPV~l~iP~d 164 (552)
T PRK08617 142 LANAFRAAESGRPGAAFVSLPQD 164 (552)
T ss_pred HHHHHHHHccCCCCcEEEeChhh
Confidence 8888772 57999986654
No 119
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=92.72 E-value=0.66 Score=40.93 Aligned_cols=112 Identities=15% Similarity=0.192 Sum_probs=63.6
Q ss_pred CCceEeccch--hHHHHHHHHHHHhcC-CeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCCC
Q 015415 133 DLRVLDTPIA--ENSFTGMGIGAAMTG-LRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQL 208 (407)
Q Consensus 133 p~R~i~~GIa--E~~~vg~A~GlA~~G-~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~~ 208 (407)
|.+++..+.. =-..++.|.|++++. -+++++...-.-++..++.+.. +... ++|++++. .++..+..
T Consensus 36 ~~~~~~~~~~g~~G~~~~~a~Gaa~a~~~~~vv~~~GDG~~~~~~~~l~t-a~~~--------~~~~~~iv~nN~~~~~~ 106 (168)
T cd00568 36 GRRFLTSTGFGAMGYGLPAAIGAALAAPDRPVVCIAGDGGFMMTGQELAT-AVRY--------GLPVIVVVFNNGGYGTI 106 (168)
T ss_pred CCcEEeCCCchhhhhhHHHHHHHHHhCCCCcEEEEEcCcHHhccHHHHHH-HHHc--------CCCcEEEEEECCccHHH
Confidence 4555543221 123455677777775 2444544443223335555533 3332 78877776 34322111
Q ss_pred C-------------c-CccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 209 G-------------A-EHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 209 G-------------~-tHsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
+ . .+...+..+.... |+......+++|+..+++++.+.++|++|.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~d~~~~a~~~-G~~~~~v~~~~~l~~a~~~a~~~~~p~~i~ 165 (168)
T cd00568 107 RMHQEAFYGGRVSGTDLSNPDFAALAEAY-GAKGVRVEDPEDLEAALAEALAAGGPALIE 165 (168)
T ss_pred HHHHHHHcCCCcccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 1 0 1112333555554 777888889999999999999889999874
No 120
>PRK11269 glyoxylate carboligase; Provisional
Probab=92.62 E-value=2.4 Score=45.89 Aligned_cols=122 Identities=12% Similarity=0.049 Sum_probs=75.7
Q ss_pred cchhhhhhhCCCceEeccchhHHHHHHHHHHHhcC-CeeEE--EecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEE
Q 015415 123 VTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTG-LRPIV--EGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIR 199 (407)
Q Consensus 123 ~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G-~rp~~--~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~ 199 (407)
+.+.+.+.- .=|++.+ ..|++++.||-|.|+.. -+|-+ .|..+..+. ++.-+.+ |+.. ++||+++
T Consensus 33 l~dal~~~~-~i~~v~~-rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~N-~l~gl~~--A~~~-------~~Pvl~I 100 (591)
T PRK11269 33 FYSAMRKHG-GIRHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD-MITGLYS--ASAD-------SIPILCI 100 (591)
T ss_pred HHHHHhhcC-CCcEEee-CCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHHH-HHHHHHH--Hhhc-------CCCEEEE
Confidence 445664321 2489998 59999999999999886 44443 344444433 4454532 3332 7999988
Q ss_pred ecCCCCCCCC-cCccchHH--HHHccCCCcEEEeeCCHHHHHHHHHHHHhc-----CCCEEEeeccc
Q 015415 200 GPGGVGRQLG-AEHSQRLE--SYFQSIPGIQMVACSTPYNAKGLMKAAIRS-----ENPVILFEHVL 258 (407)
Q Consensus 200 ~~~G~~~~~G-~tHsq~~e--a~~~~iPgl~V~~P~d~~e~~~~~~~a~~~-----~~Pv~ir~~r~ 258 (407)
...-.....+ ..+ |.++ ++++.+--+ .....+++++..+++.|++. ++||+|-.+..
T Consensus 101 ~G~~~~~~~~~~~~-q~~d~~~l~~~itk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 165 (591)
T PRK11269 101 TGQAPRARLHKEDF-QAVDIESIAKPVTKW-AVTVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFD 165 (591)
T ss_pred ecCCCccccCCCcc-cccChhhHhhcceeE-EEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEEeChh
Confidence 5321111111 123 4433 788876655 44567888888888888762 58999987754
No 121
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=92.61 E-value=1.9 Score=46.66 Aligned_cols=149 Identities=14% Similarity=0.116 Sum_probs=84.8
Q ss_pred HHHHHHHhhh-C-CCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEEecchhHH
Q 015415 94 REGLEEEMDR-D-PHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGMNMGFL 170 (407)
Q Consensus 94 ~~~L~~l~~~-d-~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~~~~f~ 170 (407)
++.|.+.+++ + +.|+.+-.+-. ..+.+.+.+.-..=+||.+- .|++++.||-|.|+. |...++.+.+...+
T Consensus 6 a~~l~~~L~~~GV~~vFGvpG~~~-----~~l~dal~~~~~~i~~i~~r-hE~~A~~~Adgyar~tg~~gv~~~t~GPG~ 79 (597)
T PRK08273 6 ADFILERLREWGVRRVFGYPGDGI-----NGLLGALGRADDKPEFVQAR-HEEMAAFMAVAHAKFTGEVGVCLATSGPGA 79 (597)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCch-----HHHHHHHHhccCCCeEEEec-cHHHHHHHHHHHHHHhCCCEEEEECCCccH
Confidence 3444444443 3 44555544321 23445554321124788885 999999999999988 54444443344445
Q ss_pred HHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCC-cCccchH--HHHHccCC-CcEEEeeCCHHHHHHHHHHHHh
Q 015415 171 LLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLG-AEHSQRL--ESYFQSIP-GIQMVACSTPYNAKGLMKAAIR 246 (407)
Q Consensus 171 ~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G-~tHsq~~--ea~~~~iP-gl~V~~P~d~~e~~~~~~~a~~ 246 (407)
.-++.-|.+ |+.. ++||+++...-.....| ..+ |.+ .++++.+- -+ .....+++++...++.|++
T Consensus 80 ~n~~~gi~~--A~~d-------~vPvl~I~G~~~~~~~~~~~~-q~~d~~~l~~~vt~k~-~~~v~~~~~~~~~l~~A~~ 148 (597)
T PRK08273 80 IHLLNGLYD--AKLD-------HVPVVAIVGQQARAALGGHYQ-QEVDLQSLFKDVAGAF-VQMVTVPEQLRHLVDRAVR 148 (597)
T ss_pred HHHHHHHHH--HHhc-------CCCEEEEecCCchhhcCCCCC-CccCHHHHHHHHHHHH-eeEeCCHHHHHHHHHHHHH
Confidence 556666642 3332 89999885221111111 123 333 26777654 33 4566777777777777665
Q ss_pred ----cCCCEEEeecccc
Q 015415 247 ----SENPVILFEHVLL 259 (407)
Q Consensus 247 ----~~~Pv~ir~~r~~ 259 (407)
.++||+|-.+...
T Consensus 149 ~A~~~~gPV~i~iP~Dv 165 (597)
T PRK08273 149 TALAERTVTAVILPNDV 165 (597)
T ss_pred HHhhCCCCEEEEeCcch
Confidence 4689999877543
No 122
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=92.57 E-value=2.2 Score=45.65 Aligned_cols=113 Identities=13% Similarity=0.076 Sum_probs=71.6
Q ss_pred CceEeccchhHHHHHHHHHHHhc-CCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCC-cC
Q 015415 134 LRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLG-AE 211 (407)
Q Consensus 134 ~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G-~t 211 (407)
=|++.+ ..|++++.||.|.|+. |...++.+.+...+.-++.-+.+ |+.. ++||+++...-.....| ..
T Consensus 39 i~~v~~-~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~~~l~~--A~~~-------~~Pvl~i~g~~~~~~~~~~~ 108 (548)
T PRK08978 39 VEHLLC-RHEQGAAMAAIGYARATGKVGVCIATSGPGATNLITGLAD--ALLD-------SVPVVAITGQVSSPLIGTDA 108 (548)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHHH--Hhhc-------CCCEEEEecCCCccccCCCC
Confidence 478888 5999999999999999 54444333333444445565543 2322 79999886321111111 12
Q ss_pred ccchHH--HHHccCCCcEEEeeCCHHHHHHHHHHHHhc-----CCCEEEeeccc
Q 015415 212 HSQRLE--SYFQSIPGIQMVACSTPYNAKGLMKAAIRS-----ENPVILFEHVL 258 (407)
Q Consensus 212 Hsq~~e--a~~~~iPgl~V~~P~d~~e~~~~~~~a~~~-----~~Pv~ir~~r~ 258 (407)
+ |.++ ++++.+--+. +...+++++..+++.|++. ++||+|-.+..
T Consensus 109 ~-q~~d~~~~~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (548)
T PRK08978 109 F-QEIDVLGLSLACTKHS-FLVQSLEELPEIMAEAFEIASSGRPGPVLVDIPKD 160 (548)
T ss_pred C-cccchhccccCceeeE-EEECCHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence 3 4333 6788776653 4445888888888888762 58999987654
No 123
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=92.56 E-value=2.4 Score=45.59 Aligned_cols=113 Identities=16% Similarity=0.050 Sum_probs=71.8
Q ss_pred ceEeccchhHHHHHHHHHHHhcCCe-eEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCC----
Q 015415 135 RVLDTPIAENSFTGMGIGAAMTGLR-PIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLG---- 209 (407)
Q Consensus 135 R~i~~GIaE~~~vg~A~GlA~~G~r-p~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G---- 209 (407)
|||.+- .|++++.||-|.|+..-+ .++.+.+...+.-+..-|.+ |+.. ++||+++...-.....+
T Consensus 52 ~~V~~r-hE~~A~~~Adgyar~tgk~gv~~~t~GPG~~N~~~gla~--A~~d-------~~Pvl~I~G~~~~~~~~~~~~ 121 (569)
T PRK08327 52 EFVICP-HEIVAISMAHGYALVTGKPQAVMVHVDVGTANALGGVHN--AARS-------RIPVLVFAGRSPYTEEGELGS 121 (569)
T ss_pred cEEecC-CHHHHHHHHHHHHHhhCCCeEEEEecCHHHHHHHHHHHH--Hhhc-------CCCEEEEeccCCccccccccc
Confidence 889885 899999999999999443 33332233444445555532 3332 89999885321111111
Q ss_pred ---cCc-cch-HH--HHHccCCCcEEEeeCCHHHHHHHHHHHHhc-----CCCEEEeeccc
Q 015415 210 ---AEH-SQR-LE--SYFQSIPGIQMVACSTPYNAKGLMKAAIRS-----ENPVILFEHVL 258 (407)
Q Consensus 210 ---~tH-sq~-~e--a~~~~iPgl~V~~P~d~~e~~~~~~~a~~~-----~~Pv~ir~~r~ 258 (407)
..| .|. ++ .+++.+-.+ .+...+++++...++.|++. ++||+|-.+..
T Consensus 122 ~~~~~~~~qe~~d~~~~~~~vtk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~i~iP~D 181 (569)
T PRK08327 122 RNTRIHWTQEMRDQGGLVREYVKW-DYEIRRGDQIGEVVARAIQIAMSEPKGPVYLTLPRE 181 (569)
T ss_pred cccCcccchhhhhHHHHHhhhhhh-hcccCCHHHHHHHHHHHHHHHhcCCCCCEEEECcHH
Confidence 111 133 33 788876654 56778889998888888762 68999987754
No 124
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=92.47 E-value=4.4 Score=40.22 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=30.7
Q ss_pred ccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 221 QSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 221 ~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
...+-+....|.++.|+...++.|.+.++|.+|.
T Consensus 174 ~g~~YVA~~~~~~~~~l~~~i~~A~~~~Gps~I~ 207 (299)
T PRK11865 174 HGIPYVATASIGYPEDFMEKVKKAKEVEGPAYIQ 207 (299)
T ss_pred cCCCEEEEEeCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 5677788899999999999999999999999984
No 125
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=92.43 E-value=1.6 Score=42.74 Aligned_cols=142 Identities=8% Similarity=0.024 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceE-eccchhHHHHHHHHHHHhcC-CeeEEEecch-
Q 015415 91 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVL-DTPIAENSFTGMGIGAAMTG-LRPIVEGMNM- 167 (407)
Q Consensus 91 ~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i-~~GIaE~~~vg~A~GlA~~G-~rp~~~t~~~- 167 (407)
..+.++|.++....+++++ ..|+|.+. .+..-+.++++. -.| ..+.+|.|++++- -+++++...-
T Consensus 29 ~~v~~al~e~~~~~~d~iv-vsdiGc~~-------~~~~~~~~~~~~~~~G----~alPaAiGaklA~Pdr~VV~i~GDG 96 (277)
T PRK09628 29 KSIIRAIDKLGWNMDDVCV-VSGIGCSG-------RFSSYVNCNTVHTTHG----RAVAYATGIKLANPDKHVIVVSGDG 96 (277)
T ss_pred HHHHHHHHHhcCCCCCEEE-EeCcCHHH-------HhhccCCCCceeeccc----cHHHHHHHHHHHCCCCeEEEEECch
Confidence 3455777766433445544 45676421 111112244554 333 6778888888872 3556654443
Q ss_pred hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCCCCcC---------------c-c--chH--HHHHccCCCc
Q 015415 168 GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQLGAE---------------H-S--QRL--ESYFQSIPGI 226 (407)
Q Consensus 168 ~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~~G~t---------------H-s--q~~--ea~~~~iPgl 226 (407)
.|++-. .+-...++.. ++|++++. .++..|..+.+ + . ..+ ..+..+. |+
T Consensus 97 ~f~~~g-~~el~ta~r~--------nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~-G~ 166 (277)
T PRK09628 97 DGLAIG-GNHTIHGCRR--------NIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPTFDACKLATAA-GA 166 (277)
T ss_pred HHHHhh-HHHHHHHHHh--------CcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCCCCHHHHHHHC-CC
Confidence 232212 2222224433 78888776 34322211100 0 0 112 2333332 44
Q ss_pred EE---EeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 227 QM---VACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 227 ~V---~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
.- ....+++|+..+++.|++.++|++|-
T Consensus 167 ~~va~~~v~~~~el~~al~~Al~~~Gp~lIe 197 (277)
T PRK09628 167 SFVARESVIDPQKLEKLLVKGFSHKGFSFFD 197 (277)
T ss_pred ceEEEEccCCHHHHHHHHHHHHhCCCCEEEE
Confidence 33 57899999999999999999999883
No 126
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=92.28 E-value=7 Score=42.13 Aligned_cols=114 Identities=20% Similarity=0.159 Sum_probs=71.0
Q ss_pred CceEeccchhHHHHHHHHHHHhcCCeeEEEe-cchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCC-cC
Q 015415 134 LRVLDTPIAENSFTGMGIGAAMTGLRPIVEG-MNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLG-AE 211 (407)
Q Consensus 134 ~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t-~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G-~t 211 (407)
=|++.+- .|++++.||.|.|+..-+|-+++ .....+.-++.-|.+ |+.. ++||+++...-.....+ ..
T Consensus 50 i~~v~~r-hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gl~~--A~~~-------~~Pvl~I~G~~~~~~~~~~~ 119 (578)
T PRK06112 50 IRQIAYR-TENAGGAMADGYARVSGKVAVVTAQNGPAATLLVAPLAE--ALKA-------SVPIVALVQDVNRDQTDRNA 119 (578)
T ss_pred CcEEEec-cHHHHHHHHHHHHHHhCCCEEEEeCCCCcHHHHHHHHHH--Hhhc-------CCCEEEEecCCccccCCCCC
Confidence 4788885 99999999999998844444432 222334445555543 3332 79999885321111111 12
Q ss_pred ccchH--HHHHccCCCcEEEeeCCHHHHHHHHHHHHhc-----CCCEEEeecccc
Q 015415 212 HSQRL--ESYFQSIPGIQMVACSTPYNAKGLMKAAIRS-----ENPVILFEHVLL 259 (407)
Q Consensus 212 Hsq~~--ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~-----~~Pv~ir~~r~~ 259 (407)
+ |.+ ..+++.+--+ .....+++++...++.|++. ++||+|-.+...
T Consensus 120 ~-Q~~d~~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~Dv 172 (578)
T PRK06112 120 F-QELDHIALFQSCTKW-VRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPADL 172 (578)
T ss_pred c-cccChhhhhccccce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEcCHhH
Confidence 3 333 3788887654 45667788888877777752 589999876543
No 127
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=92.18 E-value=1.5 Score=47.61 Aligned_cols=113 Identities=14% Similarity=0.091 Sum_probs=72.1
Q ss_pred CceEeccchhHHHHHHHHHHHhc-CCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCC-cC
Q 015415 134 LRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLG-AE 211 (407)
Q Consensus 134 ~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G-~t 211 (407)
=|||.+ -.|++++.+|.|.|+. |...++.+.+...+.-++.-|. + |+.. ++||+++.........| ..
T Consensus 61 i~~i~~-rhE~~Aa~aA~gyar~tgk~gv~~~t~GPG~~n~l~gl~-~-A~~d-------~~Pvl~i~G~~~~~~~~~~~ 130 (616)
T PRK07418 61 LKHILV-RHEQGAAHAADGYARATGKVGVCFGTSGPGATNLVTGIA-T-AQMD-------SVPMVVITGQVPRPAIGTDA 130 (616)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHH-H-HHhc-------CCCEEEEecCCCccccCCCC
Confidence 389999 5999999999999988 5444433333344444556554 2 3332 79999885322221112 12
Q ss_pred ccchHH--HHHccCCCcEEEeeCCHHHHHHHHHHHHhc-----CCCEEEeeccc
Q 015415 212 HSQRLE--SYFQSIPGIQMVACSTPYNAKGLMKAAIRS-----ENPVILFEHVL 258 (407)
Q Consensus 212 Hsq~~e--a~~~~iPgl~V~~P~d~~e~~~~~~~a~~~-----~~Pv~ir~~r~ 258 (407)
+ |.++ .+++.+--+ .....+++++..+++.|++. ++||+|-.+..
T Consensus 131 ~-Qe~d~~~~~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~D 182 (616)
T PRK07418 131 F-QETDIFGITLPIVKH-SYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKD 182 (616)
T ss_pred c-ccccHHHHhhhccee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecchh
Confidence 3 3332 677766544 34577888888888888772 48999987754
No 128
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=92.13 E-value=2.2 Score=39.59 Aligned_cols=36 Identities=17% Similarity=0.215 Sum_probs=29.5
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 218 SYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 218 a~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
.+...+ |+..+...+++|+..+++++++.++|++|-
T Consensus 145 ~~A~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lIe 180 (205)
T cd02003 145 ANARSL-GARVEKVKTIEELKAALAKAKASDRTTVIV 180 (205)
T ss_pred HHHHhC-CCEEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 444544 677777899999999999999989999874
No 129
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=92.12 E-value=3 Score=44.65 Aligned_cols=122 Identities=12% Similarity=0.083 Sum_probs=74.9
Q ss_pred cchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEE-ecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec
Q 015415 123 VTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVE-GMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP 201 (407)
Q Consensus 123 ~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~-t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~ 201 (407)
+.+.+.+ . +=|++.+ -.|+++..||.|.|+..-+|-++ +.+...+.-++.-|.+ |+.. +.||+++..
T Consensus 31 l~dal~~-~-~i~~v~~-~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N~l~~l~~--A~~~-------~~Pvl~i~G 98 (549)
T PRK06457 31 LVDAIRK-S-KVKYVQV-RHEEGAALAASVEAKITGKPSACMGTSGPGSIHLLNGLYD--AKMD-------HAPVIALTG 98 (549)
T ss_pred HHHHHHh-c-CCeEEEe-CcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhhhHHHHHH--HHhc-------CCCEEEEec
Confidence 3455532 2 3577777 49999999999999995444443 2223334445555532 2332 799998852
Q ss_pred CCCCC--CCCcCccchH--HHHHccCCCcEEEeeCCHHHHHHHHHHHHh----cCCCEEEeecccc
Q 015415 202 GGVGR--QLGAEHSQRL--ESYFQSIPGIQMVACSTPYNAKGLMKAAIR----SENPVILFEHVLL 259 (407)
Q Consensus 202 ~G~~~--~~G~tHsq~~--ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~~r~~ 259 (407)
.-... ..+ .+ |.. ..+++.+--+ .....+++++...++.|++ .++||+|-.+...
T Consensus 99 ~~~~~~~~~~-~~-q~~d~~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~Dv 161 (549)
T PRK06457 99 QVESDMIGHD-YF-QEVNLTKLFDDVAVF-NQILINPENAEYIIRRAIREAISKRGVAHINLPVDI 161 (549)
T ss_pred CCCccccCCC-cc-cccchhhhhccceeE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCHhH
Confidence 21111 122 23 333 3788877654 5667777888877777765 3699999877654
No 130
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=91.90 E-value=1.6 Score=47.15 Aligned_cols=122 Identities=16% Similarity=0.111 Sum_probs=75.3
Q ss_pred cchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec
Q 015415 123 VTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP 201 (407)
Q Consensus 123 ~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~ 201 (407)
+.+.+.+. .=||+.+- .|++++.||-|.|+. |...++.+.+...+.-++.-|.+ |+.. ++||+++..
T Consensus 30 l~~al~~~--~i~~i~~~-hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~l~~i~~--A~~~-------~~Pvl~I~G 97 (586)
T PRK06276 30 FYDALYDS--DLIHILTR-HEQAAAHAADGYARASGKVGVCVATSGPGATNLVTGIAT--AYAD-------SSPVIALTG 97 (586)
T ss_pred HHHHHHhC--CCcEEEec-cHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHH--HHhc-------CCCEEEEeC
Confidence 34555322 23888885 999999999999988 54333333333344445666643 2332 799998852
Q ss_pred CCCCCCCC-cCccchHH--HHHccCCCcEEEeeCCHHHHHHHHHHHHhc-----CCCEEEeeccc
Q 015415 202 GGVGRQLG-AEHSQRLE--SYFQSIPGIQMVACSTPYNAKGLMKAAIRS-----ENPVILFEHVL 258 (407)
Q Consensus 202 ~G~~~~~G-~tHsq~~e--a~~~~iPgl~V~~P~d~~e~~~~~~~a~~~-----~~Pv~ir~~r~ 258 (407)
.-.....| ..+ |.++ ++++.+-.+ .....+++++...++.|++. ++||||-.+..
T Consensus 98 ~~~~~~~~~~~~-q~~d~~~l~~~~tk~-s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D 160 (586)
T PRK06276 98 QVPTKLIGNDAF-QEIDALGIFMPITKH-NFQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKD 160 (586)
T ss_pred CCCccccCCCCC-ccccHhhHHhhhcce-EEecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChh
Confidence 21111111 123 4333 688877665 44457788888888888773 58999987754
No 131
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=91.89 E-value=3 Score=44.92 Aligned_cols=124 Identities=14% Similarity=0.135 Sum_probs=79.6
Q ss_pred cchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec
Q 015415 123 VTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP 201 (407)
Q Consensus 123 ~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~ 201 (407)
+.+.|.+. .=|||.+- -||++..||.|.|+. |..-+|-........-+..-|. + |++. ..|++++.-
T Consensus 31 ~~dal~~~--~i~~I~~R-HEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~~tgla-~-A~~d-------~~Pll~itG 98 (550)
T COG0028 31 LYDALYDS--GIRHILVR-HEQGAAFAADGYARATGKPGVCLVTSGPGATNLLTGLA-D-AYMD-------SVPLLAITG 98 (550)
T ss_pred HHHHHHhC--CCcEEEec-cHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHH-H-HHhc-------CCCEEEEeC
Confidence 34555544 35889884 999999999999999 5533333333333444445453 2 3443 789998842
Q ss_pred CCCCCCCCcCccchHH--HHHccCCCcEEEeeCCHHHHHHHHHHHHhc-----CCCEEEeecccc
Q 015415 202 GGVGRQLGAEHSQRLE--SYFQSIPGIQMVACSTPYNAKGLMKAAIRS-----ENPVILFEHVLL 259 (407)
Q Consensus 202 ~G~~~~~G~tHsq~~e--a~~~~iPgl~V~~P~d~~e~~~~~~~a~~~-----~~Pv~ir~~r~~ 259 (407)
.=.....|....|..| ++++.+--+ .+...+++|+-..++.|++. ++||+|-.++..
T Consensus 99 qv~~~~~g~~afQe~D~~~l~~p~tk~-~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~Dv 162 (550)
T COG0028 99 QVPTSLIGTDAFQEVDQVGLFRPITKY-NFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKDV 162 (550)
T ss_pred CccccccCcchhhhcchhhHhhhhhee-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcChhH
Confidence 1112223322224444 788877655 67888999999999999873 589999877643
No 132
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=91.75 E-value=1.8 Score=46.78 Aligned_cols=112 Identities=11% Similarity=0.039 Sum_probs=70.3
Q ss_pred ceEeccchhHHHHHHHHHHHhc-CCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCCc-Cc
Q 015415 135 RVLDTPIAENSFTGMGIGAAMT-GLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGA-EH 212 (407)
Q Consensus 135 R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G~-tH 212 (407)
|++.+- .|++++.||.|.|+. |...++.+.+...+.-++.-|.+ |+.. +.||+++.........|. .+
T Consensus 53 ~~i~~r-hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl~~--A~~~-------~~Pvl~I~G~~~~~~~~~~~~ 122 (585)
T CHL00099 53 KHILVR-HEQGAAHAADGYARSTGKVGVCFATSGPGATNLVTGIAT--AQMD-------SVPLLVITGQVGRAFIGTDAF 122 (585)
T ss_pred eEEEec-CHHHHHHHHHHHHHhcCCcEEEEECCCCcHHHHHHHHHH--Hhhc-------CCCEEEEecCCCccccCCCCc
Confidence 788874 999999999999988 54444333333344445555532 3332 799998863211111211 12
Q ss_pred cchHH--HHHccCCCcEEEeeCCHHHHHHHHHHHHhc-----CCCEEEeeccc
Q 015415 213 SQRLE--SYFQSIPGIQMVACSTPYNAKGLMKAAIRS-----ENPVILFEHVL 258 (407)
Q Consensus 213 sq~~e--a~~~~iPgl~V~~P~d~~e~~~~~~~a~~~-----~~Pv~ir~~r~ 258 (407)
|.++ ++++.+--+ .....+++++..+++.|++. ++||||..+..
T Consensus 123 -q~~d~~~~~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~D 173 (585)
T CHL00099 123 -QEVDIFGITLPIVKH-SYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKD 173 (585)
T ss_pred -cccchhhhhcCceeE-EEEeCCHHHHHHHHHHHHHHHccCCCCeEEEecChh
Confidence 3333 677766544 45567888988888888762 57999987754
No 133
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=91.44 E-value=1.5 Score=47.02 Aligned_cols=111 Identities=11% Similarity=0.080 Sum_probs=68.2
Q ss_pred CCceEeccc--hhHHHHHHHHHHHhcC-CeeEEEecc-hhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCC
Q 015415 133 DLRVLDTPI--AENSFTGMGIGAAMTG-LRPIVEGMN-MGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQ 207 (407)
Q Consensus 133 p~R~i~~GI--aE~~~vg~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~ 207 (407)
|.+|+..+- +=-..+..|.|++++. -+++++... ..|++-+.| |. .+... ++|+++++ .++.++-
T Consensus 409 ~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~GDGsf~~~~~e-L~-ta~~~--------~lpvi~vV~NN~~~g~ 478 (564)
T PRK08155 409 PRQWLTSGGLGTMGFGLPAAIGAALANPERKVLCFSGDGSLMMNIQE-MA-TAAEN--------QLDVKIILMNNEALGL 478 (564)
T ss_pred CCeEEeCCCcccccchhHHHHHHHHhCCCCcEEEEEccchhhccHHH-HH-HHHHh--------CCCeEEEEEeCCcccc
Confidence 778997642 3334667888888774 345555444 345444433 43 23332 78887765 3432221
Q ss_pred -------------CCcC--ccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 208 -------------LGAE--HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 208 -------------~G~t--Hsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
.+.. +.-.+..+.+++ |+.-+...+.+|+...+++++..++|++|-
T Consensus 479 ~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe 539 (564)
T PRK08155 479 VHQQQSLFYGQRVFAATYPGKINFMQIAAGF-GLETCDLNNEADPQAALQEAINRPGPALIH 539 (564)
T ss_pred cHHHHHHhcCCCeeeccCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 1111 111334555555 777888999999999999999989999884
No 134
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=91.41 E-value=2.1 Score=45.88 Aligned_cols=114 Identities=11% Similarity=0.079 Sum_probs=72.6
Q ss_pred CceEeccchhHHHHHHHHHHHhc-CCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCC--CCC-
Q 015415 134 LRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGR--QLG- 209 (407)
Q Consensus 134 ~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~--~~G- 209 (407)
=|++.+- .|+++..||-|.|+. |...++.+.+.....-+..-|.+ |+.. ++||+++....... ..+
T Consensus 41 i~~i~~r-hE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gia~--A~~~-------~~Pvl~I~G~~~~~~~~~~~ 110 (554)
T TIGR03254 41 MRYIGFR-HEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNGLTALAN--ATTN-------CFPMIMISGSSERHIVDLQQ 110 (554)
T ss_pred CcEEEeC-CHHHHHHHHHHHHHHhCCCEEEEEccCccHHhHHHHHHH--HHhc-------CCCEEEEEccCCccccccCC
Confidence 3888885 999999999999988 54344333333334445555542 3332 79999885321111 111
Q ss_pred cCccchHH--HHHccCCCcEEEeeCCHHHHHHHHHHHHhc-----CCCEEEeecccc
Q 015415 210 AEHSQRLE--SYFQSIPGIQMVACSTPYNAKGLMKAAIRS-----ENPVILFEHVLL 259 (407)
Q Consensus 210 ~tHsq~~e--a~~~~iPgl~V~~P~d~~e~~~~~~~a~~~-----~~Pv~ir~~r~~ 259 (407)
..| |.++ ++++.+-.+ .+...+++++..+++.|++. ++||||-.+...
T Consensus 111 ~~~-q~~d~~~~~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~Dv 165 (554)
T TIGR03254 111 GDY-EEMDQLAAAKPFAKA-AYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAAV 165 (554)
T ss_pred CCc-chhhHHHHhhhhhee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHHH
Confidence 124 4443 788877665 66677888888888877762 579999877543
No 135
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=91.35 E-value=1.9 Score=46.47 Aligned_cols=114 Identities=12% Similarity=0.083 Sum_probs=73.5
Q ss_pred CceEeccchhHHHHHHHHHHHhc-CCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCC--CC-
Q 015415 134 LRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQ--LG- 209 (407)
Q Consensus 134 ~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~--~G- 209 (407)
=|++.+- .|+++..||.|.|+. |...++.+.+...+.-+..-|.+ |+.. ++||+++........ .+
T Consensus 48 i~~i~~r-hE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl~~--A~~~-------~~Pvl~I~G~~~~~~~~~~~ 117 (569)
T PRK09259 48 IRYIGFR-HEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLNGLTALAN--ATTN-------CFPMIMISGSSEREIVDLQQ 117 (569)
T ss_pred CCEEeeC-CHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHH--HHhc-------CCCEEEEEccCCcccccccC
Confidence 4889885 999999999999999 44444443333444445566643 3332 799998853211111 11
Q ss_pred cCccchHH--HHHccCCCcEEEeeCCHHHHHHHHHHHHhc-----CCCEEEeecccc
Q 015415 210 AEHSQRLE--SYFQSIPGIQMVACSTPYNAKGLMKAAIRS-----ENPVILFEHVLL 259 (407)
Q Consensus 210 ~tHsq~~e--a~~~~iPgl~V~~P~d~~e~~~~~~~a~~~-----~~Pv~ir~~r~~ 259 (407)
.++ |.++ .+++.+-.+ .+...++.++...++.|++. ++||||-.+...
T Consensus 118 ~~~-q~~d~~~~~~~~tk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 172 (569)
T PRK09259 118 GDY-EELDQLNAAKPFCKA-AFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAKV 172 (569)
T ss_pred CCc-cccchhhhhhhheee-eEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHHH
Confidence 124 4333 688877665 55567889988888888762 589999877543
No 136
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=91.32 E-value=5.7 Score=35.61 Aligned_cols=111 Identities=12% Similarity=0.140 Sum_probs=62.2
Q ss_pred CCceEeccchh-HHHHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCC-
Q 015415 133 DLRVLDTPIAE-NSFTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQ- 207 (407)
Q Consensus 133 p~R~i~~GIaE-~~~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~- 207 (407)
|.+|+..+-.= -..+..|.|++++- -+++++...- .|++ ....+. .+... ++|++++. .++..+.
T Consensus 40 ~~~~~~~~~g~mG~~lp~aiGaala~~~~~vv~i~GDG~f~~-~~~el~-ta~~~--------~~p~~~iV~nN~~~~~~ 109 (178)
T cd02002 40 PGSYFTLRGGGLGWGLPAAVGAALANPDRKVVAIIGDGSFMY-TIQALW-TAARY--------GLPVTVVILNNRGYGAL 109 (178)
T ss_pred CCCeeccCCccccchHHHHHHHHhcCCCCeEEEEEcCchhhc-cHHHHH-HHHHh--------CCCeEEEEEcCccHHHH
Confidence 78888764211 12345677877763 3455554342 3332 223332 23332 78888775 3332110
Q ss_pred -------C----------Cc---CccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 208 -------L----------GA---EHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 208 -------~----------G~---tHsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
. +. .+.-.+..+.... |+..+...+++|+...++++.+.++|++|-
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~vi~ 175 (178)
T cd02002 110 RSFLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAF-GVEAERVETPEELDEALREALAEGGPALIE 175 (178)
T ss_pred HHHHHHHcCCCcccccccccccCCCCCCHHHHHHHc-CCceEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 00 1111233444444 666777788999999999999988999873
No 137
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=91.30 E-value=5.4 Score=36.59 Aligned_cols=111 Identities=14% Similarity=0.172 Sum_probs=61.4
Q ss_pred CCceEeccchhHHHHHHHHHHHhcC-CeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccc-cEEEEe-cCCCCCCCC
Q 015415 133 DLRVLDTPIAENSFTGMGIGAAMTG-LRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTI-PIVIRG-PGGVGRQLG 209 (407)
Q Consensus 133 p~R~i~~GIaE~~~vg~A~GlA~~G-~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~l-pvvi~~-~~G~~~~~G 209 (407)
|++|+..| +=-..++.|.|++++. -+++++...-.-++.....+. .++.. ++ |++++. .++..+..+
T Consensus 41 ~~~~~~~g-~mG~~lpaAiGaala~p~~~Vv~i~GDG~f~m~~~eL~-ta~~~--------~l~~i~ivV~NN~~yg~~~ 110 (188)
T cd03371 41 AQDFLTVG-SMGHASQIALGIALARPDRKVVCIDGDGAALMHMGGLA-TIGGL--------APANLIHIVLNNGAHDSVG 110 (188)
T ss_pred cCceeecC-ccccHHHHHHHHHHhCCCCcEEEEeCCcHHHhhccHHH-HHHHc--------CCCCcEEEEEeCchhhccC
Confidence 48898764 2223567788888763 356666444322222333332 23322 44 454443 443322111
Q ss_pred --cC--ccchHHHHHccCCCcEE-EeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 210 --AE--HSQRLESYFQSIPGIQM-VACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 210 --~t--Hsq~~ea~~~~iPgl~V-~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
.+ +.-.+..+...+ |+.- ....+++|+..+++++++.++|++|.
T Consensus 111 ~~~~~~~~~d~~~~A~a~-G~~~~~~v~~~~el~~al~~a~~~~~p~lIe 159 (188)
T cd03371 111 GQPTVSFDVSLPAIAKAC-GYRAVYEVPSLEELVAALAKALAADGPAFIE 159 (188)
T ss_pred CcCCCCCCCCHHHHHHHc-CCceEEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 11 112334455544 5543 45679999999999999988999884
No 138
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=91.18 E-value=4 Score=40.21 Aligned_cols=143 Identities=15% Similarity=0.066 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEecc-c--hhHHHHHHHHHHHhcC-CeeEEEe
Q 015415 89 LFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTP-I--AENSFTGMGIGAAMTG-LRPIVEG 164 (407)
Q Consensus 89 ~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~G-I--aE~~~vg~A~GlA~~G-~rp~~~t 164 (407)
.-.++.++|.++....++.+++ .|+|-++- + + +|++++ . .=-..+.+|.|++++. -+++++.
T Consensus 28 il~~l~~al~~l~~~p~d~vvv-sdiGc~~~-----------~-~-~~~~~~~~~g~mG~alpaAiGaklA~Pd~~VV~i 93 (286)
T PRK11867 28 ILAALQRALAELGLDPENVAVV-SGIGCSGR-----------L-P-GYINTYGFHTIHGRALAIATGLKLANPDLTVIVV 93 (286)
T ss_pred HHHHHHHHHHHhCCCCCcEEEE-eCCccccc-----------c-C-ccccccchhhhhhcHHHHHHHHHHhCCCCcEEEE
Confidence 5677777887765555555554 56663210 1 2 344432 1 1134556788887773 3566654
Q ss_pred cchh-HHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCC---C-CCCc----------Cccc------hHHHHHcc
Q 015415 165 MNMG-FLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVG---R-QLGA----------EHSQ------RLESYFQS 222 (407)
Q Consensus 165 ~~~~-f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~---~-~~G~----------tHsq------~~ea~~~~ 222 (407)
..-. +++-....+.+ ++.. ++|++++. .++.+ + ...+ +... .+.++..+
T Consensus 94 ~GDG~~f~mg~~eL~t-A~r~--------nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a 164 (286)
T PRK11867 94 TGDGDALAIGGNHFIH-ALRR--------NIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVELALG 164 (286)
T ss_pred eCccHHHhCCHHHHHH-HHHh--------CCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHHHHH
Confidence 4543 34444555543 3433 78877765 33221 1 1111 1000 12233333
Q ss_pred C--CCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 223 I--PGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 223 i--Pgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
. ..+......+++|+..+++.|++.++|++|-
T Consensus 165 ~Ga~~va~~~~~~~~el~~al~~Al~~~Gp~lIe 198 (286)
T PRK11867 165 AGATFVARGFDSDVKQLTELIKAAINHKGFSFVE 198 (286)
T ss_pred CCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 3 2233335789999999999999999999883
No 139
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=90.68 E-value=9.4 Score=38.91 Aligned_cols=110 Identities=14% Similarity=0.109 Sum_probs=64.1
Q ss_pred CCceEeccchhHHHHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccc-cEEEEe-cCCCCCCC
Q 015415 133 DLRVLDTPIAENSFTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTI-PIVIRG-PGGVGRQL 208 (407)
Q Consensus 133 p~R~i~~GIaE~~~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~l-pvvi~~-~~G~~~~~ 208 (407)
|.+|+.+| +=-+...+|.|+|++- -+++++...- .|++.+-+ +. .++.. +. |++++. .+|..+..
T Consensus 214 ~~~f~~~G-sMG~a~p~AlG~ala~p~r~Vv~i~GDGsflm~~~e-L~-t~~~~--------~~~nli~VVlNNg~~~~~ 282 (361)
T TIGR03297 214 ARDFLTVG-SMGHASQIALGLALARPDQRVVCLDGDGAALMHMGG-LA-TIGTQ--------GPANLIHVLFNNGAHDSV 282 (361)
T ss_pred CCceEeec-hhhhHHHHHHHHHHHCCCCCEEEEEChHHHHHHHHH-HH-HHHHh--------CCCCeEEEEEcCcccccc
Confidence 67888765 3334557888888773 3566664332 23333322 32 23322 43 565554 44433222
Q ss_pred C--cCcc--chHHHHHccCCCc-EEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 209 G--AEHS--QRLESYFQSIPGI-QMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 209 G--~tHs--q~~ea~~~~iPgl-~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
| .++. -++..+.++. |+ ..+...+.+|+..+++++.+.++|++|-
T Consensus 283 g~q~~~~~~~d~~~iA~a~-G~~~~~~v~~~~eL~~al~~a~~~~gp~lIe 332 (361)
T TIGR03297 283 GGQPTVSQHLDFAQIAKAC-GYAKVYEVSTLEELETALTAASSANGPRLIE 332 (361)
T ss_pred CCcCCCCCCCCHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 2 2221 2333555555 43 5678899999999999999889999874
No 140
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=90.60 E-value=6.7 Score=35.64 Aligned_cols=143 Identities=15% Similarity=0.189 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEEecchhH
Q 015415 90 FEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGF 169 (407)
Q Consensus 90 r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~~~~f 169 (407)
|+++.+.|.+.+. +.+++ .|.+... +.. -.+ ... |.+|+..|. =-..+..|.|++++..+++++...-.-
T Consensus 1 ~~~~~~~l~~~~~--~~~vv--~d~G~~~--~~~-~~~-~~~-~~~~~~~g~-mG~~lp~AiGaala~~~~vv~i~GDG~ 70 (179)
T cd03372 1 RRDAIKTLIADLK--DELVV--SNIGFPS--KEL-YAA-GDR-PLNFYMLGS-MGLASSIGLGLALAQPRKVIVIDGDGS 70 (179)
T ss_pred CHHHHHHHHHhCC--CCeEE--eCCCHhH--HHH-HHc-cCc-ccccccccc-hhhHHHHHHHHHhcCCCcEEEEECCcH
Confidence 3556667776665 33333 4554311 010 111 123 677775442 223445788888775477777555322
Q ss_pred HHHHHHHHHHhhhhhchhcCCccc-ccEEEE-ecCCCCCCCCc-----CccchHHHHHccCCCcEEEeeC-CHHHHHHHH
Q 015415 170 LLLAFNQISNNCGMLHYTSGGQFT-IPIVIR-GPGGVGRQLGA-----EHSQRLESYFQSIPGIQMVACS-TPYNAKGLM 241 (407)
Q Consensus 170 ~~ra~dqi~~~~a~~~~~~gg~~~-lpvvi~-~~~G~~~~~G~-----tHsq~~ea~~~~iPgl~V~~P~-d~~e~~~~~ 241 (407)
++.....+- .++.. + .|++++ ..++..+..+. .+...+..+.++. |+..+... +++|+..++
T Consensus 71 f~m~~~el~-ta~~~--------~~~~l~vvV~NN~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~~el~~al 140 (179)
T cd03372 71 LLMNLGALA-TIAAE--------KPKNLIIVVLDNGAYGSTGNQPTHAGKKTDLEAVAKAC-GLDNVATVASEEAFEKAV 140 (179)
T ss_pred HHhCHHHHH-HHHHc--------CCCCEEEEEEcCccccccCCCCCCCCCCCCHHHHHHHc-CCCeEEecCCHHHHHHHH
Confidence 222222332 23322 4 345544 34332221121 1222344444443 55555666 999999999
Q ss_pred HHHHhcCCCEEEe
Q 015415 242 KAAIRSENPVILF 254 (407)
Q Consensus 242 ~~a~~~~~Pv~ir 254 (407)
+++. ++|.+|-
T Consensus 141 ~~a~--~gp~lIe 151 (179)
T cd03372 141 EQAL--DGPSFIH 151 (179)
T ss_pred HHhc--CCCEEEE
Confidence 9998 7899874
No 141
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=90.38 E-value=4.9 Score=42.98 Aligned_cols=148 Identities=16% Similarity=0.095 Sum_probs=81.3
Q ss_pred HHHHHHHhhhC--CCEEEEeCCCCCCCCccccchhhhhhhCC-CceEeccchhHHHHHHHHHHHhc-CCeeEEEecchhH
Q 015415 94 REGLEEEMDRD--PHVCVMGEDVGHYGGSYKVTKGLADKYGD-LRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGMNMGF 169 (407)
Q Consensus 94 ~~~L~~l~~~d--~~vvvi~aDl~~~~g~~~~~~~~~~~fgp-~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~~~~f 169 (407)
++.|.+.+++. +.|+.+-.|.. ..+.+.+.+ . + -|++.+ -.|+++.-||-|.|+. |...++.+.+...
T Consensus 3 ~~~l~~~L~~~Gv~~vFGvpG~~~-----~~l~~al~~-~-~~i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG 74 (535)
T TIGR03394 3 AEALLRALKDRGAQEMFGIPGDFA-----LPFFKVIEE-T-GILPLHTL-SHEPAVGFAADAAARYRGTLGVAAVTYGAG 74 (535)
T ss_pred HHHHHHHHHHcCCCEEEECCCccc-----HHHHHHHhh-C-CCCeEEcc-cCcchHHHHHhHHHHhhCCceEEEEecchH
Confidence 44555555433 33444433321 233455533 3 3 488887 4999999999999999 5444444334344
Q ss_pred HHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCC--CCC-cCccch--HH---HHHccCCCcEEEeeCCHHHHHHHH
Q 015415 170 LLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGR--QLG-AEHSQR--LE---SYFQSIPGIQMVACSTPYNAKGLM 241 (407)
Q Consensus 170 ~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~--~~G-~tHsq~--~e---a~~~~iPgl~V~~P~d~~e~~~~~ 241 (407)
..-+..-|.. |+.. ++||+++...-... +.+ ..|+|. ++ .+++.+--+ .....+++++...+
T Consensus 75 ~~n~~~gia~--A~~~-------~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtk~-~~~v~~~~~~~~~~ 144 (535)
T TIGR03394 75 AFNMVNAIAG--AYAE-------KSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKEVTCD-QAVLDDPATAPAEI 144 (535)
T ss_pred HHhhhhHHHH--Hhhc-------CCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhhheEE-EEEeCChHHhHHHH
Confidence 4445565542 3332 79999885321111 122 223343 32 567766444 23345555555555
Q ss_pred HHHH----hcCCCEEEeecccc
Q 015415 242 KAAI----RSENPVILFEHVLL 259 (407)
Q Consensus 242 ~~a~----~~~~Pv~ir~~r~~ 259 (407)
+.|+ ..++||+|-.+...
T Consensus 145 ~~A~~~a~~~~gPv~i~iP~Dv 166 (535)
T TIGR03394 145 ARVLGSARELSRPVYLEIPRDM 166 (535)
T ss_pred HHHHHHHHHCCCCEEEEechhh
Confidence 5444 45789999877654
No 142
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=89.93 E-value=2.6 Score=38.17 Aligned_cols=99 Identities=14% Similarity=0.142 Sum_probs=51.4
Q ss_pred HHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCCCCc-----------Cc
Q 015415 147 TGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQLGA-----------EH 212 (407)
Q Consensus 147 vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~~G~-----------tH 212 (407)
++.|.|++++. -++++....- .|++-.+..|.. +... ++|+++++ .++..+..+. ..
T Consensus 57 l~~AiGa~la~p~~~Vv~i~GDG~f~~~g~~eL~t-a~~~--------~l~i~vvV~nN~~~g~~~~~~~~~~~~~~~~~ 127 (178)
T cd02008 57 IGVAIGMAKASEDKKVVAVIGDSTFFHSGILGLIN-AVYN--------KANITVVILDNRTTAMTGGQPHPGTGKTLTEP 127 (178)
T ss_pred HHHHhhHHhhCCCCCEEEEecChHHhhccHHHHHH-HHHc--------CCCEEEEEECCcceeccCCCCCCCCcccccCC
Confidence 34677777764 3566654442 333222444533 3332 78877765 3322211110 11
Q ss_pred --cchHHHHHcc--CCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 213 --SQRLESYFQS--IPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 213 --sq~~ea~~~~--iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
.-++..+.++ .++..|..|.+-+++...++.+++.++|.+|.
T Consensus 128 ~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~~~gp~lI~ 173 (178)
T cd02008 128 TTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALAVPGVSVII 173 (178)
T ss_pred CCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHHHhCCCCEEEE
Confidence 0123344444 34444445555555558889999889999874
No 143
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=89.81 E-value=2.5 Score=39.13 Aligned_cols=111 Identities=11% Similarity=0.082 Sum_probs=63.6
Q ss_pred CCceEeccc-hhH-HHHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCC
Q 015415 133 DLRVLDTPI-AEN-SFTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQ 207 (407)
Q Consensus 133 p~R~i~~GI-aE~-~~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~ 207 (407)
|.+|++.+- .=. ..++.|+|++++. -|++++...- .|++-. ..|-. +... ++|+++++ .++..+.
T Consensus 47 ~~~~~~~~~~GsmG~~lpaaiGa~la~p~~~vv~i~GDG~f~m~~-~eL~T-a~~~--------~lpviivV~NN~~yg~ 116 (202)
T cd02006 47 PRHWINCGQAGPLGWTVPAALGVAAADPDRQVVALSGDYDFQFMI-EELAV-GAQH--------RIPYIHVLVNNAYLGL 116 (202)
T ss_pred CCeEEccCCccchhhhhHHHHhHHhhCCCCeEEEEEeChHhhccH-HHHHH-HHHh--------CCCeEEEEEeCchHHH
Confidence 788987642 211 2455788888773 4667765443 333333 33322 3332 78887776 3332211
Q ss_pred C--------C-----cCcc-----------chHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----cCCCEEEe
Q 015415 208 L--------G-----AEHS-----------QRLESYFQSIPGIQMVACSTPYNAKGLMKAAIR----SENPVILF 254 (407)
Q Consensus 208 ~--------G-----~tHs-----------q~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir 254 (407)
. + ..+. -.+..+.+++ |+.-+...++.|+..++++++. .++|++|-
T Consensus 117 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~~p~lie 190 (202)
T cd02006 117 IRQAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGL-GCKAIRVTKPEELAAAFEQAKKLMAEHRVPVVVE 190 (202)
T ss_pred HHHHHHHhcCccccccccccccccccCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHHhcccCCCcEEEE
Confidence 0 0 0010 1122333433 6777888999999999999985 57899874
No 144
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=89.67 E-value=4.4 Score=43.36 Aligned_cols=111 Identities=14% Similarity=0.187 Sum_probs=65.1
Q ss_pred CCceEecc-c-hhHHHHHHHHHHHhcC--CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCC
Q 015415 133 DLRVLDTP-I-AENSFTGMGIGAAMTG--LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGR 206 (407)
Q Consensus 133 p~R~i~~G-I-aE~~~vg~A~GlA~~G--~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~ 206 (407)
|.+|+..+ . +=-..+..|.|++++. -|++++...- .|++-. ..|- .+... ++|++++. .++..+
T Consensus 386 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~~Vv~i~GDGsf~~~~-~eL~-Ta~~~--------~lpi~ivV~NN~~~g 455 (549)
T PRK06457 386 EQTFIFSAWLGSMGIGVPGSVGASFAVENKRQVISFVGDGGFTMTM-MELI-TAKKY--------DLPVKIIIYNNSKLG 455 (549)
T ss_pred CCeEEeCCCcchhhhhHHHHHHHHhcCCCCCeEEEEEcccHHhhhH-HHHH-HHHHH--------CCCeEEEEEECCccc
Confidence 67777643 1 1111445688888774 3777775553 333333 3342 23332 78877765 333222
Q ss_pred C-------CCc--Cc----cchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 207 Q-------LGA--EH----SQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 207 ~-------~G~--tH----sq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
. .|. .+ .-.+..+...+ |+.-....+++|+...++++++.++|++|-
T Consensus 456 ~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe 515 (549)
T PRK06457 456 MIKFEQEVMGYPEWGVDLYNPDFTKIAESI-GFKGFRLEEPKEAEEIIEEFLNTKGPAVLD 515 (549)
T ss_pred hHHHHHHHhcCCcccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 111 11 11233455544 677778899999999999999989999984
No 145
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=89.62 E-value=0.85 Score=40.12 Aligned_cols=110 Identities=19% Similarity=0.302 Sum_probs=65.5
Q ss_pred eEeccc-hhHHHHHHHHHHHhcCCeeEEEecchhHH--HHHHHHHHHhhhhhchhcCCcccccEEEEec-CCCCCCCCcC
Q 015415 136 VLDTPI-AENSFTGMGIGAAMTGLRPIVEGMNMGFL--LLAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGVGRQLGAE 211 (407)
Q Consensus 136 ~i~~GI-aE~~~vg~A~GlA~~G~rp~~~t~~~~f~--~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~~~~~G~t 211 (407)
+.+.+. .|...+|+++|+.++|.+|-.-.+.+..- --++..+. .. .++|+.+... -|....+=+.
T Consensus 43 i~~i~vtREEeg~GIcAGa~lAGkk~ailmQnsGlGNsiNal~SL~----~t-------y~iPl~ml~ShRG~~~E~i~A 111 (172)
T COG4032 43 IPEIPVTREEEGVGICAGAYLAGKKPAILMQNSGLGNSINALASLY----VT-------YKIPLLMLASHRGVLKEGIEA 111 (172)
T ss_pred cccccccchhcceeeehhhhhcCCCcEEEEeccCcchHHHHHHHHH----HH-------hccchhhhhhccchhhcCCcc
Confidence 444443 69999999999999999999987776432 23333321 11 2566655542 3433222111
Q ss_pred c--cc-hHHHHHccCCCcEEEeeCCHHHHHHHHHHH----HhcCCCEEEeecc
Q 015415 212 H--SQ-RLESYFQSIPGIQMVACSTPYNAKGLMKAA----IRSENPVILFEHV 257 (407)
Q Consensus 212 H--sq-~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a----~~~~~Pv~ir~~r 257 (407)
+ .+ ....++.. -++.-+.|..|+|+..++..+ ++...||.++.+.
T Consensus 112 QVpmGr~~~kiLe~-~~lpt~t~~~p~Ea~~li~~~~~~a~~~s~pv~vlls~ 163 (172)
T COG4032 112 QVPMGRALPKILEG-LELPTYTIIGPEEALPLIENAILDAFENSRPVAVLLSP 163 (172)
T ss_pred ccccchhhHHHHhh-cCCcccccCCHHHHHHHHHHHHHHHHHcCCceEEEech
Confidence 1 00 11234443 245578889999987776655 4568899987553
No 146
>PRK08617 acetolactate synthase; Reviewed
Probab=89.47 E-value=3.5 Score=44.10 Aligned_cols=111 Identities=21% Similarity=0.291 Sum_probs=66.1
Q ss_pred hCCCceEeccchhHHHHH----HHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCC
Q 015415 131 YGDLRVLDTPIAENSFTG----MGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGG 203 (407)
Q Consensus 131 fgp~R~i~~GIaE~~~vg----~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G 203 (407)
+.|.+|+..+ -.+.+| .|+|++++. -+++++...- .|++-+ ..|- .+... ++|++++. .+|
T Consensus 402 ~~p~~~~~~~--~~g~mG~~lpaaiGa~la~p~~~vv~i~GDGsf~m~~-~eL~-Ta~~~--------~lpv~~vV~NN~ 469 (552)
T PRK08617 402 YEPRHLLFSN--GMQTLGVALPWAIAAALVRPGKKVVSVSGDGGFLFSA-MELE-TAVRL--------KLNIVHIIWNDG 469 (552)
T ss_pred cCCCeEEecC--ccccccccccHHHhhHhhcCCCcEEEEEechHHhhhH-HHHH-HHHHh--------CCCeEEEEEECC
Confidence 3477887653 134566 788888773 3555554453 344433 3342 23332 78887665 343
Q ss_pred CCCCC------------CcC-ccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 204 VGRQL------------GAE-HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 204 ~~~~~------------G~t-Hsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
..+.. |.. +.-.+..+.+.+ |+.-+...+++|+..+++++++.++|++|-
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lie 532 (552)
T PRK08617 470 HYNMVEFQEEMKYGRSSGVDFGPVDFVKYAESF-GAKGLRVTSPDELEPVLREALATDGPVVID 532 (552)
T ss_pred ccchHHHHHHhhcCCcccCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCcEEEE
Confidence 22210 111 111233444444 677889999999999999999888999884
No 147
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=89.42 E-value=5 Score=42.88 Aligned_cols=114 Identities=16% Similarity=0.119 Sum_probs=69.0
Q ss_pred CceEeccchhHHHHHHHHHHHhc-CCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecC-CCC-CCCC-
Q 015415 134 LRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPG-GVG-RQLG- 209 (407)
Q Consensus 134 ~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~-G~~-~~~G- 209 (407)
=|||.+- .|++++.||-|.|+. | +.++.+.+...+.-+..-|.+ |+.. ++||+++... ... .+.+
T Consensus 40 i~~v~~r-hE~~A~~mAdgyar~tg-~gv~~~t~GPG~~n~~~gla~--A~~d-------~~Pvl~I~G~~~~~~~~~~~ 108 (539)
T TIGR03393 40 ICWVGCA-NELNAAYAADGYARCKG-AAALLTTFGVGELSAINGIAG--SYAE-------HLPVIHIVGAPGTAAQQRGE 108 (539)
T ss_pred CcEeccC-CcccHHHHhhhhhhhcC-ceEEEEecCccHHHHhhHHHH--Hhhc-------cCCEEEEECCCCcchhhcCc
Confidence 3788884 999999999999999 6 566543333344445555543 3332 7999988521 110 0011
Q ss_pred c--------CccchHHHHHccCCCcE-EEeeCC-HHHHHHHHHHHHhcCCCEEEeecccc
Q 015415 210 A--------EHSQRLESYFQSIPGIQ-MVACST-PYNAKGLMKAAIRSENPVILFEHVLL 259 (407)
Q Consensus 210 ~--------tHsq~~ea~~~~iPgl~-V~~P~d-~~e~~~~~~~a~~~~~Pv~ir~~r~~ 259 (407)
. .+ |.+..+++.+--+. +..|.+ +.++..+++.|+..++||+|-.+...
T Consensus 109 ~~~~~~~~~~~-q~~~~~~~~itk~~~~~~~~~~~~~i~~a~~~A~~~~gPv~l~iP~Dv 167 (539)
T TIGR03393 109 LLHHTLGDGDF-RHFYRMAAEVTVAQAVLTEQNATAEIDRVITTALRERRPGYLMLPVDV 167 (539)
T ss_pred eeeeecCCCch-HHHHHHhhceEEEEEEeChhhhHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 0 12 22234555433221 124555 67788888888888899999877654
No 148
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=89.25 E-value=2 Score=39.73 Aligned_cols=105 Identities=17% Similarity=0.238 Sum_probs=59.6
Q ss_pred eEeccchhHHHHHHHHHHHhcC-----CeeEEEecchhHHH--HHHHHHHHhhhhhchhcCCcccccEEEEec-CCCCCC
Q 015415 136 VLDTPIAENSFTGMGIGAAMTG-----LRPIVEGMNMGFLL--LAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGVGRQ 207 (407)
Q Consensus 136 ~i~~GIaE~~~vg~A~GlA~~G-----~rp~~~t~~~~f~~--ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~~~~ 207 (407)
.+.+| +=-..+++|+|+|++- -+++++.+.-.-++ ..+|.+. .++.. +.|++++.. ++. +.
T Consensus 71 ~~~~G-~lG~gl~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~-~A~~~--------~~~li~vvdnN~~-~~ 139 (195)
T cd02007 71 AFGTG-HSSTSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALN-NAGYL--------KSNMIVILNDNEM-SI 139 (195)
T ss_pred eECCC-chhhhHHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHH-HHHHh--------CCCEEEEEECCCc-cc
Confidence 34555 3345566777777762 23444433432233 4556663 34443 678888774 443 22
Q ss_pred CCcCccchHHHHHccCCCcEE---EeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 208 LGAEHSQRLESYFQSIPGIQM---VACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 208 ~G~tHsq~~ea~~~~iPgl~V---~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
++++. ..+..++. -|+.+ +...|.+++...++.+.+.++|++|.
T Consensus 140 ~~~~~--~~~~~~~a-~G~~~~~~vdG~d~~~l~~a~~~a~~~~~P~~I~ 186 (195)
T cd02007 140 SPNVG--TPGNLFEE-LGFRYIGPVDGHNIEALIKVLKEVKDLKGPVLLH 186 (195)
T ss_pred CCCCC--CHHHHHHh-cCCCccceECCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 33332 23344443 24443 45568888998888887778899985
No 149
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=88.91 E-value=2 Score=43.56 Aligned_cols=101 Identities=12% Similarity=0.137 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhcCCee-EEEecchhHH--H-HHHHHHHHhhhhhchhcCCcccccEEEEec-CCCCCCCCcC--ccc-h
Q 015415 144 NSFTGMGIGAAMTGLRP-IVEGMNMGFL--L-LAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGVGRQLGAE--HSQ-R 215 (407)
Q Consensus 144 ~~~vg~A~GlA~~G~rp-~~~t~~~~f~--~-ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~~~~~G~t--Hsq-~ 215 (407)
-.++|.|.++-+.|... ++.+++.+.. + --+|-+ |-++.+ ++|||+++- ++..-...-. ... .
T Consensus 143 ~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEal-N~A~v~--------klPvvf~ieNN~yAiSvp~~~q~~~~~ 213 (358)
T COG1071 143 PLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEAL-NFAAVW--------KLPVVFVIENNQYAISVPRSRQTAAEI 213 (358)
T ss_pred cHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHH-HHHHHh--------cCCEEEEEecCCceeecchhhcccchh
Confidence 35556666666667444 4444554432 1 334544 456654 899999983 4321111111 111 1
Q ss_pred HH--HHHccCCCcEEEeeCCHHHHHHHHHHHHhc----CCCEEEe
Q 015415 216 LE--SYFQSIPGIQMVACSTPYNAKGLMKAAIRS----ENPVILF 254 (407)
Q Consensus 216 ~e--a~~~~iPgl~V~~P~d~~e~~~~~~~a~~~----~~Pv~ir 254 (407)
+. +..-.|||++| .=.|...++.++++|.+. .+|++|-
T Consensus 214 ~~~ra~aygipgv~V-DG~D~~avy~~~~~A~e~AR~g~GPtLIE 257 (358)
T COG1071 214 IAARAAAYGIPGVRV-DGNDVLAVYEAAKEAVERARAGEGPTLIE 257 (358)
T ss_pred HHhhhhccCCCeEEE-CCcCHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 11 45558999988 888999999999888763 6799984
No 150
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=88.61 E-value=6.7 Score=41.99 Aligned_cols=147 Identities=18% Similarity=0.293 Sum_probs=80.9
Q ss_pred HHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccc--hhHHHHHHHHHHHhcCCeeEEEecch-hH
Q 015415 93 LREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPI--AENSFTGMGIGAAMTGLRPIVEGMNM-GF 169 (407)
Q Consensus 93 ~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GI--aE~~~vg~A~GlA~~G~rp~~~t~~~-~f 169 (407)
+-..|.+.+.++++++++. |.+.. ......+..-+.|.+|++.+. +=-..+..|+|++++--|+++....- .|
T Consensus 371 ~~~~l~~~l~~~~~~ivv~-d~~~~---~~~~~~~~~~~~p~~~~~~~~~gsmG~~lpaaiGaala~~~~vv~i~GDGsf 446 (554)
T TIGR03254 371 ALEAIRDVLKDNPDIYLVN-EGANT---LDLARNVIDMYKPRHRLDVGTWGVMGIGMGYAIAAAVETGKPVVALEGDSAF 446 (554)
T ss_pred HHHHHHHhcCCCCCEEEEe-CCchH---HHHHHHhcccCCCCcEeeCCCCCcCCchHHHHHHHHhcCCCcEEEEEcCchh
Confidence 4556766665545655554 33211 111112222223788887652 22244566777777745667765553 34
Q ss_pred HHHHHHHHHHhhhhhchhcCCcccccEEEEe-cC-CCC-C----CCCc----C---ccchHHHHHccCCCcEEEeeCCHH
Q 015415 170 LLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PG-GVG-R----QLGA----E---HSQRLESYFQSIPGIQMVACSTPY 235 (407)
Q Consensus 170 ~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~-G~~-~----~~G~----t---Hsq~~ea~~~~iPgl~V~~P~d~~ 235 (407)
++-+.| |- .++.. ++|++++. .+ |.. + ..+. + +.-.+..+...+ |..-+...+++
T Consensus 447 ~m~~~E-L~-Ta~r~--------~l~v~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~-G~~~~~v~~~~ 515 (554)
T TIGR03254 447 GFSGME-VE-TICRY--------NLPVCVVIFNNGGIYRGDDVNVVGADPAPTVLVHGARYDKMMKAF-GGVGYNVTTPD 515 (554)
T ss_pred cccHHH-HH-HHHHc--------CCCEEEEEEeChhhhhhhhhhhcCCCCCccccCCCCCHHHHHHHC-CCeEEEeCCHH
Confidence 443333 43 33333 78877765 33 321 1 0111 1 111233444544 66677789999
Q ss_pred HHHHHHHHHHhcCCCEEEe
Q 015415 236 NAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 236 e~~~~~~~a~~~~~Pv~ir 254 (407)
|+...+++++..++|++|-
T Consensus 516 el~~al~~a~~~~~p~lIe 534 (554)
T TIGR03254 516 ELKAALNEALASGKPTLIN 534 (554)
T ss_pred HHHHHHHHHHhCCCCEEEE
Confidence 9999999999889999873
No 151
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=88.41 E-value=5 Score=39.85 Aligned_cols=34 Identities=12% Similarity=0.127 Sum_probs=30.6
Q ss_pred ccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 221 QSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 221 ~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
..++-+-...|.++.++...++.|++.++|.+|.
T Consensus 170 ~g~~yVA~~~~~~~~~~~~~i~~A~~~~Gps~I~ 203 (300)
T PRK11864 170 HKVPYVATASIAYPEDFIRKLKKAKEIRGFKFIH 203 (300)
T ss_pred cCCCEEEEEeCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 4577788899999999999999999999999984
No 152
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=88.11 E-value=5 Score=43.06 Aligned_cols=111 Identities=13% Similarity=0.139 Sum_probs=67.0
Q ss_pred CCceEeccc--hhHHHHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCC
Q 015415 133 DLRVLDTPI--AENSFTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQ 207 (407)
Q Consensus 133 p~R~i~~GI--aE~~~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~ 207 (407)
|.+|++.+- +=-..++.|+|++++. -|++++...- .|++-..| |- .+... ++|++++. .+|..+.
T Consensus 404 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~e-L~-Ta~~~--------~l~i~~vV~NN~~y~~ 473 (561)
T PRK06048 404 PRTFITSGGLGTMGYGFPAAIGAKVGKPDKTVIDIAGDGSFQMNSQE-LA-TAVQN--------DIPVIVAILNNGYLGM 473 (561)
T ss_pred CCeEEeCCCccccccHHHHHHHHHHhCCCCcEEEEEeCchhhccHHH-HH-HHHHc--------CCCeEEEEEECCccHH
Confidence 778997642 3344677888888874 3566664453 34433323 32 23332 78877665 3332211
Q ss_pred ------------CCcC---ccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 208 ------------LGAE---HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 208 ------------~G~t---Hsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
...+ +.-.+..+.+.+ |.+-+...+..|+...+++++..++|++|-
T Consensus 474 i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~t~~el~~al~~a~~~~~p~lie 534 (561)
T PRK06048 474 VRQWQELFYDKRYSHTCIKGSVDFVKLAEAY-GALGLRVEKPSEVRPAIEEAVASDRPVVID 534 (561)
T ss_pred HHHHHHHHcCCcccccCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 0001 112233444444 677788999999999999999999999884
No 153
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=88.02 E-value=4.4 Score=43.48 Aligned_cols=148 Identities=19% Similarity=0.155 Sum_probs=80.0
Q ss_pred HHHHHHHHhhhC--CCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCe-eEEEecchhH
Q 015415 93 LREGLEEEMDRD--PHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLR-PIVEGMNMGF 169 (407)
Q Consensus 93 ~~~~L~~l~~~d--~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~r-p~~~t~~~~f 169 (407)
.++.|.+.+++. +.++.+-.|-. ..+.+.+.+.- .=||+.+ ..|+++..+|-|.|+..-+ .++...+...
T Consensus 11 ~a~~l~~~L~~~GV~~vFgvpG~~~-----~~l~~~l~~~~-~i~~v~~-~hE~~A~~aAdgyar~tg~~~v~~vt~GpG 83 (568)
T PRK07449 11 WAAVILEELTRLGVRHVVIAPGSRS-----TPLTLAAAEHP-RLRLHTH-FDERSAGFLALGLAKASKRPVAVIVTSGTA 83 (568)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcc-----HHHHHHHHhCC-CcEEEee-cCcccHHHHHHHHHHhhCCCEEEEECCccH
Confidence 445555555543 44444433311 12334443221 2388888 4999999999999988434 3333334444
Q ss_pred HHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCC--CCCCcCccchH--HHHHccCCCcEEEeeCCHH-----HHHHH
Q 015415 170 LLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVG--RQLGAEHSQRL--ESYFQSIPGIQMVACSTPY-----NAKGL 240 (407)
Q Consensus 170 ~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~--~~~G~tHsq~~--ea~~~~iPgl~V~~P~d~~-----e~~~~ 240 (407)
+.-++.-|.+ |+.. ++||+++...... -+.|. | |.+ .++++.+-...+-.|.... .+..+
T Consensus 84 ~~N~l~~i~~--A~~~-------~~Pvl~IsG~~~~~~~~~~~-~-q~~d~~~~~~~~t~~~v~~~~~~~~~~~~~~~~~ 152 (568)
T PRK07449 84 VANLYPAVIE--AGLT-------GVPLIVLTADRPPELRDCGA-N-QAIDQLGLFGSYPFTSLALPEPTQDILAYWLVTT 152 (568)
T ss_pred HHhhhHHHHH--Hhhc-------CCcEEEEECCCCHHHhcCCC-C-ceecHhhHhhhhhhhccCCCCCCchhHHHHHHHH
Confidence 5556666643 3332 7999998532211 12233 3 333 3677776655555565521 13345
Q ss_pred HHHHHh----cCCCEEEeeccc
Q 015415 241 MKAAIR----SENPVILFEHVL 258 (407)
Q Consensus 241 ~~~a~~----~~~Pv~ir~~r~ 258 (407)
++.+.. .++||+|-.+..
T Consensus 153 ~~a~~~a~~~~~GPV~i~iP~D 174 (568)
T PRK07449 153 IDAALAAQTLQAGPVHINCPFR 174 (568)
T ss_pred HHHHHHhcCCCCCCEEEeCCCC
Confidence 555332 368999976643
No 154
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=87.89 E-value=5.1 Score=42.96 Aligned_cols=146 Identities=17% Similarity=0.141 Sum_probs=79.6
Q ss_pred HHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccc--hhHHHHHHHHHHHhcC-CeeEEEecc-h
Q 015415 92 ALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPI--AENSFTGMGIGAAMTG-LRPIVEGMN-M 167 (407)
Q Consensus 92 a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GI--aE~~~vg~A~GlA~~G-~rp~~~t~~-~ 167 (407)
.+.+.|.+.+.+| .+++ .|.+... .+. ...+.-.. |.+|++.+- +--..++.|.|++++. -++++.... .
T Consensus 367 ~~~~~l~~~l~~~-~iv~--~d~g~~~-~~~-~~~~~~~~-p~~~~~~~~~g~mG~~l~aaiGa~la~~~~~vv~~~GDG 440 (558)
T TIGR00118 367 QVIEELSRVTKDE-AIVT--TDVGQHQ-MWA-AQFYPFRK-PRRFITSGGLGTMGFGLPAAIGAKVAKPESTVICITGDG 440 (558)
T ss_pred HHHHHHHhhCCCC-eEEE--eCCcHHH-HHH-HHhcccCC-CCeEEeCCccccccchhhHHHhhhhhCCCCcEEEEEcch
Confidence 3566666666543 3333 3443211 111 12222233 788998752 2334567888888773 244554334 2
Q ss_pred hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCC---------CC---cCc--c-chHHHHHccCCCcEEEee
Q 015415 168 GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQ---------LG---AEH--S-QRLESYFQSIPGIQMVAC 231 (407)
Q Consensus 168 ~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~---------~G---~tH--s-q~~ea~~~~iPgl~V~~P 231 (407)
.|++.+-| |- .+... ++|++++. .+|.++. .+ .++ . -.+..+...+ |+.-+..
T Consensus 441 ~f~~~~~e-L~-ta~~~--------~l~~~~vv~NN~~~~~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v 509 (558)
T TIGR00118 441 SFQMNLQE-LS-TAVQY--------DIPVKILILNNRYLGMVRQWQELFYEERYSHTHMGSLPDFVKLAEAY-GIKGIRI 509 (558)
T ss_pred HHhccHHH-HH-HHHHh--------CCCeEEEEEeCCchHHHHHHHHHhcCCceeeccCCCCCCHHHHHHHC-CCeEEEE
Confidence 44443322 32 23333 78877776 3432220 01 111 1 1233455554 6777888
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEe
Q 015415 232 STPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 232 ~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
.+++|++.++.++++.++|++|-
T Consensus 510 ~~~~~l~~al~~a~~~~~p~lie 532 (558)
T TIGR00118 510 EKPEELDEKLKEALSSNEPVLLD 532 (558)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEE
Confidence 99999999999999989999883
No 155
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=87.67 E-value=3.1 Score=44.92 Aligned_cols=111 Identities=19% Similarity=0.198 Sum_probs=66.1
Q ss_pred CCceEeccc--hhHHHHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCC-
Q 015415 133 DLRVLDTPI--AENSFTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGR- 206 (407)
Q Consensus 133 p~R~i~~GI--aE~~~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~- 206 (407)
|.+|++.+- +=-..++.|.|++++. -++++....- .|++-. ..|- .+... ++|++++. .+|..+
T Consensus 409 p~~~~~~~~~gsmG~~lpaaiGa~la~p~~~Vv~i~GDGsf~m~~-~eL~-Ta~~~--------~lpv~~vV~NN~~~g~ 478 (586)
T PRK06276 409 PRSFISSGGLGTMGFGFPAAIGAKVAKPDANVIAITGDGGFLMNS-QELA-TIAEY--------DIPVVICIFDNRTLGM 478 (586)
T ss_pred CCeEEcCCCccccccchhHHHhhhhhcCCCcEEEEEcchHhhccH-HHHH-HHHHh--------CCCeEEEEEeCCchHH
Confidence 789997642 3334667888888873 3455554342 333333 2232 23333 78877665 333211
Q ss_pred ----------C-CCcCcc-c--hHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 207 ----------Q-LGAEHS-Q--RLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 207 ----------~-~G~tHs-q--~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
. ...++. . .+..+...+ |..-+...+++|+..+++++++.++|.+|-
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe 539 (586)
T PRK06276 479 VYQWQNLYYGKRQSEVHLGETPDFVKLAESY-GVKADRVEKPDEIKEALKEAIKSGEPYLLD 539 (586)
T ss_pred HHHHHHHHhCCCcccccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 111221 1 233455555 677788899999999999999888999884
No 156
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=87.63 E-value=6.2 Score=37.91 Aligned_cols=99 Identities=15% Similarity=0.221 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhc------CCeeEEEecchhHHH--HHHHHHHHhhhhhchhcCCccccc-EEEEecCCCCCCCCcCcc--
Q 015415 145 SFTGMGIGAAMT------GLRPIVEGMNMGFLL--LAFNQISNNCGMLHYTSGGQFTIP-IVIRGPGGVGRQLGAEHS-- 213 (407)
Q Consensus 145 ~~vg~A~GlA~~------G~rp~~~t~~~~f~~--ra~dqi~~~~a~~~~~~gg~~~lp-vvi~~~~G~~~~~G~tHs-- 213 (407)
..+++|+|+|++ ..++++- ..-.-++ ..++.+. .++.. ++| ++++......+..+.++.
T Consensus 109 ~gl~~avG~Ala~~~~~~~~~v~~i-~GDG~~~~G~~~eal~-~a~~~--------~l~~li~vvdnN~~~~~~~~~~~~ 178 (255)
T cd02012 109 QGLSVAVGMALAEKLLGFDYRVYVL-LGDGELQEGSVWEAAS-FAGHY--------KLDNLIAIVDSNRIQIDGPTDDIL 178 (255)
T ss_pred hHHHHHHHHHHHHHHhCCCCEEEEE-ECcccccccHHHHHHH-HHHHc--------CCCcEEEEEECCCccccCcHhhcc
Confidence 455677777776 4455554 3432233 3567664 34443 676 555554322233333321
Q ss_pred --chHHHHHccCCCcEEEeeC--CHHHHHHHHHHHHhc-CCCEEEe
Q 015415 214 --QRLESYFQSIPGIQMVACS--TPYNAKGLMKAAIRS-ENPVILF 254 (407)
Q Consensus 214 --q~~ea~~~~iPgl~V~~P~--d~~e~~~~~~~a~~~-~~Pv~ir 254 (407)
..+..+++++ |+.++... |.+++...++++.+. ++|++|.
T Consensus 179 ~~~~~~~~~~a~-G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~ 223 (255)
T cd02012 179 FTEDLAKKFEAF-GWNVIEVDGHDVEEILAALEEAKKSKGKPTLII 223 (255)
T ss_pred CchhHHHHHHHc-CCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEE
Confidence 1223566666 88888888 999999999999876 7899885
No 157
>PRK08322 acetolactate synthase; Reviewed
Probab=87.37 E-value=6.8 Score=41.79 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=63.6
Q ss_pred CCceEec-cchh-HHHHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCC
Q 015415 133 DLRVLDT-PIAE-NSFTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQ 207 (407)
Q Consensus 133 p~R~i~~-GIaE-~~~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~ 207 (407)
|.+|+.. |..- -..++.|+|++++. -++++....- .|++-..| |-. +... ++|++++. .++..+-
T Consensus 396 ~~~~~~~~~~g~mG~~lpaaiGa~la~p~~~vv~i~GDGsf~m~~~e-L~T-a~~~--------~lpv~iiV~NN~~~g~ 465 (547)
T PRK08322 396 PNTCLLDNALATMGAGLPSAIAAKLVHPDRKVLAVCGDGGFMMNSQE-LET-AVRL--------GLPLVVLILNDNAYGM 465 (547)
T ss_pred CCCEEcCCCcccccchhHHHHHHHHhCCCCcEEEEEcchhHhccHHH-HHH-HHHh--------CCCeEEEEEeCCCcch
Confidence 6777743 3221 22556788888773 3555554443 33333322 322 2222 78877765 3332211
Q ss_pred ------------CCcC-ccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 208 ------------LGAE-HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 208 ------------~G~t-Hsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
.+.. |.-.+..+.+.. |++-+...+++|+...++++++.++|++|-
T Consensus 466 ~~~~~~~~~~~~~~~~~~~~df~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIe 524 (547)
T PRK08322 466 IRWKQENMGFEDFGLDFGNPDFVKYAESY-GAKGYRVESADDLLPTLEEALAQPGVHVID 524 (547)
T ss_pred HHHHHHhhcCCcccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 1111 111233444444 677888999999999999999989999884
No 158
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=86.92 E-value=4.9 Score=41.68 Aligned_cols=111 Identities=18% Similarity=0.162 Sum_probs=63.0
Q ss_pred ceEeccchhHHHHHHHHHHHhc-CCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCC--CCCCcC
Q 015415 135 RVLDTPIAENSFTGMGIGAAMT-GLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVG--RQLGAE 211 (407)
Q Consensus 135 R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~--~~~G~t 211 (407)
+++.+ ..|+++.-||-|.|+. |...++.+.+.....-++.-|.+ |+.. ++||+++...-.. -+.+.
T Consensus 40 ~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~gl~~--A~~~-------~~Pvl~i~g~~~~~~~~~~~- 108 (432)
T TIGR00173 40 RVHVH-IDERSAGFFALGLAKASGRPVAVVCTSGTAVANLLPAVIE--ASYS-------GVPLIVLTADRPPELRGCGA- 108 (432)
T ss_pred EEEEe-cCCccHHHHHHHHHhccCCCEEEEECCcchHhhhhHHHHH--hccc-------CCcEEEEeCCCCHHHhCCCC-
Confidence 78877 5999999999999999 54334333333444445555532 2221 7999988522111 11222
Q ss_pred ccchH--HHHHccCCCcEEEeeCCHHH------HHHHHHHHHh-----cCCCEEEeeccc
Q 015415 212 HSQRL--ESYFQSIPGIQMVACSTPYN------AKGLMKAAIR-----SENPVILFEHVL 258 (407)
Q Consensus 212 Hsq~~--ea~~~~iPgl~V~~P~d~~e------~~~~~~~a~~-----~~~Pv~ir~~r~ 258 (407)
+ |.+ ..+++.+--+..-. .++++ +..+++.|++ .++||+|-.+..
T Consensus 109 ~-q~~d~~~~~~~~tk~~~~v-~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 166 (432)
T TIGR00173 109 N-QTIDQPGLFGSYVRWSLDL-PLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFR 166 (432)
T ss_pred C-cccchhhHHhhccceeeeC-CCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCC
Confidence 2 323 26777665443322 33333 4455555554 358999986653
No 159
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=86.34 E-value=7.2 Score=41.87 Aligned_cols=111 Identities=11% Similarity=0.025 Sum_probs=66.3
Q ss_pred CCceEeccc--hhHHHHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCC
Q 015415 133 DLRVLDTPI--AENSFTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQ 207 (407)
Q Consensus 133 p~R~i~~GI--aE~~~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~ 207 (407)
|.+|+..+- +=-..++.|.|++++. -+++++...- .|++-..| |. .+... ++|++++. .+|..+.
T Consensus 404 ~~~~~~~~~~g~mG~~l~~aiGa~la~p~~~vv~i~GDG~f~m~~~e-L~-Ta~~~--------~lpvi~vV~NN~~~~~ 473 (563)
T PRK08527 404 PRQLATSGGLGTMGYGLPAALGAKLAVPDKVVINFTGDGSILMNIQE-LM-TAVEY--------KIPVINIILNNNFLGM 473 (563)
T ss_pred CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEecCchhcccHHH-HH-HHHHh--------CCCeEEEEEECCcchh
Confidence 788887542 2223666888888885 3555554443 34443333 42 23332 78888665 3332211
Q ss_pred ------------C-CcCcc--chHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 208 ------------L-GAEHS--QRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 208 ------------~-G~tHs--q~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
. +..+. -.+..+.+++ |..-+...+++|+..++++++..++|++|-
T Consensus 474 i~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 534 (563)
T PRK08527 474 VRQWQTFFYEERYSETDLSTQPDFVKLAESF-GGIGFRVTTKEEFDKALKEALESDKVALID 534 (563)
T ss_pred HHHHHHhhcCCceeeccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 11111 1233455555 667788899999999999999989999884
No 160
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=86.25 E-value=9.6 Score=40.74 Aligned_cols=111 Identities=11% Similarity=0.079 Sum_probs=65.6
Q ss_pred CCceEeccch--hHHHHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCC
Q 015415 133 DLRVLDTPIA--ENSFTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQ 207 (407)
Q Consensus 133 p~R~i~~GIa--E~~~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~ 207 (407)
|.+|+..+-- =-..+..|+|++++. -+++++...- .|++-..| |- .+... ++|++++. .++..+.
T Consensus 391 ~~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i~GDG~f~~~~~e-L~-ta~~~--------~l~v~ivV~NN~~~~~ 460 (548)
T PRK08978 391 PENFITSSGLGTMGFGLPAAIGAQVARPDDTVICVSGDGSFMMNVQE-LG-TIKRK--------QLPVKIVLLDNQRLGM 460 (548)
T ss_pred CCeEEeCCchhhhhchHHHHHHHHHhCCCCcEEEEEccchhhccHHH-HH-HHHHh--------CCCeEEEEEeCCccHH
Confidence 7888875421 122366788888774 4666665553 34433333 32 23332 78877765 3322110
Q ss_pred --------CC----cC---ccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 208 --------LG----AE---HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 208 --------~G----~t---Hsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
.+ .+ +.-.+..+.+.+ |+.-+...+++|+...+++++..++|.+|-
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe 521 (548)
T PRK08978 461 VRQWQQLFFDERYSETDLSDNPDFVMLASAF-GIPGQTITRKDQVEAALDTLLNSEGPYLLH 521 (548)
T ss_pred HHHHHHHHhCCcceecCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 01 11 111233455555 777888899999999999999989999884
No 161
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=86.25 E-value=14 Score=33.65 Aligned_cols=145 Identities=12% Similarity=0.065 Sum_probs=74.4
Q ss_pred HHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccc--hhHHHHHHHHHHHhcC-CeeEEEecc-hh
Q 015415 93 LREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPI--AENSFTGMGIGAAMTG-LRPIVEGMN-MG 168 (407)
Q Consensus 93 ~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GI--aE~~~vg~A~GlA~~G-~rp~~~t~~-~~ 168 (407)
+...|.+.+.. +.+++ .|.+... +. ...+.-.. |.+|+..+- +=-..++.|.|++++- -++++.... ..
T Consensus 7 ~~~~l~~~l~~-~~iiv--~d~g~~~--~~-~~~~~~~~-~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG~ 79 (183)
T cd02005 7 LWQQVQNFLKP-NDILV--AETGTSW--FG-ALDLKLPK-GTRFISQPLWGSIGYSVPAALGAALAAPDRRVILLVGDGS 79 (183)
T ss_pred HHHHHHHhcCC-CCEEE--ECCchHH--Hh-hhhccCCC-CCEEEeccchhhHhhhHHHHHHHHHhCCCCeEEEEECCch
Confidence 44555555543 34444 3444321 21 12332333 678887531 1122445677777663 245555444 24
Q ss_pred HHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCC------CCCcCcc----chHHHHHccC---CCcEEEeeCCH
Q 015415 169 FLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGR------QLGAEHS----QRLESYFQSI---PGIQMVACSTP 234 (407)
Q Consensus 169 f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~------~~G~tHs----q~~ea~~~~i---Pgl~V~~P~d~ 234 (407)
|++-..| +.. +... ++|++++. .++..+ ..+..+. -.+..+.... +++..+...++
T Consensus 80 f~~~~~e-l~t-a~~~--------~~p~~ivV~nN~~~~~~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~~~ 149 (183)
T cd02005 80 FQMTVQE-LST-MIRY--------GLNPIIFLINNDGYTIERAIHGPEASYNDIANWNYTKLPEVFGGGGGGLSFRVKTE 149 (183)
T ss_pred hhccHHH-HHH-HHHh--------CCCCEEEEEECCCcEEEEEeccCCcCcccCCCCCHHHHHHHhCCCccccEEEecCH
Confidence 4443333 433 3322 67766665 333211 0111111 1223344433 23667788999
Q ss_pred HHHHHHHHHHHh-cCCCEEEe
Q 015415 235 YNAKGLMKAAIR-SENPVILF 254 (407)
Q Consensus 235 ~e~~~~~~~a~~-~~~Pv~ir 254 (407)
+|+..+++++++ .++|++|-
T Consensus 150 ~el~~al~~a~~~~~~p~lie 170 (183)
T cd02005 150 GELDEALKDALFNRDKLSLIE 170 (183)
T ss_pred HHHHHHHHHHHhcCCCcEEEE
Confidence 999999999998 78999874
No 162
>PRK08266 hypothetical protein; Provisional
Probab=86.03 E-value=6.2 Score=42.08 Aligned_cols=111 Identities=15% Similarity=0.215 Sum_probs=65.5
Q ss_pred CCceEeccc--hhHHHHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCC
Q 015415 133 DLRVLDTPI--AENSFTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQ 207 (407)
Q Consensus 133 p~R~i~~GI--aE~~~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~ 207 (407)
|.+|+..+. +=-..++.|.|++++. -+++++...- .|++ ....|.. +... ++|++++. .++.++.
T Consensus 392 ~~~~~~~~~~GsmG~~lp~aiGa~la~p~~~vv~v~GDG~f~~-~~~eL~t-a~~~--------~lpv~ivv~NN~~y~~ 461 (542)
T PRK08266 392 PRTFVTCGYQGTLGYGFPTALGAKVANPDRPVVSITGDGGFMF-GVQELAT-AVQH--------NIGVVTVVFNNNAYGN 461 (542)
T ss_pred CCcEEeCCCCcccccHHHHHHHHHHhCCCCcEEEEEcchhhhc-cHHHHHH-HHHh--------CCCeEEEEEeCCcchH
Confidence 788887752 1112346788888874 3555554443 3333 3344432 3332 78888765 3332210
Q ss_pred ---------CC----cC-ccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 208 ---------LG----AE-HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 208 ---------~G----~t-Hsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
.+ .. |.-.+..+..++ |+..+...+.+|+...++++++.++|++|-
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 521 (542)
T PRK08266 462 VRRDQKRRFGGRVVASDLVNPDFVKLAESF-GVAAFRVDSPEELRAALEAALAHGGPVLIE 521 (542)
T ss_pred HHHHHHHhcCCCcccCCCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 11 11 111233455555 777888899999999999999888999874
No 163
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=85.84 E-value=5.8 Score=42.83 Aligned_cols=109 Identities=16% Similarity=0.273 Sum_probs=63.0
Q ss_pred CCceEeccchhHHHHH----HHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCC
Q 015415 133 DLRVLDTPIAENSFTG----MGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVG 205 (407)
Q Consensus 133 p~R~i~~GIaE~~~vg----~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~ 205 (407)
|.+|+..+- .+.+| .|.|++++- -++++++..- .|++-+ ..+ ..++.. ++|++++. .++..
T Consensus 398 ~~~~~~s~~--~gsmG~~~paAiGa~la~p~~~vv~i~GDGsf~~~~-~el-~Ta~~~--------~lpv~~vV~NN~~~ 465 (578)
T PRK06546 398 RRRVIGSFR--HGSMANALPHAIGAQLADPGRQVISMSGDGGLSMLL-GEL-LTVKLY--------DLPVKVVVFNNSTL 465 (578)
T ss_pred CceEEccCC--cccccchhHHHHHHHHhCCCCcEEEEEcCchHhhhH-HHH-HHHHHh--------CCCeEEEEEECCcc
Confidence 567876532 34444 788888773 3455554443 444433 334 234443 78887776 33322
Q ss_pred CC-------CC-cCc---cc--hHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 206 RQ-------LG-AEH---SQ--RLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 206 ~~-------~G-~tH---sq--~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
+. .+ ..+ .+ .+..+...+ |+.-+...+++|+..+++++++.++|++|-
T Consensus 466 g~i~~~q~~~~~~~~~~~~~~~df~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lIe 526 (578)
T PRK06546 466 GMVKLEMLVDGLPDFGTDHPPVDYAAIAAAL-GIHAVRVEDPKDVRGALREAFAHPGPALVD 526 (578)
T ss_pred ccHHHHHHhcCCCcccccCCCCCHHHHHHHC-CCeeEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 21 11 111 11 222344444 555677789999999999999999999984
No 164
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=85.63 E-value=8.9 Score=41.48 Aligned_cols=111 Identities=12% Similarity=0.062 Sum_probs=66.7
Q ss_pred CCceEeccc--hhHHHHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCC-
Q 015415 133 DLRVLDTPI--AENSFTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGR- 206 (407)
Q Consensus 133 p~R~i~~GI--aE~~~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~- 206 (407)
|.+|++.+- +=-..++.|+|++++- -|++++...- .|++-+ ..|- .+... ++|+++++ .++..+
T Consensus 427 p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~GDGsf~m~~-~eL~-Ta~r~--------~lpviivV~NN~~~~~ 496 (587)
T PRK06965 427 PRRWINSGGLGTMGVGLPYAMGIKMAHPDDDVVCITGEGSIQMCI-QELS-TCLQY--------DTPVKIISLNNRYLGM 496 (587)
T ss_pred CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchhhhcCH-HHHH-HHHHc--------CCCeEEEEEECCcchH
Confidence 789997643 4445577789988884 3555554443 343333 2232 23332 78887776 333221
Q ss_pred --------CCCc---C---ccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhc-CCCEEEe
Q 015415 207 --------QLGA---E---HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRS-ENPVILF 254 (407)
Q Consensus 207 --------~~G~---t---Hsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~-~~Pv~ir 254 (407)
..+. + +.-.+..+-+++ |+.-+...+.+|+..+++.|++. ++|++|-
T Consensus 497 i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~-G~~~~~v~~~~eL~~al~~a~~~~~~p~lie 558 (587)
T PRK06965 497 VRQWQEIEYSKRYSHSYMDALPDFVKLAEAY-GHVGMRIEKTSDVEPALREALRLKDRTVFLD 558 (587)
T ss_pred HHHHHHHhcCCCccccCCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhcCCCcEEEE
Confidence 0111 1 111233444444 67788899999999999999984 7899884
No 165
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=85.16 E-value=3.8 Score=40.28 Aligned_cols=146 Identities=12% Similarity=-0.008 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcC-CeeEEEecc
Q 015415 88 LLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTG-LRPIVEGMN 166 (407)
Q Consensus 88 ~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G-~rp~~~t~~ 166 (407)
..-.++.++|.++--..++.+++ .|+|.++- ...+.+ +..+.-+ =-..+.+|.|++++. -+++++...
T Consensus 18 ~i~~~~~~a~~~l~~~p~d~ivv-sdiG~~~~----~~~~~~---~~~~~~~---mG~alp~AiGaklA~pd~~VVai~G 86 (280)
T PRK11869 18 GIRNALMKALSELNLKPRQVVIV-SGIGQAAK----MPHYIN---VNGFHTL---HGRAIPAATAVKATNPELTVIAEGG 86 (280)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEE-eCchHhhh----HHHHcc---CCCCCcc---cccHHHHHHHHHHHCCCCcEEEEEC
Confidence 35678888887764444455444 45553211 111111 1111111 123567788888875 367777444
Q ss_pred hhHHH--HHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCC----CC------Cc-C----c---cc--hHHHHHc--
Q 015415 167 MGFLL--LAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGR----QL------GA-E----H---SQ--RLESYFQ-- 221 (407)
Q Consensus 167 ~~f~~--ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~----~~------G~-t----H---sq--~~ea~~~-- 221 (407)
+.-. -.+..|.+ ++.. ++|+++++ .++.+| +. |. + + .. ++..+..
T Consensus 87 -DG~~~~iG~~eL~t-A~r~--------nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~ 156 (280)
T PRK11869 87 -DGDMYAEGGNHLIH-AIRR--------NPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIAL 156 (280)
T ss_pred -chHHhhCcHHHHHH-HHHh--------CcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHHC
Confidence 3332 22566654 4443 78887776 332211 11 00 0 0 01 1122332
Q ss_pred cCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 222 SIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 222 ~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
..+.+....+.++.|+..++++|++.++|++|-
T Consensus 157 G~~~va~~~~~~~~~l~~~i~~Al~~~Gp~lIe 189 (280)
T PRK11869 157 DASFVARTFSGDIEETKEILKEAIKHKGLAIVD 189 (280)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 334333334999999999999999999999984
No 166
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=84.53 E-value=10 Score=41.24 Aligned_cols=114 Identities=16% Similarity=0.188 Sum_probs=66.0
Q ss_pred CCceEeccchhHHHHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCCCC
Q 015415 133 DLRVLDTPIAENSFTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQLG 209 (407)
Q Consensus 133 p~R~i~~GIaE~~~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~~G 209 (407)
|.+++++-.+=-..++.|.|++++. -+++++...- .|++-.+..|.+ +... ++|++++. .++.++..+
T Consensus 395 p~~~~~~~~~mG~~~~~AiGa~~a~p~~~Vv~i~GDG~f~~~g~~eL~t-av~~--------~~~i~~vVlnN~~~g~~~ 465 (595)
T TIGR03336 395 PLGTVDTTLCMGASIGVASGLSKAGEKQRIVAFIGDSTFFHTGIPGLIN-AVYN--------KANITVVILDNRITAMTG 465 (595)
T ss_pred CccccceeeccCchHHHHhhhhhcCCCCCEEEEeccchhhhcCHHHHHH-HHHc--------CCCeEEEEEcCcceeccC
Confidence 5566665333333445677777663 4677775553 333332455544 3332 67877665 333222111
Q ss_pred -----cC---------ccchHHHHHc--cCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEee
Q 015415 210 -----AE---------HSQRLESYFQ--SIPGIQMVACSTPYNAKGLMKAAIRSENPVILFE 255 (407)
Q Consensus 210 -----~t---------Hsq~~ea~~~--~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir~ 255 (407)
.+ +.-+++.+.+ +.+...|..|.+-+|+..++++++..++|.+|..
T Consensus 466 ~q~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~~a~~~~gp~li~v 527 (595)
T TIGR03336 466 HQPNPGTGVTGMGEATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAALAAEGVSVIIA 527 (595)
T ss_pred CCCCCCCCCCCCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 00 1112433333 4567788888888999999999999999998853
No 167
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=84.32 E-value=4.2 Score=37.92 Aligned_cols=88 Identities=11% Similarity=0.055 Sum_probs=54.9
Q ss_pred CCcEEEEEech-hHHHHHHHHHHHhhC--CCCceEEEeccccc----------CchhhHHHHHhcCCcEEEEecCccccc
Q 015415 284 GEHVTILTYSR-MRYHVMQAAKTLVNK--GYDPEVIDIRSLKP----------FDLYTIGNSIKKTHRVLIVEECMRTGG 350 (407)
Q Consensus 284 G~dv~Iia~G~-~~~~al~Aa~~L~~~--Gi~v~VI~~~~l~P----------fd~~~l~~~~~~~~~vvvvEe~~~~GG 350 (407)
..|+++.++|. .+.+++.|++.|++. +++++|||+--|-- ++.+...++.-+.+.|+.- .-|
T Consensus 34 ePDVVlA~aGd~pT~E~lAA~~lLr~~~P~lkiRvVNVvDLm~L~~~~~hPhglsd~~Fd~lFT~DkPViFa-----fHG 108 (203)
T PF09363_consen 34 EPDVVLACAGDVPTLEVLAAASLLREHFPELKIRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTKDKPVIFA-----FHG 108 (203)
T ss_dssp T-SEEEEEESHHHHHHHHHHHHHHHHT--T--EEEEEESBGGGGS-TTT-TTS--HHHHHHHH-SSS-EEEE-----ESS
T ss_pred CCCEEEEecCchhhHHHHHHHHHHHHhccCceEEEEEEeEccccCCCCCCCCcCCHHHHHHhcCCCCCEEEE-----cCC
Confidence 37999999996 568999999999998 99998888766622 5556677777666666643 235
Q ss_pred hHHHHHHHHHhccccCCCCCeEEeecCCC
Q 015415 351 IGASLTAAITENFHDYLDAPIVCLSSQDV 379 (407)
Q Consensus 351 lGs~I~~~l~e~~~~~~~~~v~~ig~~d~ 379 (407)
.-..|-..+..+. ...++...|-.+.
T Consensus 109 Yp~~i~~L~~~R~---n~~~~hV~GY~Ee 134 (203)
T PF09363_consen 109 YPWLIHRLLFGRP---NHDRFHVHGYREE 134 (203)
T ss_dssp EHHHHHHHTTTST---TGGGEEEEEE-S-
T ss_pred CHHHHHHHhcCCC---CCCCeEEEeeccC
Confidence 5666777666542 1134555665554
No 168
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=84.25 E-value=4.7 Score=40.02 Aligned_cols=142 Identities=14% Similarity=0.070 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccch---hHHHHHHHHHHHhcC-CeeEEEe
Q 015415 89 LFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIA---ENSFTGMGIGAAMTG-LRPIVEG 164 (407)
Q Consensus 89 ~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIa---E~~~vg~A~GlA~~G-~rp~~~t 164 (407)
.-.++.++|.++--..+++++ ..|+|.+. +. | +|+++.-- =-..+.+|.|++++. -+++++.
T Consensus 29 i~~~i~~al~~l~l~p~d~vi-vsdiG~s~-----------~~-~-~yl~~~~~~g~mG~alpaAiGaklA~pd~~VV~i 94 (301)
T PRK05778 29 ILNAIIQALAELGLDPDKVVV-VSGIGCSS-----------KI-P-GYFLSHGLHTLHGRAIAFATGAKLANPDLEVIVV 94 (301)
T ss_pred HHHHHHHHHHHhcCCCCCEEE-EeCCcHhh-----------hh-h-hhcccCccchhhccHHHHHHHHHHHCCCCcEEEE
Confidence 556677777766322334444 34666321 11 2 13332210 023456788887773 4566664
Q ss_pred cchh-HHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCCCCc----C----------c------cchHHHHHcc
Q 015415 165 MNMG-FLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQLGA----E----------H------SQRLESYFQS 222 (407)
Q Consensus 165 ~~~~-f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~~G~----t----------H------sq~~ea~~~~ 222 (407)
..-. |..-....+.+ ++.. ++|+++++ .++.+|..+. + . .-.+..+..+
T Consensus 95 ~GDG~~~~mg~~eL~t-A~r~--------nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~~~~~d~~~lA~a 165 (301)
T PRK05778 95 GGDGDLASIGGGHFIH-AGRR--------NIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNIEPPIDPCALALA 165 (301)
T ss_pred eCccHHHhccHHHHHH-HHHH--------CCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCCcCCCCCHHHHHHH
Confidence 4422 33344455544 4443 78888776 3332211110 0 0 0112233333
Q ss_pred CCCcEEE---eeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 223 IPGIQMV---ACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 223 iPgl~V~---~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
. |...+ ...+++|+..++++|+..++|++|-
T Consensus 166 ~-G~~~va~~~v~~~~eL~~ai~~A~~~~GpalIe 199 (301)
T PRK05778 166 A-GATFVARSFAGDVKQLVELIKKAISHKGFAFID 199 (301)
T ss_pred C-CCCEEEEeccCCHHHHHHHHHHHHhCCCCEEEE
Confidence 3 44443 6899999999999999999999884
No 169
>PRK06154 hypothetical protein; Provisional
Probab=84.10 E-value=19 Score=38.82 Aligned_cols=112 Identities=13% Similarity=-0.017 Sum_probs=65.3
Q ss_pred CCceEeccc--hhHHHHHHHHHHHhcC-CeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCCC
Q 015415 133 DLRVLDTPI--AENSFTGMGIGAAMTG-LRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQL 208 (407)
Q Consensus 133 p~R~i~~GI--aE~~~vg~A~GlA~~G-~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~~ 208 (407)
|.+|+..+- +=-..++.|+|++++- -|++++...-.-++.....|- .+... ++|+++++ .++..+..
T Consensus 421 p~~~~~~~~~gsmG~glpaaiGa~la~p~r~Vv~i~GDG~f~m~~~EL~-Ta~r~--------~lpi~~vV~NN~~yg~~ 491 (565)
T PRK06154 421 PGSYLGWGKTTQLGYGLGLAMGAKLARPDALVINLWGDAAFGMTGMDFE-TAVRE--------RIPILTILLNNFSMGGY 491 (565)
T ss_pred CCeEEccCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhccHHHHH-HHHHh--------CCCeEEEEEECCcccee
Confidence 789997642 1223566777777773 366666545332333333332 23332 88988776 33322210
Q ss_pred -------Cc----C-ccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh---cCCCEEEe
Q 015415 209 -------GA----E-HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIR---SENPVILF 254 (407)
Q Consensus 209 -------G~----t-Hsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~---~~~Pv~ir 254 (407)
+. + +.-.+.++..++ |+.-+.-.+++|+..+++.|+. .++|++|-
T Consensus 492 ~~~~~~~~~~~~~~~~~~df~~lA~a~-G~~g~~V~~~~el~~al~~a~~~~~~~~p~lIe 551 (565)
T PRK06154 492 DKVMPVSTTKYRATDISGDYAAIARAL-GGYGERVEDPEMLVPALLRALRKVKEGTPALLE 551 (565)
T ss_pred ehhhhhhcCcccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhhccCCCeEEEE
Confidence 11 1 111233455555 6778888999999999999986 57799884
No 170
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=84.09 E-value=9.7 Score=41.31 Aligned_cols=111 Identities=12% Similarity=0.099 Sum_probs=67.0
Q ss_pred CCceEeccc--hhHHHHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCC
Q 015415 133 DLRVLDTPI--AENSFTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQ 207 (407)
Q Consensus 133 p~R~i~~GI--aE~~~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~ 207 (407)
|.+|+..+- +=-..+..|+|++++. -|+++++..- .|++-+.| |- -+... ++|+++++ .+|..+-
T Consensus 420 p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~GDG~f~m~~~E-L~-Ta~r~--------~lpvi~vV~NN~~y~~ 489 (595)
T PRK09107 420 PNRWMTSGGLGTMGYGLPAALGVQIAHPDALVIDIAGDASIQMCIQE-MS-TAVQY--------NLPVKIFILNNQYMGM 489 (595)
T ss_pred CCeEEcCCCchhhhhhHHHHHHHHHhCCCCeEEEEEcCchhhccHHH-HH-HHHHh--------CCCeEEEEEeCCccHH
Confidence 788997541 1123566777888774 3666665453 34443333 32 23332 78887776 3332210
Q ss_pred --------CC----cCc---cchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 208 --------LG----AEH---SQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 208 --------~G----~tH---sq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
.| ..+ .-.+..+.+.+ |+.-+...+++|+..++++++..++|.+|-
T Consensus 490 i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe 550 (595)
T PRK09107 490 VRQWQQLLHGNRLSHSYTEAMPDFVKLAEAY-GAVGIRCEKPGDLDDAIQEMIDVDKPVIFD 550 (595)
T ss_pred HHHHHHHHhCCccccccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 11 111 11233455555 777788899999999999999999999984
No 171
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=83.75 E-value=18 Score=38.86 Aligned_cols=111 Identities=18% Similarity=0.207 Sum_probs=64.5
Q ss_pred CCceEeccc-h-hHHHHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCC
Q 015415 133 DLRVLDTPI-A-ENSFTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQ 207 (407)
Q Consensus 133 p~R~i~~GI-a-E~~~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~ 207 (407)
|.+|+..+- . =-..++.|+|++++. -+++++...- .|++-. ..|-. +... ++|++++. .++..+-
T Consensus 398 ~~~~~~~~~~G~mG~~lpaAiGa~la~p~r~vv~i~GDGsf~m~~-~eL~T-a~~~--------~lpv~ivV~NN~~~g~ 467 (574)
T PRK09124 398 KRRLLGSFNHGSMANAMPQALGAQAAHPGRQVVALSGDGGFSMLM-GDFLS-LVQL--------KLPVKIVVFNNSVLGF 467 (574)
T ss_pred CCeEEecCCcccccchHHHHHHHHHhCCCCeEEEEecCcHHhccH-HHHHH-HHHh--------CCCeEEEEEeCCcccc
Confidence 678886421 1 123677888888774 3566665453 333333 33432 3322 78877665 3322111
Q ss_pred -------CCc----C--ccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 208 -------LGA----E--HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 208 -------~G~----t--Hsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
.+. + +.-.+..+...+ |+.-+...+++|+...++++++.++|++|-
T Consensus 468 i~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIe 526 (574)
T PRK09124 468 VAMEMKAGGYLTDGTDLHNPDFAAIAEAC-GITGIRVEKASELDGALQRAFAHDGPALVD 526 (574)
T ss_pred HHHHHHhcCCccccCcCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 111 1 111233344444 677788899999999999999989999884
No 172
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=83.66 E-value=13 Score=39.63 Aligned_cols=112 Identities=18% Similarity=0.183 Sum_probs=65.8
Q ss_pred CCCceEecc-ch-hHHHHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCC
Q 015415 132 GDLRVLDTP-IA-ENSFTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGR 206 (407)
Q Consensus 132 gp~R~i~~G-Ia-E~~~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~ 206 (407)
.|.+|+..+ .. =-..+..|.|++++. -+++++...- .|.+-+-| |- .+... ++|++++. .++..+
T Consensus 397 ~~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~GDGsf~m~~~e-L~-Ta~~~--------~lpi~ivV~NN~~y~ 466 (539)
T TIGR02418 397 RARHLLISNGMQTLGVALPWAIGAALVRPNTKVVSVSGDGGFLFSSME-LE-TAVRL--------KLNIVHIIWNDNGYN 466 (539)
T ss_pred CCCceecCCCccccccHHHHHHHHHHhCCCCcEEEEEcchhhhchHHH-HH-HHHHh--------CCCeEEEEEECCcch
Confidence 378887543 11 123555788888773 3556655453 34443333 43 23332 78887775 333221
Q ss_pred C--------CC---cC--ccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 207 Q--------LG---AE--HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 207 ~--------~G---~t--Hsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
. .+ .+ +.-.+..+.+.+ |+.-....+++|+...+++|+..++|.+|-
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~p~lIe 526 (539)
T TIGR02418 467 MVEFQEEMKYQRSSGVDFGPIDFVKYAESF-GAKGLRVESPDQLEPTLRQAMEVEGPVVVD 526 (539)
T ss_pred HHHHHHHHhcCCcccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 1 01 01 111233455555 677889999999999999999989999984
No 173
>PRK05858 hypothetical protein; Provisional
Probab=83.48 E-value=11 Score=40.21 Aligned_cols=111 Identities=15% Similarity=0.108 Sum_probs=64.6
Q ss_pred CCceEeccc--hhHHHHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCC
Q 015415 133 DLRVLDTPI--AENSFTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQ 207 (407)
Q Consensus 133 p~R~i~~GI--aE~~~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~ 207 (407)
|.+|+..+. +=-..++.|+|++++- -|++++...- .|++-. ..|.. +... ++|++++. .++..+-
T Consensus 397 p~~~~~~~~~gsmG~~lp~aiGa~la~p~r~vv~i~GDG~f~~~~-~eL~T-a~~~--------~lpi~ivV~NN~~y~~ 466 (542)
T PRK05858 397 PGCWLDPGPFGCLGTGPGYALAARLARPSRQVVLLQGDGAFGFSL-MDVDT-LVRH--------NLPVVSVIGNNGIWGL 466 (542)
T ss_pred CCCEEeCCCccccccchhHHHHHHHhCCCCcEEEEEcCchhcCcH-HHHHH-HHHc--------CCCEEEEEEeCCchhh
Confidence 788987753 2223456666766662 3566654443 333333 33322 3322 78877765 4433221
Q ss_pred --------CCc-----C-ccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 208 --------LGA-----E-HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 208 --------~G~-----t-Hsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
.|. . +.-.+..+.+.+ |..-....+++|+..+++++++.++|++|-
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIe 526 (542)
T PRK05858 467 EKHPMEALYGYDVAADLRPGTRYDEVVRAL-GGHGELVTVPAELGPALERAFASGVPYLVN 526 (542)
T ss_pred HHHHHHHhcCCccccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 010 0 011222344444 667889999999999999999999999985
No 174
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=82.74 E-value=8 Score=38.81 Aligned_cols=108 Identities=16% Similarity=0.218 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHhc--CCeeEEEecchhHH---HHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCCcCcc---c
Q 015415 143 ENSFTGMGIGAAMT--GLRPIVEGMNMGFL---LLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHS---Q 214 (407)
Q Consensus 143 E~~~vg~A~GlA~~--G~rp~~~t~~~~f~---~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G~tHs---q 214 (407)
+|-=+|..+++|.. +-.-++.++|.+.. -..||.+ |.++++ ++|+|+++-+-.+ +.|.+|. -
T Consensus 169 AQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~-NMA~LW--------~LP~IFvCENN~y-GMGTs~~Rasa 238 (394)
T KOG0225|consen 169 AQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAF-NMAALW--------KLPVIFVCENNHY-GMGTSAERASA 238 (394)
T ss_pred cCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHh-hHHHHh--------CCCEEEEEccCCC-ccCcchhhhhc
Confidence 33334444455544 55666666776654 2566766 445554 9999999843222 4455552 1
Q ss_pred hHHHHHcc--CCCcEEEeeCCHHHHHHHHHHHHh----cCCCEEEeecccccc
Q 015415 215 RLESYFQS--IPGIQMVACSTPYNAKGLMKAAIR----SENPVILFEHVLLYN 261 (407)
Q Consensus 215 ~~ea~~~~--iPgl~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~~r~~y~ 261 (407)
+.|-+.|. |||++| .--|.--++.+.++|.+ .++|+++-...-.|.
T Consensus 239 ~teyykRG~yiPGl~V-dGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy~ 290 (394)
T KOG0225|consen 239 STEYYKRGDYIPGLKV-DGMDVLAVREATKFAKKYALEGKGPILMEMDTYRYH 290 (394)
T ss_pred ChHHHhccCCCCceEE-CCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeeeec
Confidence 22334443 898854 44455555556666654 478999865554443
No 175
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=82.36 E-value=16 Score=39.29 Aligned_cols=145 Identities=13% Similarity=0.095 Sum_probs=78.6
Q ss_pred HHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccc-h-hHHHHHHHHHHHhcC-CeeEEEecch-h
Q 015415 93 LREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPI-A-ENSFTGMGIGAAMTG-LRPIVEGMNM-G 168 (407)
Q Consensus 93 ~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GI-a-E~~~vg~A~GlA~~G-~rp~~~t~~~-~ 168 (407)
+...|.+++. ++.+ +..|.+... .|. ...+.-.. |.+|++.+- . --..++.|+|++++. -++++....- .
T Consensus 377 ~~~~l~~~l~--~~~i-i~~d~g~~~-~~~-~~~~~~~~-p~~~~~~~~~g~mG~~lp~aiGa~la~p~~~vv~i~GDG~ 450 (574)
T PRK06882 377 VVEAIYRLTN--GDAY-VASDVGQHQ-MFA-ALHYPFDK-PRRWINSGGAGTMGFGLPAAIGVKFAHPEATVVCVTGDGS 450 (574)
T ss_pred HHHHHHhhcC--CCeE-EEecCchhH-HHH-HHhccccC-CCcEEeCCCcccccchhHHHHHHHhhcCCCcEEEEEcchh
Confidence 5555555542 3433 345555311 111 12222334 789998642 3 233577788988874 2444544443 3
Q ss_pred HHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCC---------CCC---cC---ccchHHHHHccCCCcEEEeeC
Q 015415 169 FLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGR---------QLG---AE---HSQRLESYFQSIPGIQMVACS 232 (407)
Q Consensus 169 f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~---------~~G---~t---Hsq~~ea~~~~iPgl~V~~P~ 232 (407)
|++ ....|-. ++.. ++|++++. .++..+ ..+ .. +...+..+.+++ |+.-+...
T Consensus 451 f~~-~~~eL~t-a~~~--------~lpv~~vV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~ 519 (574)
T PRK06882 451 IQM-NIQELST-AKQY--------DIPVVIVSLNNRFLGMVKQWQDLIYSGRHSQVYMNSLPDFAKLAEAY-GHVGIQID 519 (574)
T ss_pred hhc-cHHHHHH-HHHh--------CCCeEEEEEECchhHHHHHHHHHhcCCcccccCCCCCCCHHHHHHHC-CCeEEEeC
Confidence 433 3344432 3433 78887776 333221 011 11 111233444444 66777889
Q ss_pred CHHHHHHHHHHHHhc-CCCEEEe
Q 015415 233 TPYNAKGLMKAAIRS-ENPVILF 254 (407)
Q Consensus 233 d~~e~~~~~~~a~~~-~~Pv~ir 254 (407)
+.+|+..++.++++. ++|++|-
T Consensus 520 ~~~eL~~al~~a~~~~~~p~lie 542 (574)
T PRK06882 520 TPDELEEKLTQAFSIKDKLVFVD 542 (574)
T ss_pred CHHHHHHHHHHHHhcCCCcEEEE
Confidence 999999999999986 7898874
No 176
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=82.35 E-value=8.3 Score=41.94 Aligned_cols=111 Identities=13% Similarity=0.147 Sum_probs=65.8
Q ss_pred CCceEeccc-hhH-HHHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCC
Q 015415 133 DLRVLDTPI-AEN-SFTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQ 207 (407)
Q Consensus 133 p~R~i~~GI-aE~-~~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~ 207 (407)
|.+|++.+- .-. ..++.|+|++++. -|++++...- .|++-. ..|- .+... ++|++++. .++..+.
T Consensus 437 p~~~~~~~~~G~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~-~eL~-Ta~~~--------~lpv~ivV~NN~~~g~ 506 (612)
T PRK07789 437 PRTWLNSGGLGTMGYAVPAAMGAKVGRPDKEVWAIDGDGCFQMTN-QELA-TCAIE--------GIPIKVALINNGNLGM 506 (612)
T ss_pred CCeEEcCCCcccccchhhhHHhhhccCCCCcEEEEEcchhhhccH-HHHH-HHHHc--------CCCeEEEEEECCchHH
Confidence 789997753 333 3578888888884 4666664443 333322 2232 23322 67877665 3332210
Q ss_pred ---------C---CcC-----ccc--hHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhc-CCCEEEe
Q 015415 208 ---------L---GAE-----HSQ--RLESYFQSIPGIQMVACSTPYNAKGLMKAAIRS-ENPVILF 254 (407)
Q Consensus 208 ---------~---G~t-----Hsq--~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~-~~Pv~ir 254 (407)
. ..+ |.. .+..+.+++ |+.-+...+.+|+..+++.++.. ++|++|-
T Consensus 507 i~~~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~~p~lIe 572 (612)
T PRK07789 507 VRQWQTLFYEERYSNTDLHTHSHRIPDFVKLAEAY-GCVGLRCEREEDVDAVIEKARAINDRPVVID 572 (612)
T ss_pred HHHHHHHhhCCCcceeecCcCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCcEEEE
Confidence 0 011 111 233455555 67777889999999999999985 8999884
No 177
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=82.12 E-value=21 Score=38.37 Aligned_cols=111 Identities=11% Similarity=0.057 Sum_probs=64.0
Q ss_pred CCceEeccc--hhHHHHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCC
Q 015415 133 DLRVLDTPI--AENSFTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQ 207 (407)
Q Consensus 133 p~R~i~~GI--aE~~~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~ 207 (407)
|.+|++.+- +=-..+..|+|++++- -|++++...- .|++-+ ..|- .+... ++|++++. .++.++.
T Consensus 413 p~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i~GDG~f~m~~-~eL~-Ta~r~--------~lpv~ivV~NN~~y~~ 482 (574)
T PRK06466 413 PNRWINSGGLGTMGFGLPAAMGVKLAFPDQDVACVTGEGSIQMNI-QELS-TCLQY--------GLPVKIINLNNGALGM 482 (574)
T ss_pred CCcEEcCCCcchhhchHHHHHHHHHhCCCCeEEEEEcchhhhccH-HHHH-HHHHh--------CCCeEEEEEeCCccHH
Confidence 788887641 1122355688888773 3566654443 343333 3332 23332 78887776 3332110
Q ss_pred ---------CC---cC---ccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhc-CCCEEEe
Q 015415 208 ---------LG---AE---HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRS-ENPVILF 254 (407)
Q Consensus 208 ---------~G---~t---Hsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~-~~Pv~ir 254 (407)
.+ .+ +.-.+..+..++ |..-+...+++|+..+++++++. ++|++|-
T Consensus 483 i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~p~lIe 544 (574)
T PRK06466 483 VRQWQDMQYEGRHSHSYMESLPDFVKLAEAY-GHVGIRITDLKDLKPKLEEAFAMKDRLVFID 544 (574)
T ss_pred HHHHHHHhcCCceeecCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCcEEEE
Confidence 11 11 111233444444 67778889999999999999986 8999874
No 178
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=82.00 E-value=12 Score=40.20 Aligned_cols=111 Identities=14% Similarity=0.096 Sum_probs=61.9
Q ss_pred CCceEeccc-hhHHHHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCC-
Q 015415 133 DLRVLDTPI-AENSFTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQ- 207 (407)
Q Consensus 133 p~R~i~~GI-aE~~~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~- 207 (407)
|.+++..+- +=-..++.|.|++++. -+++++...- .|++ ....|- .+... ++|++++. .++..+.
T Consensus 406 ~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDGsf~~-~~~el~-ta~~~--------~l~i~~vv~nN~~~~~~ 475 (557)
T PRK08199 406 YRTQLAPTSGSMGYGLPAAIAAKLLFPERTVVAFAGDGCFLM-NGQELA-TAVQY--------GLPIIVIVVNNGMYGTI 475 (557)
T ss_pred CCeEECCCCccccchHHHHHHHHHhCCCCcEEEEEcchHhhc-cHHHHH-HHHHh--------CCCeEEEEEeCCcchHH
Confidence 566665432 1111344577777774 3555554443 3333 333342 23333 78888776 4442220
Q ss_pred --------CCc---Cc--cchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 208 --------LGA---EH--SQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 208 --------~G~---tH--sq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
.+. +. .-.+..+.+++ |+.-....+++|+...+++++..++|++|.
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~gp~li~ 534 (557)
T PRK08199 476 RMHQEREYPGRVSGTDLTNPDFAALARAY-GGHGETVERTEDFAPAFERALASGKPALIE 534 (557)
T ss_pred HHHHHHhcCCccccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 010 11 01223444544 677778889999999999999889999884
No 179
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=81.85 E-value=16 Score=39.31 Aligned_cols=111 Identities=16% Similarity=0.128 Sum_probs=65.1
Q ss_pred CCceEeccc-hh-HHHHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCC
Q 015415 133 DLRVLDTPI-AE-NSFTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQ 207 (407)
Q Consensus 133 p~R~i~~GI-aE-~~~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~ 207 (407)
|.+|+..+- .= -..++.|.|++++. -++++....- .|++-+.| |- .+... ++|+++++ .++..+.
T Consensus 414 ~~~~~~~~~~g~mG~glpaAiGaala~p~~~vv~i~GDGsf~m~~~e-L~-ta~r~--------~lpi~ivV~NN~~~~~ 483 (571)
T PRK07710 414 PDKWVTSGGLGTMGFGLPAAIGAQLAKPDETVVAIVGDGGFQMTLQE-LS-VIKEL--------SLPVKVVILNNEALGM 483 (571)
T ss_pred CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchHHhhhHHH-HH-HHHHh--------CCCeEEEEEECchHHH
Confidence 778886642 11 12666788888774 2455554443 34443333 32 23332 78877665 3332110
Q ss_pred ---------CCc---C---ccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 208 ---------LGA---E---HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 208 ---------~G~---t---Hsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
.+. . ..-.+..+.+.+ |+.-+...+.+|+..+++++++.++|++|-
T Consensus 484 i~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 544 (571)
T PRK07710 484 VRQWQEEFYNQRYSHSLLSCQPDFVKLAEAY-GIKGVRIDDELEAKEQLQHAIELQEPVVID 544 (571)
T ss_pred HHHHHHHHhCCcceeccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 010 0 111233444444 778888999999999999999989999884
No 180
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=81.13 E-value=21 Score=37.95 Aligned_cols=111 Identities=11% Similarity=0.122 Sum_probs=63.7
Q ss_pred CCceEeccc-hhHHHHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCC-
Q 015415 133 DLRVLDTPI-AENSFTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQ- 207 (407)
Q Consensus 133 p~R~i~~GI-aE~~~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~- 207 (407)
|.+|+.... +=-..++.|.|++++. -+++++...- .|++ ....|. .++.. ++|++++. .+|.++.
T Consensus 398 ~~~~~~~~~g~mG~~lp~aiGa~la~p~~~vv~i~GDG~f~~-~~~eL~-ta~~~--------~lp~~~vv~NN~~~~~~ 467 (530)
T PRK07092 398 QGSFYTMASGGLGYGLPAAVGVALAQPGRRVIGLIGDGSAMY-SIQALW-SAAQL--------KLPVTFVILNNGRYGAL 467 (530)
T ss_pred CCceEccCCCcccchHHHHHHHHHhCCCCeEEEEEeCchHhh-hHHHHH-HHHHh--------CCCcEEEEEeChHHHHH
Confidence 678886421 1123556788888773 2444444443 3333 333342 23332 78887665 3432211
Q ss_pred --------CC-cC----ccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 208 --------LG-AE----HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 208 --------~G-~t----Hsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
.+ .. +.-.+..+.+.+ |+..+...+..|+..+++.+.+.++|++|-
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~d~~~~a~~~-G~~~~~v~~~~~l~~al~~a~~~~~p~lie 526 (530)
T PRK07092 468 RWFAPVFGVRDVPGLDLPGLDFVALARGY-GCEAVRVSDAAELADALARALAADGPVLVE 526 (530)
T ss_pred HHHHHhhCCCCCCCCCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 01 11 111233444544 777888889999999999999889999884
No 181
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=81.06 E-value=14 Score=39.82 Aligned_cols=146 Identities=15% Similarity=0.233 Sum_probs=80.2
Q ss_pred HHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhh-hhCCCceEeccc-hh-HHHHHHHHHHHhcCCeeEEEecch-h
Q 015415 93 LREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLAD-KYGDLRVLDTPI-AE-NSFTGMGIGAAMTGLRPIVEGMNM-G 168 (407)
Q Consensus 93 ~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~-~fgp~R~i~~GI-aE-~~~vg~A~GlA~~G~rp~~~t~~~-~ 168 (407)
+...|.+.+...++.+++. |.+. .......+.+ .. |.++++.+- .= -..++.|+|++++--++++....- .
T Consensus 378 ~~~~l~~~l~~~~d~iv~~-~~~~---~~~~~~~~~~~~~-p~~~~~~~~~gsmG~glpaaiGa~la~~~~vv~i~GDG~ 452 (569)
T PRK09259 378 ALGAIRDVLKENPDIYLVN-EGAN---TLDLARNIIDMYK-PRHRLDCGTWGVMGIGMGYAIAAAVETGKPVVAIEGDSA 452 (569)
T ss_pred HHHHHHHHhCCCCCEEEEe-CchH---HHHHHHHhcccCC-CCceEeCCCCccccccHHHHHHHHhcCCCcEEEEecCcc
Confidence 4556766665445666544 3321 1111112222 33 788887652 11 125567888888754666665453 3
Q ss_pred HHHHHHHHHHHhhhhhchhcCCcccccEEEEe-c-CCCC-C------C-CCc--C-c--cchHHHHHccCCCcEEEeeCC
Q 015415 169 FLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-P-GGVG-R------Q-LGA--E-H--SQRLESYFQSIPGIQMVACST 233 (407)
Q Consensus 169 f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~-~G~~-~------~-~G~--t-H--sq~~ea~~~~iPgl~V~~P~d 233 (407)
|++-..| |. .+... ++|++++. . +|.. + . ... + . .-.+..+..++ |+.-+...+
T Consensus 453 f~m~~~E-L~-Ta~r~--------~lpi~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~ 521 (569)
T PRK09259 453 FGFSGME-VE-TICRY--------NLPVTVVIFNNGGIYRGDDVNLSGAGDPSPTVLVHHARYDKMMEAF-GGVGYNVTT 521 (569)
T ss_pred ccccHHH-HH-HHHHc--------CCCEEEEEEeChhHHHHHHHHhhcCCCccccccCCCCCHHHHHHHC-CCeEEEECC
Confidence 3333333 42 23332 78887776 3 3321 0 0 011 1 1 11233444444 666778899
Q ss_pred HHHHHHHHHHHHhcCCCEEEe
Q 015415 234 PYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 234 ~~e~~~~~~~a~~~~~Pv~ir 254 (407)
++|+...+++++..++|++|-
T Consensus 522 ~~el~~al~~a~~~~~p~lIe 542 (569)
T PRK09259 522 PDELRHALTEAIASGKPTLIN 542 (569)
T ss_pred HHHHHHHHHHHHhCCCCEEEE
Confidence 999999999999999999884
No 182
>PRK05899 transketolase; Reviewed
Probab=81.03 E-value=8.3 Score=42.12 Aligned_cols=101 Identities=12% Similarity=0.160 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhcC---------------CeeEEEecchhHHH--HHHHHHHHhhhhhchhcCCccccc-EEEEec-CCCC
Q 015415 145 SFTGMGIGAAMTG---------------LRPIVEGMNMGFLL--LAFNQISNNCGMLHYTSGGQFTIP-IVIRGP-GGVG 205 (407)
Q Consensus 145 ~~vg~A~GlA~~G---------------~rp~~~t~~~~f~~--ra~dqi~~~~a~~~~~~gg~~~lp-vvi~~~-~G~~ 205 (407)
..+++|+|+|++- -+.+++...-.-++ ..+|.+. .++.. ++| ++++.. ++..
T Consensus 122 ~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~-~A~~~--------~L~~li~v~dnN~~~ 192 (624)
T PRK05899 122 QGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACS-LAGHL--------KLGNLIVIYDDNRIS 192 (624)
T ss_pred hhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHH-HHHHh--------CCCCEEEEEECCCCc
Confidence 3455667776652 24455544433233 2356553 34443 777 444443 4432
Q ss_pred --CCCCcCccchHHHHHccCCCcEEEeeC--CHHHHHHHHHHHHhcCCCEEEee
Q 015415 206 --RQLGAEHSQRLESYFQSIPGIQMVACS--TPYNAKGLMKAAIRSENPVILFE 255 (407)
Q Consensus 206 --~~~G~tHsq~~ea~~~~iPgl~V~~P~--d~~e~~~~~~~a~~~~~Pv~ir~ 255 (407)
+.........+...++++ ||.++... |..++..+++++.+.++|++|..
T Consensus 193 ~~~~~~~~~~~~~~~~~~a~-G~~~~~VdG~d~~~l~~al~~a~~~~~P~vI~v 245 (624)
T PRK05899 193 IDGPTEGWFTEDVKKRFEAY-GWHVIEVDGHDVEAIDAAIEEAKASTKPTLIIA 245 (624)
T ss_pred ccccccccccccHHHHhccC-CCeEEEECCCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 221111212334567776 88888878 89999999999988889998853
No 183
>PRK06154 hypothetical protein; Provisional
Probab=80.58 E-value=21 Score=38.43 Aligned_cols=149 Identities=19% Similarity=0.148 Sum_probs=87.6
Q ss_pred ccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-C-CeeEE
Q 015415 85 HELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-G-LRPIV 162 (407)
Q Consensus 85 ~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G-~rp~~ 162 (407)
+.++..+++.+.|.++ +-+.++.-. + . .+.+.+.+ - .=|+|.+ -.|++++.||.|.|+. | -+|-+
T Consensus 18 ~~~~~a~~l~~~L~~~---GV~~vFGip--~----~-~l~dal~~-~-~i~~i~~-rhE~~A~~mAdgyar~t~g~~~gv 84 (565)
T PRK06154 18 KTMKVAEAVAEILKEE---GVELLFGFP--V----N-ELFDAAAA-A-GIRPVIA-RTERVAVHMADGYARATSGERVGV 84 (565)
T ss_pred CcccHHHHHHHHHHHc---CCCEEEeCc--C----H-HHHHHHHh-c-CCeEEee-CcHHHHHHHHHHHHHhcCCCCCEE
Confidence 3445566666666543 334444333 1 1 23455533 2 3588887 5999999999999986 3 34444
Q ss_pred E--ecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCC--CCCcCccchHHHHHccCCCcEEEeeCCHHHHH
Q 015415 163 E--GMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGR--QLGAEHSQRLESYFQSIPGIQMVACSTPYNAK 238 (407)
Q Consensus 163 ~--t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~--~~G~tHsq~~ea~~~~iPgl~V~~P~d~~e~~ 238 (407)
+ |..+.+ .-+..-|.+ |+.. +.||+++....... ..+..+ +. ..+++.+--+ .....+++++.
T Consensus 85 ~~~t~GPG~-~N~~~gla~--A~~~-------~~Pvl~i~G~~~~~~~~~~~~~-d~-~~~~~~vtk~-~~~v~~~~~~~ 151 (565)
T PRK06154 85 FAVQYGPGA-ENAFGGVAQ--AYGD-------SVPVLFLPTGYPRGSTDVAPNF-ES-LRNYRHITKW-CEQVTLPDEVP 151 (565)
T ss_pred EEECCCccH-HHHHHHHHH--Hhhc-------CCCEEEEeCCCCcccccCCCCc-ch-hhhHhhccee-EEECCCHHHHH
Confidence 3 334444 445555542 3332 79999885221111 111123 11 2577776554 56778888888
Q ss_pred HHHHHHHh-----cCCCEEEeecccc
Q 015415 239 GLMKAAIR-----SENPVILFEHVLL 259 (407)
Q Consensus 239 ~~~~~a~~-----~~~Pv~ir~~r~~ 259 (407)
..++.|++ .++||||-.+...
T Consensus 152 ~~i~~A~~~A~s~~~GPV~l~iP~Dv 177 (565)
T PRK06154 152 ELMRRAFTRLRNGRPGPVVLELPVDV 177 (565)
T ss_pred HHHHHHHHHHhcCCCceEEEecchHH
Confidence 88888876 2689999877543
No 184
>PRK07524 hypothetical protein; Provisional
Probab=80.42 E-value=13 Score=39.53 Aligned_cols=111 Identities=14% Similarity=0.162 Sum_probs=64.2
Q ss_pred CCceEe-cc-c-hhHHHHHHHHHHHhcC-CeeEEEecc-hhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCC
Q 015415 133 DLRVLD-TP-I-AENSFTGMGIGAAMTG-LRPIVEGMN-MGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGR 206 (407)
Q Consensus 133 p~R~i~-~G-I-aE~~~vg~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~ 206 (407)
|.+|++ .+ . +=-..++.|.|++++. -+++++... ..|++.+.| |. .+... ++|++++. .++..+
T Consensus 396 p~~~~~~~~~~g~mG~~lp~aiGa~lA~p~~~vv~i~GDG~f~~~~~e-l~-ta~~~--------~lpi~~vV~NN~~~g 465 (535)
T PRK07524 396 PRRWFNASTGYGTLGYGLPAAIGAALGAPERPVVCLVGDGGLQFTLPE-LA-SAVEA--------DLPLIVLLWNNDGYG 465 (535)
T ss_pred CCceEeCCCCcccccchHHHHHHHHHhCCCCcEEEEEcchHHhhhHHH-HH-HHHHh--------CCCeEEEEEECCchH
Confidence 778887 21 1 1222567788888873 345554444 344444433 43 33332 78988765 333221
Q ss_pred ------------CCCcC-ccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 207 ------------QLGAE-HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 207 ------------~~G~t-Hsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
..+.. |.-.+..+...+ |++-....+++|+...++++++.++|++|-
T Consensus 466 ~i~~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 525 (535)
T PRK07524 466 EIRRYMVARDIEPVGVDPYTPDFIALARAF-GCAAERVADLEQLQAALRAAFARPGPTLIE 525 (535)
T ss_pred HHHHHHHHhcCCccccCCCCCCHHHHHHHC-CCcEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 01111 211233444444 555667789999999999999999999884
No 185
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=80.17 E-value=14 Score=39.80 Aligned_cols=109 Identities=18% Similarity=0.294 Sum_probs=63.1
Q ss_pred ceEec-cc-hhHHHHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCC---
Q 015415 135 RVLDT-PI-AENSFTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGR--- 206 (407)
Q Consensus 135 R~i~~-GI-aE~~~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~--- 206 (407)
+|+.. |. +=-..+++|.|++++. -+++++...- .|++- ...+. .+... ++|++++. .++..+
T Consensus 429 ~~~~~~g~gsmG~~l~~aiGa~la~~~~~vv~i~GDGsf~~~-~~el~-ta~~~--------~l~~~~vv~NN~~~g~~~ 498 (578)
T PRK06112 429 RFLTPRGLAGLGWGVPMAIGAKVARPGAPVICLVGDGGFAHV-WAELE-TARRM--------GVPVTIVVLNNGILGFQK 498 (578)
T ss_pred eEECCCCccccccHHHHHHHHHhhCCCCcEEEEEcchHHHhH-HHHHH-HHHHh--------CCCeEEEEEeCCccCCEE
Confidence 57654 21 2235677888888874 3566654443 33333 33342 34433 78877766 343211
Q ss_pred --C---CCcC----c--cchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 207 --Q---LGAE----H--SQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 207 --~---~G~t----H--sq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
. .+.. + .-.+..+..++ |+.-+...+++|+...++++++.++|++|-
T Consensus 499 ~~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lIe 556 (578)
T PRK06112 499 HAETVKFGTHTDACHFAAVDHAAIARAC-GCDGVRVEDPAELAQALAAAMAAPGPTLIE 556 (578)
T ss_pred eccccccCCccccCcCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 1111 1 11222444444 666777889999999999999989999884
No 186
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=79.88 E-value=18 Score=44.27 Aligned_cols=149 Identities=14% Similarity=0.075 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhhh-CCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEE-ecchh
Q 015415 91 EALREGLEEEMDR-DPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVE-GMNMG 168 (407)
Q Consensus 91 ~a~~~~L~~l~~~-d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~-t~~~~ 168 (407)
..+++.|.+.+++ +=+.++..+... ...+.+.+.+ .+.=|++.+ ..|+++.-||.|.|+.--+|-++ +....
T Consensus 301 ~~~a~~lv~~L~~~GV~~vFg~PG~~----~~pL~dAl~~-~~~i~~i~~-rhErsAafmAdGyAR~TgkpgV~i~TsGP 374 (1655)
T PLN02980 301 AVWASLIIEECTRLGLTYFCVAPGSR----SSPLAIAASN-HPLTTCIAC-FDERSLAFHALGYARGSLKPAVVITSSGT 374 (1655)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCC----CHHHHHHHHh-CCCCeEEec-cCcchHHHHHHHHHHHhCCCEEEEEeCcH
Confidence 3455556555553 344444433211 1223344432 212477777 69999999999999995555443 22333
Q ss_pred HHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCC--CCCcCccchHH--HHHccCCCcEEEe--eCCH-------H
Q 015415 169 FLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGR--QLGAEHSQRLE--SYFQSIPGIQMVA--CSTP-------Y 235 (407)
Q Consensus 169 f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~--~~G~tHsq~~e--a~~~~iPgl~V~~--P~d~-------~ 235 (407)
...-.+--+.+ +... ++||+++...-... +.|. + |.++ ++++.+--+..-. |.+. .
T Consensus 375 G~tN~l~av~e-A~~d--------~vPlLvItgd~p~~~~~~ga-~-Q~iDq~~lf~pvtK~s~~v~~p~~~~~~~~l~~ 443 (1655)
T PLN02980 375 AVSNLLPAVVE-ASQD--------FVPLLLLTADRPPELQDAGA-N-QAINQVNHFGSFVRFFFNLPPPTDLIPARMVLT 443 (1655)
T ss_pred HHHHHHHHHHH-Hhhc--------CCCEEEEeCCCCHHHhcCCC-C-cccchhhHHHhhhheeecCCCccchhhHHHHHH
Confidence 34445555542 3332 79999986332221 1222 3 4333 6787776654443 3331 2
Q ss_pred HHHHHHHHHHhc-CCCEEEeec
Q 015415 236 NAKGLMKAAIRS-ENPVILFEH 256 (407)
Q Consensus 236 e~~~~~~~a~~~-~~Pv~ir~~ 256 (407)
.+..+++.|... ++||+|-.+
T Consensus 444 ~v~~A~~~A~s~rpGPVhL~iP 465 (1655)
T PLN02980 444 TLDSAVHWATSSPCGPVHINCP 465 (1655)
T ss_pred HHHHHHHHHhCCCCCCEEEECc
Confidence 334444444443 589999766
No 187
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=79.87 E-value=7.2 Score=41.86 Aligned_cols=99 Identities=14% Similarity=0.145 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCCeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCCCC-------------
Q 015415 145 SFTGMGIGAAMTGLRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQLG------------- 209 (407)
Q Consensus 145 ~~vg~A~GlA~~G~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~~G------------- 209 (407)
..++.|.|++++--+++++...- .|++ ....+-. +.. .++|++++. .+|.++-.+
T Consensus 429 ~~lpaaiGaala~~~~vv~i~GDGsf~~-~~~eL~T-a~r--------~~l~i~ivVlNN~g~~~~~~~~~~~~~~~~~~ 498 (568)
T PRK07449 429 GLLSTAAGVARASAKPTVALIGDLSFLH-DLNGLLL-LKQ--------VPAPLTIVVVNNNGGGIFSLLPQPEEEPVFER 498 (568)
T ss_pred hHHHHHHHHHhcCCCCEEEEechHHhhc-CcHHHHh-hcc--------cCCCeEEEEEECCCCccccCCCCCCCcchhhH
Confidence 35788899888844566664443 3332 2222322 222 278877665 333222111
Q ss_pred ---cCccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 210 ---AEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 210 ---~tHsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
..+.-.+..+...+ |++-+...+++|+...++++++.++|++|-
T Consensus 499 ~~~~~~~~df~~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~p~lIe 545 (568)
T PRK07449 499 FFGTPHGVDFAHAAAMY-GLEYHRPETWAELEEALADALPTPGLTVIE 545 (568)
T ss_pred hhcCCCCCCHHHHHHHc-CCCccCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 01111222333332 555677899999999999999889999884
No 188
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=79.68 E-value=10 Score=41.09 Aligned_cols=111 Identities=10% Similarity=0.035 Sum_probs=63.6
Q ss_pred CCceEeccc--hhHHHHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCC
Q 015415 133 DLRVLDTPI--AENSFTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQ 207 (407)
Q Consensus 133 p~R~i~~GI--aE~~~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~ 207 (407)
|.+|+..+- +=-..++.|+|++++. -|+++....- .|++-+ ..|- .+... ++|++++. .++..+.
T Consensus 408 p~~~~~~~~~gsmG~glpaaiGa~lA~pdr~Vv~i~GDG~f~m~~-~EL~-Ta~r~--------~lpvv~iV~NN~~yg~ 477 (588)
T TIGR01504 408 PRHWINCGQAGPLGWTIPAALGVCAADPKRNVVALSGDYDFQFMI-EELA-VGAQH--------NIPYIHVLVNNAYLGL 477 (588)
T ss_pred CCcEEeCCccccccchHhHHHhhhhhCCCCcEEEEEcchHhhccH-HHHH-HHHHh--------CCCeEEEEEeCCchHH
Confidence 788887641 1122455667777763 4566665453 343333 3332 23322 78887765 3332210
Q ss_pred --------CC-----cCc-----------cchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----cCCCEEEe
Q 015415 208 --------LG-----AEH-----------SQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIR----SENPVILF 254 (407)
Q Consensus 208 --------~G-----~tH-----------sq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir 254 (407)
.+ ... .-.+..+.+++ |..-....+++|+..+++++++ .++|++|-
T Consensus 478 i~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~~~~~p~lIe 551 (588)
T TIGR01504 478 IRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGL-GCKAIRVFKPEEIAPAFEQAKALMAEHRVPVVVE 551 (588)
T ss_pred HHHHHHHhcccccceeeccccccccccCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhhcccCCCcEEEE
Confidence 00 000 11233455555 6677778999999999999995 68899884
No 189
>PLN02470 acetolactate synthase
Probab=79.64 E-value=19 Score=38.95 Aligned_cols=111 Identities=14% Similarity=0.080 Sum_probs=64.9
Q ss_pred CCceEeccc--hhHHHHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCC
Q 015415 133 DLRVLDTPI--AENSFTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQ 207 (407)
Q Consensus 133 p~R~i~~GI--aE~~~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~ 207 (407)
|.+|+..+- +=-..++.|+|++++. -|++++...- .|++-+ ..|- .+... ++|++++. .++..+.
T Consensus 416 p~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~-~eL~-Ta~~~--------~l~v~ivV~NN~~yg~ 485 (585)
T PLN02470 416 PRRWLTSGGLGAMGFGLPAAIGAAAANPDAIVVDIDGDGSFIMNI-QELA-TIHVE--------NLPVKIMVLNNQHLGM 485 (585)
T ss_pred CCeEEcCCccccccchHHHHHHHHHhCCCCcEEEEEccchhhccH-HHHH-HHHHh--------CCCeEEEEEeCCcchH
Confidence 788886520 2223677788888874 3555554453 333333 3332 23332 78877665 3332210
Q ss_pred --------CCc----Cc----------cchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 208 --------LGA----EH----------SQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 208 --------~G~----tH----------sq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
.+. .+ ...+..+.+.+ |..-....++.|+..++++++..++|++|-
T Consensus 486 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 553 (585)
T PLN02470 486 VVQWEDRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGC-KIPAARVTRKSDLREAIQKMLDTPGPYLLD 553 (585)
T ss_pred HHHHHHHHhCCceeeeecCccccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 000 10 02333455554 677788899999999999999989999884
No 190
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=79.22 E-value=12 Score=40.62 Aligned_cols=107 Identities=18% Similarity=0.229 Sum_probs=61.1
Q ss_pred EeccchhHHHHHHHHHHHhcC------CeeEEEecchhHHH--HHHHHHHHhhhhhchhcCCcccccEEEEec-CCCCCC
Q 015415 137 LDTPIAENSFTGMGIGAAMTG------LRPIVEGMNMGFLL--LAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGVGRQ 207 (407)
Q Consensus 137 i~~GIaE~~~vg~A~GlA~~G------~rp~~~t~~~~f~~--ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~~~~ 207 (407)
+.+| .=-+.+++|.|+|++- .+++++.+.-.-++ ..++.+. .++.. +.|++++.. ++.. -
T Consensus 114 ~~~G-~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Eal~-~A~~~--------~~nli~IvdnN~~~-i 182 (580)
T PRK05444 114 FGAG-HSSTSISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEALN-NAGDL--------KSDLIVILNDNEMS-I 182 (580)
T ss_pred ECCC-hHHHHHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHHHH-HHHhh--------CCCEEEEEECCCCc-C
Confidence 3444 2334566778877652 34566644433333 5566663 34443 678777764 4432 2
Q ss_pred CCcCc------c-chHHHHHccCCCcEEEee---CCHHHHHHHHHHHHhcCCCEEEee
Q 015415 208 LGAEH------S-QRLESYFQSIPGIQMVAC---STPYNAKGLMKAAIRSENPVILFE 255 (407)
Q Consensus 208 ~G~tH------s-q~~ea~~~~iPgl~V~~P---~d~~e~~~~~~~a~~~~~Pv~ir~ 255 (407)
++++. . ......++.. ||.++.+ .|.+++..+++.+...++|++|..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~a~-G~~~~~~vdG~d~~~l~~al~~a~~~~~P~lI~~ 239 (580)
T PRK05444 183 SPNVGALSNYLARLRSSTLFEEL-GFNYIGPIDGHDLDALIETLKNAKDLKGPVLLHV 239 (580)
T ss_pred CCcchhhhhhhccccHHHHHHHc-CCCeeeeeCCCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 22221 0 1111345544 6766644 788899999988887789998853
No 191
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=79.20 E-value=23 Score=38.57 Aligned_cols=111 Identities=13% Similarity=0.095 Sum_probs=64.0
Q ss_pred CCceEeccc-h-hHHHHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCC
Q 015415 133 DLRVLDTPI-A-ENSFTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQ 207 (407)
Q Consensus 133 p~R~i~~GI-a-E~~~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~ 207 (407)
|++|+..+- . =-..+..|+|++++. -|++++...- .|++-..| |. .+... ++|+++++ .++..+.
T Consensus 424 p~~~~~s~~~g~mG~glpaAiGA~lA~p~r~Vv~i~GDG~f~m~~~e-L~-Ta~r~--------~lpvi~vV~NN~~~g~ 493 (616)
T PRK07418 424 PRRWISSAGLGTMGFGMPAAMGVKVALPDEEVICIAGDASFLMNIQE-LG-TLAQY--------GINVKTVIINNGWQGM 493 (616)
T ss_pred CCeEEcCCCccccccHHHHHHHHHHhCCCCcEEEEEcchHhhhhHHH-HH-HHHHh--------CCCeEEEEEECCcchH
Confidence 888886531 1 112445677777763 3666665443 34443333 32 23332 78888776 3332210
Q ss_pred --------CC----cC----ccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 208 --------LG----AE----HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 208 --------~G----~t----Hsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
.+ .+ +.-.+..+..++ |+.-+...+++|+...++.|+..++|++|-
T Consensus 494 i~~~q~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~g~~V~~~~el~~al~~a~~~~~p~lIe 555 (616)
T PRK07418 494 VRQWQESFYGERYSASNMEPGMPDFVKLAEAF-GVKGMVISERDQLKDAIAEALAHDGPVLID 555 (616)
T ss_pred HHHHHHHhcCCCceeecCCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 00 01 111233444444 677788899999999999999989999984
No 192
>PRK12474 hypothetical protein; Provisional
Probab=78.49 E-value=19 Score=38.19 Aligned_cols=146 Identities=10% Similarity=0.063 Sum_probs=76.9
Q ss_pred HHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccch-hHHHHHHHHHHHhcC-CeeEEEecch-h
Q 015415 92 ALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIA-ENSFTGMGIGAAMTG-LRPIVEGMNM-G 168 (407)
Q Consensus 92 a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIa-E~~~vg~A~GlA~~G-~rp~~~t~~~-~ 168 (407)
.+-..|.+.+.+| . ++..|.+.... + ....|.-+. |.+|+..+-. =-..+..|+|++++- -|++++...- .
T Consensus 345 ~~~~~l~~~l~~d-~--iv~~d~g~~~~-~-~~~~~~~~~-p~~~~~~~~gsmG~glpaAiGa~lA~p~r~vv~i~GDG~ 418 (518)
T PRK12474 345 GVAQLIAHRTPDQ-A--IYADEALTSGL-F-FDMSYDRAR-PHTHLPLTGGSIGQGLPLAAGAAVAAPDRKVVCPQGDGG 418 (518)
T ss_pred HHHHHHHHHCCCC-e--EEEECCCcCHH-H-HHHhhcccC-CCCEEccCCCccCccHHHHHHHHHHCCCCcEEEEEcCch
Confidence 3556666666533 2 33445543221 1 112222233 7888865321 112455677777773 3455554443 3
Q ss_pred HHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCC------------CCc-----C--cc--chHHHHHccCCCc
Q 015415 169 FLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQ------------LGA-----E--HS--QRLESYFQSIPGI 226 (407)
Q Consensus 169 f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~------------~G~-----t--Hs--q~~ea~~~~iPgl 226 (407)
|.+-+ ..|- .+... ++|++++. .++.++- .+. + +. -.+..+.+.+ |.
T Consensus 419 f~m~~-qEL~-Ta~r~--------~lpv~iiV~NN~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~ 487 (518)
T PRK12474 419 AAYTM-QALW-TMARE--------NLDVTVVIFANRSYAILNGELQRVGAQGAGRNALSMLDLHNPELNWMKIAEGL-GV 487 (518)
T ss_pred hcchH-HHHH-HHHHH--------CCCcEEEEEcCCcchHHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHC-CC
Confidence 43333 3332 23332 78877665 3332210 010 0 11 1233444444 66
Q ss_pred EEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 227 QMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 227 ~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
.-....+++|+..++++++..++|++|-
T Consensus 488 ~~~rv~~~~eL~~al~~a~~~~~p~lie 515 (518)
T PRK12474 488 EASRATTAEEFSAQYAAAMAQRGPRLIE 515 (518)
T ss_pred eEEEeCCHHHHHHHHHHHHcCCCCEEEE
Confidence 7788899999999999999989999873
No 193
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=77.77 E-value=35 Score=36.80 Aligned_cols=109 Identities=8% Similarity=0.023 Sum_probs=61.9
Q ss_pred CCceEeccchhHHH----HHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCC
Q 015415 133 DLRVLDTPIAENSF----TGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVG 205 (407)
Q Consensus 133 p~R~i~~GIaE~~~----vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~ 205 (407)
|.+|+..+. .+. ++.|.|++++- -|+++....- .|++-.-| | ..+... ++|++++. .++..
T Consensus 398 ~~~~~~~~~--~gsmG~glpaAiGa~la~p~r~Vv~i~GDGsf~m~~~e-L-~Tavr~--------~lpi~~VV~NN~~y 465 (575)
T TIGR02720 398 KNKWITSNL--FATMGVGVPGAIAAKLNYPDRQVFNLAGDGAFSMTMQD-L-LTQVQY--------HLPVINIVFSNCTY 465 (575)
T ss_pred CCeEEcCCC--cchhhchHHHHHHHHHhCCCCcEEEEEcccHHHhhHHH-H-HHHHHh--------CCCeEEEEEeCCcc
Confidence 678887652 244 44555555553 2555554443 34443333 3 233333 78888775 44332
Q ss_pred CC--------CCcCc-----cchHHHHHccCCCcEEEeeCCHHHHHHHHHHHH--hcCCCEEEe
Q 015415 206 RQ--------LGAEH-----SQRLESYFQSIPGIQMVACSTPYNAKGLMKAAI--RSENPVILF 254 (407)
Q Consensus 206 ~~--------~G~tH-----sq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~--~~~~Pv~ir 254 (407)
+. .+..+ .-.+..+.+.+ |..-....+..|+...+++++ ..++|++|-
T Consensus 466 g~i~~~~~~~~~~~~~~~~~~~df~~iA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~p~lie 528 (575)
T TIGR02720 466 GFIKDEQEDTNQPLIGVDFNDADFAKIAEGV-GAVGFRVNKIEQLPAVFEQAKAIKQGKPVLID 528 (575)
T ss_pred HHHHHHHHHhCCCcccccCCCCCHHHHHHHC-CCEEEEeCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 21 11111 11233454544 666677799999999999999 778899874
No 194
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=77.44 E-value=15 Score=39.00 Aligned_cols=137 Identities=17% Similarity=0.159 Sum_probs=83.6
Q ss_pred CCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEEecchhHHHHHHHHHHHhhhh
Q 015415 105 PHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGMNMGFLLLAFNQISNNCGM 183 (407)
Q Consensus 105 ~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~ 183 (407)
+.++.+-.|-. ..+++.+.+.- .=|++.+- .|-|+.=+|=|.|+. |.-.++.| |...-+-|++-|-- +|
T Consensus 20 ~~iFGVPGDyN-----L~lLD~i~~~~-~lrWvGn~-NELNaaYAADGYaR~~Gi~alvTT-fGVGELSA~NGIAG--SY 89 (557)
T COG3961 20 KSIFGVPGDYN-----LSLLDKIYSVP-GLRWVGNA-NELNAAYAADGYARLNGISALVTT-FGVGELSALNGIAG--SY 89 (557)
T ss_pred ceeeeCCCccc-----HHHHHHhhcCC-Cceeeccc-chhhhhhhhcchhhhcCceEEEEe-cccchhhhhcccch--hh
Confidence 55666666532 24455554432 35888885 999999999999998 87777776 55556677777743 34
Q ss_pred hchhcCCcccccEEEEe--cCCCCCCCCc-Ccc----chHHHHHccCCCc----EEEeeCC--HHHHHHHHHHHHhcCCC
Q 015415 184 LHYTSGGQFTIPIVIRG--PGGVGRQLGA-EHS----QRLESYFQSIPGI----QMVACST--PYNAKGLMKAAIRSENP 250 (407)
Q Consensus 184 ~~~~~gg~~~lpvvi~~--~~G~~~~~G~-tHs----q~~ea~~~~iPgl----~V~~P~d--~~e~~~~~~~a~~~~~P 250 (407)
.- ++||+.+. |.-..-..|. -|| +.|+-+++--..+ ..+.+.+ +.|...+++.++..++|
T Consensus 90 AE-------~vpVvhIvG~P~~~~q~~~~llHHTLG~gdF~~f~~M~~~itca~a~l~~~~~A~~eIDrvi~~~~~~~RP 162 (557)
T COG3961 90 AE-------HVPVVHIVGVPTTSAQASGLLLHHTLGDGDFKVFHRMSKEITCAQAMLTDINTAPREIDRVIRTALKQRRP 162 (557)
T ss_pred hh-------cCCEEEEEcCCCcchhhccchheeeccCCchHHHHHHhhhhhhHhhhcCCcchhHHHHHHHHHHHHHhcCC
Confidence 32 79999875 3211111111 121 1222222211111 1334444 78899999999999999
Q ss_pred EEEeeccc
Q 015415 251 VILFEHVL 258 (407)
Q Consensus 251 v~ir~~r~ 258 (407)
|||.++..
T Consensus 163 vYI~lP~d 170 (557)
T COG3961 163 VYIGLPAD 170 (557)
T ss_pred eEEEcchH
Confidence 99986643
No 195
>PRK07586 hypothetical protein; Validated
Probab=76.31 E-value=45 Score=35.30 Aligned_cols=111 Identities=12% Similarity=0.068 Sum_probs=61.2
Q ss_pred CCceEeccc-hhHHHHHHHHHHHhc-CCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCC---
Q 015415 133 DLRVLDTPI-AENSFTGMGIGAAMT-GLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGR--- 206 (407)
Q Consensus 133 p~R~i~~GI-aE~~~vg~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~--- 206 (407)
|.+|+..+- +=-..+..|.|++++ .-|+++++..-.-.+.....|- .+... ++|++++. .++.++
T Consensus 376 ~~~~~~~~~g~mG~~lpaaiGa~lA~p~r~Vv~i~GDGsf~m~~~EL~-Ta~~~--------~lpv~ivV~NN~~y~~~~ 446 (514)
T PRK07586 376 PHDWLTLTGGAIGQGLPLATGAAVACPDRKVLALQGDGSAMYTIQALW-TQARE--------NLDVTTVIFANRAYAILR 446 (514)
T ss_pred CCCEEccCCcccccHHHHHHHHHHhCCCCeEEEEEechHHHhHHHHHH-HHHHc--------CCCCEEEEEeCchhHHHH
Confidence 788886531 111234556777776 2355665445332333334343 23332 78876554 333211
Q ss_pred -------CC--Cc--------Cc-cchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEE
Q 015415 207 -------QL--GA--------EH-SQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVIL 253 (407)
Q Consensus 207 -------~~--G~--------tH-sq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~i 253 (407)
.. |. .+ .-.+..+.+.+ |+.-+...+++|+..+++++++.++|++|
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~~~~el~~al~~a~~~~~p~li 510 (514)
T PRK07586 447 GELARVGAGNPGPRALDMLDLDDPDLDWVALAEGM-GVPARRVTTAEEFADALAAALAEPGPHLI 510 (514)
T ss_pred HHHHHhcCCCCCccccccccCCCCCCCHHHHHHHC-CCcEEEeCCHHHHHHHHHHHHcCCCCEEE
Confidence 00 10 01 01233444444 55667779999999999999988899987
No 196
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=76.20 E-value=44 Score=36.19 Aligned_cols=37 Identities=16% Similarity=0.365 Sum_probs=30.8
Q ss_pred HHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 217 ESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 217 ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
..+..++ |+.-+...+.+|+...+++++..++|++|-
T Consensus 506 ~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIe 542 (597)
T PRK08273 506 ARFAELL-GLKGIRVDDPEQLGAAWDEALAADRPVVLE 542 (597)
T ss_pred HHHHHHC-CCEEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 3455555 777889999999999999999999999884
No 197
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=75.78 E-value=30 Score=37.26 Aligned_cols=111 Identities=13% Similarity=0.055 Sum_probs=64.9
Q ss_pred CCceEeccc--hhHHHHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCC
Q 015415 133 DLRVLDTPI--AENSFTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQ 207 (407)
Q Consensus 133 p~R~i~~GI--aE~~~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~ 207 (407)
|.+|+..+- +=-..++.|+|++++. -|++++...- .|++-+.| |- .+... ++|++++. .++..+.
T Consensus 411 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~~E-L~-Ta~r~--------~lpv~~vV~NN~~y~~ 480 (572)
T PRK08979 411 PRRWINSGGLGTMGFGLPAAMGVKFAMPDETVVCVTGDGSIQMNIQE-LS-TALQY--------DIPVKIINLNNRFLGM 480 (572)
T ss_pred CCeEEccCCcccccchhhHHHhhhhhCCCCeEEEEEcchHhhccHHH-HH-HHHHc--------CCCeEEEEEeCCccHH
Confidence 788987652 2224566778877774 2455554443 44444433 32 23332 78887776 3432210
Q ss_pred ---------CCc-Cc-----cchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhc-CCCEEEe
Q 015415 208 ---------LGA-EH-----SQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRS-ENPVILF 254 (407)
Q Consensus 208 ---------~G~-tH-----sq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~-~~Pv~ir 254 (407)
.+. .+ .-.+..+.+++ |..-+...++.|+..+++.++.. ++|++|-
T Consensus 481 i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~eL~~al~~a~~~~~~p~lIe 542 (572)
T PRK08979 481 VKQWQDMIYQGRHSHSYMDSVPDFAKIAEAY-GHVGIRISDPDELESGLEKALAMKDRLVFVD 542 (572)
T ss_pred HHHHHHHHhCCcccccCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCcEEEE
Confidence 110 01 01222444554 66778899999999999999985 8898873
No 198
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=75.54 E-value=22 Score=38.65 Aligned_cols=110 Identities=15% Similarity=0.175 Sum_probs=61.9
Q ss_pred ceEeccchhHHHHHHHHHHHhc----CC-eeEEEecchhHH-H-HHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCC-
Q 015415 135 RVLDTPIAENSFTGMGIGAAMT----GL-RPIVEGMNMGFL-L-LAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVG- 205 (407)
Q Consensus 135 R~i~~GIaE~~~vg~A~GlA~~----G~-rp~~~t~~~~f~-~-ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~- 205 (407)
.++.+|+.= +.+++|.|+|++ |. ..+++.+.-.-+ . .++|.+ |.++.+ ++|++++. .++.+
T Consensus 108 ~~~~~g~~~-~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAl-n~A~~~--------k~~li~Ii~dN~~si 177 (581)
T PRK12315 108 DFFTVGHTS-TSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGL-NNAAEL--------KSNLIIIVNDNQMSI 177 (581)
T ss_pred CCcCCCcHH-HHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHH-HHHHhh--------CCCEEEEEECCCCcC
Confidence 345667644 567778888776 32 233433342222 2 678887 456665 78999887 34432
Q ss_pred -CCCCcC--ccc--------hHHHHHccC--CCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 206 -RQLGAE--HSQ--------RLESYFQSI--PGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 206 -~~~G~t--Hsq--------~~ea~~~~i--Pgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
+..+.. |.. .....+.++ +.+.++...|..++..++++|-..++|++|.
T Consensus 178 ~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~~~~gP~~i~ 239 (581)
T PRK12315 178 AENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFKEVKDIDHPIVLH 239 (581)
T ss_pred CCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 222211 100 112344544 4444445567777777777776668899985
No 199
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=75.40 E-value=41 Score=36.25 Aligned_cols=109 Identities=16% Similarity=0.131 Sum_probs=62.8
Q ss_pred CCceEeccchhHHHHH----HHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCC
Q 015415 133 DLRVLDTPIAENSFTG----MGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVG 205 (407)
Q Consensus 133 p~R~i~~GIaE~~~vg----~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~ 205 (407)
|.+|+..+ -.+.+| .|.|++++. -+++++...- .|++-+.| |- .+... ++|++++. .++..
T Consensus 420 p~~~~~~~--~~g~mG~~lpaaiGa~la~p~~~Vv~i~GDG~f~m~~~e-L~-Tavr~--------~lpvi~vV~NN~~y 487 (579)
T TIGR03457 420 PRKFLAPM--SFGNCGYAFPTIIGAKIAAPDRPVVAYAGDGAWGMSMNE-IM-TAVRH--------DIPVTAVVFRNRQW 487 (579)
T ss_pred CCeEEcCC--ccccccchHHHHHhhhhhCCCCcEEEEEcchHHhccHHH-HH-HHHHh--------CCCeEEEEEECcch
Confidence 78999653 234444 777877774 3566665453 34443322 32 23332 78887665 33322
Q ss_pred CC--------CCc----C-ccc--hHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh---cCCCEEEe
Q 015415 206 RQ--------LGA----E-HSQ--RLESYFQSIPGIQMVACSTPYNAKGLMKAAIR---SENPVILF 254 (407)
Q Consensus 206 ~~--------~G~----t-Hsq--~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~---~~~Pv~ir 254 (407)
+. .+. + ... .+..+...+ |..-+...+++|+...++.+++ .++|++|-
T Consensus 488 g~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~g~~v~~~~el~~al~~a~~~~~~~~p~lie 553 (579)
T TIGR03457 488 GAEKKNQVDFYNNRFVGTELESELSFAGIADAM-GAKGVVVDKPEDVGPALKKAIAAQAEGKTTVIE 553 (579)
T ss_pred HHHHHHHHHhhCCcceeccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhhCCCCCcEEEE
Confidence 10 111 1 111 233444444 6667788999999999999987 46798874
No 200
>PRK11269 glyoxylate carboligase; Provisional
Probab=75.13 E-value=28 Score=37.71 Aligned_cols=111 Identities=10% Similarity=0.032 Sum_probs=64.7
Q ss_pred CCceEeccc-hhH-HHHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCC
Q 015415 133 DLRVLDTPI-AEN-SFTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQ 207 (407)
Q Consensus 133 p~R~i~~GI-aE~-~~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~ 207 (407)
|.+|++.|- .=. ..+..|+|++++. -|++++...- .|++-..| |- .+... ++|++++. .++..|-
T Consensus 409 p~~~~~~~~~G~mG~glpaAiGa~la~p~r~Vv~i~GDG~f~m~~~e-L~-Ta~~~--------~lpv~~vV~NN~~~g~ 478 (591)
T PRK11269 409 PRHWINCGQAGPLGWTIPAALGVRAADPDRNVVALSGDYDFQFLIEE-LA-VGAQF--------NLPYIHVLVNNAYLGL 478 (591)
T ss_pred CCcEEeCCccccccchhhhHHhhhhhCCCCcEEEEEccchhhcCHHH-HH-HHHHh--------CCCeEEEEEeCCchhH
Confidence 788898752 222 2566788888774 4566665453 34343333 32 22222 78887765 3332210
Q ss_pred ---------CCc---C------------ccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----cCCCEEEe
Q 015415 208 ---------LGA---E------------HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIR----SENPVILF 254 (407)
Q Consensus 208 ---------~G~---t------------Hsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir 254 (407)
... + +.-.+..+.+++ |..-....+++|+...++++++ .++|++|-
T Consensus 479 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~~~~gp~lie 552 (591)
T PRK11269 479 IRQAQRAFDMDYCVQLAFENINSPELNGYGVDHVKVAEGL-GCKAIRVFKPEDIAPALEQAKALMAEFRVPVVVE 552 (591)
T ss_pred HHHHHHHhccCccceeeccccccccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhhcccCCCcEEEE
Confidence 000 0 101233444444 6778888999999999999985 67899883
No 201
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=74.45 E-value=11 Score=38.83 Aligned_cols=81 Identities=19% Similarity=0.310 Sum_probs=60.8
Q ss_pred EEeecCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcC---CcEEEEecCccccch--HH
Q 015415 279 EMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKT---HRVLIVEECMRTGGI--GA 353 (407)
Q Consensus 279 ~vl~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~---~~vvvvEe~~~~GGl--Gs 353 (407)
.++.+|.+++++..|.--+.-.+.+++. |.++.+|+..+=+|+|.+.|.+.+++. +.|.++....++|=+ =.
T Consensus 75 sl~~pgdkVLv~~nG~FG~R~~~ia~~~---g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~ 151 (383)
T COG0075 75 SLVEPGDKVLVVVNGKFGERFAEIAERY---GAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLK 151 (383)
T ss_pred hccCCCCeEEEEeCChHHHHHHHHHHHh---CCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHH
Confidence 3566788999999998887766655544 889999999999999999999999843 467777777765543 23
Q ss_pred HHHHHHHhc
Q 015415 354 SLTAAITEN 362 (407)
Q Consensus 354 ~I~~~l~e~ 362 (407)
+|++.+.+.
T Consensus 152 ~I~~~~k~~ 160 (383)
T COG0075 152 EIAKAAKEH 160 (383)
T ss_pred HHHHHHHHc
Confidence 556665554
No 202
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=74.29 E-value=8.8 Score=30.63 Aligned_cols=66 Identities=20% Similarity=0.174 Sum_probs=45.0
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhc-----CCcEEEEecCccccchHHH
Q 015415 284 GEHVTILTYS----RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKK-----THRVLIVEECMRTGGIGAS 354 (407)
Q Consensus 284 G~dv~Iia~G----~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~-----~~~vvvvEe~~~~GGlGs~ 354 (407)
..+++|++.| +....+.+|.+.|++.|++.+.+|+.. |.+ +++.+.+ +=..|++.... .||+...
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~----~~~-~~~~l~~~~g~~tvP~vfi~g~~-iGG~~~l 80 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILE----DEE-VRQGLKEYSNWPTFPQLYVNGEL-VGGCDIV 80 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCC----CHH-HHHHHHHHhCCCCCCEEEECCEE-EeCHHHH
Confidence 4679999988 477889999999999999999999753 222 3333322 22456666554 5887543
Q ss_pred H
Q 015415 355 L 355 (407)
Q Consensus 355 I 355 (407)
.
T Consensus 81 ~ 81 (90)
T cd03028 81 K 81 (90)
T ss_pred H
Confidence 3
No 203
>PLN02790 transketolase
Probab=73.95 E-value=17 Score=40.10 Aligned_cols=74 Identities=8% Similarity=0.199 Sum_probs=46.3
Q ss_pred HHHHHHHHhhhhhchhcCCccccc-EEEEe-cCCC--CCCCCcCccchHHHHHccCCCcEEEee----CCHHHHHHHHHH
Q 015415 172 LAFNQISNNCGMLHYTSGGQFTIP-IVIRG-PGGV--GRQLGAEHSQRLESYFQSIPGIQMVAC----STPYNAKGLMKA 243 (407)
Q Consensus 172 ra~dqi~~~~a~~~~~~gg~~~lp-vvi~~-~~G~--~~~~G~tHsq~~ea~~~~iPgl~V~~P----~d~~e~~~~~~~ 243 (407)
.++|.+. .++.+ ++| ++++. .++. .+..+......+...+.++ ||.++.+ .|.+++..+++.
T Consensus 153 ~~~EAl~-~A~~~--------~L~nli~i~d~N~~~i~~~~~~~~~~~~~~~f~a~-G~~~~~vdgg~hd~~~l~~a~~~ 222 (654)
T PLN02790 153 ISNEAAS-LAGHW--------GLGKLIVLYDDNHISIDGDTEIAFTEDVDKRYEAL-GWHTIWVKNGNTDYDEIRAAIKE 222 (654)
T ss_pred HHHHHHH-HHHHh--------CCCCEEEEEecCCccccCCcccccchhHHHHHHHc-CCeEEEECCCCCCHHHHHHHHHH
Confidence 6777763 45554 787 56555 4443 2222222222233566776 9999998 467788888888
Q ss_pred HHh-cCCCEEEee
Q 015415 244 AIR-SENPVILFE 255 (407)
Q Consensus 244 a~~-~~~Pv~ir~ 255 (407)
|.+ .++|++|..
T Consensus 223 a~~~~~~P~lI~~ 235 (654)
T PLN02790 223 AKAVTDKPTLIKV 235 (654)
T ss_pred HHhcCCCeEEEEE
Confidence 776 578999853
No 204
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=73.69 E-value=49 Score=35.63 Aligned_cols=111 Identities=11% Similarity=0.040 Sum_probs=63.6
Q ss_pred CCceEeccc--hhHHHHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCC
Q 015415 133 DLRVLDTPI--AENSFTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQ 207 (407)
Q Consensus 133 p~R~i~~GI--aE~~~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~ 207 (407)
|.+|+..+- +=-..++.|+|++++. -+++++...- .|++-..| |- .+... ++|++++. .++..+.
T Consensus 411 p~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~~e-L~-Ta~r~--------~l~v~ivV~NN~~yg~ 480 (574)
T PRK07979 411 PRRWINSGGLGTMGFGLPAALGVKMALPEETVVCVTGDGSIQMNIQE-LS-TALQY--------ELPVLVLNLNNRYLGM 480 (574)
T ss_pred CCeEEeCCCccchhhHHHHHHHHHHhCCCCeEEEEEcchhhhccHHH-HH-HHHHh--------CCCeEEEEEeCchhhH
Confidence 788887751 1123556777877773 2455554443 44443333 32 23332 78888776 3332211
Q ss_pred ---------CCc---Cc---cchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhc---CCCEEEe
Q 015415 208 ---------LGA---EH---SQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRS---ENPVILF 254 (407)
Q Consensus 208 ---------~G~---tH---sq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~---~~Pv~ir 254 (407)
.+. .. .-.+..+.+++ |..-+...+++|+..+++.+++. ++|.+|-
T Consensus 481 i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~-G~~g~~v~~~~eL~~al~~a~~~~~~~~p~lIe 544 (574)
T PRK07979 481 VKQWQDMIYSGRHSQSYMQSLPDFVRLAEAY-GHVGIQISHPDELESKLSEALEQVRNNRLVFVD 544 (574)
T ss_pred HHHHHHHhcCCccccccCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhccCCCCcEEEE
Confidence 111 10 01223444444 56667789999999999999985 8899884
No 205
>PTZ00089 transketolase; Provisional
Probab=72.53 E-value=26 Score=38.72 Aligned_cols=74 Identities=12% Similarity=0.258 Sum_probs=46.4
Q ss_pred HHHHHHHHhhhhhchhcCCccccc-EEEEe-cCCCCCCCCcCc---cchHHHHHccCCCcEEEeeC----CHHHHHHHHH
Q 015415 172 LAFNQISNNCGMLHYTSGGQFTIP-IVIRG-PGGVGRQLGAEH---SQRLESYFQSIPGIQMVACS----TPYNAKGLMK 242 (407)
Q Consensus 172 ra~dqi~~~~a~~~~~~gg~~~lp-vvi~~-~~G~~~~~G~tH---sq~~ea~~~~iPgl~V~~P~----d~~e~~~~~~ 242 (407)
.+||.+. .++.+ ++| ++++. .++. .-+|+++ ...+...+.++ ||.++.+. |.+++..+++
T Consensus 164 ~~~EAl~-~A~~~--------~L~nLi~i~d~N~~-~i~~~~~~~~~~~~~~~f~a~-G~~~i~v~dG~~D~~~l~~a~~ 232 (661)
T PTZ00089 164 VSQEALS-LAGHL--------GLEKLIVLYDDNKI-TIDGNTDLSFTEDVEKKYEAY-GWHVIEVDNGNTDFDGLRKAIE 232 (661)
T ss_pred HHHHHHH-HHHHh--------CCCCEEEEEECCCc-ccccCcccccCccHHHHHHhc-CCcEEEeCCCCCCHHHHHHHHH
Confidence 6677763 45544 776 55554 4443 2233443 23334677777 99999984 6677777777
Q ss_pred HHHhc-CCCEEEeec
Q 015415 243 AAIRS-ENPVILFEH 256 (407)
Q Consensus 243 ~a~~~-~~Pv~ir~~ 256 (407)
.|... ++|++|...
T Consensus 233 ~a~~~~~~P~~I~~~ 247 (661)
T PTZ00089 233 EAKKSKGKPKLIIVK 247 (661)
T ss_pred HHHhcCCCcEEEEEE
Confidence 77765 689998643
No 206
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=72.48 E-value=17 Score=39.18 Aligned_cols=146 Identities=18% Similarity=0.217 Sum_probs=77.8
Q ss_pred HHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccch-h-HHHHHHHHHHHhcCC-eeEEEecch-
Q 015415 92 ALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIA-E-NSFTGMGIGAAMTGL-RPIVEGMNM- 167 (407)
Q Consensus 92 a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIa-E-~~~vg~A~GlA~~G~-rp~~~t~~~- 167 (407)
.+-+.|.+++.. +. ++..|+|..+- |. ..+.+-+.|.+|+..|-- - -..+..|+|++++-- |+++++..-
T Consensus 363 ~v~~~l~~~~~~--da-iv~~d~G~~~~-w~--a~~~~~~~p~~~~~s~~~GtMG~glPaAIGAkla~P~r~Vv~i~GDG 436 (550)
T COG0028 363 YVIKVLRELLPD--DA-IVVTDVGQHQM-WA--ARYFDFYRPRRFLTSGGLGTMGFGLPAAIGAKLAAPDRKVVAIAGDG 436 (550)
T ss_pred HHHHHHHHhCCC--Ce-EEEeCCcHHHH-HH--HHhcccCCCCcEEcCCCCccccchHHHHHHHHhhCCCCcEEEEEccc
Confidence 344455555443 22 33456764321 21 222232338888887421 1 122344666666643 677775443
Q ss_pred hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCC--------CC----cCc-cch-HHHHHccCCCcEEEeeC
Q 015415 168 GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQ--------LG----AEH-SQR-LESYFQSIPGIQMVACS 232 (407)
Q Consensus 168 ~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~--------~G----~tH-sq~-~ea~~~~iPgl~V~~P~ 232 (407)
.|++-..| |- .+... ++|++++. .+|..+. .+ .++ ... +..+..++ |+.-+...
T Consensus 437 ~F~m~~qE-L~-Ta~r~--------~lpv~ivv~nN~~~g~v~~~q~~~~~~~~~~~~~~~~~f~klAea~-G~~g~~v~ 505 (550)
T COG0028 437 GFMMNGQE-LE-TAVRY--------GLPVKIVVLNNGGYGMVRQWQELFYGGRYSGTDLGNPDFVKLAEAY-GAKGIRVE 505 (550)
T ss_pred HHhccHHH-HH-HHHHh--------CCCEEEEEEECCccccchHHHHHhcCCCcceeecCCccHHHHHHHc-CCeeEEeC
Confidence 45444433 32 23322 77888776 3332211 11 111 112 33333332 67777888
Q ss_pred CHHHHHHHHHHHHhcCCCEEEe
Q 015415 233 TPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 233 d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
+++|+...++.|+..++|++|-
T Consensus 506 ~~~el~~al~~al~~~~p~lid 527 (550)
T COG0028 506 TPEELEEALEEALASDGPVLID 527 (550)
T ss_pred CHHHHHHHHHHHHhCCCCEEEE
Confidence 9999999999999999998874
No 207
>PRK08611 pyruvate oxidase; Provisional
Probab=72.31 E-value=40 Score=36.38 Aligned_cols=112 Identities=13% Similarity=0.108 Sum_probs=63.2
Q ss_pred CCCceEecc-chhH-HHHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCC
Q 015415 132 GDLRVLDTP-IAEN-SFTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGR 206 (407)
Q Consensus 132 gp~R~i~~G-IaE~-~~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~ 206 (407)
.|.+|+..+ ..-. ..+..|+|++++. -++++....- .|++- ...|- .+... ++|++++. .++..+
T Consensus 397 ~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDGsf~m~-~~eL~-Ta~r~--------~l~~iivV~NN~~~g 466 (576)
T PRK08611 397 TNQKFIISSWLGTMGCGLPGAIAAKIAFPDRQAIAICGDGGFSMV-MQDFV-TAVKY--------KLPIVVVVLNNQQLA 466 (576)
T ss_pred CCCeEEeCCCchhhhhhHHHHHHHHHhCCCCcEEEEEcccHHhhh-HHHHH-HHHHh--------CCCeEEEEEeCCcch
Confidence 367777532 2111 2455677777763 4566665553 34333 33342 23333 78876665 333221
Q ss_pred C-------CCc----Ccc--chHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 207 Q-------LGA----EHS--QRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 207 ~-------~G~----tHs--q~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
. .+. +.. -.+..+..++ |..-+...+++|+...++++++.++|++|.
T Consensus 467 ~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIe 526 (576)
T PRK08611 467 FIKYEQQAAGELEYAIDLSDMDYAKFAEAC-GGKGYRVEKAEELDPAFEEALAQDKPVIID 526 (576)
T ss_pred HHHHHHHHhcCCcccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 011 111 1222444444 667788899999999999999999999984
No 208
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=72.01 E-value=19 Score=38.80 Aligned_cols=111 Identities=14% Similarity=0.090 Sum_probs=64.0
Q ss_pred CCceEeccc--hhHHHHHHHHHHHhcCC-eeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCC
Q 015415 133 DLRVLDTPI--AENSFTGMGIGAAMTGL-RPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQ 207 (407)
Q Consensus 133 p~R~i~~GI--aE~~~vg~A~GlA~~G~-rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~ 207 (407)
|.+|+..+- +=-..+..|+|++++.- +++++...- .|++...| |. .+... ++|++++. .+|..+.
T Consensus 412 p~~~~~~~~~gsmG~~lp~aiGa~lA~p~~~vv~i~GDG~f~~~~~e-l~-Ta~~~--------~lpi~~vV~NN~~~~~ 481 (570)
T PRK06725 412 PRTFLTSGGLGTMGFGFPAAIGAQLAKEEELVICIAGDASFQMNIQE-LQ-TIAEN--------NIPVKVFIINNKFLGM 481 (570)
T ss_pred CCeEEccCCcccccchhhHHHhhHhhcCCCeEEEEEecchhhccHHH-HH-HHHHh--------CCCeEEEEEECCccHH
Confidence 778886531 11245667788777742 556654443 44444433 42 33332 78888776 3332211
Q ss_pred --------CC----cCc--cchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 208 --------LG----AEH--SQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 208 --------~G----~tH--sq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
.+ ... .-.+..+.+++ |..-....++.|+..+++.+...++|++|-
T Consensus 482 ~~~~q~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~~p~lie 541 (570)
T PRK06725 482 VRQWQEMFYENRLSESKIGSPDFVKVAEAY-GVKGLRATNSTEAKQVMLEAFAHEGPVVVD 541 (570)
T ss_pred HHHHHHHhcCCccccCcCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 00 011 11222344444 555566689999999999999999999884
No 209
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=71.89 E-value=8.4 Score=32.48 Aligned_cols=49 Identities=14% Similarity=0.106 Sum_probs=38.6
Q ss_pred EEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCC
Q 015415 287 VTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTH 337 (407)
Q Consensus 287 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~ 337 (407)
++|.+. +....+.+|.+.|+++|+..+++|+.. .|++.+.|.+.+++.+
T Consensus 2 i~iy~~-p~C~~crkA~~~L~~~gi~~~~~d~~~-~p~s~~eL~~~l~~~g 50 (113)
T cd03033 2 IIFYEK-PGCANNARQKALLEAAGHEVEVRDLLT-EPWTAETLRPFFGDLP 50 (113)
T ss_pred EEEEEC-CCCHHHHHHHHHHHHcCCCcEEeehhc-CCCCHHHHHHHHHHcC
Confidence 444433 456778899999999999999999987 7999998888777543
No 210
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=70.13 E-value=12 Score=32.45 Aligned_cols=66 Identities=21% Similarity=0.358 Sum_probs=45.3
Q ss_pred chhHHHHHHHHHHHhhCCCCceEEEeccc-ccC-------------chhhHHHHHhcCCcEEEEecCccccchHHHHHHH
Q 015415 293 SRMRYHVMQAAKTLVNKGYDPEVIDIRSL-KPF-------------DLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAA 358 (407)
Q Consensus 293 G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l-~Pf-------------d~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~ 358 (407)
|.....+..+++.|++.|+++++||++-. .|+ |.+.+.+.++..+.+|++=.-+ .|++...+..+
T Consensus 14 ~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~y-~~~~s~~lK~~ 92 (152)
T PF03358_consen 14 SNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPVY-NGSVSGQLKNF 92 (152)
T ss_dssp SHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEEB-TTBE-HHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEeecEE-cCcCChhhhHH
Confidence 34556677778888888999999999987 232 1234566777888877776665 47777666555
Q ss_pred H
Q 015415 359 I 359 (407)
Q Consensus 359 l 359 (407)
+
T Consensus 93 l 93 (152)
T PF03358_consen 93 L 93 (152)
T ss_dssp H
T ss_pred H
Confidence 4
No 211
>PRK07064 hypothetical protein; Provisional
Probab=69.99 E-value=24 Score=37.59 Aligned_cols=111 Identities=18% Similarity=0.181 Sum_probs=62.5
Q ss_pred CCceEeccc-hhHHHHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCC--
Q 015415 133 DLRVLDTPI-AENSFTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGR-- 206 (407)
Q Consensus 133 p~R~i~~GI-aE~~~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~-- 206 (407)
|.+++..+- +=-..++.|.|++++. -++++....- .|++- ...|-. +... ++|++++. .+|..+
T Consensus 396 p~~~~~~~~g~mG~~lpaAiGa~lA~p~~~vv~i~GDGsf~m~-~~eL~T-a~~~--------~lpv~ivV~NN~~yg~~ 465 (544)
T PRK07064 396 PRANVHALGGGIGQGLAMAIGAALAGPGRKTVGLVGDGGLMLN-LGELAT-AVQE--------NANMVIVLMNDGGYGVI 465 (544)
T ss_pred CCceeccCCCccccccchhhhhhhhCcCCcEEEEEcchHhhhh-HHHHHH-HHHh--------CCCeEEEEEeCChhHHH
Confidence 666665421 1112345677777774 3556654443 33333 333322 3332 78887775 333221
Q ss_pred --------C---CCc-CccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 207 --------Q---LGA-EHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 207 --------~---~G~-tHsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
+ .+. .|.-.+..+.+.+ |+.-....+++|+...++.++..++|++|-
T Consensus 466 ~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIe 524 (544)
T PRK07064 466 RNIQDAQYGGRRYYVELHTPDFALLAASL-GLPHWRVTSADDFEAVLREALAKEGPVLVE 524 (544)
T ss_pred HHHHHHhcCCccccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHcCCCCEEEE
Confidence 0 011 1212233444444 667788899999999999999989999884
No 212
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=69.89 E-value=9.6 Score=34.05 Aligned_cols=55 Identities=20% Similarity=0.202 Sum_probs=41.9
Q ss_pred EEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEec
Q 015415 287 VTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEE 344 (407)
Q Consensus 287 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe 344 (407)
++||+-|..-....++++.|++.|+.+=.|-+ ...|.+.|.....+-.+|+++++
T Consensus 110 ~vviTdG~s~d~~~~~a~~lr~~gv~i~~vG~---~~~~~~eL~~ias~p~~vf~v~~ 164 (165)
T cd01481 110 LVLITGGKSQDDVERPAVALKRAGIVPFAIGA---RNADLAELQQIAFDPSFVFQVSD 164 (165)
T ss_pred EEEEeCCCCcchHHHHHHHHHHCCcEEEEEeC---CcCCHHHHHHHhCCCccEEEecC
Confidence 45667776666788899999999876555444 35789999888888888998875
No 213
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=69.50 E-value=19 Score=27.93 Aligned_cols=58 Identities=22% Similarity=0.319 Sum_probs=38.4
Q ss_pred cEEEEEech-hHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHH-HhcCCcEEEEecCc
Q 015415 286 HVTILTYSR-MRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNS-IKKTHRVLIVEECM 346 (407)
Q Consensus 286 dv~Iia~G~-~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~-~~~~~~vvvvEe~~ 346 (407)
++.|++.+. ....|++.++.|++.|+.+.+ |.+. +.+... +..+ ..+...++++.+..
T Consensus 3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~-d~~~-~~~~~~-~~~a~~~g~~~~iiig~~e 62 (91)
T cd00860 3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEV-DLRN-EKLGKK-IREAQLQKIPYILVVGDKE 62 (91)
T ss_pred EEEEEeeCchHHHHHHHHHHHHHHCCCEEEE-ECCC-CCHHHH-HHHHHHcCCCEEEEECcch
Confidence 566777764 567899999999999999877 4443 444433 3332 23345778777654
No 214
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=68.16 E-value=14 Score=27.82 Aligned_cols=65 Identities=17% Similarity=0.108 Sum_probs=41.4
Q ss_pred cEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhc-CCcEEEEecCccccchHH
Q 015415 286 HVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKK-THRVLIVEECMRTGGIGA 353 (407)
Q Consensus 286 dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~-~~~vvvvEe~~~~GGlGs 353 (407)
+++|.+. +....+..|.+.|++.|++.+.+|+..-.+. .+.+.+.... +-.++++.+.. .||.-+
T Consensus 2 ~v~ly~~-~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~-~~el~~~~g~~~vP~v~i~~~~-iGg~~~ 67 (73)
T cd03027 2 RVTIYSR-LGCEDCTAVRLFLREKGLPYVEINIDIFPER-KAELEERTGSSVVPQIFFNEKL-VGGLTD 67 (73)
T ss_pred EEEEEec-CCChhHHHHHHHHHHCCCceEEEECCCCHHH-HHHHHHHhCCCCcCEEEECCEE-EeCHHH
Confidence 4566665 4457789999999999999999998753222 2334443332 22566666654 588653
No 215
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=68.11 E-value=15 Score=33.43 Aligned_cols=83 Identities=18% Similarity=0.254 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhcCCCEEEeecccc--------ccCCCCCCCc-cccccCCceEEeecCCcEEEEEechhHHHHHHHHH
Q 015415 234 PYNAKGLMKAAIRSENPVILFEHVLL--------YNLKERIPDE-EYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAK 304 (407)
Q Consensus 234 ~~e~~~~~~~a~~~~~Pv~ir~~r~~--------y~~~~~v~~~-~~~~~~Gk~~vl~eG~dv~Iia~G~~~~~al~Aa~ 304 (407)
-+|+.+++-+|+-.++-|||.--..+ ++ ..+++.- .+.-..++...+.+-..|.|++-.+.-.++.+.++
T Consensus 24 iedaARlLAQA~vgeG~IYi~G~~Em~~v~~~Al~g-~E~l~~~k~l~~~~~~~~~lt~~DRVllfs~~~~~~e~~~~a~ 102 (172)
T PF10740_consen 24 IEDAARLLAQAIVGEGTIYIYGFGEMEAVEAEALYG-AEPLPSAKRLSEDLENFDELTETDRVLLFSPFSTDEEAVALAK 102 (172)
T ss_dssp HHHHHHHHHHHHHTT--EEEEE-GGGGGGHHHHHCS-TT--TTEEE--TT--------TT-EEEEEES-S--HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCEEEEEecChHHHHHHHHHcC-CCCCchhhcCcccccccccccccceEEEEeCCCCCHHHHHHHH
Confidence 46788899999999999999511100 00 0111100 00001222334556678999999999999999999
Q ss_pred HHhhCCCCceEEE
Q 015415 305 TLVNKGYDPEVID 317 (407)
Q Consensus 305 ~L~~~Gi~v~VI~ 317 (407)
+|.++|+++-+|.
T Consensus 103 ~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 103 QLIEQGIPFVGVS 115 (172)
T ss_dssp HHHHHT--EEEEE
T ss_pred HHHHCCCCEEEEE
Confidence 9999999988887
No 216
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=67.64 E-value=51 Score=35.61 Aligned_cols=111 Identities=15% Similarity=0.096 Sum_probs=62.9
Q ss_pred CCceEeccc-hhH-HHHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCC
Q 015415 133 DLRVLDTPI-AEN-SFTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQ 207 (407)
Q Consensus 133 p~R~i~~GI-aE~-~~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~ 207 (407)
|.+|+..+- .=. ..++.|.|++++. -|+++....- .|++-. ..|.. +... ++|++++. .++..+.
T Consensus 425 p~~~~~~~~~g~mG~glp~aiGa~la~p~r~vv~i~GDG~f~~~~-~el~T-a~~~--------~lpv~ivV~NN~~y~~ 494 (588)
T PRK07525 425 GRKYLAPGSFGNCGYAFPAIIGAKIACPDRPVVGFAGDGAWGISM-NEVMT-AVRH--------NWPVTAVVFRNYQWGA 494 (588)
T ss_pred CCeEEccccccccccHHHHHHHHHHhCCCCcEEEEEcCchHhccH-HHHHH-HHHh--------CCCeEEEEEeCchhHH
Confidence 788886531 111 2566778888874 3666665553 333333 33432 3332 78887776 4432210
Q ss_pred -------------CCcCccc--hHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhc---CCCEEEe
Q 015415 208 -------------LGAEHSQ--RLESYFQSIPGIQMVACSTPYNAKGLMKAAIRS---ENPVILF 254 (407)
Q Consensus 208 -------------~G~tHsq--~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~---~~Pv~ir 254 (407)
.+..... .+..+...+ |..-+...+++|+...++.++.. ++|++|-
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~p~lIe 558 (588)
T PRK07525 495 EKKNQVDFYNNRFVGTELDNNVSYAGIAEAM-GAEGVVVDTQEELGPALKRAIDAQNEGKTTVIE 558 (588)
T ss_pred HHHHHHHHhCCCcccccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 0111111 222344443 55566778999999999999975 4799873
No 217
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=66.82 E-value=42 Score=36.03 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=64.2
Q ss_pred CCceEeccc--hhHHHHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCC
Q 015415 133 DLRVLDTPI--AENSFTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQ 207 (407)
Q Consensus 133 p~R~i~~GI--aE~~~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~ 207 (407)
|.+|+..+- +=-..+..|+|++++. -+++++...- .|++-+ ..|- .+... ++|++++. .++..+-
T Consensus 411 p~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i~GDG~f~m~~-~eL~-Ta~~~--------~l~i~ivV~NN~~yg~ 480 (572)
T PRK06456 411 PRTFLTSSGMGTMGFGLPAAMGAKLARPDKVVVDLDGDGSFLMTG-TNLA-TAVDE--------HIPVISVIFDNRTLGL 480 (572)
T ss_pred CCcEEcCCCcccccchhHHHHHHHHhCCCCeEEEEEccchHhcch-HHHH-HHHHh--------CCCeEEEEEECCchHH
Confidence 788887532 1112346778888774 3555554443 344433 3332 23332 78877765 3332110
Q ss_pred --------CC----cCc---cchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 208 --------LG----AEH---SQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 208 --------~G----~tH---sq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
.+ .+. .-.+..+.+++ |..-+...+++|+...+.++...++|.+|-
T Consensus 481 i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIe 541 (572)
T PRK06456 481 VRQVQDLFFGKRIVGVDYGPSPDFVKLAEAF-GALGFNVTTYEDIEKSLKSAIKEDIPAVIR 541 (572)
T ss_pred HHHHHHHhhCCCcccccCCCCCCHHHHHHHC-CCeeEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 01 111 11233455555 677788899999999999999989999873
No 218
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=66.38 E-value=16 Score=29.78 Aligned_cols=66 Identities=18% Similarity=0.127 Sum_probs=45.1
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhc-----CCcEEEEecCccccchHHH
Q 015415 284 GEHVTILTYS----RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKK-----THRVLIVEECMRTGGIGAS 354 (407)
Q Consensus 284 G~dv~Iia~G----~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~-----~~~vvvvEe~~~~GGlGs~ 354 (407)
..+++|++.| +....|.+|.+.|++.|++...+|+.. ...+.+.+++ +=..|.++... .||....
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~-----~~~~~~~l~~~tg~~tvP~vfi~g~~-iGG~ddl 84 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLE-----DPEIRQGIKEYSNWPTIPQLYVKGEF-VGGCDII 84 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCC-----CHHHHHHHHHHhCCCCCCEEEECCEE-EeChHHH
Confidence 4679999888 578889999999999999999999853 1223333322 22456676654 5887654
Q ss_pred H
Q 015415 355 L 355 (407)
Q Consensus 355 I 355 (407)
.
T Consensus 85 ~ 85 (97)
T TIGR00365 85 M 85 (97)
T ss_pred H
Confidence 4
No 219
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=66.37 E-value=50 Score=35.68 Aligned_cols=111 Identities=14% Similarity=0.115 Sum_probs=64.6
Q ss_pred CCceEeccc-h-hHHHHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCC
Q 015415 133 DLRVLDTPI-A-ENSFTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQ 207 (407)
Q Consensus 133 p~R~i~~GI-a-E~~~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~ 207 (407)
|.+|+..+- . =-..++.|+|++++- -+++++...- .|++-+.| | ..+... ++|+++++ .++..+.
T Consensus 420 ~~~~~~~~~~g~mG~glpaaiGaala~p~~~vv~i~GDG~f~m~~~e-L-~Ta~~~--------~l~~~~vV~NN~~y~~ 489 (585)
T CHL00099 420 PRKWLSSAGLGTMGYGLPAAIGAQIAHPNELVICISGDASFQMNLQE-L-GTIAQY--------NLPIKIIIINNKWQGM 489 (585)
T ss_pred CCcEEcCccccchhhhHHHHHHHHHhCCCCeEEEEEcchhhhhhHHH-H-HHHHHh--------CCCeEEEEEECCcchH
Confidence 788886431 1 122556788888773 3455554443 44443323 3 233333 78887766 3332110
Q ss_pred --------CC--cC------ccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 208 --------LG--AE------HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 208 --------~G--~t------Hsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
.+ .. |.-.+..+...+ |+.-....+++|+..++..++..++|.+|-
T Consensus 490 i~~~q~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 551 (585)
T CHL00099 490 VRQWQQAFYGERYSHSNMEEGAPDFVKLAEAY-GIKGLRIKSRKDLKSSLKEALDYDGPVLID 551 (585)
T ss_pred HHHHHHHhcCCCcccccCCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 00 00 111233455555 677778899999999999999989999884
No 220
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=66.22 E-value=21 Score=38.72 Aligned_cols=144 Identities=17% Similarity=0.212 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEEecc-
Q 015415 88 LLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMN- 166 (407)
Q Consensus 88 ~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~~- 166 (407)
+...++.....++.... +.|+|=|+ ++++. |-+-.|+-+.=-+.+|+|.|++.+.-+.+++++.
T Consensus 390 ~sf~~~k~~~~~~~~~~------~~DIGCyt--lg~~~-------P~~~~d~t~~mGssig~a~g~~~~~~k~~va~iGD 454 (640)
T COG4231 390 PSFYALKKAAAELGGHP------SGDIGCYT--LGILP-------PLNTVDTTTMMGSSIGIAGGLSFASTKKIVAVIGD 454 (640)
T ss_pred hhhHHHHHHHHhhCCCC------CCCcceee--cccCC-------CcchhhhhhhccchhhhccccccccCCceEEEecc
Confidence 34556666666554433 77887332 22221 4344555444456678899999775555555555
Q ss_pred hhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cC---CCCCC---C-------C--cCccchHHHHHc--cCCCcEE
Q 015415 167 MGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PG---GVGRQ---L-------G--AEHSQRLESYFQ--SIPGIQM 228 (407)
Q Consensus 167 ~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~---G~~~~---~-------G--~tHsq~~ea~~~--~iPgl~V 228 (407)
++|..-.+..|+|.+ +. +.+++++. .+ ..+|+ . | .++ ..+|.+-+ ++-.+.+
T Consensus 455 sTF~HsGi~~l~nAV-~n--------~~~~~~vvLdN~~tAMTGgQp~pg~~~~~~g~~~~~-i~iee~~r~~Gv~~v~~ 524 (640)
T COG4231 455 STFFHSGILALINAV-YN--------KANILVVVLDNRTTAMTGGQPHPGTGVAAEGTKSTA-IVIEEVVRAMGVEDVET 524 (640)
T ss_pred ccccccCcHHHHHHH-hc--------CCCeEEEEEeccchhccCCCCCCCcccccCCCccce-eEhhHhhhhcCceeeec
Confidence 577777778888644 43 56666554 22 11111 1 1 122 23343333 3455667
Q ss_pred EeeCCHHHHHHHHHHHHhcCCCEEEeec
Q 015415 229 VACSTPYNAKGLMKAAIRSENPVILFEH 256 (407)
Q Consensus 229 ~~P~d~~e~~~~~~~a~~~~~Pv~ir~~ 256 (407)
+.|.|-.++.+.++.|++.++|.+|...
T Consensus 525 vdp~~~~~~~~~~keale~~gpsViiak 552 (640)
T COG4231 525 VDPYDVKELSEAIKEALEVPGPSVIIAK 552 (640)
T ss_pred cCCcchHHHHHHHHHHhcCCCceEEEEc
Confidence 7799999999999999999999988633
No 221
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=65.24 E-value=9 Score=31.78 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCC
Q 015415 295 MRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTH 337 (407)
Q Consensus 295 ~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~ 337 (407)
....+.+|.+.|+++|++++.+|+.. .|++.+.|.+.++..+
T Consensus 5 ~C~t~rka~~~L~~~gi~~~~~d~~k-~p~s~~el~~~l~~~~ 46 (110)
T PF03960_consen 5 NCSTCRKALKWLEENGIEYEFIDYKK-EPLSREELRELLSKLG 46 (110)
T ss_dssp T-HHHHHHHHHHHHTT--EEEEETTT-S---HHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcCCCeEeehhhh-CCCCHHHHHHHHHHhc
Confidence 45678899999999999999999885 6899988887777654
No 222
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=64.67 E-value=50 Score=35.27 Aligned_cols=144 Identities=11% Similarity=0.034 Sum_probs=73.9
Q ss_pred HHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHH----HHHHHHhcC-CeeEEEecch
Q 015415 93 LREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTG----MGIGAAMTG-LRPIVEGMNM 167 (407)
Q Consensus 93 ~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg----~A~GlA~~G-~rp~~~t~~~ 167 (407)
+...|.+.+.+ ..+++. |.+... +. ..+.+-..|.+|+..+ -.+.+| .|+|++++. -|++++...-
T Consensus 361 ~~~~l~~~l~~-~~iiv~--d~G~~~--~~--~~~~~~~~~~~~~~~~--~~g~mG~glpaaiGa~la~p~~~vv~i~GD 431 (539)
T TIGR03393 361 FWQTLQTFLRP-GDIILA--DQGTSA--FG--AADLRLPADVNFIVQP--LWGSIGYTLPAAFGAQTACPNRRVILLIGD 431 (539)
T ss_pred HHHHHHHhcCC-CCEEEE--ccCchh--hh--hhhccCCCCCeEEech--hhhhhhhHHHHHHHHHhcCCCCCeEEEEcC
Confidence 55556666653 344443 444321 21 1122222256777654 345444 466666663 3556664453
Q ss_pred hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCC----CCC--cCc----cchHHHHHccC--C-CcEEEeeCC
Q 015415 168 GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGR----QLG--AEH----SQRLESYFQSI--P-GIQMVACST 233 (407)
Q Consensus 168 ~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~----~~G--~tH----sq~~ea~~~~i--P-gl~V~~P~d 233 (407)
.-.+.....|- .+... ++|++++. .++..+ ..+ ..+ ...+..+.+.+ + ++.-+...+
T Consensus 432 G~f~m~~~EL~-Ta~~~--------~lpi~~vV~NN~~y~~i~~~~~~~~~~~~~~~~df~~la~a~G~~~~~~~~~v~~ 502 (539)
T TIGR03393 432 GSAQLTIQELG-SMLRD--------KQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHLPQALSLDPQSECWRVSE 502 (539)
T ss_pred cHHHhHHHHHH-HHHHc--------CCCCEEEEEeCCceEEEEeecCCCCCcCcCCCCCHHHHHHHcCCCCccceEEecc
Confidence 32333333342 23332 78877665 333211 011 111 11232333322 1 234678899
Q ss_pred HHHHHHHHHHHHhcCCCEEEe
Q 015415 234 PYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 234 ~~e~~~~~~~a~~~~~Pv~ir 254 (407)
..|+...++++++.++|++|-
T Consensus 503 ~~el~~al~~a~~~~~p~lie 523 (539)
T TIGR03393 503 AEQLADVLEKVAAHERLSLIE 523 (539)
T ss_pred HHHHHHHHHHHhccCCeEEEE
Confidence 999999999999999999984
No 223
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=63.32 E-value=17 Score=31.32 Aligned_cols=44 Identities=23% Similarity=0.235 Sum_probs=36.8
Q ss_pred ec-hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcC
Q 015415 292 YS-RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKT 336 (407)
Q Consensus 292 ~G-~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~ 336 (407)
|| +....+++|.+.|+++|++.+++|+.- .|++.+.|.+.+++.
T Consensus 6 Y~~p~Cst~RKA~~~L~~~gi~~~~~d~~~-~p~t~~eL~~~l~~~ 50 (126)
T TIGR01616 6 YEKPGCANNARQKAALKASGHDVEVQDILK-EPWHADTLRPYFGNK 50 (126)
T ss_pred EeCCCCHHHHHHHHHHHHCCCCcEEEeccC-CCcCHHHHHHHHHHc
Confidence 44 456788999999999999999999886 789998888777754
No 224
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=62.53 E-value=28 Score=37.05 Aligned_cols=134 Identities=16% Similarity=0.107 Sum_probs=77.4
Q ss_pred CCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEEecchhHHHHHHHHHHHhhhh
Q 015415 105 PHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGMNMGFLLLAFNQISNNCGM 183 (407)
Q Consensus 105 ~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~ 183 (407)
+.++.+-.|-. ..+++.+. +.+.-|++.+- .|-|+.=.|=|.|+. |.-.++.| |...-+-|++-|- -+|
T Consensus 20 ksvfgVPGDFN-----L~LLD~l~-~~~~lrwvGn~-NELNaAYAADGYAR~~Gi~a~VtT-fgVGeLSAlNGIA--GsY 89 (561)
T KOG1184|consen 20 KTVFGVPGDFN-----LSLLDKLY-AVPGLRWVGNC-NELNAAYAADGYARSKGIGACVTT-FGVGELSALNGIA--GAY 89 (561)
T ss_pred ceeEECCCccc-----HHHHHHhh-hcCCceeeccc-chhhhhhhhcchhhhcCceEEEEE-eccchhhhhcccc--hhh
Confidence 55666666643 23444443 44235888774 899999999999998 87777776 5555566777764 344
Q ss_pred hchhcCCcccccEEEEecCCCCC-CCCc---Ccc----chHH---HHHccCCCcEEEeeCCHHHHHHHHHHH----HhcC
Q 015415 184 LHYTSGGQFTIPIVIRGPGGVGR-QLGA---EHS----QRLE---SYFQSIPGIQMVACSTPYNAKGLMKAA----IRSE 248 (407)
Q Consensus 184 ~~~~~gg~~~lpvvi~~~~G~~~-~~G~---tHs----q~~e---a~~~~iPgl~V~~P~d~~e~~~~~~~a----~~~~ 248 (407)
.- ++||+.+.- .+.. ..+. -|| ..+. -++..+. ....+-.|.+++-+.++.| +...
T Consensus 90 AE-------~vpVihIVG-~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vs-c~~a~I~~~e~A~~~ID~aI~~~~~~~ 160 (561)
T KOG1184|consen 90 AE-------NVPVIHIVG-VPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVT-CYTAMINDIEDAPEQIDKAIRTALKES 160 (561)
T ss_pred hh-------cCCEEEEEC-CCCcccccccchheeecCCCchHHHHHHHHhhh-hHHhhhcCHhhhHHHHHHHHHHHHHhc
Confidence 42 899998751 1111 1111 121 1221 2222221 1233445666665555555 4568
Q ss_pred CCEEEeecc
Q 015415 249 NPVILFEHV 257 (407)
Q Consensus 249 ~Pv~ir~~r 257 (407)
+||||-.+-
T Consensus 161 rPVYi~iP~ 169 (561)
T KOG1184|consen 161 KPVYIGVPA 169 (561)
T ss_pred CCeEEEeec
Confidence 999997654
No 225
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=61.61 E-value=14 Score=36.48 Aligned_cols=98 Identities=16% Similarity=0.169 Sum_probs=55.4
Q ss_pred HHHHHHHHhc----CCeeEEEecchhHH---HHHHHHHHHhhhhhchhcCCcccccEEEEec-CC--CCCCCC-cCccch
Q 015415 147 TGMGIGAAMT----GLRPIVEGMNMGFL---LLAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GG--VGRQLG-AEHSQR 215 (407)
Q Consensus 147 vg~A~GlA~~----G~rp~~~t~~~~f~---~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G--~~~~~G-~tHsq~ 215 (407)
+..|+|.|++ |.+.++..++.+.. -..+|-+ |.++.+ ++|||+++- ++ .+.+.- .+.+..
T Consensus 107 ~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~Eal-N~A~~~--------~lPvifvveNN~~aist~~~~~~~~~~ 177 (300)
T PF00676_consen 107 VPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEAL-NLAALW--------KLPVIFVVENNQYAISTPTEEQTASPD 177 (300)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHH-HHHHHT--------TTSEEEEEEEESEETTEEHHHHCSSST
T ss_pred CccccchhHhhhhcCCceeEEEEecCcccccCccHHHH-HHHhhc--------cCCeEEEEecCCcccccCccccccccc
Confidence 3444455544 65555554554443 2455655 455554 899999983 33 222111 111111
Q ss_pred H-H-HHHccCCCcEEEeeCCHHHHHHHHHHHHhc----CCCEEEe
Q 015415 216 L-E-SYFQSIPGIQMVACSTPYNAKGLMKAAIRS----ENPVILF 254 (407)
Q Consensus 216 ~-e-a~~~~iPgl~V~~P~d~~e~~~~~~~a~~~----~~Pv~ir 254 (407)
+ + +..-.+|++ .+.-.|+.++...++.|+++ ++|++|-
T Consensus 178 ~~~~a~~~gip~~-~VDG~D~~av~~a~~~A~~~~R~g~gP~lie 221 (300)
T PF00676_consen 178 IADRAKGYGIPGI-RVDGNDVEAVYEAAKEAVEYARAGKGPVLIE 221 (300)
T ss_dssp SGGGGGGTTSEEE-EEETTSHHHHHHHHHHHHHHHHTTT--EEEE
T ss_pred hhhhhhccCCcEE-EECCEeHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1 2 344468877 45788999999999988873 6899984
No 226
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=60.66 E-value=30 Score=34.87 Aligned_cols=60 Identities=17% Similarity=0.173 Sum_probs=29.5
Q ss_pred cccEEEEe-cCCCCCCCCcCc----cchHHHHHc--cCCCcEEEeeCCHHHH----HHHHHHHHhcCCCEEEe
Q 015415 193 TIPIVIRG-PGGVGRQLGAEH----SQRLESYFQ--SIPGIQMVACSTPYNA----KGLMKAAIRSENPVILF 254 (407)
Q Consensus 193 ~lpvvi~~-~~G~~~~~G~tH----sq~~ea~~~--~iPgl~V~~P~d~~e~----~~~~~~a~~~~~Pv~ir 254 (407)
++|+++++ .++... ..+++ ...+..... .+|++.| .-.|..++ ..+++.+.+.++|++|-
T Consensus 172 ~LPvi~Vv~NN~~~~-~~~~~~~~~~~d~~~~a~a~G~~~~~V-dg~d~~av~~a~~~A~~~a~~~~gP~lIe 242 (341)
T TIGR03181 172 KAPVVFFVQNNQWAI-SVPRSKQTAAPTLAQKAIAYGIPGVQV-DGNDVLAVYAVTKEAVERARSGGGPTLIE 242 (341)
T ss_pred CCCEEEEEECCCCcc-ccchhhhhCCcCHHHHHhhCCCCEEEE-CCCCHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 89999887 344221 11111 112222222 4555543 33344333 44555555568899984
No 227
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=60.63 E-value=24 Score=29.97 Aligned_cols=49 Identities=18% Similarity=0.106 Sum_probs=38.3
Q ss_pred EEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCC
Q 015415 287 VTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTH 337 (407)
Q Consensus 287 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~ 337 (407)
++|..+ +....+++|.+.|++.||..+++|... .|++.+.|.+.++..+
T Consensus 3 itiy~~-p~C~t~rka~~~L~~~gi~~~~~~y~~-~~~s~~eL~~~l~~~g 51 (117)
T COG1393 3 ITIYGN-PNCSTCRKALAWLEEHGIEYTFIDYLK-TPPSREELKKILSKLG 51 (117)
T ss_pred EEEEeC-CCChHHHHHHHHHHHcCCCcEEEEeec-CCCCHHHHHHHHHHcC
Confidence 344433 344588999999999999999999776 6888888888877665
No 228
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=59.87 E-value=56 Score=34.68 Aligned_cols=112 Identities=21% Similarity=0.235 Sum_probs=59.7
Q ss_pred hhhCCCceEeccchhHHHHHHHHHHHhc-----CCeeEEEecc-hhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe--
Q 015415 129 DKYGDLRVLDTPIAENSFTGMGIGAAMT-----GLRPIVEGMN-MGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-- 200 (407)
Q Consensus 129 ~~fgp~R~i~~GIaE~~~vg~A~GlA~~-----G~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-- 200 (407)
...+|.|.+|.|- .+.||+..|.|++ =-+.+++... +.|=.-++| + ..+++. ++||+++.
T Consensus 416 ~~~~Pr~rLDaGt--fgTMGVG~Gfalaaa~~~P~~~V~~veGDsaFGfSaME-~-ET~vR~--------~Lpvv~vV~N 483 (571)
T KOG1185|consen 416 PPRGPRRRLDAGT--FGTMGVGLGFALAAALAAPDRKVVCVEGDSAFGFSAME-L-ETFVRY--------KLPVVIVVGN 483 (571)
T ss_pred cCCCcccccCCcc--ccccccchhHHHHHHhhCCCCeEEEEecCcccCcchhh-H-HHHHHh--------cCCeEEEEec
Confidence 3445999999983 3444444444433 1233333333 222222333 1 233433 89988776
Q ss_pred cCCCCCCC--CcCcc-------c----------hHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhc-CCCEEE
Q 015415 201 PGGVGRQL--GAEHS-------Q----------RLESYFQSIPGIQMVACSTPYNAKGLMKAAIRS-ENPVIL 253 (407)
Q Consensus 201 ~~G~~~~~--G~tHs-------q----------~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~-~~Pv~i 253 (407)
.+|.+|.| |.+.- + .+|-++..+ |.+=+.-.+++|+...++++.+. +.|++|
T Consensus 484 N~Giyg~d~~~~~~I~e~~~~~~~p~~~l~~~~rY~~v~ka~-G~kG~~v~t~~el~~~l~~a~q~~~~psvI 555 (571)
T KOG1185|consen 484 NNGIYGLDDDGWKQISEQDPTLDLPPTALLANTRYDKVAKAF-GGKGYFVSTVEELLAALQQACQDTDKPSVI 555 (571)
T ss_pred CCcccccCcccHHHHhhcCcccCCCcccccccccHHHHHHHc-CCCceeeCCHHHHHHHHHHHHhcCCCCeEE
Confidence 46776533 22110 1 012122222 33345566999999999999986 489887
No 229
>COG0680 HyaD Ni,Fe-hydrogenase maturation factor [Energy production and conversion]
Probab=59.76 E-value=23 Score=31.85 Aligned_cols=57 Identities=21% Similarity=0.193 Sum_probs=36.5
Q ss_pred CcEEEEEechhH----HHHHHHHHHHhhCCC---CceEEEecccccCchhhHHHHHhcCCcEEEEecC
Q 015415 285 EHVTILTYSRMR----YHVMQAAKTLVNKGY---DPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEEC 345 (407)
Q Consensus 285 ~dv~Iia~G~~~----~~al~Aa~~L~~~Gi---~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~ 345 (407)
..++|+++|+.+ ..-...+++|++..- +++|||.-+.-|. +...+..++++++||--
T Consensus 2 ~~ilIlG~GN~L~~DDG~Gv~vae~L~~~~~~~~~v~vid~Gt~~~~----l~~~l~~~d~vIIVDav 65 (160)
T COG0680 2 MRILILGVGNILMGDDGFGVRVAEKLKKRYKPPENVEVIDGGTAGPN----LLGLLAGYDPVIIVDAV 65 (160)
T ss_pred CeEEEEeeCCcccccCcccHHHHHHHHHhcCCCCCeEEEEcCCCcHH----HHHHhcCCCcEEEEEee
Confidence 357888888765 234566666766533 6789999997443 33445556667776643
No 230
>cd06062 H2MP_MemB-H2up Endopeptidases belonging to membrane-bound hydrogenases group. These hydrogenases transfer electrons from H2 to a cytochrome that is bound to a membrane-located complex coupling electron transfer to transmembrane proton translocation. Endopeptidase HybD from E. coli is well studied in this group. Maturation of [NiFe] hydrogenases include proteolytic processing of large subunit, assembly with other subunits, and formation of the nickel metallocenter. Hydrogenase maturation endopeptidase (HybD) cleaves a short C-terminal peptide after a His or an Arg residue in the large subunit (pre-HybC) of hydrogenase 2 (hyb operon) in E. coli. This cleavage is nickel dependent. A variety of endopeptidases belong to this group that are similar in function and sequence homology. They include such proteins as HynC, HoxM, and HupD.
Probab=58.84 E-value=28 Score=30.45 Aligned_cols=55 Identities=20% Similarity=0.245 Sum_probs=36.1
Q ss_pred EEEEEechhH----HHHHHHHHHHhhC---CCCceEEEecccccCchhhHHHHHhcCCcEEEEecC
Q 015415 287 VTILTYSRMR----YHVMQAAKTLVNK---GYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEEC 345 (407)
Q Consensus 287 v~Iia~G~~~----~~al~Aa~~L~~~---Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~ 345 (407)
++|+++|+.. .....+++.|++. .-++++++..+.- ..+...+.+++++++||-.
T Consensus 1 ilV~GiGN~l~gDDG~G~~va~~L~~~~~~~~~v~vi~~~~~~----~~l~~~l~~~d~viiVDA~ 62 (146)
T cd06062 1 ILVLGIGNILLADEGIGVHAVERLEENYSFPENVELIDGGTLG----LELLPYIEEADRLIIVDAV 62 (146)
T ss_pred CEEEEECccccccCcHHHHHHHHHHHhcCCCCCeEEEECCCCH----HHHHHHHhcCCEEEEEEcc
Confidence 3678888776 3456677777654 3358889888852 2233445677888888773
No 231
>PLN02573 pyruvate decarboxylase
Probab=58.72 E-value=71 Score=34.53 Aligned_cols=110 Identities=11% Similarity=-0.013 Sum_probs=61.7
Q ss_pred CCceEeccchhHH----HHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCC
Q 015415 133 DLRVLDTPIAENS----FTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVG 205 (407)
Q Consensus 133 p~R~i~~GIaE~~----~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~ 205 (407)
+.+|+..+- .+ .+..|+|++++- -|+++....- .|.+-+ ..|- .+... ++|+++++ .+|.+
T Consensus 418 ~~~~~~~~~--~gsmG~glpaaiGa~lA~p~r~vv~i~GDG~f~m~~-~EL~-Ta~r~--------~lpvv~vV~NN~~y 485 (578)
T PLN02573 418 GCGYEFQMQ--YGSIGWSVGATLGYAQAAPDKRVIACIGDGSFQVTA-QDVS-TMIRC--------GQKSIIFLINNGGY 485 (578)
T ss_pred CCeEEeecc--hhhhhhhhhHHHHHHHhCCCCceEEEEeccHHHhHH-HHHH-HHHHc--------CCCCEEEEEeCCce
Confidence 456766542 33 344577777663 3455554443 344433 3342 33433 78887776 44322
Q ss_pred CC----C----CcCccchHHHHHccCC---C-cEEEeeCCHHHHHHHHHHHHh--cCCCEEEe
Q 015415 206 RQ----L----GAEHSQRLESYFQSIP---G-IQMVACSTPYNAKGLMKAAIR--SENPVILF 254 (407)
Q Consensus 206 ~~----~----G~tHsq~~ea~~~~iP---g-l~V~~P~d~~e~~~~~~~a~~--~~~Pv~ir 254 (407)
+. . +..+.-.+..+...+- | +.-....+++|+..++++|+. .++|.+|-
T Consensus 486 g~~~~~~~~~~~~~~~~d~~~lA~a~G~~~g~~~~~~V~~~~eL~~al~~a~~~~~~~p~lie 548 (578)
T PLN02573 486 TIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTAKVRTEEELIEAIATATGEKKDCLCFIE 548 (578)
T ss_pred eEEEeecccCccccCCCCHHHHHHHhcCcCCceeEEEecCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 21 0 1111112334555542 3 777888999999999999984 58899884
No 232
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=58.68 E-value=57 Score=25.03 Aligned_cols=73 Identities=25% Similarity=0.203 Sum_probs=44.0
Q ss_pred ecCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHh-cCCcEEEEecCccccchHHHHHHHH
Q 015415 282 RPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIK-KTHRVLIVEECMRTGGIGASLTAAI 359 (407)
Q Consensus 282 ~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~-~~~~vvvvEe~~~~GGlGs~I~~~l 359 (407)
++..+++|.+ -+....+.+|.+.|++.|++.+.+|+..- -+.+.+.+.-. .+=.+++++.. ..||+ .+|.++|
T Consensus 5 ~~~~~V~ly~-~~~Cp~C~~ak~~L~~~gi~y~~idi~~~--~~~~~~~~~~g~~~vP~i~i~g~-~igG~-~~l~~~l 78 (79)
T TIGR02190 5 RKPESVVVFT-KPGCPFCAKAKATLKEKGYDFEEIPLGND--ARGRSLRAVTGATTVPQVFIGGK-LIGGS-DELEAYL 78 (79)
T ss_pred CCCCCEEEEE-CCCCHhHHHHHHHHHHcCCCcEEEECCCC--hHHHHHHHHHCCCCcCeEEECCE-EEcCH-HHHHHHh
Confidence 3445677665 47778899999999999999999997531 11222322211 12234556554 46886 4555544
No 233
>PRK10853 putative reductase; Provisional
Probab=57.88 E-value=20 Score=30.43 Aligned_cols=43 Identities=19% Similarity=0.142 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCC
Q 015415 294 RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTH 337 (407)
Q Consensus 294 ~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~ 337 (407)
+....+++|.+-|++.|+.++++|+.. .|++.+.|.+.+.+.+
T Consensus 8 ~~C~t~rkA~~~L~~~~i~~~~~d~~k-~p~s~~eL~~~l~~~g 50 (118)
T PRK10853 8 KNCDTIKKARRWLEAQGIDYRFHDYRV-DGLDSELLQGFIDELG 50 (118)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEeehcc-CCcCHHHHHHHHHHcC
Confidence 355778889999999999999999887 7999999888776543
No 234
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=57.77 E-value=87 Score=26.45 Aligned_cols=76 Identities=11% Similarity=0.063 Sum_probs=46.3
Q ss_pred EEEeeCCHHHHHHHHHHHHhcCCCEEEeeccccccCCCCCCCcccccc---CCceEEeecCCcEEEEEechhHHHHHHHH
Q 015415 227 QMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICN---LEEAEMVRPGEHVTILTYSRMRYHVMQAA 303 (407)
Q Consensus 227 ~V~~P~d~~e~~~~~~~a~~~~~Pv~ir~~r~~y~~~~~v~~~~~~~~---~Gk~~vl~eG~dv~Iia~G~~~~~al~Aa 303 (407)
.|+.|.+.+|+..++++|.+++.|+.++-..-.+. .....+....+. +.+...+.+....+.+..|.......+..
T Consensus 3 ~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~-~~~~~~~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~~~l 81 (139)
T PF01565_consen 3 AVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWT-GQSSDEGGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLYEAL 81 (139)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSS-STTSSTTEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcc-cccccCCcEEEeeccccccccccccceeEEEeccccchhccccc
Confidence 48999999999999999999999999974322111 001111111111 22222233445677777787777766544
No 235
>cd06063 H2MP_Cyano-H2up This group of endopeptidases include HupW enzymes that are specific to the cyanobacterial hydrogenase and are involved in the C-terminal cleavage of the hydrogenase large subunit precursor protein. Cyanobacterial nickel-iron (NiFe)-hydrogenases are found exclusively in the N2-fixing strains and are encoded by hup (hydrogen uptake) genes. These uptake hydrogenases are heterodimers with a large (hupL) and small subunit (hupS) and catalyze the consumption of the H2 produced during N2 fixation. Sequence similarity shows that the putative metal-binding resides are well conserved in this group of hydrogen maturation proteases. This group also includes such proteins as the hydrogenase III from Aquifex aeolicus.
Probab=57.59 E-value=27 Score=30.52 Aligned_cols=55 Identities=9% Similarity=0.083 Sum_probs=35.0
Q ss_pred EEEEEechhH----HHHHHHHHHHhhCCC--CceEEEecccccCchhhHHHHHhcCCcEEEEecC
Q 015415 287 VTILTYSRMR----YHVMQAAKTLVNKGY--DPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEEC 345 (407)
Q Consensus 287 v~Iia~G~~~----~~al~Aa~~L~~~Gi--~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~ 345 (407)
++|+++|+.. .....+++.|++... +++++|..+.-+ .+...+.+++++++||-.
T Consensus 1 ~lVlGiGN~L~~DDG~G~~v~~~L~~~~~~~~v~~id~gt~~~----~l~~~l~~~d~vIiVDA~ 61 (146)
T cd06063 1 LTIIGCGNLNRGDDGVGPILIRRLQAYLLPPHVRLVDCGTAGM----EVMFRARGAKQLIIIDAS 61 (146)
T ss_pred CEEEEECCcccccCcHHHHHHHHHhhcCCCCCeEEEECCCCHH----HHHHHhcCCCEEEEEEeC
Confidence 3677888766 345677777766532 478888888632 233445567777777763
No 236
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=57.40 E-value=34 Score=25.94 Aligned_cols=56 Identities=13% Similarity=0.152 Sum_probs=34.7
Q ss_pred cEEEEEech-hHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHh-cCCcEEEEec
Q 015415 286 HVTILTYSR-MRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIK-KTHRVLIVEE 344 (407)
Q Consensus 286 dv~Iia~G~-~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~-~~~~vvvvEe 344 (407)
++.|++.+. ....|++.++.|+++|+.+.+... . +.++ +.+..+-+ +...++++.+
T Consensus 3 ~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~-~-~~~~-~~~~~a~~~~~~~~i~i~~ 60 (91)
T cd00859 3 DVYVVPLGEGALSEALELAEQLRDAGIKAEIDYG-G-RKLK-KQFKYADRSGARFAVILGE 60 (91)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecC-C-CCHH-HHHHHHHHcCCCEEEEEcH
Confidence 577887776 456799999999999998876432 2 2333 33333222 2345566654
No 237
>PRK12753 transketolase; Reviewed
Probab=57.10 E-value=64 Score=35.65 Aligned_cols=74 Identities=12% Similarity=0.158 Sum_probs=42.2
Q ss_pred HHHHHHHHhhhhhchhcCCccccc-EEEEe-cCCC--CCCCCcCccchHHHHHccCCCcEEEeeCC---HHHHHHHHHHH
Q 015415 172 LAFNQISNNCGMLHYTSGGQFTIP-IVIRG-PGGV--GRQLGAEHSQRLESYFQSIPGIQMVACST---PYNAKGLMKAA 244 (407)
Q Consensus 172 ra~dqi~~~~a~~~~~~gg~~~lp-vvi~~-~~G~--~~~~G~tHsq~~ea~~~~iPgl~V~~P~d---~~e~~~~~~~a 244 (407)
..+|.+. .++.+ ++| ++++. .++. .+..+......+...++.. ||.++.+.| ..++..+++.|
T Consensus 162 ~~~EA~~-~A~~~--------kL~nLi~ivd~N~~~i~~~~~~~~~~~~~~~f~a~-Gw~~~~~vDGhD~~~i~~a~~~a 231 (663)
T PRK12753 162 ISHEVCS-LAGTL--------GLGKLIGFYDHNGISIDGETEGWFTDDTAKRFEAY-HWHVIHEIDGHDPQAIKEAILEA 231 (663)
T ss_pred HHHHHHH-HHHHH--------CCCCEEEEEECCCCcCCCChhhhcChhHHHHHHHc-CCeEEceeCCCCHHHHHHHHHHH
Confidence 5677663 45554 787 55454 4443 2322222223334567776 888885444 45556666666
Q ss_pred Hhc-CCCEEEee
Q 015415 245 IRS-ENPVILFE 255 (407)
Q Consensus 245 ~~~-~~Pv~ir~ 255 (407)
... ++|++|..
T Consensus 232 ~~~~~~P~~I~~ 243 (663)
T PRK12753 232 QSVKDKPSLIIC 243 (663)
T ss_pred HHCCCCeEEEEE
Confidence 554 67999863
No 238
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=56.95 E-value=57 Score=33.27 Aligned_cols=72 Identities=19% Similarity=0.307 Sum_probs=41.4
Q ss_pred HHHHHHHHhhhhhchhcCCcccccEEEEec-CCCCCCCCc-Cc-cc---hHHHHHccCCCcEEEeeCCHHHHHHHHHHHH
Q 015415 172 LAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGVGRQLGA-EH-SQ---RLESYFQSIPGIQMVACSTPYNAKGLMKAAI 245 (407)
Q Consensus 172 ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~~~~~G~-tH-sq---~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~ 245 (407)
..+|-+ |.++.+ ++|+++++. ++.. .+. +. +. .+-.-...+|++. +--.|..++..+++.|.
T Consensus 176 ~~~Eal-n~A~~~--------~lPvvfvveNN~~a--ist~~~~~~~~~~~~~~~~~~p~~~-VDG~D~~av~~a~~~A~ 243 (362)
T PLN02269 176 QLFEAL-NIAALW--------DLPVIFVCENNHYG--MGTAEWRAAKSPAYYKRGDYVPGLK-VDGMDVLAVKQACKFAK 243 (362)
T ss_pred HHHHHH-HHhhcc--------CcCEEEEEeCCCEe--ccCchhhhccchHHHHhhcCCCeEE-ECCCCHHHHHHHHHHHH
Confidence 445655 345544 899999884 4421 121 11 11 1111123477774 47777888888887776
Q ss_pred hc---CCCEEEee
Q 015415 246 RS---ENPVILFE 255 (407)
Q Consensus 246 ~~---~~Pv~ir~ 255 (407)
+. .+|++|-.
T Consensus 244 ~~aR~~gP~lIe~ 256 (362)
T PLN02269 244 EHALSNGPIVLEM 256 (362)
T ss_pred HHHHhCCCEEEEE
Confidence 42 78999853
No 239
>PRK10264 hydrogenase 1 maturation protease; Provisional
Probab=56.76 E-value=30 Score=32.14 Aligned_cols=56 Identities=13% Similarity=0.168 Sum_probs=38.9
Q ss_pred CcEEEEEechhH----HHHHHHHHHHhhC---CCCceEEEecccccCchhhHHHHHhcCCcEEEEec
Q 015415 285 EHVTILTYSRMR----YHVMQAAKTLVNK---GYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEE 344 (407)
Q Consensus 285 ~dv~Iia~G~~~----~~al~Aa~~L~~~---Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe 344 (407)
.+++|+++|+.+ .....+++.|+++ .-+++++|..+.-+ .+...+.+.+++++||-
T Consensus 4 ~rilVlGiGN~L~gDDGvG~~va~~L~~~~~~~~~V~vid~Gt~g~----~ll~~i~~~d~vIiVDA 66 (195)
T PRK10264 4 QRVVVMGLGNLLWADEGFGVRVAERLYAHYHWPEYVEIVDGGTQGL----NLLGYVESASHLLILDA 66 (195)
T ss_pred CCEEEEEeCccccccCcHHHHHHHHHHhhcCCCCCeEEEECCCCHH----HHHHHHcCCCEEEEEEC
Confidence 468899999877 3567788888654 23488999888632 23355666777777775
No 240
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=56.74 E-value=78 Score=34.08 Aligned_cols=110 Identities=12% Similarity=0.128 Sum_probs=61.6
Q ss_pred CCceEeccc--hhHHHHHHHHHHHhcC-CeeEEEecch-hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCC
Q 015415 133 DLRVLDTPI--AENSFTGMGIGAAMTG-LRPIVEGMNM-GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQ 207 (407)
Q Consensus 133 p~R~i~~GI--aE~~~vg~A~GlA~~G-~rp~~~t~~~-~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~ 207 (407)
|.+|+..+- +=-..+..|+|++++. -|+++....- .|++-+-| |- .+... ++|++++. .+|.++.
T Consensus 408 ~~~~~~~~~~g~mG~glpaaiGa~lA~p~~~Vv~i~GDG~f~m~~~e-L~-Ta~~~--------~l~i~~vV~NN~~y~~ 477 (566)
T PRK07282 408 ERQLVTSGGLGTMGFGIPAAIGAKIANPDKEVILFVGDGGFQMTNQE-LA-ILNIY--------KVPIKVVMLNNHSLGM 477 (566)
T ss_pred CCcEecCCccccccchhhHhheeheecCCCcEEEEEcchhhhccHHH-HH-HHHHh--------CCCeEEEEEeCCCchH
Confidence 788887641 2233556677777774 2555554443 34443323 32 23322 78877765 3332211
Q ss_pred -----------CCc-C---ccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 208 -----------LGA-E---HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 208 -----------~G~-t---Hsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
.+. . ..-.+..+...+ |..-+.-.+++|+..++. ++..++|++|-
T Consensus 478 i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~-~~~~~~p~lIe 537 (566)
T PRK07282 478 VRQWQESFYEGRTSESVFDTLPDFQLMAQAY-GIKHYKFDNPETLAQDLE-VITEDVPMLIE 537 (566)
T ss_pred HHHHHHHHhCCCcccccCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHH-HhcCCCCEEEE
Confidence 111 1 111233444444 777788899999999997 45668899884
No 241
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=56.71 E-value=38 Score=28.43 Aligned_cols=58 Identities=12% Similarity=0.031 Sum_probs=38.8
Q ss_pred CcEEEEEec--h-hHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHH-hcCCcEEEEecCc
Q 015415 285 EHVTILTYS--R-MRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSI-KKTHRVLIVEECM 346 (407)
Q Consensus 285 ~dv~Iia~G--~-~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~-~~~~~vvvvEe~~ 346 (407)
.++.|++.+ . ....+++.++.|+++|+.+.+ |.. +.+... +..+- .+...++++.+..
T Consensus 27 ~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~-d~~--~sl~kq-lk~A~k~g~~~~iiiG~~e 88 (121)
T cd00858 27 IKVAVLPLVKRDELVEIAKEISEELRELGFSVKY-DDS--GSIGRR-YARQDEIGTPFCVTVDFDT 88 (121)
T ss_pred cEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEE-eCC--CCHHHH-HHHhHhcCCCEEEEECcCc
Confidence 478888888 4 457889999999999999888 333 445433 33322 2345677777654
No 242
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=56.14 E-value=22 Score=29.49 Aligned_cols=43 Identities=23% Similarity=0.167 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCC
Q 015415 294 RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTH 337 (407)
Q Consensus 294 ~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~ 337 (407)
+....+.+|.+.|++.|+..+++|+.. .|++.+.|.+.+++.+
T Consensus 7 ~~C~~crka~~~L~~~~i~~~~~di~~-~p~s~~eL~~~l~~~g 49 (105)
T cd03035 7 KNCDTVKKARKWLEARGVAYTFHDYRK-DGLDAATLERWLAKVG 49 (105)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEeccc-CCCCHHHHHHHHHHhC
Confidence 455778899999999999999999886 7999999988887654
No 243
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=56.05 E-value=21 Score=36.78 Aligned_cols=53 Identities=23% Similarity=0.364 Sum_probs=44.1
Q ss_pred cEEEE---EechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEE
Q 015415 286 HVTIL---TYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLI 341 (407)
Q Consensus 286 dv~Ii---a~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvv 341 (407)
.++|+ .||+.-..|...++-|.+.|+++.++++..- |.+.|.+.+.+++.+++
T Consensus 248 ~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~---~~~eI~~~i~~a~~~vv 303 (388)
T COG0426 248 KVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDA---DPSEIVEEILDAKGLVV 303 (388)
T ss_pred eEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccC---CHHHHHHHHhhcceEEE
Confidence 46666 6888889999999999999999999999886 77777777877776554
No 244
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=54.01 E-value=28 Score=26.16 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHh-cCCcEEEEecCccccchH
Q 015415 295 MRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIK-KTHRVLIVEECMRTGGIG 352 (407)
Q Consensus 295 ~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~-~~~~vvvvEe~~~~GGlG 352 (407)
....+.+|.+.|++.|+..+.+|+.. .|-..+.+.+ .. .+=.++++++....+|+-
T Consensus 8 ~Cp~C~~ak~~L~~~~i~~~~~di~~-~~~~~~~~~~-~g~~~vP~v~~~g~~~~~G~~ 64 (72)
T TIGR02194 8 NCVQCKMTKKALEEHGIAFEEINIDE-QPEAIDYVKA-QGFRQVPVIVADGDLSWSGFR 64 (72)
T ss_pred CCHHHHHHHHHHHHCCCceEEEECCC-CHHHHHHHHH-cCCcccCEEEECCCcEEeccC
Confidence 44678888888999999999999875 2222222322 12 122457775543456653
No 245
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=53.34 E-value=32 Score=31.04 Aligned_cols=53 Identities=17% Similarity=0.229 Sum_probs=36.5
Q ss_pred cCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEe
Q 015415 283 PGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVE 343 (407)
Q Consensus 283 eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvE 343 (407)
+|++++||+.|.|+... +++.|.++|.++.+++-++ +.+.+.+++.+-||+.-
T Consensus 43 ~gk~vlViG~G~~~G~~--~a~~L~~~g~~V~v~~r~~------~~l~~~l~~aDiVIsat 95 (168)
T cd01080 43 AGKKVVVVGRSNIVGKP--LAALLLNRNATVTVCHSKT------KNLKEHTKQADIVIVAV 95 (168)
T ss_pred CCCEEEEECCcHHHHHH--HHHHHhhCCCEEEEEECCc------hhHHHHHhhCCEEEEcC
Confidence 46789999999886653 4456777888888877432 45667787777555443
No 246
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=53.14 E-value=56 Score=35.21 Aligned_cols=143 Identities=13% Similarity=0.097 Sum_probs=75.9
Q ss_pred HHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccc--hhHHHHHHHHHHHhcC-CeeEEEecch-h
Q 015415 93 LREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPI--AENSFTGMGIGAAMTG-LRPIVEGMNM-G 168 (407)
Q Consensus 93 ~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GI--aE~~~vg~A~GlA~~G-~rp~~~t~~~-~ 168 (407)
+-+.|.+.+.++ .+++ .|.+ +. ...+.-.- |.+|+..+- +=-..+++|.|++++. -++++++..- .
T Consensus 390 ~~~~l~~~l~~~-~~vv--~~~~-----~~-~~~~~~~~-~~~~~~~~~~gsmG~~lp~aiGa~la~p~~~vv~i~GDG~ 459 (569)
T PRK08327 390 LSYCLGEVADEY-DAIV--TEYP-----FV-PRQARLNK-PGSYFGDGSAGGLGWALGAALGAKLATPDRLVIATVGDGS 459 (569)
T ss_pred HHHHHHHhcCcc-ceEE--eccH-----HH-HHhcCccC-CCCeeeCCCCCCCCcchHHHHHHhhcCCCCeEEEEecCcc
Confidence 556666666644 4444 3332 11 12232233 678887642 3445567777877774 3566664443 3
Q ss_pred HHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCC----------CC------cC------ccchHHHHHccCCC
Q 015415 169 FLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQ----------LG------AE------HSQRLESYFQSIPG 225 (407)
Q Consensus 169 f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~----------~G------~t------Hsq~~ea~~~~iPg 225 (407)
|.+-..++..+.+... ++|++++. .++.++. .| .. ..-.+..+..++ |
T Consensus 460 f~~~~~e~~l~ta~~~--------~l~~~ivv~NN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G 530 (569)
T PRK08327 460 FIFGVPEAAHWVAERY--------GLPVLVVVFNNGGWLAVKEAVLEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAF-G 530 (569)
T ss_pred eeecCcHHHHHHHHHh--------CCCEEEEEEeCcccccchhHHhhhCcccccccccccccccCCCCCCHHHHHHhC-C
Confidence 3333334433333333 78877776 4432211 01 00 001222344443 3
Q ss_pred cEEEeeCCHHHHHHHHHHHHhc----CCCEEEe
Q 015415 226 IQMVACSTPYNAKGLMKAAIRS----ENPVILF 254 (407)
Q Consensus 226 l~V~~P~d~~e~~~~~~~a~~~----~~Pv~ir 254 (407)
+..+...+++|+...++++++. ++|++|-
T Consensus 531 ~~~~~v~~~~el~~al~~a~~~~~~~~gp~lie 563 (569)
T PRK08327 531 GYGERVEDPEELKGALRRALAAVRKGRRSAVLD 563 (569)
T ss_pred CCceEeCCHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 4455567999999999999876 6799884
No 247
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=52.75 E-value=76 Score=34.99 Aligned_cols=74 Identities=14% Similarity=0.256 Sum_probs=41.9
Q ss_pred HHHHHHHHhhhhhchhcCCccccc-EEEEec-CCCCCCCCcCc---cchHHHHHccCCCcEEEeeC---CHHHHHHHHHH
Q 015415 172 LAFNQISNNCGMLHYTSGGQFTIP-IVIRGP-GGVGRQLGAEH---SQRLESYFQSIPGIQMVACS---TPYNAKGLMKA 243 (407)
Q Consensus 172 ra~dqi~~~~a~~~~~~gg~~~lp-vvi~~~-~G~~~~~G~tH---sq~~ea~~~~iPgl~V~~P~---d~~e~~~~~~~ 243 (407)
..+|.+. .++.+ ++| ++++.. ++. .-+|++. ...+...+++. ||.++... |..++..++..
T Consensus 158 ~~~EA~~-~A~~~--------~L~nLi~ivd~N~~-~i~~~~~~~~~~~~~~~~~a~-Gw~~~~v~DG~D~~ai~~A~~~ 226 (653)
T TIGR00232 158 ISYEVAS-LAGHL--------KLGKLIVLYDSNRI-SIDGAVDGSFTEDVAKRFEAY-GWEVLEVEDGHDLAAIDAAIEE 226 (653)
T ss_pred HHHHHHH-HHHHh--------CCCcEEEEEeCCCe-eeccccccccCccHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHH
Confidence 5677663 45543 888 444443 443 2233332 23334567776 88888763 45556566665
Q ss_pred HHhc-CCCEEEeec
Q 015415 244 AIRS-ENPVILFEH 256 (407)
Q Consensus 244 a~~~-~~Pv~ir~~ 256 (407)
+-+. ++|++|...
T Consensus 227 a~~~~~~P~~I~~~ 240 (653)
T TIGR00232 227 AKASKDKPTLIEVT 240 (653)
T ss_pred HHhCCCCCEEEEEE
Confidence 5544 379998643
No 248
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=52.11 E-value=3.3e+02 Score=29.17 Aligned_cols=116 Identities=15% Similarity=0.171 Sum_probs=68.5
Q ss_pred hhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCC--
Q 015415 129 DKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVG-- 205 (407)
Q Consensus 129 ~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~-- 205 (407)
++. .=|||++- .||+++=.|-.++.- |..-++...+...+.-++--+.|. .++ .=|+++++-+...
T Consensus 48 qal-GIk~I~~R-nEqaA~yAA~A~gyLt~kpGV~lVvsGPGl~hal~gv~NA--~~n-------~wPll~IgGsa~~~~ 116 (571)
T KOG1185|consen 48 QAL-GIKFIGTR-NEQAAVYAASAYGYLTGKPGVLLVVSGPGLTHALAGVANA--QMN-------CWPLLLIGGSASTLL 116 (571)
T ss_pred HHc-CCeEeecc-cHHHHHHHHHHhhhhcCCCeEEEEecCChHHHHHHHhhhh--hhc-------cCcEEEEecccchhh
Confidence 455 56999996 999998887777765 443333333445566666666542 221 3488877432111
Q ss_pred CCCCcCccchHH--HHHccCCCcEEEeeCCHHHHHHHHHHHHh-----cCCCEEEeeccc
Q 015415 206 RQLGAEHSQRLE--SYFQSIPGIQMVACSTPYNAKGLMKAAIR-----SENPVILFEHVL 258 (407)
Q Consensus 206 ~~~G~tHsq~~e--a~~~~iPgl~V~~P~d~~e~~~~~~~a~~-----~~~Pv~ir~~r~ 258 (407)
-+-|.- |.++ .++|..--+ +..|.+..+.-..++.|++ .++|+|+-.+..
T Consensus 117 ~~rGaf--Qe~dQvel~rp~~K~-~~r~~~~~~I~~~i~kA~r~a~~G~PG~~yvD~P~d 173 (571)
T KOG1185|consen 117 ENRGAF--QELDQVELFRPLCKF-VARPTSVRDIPPTIRKAVRAAMSGRPGPVYVDLPAD 173 (571)
T ss_pred hccccc--ccccHHhhhhhhhhh-ccCCCChhhccHHHHHHHHHHhcCCCCceEEecccc
Confidence 122332 2222 445543333 5678888887777777776 378999976654
No 249
>PRK10026 arsenate reductase; Provisional
Probab=51.92 E-value=35 Score=30.04 Aligned_cols=43 Identities=14% Similarity=0.106 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCC
Q 015415 294 RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTH 337 (407)
Q Consensus 294 ~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~ 337 (407)
+....+++|.+.|++.|++++++|+.. .|++.+.|.+.+++.+
T Consensus 10 p~Cst~RKA~~wL~~~gi~~~~~d~~~-~ppt~~eL~~~l~~~g 52 (141)
T PRK10026 10 PACGTSRNTLEMIRNSGTEPTIIHYLE-TPPTRDELVKLIADMG 52 (141)
T ss_pred CCCHHHHHHHHHHHHCCCCcEEEeeeC-CCcCHHHHHHHHHhCC
Confidence 466788999999999999999999987 7999999888887654
No 250
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=51.87 E-value=23 Score=29.56 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCC
Q 015415 294 RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTH 337 (407)
Q Consensus 294 ~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~ 337 (407)
+....+++|.+.|++.|++++.+|+.. .|++.+.|.+.+..++
T Consensus 7 ~~C~t~rkA~~~L~~~~i~~~~~di~~-~~~t~~el~~~l~~~~ 49 (112)
T cd03034 7 PRCSKSRNALALLEEAGIEPEIVEYLK-TPPTAAELRELLAKLG 49 (112)
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEeccc-CCcCHHHHHHHHHHcC
Confidence 456778889999999999999999876 7899988888877655
No 251
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=51.70 E-value=83 Score=31.77 Aligned_cols=61 Identities=15% Similarity=0.316 Sum_probs=32.6
Q ss_pred cccEEEEe-cCC--CCCCC-CcCccchHH--HHHccCCCcEEEeeCCHHHHHHHHHHHH----hcCCCEEEe
Q 015415 193 TIPIVIRG-PGG--VGRQL-GAEHSQRLE--SYFQSIPGIQMVACSTPYNAKGLMKAAI----RSENPVILF 254 (407)
Q Consensus 193 ~lpvvi~~-~~G--~~~~~-G~tHsq~~e--a~~~~iPgl~V~~P~d~~e~~~~~~~a~----~~~~Pv~ir 254 (407)
++|+++++ .++ .+... ..+....+. +-.-.+|++.| .=.|..++...++.|+ ..++|++|-
T Consensus 185 ~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~V-dg~d~~av~~a~~~A~~~ar~~~gP~lIe 255 (341)
T CHL00149 185 KLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEV-DGMDVLAVREVAKEAVERARQGDGPTLIE 255 (341)
T ss_pred CCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEE-eCCCHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 89999887 344 22211 011111222 22236787755 4456665555555554 457899984
No 252
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=51.64 E-value=33 Score=27.00 Aligned_cols=58 Identities=21% Similarity=0.161 Sum_probs=38.4
Q ss_pred cEEEEEech----hHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHH-HhcCCcEEEEecCc
Q 015415 286 HVTILTYSR----MRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNS-IKKTHRVLIVEECM 346 (407)
Q Consensus 286 dv~Iia~G~----~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~-~~~~~~vvvvEe~~ 346 (407)
++.|+..|. ....|.+.++.|++.|+.+.+-+ .-..+... +..+ ..+..-++++-+..
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~--~~~~~~k~-~~~a~~~g~p~~iiiG~~e 63 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDD--SDKSLGKQ-IKYADKLGIPFIIIIGEKE 63 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEES--SSSTHHHH-HHHHHHTTESEEEEEEHHH
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEC--CCCchhHH-HHHHhhcCCeEEEEECchh
Confidence 467888887 45778999999999998887765 33344433 4333 33456677776543
No 253
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=51.64 E-value=23 Score=29.69 Aligned_cols=43 Identities=19% Similarity=0.177 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCC
Q 015415 294 RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTH 337 (407)
Q Consensus 294 ~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~ 337 (407)
+....+++|.+.|++.|++++.+|+.. .|++.+.|.+.++..+
T Consensus 7 ~~C~t~rkA~~~L~~~~i~~~~~di~~-~p~t~~el~~~l~~~g 49 (114)
T TIGR00014 7 PRCSKSRNTLALLEDKGIEPEVVKYLK-NPPTKSELEAIFAKLG 49 (114)
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEeccC-CCcCHHHHHHHHHHcC
Confidence 456788899999999999999999886 7999999888887654
No 254
>cd00518 H2MP Hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). These enzymes belong to the peptidase family M52. Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE, the large subunit of hydrogenase 3. This cleavage is nickel dependent. This CD also includes such hydrogenase-processing proteins as HydD, HupW, and HoxW, as well as, proteins of the F420-reducing hydrogenase of methanogens (e.g., FrcD). Also included, is the Pyrococcus furiosus FrxA protein, a bifunctional endopeptidase/ sulfhydrogenase found in NADP-reducing hyperthermophiles.The Pyrococcus FrxA is not related to those found in Helicobacter pylori.
Probab=51.56 E-value=38 Score=29.21 Aligned_cols=53 Identities=23% Similarity=0.198 Sum_probs=34.7
Q ss_pred EEEechhH----HHHHHHHHHHhhCC--CCceEEEecccccCchhhHHHHHhcCCcEEEEecC
Q 015415 289 ILTYSRMR----YHVMQAAKTLVNKG--YDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEEC 345 (407)
Q Consensus 289 Iia~G~~~----~~al~Aa~~L~~~G--i~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~ 345 (407)
|+++|+.. .....++++|++.. -+++++|..+. ++ .+...+++.+++++||-.
T Consensus 2 ViGiGN~l~~DDGvG~~v~~~L~~~~~~~~v~~id~gt~-~~---~l~~~l~~~d~viiVDA~ 60 (139)
T cd00518 2 VLGIGNPLRGDDGFGPAVAERLEERYLPPGVEVIDGGTL-GL---ELLDLLEGADRVIIVDAV 60 (139)
T ss_pred EEEECCcccccCcHHHHHHHHHHhcCCCCCeEEEECCCC-HH---HHHHHHhcCCeEEEEECc
Confidence 66777655 24567777777653 46888888886 22 234555567777777764
No 255
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=51.29 E-value=65 Score=32.40 Aligned_cols=79 Identities=15% Similarity=0.241 Sum_probs=55.9
Q ss_pred EEeecCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcC--CcEEEEecCccccchHHHHH
Q 015415 279 EMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKT--HRVLIVEECMRTGGIGASLT 356 (407)
Q Consensus 279 ~vl~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~--~~vvvvEe~~~~GGlGs~I~ 356 (407)
+.+-+|+.++++.+|..-..+-+. ++..|..|.++-..+=.-.+.|.|.+.+..+ +.|.+....+. .|+-+.+.
T Consensus 87 N~lePgd~vLv~~~G~wg~ra~D~---~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsS-TgV~q~~~ 162 (385)
T KOG2862|consen 87 NLLEPGDNVLVVSTGTWGQRAADC---ARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSS-TGVLQDLL 162 (385)
T ss_pred hhcCCCCeEEEEEechHHHHHHHH---HHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCcc-ccccchHH
Confidence 345688999999999988775554 4455889999976666678888898888876 45666666665 46656555
Q ss_pred HHHHh
Q 015415 357 AAITE 361 (407)
Q Consensus 357 ~~l~e 361 (407)
+...+
T Consensus 163 ~~~g~ 167 (385)
T KOG2862|consen 163 AISGE 167 (385)
T ss_pred HHHHH
Confidence 44444
No 256
>PRK10466 hybD hydrogenase 2 maturation endopeptidase; Provisional
Probab=51.17 E-value=52 Score=29.40 Aligned_cols=56 Identities=9% Similarity=0.117 Sum_probs=38.1
Q ss_pred cEEEEEechhH----HHHHHHHHHHhhC-C--CCceEEEecccccCchhhHHHHHhcCCcEEEEecC
Q 015415 286 HVTILTYSRMR----YHVMQAAKTLVNK-G--YDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEEC 345 (407)
Q Consensus 286 dv~Iia~G~~~----~~al~Aa~~L~~~-G--i~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~ 345 (407)
+++|+++|+.+ .....+++.|+++ + -+++++|..+.- ..+...+..++++|+||-.
T Consensus 2 ~ilVlGiGN~l~gDDGvG~~va~~L~~~~~~~~~v~vid~gt~~----~~ll~~l~~~d~vIiVDA~ 64 (164)
T PRK10466 2 RILVLGVGNILLTDEAIGVRIVEALEQRYILPDYVEILDGGTAG----MELLGDMANRDHLIIADAI 64 (164)
T ss_pred ceEEEEECchhhccCcHHHHHHHHHHHhcCCCCCeEEEeccccH----HHHHHHHhCCCEEEEEEec
Confidence 47889999877 3467788888653 3 358899988863 2233445567778888764
No 257
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=50.46 E-value=1.2e+02 Score=30.62 Aligned_cols=101 Identities=17% Similarity=0.270 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhcC----------------CeeEEEecchhHHH--HHHHHHHHhhhhhchhcCCccccc-EEEEe-cCC
Q 015415 144 NSFTGMGIGAAMTG----------------LRPIVEGMNMGFLL--LAFNQISNNCGMLHYTSGGQFTIP-IVIRG-PGG 203 (407)
Q Consensus 144 ~~~vg~A~GlA~~G----------------~rp~~~t~~~~f~~--ra~dqi~~~~a~~~~~~gg~~~lp-vvi~~-~~G 203 (407)
-.-+++|+|||++. .+.||- +.-.=++ .++|.+. .++.. ++. ++++. .++
T Consensus 114 GqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l-~GDGel~EG~~~EA~~-~A~~~--------~L~nLi~i~D~N~ 183 (332)
T PF00456_consen 114 GQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVL-MGDGELQEGSVWEAAS-LAGHY--------KLDNLIVIYDSNG 183 (332)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEE-EEHHHHHSHHHHHHHH-HHHHT--------T-TTEEEEEEEES
T ss_pred hcchhhHHHHHHHHHHHHhhhcccccccccceEEEE-ecCccccchhhHHHHH-HHHHh--------CCCCEEEEEecCC
Confidence 44567777777653 245554 3433344 5566653 34433 564 44444 344
Q ss_pred CCCCCCcCc---cchHHHHHccCCCcEEEee---CCHHHHHHHHHHHHhc-CCCEEEeec
Q 015415 204 VGRQLGAEH---SQRLESYFQSIPGIQMVAC---STPYNAKGLMKAAIRS-ENPVILFEH 256 (407)
Q Consensus 204 ~~~~~G~tH---sq~~ea~~~~iPgl~V~~P---~d~~e~~~~~~~a~~~-~~Pv~ir~~ 256 (407)
. .-+|.+. ...+..-+++. ||.|+.. .|.+++..++.+|-.. +.|++|...
T Consensus 184 ~-q~dg~~~~~~~~~~~~k~~a~-Gw~v~~v~dGhd~~~i~~A~~~a~~~~~kP~~Ii~~ 241 (332)
T PF00456_consen 184 I-QIDGPTDIVFSEDIAKKFEAF-GWNVIEVCDGHDVEAIYAAIEEAKASKGKPTVIIAR 241 (332)
T ss_dssp E-ETTEEGGGTHHSHHHHHHHHT-T-EEEEEEETTBHHHHHHHHHHHHHSTSS-EEEEEE
T ss_pred c-ccCCCcccccchHHHHHHHHh-hhhhcccccCcHHHHHHHHHHHHHhcCCCCceeecc
Confidence 3 2345443 22233566666 8999887 6777788888888765 789998644
No 258
>PRK09004 FMN-binding protein MioC; Provisional
Probab=50.43 E-value=1.3e+02 Score=26.35 Aligned_cols=83 Identities=13% Similarity=0.124 Sum_probs=46.9
Q ss_pred EEEechhHHHHHHHHHHH----hhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCccccch---HHHHHHHHHh
Q 015415 289 ILTYSRMRYHVMQAAKTL----VNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGI---GASLTAAITE 361 (407)
Q Consensus 289 Iia~G~~~~~al~Aa~~L----~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGl---Gs~I~~~l~e 361 (407)
.|-||+....+.+.|+.| ++.|+++.++++.. + +.+.+.+.++++=..+-.|-+ +..+.+.|.+
T Consensus 5 ~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~~~--------~-~~l~~~~~li~~~sT~G~Ge~p~~~~~f~~~L~~ 75 (146)
T PRK09004 5 TLISGSTLGGAEYVADHLAEKLEEAGFSTETLHGPL--------L-DDLSASGLWLIVTSTHGAGDLPDNLQPFFEELQE 75 (146)
T ss_pred EEEEEcCchHHHHHHHHHHHHHHHcCCceEEeccCC--------H-HHhccCCeEEEEECCCCCCCCChhHHHHHHHHHh
Confidence 345777777666666544 45699999877532 2 224456777777666544443 2344444544
Q ss_pred ccccCCCCCeEEeecCCCC
Q 015415 362 NFHDYLDAPIVCLSSQDVP 380 (407)
Q Consensus 362 ~~~~~~~~~v~~ig~~d~~ 380 (407)
........++..+|+-|..
T Consensus 76 ~~~~l~g~~~aVfGlGds~ 94 (146)
T PRK09004 76 QKPDLSQVRFAAIGIGSSE 94 (146)
T ss_pred cCCCCCCCEEEEEeecCCC
Confidence 3111123456677777753
No 259
>cd06070 H2MP_like-2 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=50.36 E-value=42 Score=29.10 Aligned_cols=52 Identities=12% Similarity=0.024 Sum_probs=35.0
Q ss_pred EEEEechhH----HHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecC
Q 015415 288 TILTYSRMR----YHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEEC 345 (407)
Q Consensus 288 ~Iia~G~~~----~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~ 345 (407)
+|+++|+.. .....+++.|+++ ++++++..+. + ..+...+.+++++++||-.
T Consensus 1 lVlGiGN~l~~DDg~G~~v~~~L~~~--~v~vi~~g~~-~---~~ll~~i~~~d~viiVDA~ 56 (140)
T cd06070 1 LIIGVGNRLYGDDGFGSCLAEALEQC--GAPVFDGGLD-G---FGLLSHLENYDIVIFIDVA 56 (140)
T ss_pred CEEEECchhcccCcHHHHHHHHHhhC--CCEEEECCCc-H---HHHHHHHcCCCEEEEEEee
Confidence 367777766 3566777888764 5789998883 2 2334556677888888774
No 260
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=50.21 E-value=64 Score=30.55 Aligned_cols=63 Identities=19% Similarity=0.143 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhhCCCCceEEEecccccCch--------hhHHHHHhcCCcEEEEecCccccchHHHHHHHH
Q 015415 296 RYHVMQAAKTLVNKGYDPEVIDIRSLKPFDL--------YTIGNSIKKTHRVLIVEECMRTGGIGASLTAAI 359 (407)
Q Consensus 296 ~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~--------~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l 359 (407)
...+..+++.+.++|.+++++|++-+-.+|. ..+.+.++..+.+|++=..+ ++|+...+.++|
T Consensus 43 ~~la~~~~~~~~~~g~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii~TPEY-n~sipg~LKNai 113 (219)
T TIGR02690 43 RLLAEEAARLLGCEGRETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSEGQVWCSPER-HGAITGSQKDQI 113 (219)
T ss_pred HHHHHHHHHHHhhcCCEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCCEEEEeCCcc-ccCcCHHHHHHH
Confidence 3455666677776799999999876532221 23667777788877776655 366666555443
No 261
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=49.15 E-value=46 Score=24.77 Aligned_cols=64 Identities=25% Similarity=0.174 Sum_probs=38.8
Q ss_pred EEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhc--CCcEEEEecCccccchHH
Q 015415 287 VTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKK--THRVLIVEECMRTGGIGA 353 (407)
Q Consensus 287 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~--~~~vvvvEe~~~~GGlGs 353 (407)
++|.+. +....+.+|.+.|++.|+..+.+|+..- |-..+.+.+.... +=.+++++... .||+.+
T Consensus 2 i~ly~~-~~Cp~C~~ak~~L~~~~i~~~~i~i~~~-~~~~~~~~~~~~~~~~vP~v~i~g~~-igg~~~ 67 (75)
T cd03418 2 VEIYTK-PNCPYCVRAKALLDKKGVDYEEIDVDGD-PALREEMINRSGGRRTVPQIFIGDVH-IGGCDD 67 (75)
T ss_pred EEEEeC-CCChHHHHHHHHHHHCCCcEEEEECCCC-HHHHHHHHHHhCCCCccCEEEECCEE-EeChHH
Confidence 444443 4567888899999999999999998653 1111222222221 22456777665 488654
No 262
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=48.90 E-value=94 Score=25.24 Aligned_cols=65 Identities=20% Similarity=0.274 Sum_probs=43.6
Q ss_pred CcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHh-----cCCcEEEEecCccccchHH
Q 015415 285 EHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIK-----KTHRVLIVEECMRTGGIGA 353 (407)
Q Consensus 285 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~-----~~~~vvvvEe~~~~GGlGs 353 (407)
.+++|++. +....|.+|.+.|.+.|++.+++|+..- |- ...+.+.+. .+=..|.+.... .||+..
T Consensus 8 ~~Vvvysk-~~Cp~C~~ak~~L~~~~i~~~~vdid~~-~~-~~~~~~~l~~~tg~~tvP~Vfi~g~~-iGG~dd 77 (99)
T TIGR02189 8 KAVVIFSR-SSCCMCHVVKRLLLTLGVNPAVHEIDKE-PA-GKDIENALSRLGCSPAVPAVFVGGKL-VGGLEN 77 (99)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCCCEEEEcCCC-cc-HHHHHHHHHHhcCCCCcCeEEECCEE-EcCHHH
Confidence 45777776 6678899999999999999999998742 22 122333333 233456677655 588765
No 263
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=48.80 E-value=88 Score=38.42 Aligned_cols=114 Identities=12% Similarity=0.042 Sum_probs=62.5
Q ss_pred CCceEec--cchhHH---HHHHHHHHHhcCCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-c-CCC-
Q 015415 133 DLRVLDT--PIAENS---FTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-P-GGV- 204 (407)
Q Consensus 133 p~R~i~~--GIaE~~---~vg~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~-~G~- 204 (407)
|.+++.+ +..=.+ .++.|+|++++--+|+++...-.-++.....|-. +.... .++|+++++ . +|.
T Consensus 748 p~~~i~~~~~~G~mG~~G~lpaAIGaala~~r~Vv~i~GDGsF~m~~~EL~T-a~r~~------~~lpi~iVV~NN~ggg 820 (1655)
T PLN02980 748 PCQWIQVAGNRGASGIDGLLSTAIGFAVGCNKRVLCVVGDISFLHDTNGLSI-LSQRI------ARKPMTILVINNHGGA 820 (1655)
T ss_pred ccccceEEecCCccchhhhHHHHHHHhhcCCCCEEEEEehHHHHhhhhHHHH-hhccc------CCCCEEEEEEeCCCcH
Confidence 6677752 222222 3777888877745666665553222322333321 11110 167877665 3 331
Q ss_pred -CCCC---------------CcCccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 205 -GRQL---------------GAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 205 -~~~~---------------G~tHsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
.... +..|.-++..+.+.. |+.-....+++|+..++.++...++|++|-
T Consensus 821 i~~~l~~~~~~~~~~~~~~~~~~~~~df~~lA~a~-G~~~~rV~~~~eL~~aL~~a~~~~~p~lIE 885 (1655)
T PLN02980 821 IFSLLPIAKRTEPRVLNQYFYTSHDISIENLCLAH-GVRHLHVGTKSELEDALFTSQVEQMDCVVE 885 (1655)
T ss_pred hhhcCccCCCCcchhHHHHhcCCCCCCHHHHHHHc-CCceeecCCHHHHHHHHHHhhccCCCEEEE
Confidence 1110 001111222333333 677888899999999999999889999984
No 264
>TIGR00072 hydrog_prot hydrogenase maturation protease. HycI and HoxM are well-characterized as responsible for C-terminal protease activity on their respective hydrogenase large chains. A large number of homologous proteins appear responsible for the maturation of various forms of hydrogenase.
Probab=48.42 E-value=49 Score=28.77 Aligned_cols=53 Identities=21% Similarity=0.244 Sum_probs=33.9
Q ss_pred EEEechhH----HHHHHHHHHHhhCC---CCceEEEecccccCchhhHHHHHhcCCcEEEEecC
Q 015415 289 ILTYSRMR----YHVMQAAKTLVNKG---YDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEEC 345 (407)
Q Consensus 289 Iia~G~~~----~~al~Aa~~L~~~G---i~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~ 345 (407)
|+++|+.. .....+++.|++.. -+++++|..+.- ..+...+.+++++++||-.
T Consensus 2 ViGiGN~l~~DDg~G~~v~~~L~~~~~~~~~v~~id~g~~~----~~l~~~l~~~d~viiVDA~ 61 (145)
T TIGR00072 2 VLGIGNILRGDDGFGPRVAERLEERYEFPPGVEVLDGGTLG----LELLDAIEGADRVIVVDAV 61 (145)
T ss_pred EEEECchhcccCcHHHHHHHHHHHhcCCCCCeEEEECCCCH----HHHHHHHhCCCEEEEEEcc
Confidence 67777665 33556777776542 358888888762 2234555677788887764
No 265
>cd06068 H2MP_like-1 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=47.56 E-value=48 Score=28.85 Aligned_cols=54 Identities=9% Similarity=0.060 Sum_probs=31.7
Q ss_pred EEEechhH----HHHHHHHHHHhhCCC--CceEEEecccccCchhhHHHHHhcCCcEEEEecC
Q 015415 289 ILTYSRMR----YHVMQAAKTLVNKGY--DPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEEC 345 (407)
Q Consensus 289 Iia~G~~~----~~al~Aa~~L~~~Gi--~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~ 345 (407)
|+++|+.. .....+++.|+++.. +++++|..+. ++ +.+.+.++.+++|++||-.
T Consensus 2 ViGiGN~l~~DDGvG~~v~~~L~~~~~~~~v~~~d~g~~-~~--~l~~~~~~~~d~viiVDA~ 61 (144)
T cd06068 2 VAGVGNIFLGDDGFGVEVARRLRPRQLPPGVRVADFGIR-GI--HLAYELLDGYDTLILVDAV 61 (144)
T ss_pred EEEECccccccCcHHHHHHHHHhccCCCCCeEEEECCCC-HH--HHHHHHHhcCCEEEEEEec
Confidence 56666655 345667777766543 3777877664 22 2222345556777777663
No 266
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=46.77 E-value=2.7e+02 Score=26.70 Aligned_cols=73 Identities=18% Similarity=0.105 Sum_probs=45.9
Q ss_pred CCcEEEEEech-hHHHHHHHHHHH-hhCCCCceEEEecccccCchhh-----HHHHHhcCCcEEEEecCccccchHHHHH
Q 015415 284 GEHVTILTYSR-MRYHVMQAAKTL-VNKGYDPEVIDIRSLKPFDLYT-----IGNSIKKTHRVLIVEECMRTGGIGASLT 356 (407)
Q Consensus 284 G~dv~Iia~G~-~~~~al~Aa~~L-~~~Gi~v~VI~~~~l~Pfd~~~-----l~~~~~~~~~vvvvEe~~~~GGlGs~I~ 356 (407)
|+. +|+++|. ...+..+|++.+ +..+.++.+..+.+-.|-+.+. |..+-++.+..+=.=+|.. |+...++
T Consensus 113 gkP-vIlSTG~stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~~~vG~SDHt~--g~~~~~~ 189 (241)
T PF03102_consen 113 GKP-VILSTGMSTLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFGVPVGYSDHTD--GIEAPIA 189 (241)
T ss_dssp -S--EEEE-TT--HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHSTSEEEEEE-SS--SSHHHHH
T ss_pred CCc-EEEECCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhcCCCEEeCCCCC--CcHHHHH
Confidence 443 6889995 668888999999 5568899999999999987664 3333335677788888875 5666666
Q ss_pred HHH
Q 015415 357 AAI 359 (407)
Q Consensus 357 ~~l 359 (407)
+..
T Consensus 190 Ava 192 (241)
T PF03102_consen 190 AVA 192 (241)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 267
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=46.09 E-value=80 Score=28.96 Aligned_cols=69 Identities=9% Similarity=0.176 Sum_probs=46.6
Q ss_pred echhHHHHHHHHHHHhh-CCCCceEEEecccccCch--------------hhHHHHHhcCCcEEEEecCccccchHHHHH
Q 015415 292 YSRMRYHVMQAAKTLVN-KGYDPEVIDIRSLKPFDL--------------YTIGNSIKKTHRVLIVEECMRTGGIGASLT 356 (407)
Q Consensus 292 ~G~~~~~al~Aa~~L~~-~Gi~v~VI~~~~l~Pfd~--------------~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~ 356 (407)
+|.....|..+++.+++ .|.++++++++...|-+. .. .+.+..++.|++.=..+ .|++...+.
T Consensus 12 ~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~aD~ii~gsPty-~g~~~~~lk 89 (200)
T PRK03767 12 YGHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVAT-PDELADYDAIIFGTPTR-FGNMAGQMR 89 (200)
T ss_pred CCHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccC-HHHHHhCCEEEEEeccc-CCCchHHHH
Confidence 45566677788888887 899999999875433111 11 34566677766665555 688888888
Q ss_pred HHHHhc
Q 015415 357 AAITEN 362 (407)
Q Consensus 357 ~~l~e~ 362 (407)
.++-..
T Consensus 90 ~fld~~ 95 (200)
T PRK03767 90 NFLDQT 95 (200)
T ss_pred HHHHHh
Confidence 777654
No 268
>TIGR00130 frhD coenzyme F420-reducing hydrogenase delta subunit (putative coenzyme F420 hydrogenase processing subunit). FrhD is not part of the active FRH heterotrimer, but is probably a protease required for maturation. Alternative name: 8-hydroxy-5-deazaflavin (F420) reducing hydrogenase (FRH) subunit delta.
Probab=45.93 E-value=41 Score=29.68 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=36.5
Q ss_pred CcEEEEEechhH----HHHHHHHHHHhhCC----CCceEEEecccccCchhhHHHHHhcCCcEEEEecC
Q 015415 285 EHVTILTYSRMR----YHVMQAAKTLVNKG----YDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEEC 345 (407)
Q Consensus 285 ~dv~Iia~G~~~----~~al~Aa~~L~~~G----i~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~ 345 (407)
++++|+++|+.. .....++++|++.+ -+++++|..+.-|-....+. .+.+.+++++||-.
T Consensus 3 ~~ilVlGiGN~l~gDDGvG~~v~~~L~~~~~~~~~~v~vid~gt~~~~~l~~~~-~~~~~d~vIivDA~ 70 (153)
T TIGR00130 3 HEILVVGCGNILFGDDGFGPAVIEYLKENGVEKPDNVCLIDAGTGAPHFVFTLI-PQSKWKKIIVVDIA 70 (153)
T ss_pred ceEEEEEeCccccccCcHhHHHHHHHHHhCCCCCCCeEEEECCCcHHHHHHHHh-hhcCCCEEEEEEcc
Confidence 467899999876 34667788886422 24788887775332111111 24566777777763
No 269
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=45.65 E-value=83 Score=24.50 Aligned_cols=58 Identities=14% Similarity=0.104 Sum_probs=37.3
Q ss_pred cEEEEEech----hHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHH-HhcCCcEEEEecCc
Q 015415 286 HVTILTYSR----MRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNS-IKKTHRVLIVEECM 346 (407)
Q Consensus 286 dv~Iia~G~----~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~-~~~~~~vvvvEe~~ 346 (407)
.++|+..+. ....+++.++.|++.|+.+.+ |.+. +.+... +..+ ..+...++++-+..
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~-d~~~-~~l~k~-i~~a~~~g~~~~iiiG~~e 65 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLL-DDRN-ERPGVK-FADADLIGIPYRIVVGKKS 65 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEE-ECCC-CCcccc-hhHHHhcCCCEEEEECCch
Confidence 366776654 457789999999999999977 5442 344433 3332 33456677776554
No 270
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=44.90 E-value=1.3e+02 Score=22.35 Aligned_cols=69 Identities=16% Similarity=0.116 Sum_probs=41.3
Q ss_pred cEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhc-CCcEEEEecCccccchHHHHHHHH
Q 015415 286 HVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKK-THRVLIVEECMRTGGIGASLTAAI 359 (407)
Q Consensus 286 dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~-~~~vvvvEe~~~~GGlGs~I~~~l 359 (407)
+++|.+. +....+.+|.+.|++.|+..+.+|+..- + +.+.+.+.... +=.++++++.. .||. .+|.++|
T Consensus 2 ~v~lys~-~~Cp~C~~ak~~L~~~~i~~~~~~v~~~-~-~~~~~~~~~g~~~vP~ifi~g~~-igg~-~~l~~~l 71 (72)
T cd03029 2 SVSLFTK-PGCPFCARAKAALQENGISYEEIPLGKD-I-TGRSLRAVTGAMTVPQVFIDGEL-IGGS-DDLEKYF 71 (72)
T ss_pred eEEEEEC-CCCHHHHHHHHHHHHcCCCcEEEECCCC-h-hHHHHHHHhCCCCcCeEEECCEE-EeCH-HHHHHHh
Confidence 4555553 6677888889999999999999987542 2 23333222121 22456666654 5774 3454443
No 271
>TIGR00142 hycI hydrogenase maturation protease HycI. Hydrogenase maturation protease is a protease that is involved in the C-terminal processing of HycE,the large subunit of hydrogenase 3 from E.Coli. This protein seems to be found in E.Coli and in Archaea.
Probab=44.59 E-value=46 Score=29.06 Aligned_cols=53 Identities=17% Similarity=0.156 Sum_probs=30.4
Q ss_pred EEEEechhH----HHHHHHHHHHhhCCC--CceEEEecccccCchhhHHHHHh--cCCcEEEEec
Q 015415 288 TILTYSRMR----YHVMQAAKTLVNKGY--DPEVIDIRSLKPFDLYTIGNSIK--KTHRVLIVEE 344 (407)
Q Consensus 288 ~Iia~G~~~----~~al~Aa~~L~~~Gi--~v~VI~~~~l~Pfd~~~l~~~~~--~~~~vvvvEe 344 (407)
+|+++|+.. .....++++|++... ++.++|.-+. |++.. ..++ +++++++||-
T Consensus 2 lVlGiGN~l~~DDG~G~~v~~~L~~~~~~~~v~v~d~gt~-~~~~~---~~~~~~~~d~viivDA 62 (146)
T TIGR00142 2 VLLCVGNELMGDDGAGPYLAEKCAAAPKEENWVVINAGTV-PENFT---VAIRELRPTHILIVDA 62 (146)
T ss_pred EEEEeCccccccCcHHHHHHHHHHhccCCCCEEEEECCCC-hHHHH---HHHHhcCCCEEEEEEC
Confidence 567777665 335566677765422 4677777775 54432 2222 3566666665
No 272
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=44.44 E-value=60 Score=25.10 Aligned_cols=57 Identities=16% Similarity=0.146 Sum_probs=36.0
Q ss_pred cEEEEEech----hHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHH-hcCCcEEEEecC
Q 015415 286 HVTILTYSR----MRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSI-KKTHRVLIVEEC 345 (407)
Q Consensus 286 dv~Iia~G~----~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~-~~~~~vvvvEe~ 345 (407)
++.|+..+. ....+++.++.|++.|+.+.+-+ .. +.+... +..+- .+...++++.+.
T Consensus 3 ~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~-~~-~~~~k~-~~~a~~~g~~~~iiig~~ 64 (94)
T cd00738 3 DVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDD-RE-RKIGKK-FREADLRGVPFAVVVGED 64 (94)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecC-CC-cCHhHH-HHHHHhCCCCEEEEECCC
Confidence 467776664 56788899999999999877633 22 344443 33322 234567777764
No 273
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=43.63 E-value=1e+02 Score=32.37 Aligned_cols=61 Identities=21% Similarity=0.259 Sum_probs=31.9
Q ss_pred cccEEEEe-cCCC--CCCCC-cCccchHH--HHHccCCCcEEEeeCCHHHHHHHHHHHH----hcCCCEEEe
Q 015415 193 TIPIVIRG-PGGV--GRQLG-AEHSQRLE--SYFQSIPGIQMVACSTPYNAKGLMKAAI----RSENPVILF 254 (407)
Q Consensus 193 ~lpvvi~~-~~G~--~~~~G-~tHsq~~e--a~~~~iPgl~V~~P~d~~e~~~~~~~a~----~~~~Pv~ir 254 (407)
++||++++ .++. +.... .+....+. +-.-.+|++.| .=.|..++...++.|+ +.++|++|-
T Consensus 251 ~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~V-DG~D~~av~~a~~~A~~~Ar~g~gP~LIe 321 (433)
T PLN02374 251 KLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHV-DGMDVLKVREVAKEAIERARRGEGPTLVE 321 (433)
T ss_pred CCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEE-CCCCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 89999988 4442 11110 01111222 22235777643 4556666665555544 457899985
No 274
>PRK11544 hycI hydrogenase 3 maturation protease; Provisional
Probab=43.58 E-value=54 Score=29.11 Aligned_cols=54 Identities=26% Similarity=0.161 Sum_probs=34.4
Q ss_pred EEEEEechhH----HHHHHHHHHHhhCC-CCceEEEecccccCchhhHHHHHh--cCCcEEEEec
Q 015415 287 VTILTYSRMR----YHVMQAAKTLVNKG-YDPEVIDIRSLKPFDLYTIGNSIK--KTHRVLIVEE 344 (407)
Q Consensus 287 v~Iia~G~~~----~~al~Aa~~L~~~G-i~v~VI~~~~l~Pfd~~~l~~~~~--~~~~vvvvEe 344 (407)
++|+++|+.. .....++++|++.. -+++++|..+ -|++... .+. +.+++++||-
T Consensus 3 ~lVlGiGN~L~gDDGvG~~v~~~L~~~~~~~v~vid~gt-~~~~~~~---~i~~~~~d~vIiVDA 63 (156)
T PRK11544 3 DVVLTVGNSMMGDDGAGPLLAEKLAAAPKGGWVVIDGGS-APENDIV---AIRELRPERLLIVDA 63 (156)
T ss_pred EEEEEeCccccccCcHHHHHHHHHhccCCCCeEEEECCC-CHHHHHH---HHHhcCCCEEEEEEC
Confidence 5788888766 34667777776542 2578888888 3554322 232 3467777775
No 275
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=43.28 E-value=91 Score=28.74 Aligned_cols=69 Identities=16% Similarity=0.225 Sum_probs=52.1
Q ss_pred echhHHHHHHHHHHHhhCCCCceEEEeccc--cc--------------C--c-hhhHHHHHhcCCcEEEEecCccccchH
Q 015415 292 YSRMRYHVMQAAKTLVNKGYDPEVIDIRSL--KP--------------F--D-LYTIGNSIKKTHRVLIVEECMRTGGIG 352 (407)
Q Consensus 292 ~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l--~P--------------f--d-~~~l~~~~~~~~~vvvvEe~~~~GGlG 352 (407)
+|.+...+.++++.+++.|..+++|+++-. +| + | .+.|.+.+..++.||+.=.-+ .|++.
T Consensus 13 ~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~gsPvy-~g~vs 91 (207)
T COG0655 13 NGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFGSPVY-FGNVS 91 (207)
T ss_pred CCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEeCCee-cCCch
Confidence 578888888899999989999999999865 33 1 2 255666677778777766665 58888
Q ss_pred HHHHHHHHh
Q 015415 353 ASLTAAITE 361 (407)
Q Consensus 353 s~I~~~l~e 361 (407)
+.+..++-.
T Consensus 92 a~~K~fiDR 100 (207)
T COG0655 92 AQMKAFIDR 100 (207)
T ss_pred HHHHHHHhh
Confidence 888877755
No 276
>PRK10638 glutaredoxin 3; Provisional
Probab=42.82 E-value=86 Score=24.16 Aligned_cols=65 Identities=18% Similarity=0.121 Sum_probs=37.2
Q ss_pred cEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhc-CCcEEEEecCccccchHH
Q 015415 286 HVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKK-THRVLIVEECMRTGGIGA 353 (407)
Q Consensus 286 dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~-~~~vvvvEe~~~~GGlGs 353 (407)
+++|.+. .....|.+|.+.|++.|+..+++|+..-.... +.+.+.-.. +=.+++++.. ..||+.+
T Consensus 3 ~v~ly~~-~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~-~~l~~~~g~~~vP~i~~~g~-~igG~~~ 68 (83)
T PRK10638 3 NVEIYTK-ATCPFCHRAKALLNSKGVSFQEIPIDGDAAKR-EEMIKRSGRTTVPQIFIDAQ-HIGGCDD 68 (83)
T ss_pred cEEEEEC-CCChhHHHHHHHHHHcCCCcEEEECCCCHHHH-HHHHHHhCCCCcCEEEECCE-EEeCHHH
Confidence 3555553 34468888889999999999999885311111 122221111 2245656544 4688743
No 277
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=42.61 E-value=2e+02 Score=24.48 Aligned_cols=59 Identities=14% Similarity=0.071 Sum_probs=42.1
Q ss_pred EEEEEechhHHHHHHHHHHHhhC-CCCceEEEecccccCchhhHHHHHhc-CCcEEEEecC
Q 015415 287 VTILTYSRMRYHVMQAAKTLVNK-GYDPEVIDIRSLKPFDLYTIGNSIKK-THRVLIVEEC 345 (407)
Q Consensus 287 v~Iia~G~~~~~al~Aa~~L~~~-Gi~v~VI~~~~l~Pfd~~~l~~~~~~-~~~vvvvEe~ 345 (407)
++++++-...+.+.+.+-..+.+ --++.+|.++|.--+|.+.|.+.+.+ .+.|+++--+
T Consensus 2 Il~F~C~~~ay~aad~ag~~~~~~p~~vriIrvpC~Grv~~~~il~Af~~GADGV~V~gC~ 62 (124)
T PF02662_consen 2 ILAFCCNWCAYAAADLAGVSRLQYPPNVRIIRVPCSGRVDPEFILRAFEKGADGVLVAGCH 62 (124)
T ss_pred EEEEEeCCCcHHHHHHHhhccCCCCCCeEEEEccCCCccCHHHHHHHHHcCCCEEEEeCCC
Confidence 56666666666665555544322 34689999999999999999888875 6888886443
No 278
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=42.47 E-value=89 Score=26.12 Aligned_cols=50 Identities=12% Similarity=0.258 Sum_probs=28.4
Q ss_pred CcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEe
Q 015415 285 EHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVE 343 (407)
Q Consensus 285 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvE 343 (407)
++++|+.-|.. |.++++.|++.|+..-+|+-. | +......+..++++.++
T Consensus 3 kkvLIanrGei---a~r~~ra~r~~Gi~tv~v~s~---~---d~~s~~~~~ad~~~~~~ 52 (110)
T PF00289_consen 3 KKVLIANRGEI---AVRIIRALRELGIETVAVNSN---P---DTVSTHVDMADEAYFEP 52 (110)
T ss_dssp SEEEESS-HHH---HHHHHHHHHHTTSEEEEEEEG---G---GTTGHHHHHSSEEEEEE
T ss_pred CEEEEECCCHH---HHHHHHHHHHhCCcceeccCc---h---hcccccccccccceecC
Confidence 35777777777 555555666668876666532 2 22223344456666665
No 279
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=42.13 E-value=2e+02 Score=30.74 Aligned_cols=142 Identities=15% Similarity=0.190 Sum_probs=72.3
Q ss_pred HHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccc--hhHHHHHHHHHHHhc-CCeeEEEecchhH
Q 015415 93 LREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPI--AENSFTGMGIGAAMT-GLRPIVEGMNMGF 169 (407)
Q Consensus 93 ~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GI--aE~~~vg~A~GlA~~-G~rp~~~t~~~~f 169 (407)
+-+.|.+.+.++... ++..|.+.. .+.. .. +.|.+|+..+- +=-..+..|.|++++ +.|+++ ...-.-
T Consensus 361 ~~~~l~~~l~~~~~~-ii~~D~G~~--~~~~----~~-~~~~~~~~~~~~g~mG~glpaaiGa~lA~~~r~v~-i~GDG~ 431 (535)
T TIGR03394 361 IARAVNDRFARHGQM-PLAADIGDC--LFTA----MD-MDDAGLMAPGYYAGMGFGVPAGIGAQCTSGKRILT-LVGDGA 431 (535)
T ss_pred HHHHHHHHhCCCCCE-EEEEccCHH--HHHH----Hh-cCCCcEECcCccchhhhHHHHHHHHHhCCCCCeEE-EEeChH
Confidence 556677777755443 333455531 1211 11 22567776531 112234446666666 456655 344332
Q ss_pred HHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCC------CC---cCccchHHHHHccCCCcEEEeeCCHHHHHH
Q 015415 170 LLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQ------LG---AEHSQRLESYFQSIPGIQMVACSTPYNAKG 239 (407)
Q Consensus 170 ~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~------~G---~tHsq~~ea~~~~iPgl~V~~P~d~~e~~~ 239 (407)
++.....|- .+... ++|++++. .++..+- .. ..+...+..+.+.+ |..-+...++.|+..
T Consensus 432 f~m~~~EL~-Ta~r~--------~lpv~~vV~NN~~y~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~ 501 (535)
T TIGR03394 432 FQMTGWELG-NCRRL--------GIDPIVILFNNASWEMLRVFQPESAFNDLDDWRFADMAAGM-GGDGVRVRTRAELAA 501 (535)
T ss_pred HHhHHHHHH-HHHHc--------CCCcEEEEEECCccceeehhccCCCcccCCCCCHHHHHHHc-CCCceEeCCHHHHHH
Confidence 333333343 23332 78877765 3332221 00 01111222333333 455678889999999
Q ss_pred HHHHHHhcCC-CEEE
Q 015415 240 LMKAAIRSEN-PVIL 253 (407)
Q Consensus 240 ~~~~a~~~~~-Pv~i 253 (407)
.++++++.++ |++|
T Consensus 502 al~~a~~~~~~p~lI 516 (535)
T TIGR03394 502 ALDKAFATRGRFQLI 516 (535)
T ss_pred HHHHHHhcCCCeEEE
Confidence 9999998665 6565
No 280
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=41.83 E-value=1.2e+02 Score=28.53 Aligned_cols=84 Identities=24% Similarity=0.236 Sum_probs=51.3
Q ss_pred CcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhccc
Q 015415 285 EHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFH 364 (407)
Q Consensus 285 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~ 364 (407)
.++.||- |.. -..-|+.+| |.+..=+.+.++.+-+.+.++..+.+..+++++-+... + =.+|+..|.++++
T Consensus 95 ~~v~iIP-giS--S~q~a~ARl---g~~~~~~~~islHgr~~~~l~~~~~~~~~~vil~~~~~--~-P~~IA~~L~~~G~ 165 (210)
T COG2241 95 EEVEIIP-GIS--SVQLAAARL---GWPLQDTEVISLHGRPVELLRPLLENGRRLVILTPDDF--G-PAEIAKLLTENGI 165 (210)
T ss_pred cceEEec-Chh--HHHHHHHHh---CCChHHeEEEEecCCCHHHHHHHHhCCceEEEeCCCCC--C-HHHHHHHHHhCCC
Confidence 4577764 322 222244455 55554444445557788888888877777888777651 1 3689999999886
Q ss_pred cCCCCC---eEEeecCCC
Q 015415 365 DYLDAP---IVCLSSQDV 379 (407)
Q Consensus 365 ~~~~~~---v~~ig~~d~ 379 (407)
. +.+ ..+++.+|+
T Consensus 166 ~--~~~~~VlE~L~~~~E 181 (210)
T COG2241 166 G--DSRVTVLENLGYPDE 181 (210)
T ss_pred C--CceEEEEcccCCCch
Confidence 3 233 236666654
No 281
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=40.53 E-value=14 Score=30.81 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=24.7
Q ss_pred ecCCcEEEEEechhHHH-HHHHHHHHhhCCCCceEEEe
Q 015415 282 RPGEHVTILTYSRMRYH-VMQAAKTLVNKGYDPEVIDI 318 (407)
Q Consensus 282 ~eG~dv~Iia~G~~~~~-al~Aa~~L~~~Gi~v~VI~~ 318 (407)
.+..|++||++|..... -.+..+.|+++||.+++.|-
T Consensus 51 ~p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T 88 (110)
T PF04430_consen 51 EPKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDT 88 (110)
T ss_dssp CCS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-H
T ss_pred cCCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEECH
Confidence 34789999999976433 34566778899999888763
No 282
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=40.30 E-value=61 Score=26.33 Aligned_cols=43 Identities=19% Similarity=0.086 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCC
Q 015415 294 RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTH 337 (407)
Q Consensus 294 ~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~ 337 (407)
+....+.+|.+.|++.|++.+.+|+.. .|.+.+.|.+.+.+.+
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~~l~~~~~~~~ 49 (105)
T cd02977 7 PNCSTSRKALAWLEEHGIEYEFIDYLK-EPPTKEELKELLAKLG 49 (105)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEeecc-CCCCHHHHHHHHHhcC
Confidence 456788899999999999999999875 6888888887776654
No 283
>PRK12754 transketolase; Reviewed
Probab=39.86 E-value=2e+02 Score=31.90 Aligned_cols=74 Identities=15% Similarity=0.234 Sum_probs=41.4
Q ss_pred HHHHHHHHhhhhhchhcCCccccc-EEEEe-cCCCCCCCCcCc---cchHHHHHccCCCcEEEe---eCCHHHHHHHHHH
Q 015415 172 LAFNQISNNCGMLHYTSGGQFTIP-IVIRG-PGGVGRQLGAEH---SQRLESYFQSIPGIQMVA---CSTPYNAKGLMKA 243 (407)
Q Consensus 172 ra~dqi~~~~a~~~~~~gg~~~lp-vvi~~-~~G~~~~~G~tH---sq~~ea~~~~iPgl~V~~---P~d~~e~~~~~~~ 243 (407)
..+|.+. .++.+ ++| ++++. .++. .-+|+++ ...+...+++. ||.++. =.|.+++..++..
T Consensus 162 ~~~EA~~-~A~~~--------kL~nLi~ivD~N~~-~idg~~~~~~~~~~~~r~~a~-Gw~vi~vvDG~D~~ai~~A~~~ 230 (663)
T PRK12754 162 ISHEVCS-LAGTL--------KLGKLIAFYDDNGI-SIDGHVEGWFTDDTAMRFEAY-GWHVIRGIDGHDADSIKRAVEE 230 (663)
T ss_pred HHHHHHH-HHHHh--------CCCCEEEEEEcCCC-ccCcchhhccCccHHHHHHhc-CCeEEeeECCCCHHHHHHHHHH
Confidence 4667663 34443 898 44554 3453 2344444 22333566665 787765 3355566666666
Q ss_pred HHh-cCCCEEEeec
Q 015415 244 AIR-SENPVILFEH 256 (407)
Q Consensus 244 a~~-~~~Pv~ir~~ 256 (407)
|.. .++|++|...
T Consensus 231 a~~~~~~Pt~I~~~ 244 (663)
T PRK12754 231 ARAVTDKPSLLMCK 244 (663)
T ss_pred HHhcCCCCEEEEEE
Confidence 654 4779998643
No 284
>PLN02409 serine--glyoxylate aminotransaminase
Probab=39.53 E-value=81 Score=32.17 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=10.9
Q ss_pred CchhhHHHH--HhcCCcEEEEecCc
Q 015415 324 FDLYTIGNS--IKKTHRVLIVEECM 346 (407)
Q Consensus 324 fd~~~l~~~--~~~~~~vvvvEe~~ 346 (407)
+|.+.|.+. +++++.++++|+-.
T Consensus 154 ~~~~~i~~l~~~~~~g~~~vvD~v~ 178 (401)
T PLN02409 154 NDLAGVRKLLDCAQHPALLLVDGVS 178 (401)
T ss_pred CCHHHHHHHHhhhccCcEEEEEccc
Confidence 344445554 44444444444443
No 285
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=39.52 E-value=41 Score=27.94 Aligned_cols=43 Identities=23% Similarity=0.176 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCC
Q 015415 294 RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTH 337 (407)
Q Consensus 294 ~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~ 337 (407)
+....|.+|.+.|+++|+..+.+|+.. .|...+.|.+.+++++
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~el~~~~~~~~ 49 (111)
T cd03036 7 PKCSTCRKAKKWLDEHGVDYTAIDIVE-EPPSKEELKKWLEKSG 49 (111)
T ss_pred CCCHHHHHHHHHHHHcCCceEEecccC-CcccHHHHHHHHHHcC
Confidence 456778899999999999999999876 5788877877666543
No 286
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=39.51 E-value=65 Score=27.82 Aligned_cols=43 Identities=14% Similarity=0.043 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCC
Q 015415 294 RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTH 337 (407)
Q Consensus 294 ~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~ 337 (407)
+....+.+|.+-|+++|+..+++|+.. .|++.+.|.+.+++++
T Consensus 8 ~~C~~crkA~~~L~~~~i~~~~~d~~~-~~~s~~eL~~~l~~~~ 50 (132)
T PRK13344 8 SSCTSCKKAKTWLNAHQLSYKEQNLGK-EPLTKEEILAILTKTE 50 (132)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEECCC-CCCCHHHHHHHHHHhC
Confidence 456788889999999999999999875 6888888888877653
No 287
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=39.41 E-value=47 Score=28.26 Aligned_cols=48 Identities=10% Similarity=0.126 Sum_probs=31.2
Q ss_pred echhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEec
Q 015415 292 YSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEE 344 (407)
Q Consensus 292 ~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe 344 (407)
+|+.-..|.+.++.|++.|+++.++++.... .. + +.+...+.++++=.
T Consensus 7 tG~te~~A~~ia~~l~~~g~~~~~~~~~~~~---~~-~-~~~~~~~~~i~~~s 54 (143)
T PF00258_consen 7 TGNTEKMAEAIAEGLRERGVEVRVVDLDDFD---DS-P-SDLSEYDLLIFGVS 54 (143)
T ss_dssp SSHHHHHHHHHHHHHHHTTSEEEEEEGGGSC---HH-H-HHHCTTSEEEEEEE
T ss_pred chhHHHHHHHHHHHHHHcCCceeeechhhhh---hh-h-hhhhhhceeeEeec
Confidence 4555566777778888889999999877653 32 2 33444555555444
No 288
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=39.29 E-value=2.4e+02 Score=23.96 Aligned_cols=76 Identities=8% Similarity=-0.028 Sum_probs=47.4
Q ss_pred cEEEEEechhHHHHHHHHHHH----hhCCCCceEEEecc-------------cccCchhhHHHHHhc-CCcEEEEecCcc
Q 015415 286 HVTILTYSRMRYHVMQAAKTL----VNKGYDPEVIDIRS-------------LKPFDLYTIGNSIKK-THRVLIVEECMR 347 (407)
Q Consensus 286 dv~Iia~G~~~~~al~Aa~~L----~~~Gi~v~VI~~~~-------------l~Pfd~~~l~~~~~~-~~~vvvvEe~~~ 347 (407)
-++|++.|+....+.+..+.+ ++.--+..|--..+ -.|-..+.|.+.... +++|+|+-=+..
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G~~~V~V~Pl~l~ 81 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADGYTEVIVQSLHII 81 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCEEEEEeCeeE
Confidence 378899998877666554444 33322333333322 146667888776664 688888888887
Q ss_pred ccchHHHHHHHHHh
Q 015415 348 TGGIGASLTAAITE 361 (407)
Q Consensus 348 ~GGlGs~I~~~l~e 361 (407)
.|.--..|.+.+.+
T Consensus 82 ~G~e~~di~~~v~~ 95 (127)
T cd03412 82 PGEEYEKLKREVDA 95 (127)
T ss_pred CcHHHHHHHHHHHH
Confidence 77666666666554
No 289
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=38.03 E-value=99 Score=28.37 Aligned_cols=63 Identities=11% Similarity=0.173 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhhCCCCceEEEecccccC----------chhhHHHHHhcCCcEEEEecCccccchHHHHHHHH
Q 015415 296 RYHVMQAAKTLVNKGYDPEVIDIRSLKPF----------DLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAI 359 (407)
Q Consensus 296 ~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pf----------d~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l 359 (407)
...+..+++.|+++|.++++||+..+.+- +.+.+.+.++..+.+|++=.-+ .|++...+..++
T Consensus 17 ~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y-~~s~pg~LKn~i 89 (191)
T PRK10569 17 SALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVY-KASFSGALKTLL 89 (191)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCcc-CCCCCHHHHHHH
Confidence 34455666788888999999998865431 2234556677788888887766 467766666555
No 290
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=37.91 E-value=3.1e+02 Score=31.58 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHhc-CCCEEEeec
Q 015415 233 TPYNAKGLMKAAIRS-ENPVILFEH 256 (407)
Q Consensus 233 d~~e~~~~~~~a~~~-~~Pv~ir~~ 256 (407)
|+..+..++..|.+. ..|++|+-.
T Consensus 362 D~~~i~~A~~~A~~~~~~PTvIla~ 386 (889)
T TIGR03186 362 DARKLYAAYDRAVRHEGRPTVILAK 386 (889)
T ss_pred CHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 788888888888765 579998743
No 291
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=37.62 E-value=69 Score=26.68 Aligned_cols=42 Identities=12% Similarity=0.019 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcC
Q 015415 294 RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKT 336 (407)
Q Consensus 294 ~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~ 336 (407)
+....+.+|.+.|++.|++.+++|+.. .|++.+.|.+.++..
T Consensus 8 ~~C~~c~ka~~~L~~~gi~~~~idi~~-~~~~~~el~~~~~~~ 49 (115)
T cd03032 8 PSCSSCRKAKQWLEEHQIPFEERNLFK-QPLTKEELKEILSLT 49 (115)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEecCC-CcchHHHHHHHHHHh
Confidence 566788999999999999999999865 688888888777754
No 292
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=37.57 E-value=1.4e+02 Score=32.68 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=20.1
Q ss_pred CcEEEeeCCHHHHHH---HHHHHHhcCCCEEEee
Q 015415 225 GIQMVACSTPYNAKG---LMKAAIRSENPVILFE 255 (407)
Q Consensus 225 gl~V~~P~d~~e~~~---~~~~a~~~~~Pv~ir~ 255 (407)
||.++.|.|..|... +++.+-+.++|++|..
T Consensus 238 G~~~~~~vDGhd~~~l~~al~~ak~~~~P~~i~~ 271 (617)
T TIGR00204 238 GFNYIGPVDGHDLLELIETLKNAKKLKGPVFLHI 271 (617)
T ss_pred CCcEEcccCCCCHHHHHHHHHHHhcCCCCEEEEE
Confidence 777776766665554 4444444578999863
No 293
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=37.05 E-value=1.4e+02 Score=25.41 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=26.0
Q ss_pred HHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCc
Q 015415 300 MQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECM 346 (407)
Q Consensus 300 l~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~ 346 (407)
-.|++.|++.||++.- .. +++..+. +...+.||++++..
T Consensus 44 ~~a~~~l~~~Gid~~~--~~--~~l~~~~----~~~~DlIv~m~~~~ 82 (140)
T smart00226 44 PRAVEVLKEHGIALSH--HA--SQLTSSD----FKNADLVLAMDHSH 82 (140)
T ss_pred HHHHHHHHHcCcCccc--ee--ccCCHHH----HHhCCEEEEeCHHH
Confidence 4566678888998753 22 2666544 34578999998865
No 294
>PRK12559 transcriptional regulator Spx; Provisional
Probab=36.97 E-value=78 Score=27.29 Aligned_cols=42 Identities=14% Similarity=0.048 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcC
Q 015415 294 RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKT 336 (407)
Q Consensus 294 ~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~ 336 (407)
+....|.+|.+.|++.|++.+.+|+.. .|++.+.|.+.++.+
T Consensus 8 ~~C~~crkA~~~L~~~gi~~~~~di~~-~~~s~~el~~~l~~~ 49 (131)
T PRK12559 8 ASCASCRKAKAWLEENQIDYTEKNIVS-NSMTVDELKSILRLT 49 (131)
T ss_pred CCChHHHHHHHHHHHcCCCeEEEEeeC-CcCCHHHHHHHHHHc
Confidence 456788889999999999999999875 788888888887763
No 295
>PRK06756 flavodoxin; Provisional
Probab=36.80 E-value=2.7e+02 Score=23.83 Aligned_cols=81 Identities=12% Similarity=0.065 Sum_probs=42.5
Q ss_pred echhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhcc-ccCCCCC
Q 015415 292 YSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENF-HDYLDAP 370 (407)
Q Consensus 292 ~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~-~~~~~~~ 370 (407)
+|+.-..|...++.|++.|+++.++|+....+ . ..+.+++.|++.=-.+-.|-+-..+..++.+.. ......+
T Consensus 12 tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~~~-----~-~~~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~~l~~k~ 85 (148)
T PRK06756 12 SGNTEEMADHIAGVIRETENEIEVIDIMDSPE-----A-SILEQYDGIILGAYTWGDGDLPDDFLDFYDAMDSIDLTGKK 85 (148)
T ss_pred CchHHHHHHHHHHHHhhcCCeEEEeehhccCC-----H-HHHhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhcCCCCCCE
Confidence 45555666677777888899998888754321 1 224455555554433322334444555554321 0112345
Q ss_pred eEEeecCC
Q 015415 371 IVCLSSQD 378 (407)
Q Consensus 371 v~~ig~~d 378 (407)
+..+|..+
T Consensus 86 ~~~fgt~~ 93 (148)
T PRK06756 86 AAVFGSCD 93 (148)
T ss_pred EEEEeCCC
Confidence 55666544
No 296
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=36.22 E-value=1.6e+02 Score=28.84 Aligned_cols=60 Identities=15% Similarity=0.268 Sum_probs=32.9
Q ss_pred cccEEEEec-CCCCCCCCcCcc----chHHHHHc--cCCCcEEEeeCCHHHHHHHHHHHHh----cCCCEEEe
Q 015415 193 TIPIVIRGP-GGVGRQLGAEHS----QRLESYFQ--SIPGIQMVACSTPYNAKGLMKAAIR----SENPVILF 254 (407)
Q Consensus 193 ~lpvvi~~~-~G~~~~~G~tHs----q~~ea~~~--~iPgl~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir 254 (407)
++|+++++. ++. +-..+++. ..+..... .+|++.| .-.|+.++...++.|++ .++|++|-
T Consensus 154 ~lPvi~vv~NN~~-~i~~~~~~~~~~~~~~~~a~a~G~~~~~V-dg~d~~~v~~a~~~A~~~ar~~~~P~lIe 224 (293)
T cd02000 154 KLPVIFVCENNGY-AISTPTSRQTAGTSIADRAAAYGIPGIRV-DGNDVLAVYEAAKEAVERARAGGGPTLIE 224 (293)
T ss_pred CCCEEEEEeeCCe-eccCCHHHHhCCccHHHHHHhCCCCEEEE-CCCCHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 899998873 442 21111111 11212222 4555432 33467888888887774 47899985
No 297
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=35.77 E-value=1.2e+02 Score=26.91 Aligned_cols=64 Identities=11% Similarity=0.238 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEeccccc--C--------chhhHHHHHhcCCcEEEEecCccccchHHHHHHHH
Q 015415 295 MRYHVMQAAKTLVNKGYDPEVIDIRSLKP--F--------DLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAI 359 (407)
Q Consensus 295 ~~~~al~Aa~~L~~~Gi~v~VI~~~~l~P--f--------d~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l 359 (407)
....+..+++.|++.|.++++||+.-+.. + +.+.+.+.++..+.+|++=.-+ .+++...+..++
T Consensus 15 t~~l~~~~~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~sP~Y-~~sip~~LK~~i 88 (171)
T TIGR03567 15 SSALLRHVREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVATPVY-KASYSGVLKALL 88 (171)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEECCcc-cCCCCHHHHHHH
Confidence 34555666677877899999999876422 1 1134566677788887777766 477777777666
No 298
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=35.69 E-value=23 Score=30.05 Aligned_cols=38 Identities=18% Similarity=0.236 Sum_probs=27.2
Q ss_pred eecCCcEEEEEechhH-HHHHHHHHHHhhCCCCceEEEe
Q 015415 281 VRPGEHVTILTYSRMR-YHVMQAAKTLVNKGYDPEVIDI 318 (407)
Q Consensus 281 l~eG~dv~Iia~G~~~-~~al~Aa~~L~~~Gi~v~VI~~ 318 (407)
+.+..|++||++|... ..--+..+.|+++||.+++.|-
T Consensus 51 ~~~~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm~T 89 (114)
T cd05125 51 LEPRPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVDT 89 (114)
T ss_pred ccCCCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEECH
Confidence 3456789999999743 3334556778889999888763
No 299
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=35.54 E-value=2e+02 Score=26.17 Aligned_cols=20 Identities=10% Similarity=0.154 Sum_probs=9.4
Q ss_pred chhhhhhhCCCceEeccchhH
Q 015415 124 TKGLADKYGDLRVLDTPIAEN 144 (407)
Q Consensus 124 ~~~~~~~fgp~R~i~~GIaE~ 144 (407)
.+.|++.+ |+-|+..+|...
T Consensus 18 a~~Lq~~~-~~p~~~l~~D~f 37 (174)
T PF07931_consen 18 ARALQERL-PEPWLHLSVDTF 37 (174)
T ss_dssp HHHHHHHS-SS-EEEEEHHHH
T ss_pred HHHHHHhC-cCCeEEEecChH
Confidence 34455555 555555555533
No 300
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=35.28 E-value=2.2e+02 Score=24.29 Aligned_cols=87 Identities=17% Similarity=0.046 Sum_probs=48.6
Q ss_pred HHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEee----
Q 015415 300 MQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLS---- 375 (407)
Q Consensus 300 l~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig---- 375 (407)
..|++.|++.|++.+ -+.-++++... +.+.+.||++++... +.+..... ....++..++
T Consensus 48 ~~a~~~l~~~Gid~s---~h~s~~l~~~~----~~~aDlIi~m~~~~~---------~~~~~~~~-~~~~~v~~~~~~~~ 110 (141)
T cd00115 48 PRAIAVLAEHGIDIS---GHRARQLTEDD----FDEFDLIITMDESNL---------AELLEPPP-GGRAKVELLGEYAG 110 (141)
T ss_pred HHHHHHHHHcCCCcc---cCeeeeCCHHH----HHhCCEEEEECHHHH---------HHHHhcCC-CCcceEEeHhhhCc
Confidence 345666777898863 35556666543 445789999988652 11211110 0124566666
Q ss_pred ---cCCCCCCCHHHHHHHcCCCHHHHHHHHHHHhC
Q 015415 376 ---SQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ 407 (407)
Q Consensus 376 ---~~d~~~~~~~~l~~~~gl~~~~I~~~i~~ll~ 407 (407)
++|-+... + +.|.-.-++|.++|+++++
T Consensus 111 ~~~i~DP~~~~---~-~~f~~~~~~I~~~v~~l~~ 141 (141)
T cd00115 111 DREVPDPYYGS---L-EAFEEVYDLIEEAIKALLK 141 (141)
T ss_pred CCCCCCCCCCC---h-HHHHHHHHHHHHHHHHHhC
Confidence 55543322 1 2233356788888887763
No 301
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=35.20 E-value=2.4e+02 Score=27.29 Aligned_cols=82 Identities=17% Similarity=0.133 Sum_probs=50.2
Q ss_pred EEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEE-----EecCccccchHHHHHHHHHhc
Q 015415 288 TILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLI-----VEECMRTGGIGASLTAAITEN 362 (407)
Q Consensus 288 ~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvv-----vEe~~~~GGlGs~I~~~l~e~ 362 (407)
++++=+....+...-+++|.+.||++.+|--. .+....++.++|++ +.++....=.|+...+.+...
T Consensus 112 V~v~ESrP~~eG~~~a~~L~~~GI~vtli~Ds--------a~~~~m~~vd~VlvGAd~V~~nG~v~nkvGT~~~Al~A~~ 183 (253)
T PRK06372 112 VYILESRPMLEGIDMAKLLVKSGIDVVLLTDA--------SMCEAVLNVDAVIVGSDSVLYDGGLIHKNGTFPLALCARY 183 (253)
T ss_pred EEEecCCCchHHHHHHHHHHHCCCCEEEEehh--------HHHHHHHhCCEEEECccEEecCCCEeehhhHHHHHHHHHH
Confidence 44444455556667888899999999887422 33344566777666 333333333577777666554
Q ss_pred cccCCCCCeEEeecCCCCC
Q 015415 363 FHDYLDAPIVCLSSQDVPT 381 (407)
Q Consensus 363 ~~~~~~~~v~~ig~~d~~~ 381 (407)
...|+..++....|.
T Consensus 184 ----~~vPv~V~~~s~Kf~ 198 (253)
T PRK06372 184 ----LKKPFYSLTISMKIE 198 (253)
T ss_pred ----cCCCEEEEeeccccC
Confidence 367877766655554
No 302
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=35.01 E-value=2.4e+02 Score=29.35 Aligned_cols=79 Identities=16% Similarity=0.220 Sum_probs=51.0
Q ss_pred EEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhh-----------HHHHHhcCCcEEEEecCccccchHHHH
Q 015415 287 VTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYT-----------IGNSIKKTHRVLIVEECMRTGGIGASL 355 (407)
Q Consensus 287 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~-----------l~~~~~~~~~vvvvEe~~~~GGlGs~I 355 (407)
.+++-+|....+|.+-+.+|.++. .+..|.|||.-. |.+.++.-..-|+|-=+- |||-.-|
T Consensus 161 A~Vil~G~~~deAk~~a~~lAke~------gl~yI~pfDhP~I~aGqgTig~EIl~ql~~~~~AI~vpVGG--GGLiaGI 232 (457)
T KOG1250|consen 161 ATVILSGEDWDEAKAFAKRLAKEN------GLTYIPPFDHPDIWAGQGTIGLEILEQLKEPDGAIVVPVGG--GGLIAGI 232 (457)
T ss_pred CEEEEecccHHHHHHHHHHHHHhc------CceecCCCCCchhhcCcchHHHHHHHhhcCCCCeEEEecCC--chhHHHH
Confidence 356667999999999998887764 445678999742 334444333345554443 7888888
Q ss_pred HHHHHhccccCCCCCeEEeecCC
Q 015415 356 TAAITENFHDYLDAPIVCLSSQD 378 (407)
Q Consensus 356 ~~~l~e~~~~~~~~~v~~ig~~d 378 (407)
+..+.+-+ +.+.-||++.
T Consensus 233 at~vk~~~-----p~vkIIGVEt 250 (457)
T KOG1250|consen 233 ATGVKRVG-----PHVKIIGVET 250 (457)
T ss_pred HHHHHHhC-----CCCceEEEee
Confidence 88887643 3445566643
No 303
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=35.00 E-value=1.1e+02 Score=23.86 Aligned_cols=60 Identities=25% Similarity=0.148 Sum_probs=38.6
Q ss_pred EEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHh--cCCcEEEEecCcc
Q 015415 287 VTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIK--KTHRVLIVEECMR 347 (407)
Q Consensus 287 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~--~~~~vvvvEe~~~ 347 (407)
++|.+. +....+..|.+.|.++|++...|++..-.+-..+...+... .+=.+|++.+...
T Consensus 3 v~iyt~-~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~i 64 (80)
T COG0695 3 VTIYTK-PGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHV 64 (80)
T ss_pred EEEEEC-CCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEE
Confidence 445443 34678888999999999999999988765522222222232 3335777877654
No 304
>PRK10824 glutaredoxin-4; Provisional
Probab=34.66 E-value=1.1e+02 Score=25.82 Aligned_cols=64 Identities=20% Similarity=0.177 Sum_probs=43.3
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhc-----CCcEEEEecCccccchHH
Q 015415 284 GEHVTILTYS----RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKK-----THRVLIVEECMRTGGIGA 353 (407)
Q Consensus 284 G~dv~Iia~G----~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~-----~~~vvvvEe~~~~GGlGs 353 (407)
..+|+|++-| +....+..|.+.|.+.|++..+||+-. |. .+++.++. |=.-|.|.... .||...
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~----d~-~~~~~l~~~sg~~TVPQIFI~G~~-IGG~dd 86 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQ----NP-DIRAELPKYANWPTFPQLWVDGEL-VGGCDI 86 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecC----CH-HHHHHHHHHhCCCCCCeEEECCEE-EcChHH
Confidence 4678999988 478889999999999999999998753 22 24444332 22235555554 377654
No 305
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=34.66 E-value=93 Score=23.49 Aligned_cols=60 Identities=15% Similarity=0.076 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhc-CCcEEEEecCccccchHHHH
Q 015415 294 RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKK-THRVLIVEECMRTGGIGASL 355 (407)
Q Consensus 294 ~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~-~~~vvvvEe~~~~GGlGs~I 355 (407)
+....+.+|.+.|++.|++.+.+|+..- |-..+.+.+.... +=.+|++++.. .||+.+..
T Consensus 7 ~~Cp~C~~a~~~L~~~~i~~~~~di~~~-~~~~~~~~~~~g~~~vP~i~i~g~~-igg~~~~~ 67 (79)
T TIGR02181 7 PYCPYCTRAKALLSSKGVTFTEIRVDGD-PALRDEMMQRSGRRTVPQIFIGDVH-VGGCDDLY 67 (79)
T ss_pred CCChhHHHHHHHHHHcCCCcEEEEecCC-HHHHHHHHHHhCCCCcCEEEECCEE-EcChHHHH
Confidence 5667888999999999999999998642 2111222222111 22466777665 58876543
No 306
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=34.42 E-value=1.3e+02 Score=30.41 Aligned_cols=74 Identities=18% Similarity=0.185 Sum_probs=52.3
Q ss_pred ecCCcEEEEEech-hHHHHHHHHHHHhhCCCC-ceEEEecccccCchhhH-----HHHHhcCCcEEEEecCccccchHHH
Q 015415 282 RPGEHVTILTYSR-MRYHVMQAAKTLVNKGYD-PEVIDIRSLKPFDLYTI-----GNSIKKTHRVLIVEECMRTGGIGAS 354 (407)
Q Consensus 282 ~eG~dv~Iia~G~-~~~~al~Aa~~L~~~Gi~-v~VI~~~~l~Pfd~~~l-----~~~~~~~~~vvvvEe~~~~GGlGs~ 354 (407)
+.++ =+|+++|. ...+..+|++.|+++|.. +.++.+.+..|-|.+.+ .++....+..|=+-||.. | +...
T Consensus 145 ~~~k-PiIlSTGma~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~Fn~~vGlSDHT~-g-~~a~ 221 (347)
T COG2089 145 KKGK-PIILSTGMATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAFNAIVGLSDHTL-G-ILAP 221 (347)
T ss_pred hcCC-CEEEEcccccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHhCCccccccCcc-c-hhHH
Confidence 3455 46889995 568899999999998665 88889999999887653 333344577788888874 4 5444
Q ss_pred HHHH
Q 015415 355 LTAA 358 (407)
Q Consensus 355 I~~~ 358 (407)
+++.
T Consensus 222 l~Av 225 (347)
T COG2089 222 LAAV 225 (347)
T ss_pred HHHH
Confidence 5443
No 307
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=34.13 E-value=1.7e+02 Score=29.42 Aligned_cols=73 Identities=15% Similarity=0.111 Sum_probs=49.0
Q ss_pred CCcEEEEEech-hHHHHHHHHHHHhhCCCC---ceEEEecccccCchhh-----HHHHHhcCCcEEEEecCccccchHHH
Q 015415 284 GEHVTILTYSR-MRYHVMQAAKTLVNKGYD---PEVIDIRSLKPFDLYT-----IGNSIKKTHRVLIVEECMRTGGIGAS 354 (407)
Q Consensus 284 G~dv~Iia~G~-~~~~al~Aa~~L~~~Gi~---v~VI~~~~l~Pfd~~~-----l~~~~~~~~~vvvvEe~~~~GGlGs~ 354 (407)
|+. +|+++|. ...+..+|++.+++.|-+ +.++.+.+-.|-+.+. |..+-+.++..|-+-+|. .|....
T Consensus 133 gkP-vilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~~pVG~SdHt--~G~~~~ 209 (329)
T TIGR03569 133 GKP-VILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFDLPVGYSDHT--LGIEAP 209 (329)
T ss_pred CCc-EEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhCCCEEECCCC--ccHHHH
Confidence 444 6778884 668899999999888864 8888888887866543 332223456556677776 355555
Q ss_pred HHHHH
Q 015415 355 LTAAI 359 (407)
Q Consensus 355 I~~~l 359 (407)
+++..
T Consensus 210 ~aAva 214 (329)
T TIGR03569 210 IAAVA 214 (329)
T ss_pred HHHHH
Confidence 55554
No 308
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=34.09 E-value=3.4e+02 Score=25.13 Aligned_cols=114 Identities=9% Similarity=-0.065 Sum_probs=53.9
Q ss_pred CcEEEEEechhHHHHHHHHHHHhhCCC--CceEEEec-ccc-cCchhhHHHHHhcCCc---EEEEecCc----cccchHH
Q 015415 285 EHVTILTYSRMRYHVMQAAKTLVNKGY--DPEVIDIR-SLK-PFDLYTIGNSIKKTHR---VLIVEECM----RTGGIGA 353 (407)
Q Consensus 285 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi--~v~VI~~~-~l~-Pfd~~~l~~~~~~~~~---vvvvEe~~----~~GGlGs 353 (407)
..+++||.|..+...+-.++.+.+++- ++.++-.. .-. .+-.+.+.+..+.... +.++.+.. ..|.. .
T Consensus 110 ~~~v~iagG~GiaP~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~-g 188 (238)
T cd06211 110 RPIIFIAGGSGLSSPRSMILDLLERGDTRKITLFFGARTRAELYYLDEFEALEKDHPNFKYVPALSREPPESNWKGFT-G 188 (238)
T ss_pred CCEEEEeCCcCHHHHHHHHHHHHhcCCCCcEEEEEecCChhhhccHHHHHHHHHhCCCeEEEEEECCCCCCcCccccc-C
Confidence 679999999888777777776665543 45554321 111 1223445554443322 22333211 01111 1
Q ss_pred HHHHHHHhccccCCCCCeEEeecCCCCCCCHHHHHHHcCCCHHHHH
Q 015415 354 SLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIV 399 (407)
Q Consensus 354 ~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~gl~~~~I~ 399 (407)
.+.+.+.+............++.+..+......+....|++++.|.
T Consensus 189 ~v~~~l~~~~~~~~~~~~vyvCGp~~m~~~~~~~L~~~Gv~~~~i~ 234 (238)
T cd06211 189 FVHDAAKKHFKNDFRGHKAYLCGPPPMIDACIKTLMQGRLFERDIY 234 (238)
T ss_pred cHHHHHHHhcccccccCEEEEECCHHHHHHHHHHHHHcCCCHHHcc
Confidence 2222222210000112345666665554444444456788888763
No 309
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=33.39 E-value=1.8e+02 Score=26.55 Aligned_cols=112 Identities=7% Similarity=-0.048 Sum_probs=54.0
Q ss_pred CCcEEEEEechhHHHHHHHHHHHhhCC--CCceEE-Eecccc-cCchhhHHHHHhcCC-cEEEEecCccccchHHHHHHH
Q 015415 284 GEHVTILTYSRMRYHVMQAAKTLVNKG--YDPEVI-DIRSLK-PFDLYTIGNSIKKTH-RVLIVEECMRTGGIGASLTAA 358 (407)
Q Consensus 284 G~dv~Iia~G~~~~~al~Aa~~L~~~G--i~v~VI-~~~~l~-Pfd~~~l~~~~~~~~-~vvvvEe~~~~GGlGs~I~~~ 358 (407)
..++++|+.|+.+...+..++.+.+++ -++.++ ..++-. .+-.+.|.+..++.. .+.++... ..+-.+. ...
T Consensus 95 ~~~~vlia~GtGiap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~~~--~~~ 171 (216)
T cd06198 95 RARQIWIAGGIGITPFLALLEALAARGDARPVTLFYCVRDPEDAVFLDELRALAAAAGVVLHVIDSP-SDGRLTL--EQL 171 (216)
T ss_pred CceEEEEccccCHHHHHHHHHHHHhcCCCceEEEEEEECCHHHhhhHHHHHHHHHhcCeEEEEEeCC-CCcccch--hhh
Confidence 467999999988877777777665544 345544 333321 122344555444332 22223222 1111111 011
Q ss_pred HHhccccCCCCCeEEeecCCCCCCCHHHHHHHcCCCHHHHH
Q 015415 359 ITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIV 399 (407)
Q Consensus 359 l~e~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~gl~~~~I~ 399 (407)
+.+.. .........++.+..++.....+....|++++.|.
T Consensus 172 ~~~~~-~~~~~~~vyicGp~~m~~~v~~~l~~~Gv~~~~I~ 211 (216)
T cd06198 172 VRALV-PDLADADVWFCGPPGMADALEKGLRALGVPARRFH 211 (216)
T ss_pred hhhcC-CCcCCCeEEEECcHHHHHHHHHHHHHcCCChHhcc
Confidence 10110 00122345677766555544334445788888874
No 310
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=33.30 E-value=3.8e+02 Score=24.97 Aligned_cols=131 Identities=15% Similarity=0.093 Sum_probs=65.6
Q ss_pred CCcEEEeeCCHHHHHHHHHHHHhcCCCEEEeeccccccCCCCCCCccccccCCceEEe-ecCCcEEEEEechhHHHHHHH
Q 015415 224 PGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMV-RPGEHVTILTYSRMRYHVMQA 302 (407)
Q Consensus 224 Pgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir~~r~~y~~~~~v~~~~~~~~~Gk~~vl-~eG~dv~Iia~G~~~~~al~A 302 (407)
|+..|+.+++.+-...+-..|-...-|+++..+... + ..+-+.+ ..|.++..+ +.....+.+.
T Consensus 49 ~~~~vv~~ssGN~g~alA~~a~~~g~~~~v~~p~~~-------~-------~~~~~~~~~~Ga~v~~~--~~~~~~~~~~ 112 (244)
T cd00640 49 PKGVIIESTGGNTGIALAAAAARLGLKCTIVMPEGA-------S-------PEKVAQMRALGAEVVLV--PGDFDDAIAL 112 (244)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCC-------C-------HHHHHHHHHCCCEEEEE--CCCHHHHHHH
Confidence 678899998877777666666666778887644321 0 0111111 124444333 3336667777
Q ss_pred HHHHhhCCCCceEEEecccccCchh-------hHHHHHhc-CCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEe
Q 015415 303 AKTLVNKGYDPEVIDIRSLKPFDLY-------TIGNSIKK-THRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCL 374 (407)
Q Consensus 303 a~~L~~~Gi~v~VI~~~~l~Pfd~~-------~l~~~~~~-~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~i 374 (407)
++++.++.-+.-.++.. .+|...+ .|.+.+.. .-..+++--+. ||.-.-+...+.+. .+.+..+
T Consensus 113 a~~~~~~~~~~~~~~~~-~n~~~~~g~~~~~~Ei~~q~~~~~~d~ivvp~Gt--Gg~~~G~~~~~~~~-----~~~~~ii 184 (244)
T cd00640 113 AKELAEEDPGAYYVNQF-DNPANIAGQGTIGLEILEQLGGQKPDAVVVPVGG--GGNIAGIARALKEL-----LPNVKVI 184 (244)
T ss_pred HHHHHHhCCCCEecCCC-CCHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCc--cHHHHHHHHHHHHh-----CCCCEEE
Confidence 77776654333222211 2332221 22233333 22345554443 66666666666543 2344556
Q ss_pred ecCC
Q 015415 375 SSQD 378 (407)
Q Consensus 375 g~~d 378 (407)
++..
T Consensus 185 ~v~~ 188 (244)
T cd00640 185 GVEP 188 (244)
T ss_pred EEee
Confidence 6644
No 311
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=33.26 E-value=1.7e+02 Score=22.52 Aligned_cols=71 Identities=17% Similarity=0.223 Sum_probs=42.0
Q ss_pred EEEEEechhHHHHHHHHHHHhh-----CCCCceEEEecccccCchhhHHHHHh---cCCcEEEEecCccccchHHHHHHH
Q 015415 287 VTILTYSRMRYHVMQAAKTLVN-----KGYDPEVIDIRSLKPFDLYTIGNSIK---KTHRVLIVEECMRTGGIGASLTAA 358 (407)
Q Consensus 287 v~Iia~G~~~~~al~Aa~~L~~-----~Gi~v~VI~~~~l~Pfd~~~l~~~~~---~~~~vvvvEe~~~~GGlGs~I~~~ 358 (407)
++|.+. +....|.+|.+.|++ .|+..+.+|+.. .+...+.+.+... .+=..|+++... .||+. +|.++
T Consensus 3 v~iy~~-~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~-~~~~~~el~~~~~~~~~~vP~ifi~g~~-igg~~-~~~~~ 78 (85)
T PRK11200 3 VVIFGR-PGCPYCVRAKELAEKLSEERDDFDYRYVDIHA-EGISKADLEKTVGKPVETVPQIFVDQKH-IGGCT-DFEAY 78 (85)
T ss_pred EEEEeC-CCChhHHHHHHHHHhhcccccCCcEEEEECCC-ChHHHHHHHHHHCCCCCcCCEEEECCEE-EcCHH-HHHHH
Confidence 444443 345566666666666 799999999875 3333445555444 232456666554 57864 45555
Q ss_pred HHh
Q 015415 359 ITE 361 (407)
Q Consensus 359 l~e 361 (407)
+.+
T Consensus 79 ~~~ 81 (85)
T PRK11200 79 VKE 81 (85)
T ss_pred HHH
Confidence 554
No 312
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=33.05 E-value=70 Score=26.71 Aligned_cols=43 Identities=14% Similarity=0.035 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCC
Q 015415 294 RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTH 337 (407)
Q Consensus 294 ~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~ 337 (407)
+....|.+|.+.|++.|+..+++|+.. .|...+.|.+.++..+
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~el~~l~~~~~ 49 (117)
T TIGR01617 7 PNCTTCKKARRWLEANGIEYQFIDIGE-DGPTREELLDILSLLE 49 (117)
T ss_pred CCCHHHHHHHHHHHHcCCceEEEecCC-ChhhHHHHHHHHHHcC
Confidence 566788899999999999999999864 6888888887777665
No 313
>PRK06703 flavodoxin; Provisional
Probab=32.36 E-value=1.3e+02 Score=25.96 Aligned_cols=84 Identities=8% Similarity=0.051 Sum_probs=42.7
Q ss_pred EEEechhH----HHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhcc-
Q 015415 289 ILTYSRMR----YHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENF- 363 (407)
Q Consensus 289 Iia~G~~~----~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~- 363 (407)
+|.|+++. ..|...++.|++.|+.+.+.++....+- .+.+.+.|++.=..+..|-+-..+..++....
T Consensus 5 ~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~-------~l~~~d~viigspt~~~g~~p~~~~~f~~~l~~ 77 (151)
T PRK06703 5 LIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGMDAE-------ELLAYDGIILGSYTWGDGDLPYEAEDFHEDLEN 77 (151)
T ss_pred EEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhCCHH-------HHhcCCcEEEEECCCCCCcCcHHHHHHHHHHhc
Confidence 44445444 5555555667777999999887654321 24456666654433323434444444433211
Q ss_pred ccCCCCCeEEeecCCC
Q 015415 364 HDYLDAPIVCLSSQDV 379 (407)
Q Consensus 364 ~~~~~~~v~~ig~~d~ 379 (407)
......++..+|.-+.
T Consensus 78 ~~l~~k~~~vfg~g~~ 93 (151)
T PRK06703 78 IDLSGKKVAVFGSGDT 93 (151)
T ss_pred CCCCCCEEEEEccCCC
Confidence 0001234566665443
No 314
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=31.99 E-value=3.4e+02 Score=24.14 Aligned_cols=70 Identities=23% Similarity=0.151 Sum_probs=39.9
Q ss_pred cEEEEEec-hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCC----cEEEEecCccccchHHHHHHH
Q 015415 286 HVTILTYS-RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTH----RVLIVEECMRTGGIGASLTAA 358 (407)
Q Consensus 286 dv~Iia~G-~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~----~vvvvEe~~~~GGlGs~I~~~ 358 (407)
++.||+-| +-...+.++.+.|++-|+.+++ .+-+...-+++ +.+.+++.. +|++.=-+. .++|..-|+..
T Consensus 2 ~V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~-~V~saHR~p~~-l~~~~~~~~~~~~~viIa~AG~-~a~Lpgvva~~ 76 (150)
T PF00731_consen 2 KVAIIMGSTSDLPIAEEAAKTLEEFGIPYEV-RVASAHRTPER-LLEFVKEYEARGADVIIAVAGM-SAALPGVVASL 76 (150)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHHTT-EEEE-EE--TTTSHHH-HHHHHHHTTTTTESEEEEEEES-S--HHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHcCCCEEE-EEEeccCCHHH-HHHHHHHhccCCCEEEEEECCC-cccchhhheec
Confidence 45555433 5778899999999999988875 56666555544 344554431 355554444 36666555544
No 315
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=31.84 E-value=4.7e+02 Score=25.15 Aligned_cols=81 Identities=20% Similarity=0.266 Sum_probs=45.4
Q ss_pred CcEEEEEec-hhHHHHHHHHHHHhhCCCCc-eEEEecc--c-ccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHH
Q 015415 285 EHVTILTYS-RMRYHVMQAAKTLVNKGYDP-EVIDIRS--L-KPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAI 359 (407)
Q Consensus 285 ~dv~Iia~G-~~~~~al~Aa~~L~~~Gi~v-~VI~~~~--l-~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l 359 (407)
..+-|++.| +-+..|.||+..++.-|+++ .++|+-- | +-|+ .+.+...+.-.+++|=-++ .|-|-+-|+..+
T Consensus 118 g~vgvlsAGTSDlPvAeEa~~tae~lG~ev~~~~DvGVAGiHRLl~--~l~r~~~~~~~~lIVvAGM-EGaLPsvvagLv 194 (254)
T COG1691 118 GKVGVLSAGTSDLPVAEEAAVTAEELGVEVQKVYDVGVAGIHRLLS--ALKRLKIEDADVLIVVAGM-EGALPSVVAGLV 194 (254)
T ss_pred ceEEEEecCCCCcchHHHHHHHHHHhCceEEEEEeeccchHHhhhh--HHHHHHhhCCCeEEEEccc-ccchHHHHHhcc
Confidence 356688988 46777888888777778764 3344321 1 1122 1222222233456666666 377777666543
Q ss_pred HhccccCCCCCeEEeecCC
Q 015415 360 TENFHDYLDAPIVCLSSQD 378 (407)
Q Consensus 360 ~e~~~~~~~~~v~~ig~~d 378 (407)
+.|+ ||+|.
T Consensus 195 --------D~PV--IavPT 203 (254)
T COG1691 195 --------DVPV--IAVPT 203 (254)
T ss_pred --------CCCe--Eeccc
Confidence 5666 66653
No 316
>PRK00170 azoreductase; Reviewed
Probab=31.80 E-value=1.7e+02 Score=26.38 Aligned_cols=63 Identities=14% Similarity=0.082 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhhC--CCCceEEEecccc-c-Cc------------------------hhhHHHHHhcCCcEEEEecCcc
Q 015415 296 RYHVMQAAKTLVNK--GYDPEVIDIRSLK-P-FD------------------------LYTIGNSIKKTHRVLIVEECMR 347 (407)
Q Consensus 296 ~~~al~Aa~~L~~~--Gi~v~VI~~~~l~-P-fd------------------------~~~l~~~~~~~~~vvvvEe~~~ 347 (407)
...+..+++.|+++ |.+++++|+.... | ++ .+.+.+.++..+.||++=.-+
T Consensus 19 ~~l~~~~~~~l~~~~~~~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~i~~AD~iV~~sP~y- 97 (201)
T PRK00170 19 MQLGDAFIEAYKEAHPDDEVTVRDLAAEPIPVLDGEVVGALGKSAETLTPRQQEAVALSDELLEEFLAADKIVIAAPMY- 97 (201)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECCCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHHCCEEEEeeccc-
Confidence 34555667788887 8999999997553 3 21 122445577788877776655
Q ss_pred ccchHHHHHHHH
Q 015415 348 TGGIGASLTAAI 359 (407)
Q Consensus 348 ~GGlGs~I~~~l 359 (407)
.+++-+.+..++
T Consensus 98 ~~~~pa~LK~~i 109 (201)
T PRK00170 98 NFSIPTQLKAYI 109 (201)
T ss_pred ccCCcHHHHHHH
Confidence 367777776665
No 317
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=31.49 E-value=2.7e+02 Score=28.32 Aligned_cols=75 Identities=16% Similarity=0.212 Sum_probs=40.5
Q ss_pred EEechhHHHHHHHHHHHhhC-CCCceEEEecccccCchhhH--------HHHHhcCC---cEEEEecCccccchHHHHHH
Q 015415 290 LTYSRMRYHVMQAAKTLVNK-GYDPEVIDIRSLKPFDLYTI--------GNSIKKTH---RVLIVEECMRTGGIGASLTA 357 (407)
Q Consensus 290 ia~G~~~~~al~Aa~~L~~~-Gi~v~VI~~~~l~Pfd~~~l--------~~~~~~~~---~vvvvEe~~~~GGlGs~I~~ 357 (407)
+=+|.....+.+++++|.++ | +..+.|||...+ .|.+.... ..|+|-=+- |||-+-|+.
T Consensus 124 il~g~~~dda~~~a~~~a~~~G-------~~~i~pfD~p~viAGQGTi~lEileq~~~~~d~v~vpvGG--GGLisGia~ 194 (347)
T COG1171 124 ILHGDNFDDAYAAAEELAEEEG-------LTFVPPFDDPDVIAGQGTIALEILEQLPDLPDAVFVPVGG--GGLISGIAT 194 (347)
T ss_pred EEECCCHHHHHHHHHHHHHHcC-------CEEeCCCCCcceeecccHHHHHHHHhccccCCEEEEecCc--cHHHHHHHH
Confidence 34466777777777777543 3 234567765421 23333321 234444443 677777777
Q ss_pred HHHhccccCCCCCeEEeecCC
Q 015415 358 AITENFHDYLDAPIVCLSSQD 378 (407)
Q Consensus 358 ~l~e~~~~~~~~~v~~ig~~d 378 (407)
++... .+.+..||++.
T Consensus 195 ~~k~~-----~p~~~vIGVEp 210 (347)
T COG1171 195 ALKAL-----SPEIKVIGVEP 210 (347)
T ss_pred HHHHh-----CCCCeEEEEee
Confidence 76552 33455566644
No 318
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=31.44 E-value=49 Score=28.00 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=27.5
Q ss_pred eecCCcEEEEEech--hHHHHHHHHHHHhhCCCCceEEEecc
Q 015415 281 VRPGEHVTILTYSR--MRYHVMQAAKTLVNKGYDPEVIDIRS 320 (407)
Q Consensus 281 l~eG~dv~Iia~G~--~~~~al~Aa~~L~~~Gi~v~VI~~~~ 320 (407)
+-++.+++||++|. ++....+|.+.++++| ++|+-.+|
T Consensus 58 lee~~E~ivvGTG~~G~l~l~~ea~e~~r~k~--~~vi~~pT 97 (121)
T COG1504 58 LEEGPEVIVVGTGQSGMLELSEEAREFFRKKG--CEVIELPT 97 (121)
T ss_pred HhcCCcEEEEecCceeEEEeCHHHHHHHHhcC--CeEEEeCC
Confidence 34689999999994 5566667777777774 66776555
No 319
>PRK10329 glutaredoxin-like protein; Provisional
Probab=31.27 E-value=2.3e+02 Score=22.05 Aligned_cols=33 Identities=21% Similarity=0.391 Sum_probs=26.0
Q ss_pred EEEEEechhHHHHHHHHHHHhhCCCCceEEEecc
Q 015415 287 VTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRS 320 (407)
Q Consensus 287 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~ 320 (407)
++|.+. .....|..+.+.|++.||..+.+|+..
T Consensus 3 v~lYt~-~~Cp~C~~ak~~L~~~gI~~~~idi~~ 35 (81)
T PRK10329 3 ITIYTR-NDCVQCHATKRAMESRGFDFEMINVDR 35 (81)
T ss_pred EEEEeC-CCCHhHHHHHHHHHHCCCceEEEECCC
Confidence 555553 445788888899999999999999875
No 320
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=31.08 E-value=1.2e+02 Score=27.23 Aligned_cols=51 Identities=18% Similarity=0.130 Sum_probs=33.8
Q ss_pred EEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhH--HHHHhcCC
Q 015415 287 VTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTI--GNSIKKTH 337 (407)
Q Consensus 287 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l--~~~~~~~~ 337 (407)
+++++.|..-..++.++..|.++|++|.|+-+.-..+++++.- .+.+++.+
T Consensus 29 ~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g 81 (169)
T PF03853_consen 29 LILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMG 81 (169)
T ss_dssp EEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT
T ss_pred EEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcC
Confidence 4566777888899999999988999988865555445554432 23344444
No 321
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=31.06 E-value=2.3e+02 Score=25.93 Aligned_cols=68 Identities=9% Similarity=0.127 Sum_probs=42.0
Q ss_pred echhHHHHHHHHHHHhhC-CCCceEEEecccccCchhhH---------------HHHHhcCCcEEEEecCccccchHHHH
Q 015415 292 YSRMRYHVMQAAKTLVNK-GYDPEVIDIRSLKPFDLYTI---------------GNSIKKTHRVLIVEECMRTGGIGASL 355 (407)
Q Consensus 292 ~G~~~~~al~Aa~~L~~~-Gi~v~VI~~~~l~Pfd~~~l---------------~~~~~~~~~vvvvEe~~~~GGlGs~I 355 (407)
+|.....|..+++.+++. |.++++++++...| .+.+ .+.+.+++.|++.=..+ .|.+...+
T Consensus 11 ~G~T~~lA~~ia~g~~~~~g~ev~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GSPty-~g~~~~~l 87 (197)
T TIGR01755 11 YGHIETMARAVAEGAREVDGAEVVVKRVPETVP--EEVAEKSHGKTDQTAPVATPQELADYDAIIFGTPTR-FGNMASQM 87 (197)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEeccccCc--HHHHHhccCCcccCCccCCHHHHHHCCEEEEEeccc-ccCccHHH
Confidence 455666777777778764 99999999865422 1111 13355666666555444 47777777
Q ss_pred HHHHHhc
Q 015415 356 TAAITEN 362 (407)
Q Consensus 356 ~~~l~e~ 362 (407)
..++-..
T Consensus 88 k~fld~~ 94 (197)
T TIGR01755 88 RNFLDQT 94 (197)
T ss_pred HHHHHhc
Confidence 7766553
No 322
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=30.59 E-value=5.4e+02 Score=29.57 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHhcC-CCEEEeec
Q 015415 233 TPYNAKGLMKAAIRSE-NPVILFEH 256 (407)
Q Consensus 233 d~~e~~~~~~~a~~~~-~Pv~ir~~ 256 (407)
|+.++..++..|.+.+ .|++|+-.
T Consensus 362 D~~~I~~A~~~A~~~~grPTvIlA~ 386 (885)
T TIGR00759 362 DPRKVYAAYAAAQEHKGQPTVILAK 386 (885)
T ss_pred CHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 7888888888777654 69998743
No 323
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=30.44 E-value=4.3e+02 Score=24.21 Aligned_cols=74 Identities=15% Similarity=0.131 Sum_probs=47.5
Q ss_pred cEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccC--chhhHHHHHhcC--CcEEE-EecCc-cccchHHHHHHHH
Q 015415 286 HVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPF--DLYTIGNSIKKT--HRVLI-VEECM-RTGGIGASLTAAI 359 (407)
Q Consensus 286 dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pf--d~~~l~~~~~~~--~~vvv-vEe~~-~~GGlGs~I~~~l 359 (407)
+++||+=|-.. |.+|+|...+ .+..+.|+...=+|- .-+.|.++++++ +.|+| ++|.- .--|.|+....++
T Consensus 1 kVIlvTDGD~~--A~ravE~aa~-~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v 77 (180)
T PF14097_consen 1 KVILVTDGDEY--AKRAVEIAAK-NIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYV 77 (180)
T ss_pred CEEEEECChHH--HHHHHHHHHH-HhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHH
Confidence 36778887643 4445444432 457888888877764 456777888865 45554 45543 3347899888888
Q ss_pred Hhc
Q 015415 360 TEN 362 (407)
Q Consensus 360 ~e~ 362 (407)
..+
T Consensus 78 ~~h 80 (180)
T PF14097_consen 78 ANH 80 (180)
T ss_pred HcC
Confidence 764
No 324
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=30.27 E-value=1.9e+02 Score=30.49 Aligned_cols=105 Identities=14% Similarity=0.091 Sum_probs=64.2
Q ss_pred ccchhHHHHHHHHHHHhcCCeeEEEe--cchhH---HHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCCcCcc
Q 015415 139 TPIAENSFTGMGIGAAMTGLRPIVEG--MNMGF---LLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHS 213 (407)
Q Consensus 139 ~GIaE~~~vg~A~GlA~~G~rp~~~t--~~~~f---~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G~tHs 213 (407)
.|--||++.-+|-|.|+.-.+|=++. ..+.- +....|.+ +- .+|+|+....-+....|..--
T Consensus 134 LPrHEQgaghaAegYaR~sgKPGvvlvTSGPGATNvvtp~ADAl----aD---------g~PlVvftGQVptsaIGtDAF 200 (675)
T KOG4166|consen 134 LPRHEQGAGHAAEGYARSSGKPGVVLVTSGPGATNVVTPLADAL----AD---------GVPLVVFTGQVPTSAIGTDAF 200 (675)
T ss_pred ccccccccchhhhhhhhhcCCCcEEEEecCCCcccccchhhHHh----hc---------CCcEEEEecccchhhcccchh
Confidence 46689999999999999966664442 23322 22333333 21 678877631111112222111
Q ss_pred ch--HHHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----cCCCEEEeecc
Q 015415 214 QR--LESYFQSIPGIQMVACSTPYNAKGLMKAAIR-----SENPVILFEHV 257 (407)
Q Consensus 214 q~--~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~-----~~~Pv~ir~~r 257 (407)
|. +-.+-|++-.|.|+ -.|.+|+-.-+++|+. .++||.+-+++
T Consensus 201 QEadiVgisRScTKwNvm-VkdVedlPrrI~EAFeiATSGRPGPVLVDlPK 250 (675)
T KOG4166|consen 201 QEADIVGISRSCTKWNVM-VKDVEDLPRRIEEAFEIATSGRPGPVLVDLPK 250 (675)
T ss_pred ccCCeeeeeeccceehee-eecHHHhhHHHHHHhhhhccCCCCCeEeeCcH
Confidence 21 12566788778655 4788899999999987 37899998775
No 325
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=30.10 E-value=3.3e+02 Score=22.72 Aligned_cols=112 Identities=16% Similarity=0.239 Sum_probs=58.1
Q ss_pred cEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCc--hhhHHHHHhc---CCcEEEEecCccccchHHHHHHHHH
Q 015415 286 HVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFD--LYTIGNSIKK---THRVLIVEECMRTGGIGASLTAAIT 360 (407)
Q Consensus 286 dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd--~~~l~~~~~~---~~~vvvvEe~~~~GGlGs~I~~~l~ 360 (407)
+++|++.|.......++++.+-.+.-++..+++..=..++ .+.+.+.+++ .+.++++=|=. ||=-..++..+.
T Consensus 2 ~ili~sHG~~A~gi~~~~~~i~G~~~~i~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~viil~Dl~--GGSp~n~~~~~~ 79 (122)
T cd00006 2 GIIIATHGGFASGLLNSAEMILGEQENVEAIDFPPGESPDDLLEKIKAALAELDSGEGVLILTDLF--GGSPNNAAARLS 79 (122)
T ss_pred eEEEEcCHHHHHHHHHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCcEEEEEeCC--CCCHHHHHHHHH
Confidence 4789999988888999999886544466677655322221 1334555554 34566555543 332233333333
Q ss_pred hccccCCCCCeEEeecCCCCCCCHHHHHHHcCCCHHHHHHHHHH
Q 015415 361 ENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQ 404 (407)
Q Consensus 361 e~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~ 404 (407)
.. ..++..+..-+.+.--.-......+.+.+.+++.+.+
T Consensus 80 ~~-----~~~~~visG~nlpmlle~~~~~~~~~~~~e~~~~~~~ 118 (122)
T cd00006 80 ME-----HPPVEVIAGVNLPMLLEAARARELGLSLDELVENALE 118 (122)
T ss_pred hc-----CCCEEEEEccCHHHHHHHHHccccCCCHHHHHHHHHH
Confidence 21 1334445543322111111111224677888777655
No 326
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=29.55 E-value=60 Score=29.12 Aligned_cols=44 Identities=16% Similarity=0.004 Sum_probs=30.2
Q ss_pred HHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecC
Q 015415 299 VMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEEC 345 (407)
Q Consensus 299 al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~ 345 (407)
..++++.|+++|+.+-.|-+ ...+.+.|++.....++++.+.++
T Consensus 123 ~~~~a~~l~~~gv~i~~vgv---~~~~~~~L~~iA~~~~~~f~~~~~ 166 (185)
T cd01474 123 PEHEAKLSRKLGAIVYCVGV---TDFLKSQLINIADSKEYVFPVTSG 166 (185)
T ss_pred hHHHHHHHHHcCCEEEEEee---chhhHHHHHHHhCCCCeeEecCcc
Confidence 45566778888886555554 567888888887777777745444
No 327
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=29.46 E-value=4.1e+02 Score=24.25 Aligned_cols=114 Identities=10% Similarity=-0.030 Sum_probs=56.1
Q ss_pred CCcEEEEEechhHHHHHHHHHHHhhCC--CCceEE-Eeccccc-CchhhHHHHHhcCCcE---EEEecC--ccccchHHH
Q 015415 284 GEHVTILTYSRMRYHVMQAAKTLVNKG--YDPEVI-DIRSLKP-FDLYTIGNSIKKTHRV---LIVEEC--MRTGGIGAS 354 (407)
Q Consensus 284 G~dv~Iia~G~~~~~al~Aa~~L~~~G--i~v~VI-~~~~l~P-fd~~~l~~~~~~~~~v---vvvEe~--~~~GGlGs~ 354 (407)
+..+++||.|..+...+..++.|.+++ .++.++ ..+...- +-.+.+.+..++...+ +++.+. ...|. ...
T Consensus 98 ~~~ivliagG~GiaP~~~~l~~l~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~g~-~g~ 176 (224)
T cd06189 98 DRPLILIAGGTGFAPIKSILEHLLAQGSKRPIHLYWGARTEEDLYLDELLEAWAEAHPNFTYVPVLSEPEEGWQGR-TGL 176 (224)
T ss_pred CCCEEEEecCcCHHHHHHHHHHHHhcCCCCCEEEEEecCChhhccCHHHHHHHHHhCCCeEEEEEeCCCCcCCccc-ccc
Confidence 467999999988888777777765543 345554 2233211 2234555555444332 233221 11121 112
Q ss_pred HHHHHHhccccCCCCCeEEeecCCCCCCCHHHHHHHcCCCHHHHH
Q 015415 355 LTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIV 399 (407)
Q Consensus 355 I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~gl~~~~I~ 399 (407)
+.+.+.+... ........++.+..+...........|++++.|.
T Consensus 177 v~~~l~~~~~-~~~~~~v~vCGp~~m~~~~~~~l~~~G~~~~~i~ 220 (224)
T cd06189 177 VHEAVLEDFP-DLSDFDVYACGSPEMVYAARDDFVEKGLPEENFF 220 (224)
T ss_pred HHHHHHhhcc-CccccEEEEECCHHHHHHHHHHHHHcCCCHHHcc
Confidence 3333322110 0112345666665555444444455788888774
No 328
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=28.79 E-value=30 Score=28.85 Aligned_cols=34 Identities=12% Similarity=0.125 Sum_probs=25.4
Q ss_pred CcEEEEEechhH-HHHHHHHHHHhhCCCCceEEEe
Q 015415 285 EHVTILTYSRMR-YHVMQAAKTLVNKGYDPEVIDI 318 (407)
Q Consensus 285 ~dv~Iia~G~~~-~~al~Aa~~L~~~Gi~v~VI~~ 318 (407)
.|++||++|... ..-.+..+.|++.||.+++.|-
T Consensus 53 peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T 87 (109)
T cd00248 53 PDILLIGTGAEIAFLPRALRAALRAAGIGVEVMST 87 (109)
T ss_pred CCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCc
Confidence 789999999744 2334556788899999888764
No 329
>cd06064 H2MP_F420-Reduc Endopeptidases belonging to F420-reducing hydrogenases group. These hydrogenases from methanogens are encoded by the fru, frc, or frh genes. Sequence comparison indicates that fruD and frcD gene products from Methanococcus voltae are similar to HycI protease of Escherichia coli and are putatively involved in the C-terminal processing of large subunits (FruA and FrcA respectively). FrhD (F420 reducing hydrogenase delta subunit) enzyme belongs to the gene cluster of 8-hydroxy-5-deazaflavin (F420) reducing hydrogenase (FRH) from the thermophilic methanogen Methanobacterium thermoautotrophicum delta H. FrhD subunit is putatively involved in the processing of the coenzyme F420 hydrogenase-processing. It is similar to those frhD genes found in Methanomicrobia and Methanobacteria. It is different from the FrhD conserved domain found in methyl viologen-reducing hydrogenase and F420-non-reducing hydrogenase iron-sulfur subunit D.
Probab=28.73 E-value=79 Score=27.67 Aligned_cols=33 Identities=12% Similarity=0.045 Sum_probs=16.2
Q ss_pred EEEechhH----HHHHHHHHHHhhCCC---CceEEEeccc
Q 015415 289 ILTYSRMR----YHVMQAAKTLVNKGY---DPEVIDIRSL 321 (407)
Q Consensus 289 Iia~G~~~----~~al~Aa~~L~~~Gi---~v~VI~~~~l 321 (407)
|+++|+.. .....+++.|++... ++++||..+.
T Consensus 2 ViGiGN~l~gDDgvG~~va~~l~~~~~~~~~v~vid~g~~ 41 (150)
T cd06064 2 VVGCGNILFGDDGFGPAVIEELEKLELLPDNVQVIDAGTG 41 (150)
T ss_pred EEEECCcccccCcHHHHHHHHHHhccCCCCCEEEEECCCc
Confidence 45555544 234455555554321 2556665553
No 330
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=28.56 E-value=2e+02 Score=24.22 Aligned_cols=69 Identities=13% Similarity=0.028 Sum_probs=47.7
Q ss_pred EEEEechhHHH-----HHHHHHHHhhCCCCceEEEec-ccccCchhhHHHHHhcCC-cEEEEecCccccchHHHHHH
Q 015415 288 TILTYSRMRYH-----VMQAAKTLVNKGYDPEVIDIR-SLKPFDLYTIGNSIKKTH-RVLIVEECMRTGGIGASLTA 357 (407)
Q Consensus 288 ~Iia~G~~~~~-----al~Aa~~L~~~Gi~v~VI~~~-~l~Pfd~~~l~~~~~~~~-~vvvvEe~~~~GGlGs~I~~ 357 (407)
.++++|..... ..+-.+.|.+.|...=+|... .+..+|.+.+ +.+.+.+ .++.+..+....-+.+.|..
T Consensus 45 lvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i-~~A~~~~lPli~ip~~~~f~~I~~~v~~ 120 (123)
T PF07905_consen 45 LVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLDEIPEEII-ELADELGLPLIEIPWEVPFSDITREVMR 120 (123)
T ss_pred EEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccccCCHHHH-HHHHHcCCCEEEeCCCCCHHHHHHHHHH
Confidence 56677765433 567778898889888888775 8888997765 5566654 68888887765444444443
No 331
>PRK07308 flavodoxin; Validated
Probab=28.43 E-value=2.2e+02 Score=24.34 Aligned_cols=81 Identities=10% Similarity=0.026 Sum_probs=43.7
Q ss_pred echhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccC-CCCC
Q 015415 292 YSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDY-LDAP 370 (407)
Q Consensus 292 ~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~-~~~~ 370 (407)
+|+.-..|...++.|++.|+.+.+.++....+ + .+.+.+.|++.=-.+-.|-+-..+..++....... ...+
T Consensus 12 tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~~~---~----~l~~~d~vi~g~~t~g~G~~p~~~~~fl~~l~~~~l~~k~ 84 (146)
T PRK07308 12 TGNTEEIADIVADKLRELGHDVDVDECTTVDA---S----DFEDADIAIVATYTYGDGELPDEIVDFYEDLADLDLSGKI 84 (146)
T ss_pred CchHHHHHHHHHHHHHhCCCceEEEecccCCH---h----HhccCCEEEEEeCccCCCCCCHHHHHHHHHHhcCCCCCCE
Confidence 34444556666677777899998888765432 1 23445655554433322335445555544321001 1345
Q ss_pred eEEeecCCC
Q 015415 371 IVCLSSQDV 379 (407)
Q Consensus 371 v~~ig~~d~ 379 (407)
+..+|.-|.
T Consensus 85 ~~vfG~Gd~ 93 (146)
T PRK07308 85 YGVVGSGDT 93 (146)
T ss_pred EEEEeeCCC
Confidence 667777664
No 332
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=28.38 E-value=1.2e+02 Score=25.37 Aligned_cols=46 Identities=20% Similarity=0.180 Sum_probs=34.2
Q ss_pred CCcEEEEEechhHHHHH-HHHHHHhhCCCCceEEEecccccCchhhHHH
Q 015415 284 GEHVTILTYSRMRYHVM-QAAKTLVNKGYDPEVIDIRSLKPFDLYTIGN 331 (407)
Q Consensus 284 G~dv~Iia~G~~~~~al-~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~ 331 (407)
..|++++ |+-+...+ +..+.+.+.|+.|.|||+..--++|-+.+.+
T Consensus 48 ~~DvvLl--GPQv~y~~~~~~~~~~~~giPV~vI~~~dYG~mnG~kvL~ 94 (102)
T COG1440 48 NADVVLL--GPQVRYMLKQLKEAAEEKGIPVEVIDMLDYGMMNGEKVLE 94 (102)
T ss_pred cCCEEEE--ChHHHHHHHHHHHHhcccCCCeEEeCHHHccCcCcHHHHH
Confidence 5678887 78887766 4555566779999999988877777666544
No 333
>PRK08114 cystathionine beta-lyase; Provisional
Probab=27.84 E-value=94 Score=32.06 Aligned_cols=36 Identities=14% Similarity=0.277 Sum_probs=23.2
Q ss_pred ceEEEeccc-cc----CchhhHHHHHhcCC--cEEEEecCccc
Q 015415 313 PEVIDIRSL-KP----FDLYTIGNSIKKTH--RVLIVEECMRT 348 (407)
Q Consensus 313 v~VI~~~~l-~P----fd~~~l~~~~~~~~--~vvvvEe~~~~ 348 (407)
..+|-+-++ +| .|.+.|.+.+++.+ .+++||.....
T Consensus 148 TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~ 190 (395)
T PRK08114 148 TKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAA 190 (395)
T ss_pred ceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCcc
Confidence 456555554 34 56777888787763 67777777644
No 334
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=27.63 E-value=4.2e+02 Score=29.21 Aligned_cols=36 Identities=19% Similarity=0.412 Sum_probs=22.3
Q ss_pred HHccCCCcEEEeeCCHHHHHH---HHHHHHh-cCCCEEEee
Q 015415 219 YFQSIPGIQMVACSTPYNAKG---LMKAAIR-SENPVILFE 255 (407)
Q Consensus 219 ~~~~iPgl~V~~P~d~~e~~~---~~~~a~~-~~~Pv~ir~ 255 (407)
.|.++ ||.++-|.|..|... +++.+-+ .++|++|..
T Consensus 241 ~f~a~-G~~~~~~vdGhd~~~l~~al~~ak~~~~~P~~I~~ 280 (641)
T PRK12571 241 LFEEL-GFTYVGPIDGHDMEALLSVLRAARARADGPVLVHV 280 (641)
T ss_pred HHHHc-CCEEECccCCCCHHHHHHHHHHHHhCCCCCEEEEE
Confidence 34444 898886666655554 4444443 467999864
No 335
>PRK11761 cysM cysteine synthase B; Provisional
Probab=27.58 E-value=4.1e+02 Score=25.98 Aligned_cols=73 Identities=11% Similarity=0.066 Sum_probs=46.1
Q ss_pred CCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEeeccccccCCCCCCCccccccCCceEEe-ecCCcEEEEEechhHHHHHH
Q 015415 223 IPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMV-RPGEHVTILTYSRMRYHVMQ 301 (407)
Q Consensus 223 iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir~~r~~y~~~~~v~~~~~~~~~Gk~~vl-~eG~dv~Iia~G~~~~~al~ 301 (407)
.||.+|+.+++.+-...+=..|-...-|++|..+... + ..|.+.+ .-|.++.++..+.....+.+
T Consensus 61 ~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~-------~-------~~k~~~~~~~GA~v~~~~~~~~~~~~~~ 126 (296)
T PRK11761 61 KPGDTLIEATSGNTGIALAMIAAIKGYRMKLIMPENM-------S-------QERRAAMRAYGAELILVPKEQGMEGARD 126 (296)
T ss_pred CCCCEEEEeCCChHHHHHHHHHHHcCCCEEEEECCCC-------C-------HHHHHHHHHcCCEEEEeCCCCChHHHHH
Confidence 3677899999998888877777777788888655321 1 1111222 23666666654334566777
Q ss_pred HHHHHhhC
Q 015415 302 AAKTLVNK 309 (407)
Q Consensus 302 Aa~~L~~~ 309 (407)
.+++|.++
T Consensus 127 ~a~~l~~~ 134 (296)
T PRK11761 127 LALQMQAE 134 (296)
T ss_pred HHHHHHhc
Confidence 77777665
No 336
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=27.33 E-value=1.5e+02 Score=30.79 Aligned_cols=58 Identities=19% Similarity=0.180 Sum_probs=38.5
Q ss_pred CcEEEEEech-hHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHh-cCCcEEEEecC
Q 015415 285 EHVTILTYSR-MRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIK-KTHRVLIVEEC 345 (407)
Q Consensus 285 ~dv~Iia~G~-~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~-~~~~vvvvEe~ 345 (407)
.|+.|+..+. ....|++.++.|+++|+.+++ +... +++. +.+..+-+ +...++++.+.
T Consensus 326 ~~v~v~~~~~~~~~~a~~ia~~LR~~Gi~vei-d~~~-~~l~-k~~k~A~~~~~~~viiiG~~ 385 (430)
T CHL00201 326 IDVYIATQGLKAQKKGWEIIQFLEKQNIKFEL-DLSS-SNFH-KQIKQAGKKRAKACIILGDN 385 (430)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHHHhCCCeEEE-eeCC-CCHH-HHHHHHHHcCCCEEEEEech
Confidence 4678887665 567799999999999999887 4433 3343 33443333 24567777763
No 337
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=27.11 E-value=1.9e+02 Score=25.64 Aligned_cols=63 Identities=16% Similarity=0.190 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHh-hCCCCceEEEecccc-cC---------c--hhhHHHHHhcCCcEEEEecCccccchHHHHHHHH
Q 015415 296 RYHVMQAAKTLV-NKGYDPEVIDIRSLK-PF---------D--LYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAI 359 (407)
Q Consensus 296 ~~~al~Aa~~L~-~~Gi~v~VI~~~~l~-Pf---------d--~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l 359 (407)
...+..+++.+. +.|.+++++|+.-+. |+ + .+.+.+.+...+.||++=.-+ .|++...+..++
T Consensus 16 ~~l~~~~~~~l~~~~g~ev~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y-~~s~~~~LKn~l 91 (174)
T TIGR03566 16 LALVEALVAELAARLGISPRTIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLVVGSPVY-RGSYTGLFKHLF 91 (174)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEEEECCcC-cCcCcHHHHHHH
Confidence 344455555555 458999999987653 12 1 134666777788877776665 477777776665
No 338
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=26.97 E-value=1.4e+02 Score=26.20 Aligned_cols=52 Identities=13% Similarity=0.162 Sum_probs=33.0
Q ss_pred cCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEE
Q 015415 283 PGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIV 342 (407)
Q Consensus 283 eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvv 342 (407)
+|++++|+.-+..+.. ..+..|.++|..+.+.+-++. .+.+.+++.+-|++.
T Consensus 27 ~gk~v~VvGrs~~vG~--pla~lL~~~gatV~~~~~~t~------~l~~~v~~ADIVvsA 78 (140)
T cd05212 27 DGKKVLVVGRSGIVGA--PLQCLLQRDGATVYSCDWKTI------QLQSKVHDADVVVVG 78 (140)
T ss_pred CCCEEEEECCCchHHH--HHHHHHHHCCCEEEEeCCCCc------CHHHHHhhCCEEEEe
Confidence 4677888765555544 455667778888887775552 355667777644443
No 339
>PRK08105 flavodoxin; Provisional
Probab=26.83 E-value=63 Score=28.38 Aligned_cols=84 Identities=13% Similarity=0.125 Sum_probs=44.8
Q ss_pred EEEechhHHHHHHHHH----HHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCccccchHH---HHHHHHHh
Q 015415 289 ILTYSRMRYHVMQAAK----TLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGA---SLTAAITE 361 (407)
Q Consensus 289 Iia~G~~~~~al~Aa~----~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs---~I~~~l~e 361 (407)
.|-||+....+.+.|+ .|++.|+++.|+++..+.++. ..+.+.++++=..+-.|-+-. .+...+.+
T Consensus 5 ~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~~~~~~~-------~~~~~~vi~~~sT~G~Ge~p~~~~~f~~~l~~ 77 (149)
T PRK08105 5 GIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDPELSDWQ-------PYQDELVLVVTSTTGQGDLPDSIVPLFQALKD 77 (149)
T ss_pred EEEEEcCchHHHHHHHHHHHHHHhCCCceEEechhhCCchh-------cccCCeEEEEECCCCCCCCChhHHHHHHHHHh
Confidence 4457777766665554 455569999998876543321 122356666666554444422 33334443
Q ss_pred ccccCCCCCeEEeecCCC
Q 015415 362 NFHDYLDAPIVCLSSQDV 379 (407)
Q Consensus 362 ~~~~~~~~~v~~ig~~d~ 379 (407)
..-.....++..+|+-|.
T Consensus 78 ~~~~l~~~~~avfGlGds 95 (149)
T PRK08105 78 TAGYQPNLRYGVIALGDS 95 (149)
T ss_pred cCcccCCCEEEEEeeecC
Confidence 210111245667777664
No 340
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=26.81 E-value=1.2e+02 Score=26.44 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=33.1
Q ss_pred EEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCC--cEEEEec
Q 015415 288 TILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTH--RVLIVEE 344 (407)
Q Consensus 288 ~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~--~vvvvEe 344 (407)
+|++=|..-....++++.|++.|+.+-+|-+.. .+.+.|.+...+.. +++.+.|
T Consensus 108 illTDG~~~~~~~~~a~~lk~~gi~i~~ig~g~---~~~~~L~~ia~~~~~~~~~~~~d 163 (164)
T cd01482 108 ILITDGKSQDDVELPARVLRNLGVNVFAVGVKD---ADESELKMIASKPSETHVFNVAD 163 (164)
T ss_pred EEEcCCCCCchHHHHHHHHHHCCCEEEEEecCc---CCHHHHHHHhCCCchheEEEcCC
Confidence 444444333345678889998888766665533 45777777766542 4555543
No 341
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=26.74 E-value=44 Score=27.94 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=25.4
Q ss_pred cCCcEEEEEechhH-HHHHHHHHHHhhCCCCceEEEe
Q 015415 283 PGEHVTILTYSRMR-YHVMQAAKTLVNKGYDPEVIDI 318 (407)
Q Consensus 283 eG~dv~Iia~G~~~-~~al~Aa~~L~~~Gi~v~VI~~ 318 (407)
...|++||++|... ..-.+..+.|+++||.+++.|-
T Consensus 51 ~~peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T 87 (109)
T cd05560 51 LQPEVILLGTGERQRFPPPALLAPLLARGIGVEVMDT 87 (109)
T ss_pred cCCCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECH
Confidence 34689999999643 2234455678889999888763
No 342
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=26.61 E-value=6.3e+02 Score=27.97 Aligned_cols=107 Identities=17% Similarity=0.278 Sum_probs=59.8
Q ss_pred EeccchhHHHHHHHHHHHhc----CC--eeEEEecchhHHH--HHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCC--
Q 015415 137 LDTPIAENSFTGMGIGAAMT----GL--RPIVEGMNMGFLL--LAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVG-- 205 (407)
Q Consensus 137 i~~GIaE~~~vg~A~GlA~~----G~--rp~~~t~~~~f~~--ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~-- 205 (407)
+.+| +=.+.+++|.|||++ |. ++|+- +.-.-++ -+||.+. .+++. +-+++++. .++.+
T Consensus 174 ~~tG-slg~glS~a~GmA~a~~l~g~~~~v~~v-iGDGel~eG~~wEAl~-~a~~~--------~~nlivIlddN~~~~~ 242 (641)
T PLN02234 174 FGTG-HSSTTLSAGLGMAVGRDLKGMNNSVVSV-IGDGAMTAGQAYEAMN-NAGYL--------HSNMIVILNDNKQVSL 242 (641)
T ss_pred ECCC-chHHHHHHHHHHHHHHHhCCCCCeEEEE-EccchhhhHHHHHHHH-HHhhh--------CCCEEEEEECCCCCcc
Confidence 5566 445666777777765 43 45554 3433333 6788774 46643 45666665 45542
Q ss_pred ---CCCCcCcc-ch------------------HHHHHccCCCcEEEeeCCHHHHHHHH---HHHHhc--CCCEEEee
Q 015415 206 ---RQLGAEHS-QR------------------LESYFQSIPGIQMVACSTPYNAKGLM---KAAIRS--ENPVILFE 255 (407)
Q Consensus 206 ---~~~G~tHs-q~------------------~ea~~~~iPgl~V~~P~d~~e~~~~~---~~a~~~--~~Pv~ir~ 255 (407)
..+|++.. .. ....|..+ ||.++-|.|..|..+++ +.+-.. .+|++|..
T Consensus 243 ~~~q~~g~~~~v~~l~~~l~~l~~~~~~~~~~~~~~fe~f-G~~~~g~vDGHd~~~l~~al~~~k~~~~~~P~vI~~ 318 (641)
T PLN02234 243 PTANLDGPTQPVGALSCALSRLQSNCGMIRETSSTLFEEL-GFHYVGPVDGHNIDDLVSILETLKSTKTIGPVLIHV 318 (641)
T ss_pred cccccCCCCCCcccHHHHHHHhhcccccccCCHHHHHHHc-CCEEEeeECCCCHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 23444431 11 12455666 89888676766655544 443222 47999863
No 343
>cd06067 H2MP_MemB-H2evol Endopeptidases belonging to membrane-bound hydrogen evolving hydrogenase group. In hydrogenase 3 from E coli, the maturation of the large subunit (HycE) requires the cleavage of a C-terminal peptide by the endopeptidase HycI, before the final formation of the [NiFe] metallocenter. HycI protease is a monomer and lacks characteristic signature motifs of serine, zinc, cysteine, or acid proteases and thus its cleavage reaction is not inhibited by conventional inhibitors of serine and metalloproteases. Such hydrogenases as those from Methanosarcina barkeri (EchCE) and Rhodospirillum rubrum (CooLH) also belong to this group of membrane-bound hydrogen evolving hydrogenase. Sequence comparison of the large subunits from related hydrogenase indicates that in contrast to EchE (358 amino acids) and CooH (361 amino acids), the large subunit HycE (569 amino acids) contains an extra carboxy-terminal stretch of 32 amino acids that is cleaved during the maturation process. In
Probab=26.41 E-value=1.7e+02 Score=25.10 Aligned_cols=52 Identities=21% Similarity=0.148 Sum_probs=28.4
Q ss_pred EEEechhH----HHHHHHHHHHhhC-CCCceEEEecccccCchhhHHHHHh--cCCcEEEEec
Q 015415 289 ILTYSRMR----YHVMQAAKTLVNK-GYDPEVIDIRSLKPFDLYTIGNSIK--KTHRVLIVEE 344 (407)
Q Consensus 289 Iia~G~~~----~~al~Aa~~L~~~-Gi~v~VI~~~~l~Pfd~~~l~~~~~--~~~~vvvvEe 344 (407)
|+++|+.. .....++++|++. .-+++++|..+ -|++. + ..+. +++++++||-
T Consensus 2 VlGiGN~L~~DDgvG~~v~~~L~~~~~~~v~vid~gt-~~~~~--~-~~l~~~~~d~vIiVDA 60 (136)
T cd06067 2 LLGVGNELRGDDGAGPLLAEKLEDLPNPNWLVIDGGT-VPENF--T-GKIREEKPDLIVIVDA 60 (136)
T ss_pred EEEeCccccccCcHHHHHHHHHHhcCCCCEEEEECCC-CHHHH--H-HHHHhcCCCEEEEEEC
Confidence 56666654 2345666666554 23477787766 23331 2 2232 4667777765
No 344
>PRK09739 hypothetical protein; Provisional
Probab=26.14 E-value=1.8e+02 Score=26.44 Aligned_cols=64 Identities=13% Similarity=0.066 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhCCCCceEEEecccc--c------------------CchhhHHHHHhcCCcEEEEecCccccchHHHH
Q 015415 296 RYHVMQAAKTLVNKGYDPEVIDIRSLK--P------------------FDLYTIGNSIKKTHRVLIVEECMRTGGIGASL 355 (407)
Q Consensus 296 ~~~al~Aa~~L~~~Gi~v~VI~~~~l~--P------------------fd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I 355 (407)
...+...++.|++.|.+++++|+.-.. | -|.+.+.+.++.++.||+.=.-+ .+++-+.+
T Consensus 20 ~~l~~~~~~~~~~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~y-~~~~Pa~L 98 (199)
T PRK09739 20 AKVAEAIHQRAQERGHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEHDALVFVFPLW-WYSFPAML 98 (199)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhCCEEEEECchh-hhcchHHH
Confidence 445566667888889999999987542 1 11244556677888887776655 47777777
Q ss_pred HHHHH
Q 015415 356 TAAIT 360 (407)
Q Consensus 356 ~~~l~ 360 (407)
..++-
T Consensus 99 K~~iD 103 (199)
T PRK09739 99 KGYID 103 (199)
T ss_pred HHHHH
Confidence 76653
No 345
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=25.97 E-value=2.1e+02 Score=23.11 Aligned_cols=56 Identities=18% Similarity=0.196 Sum_probs=34.9
Q ss_pred EEEEEechhHHHHHHHHHHH----hhCCCCceEEEecc---cccCchhhHHHHHhcCCcEEEEecCc
Q 015415 287 VTILTYSRMRYHVMQAAKTL----VNKGYDPEVIDIRS---LKPFDLYTIGNSIKKTHRVLIVEECM 346 (407)
Q Consensus 287 v~Iia~G~~~~~al~Aa~~L----~~~Gi~v~VI~~~~---l~Pfd~~~l~~~~~~~~~vvvvEe~~ 346 (407)
+.|+++|.......-|++.| ++.|+++.|---.. .++++.+.+ ...+.|+++-+..
T Consensus 2 ~~i~ac~~G~a~s~laa~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i----~~Ad~vi~~~~~~ 64 (96)
T cd05569 2 VAVTACPTGIAHTYMAAEALEKAAKKLGWEIKVETQGSLGIENELTAEDI----AEADAVILAADVP 64 (96)
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecCcCccCcCCHHHH----hhCCEEEEecCCC
Confidence 46778887665555555544 44598877664444 566766544 4467777776654
No 346
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=25.77 E-value=1.5e+02 Score=28.15 Aligned_cols=98 Identities=21% Similarity=0.335 Sum_probs=58.6
Q ss_pred HHHccCCCcEEEe-eCCHHHHHHHHHHHHhcCCCEEEeeccccccCCCCCCCcccccc-CCceEEeecCCcEEEEEechh
Q 015415 218 SYFQSIPGIQMVA-CSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICN-LEEAEMVRPGEHVTILTYSRM 295 (407)
Q Consensus 218 a~~~~iPgl~V~~-P~d~~e~~~~~~~a~~~~~Pv~ir~~r~~y~~~~~v~~~~~~~~-~Gk~~vl~eG~dv~Iia~G~~ 295 (407)
.++..+||+.++- ..+-+|++.++. .-.|=.|+++.-+ |+.+- +. +..++--+...|+.+|+.-+-
T Consensus 18 ~yv~~~~gF~~vg~A~~~~ea~~~i~----~~~pDLILLDiYm-------Pd~~G-i~lL~~ir~~~~~~DVI~iTAA~d 85 (224)
T COG4565 18 RYVKQIPGFSVVGTAGTLEEAKMIIE----EFKPDLILLDIYM-------PDGNG-IELLPELRSQHYPVDVIVITAASD 85 (224)
T ss_pred HHHHhCCCceEEEeeccHHHHHHHHH----hhCCCEEEEeecc-------CCCcc-HHHHHHHHhcCCCCCEEEEeccch
Confidence 5888999987665 556667776654 2234444433221 11110 00 111111123568999998777
Q ss_pred HHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcC
Q 015415 296 RYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKT 336 (407)
Q Consensus 296 ~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~ 336 (407)
.....+|. ..+|+| .-||||..+-+.+.+.++
T Consensus 86 ~~tI~~al--------r~Gv~D-YLiKPf~~eRl~~aL~~y 117 (224)
T COG4565 86 METIKEAL--------RYGVVD-YLIKPFTFERLQQALTRY 117 (224)
T ss_pred HHHHHHHH--------hcCchh-heecceeHHHHHHHHHHH
Confidence 77766653 367887 358999999888877765
No 347
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=25.63 E-value=5.5e+02 Score=23.90 Aligned_cols=73 Identities=15% Similarity=0.192 Sum_probs=37.5
Q ss_pred cccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCHHHHHHHc------CCC
Q 015415 321 LKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWT------VVQ 394 (407)
Q Consensus 321 l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~------gl~ 394 (407)
+-+++.+.+.+.+.+.+-++ .-.. ..|++..+.+++.- +.|+.. .+ . ....+.+.+.. --+
T Consensus 264 ~g~~~~~~~~~~~~~ad~~i-~~~~--~~~~~~~~~Ea~~~------G~pvI~--~~-~-~~~~~~~~~~~~g~~~~~~~ 330 (377)
T cd03798 264 LGAVPHEEVPAYYAAADVFV-LPSL--REGFGLVLLEAMAC------GLPVVA--TD-V-GGIPEIITDGENGLLVPPGD 330 (377)
T ss_pred eCCCCHHHHHHHHHhcCeee-cchh--hccCChHHHHHHhc------CCCEEE--ec-C-CChHHHhcCCcceeEECCCC
Confidence 34556667777777766433 2222 25667777777652 445532 21 1 11112222111 127
Q ss_pred HHHHHHHHHHHh
Q 015415 395 PAQIVTAVEQLC 406 (407)
Q Consensus 395 ~~~I~~~i~~ll 406 (407)
++++++++.+++
T Consensus 331 ~~~l~~~i~~~~ 342 (377)
T cd03798 331 PEALAEAILRLL 342 (377)
T ss_pred HHHHHHHHHHHh
Confidence 788888887765
No 348
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=25.38 E-value=3.9e+02 Score=24.25 Aligned_cols=114 Identities=10% Similarity=-0.022 Sum_probs=55.0
Q ss_pred CCcEEEEEechhHHHHHHHHHHHhhCC--CCceEEEe-ccccc-CchhhHHHHHhcC---CcEEEEecCcc-ccchHHHH
Q 015415 284 GEHVTILTYSRMRYHVMQAAKTLVNKG--YDPEVIDI-RSLKP-FDLYTIGNSIKKT---HRVLIVEECMR-TGGIGASL 355 (407)
Q Consensus 284 G~dv~Iia~G~~~~~al~Aa~~L~~~G--i~v~VI~~-~~l~P-fd~~~l~~~~~~~---~~vvvvEe~~~-~GGlGs~I 355 (407)
...+++||.|..+...+-.++.+.+++ .++.++-. ++-.- +-.+.+.+...+. +..+++++... .-|.-..+
T Consensus 98 ~~~~lliagG~GI~p~~sll~~~~~~~~~~~v~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 177 (224)
T cd06187 98 DRPVLCIAGGTGLAPLRAIVEDALRRGEPRPVHLFFGARTERDLYDLEGLLALAARHPWLRVVPVVSHEEGAWTGRRGLV 177 (224)
T ss_pred CCCEEEEecCcCHHHHHHHHHHHHhcCCCCCEEEEEecCChhhhcChHHHHHHHHhCCCeEEEEEeCCCCCccCCCcccH
Confidence 457899999998888888888776654 34444432 22111 1123444433332 22344544211 00111122
Q ss_pred HHHHHhccccCCCCCeEEeecCCCCCCCHHHHHHHcCCCHHHH
Q 015415 356 TAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQI 398 (407)
Q Consensus 356 ~~~l~e~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~gl~~~~I 398 (407)
.+.+.+... ........++.+..+........+..|++.++|
T Consensus 178 ~~~~~~~~~-~~~~~~v~vcGp~~~~~~v~~~l~~~G~~~~~i 219 (224)
T cd06187 178 TDVVGRDGP-DWADHDIYICGPPAMVDATVDALLARGAPPERI 219 (224)
T ss_pred HHHHHHhcc-ccccCEEEEECCHHHHHHHHHHHHHcCCCHHHe
Confidence 333322110 012234566766555444333344578887776
No 349
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=25.28 E-value=7.2e+02 Score=25.25 Aligned_cols=72 Identities=21% Similarity=0.237 Sum_probs=40.7
Q ss_pred CcEEEEEechhHH----HHHHHHHHHh--hCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHH
Q 015415 285 EHVTILTYSRMRY----HVMQAAKTLV--NKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAA 358 (407)
Q Consensus 285 ~dv~Iia~G~~~~----~al~Aa~~L~--~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~ 358 (407)
+++ +|.|++|.. .|...++.++ +.|+++.++++... |.+.+.+.+.+++.+++-=..+ .+|.-..+..+
T Consensus 248 ~kv-~IvY~S~~GnTe~mA~~ia~g~~~~~~g~~v~~~~~~~~---~~~~i~~~~~~~d~ii~GspT~-~~~~~~~~~~~ 322 (394)
T PRK11921 248 NQV-TILYDTMWNSTRRMAEAIAEGIKKANKDVTVKLYNSAKS---DKNDIITEVFKSKAILVGSSTI-NRGILSSTAAI 322 (394)
T ss_pred CcE-EEEEECCchHHHHHHHHHHHHHhhcCCCCeEEEEECCCC---CHHHHHHHHHhCCEEEEECCCc-CccccHHHHHH
Confidence 445 445555554 4455555665 55788888887654 4455555555677666654443 35544555555
Q ss_pred HHh
Q 015415 359 ITE 361 (407)
Q Consensus 359 l~e 361 (407)
+.+
T Consensus 323 l~~ 325 (394)
T PRK11921 323 LEE 325 (394)
T ss_pred HHH
Confidence 433
No 350
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=25.27 E-value=2.3e+02 Score=28.77 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=18.2
Q ss_pred CcEEEEecCccccchHHHHHHHHHhcc
Q 015415 337 HRVLIVEECMRTGGIGASLTAAITENF 363 (407)
Q Consensus 337 ~~vvvvEe~~~~GGlGs~I~~~l~e~~ 363 (407)
.+|+++ + .||+|+.++..|...+
T Consensus 136 ~~Vlvv--G--~GG~Gs~ia~~La~~G 158 (376)
T PRK08762 136 ARVLLI--G--AGGLGSPAALYLAAAG 158 (376)
T ss_pred CcEEEE--C--CCHHHHHHHHHHHHcC
Confidence 457777 3 4999999999998765
No 351
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=24.79 E-value=2.1e+02 Score=24.52 Aligned_cols=76 Identities=12% Similarity=0.104 Sum_probs=42.8
Q ss_pred cEEEEEechhHHHHHHHHH----HHhhC-CCCceEEEecccccCchhhHHHHHh-cCCcEEEEecCccccc-hHHHHHHH
Q 015415 286 HVTILTYSRMRYHVMQAAK----TLVNK-GYDPEVIDIRSLKPFDLYTIGNSIK-KTHRVLIVEECMRTGG-IGASLTAA 358 (407)
Q Consensus 286 dv~Iia~G~~~~~al~Aa~----~L~~~-Gi~v~VI~~~~l~Pfd~~~l~~~~~-~~~~vvvvEe~~~~GG-lGs~I~~~ 358 (407)
-++|++.|+--..+.+..+ .|+++ ++.+.+=-+-.-.|--.+.+.+..+ ..++|+|+-=-...|+ +-..|-+.
T Consensus 2 ~lllvgHGSR~~~~~~~~~~la~~l~~~~~~~v~~afle~~~P~l~~~l~~l~~~G~~~ivVvPlFL~~G~Hv~~DiP~~ 81 (125)
T cd03415 2 AIIIITHGSRRNTFNEDMEEWAAYLERKLGVPVYLTYNEYAEPNWRDLLNELLSEGYGHIIIALAFLGRGNHVARDIMGE 81 (125)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHhccCCceEEEEeecCCCCHHHHHHHHHHCCCCEEEEehhhccCCcchHHHHHHH
Confidence 3789999987766655444 44332 4444433333345766677777655 3577888833222222 34456666
Q ss_pred HHh
Q 015415 359 ITE 361 (407)
Q Consensus 359 l~e 361 (407)
+.+
T Consensus 82 l~~ 84 (125)
T cd03415 82 LGV 84 (125)
T ss_pred HHh
Confidence 554
No 352
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=24.68 E-value=1.3e+02 Score=26.13 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=32.9
Q ss_pred EEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcC--CcEEEEec
Q 015415 287 VTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKT--HRVLIVEE 344 (407)
Q Consensus 287 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~--~~vvvvEe 344 (407)
+++++-|.......+++..|++.|+.+-.|-+.. -|.+.|++..... ++++.+++
T Consensus 107 iiliTDG~~~~~~~~~~~~l~~~gv~i~~ig~g~---~~~~~L~~ia~~~~~~~~~~~~~ 163 (164)
T cd01472 107 LVVITDGKSQDDVEEPAVELKQAGIEVFAVGVKN---ADEEELKQIASDPKELYVFNVAD 163 (164)
T ss_pred EEEEcCCCCCchHHHHHHHHHHCCCEEEEEECCc---CCHHHHHHHHCCCchheEEeccC
Confidence 3444445433334455667877887766665443 3888888777665 45666654
No 353
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=24.63 E-value=1.2e+02 Score=31.19 Aligned_cols=74 Identities=20% Similarity=0.253 Sum_probs=48.7
Q ss_pred EEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCC-cEEEEecCccccch--HHHHHHHHHhc
Q 015415 289 ILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTH-RVLIVEECMRTGGI--GASLTAAITEN 362 (407)
Q Consensus 289 Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~-~vvvvEe~~~~GGl--Gs~I~~~l~e~ 362 (407)
||++-..=+.+++.++.|+.+|.+|+.+.+..==-.|.+.|++.++... -|-+.--++.+|-+ =.+|++.+.+.
T Consensus 94 IIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~ 170 (386)
T COG1104 94 IITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKER 170 (386)
T ss_pred EEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHc
Confidence 4444455566788888897789999998877655577888888887543 33344445555543 33566666654
No 354
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=24.55 E-value=3.8e+02 Score=26.56 Aligned_cols=64 Identities=20% Similarity=0.276 Sum_probs=38.2
Q ss_pred HHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecC-ccccc----hHHHHHHHHHhccccCCCCCeEEe
Q 015415 300 MQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEEC-MRTGG----IGASLTAAITENFHDYLDAPIVCL 374 (407)
Q Consensus 300 l~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~-~~~GG----lGs~I~~~l~e~~~~~~~~~v~~i 374 (407)
...++.|.+.||++.+|--. .+...+++.+.|++==|. ..+|| .|+...+.+... ...|+..+
T Consensus 161 ~~~a~~L~~~GI~vtlI~Ds--------av~~~m~~vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak~----~~vPv~V~ 228 (310)
T PRK08535 161 HITAKELAEYGIPVTLIVDS--------AVRYFMKDVDKVVVGADAITANGAVINKIGTSQIALAAHE----ARVPFMVA 228 (310)
T ss_pred HHHHHHHHHCCCCEEEEehh--------HHHHHHHhCCEEEECccEEecCCCEEeHHhHHHHHHHHHH----hCCCEEEe
Confidence 44567788899999998533 334445666766652222 23444 577777776654 25666554
Q ss_pred e
Q 015415 375 S 375 (407)
Q Consensus 375 g 375 (407)
+
T Consensus 229 a 229 (310)
T PRK08535 229 A 229 (310)
T ss_pred c
Confidence 4
No 355
>PRK05568 flavodoxin; Provisional
Probab=24.55 E-value=1.5e+02 Score=25.13 Aligned_cols=47 Identities=11% Similarity=0.099 Sum_probs=27.7
Q ss_pred chhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCc
Q 015415 293 SRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECM 346 (407)
Q Consensus 293 G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~ 346 (407)
|+.-..|...++.+++.|++++++++....+. .+.+++.|++.=..+
T Consensus 13 GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~~~-------~~~~~d~iilgsp~y 59 (142)
T PRK05568 13 GNTEAMANLIAEGAKENGAEVKLLNVSEASVD-------DVKGADVVALGSPAM 59 (142)
T ss_pred chHHHHHHHHHHHHHHCCCeEEEEECCCCCHH-------HHHhCCEEEEECCcc
Confidence 44445555555666677999999988765321 234455555544433
No 356
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=24.47 E-value=1.7e+02 Score=21.73 Aligned_cols=39 Identities=18% Similarity=0.338 Sum_probs=23.5
Q ss_pred HHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCcc
Q 015415 300 MQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMR 347 (407)
Q Consensus 300 l~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~ 347 (407)
....+.|++.|++++.++ +|++ .+.. +...+|+++....
T Consensus 8 ~a~~~~L~~~g~~v~~~~----~~~~--~l~~---~~~tll~i~~~~~ 46 (70)
T PF14258_consen 8 YALYQLLEEQGVKVERWR----KPYE--ALEA---DDGTLLVIGPDLR 46 (70)
T ss_pred HHHHHHHHHCCCeeEEec----ccHH--HhCC---CCCEEEEEeCCCC
Confidence 345567888888876654 3543 3321 3456788887743
No 357
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=24.20 E-value=1.6e+02 Score=28.85 Aligned_cols=55 Identities=25% Similarity=0.333 Sum_probs=34.8
Q ss_pred cCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecc----------cccCchhhHHHHHhcCCcEE
Q 015415 283 PGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRS----------LKPFDLYTIGNSIKKTHRVL 340 (407)
Q Consensus 283 eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~----------l~Pfd~~~l~~~~~~~~~vv 340 (407)
.|+.+.|+++|.+-.. +++.|+..|.++.+++-.. ..+++.+.+.+.+++.+-|+
T Consensus 150 ~gk~v~IiG~G~iG~a---vA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVi 214 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMT---IARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVI 214 (287)
T ss_pred CCCEEEEEcChHHHHH---HHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEE
Confidence 3678999999986544 4555667788888777532 22344445556666666443
No 358
>PRK12483 threonine dehydratase; Reviewed
Probab=24.18 E-value=4.8e+02 Score=28.03 Aligned_cols=120 Identities=18% Similarity=0.225 Sum_probs=57.9
Q ss_pred EEeeCCHHHHHHHHHHHHhcCCCEEEeeccccccCCCCCCCccccccCCceEEe-ecCCcEEEEEechhHHHHHHHHHHH
Q 015415 228 MVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMV-RPGEHVTILTYSRMRYHVMQAAKTL 306 (407)
Q Consensus 228 V~~P~d~~e~~~~~~~a~~~~~Pv~ir~~r~~y~~~~~v~~~~~~~~~Gk~~vl-~eG~dv~Iia~G~~~~~al~Aa~~L 306 (407)
|++++..+-+.++=..|-...-|+.|.++..- + .-|...+ .-|+++.+ +|.....+.+.+.++
T Consensus 88 VV~aSaGNha~gvA~aA~~lGi~~~IvmP~~t-------p-------~~Kv~~~r~~GAeVil--~g~~~d~a~~~A~~l 151 (521)
T PRK12483 88 VITASAGNHAQGVALAAARLGVKAVIVMPRTT-------P-------QLKVDGVRAHGGEVVL--HGESFPDALAHALKL 151 (521)
T ss_pred EEEECCCHHHHHHHHHHHHhCCCEEEEECCCC-------C-------HHHHHHHHHCCCEEEE--ECCCHHHHHHHHHHH
Confidence 45555555555555555555556666433210 0 0010111 12455544 366677777777666
Q ss_pred hhC-CCCceEEEecccccCchhhH--------HHHHhcCC---cEEEEecCccccchHHHHHHHHHhccccCCCCCeEEe
Q 015415 307 VNK-GYDPEVIDIRSLKPFDLYTI--------GNSIKKTH---RVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCL 374 (407)
Q Consensus 307 ~~~-Gi~v~VI~~~~l~Pfd~~~l--------~~~~~~~~---~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~i 374 (407)
.++ | ..++.|||...+ .+.++..+ ..|++-=+. ||+-+-|+.++.+. .+.+..+
T Consensus 152 a~e~g-------~~~v~pfdd~~viaGqgTig~EI~eQ~~~~~D~VvvpvGg--GGliaGia~~~K~~-----~p~vkVI 217 (521)
T PRK12483 152 AEEEG-------LTFVPPFDDPDVIAGQGTVAMEILRQHPGPLDAIFVPVGG--GGLIAGIAAYVKYV-----RPEIKVI 217 (521)
T ss_pred HHhcC-------CeeeCCCCChHHHHHHHHHHHHHHHHhCCCCCEEEEecCc--cHHHHHHHHHHHHh-----CCCCEEE
Confidence 543 3 235577764321 12233221 234444342 67766777666542 2345556
Q ss_pred ecC
Q 015415 375 SSQ 377 (407)
Q Consensus 375 g~~ 377 (407)
|++
T Consensus 218 GVe 220 (521)
T PRK12483 218 GVE 220 (521)
T ss_pred EEE
Confidence 654
No 359
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=24.11 E-value=2.5e+02 Score=22.34 Aligned_cols=74 Identities=15% Similarity=0.170 Sum_probs=41.2
Q ss_pred EEEEEechhHHHHHHH----HHHHhhCC--CCceEEEecccccCchhhHHHHHhc-CCcEEEEecCccccchH-HHHHHH
Q 015415 287 VTILTYSRMRYHVMQA----AKTLVNKG--YDPEVIDIRSLKPFDLYTIGNSIKK-THRVLIVEECMRTGGIG-ASLTAA 358 (407)
Q Consensus 287 v~Iia~G~~~~~al~A----a~~L~~~G--i~v~VI~~~~l~Pfd~~~l~~~~~~-~~~vvvvEe~~~~GGlG-s~I~~~ 358 (407)
++|++.|+....+.+. ++.|++.. ..+.+--+..-.|--++.+.+..+. .++|+++-=....|.-. ..|.+.
T Consensus 2 ivlv~hGS~~~~~~~~~~~l~~~l~~~~~~~~v~~afle~~~p~~~~~l~~l~~~g~~~v~vvPlfl~~G~h~~~dip~~ 81 (101)
T cd03416 2 LLLVGHGSRDPRAAEALEALAERLRERLPGDEVELAFLELAEPSLAEALDELAAQGATRIVVVPLFLLAGGHVKEDIPAA 81 (101)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEeeEeCCCccccccHHHH
Confidence 6788999876544444 34444432 3333332333356666777665553 57888887666555533 345544
Q ss_pred HH
Q 015415 359 IT 360 (407)
Q Consensus 359 l~ 360 (407)
+.
T Consensus 82 ~~ 83 (101)
T cd03416 82 LA 83 (101)
T ss_pred HH
Confidence 43
No 360
>PHA03050 glutaredoxin; Provisional
Probab=24.00 E-value=3.9e+02 Score=22.08 Aligned_cols=68 Identities=21% Similarity=0.285 Sum_probs=40.7
Q ss_pred CCcEEEEEechhHHHHHHHHHHHhhCCC---CceEEEecccccCchhhHHHHHhc-----CCcEEEEecCccccchHHHH
Q 015415 284 GEHVTILTYSRMRYHVMQAAKTLVNKGY---DPEVIDIRSLKPFDLYTIGNSIKK-----THRVLIVEECMRTGGIGASL 355 (407)
Q Consensus 284 G~dv~Iia~G~~~~~al~Aa~~L~~~Gi---~v~VI~~~~l~Pfd~~~l~~~~~~-----~~~vvvvEe~~~~GGlGs~I 355 (407)
..+++|++.. ....|..|.+.|++.|+ +.+++|+.-..+ +. .+++.+.+ +=..|++.+.. .||.....
T Consensus 12 ~~~V~vys~~-~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~-~~-~~~~~l~~~tG~~tVP~IfI~g~~-iGG~ddl~ 87 (108)
T PHA03050 12 NNKVTIFVKF-TCPFCRNALDILNKFSFKRGAYEIVDIKEFKP-EN-ELRDYFEQITGGRTVPRIFFGKTS-IGGYSDLL 87 (108)
T ss_pred cCCEEEEECC-CChHHHHHHHHHHHcCCCcCCcEEEECCCCCC-CH-HHHHHHHHHcCCCCcCEEEECCEE-EeChHHHH
Confidence 3567777764 46778888888988888 788999874321 22 22222222 22345565544 58875443
No 361
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=23.98 E-value=2.3e+02 Score=25.52 Aligned_cols=61 Identities=18% Similarity=0.285 Sum_probs=36.8
Q ss_pred chhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhc
Q 015415 293 SRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITEN 362 (407)
Q Consensus 293 G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~ 362 (407)
|+.-..|...++.|+. |+++.++++....+. .+.+++.|++.= ..-.|.+...+..++.++
T Consensus 12 G~T~~iA~~Ia~~l~~-g~~v~~~~~~~~~~~-------~l~~yD~vIlGs-pi~~G~~~~~~~~fl~~~ 72 (177)
T PRK11104 12 GQTRKIASYIASELKE-GIQCDVVNLHRIEEP-------DLSDYDRVVIGA-SIRYGHFHSALYKFVKKH 72 (177)
T ss_pred ChHHHHHHHHHHHhCC-CCeEEEEEhhhcCcc-------CHHHCCEEEEEC-ccccCCcCHHHHHHHHHH
Confidence 4555556666777776 888888886654321 244566655433 333577777777776553
No 362
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=23.93 E-value=5e+02 Score=23.81 Aligned_cols=88 Identities=16% Similarity=0.247 Sum_probs=56.3
Q ss_pred CCcEEEEEechhHHH-HHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCC-----cEEEEecCccccc-hHHHHH
Q 015415 284 GEHVTILTYSRMRYH-VMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTH-----RVLIVEECMRTGG-IGASLT 356 (407)
Q Consensus 284 G~dv~Iia~G~~~~~-al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~-----~vvvvEe~~~~GG-lGs~I~ 356 (407)
|+.++|++-|..+.+ |+-|..+....+|.-+=|++.++--.-++.|.+.++... .++++--+. .|| +.+++.
T Consensus 83 GKRvIiiGGGAqVsqVA~GAIsEADRHNiRGERISvDTiPlVGEE~laEAVkAV~rLpRv~iLVLAGsl-MGGkIteaVk 161 (218)
T COG1707 83 GKRVIIIGGGAQVSQVARGAISEADRHNIRGERISVDTIPLVGEEELAEAVKAVARLPRVGILVLAGSL-MGGKITEAVK 161 (218)
T ss_pred CcEEEEECCchhHHHHHHhhcchhhhcccccceeeeecccccChHHHHHHHHHHhccccceeEEEeccc-ccchHHHHHH
Confidence 678889988877754 566666666668888889999986667888888877542 245555443 344 333333
Q ss_pred HHHHhccccCCCCCeEEeecC
Q 015415 357 AAITENFHDYLDAPIVCLSSQ 377 (407)
Q Consensus 357 ~~l~e~~~~~~~~~v~~ig~~ 377 (407)
+. .+. .+.|+..+...
T Consensus 162 ~l-r~~----hgI~VISL~M~ 177 (218)
T COG1707 162 EL-REE----HGIPVISLNMF 177 (218)
T ss_pred HH-HHh----cCCeEEEeccC
Confidence 32 222 25677777654
No 363
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=23.83 E-value=1.5e+02 Score=25.41 Aligned_cols=42 Identities=17% Similarity=0.071 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcC
Q 015415 294 RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKT 336 (407)
Q Consensus 294 ~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~ 336 (407)
+....|.+|.+.|++.||..+.+|+.. .|.+.+.|.+.++.+
T Consensus 8 ~~C~~C~ka~~~L~~~gi~~~~idi~~-~~~~~~eL~~~l~~~ 49 (131)
T PRK01655 8 PSCTSCRKAKAWLEEHDIPFTERNIFS-SPLTIDEIKQILRMT 49 (131)
T ss_pred CCChHHHHHHHHHHHcCCCcEEeeccC-ChhhHHHHHHHHHHh
Confidence 566788999999999999999999854 688888887777765
No 364
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=23.70 E-value=5.2e+02 Score=23.69 Aligned_cols=114 Identities=18% Similarity=0.133 Sum_probs=54.3
Q ss_pred CCcEEEEEechhHHHHHHHHHHHhhCCC--CceEEE-eccccc-CchhhHHHHHhcCCc---EEEEecCc----cccchH
Q 015415 284 GEHVTILTYSRMRYHVMQAAKTLVNKGY--DPEVID-IRSLKP-FDLYTIGNSIKKTHR---VLIVEECM----RTGGIG 352 (407)
Q Consensus 284 G~dv~Iia~G~~~~~al~Aa~~L~~~Gi--~v~VI~-~~~l~P-fd~~~l~~~~~~~~~---vvvvEe~~----~~GGlG 352 (407)
..++++|+.|..+...+-.++.+.+.+- ++.++- .++-.- +-.+.+.+..++... +.++.+.. ..|..|
T Consensus 103 ~~~~l~iagG~Giap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~g 182 (232)
T cd06212 103 DRPIVLIGGGSGMAPLLSLLRDMAASGSDRPVRFFYGARTARDLFYLEEIAALGEKIPDFTFIPALSESPDDEGWSGETG 182 (232)
T ss_pred CCcEEEEecCcchhHHHHHHHHHHhcCCCCcEEEEEeccchHHhccHHHHHHHHHhCCCEEEEEEECCCCCCCCCcCCcc
Confidence 4679999999887777776666655432 354542 222110 112445444443332 22333211 111111
Q ss_pred HHHHHHHHhccccCCCCCeEEeecCCCCCCCHHHHHHHcCCCHHHHH
Q 015415 353 ASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIV 399 (407)
Q Consensus 353 s~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~gl~~~~I~ 399 (407)
.+.+.+.+.. .........++.+..+...........|++.++|.
T Consensus 183 -~~~~~~~~~~-~~~~~~~v~~CGp~~~~~~v~~~l~~~G~~~~~i~ 227 (232)
T cd06212 183 -LVTEVVQRNE-ATLAGCDVYLCGPPPMIDAALPVLEMSGVPPDQIF 227 (232)
T ss_pred -cHHHHHHhhc-cCccCCEEEEECCHHHHHHHHHHHHHcCCCHHHee
Confidence 2222222211 01112346677766665554444456788887763
No 365
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=23.34 E-value=5e+02 Score=23.30 Aligned_cols=65 Identities=15% Similarity=0.045 Sum_probs=36.2
Q ss_pred EEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhc----CCcEEEEecCccccchHHHHH
Q 015415 289 ILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKK----THRVLIVEECMRTGGIGASLT 356 (407)
Q Consensus 289 Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~----~~~vvvvEe~~~~GGlGs~I~ 356 (407)
|.+.-+-...+.++++.|++-|+..++ .+-+....+++. .+.+++ .-.|++.=-+. .+.|..-|+
T Consensus 4 imGS~SD~~~~~~a~~~L~~~gi~~dv-~V~SaHRtp~~~-~~~~~~a~~~g~~viIa~AG~-aa~Lpgvva 72 (156)
T TIGR01162 4 IMGSDSDLPTMKKAADILEEFGIPYEL-RVVSAHRTPELM-LEYAKEAEERGIKVIIAGAGG-AAHLPGMVA 72 (156)
T ss_pred EECcHhhHHHHHHHHHHHHHcCCCeEE-EEECcccCHHHH-HHHHHHHHHCCCeEEEEeCCc-cchhHHHHH
Confidence 334446678899999999988887554 444555555433 344432 22455444333 244444443
No 366
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=23.31 E-value=3.7e+02 Score=24.58 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=19.3
Q ss_pred CCcEEEEEechhHHHHHHHHHHHhhCC
Q 015415 284 GEHVTILTYSRMRYHVMQAAKTLVNKG 310 (407)
Q Consensus 284 G~dv~Iia~G~~~~~al~Aa~~L~~~G 310 (407)
+.++++|+.|......+..++.+.+++
T Consensus 107 ~~~~vliagG~Giap~~~~~~~~~~~~ 133 (235)
T cd06217 107 GDPVVLLAGGSGIVPLMSMIRYRRDLG 133 (235)
T ss_pred CceEEEEecCcCccHHHHHHHHHHhcC
Confidence 467999999987766666666665544
No 367
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=23.31 E-value=2.8e+02 Score=26.40 Aligned_cols=72 Identities=15% Similarity=0.113 Sum_probs=44.5
Q ss_pred cCCceEEee-cCCcEEEEEechhHHHHHHHHHHHhhCC--CCceEEE-eccc-ccCchhhHHHHHhcCCcEEEEecCc
Q 015415 274 NLEEAEMVR-PGEHVTILTYSRMRYHVMQAAKTLVNKG--YDPEVID-IRSL-KPFDLYTIGNSIKKTHRVLIVEECM 346 (407)
Q Consensus 274 ~~Gk~~vl~-eG~dv~Iia~G~~~~~al~Aa~~L~~~G--i~v~VI~-~~~l-~Pfd~~~l~~~~~~~~~vvvvEe~~ 346 (407)
|+|++.... .+..+++|+-|..+...+..++.+.++| .++.++- .++= .-+..+.+.+...+ ..+.++++++
T Consensus 96 P~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~~~~~V~~~~G~~~~~dl~~~~el~~~~~~-~~~~~~~~~~ 172 (252)
T COG0543 96 PLGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKGDANKVTLLYGARTAKDLLLLDELEELAEK-EVHPVTDDGW 172 (252)
T ss_pred CCCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcCCCceEEEEEeccChhhcccHHHHHHhhcC-cEEEEECCCC
Confidence 556555443 3455999999999999999999998888 4444443 2221 11333445444443 4567776555
No 368
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=23.10 E-value=2.7e+02 Score=23.17 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=29.1
Q ss_pred EEechhHH----HHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCc
Q 015415 290 LTYSRMRY----HVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECM 346 (407)
Q Consensus 290 ia~G~~~~----~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~ 346 (407)
|-|+++.. .|...++.|.+.|+++.++++....| + .+.+.+.|++.=..+
T Consensus 3 Iiy~S~tGnT~~~A~~i~~~~~~~g~~v~~~~~~~~~~---~----~l~~~d~iilgspty 56 (140)
T TIGR01753 3 IVYASMTGNTEEMANIIAEGLKEAGAEVDLLEVADADA---E----DLLSYDAVLLGCSTW 56 (140)
T ss_pred EEEECCCcHHHHHHHHHHHHHHhcCCeEEEEEcccCCH---H----HHhcCCEEEEEcCCC
Confidence 34555444 44444556666788999998776533 1 133466666655544
No 369
>TIGR01718 Uridine-psphlse uridine phosphorylase. Sequences from Clostridium, Streptomyces, Treponema, Halobacterium and Pyrobaculum were included above trusted on the basis of sequence homology and a PAM-based neighbor-joining tree. A clade including second sequences from Halobacterium and Vibrio was somewhat more distantly related and may represent a slightly different substrate specificity - these were placed below the noise cutoff. More distantly related is a clade of archaeal sequences which as related to the DeoD family of inosine phosphorylases (TIGR00107) as they are to these uridine phosphorylases. This clade includes a characterized protein from Sulfolobus solfataricus which has been mis-named as a methylthioadenosine phosphorylase, but which acts on inosine and guanosine - it is unclear whether uridine has been evaluated as a substrate.
Probab=22.98 E-value=3.1e+02 Score=26.09 Aligned_cols=79 Identities=13% Similarity=0.159 Sum_probs=48.4
Q ss_pred EEEeeCCHHHHHHHHHHHHhcCCCEEEeeccccccCCCCCCCccccccCCceEEeecCCcEEEEEechhHHHHHHHHHHH
Q 015415 227 QMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTL 306 (407)
Q Consensus 227 ~V~~P~d~~e~~~~~~~a~~~~~Pv~ir~~r~~y~~~~~v~~~~~~~~~Gk~~vl~eG~dv~Iia~G~~~~~al~Aa~~L 306 (407)
.|+.|.||+++..+-.. + +++..+..+| .+.+-.| .-+|.+++++++|.....|--++++|
T Consensus 14 ~vi~~Gdp~r~~~ia~~-l--~~~~~~~~~r------------~~~~~~G----~~~g~~v~v~~~GiG~~~aai~~~eL 74 (245)
T TIGR01718 14 YVILPGDPDRVEKIAAH-M--DKPVKVASNR------------EFVTYRG----ELDGKPVIVCSTGIGGPSTAIAVEEL 74 (245)
T ss_pred eEEecCCHHHHHHHHHh-c--CCcEEEeccC------------CEEEEEE----EECCEEEEEEcCCCCHHHHHHHHHHH
Confidence 48999999999976653 2 3333332111 1211122 22678999999998777766677777
Q ss_pred hhCCCCceEEEecccccCc
Q 015415 307 VNKGYDPEVIDIRSLKPFD 325 (407)
Q Consensus 307 ~~~Gi~v~VI~~~~l~Pfd 325 (407)
-+.|.+. +|.+-+-=-++
T Consensus 75 i~~g~~~-iIr~GtaG~l~ 92 (245)
T TIGR01718 75 AQLGART-FIRVGTTGAIQ 92 (245)
T ss_pred HHhCCCE-EEEeeccccCC
Confidence 6667653 66665544443
No 370
>PF12500 TRSP: TRSP domain C terminus to PRTase_2 ; InterPro: IPR022537 This domain is found in bacteria, and is typically between 174 and 217 amino acids in length. There is a conserved TRSP sequence motif.
Probab=22.86 E-value=1.2e+02 Score=27.10 Aligned_cols=33 Identities=30% Similarity=0.424 Sum_probs=28.5
Q ss_pred cCCcEEEEEechhHHHHHHHHHHHhhCCCCceE
Q 015415 283 PGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEV 315 (407)
Q Consensus 283 eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~V 315 (407)
.+.+++++++|-..+..+..++.|+++|.+|.+
T Consensus 56 ~~~~vLVLGTgEfMy~Pl~lA~~Le~~g~~V~~ 88 (155)
T PF12500_consen 56 PGERVLVLGTGEFMYLPLLLAEELEQAGADVRY 88 (155)
T ss_pred CCCcEEEEccchHHHHHHHHHHHHHhcCCceEE
Confidence 578999999999999999999999999865443
No 371
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=22.70 E-value=1.5e+02 Score=27.59 Aligned_cols=57 Identities=16% Similarity=0.130 Sum_probs=37.7
Q ss_pred EEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcC--CcEEEEecCc
Q 015415 287 VTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKT--HRVLIVEECM 346 (407)
Q Consensus 287 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~--~~vvvvEe~~ 346 (407)
++|++-|.......++++.|++.|+.+-.|-+.. .|.+.|.+..... ++++.+++-.
T Consensus 112 villTDG~s~~~~~~~a~~lk~~gv~i~~VgvG~---~~~~~L~~ias~~~~~~~f~~~~~~ 170 (224)
T cd01475 112 GIVVTDGRPQDDVSEVAAKARALGIEMFAVGVGR---ADEEELREIASEPLADHVFYVEDFS 170 (224)
T ss_pred EEEEcCCCCcccHHHHHHHHHHCCcEEEEEeCCc---CCHHHHHHHhCCCcHhcEEEeCCHH
Confidence 3455556444456677888988888876666554 5788888877653 4677776643
No 372
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=22.64 E-value=2.8e+02 Score=27.43 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=19.7
Q ss_pred CchhhHHHHHhcCCcEEEEecCccccch
Q 015415 324 FDLYTIGNSIKKTHRVLIVEECMRTGGI 351 (407)
Q Consensus 324 fd~~~l~~~~~~~~~vvvvEe~~~~GGl 351 (407)
+|.+.|.+.+++++..++||.....|+.
T Consensus 146 ~~i~~I~~l~~~~g~~livD~~~~~g~~ 173 (363)
T TIGR02326 146 NPIEAVAKLAHRHGKVTIVDAMSSFGGI 173 (363)
T ss_pred CcHHHHHHHHHHcCCEEEEEccccccCc
Confidence 5667788888888877777775555553
No 373
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=22.51 E-value=1.8e+02 Score=28.62 Aligned_cols=55 Identities=25% Similarity=0.384 Sum_probs=34.3
Q ss_pred cCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEeccc----------ccCchhhHHHHHhcCCcEE
Q 015415 283 PGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSL----------KPFDLYTIGNSIKKTHRVL 340 (407)
Q Consensus 283 eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l----------~Pfd~~~l~~~~~~~~~vv 340 (407)
.++++.|+++|.+... ++..|+..|.++.++|-+.- ++.+.+.+.+.+++.+-|+
T Consensus 151 ~g~kvlViG~G~iG~~---~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI 215 (296)
T PRK08306 151 HGSNVLVLGFGRTGMT---LARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIF 215 (296)
T ss_pred CCCEEEEECCcHHHHH---HHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEE
Confidence 4688999999985544 45556666888888876632 2223334555566665444
No 374
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=22.33 E-value=2.1e+02 Score=29.08 Aligned_cols=57 Identities=18% Similarity=0.267 Sum_probs=37.9
Q ss_pred CcEEEEEech-hHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHh-cCCcEEEEec
Q 015415 285 EHVTILTYSR-MRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIK-KTHRVLIVEE 344 (407)
Q Consensus 285 ~dv~Iia~G~-~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~-~~~~vvvvEe 344 (407)
.++.|++.+. ....+++.+..|++.|+.|++ +... +++. +.+...-+ +...++++.+
T Consensus 323 ~~vlV~~~~~~~~~~~~~i~~~Lr~~gi~v~~-~~~~-~~l~-k~~~~a~~~g~~~~i~ig~ 381 (397)
T TIGR00442 323 PDVYVVPLGEEAELEALKLAQKLRKAGIRVEV-DLGG-RKLK-KQLKYADKLGARFAVILGE 381 (397)
T ss_pred CcEEEEEeCHHHHHHHHHHHHHHHhCCCeEEE-eCCC-CCHH-HHHHHHHHcCCCEEEEECh
Confidence 4788888775 557789999999999999976 4332 3443 33433322 3467787765
No 375
>PF08859 DGC: DGC domain; InterPro: IPR014958 This protein appears to be a zinc binding domain from the conservation of four potential chelating cysteines. The protein is named after a conserved central motif, the function is unknown.
Probab=22.20 E-value=2.6e+02 Score=23.35 Aligned_cols=51 Identities=16% Similarity=0.209 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCcc
Q 015415 295 MRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMR 347 (407)
Q Consensus 295 ~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~ 347 (407)
.-..+.+|+.+|.++|. ...+.+.-+.- +.+.+.+.+++.+++|++|-...
T Consensus 12 ~Gqla~~aA~~l~~~~~-~~~~Cla~v~~-~~~~~~~~a~~~~~iIaIDGC~~ 62 (110)
T PF08859_consen 12 VGQLANQAAVELTREGP-GEMSCLAGVGA-GVEGLVKSARSARPIIAIDGCPL 62 (110)
T ss_pred HhHHHHHHHHHHHHcCC-eeEEechhhhc-CcHHHHHHHhcCCceEEECCCHH
Confidence 34667888989988875 55555444432 44667788998889999998874
No 376
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=21.92 E-value=4.7e+02 Score=24.23 Aligned_cols=36 Identities=11% Similarity=0.051 Sum_probs=21.2
Q ss_pred ccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHH
Q 015415 322 KPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAIT 360 (407)
Q Consensus 322 ~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~ 360 (407)
.+++.+.+.+.++..+-++ .-... .|++..+.+.+.
T Consensus 262 g~~~~~~~~~~~~~~di~i-~~~~~--~~~~~~~~Ea~~ 297 (374)
T cd03801 262 GFVPDEDLPALYAAADVFV-LPSLY--EGFGLVLLEAMA 297 (374)
T ss_pred eccChhhHHHHHHhcCEEE-ecchh--ccccchHHHHHH
Confidence 3445566777777776433 33222 566777777765
No 377
>PRK05569 flavodoxin; Provisional
Probab=21.86 E-value=1.8e+02 Score=24.54 Aligned_cols=48 Identities=10% Similarity=0.072 Sum_probs=27.8
Q ss_pred echhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCc
Q 015415 292 YSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECM 346 (407)
Q Consensus 292 ~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~ 346 (407)
+|+.-..|...++.+++.|.++.++++.... .. .+.+++.|++.=..+
T Consensus 12 tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~~---~~----~~~~~d~iilgsPty 59 (141)
T PRK05569 12 GGNVEVLANTIADGAKEAGAEVTIKHVADAK---VE----DVLEADAVAFGSPSM 59 (141)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEEECCcCC---HH----HHhhCCEEEEECCCc
Confidence 3444455666666676678888777765432 21 244566666655544
No 378
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=21.84 E-value=1.4e+02 Score=27.18 Aligned_cols=29 Identities=14% Similarity=0.114 Sum_probs=25.6
Q ss_pred cEEEEEechhHHHHHHHHHHHhhCCCCce
Q 015415 286 HVTILTYSRMRYHVMQAAKTLVNKGYDPE 314 (407)
Q Consensus 286 dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~ 314 (407)
.+.|++|......|.+.+++|+++|..+.
T Consensus 67 p~~L~G~S~Gg~lA~E~A~~Le~~G~~v~ 95 (229)
T PF00975_consen 67 PYVLAGWSFGGILAFEMARQLEEAGEEVS 95 (229)
T ss_dssp SEEEEEETHHHHHHHHHHHHHHHTT-SES
T ss_pred CeeehccCccHHHHHHHHHHHHHhhhccC
Confidence 68999999999999999999999999764
No 379
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=21.72 E-value=5.2e+02 Score=22.72 Aligned_cols=83 Identities=10% Similarity=0.113 Sum_probs=41.1
Q ss_pred EEEechhHHHHHHHHHHHhhC--CCCceEEEecccccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhcc-cc
Q 015415 289 ILTYSRMRYHVMQAAKTLVNK--GYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENF-HD 365 (407)
Q Consensus 289 Iia~G~~~~~al~Aa~~L~~~--Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~-~~ 365 (407)
+|-|+++.....++++.+.+. +..+.++++....| . .+.+++.+++.=..+-.|.+-..+..++.... ..
T Consensus 3 ~IiY~S~tGnTe~vA~~Ia~~l~~~~~~i~~~~~~~~---~----~l~~~d~ii~gspty~~g~~p~~~~~fl~~l~~~~ 75 (167)
T TIGR01752 3 GIFYGTDTGNTEGIAEKIQKELGEDDVDVFNIAKASK---E----DLNAYDKLILGTPTWGVGELQEDWEDFLPTLEELD 75 (167)
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCceEEEEcccCCH---h----HHhhCCEEEEEecCCCCCcCcHHHHHHHHHhhcCC
Confidence 445677776666666666442 23466777655432 1 23455666555544434445444444443211 00
Q ss_pred CCCCCeEEeecCC
Q 015415 366 YLDAPIVCLSSQD 378 (407)
Q Consensus 366 ~~~~~v~~ig~~d 378 (407)
....++.-+|.-|
T Consensus 76 l~gk~v~~fg~g~ 88 (167)
T TIGR01752 76 FTGKTVALFGLGD 88 (167)
T ss_pred CCCCEEEEEecCC
Confidence 0134566666544
No 380
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=21.66 E-value=8.9e+02 Score=25.05 Aligned_cols=78 Identities=13% Similarity=0.013 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHHHhcC-------------CeeEEEecchhHHH--HHHHHHHHhhhhhchhcCCcccc-cEEEEe-cCCC
Q 015415 142 AENSFTGMGIGAAMTG-------------LRPIVEGMNMGFLL--LAFNQISNNCGMLHYTSGGQFTI-PIVIRG-PGGV 204 (407)
Q Consensus 142 aE~~~vg~A~GlA~~G-------------~rp~~~t~~~~f~~--ra~dqi~~~~a~~~~~~gg~~~l-pvvi~~-~~G~ 204 (407)
+=-.-+++|+|||++. .|+||- +.-.=++ .+||.+. .++.. ++ +++++. .++.
T Consensus 119 SLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvl-lGDGEl~EG~vwEA~~-~Ag~~--------kL~NLivIvD~N~~ 188 (386)
T cd02017 119 SMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAF-LGDGEMDEPESLGAIG-LAARE--------KLDNLIFVVNCNLQ 188 (386)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEE-EcccccccHHHHHHHH-HHHHh--------CCCCEEEEEECCCC
Confidence 3344566677776642 234443 3322233 5677664 34443 44 455554 4443
Q ss_pred CCCCCcCcc-----chHHHHHccCCCcEEEee
Q 015415 205 GRQLGAEHS-----QRLESYFQSIPGIQMVAC 231 (407)
Q Consensus 205 ~~~~G~tHs-----q~~ea~~~~iPgl~V~~P 231 (407)
. -+|.+-. ..+..-|+++ ||.|+..
T Consensus 189 q-idG~t~~v~~~~e~l~~kf~Af-GW~vi~V 218 (386)
T cd02017 189 R-LDGPVRGNGKIIQELEGIFRGA-GWNVIKV 218 (386)
T ss_pred c-cCCcccccccCchhHHHHHHhc-CCEEEEE
Confidence 2 2333321 3444677776 8988876
No 381
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=21.61 E-value=4.5e+02 Score=21.40 Aligned_cols=76 Identities=13% Similarity=0.069 Sum_probs=44.1
Q ss_pred cEEEEEechhHHHHHHH----HHHHhhCC--CCceEEEecccccCchhhHHHHHh-cCCcEEEEecCccccchHHHHHHH
Q 015415 286 HVTILTYSRMRYHVMQA----AKTLVNKG--YDPEVIDIRSLKPFDLYTIGNSIK-KTHRVLIVEECMRTGGIGASLTAA 358 (407)
Q Consensus 286 dv~Iia~G~~~~~al~A----a~~L~~~G--i~v~VI~~~~l~Pfd~~~l~~~~~-~~~~vvvvEe~~~~GGlGs~I~~~ 358 (407)
.++|++.|+.-..+.+. ++.|+++. ..+.+--+..-.|--.+.|.+..+ +.++|+++-=....|..-..|.+.
T Consensus 2 a~llv~HGS~~~~~~~~~~~l~~~l~~~~~~~~v~~afle~~~P~~~~~l~~l~~~g~~~i~vvP~fL~~G~h~~~i~~~ 81 (117)
T cd03414 2 AVVLVGRGSSDPDANADVAKIARLLEEGTGFARVETAFAAATRPSLPEALERLRALGARRVVVLPYLLFTGVLMDRIEEQ 81 (117)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCHHHHHHHHHHcCCCEEEEEechhcCCchHHHHHHH
Confidence 36789999765444433 34444432 234333333335666677776654 357888887666666666666655
Q ss_pred HHh
Q 015415 359 ITE 361 (407)
Q Consensus 359 l~e 361 (407)
+.+
T Consensus 82 ~~~ 84 (117)
T cd03414 82 VAE 84 (117)
T ss_pred HHH
Confidence 543
No 382
>PRK10537 voltage-gated potassium channel; Provisional
Probab=21.58 E-value=1.9e+02 Score=29.77 Aligned_cols=32 Identities=22% Similarity=0.163 Sum_probs=24.4
Q ss_pred CCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEe
Q 015415 284 GEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDI 318 (407)
Q Consensus 284 G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~ 318 (407)
..+++|+++|..... .+++|+++|+++.||+.
T Consensus 240 k~HvII~G~g~lg~~---v~~~L~~~g~~vvVId~ 271 (393)
T PRK10537 240 KDHFIICGHSPLAIN---TYLGLRQRGQAVTVIVP 271 (393)
T ss_pred CCeEEEECCChHHHH---HHHHHHHCCCCEEEEEC
Confidence 356889999887655 55678888999988884
No 383
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=21.42 E-value=2.9e+02 Score=21.69 Aligned_cols=74 Identities=16% Similarity=0.076 Sum_probs=42.1
Q ss_pred EEEEEechhHH-----HHHHHHHHHhhC--CCCceEEEecccccCchhhHHHHHhc-CCcEEEEecCccccch-HHHHHH
Q 015415 287 VTILTYSRMRY-----HVMQAAKTLVNK--GYDPEVIDIRSLKPFDLYTIGNSIKK-THRVLIVEECMRTGGI-GASLTA 357 (407)
Q Consensus 287 v~Iia~G~~~~-----~al~Aa~~L~~~--Gi~v~VI~~~~l~Pfd~~~l~~~~~~-~~~vvvvEe~~~~GGl-Gs~I~~ 357 (407)
+++++.|+... ...+.++.|++. +..+.+--.....|.-++.+.+..+. .++|+++-=....|.= ...+..
T Consensus 2 lllv~HGs~~~s~~~~~~~~~~~~l~~~~~~~~v~~a~~~~~~P~i~~~l~~l~~~g~~~vvvvPl~~~~g~h~~~di~~ 81 (101)
T cd03409 2 LLVVGHGSPYKDPYKKDIEAQAHNLAESLPDFPYYVGFQSGLGPDTEEAIRELAEEGYQRVVIVPLAPVSGDEVFYDIDS 81 (101)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeCccccChhhHHHHHH
Confidence 57788887653 333444556553 34454444444478878887776553 4778888777653332 224544
Q ss_pred HHH
Q 015415 358 AIT 360 (407)
Q Consensus 358 ~l~ 360 (407)
.+.
T Consensus 82 ~~~ 84 (101)
T cd03409 82 EIG 84 (101)
T ss_pred HHH
Confidence 443
No 384
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.39 E-value=89 Score=31.41 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhhhCCCEEEEeC
Q 015415 91 EALREGLEEEMDRDPHVCVMGE 112 (407)
Q Consensus 91 ~a~~~~L~~l~~~d~~vvvi~a 112 (407)
..|.++|...+++||||+++|+
T Consensus 185 ~sF~~aLraALReDPDVIlvGE 206 (353)
T COG2805 185 LSFANALRAALREDPDVILVGE 206 (353)
T ss_pred HHHHHHHHHHhhcCCCEEEEec
Confidence 5688999999999999999986
No 385
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=21.26 E-value=1.6e+02 Score=28.74 Aligned_cols=35 Identities=9% Similarity=0.044 Sum_probs=19.2
Q ss_pred CCCceEEEecccccCchhhHHHHHhcCCcEEEEecC
Q 015415 310 GYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEEC 345 (407)
Q Consensus 310 Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~ 345 (407)
++.+=+.| ++=.+++.+.+.+++++..+|+-+=++
T Consensus 130 ~~pvilYn-~~g~~l~~~~~~~La~~~~nvvgiKds 164 (296)
T TIGR03249 130 DLGVIVYQ-RDNAVLNADTLERLADRCPNLVGFKDG 164 (296)
T ss_pred CCCEEEEe-CCCCCCCHHHHHHHHhhCCCEEEEEeC
Confidence 34555555 333456666666655545566655554
No 386
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=21.18 E-value=5.5e+02 Score=22.24 Aligned_cols=42 Identities=14% Similarity=0.159 Sum_probs=32.6
Q ss_pred CCCceEEEecccccCchhhHHHHHhc-CCcEEEE-----ecCccccch
Q 015415 310 GYDPEVIDIRSLKPFDLYTIGNSIKK-THRVLIV-----EECMRTGGI 351 (407)
Q Consensus 310 Gi~v~VI~~~~l~Pfd~~~l~~~~~~-~~~vvvv-----Ee~~~~GGl 351 (407)
--+++||.+.|.-.++.+.+.+.+++ .+.|+|+ |=|+..|-.
T Consensus 27 p~~vRiIrv~CsGrvn~~fvl~Al~~GaDGV~v~GC~~geCHy~~GN~ 74 (132)
T COG1908 27 PPNVRIIRVMCSGRVNPEFVLKALRKGADGVLVAGCKIGECHYISGNY 74 (132)
T ss_pred CCceEEEEeeccCccCHHHHHHHHHcCCCeEEEecccccceeeeccch
Confidence 45799999999999999999888876 4778876 345555543
No 387
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=20.99 E-value=5.6e+02 Score=23.24 Aligned_cols=112 Identities=8% Similarity=-0.012 Sum_probs=52.0
Q ss_pred CCcEEEEEechhHHHHHHHHHHHhhCC--CCceEEE-ecccccCc-hhhHHHHHhcCCc--E-EEEecCcc-ccch-HHH
Q 015415 284 GEHVTILTYSRMRYHVMQAAKTLVNKG--YDPEVID-IRSLKPFD-LYTIGNSIKKTHR--V-LIVEECMR-TGGI-GAS 354 (407)
Q Consensus 284 G~dv~Iia~G~~~~~al~Aa~~L~~~G--i~v~VI~-~~~l~Pfd-~~~l~~~~~~~~~--v-vvvEe~~~-~GGl-Gs~ 354 (407)
...+++||.|..+...+..++.+..++ -++.++- .++...+. .+.|.+..++... + .++.+... .++. -..
T Consensus 97 ~~~~v~iagG~Giap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (222)
T cd06194 97 EGPLLLVGAGTGLAPLWGIARAALRQGHQGEIRLVHGARDPDDLYLHPALLWLAREHPNFRYIPCVSEGSQGDPRVRAGR 176 (222)
T ss_pred CCCEEEEecCcchhhHHHHHHHHHhcCCCccEEEEEecCChhhccCHHHHHHHHHHCCCeEEEEEEccCCCCCcccccch
Confidence 457899999988877777776654433 2344332 22222222 2445544443322 2 33333211 1111 112
Q ss_pred HHHHHHhccccCCCCCeEEeecCCCCCCCHHHHHHHcCCCHHHHH
Q 015415 355 LTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIV 399 (407)
Q Consensus 355 I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~gl~~~~I~ 399 (407)
+...+... .......++.+..++..........|++.+.|.
T Consensus 177 ~~~~~~~~----~~~~~vyicGp~~m~~~~~~~L~~~Gv~~~~i~ 217 (222)
T cd06194 177 IAAHLPPL----TRDDVVYLCGAPSMVNAVRRRAFLAGAPMKRIY 217 (222)
T ss_pred hhhhhccc----cCCCEEEEeCCHHHHHHHHHHHHHcCCCHHHee
Confidence 22222110 112345666665554443333345788888763
No 388
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=20.91 E-value=1.9e+02 Score=27.10 Aligned_cols=46 Identities=15% Similarity=0.107 Sum_probs=36.2
Q ss_pred EEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHH
Q 015415 287 VTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNS 332 (407)
Q Consensus 287 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~ 332 (407)
+++.+.|..-.-++-|+..|...|.+|+|+-+.--++...+..+..
T Consensus 53 ~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~ 98 (203)
T COG0062 53 LVLCGPGNNGGDGLVAARHLKAAGYAVTVLLLGDPKKLKTEAARAN 98 (203)
T ss_pred EEEECCCCccHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHH
Confidence 3455677888999999999999999999998887777776665444
No 389
>PRK08639 threonine dehydratase; Validated
Probab=20.85 E-value=7.9e+02 Score=25.32 Aligned_cols=113 Identities=19% Similarity=0.226 Sum_probs=59.2
Q ss_pred EEEeeCCHHHHHHHHHHHHhcCCCEEEeeccccccCCCCCCCccccccCCceEEee-cCCcEE-EEEechhHHHHHHHHH
Q 015415 227 QMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVR-PGEHVT-ILTYSRMRYHVMQAAK 304 (407)
Q Consensus 227 ~V~~P~d~~e~~~~~~~a~~~~~Pv~ir~~r~~y~~~~~v~~~~~~~~~Gk~~vl~-eG~dv~-Iia~G~~~~~al~Aa~ 304 (407)
.|+.++..+-+..+-..|....-|+.|..+..- +..|...++ -|++++ ++-.|.....+.+.+.
T Consensus 75 ~Vv~aSsGN~g~alA~~a~~~G~~~~IvmP~~~--------------~~~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~ 140 (420)
T PRK08639 75 GVVCASAGNHAQGVAYACRHLGIPGVIFMPVTT--------------PQQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQ 140 (420)
T ss_pred EEEEECccHHHHHHHHHHHHcCCCEEEEECCCC--------------hHHHHHHHHHcCCCeeEEEEeCcCHHHHHHHHH
Confidence 477777777777666666666667777544321 001111122 255532 3345777777877777
Q ss_pred HHhhCCCCceEEEecccccCchhhH--------HHHHhcCC-----cEEEEecCccccchHHHHHHHHHh
Q 015415 305 TLVNKGYDPEVIDIRSLKPFDLYTI--------GNSIKKTH-----RVLIVEECMRTGGIGASLTAAITE 361 (407)
Q Consensus 305 ~L~~~Gi~v~VI~~~~l~Pfd~~~l--------~~~~~~~~-----~vvvvEe~~~~GGlGs~I~~~l~e 361 (407)
++.++. +..++.|||...+ .+.++... ..+++-=+ .||+-+-|+.++.+
T Consensus 141 ~~a~~~------g~~~~~~~~~~~~~~G~~tig~EI~eq~~~~~~~D~vv~~vG--~GG~~aGva~~~k~ 202 (420)
T PRK08639 141 EYAEET------GATFIPPFDDPDVIAGQGTVAVEILEQLEKEGSPDYVFVPVG--GGGLISGVTTYLKE 202 (420)
T ss_pred HHHHhc------CCcccCCCCChhHhcchhHHHHHHHHhccccCCCCEEEEecC--hhHHHHHHHHHHHH
Confidence 775431 2445677764311 12222221 23444333 36676677777765
No 390
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=20.83 E-value=2.4e+02 Score=28.73 Aligned_cols=57 Identities=18% Similarity=0.217 Sum_probs=36.5
Q ss_pred CcEEEEEech-hHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHH-hcCCcEEEEec
Q 015415 285 EHVTILTYSR-MRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSI-KKTHRVLIVEE 344 (407)
Q Consensus 285 ~dv~Iia~G~-~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~-~~~~~vvvvEe 344 (407)
.++.|+..+. ....+++.++.|+++|+.+.+ +... +.+. +.+...- ++...++++.+
T Consensus 319 ~~vlI~~~~~~~~~~a~~i~~~Lr~~Gi~v~i-~~~~-~~~~-~~~~~a~~~gi~~~viig~ 377 (412)
T PRK00037 319 VDVYVVPLGEDAELAALKLAEKLRAAGIRVEL-DYGG-RKLK-KQFKYADKSGARFVLILGE 377 (412)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHCCCeEEE-eCCC-CCHH-HHHHHHHHcCCCEEEEECh
Confidence 5788888775 346688999999999999876 4332 2332 3333322 23456677766
No 391
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=20.78 E-value=4.6e+02 Score=25.20 Aligned_cols=85 Identities=13% Similarity=0.192 Sum_probs=52.9
Q ss_pred EEEEEechhHHHHHHHHHHHhhCCC---Cc------eEEE------ecccccC-chhhHHHHHhcCCcEEEEecCccccc
Q 015415 287 VTILTYSRMRYHVMQAAKTLVNKGY---DP------EVID------IRSLKPF-DLYTIGNSIKKTHRVLIVEECMRTGG 350 (407)
Q Consensus 287 v~Iia~G~~~~~al~Aa~~L~~~Gi---~v------~VI~------~~~l~Pf-d~~~l~~~~~~~~~vvvvEe~~~~GG 350 (407)
+.|++ .+.++.+.++.|.++|. .+ .+.. .....+| |.+.+.+.+++.+--++||-.++
T Consensus 3 ILvlg---GTtE~r~la~~L~~~g~v~~sv~t~~g~~~~~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~vIDATHP--- 76 (249)
T PF02571_consen 3 ILVLG---GTTEGRKLAERLAEAGYVIVSVATSYGGELLKPELPGLEVRVGRLGDEEGLAEFLRENGIDAVIDATHP--- 76 (249)
T ss_pred EEEEe---chHHHHHHHHHHHhcCCEEEEEEhhhhHhhhccccCCceEEECCCCCHHHHHHHHHhCCCcEEEECCCc---
Confidence 44553 45677778888887774 11 0110 1124678 99999999998887788888776
Q ss_pred hHHHHHHHHHhccccCCCCCeEEeecCC
Q 015415 351 IGASLTAAITENFHDYLDAPIVCLSSQD 378 (407)
Q Consensus 351 lGs~I~~~l~e~~~~~~~~~v~~ig~~d 378 (407)
++..|.+...+.+- .+..|..|+--+.
T Consensus 77 fA~~is~na~~a~~-~~~ipylR~eRp~ 103 (249)
T PF02571_consen 77 FAAEISQNAIEACR-ELGIPYLRFERPS 103 (249)
T ss_pred hHHHHHHHHHHHHh-hcCcceEEEEcCC
Confidence 45555555544331 2456777766544
No 392
>TIGR03586 PseI pseudaminic acid synthase.
Probab=20.74 E-value=4.2e+02 Score=26.68 Aligned_cols=70 Identities=17% Similarity=0.145 Sum_probs=45.0
Q ss_pred EEEEEec-hhHHHHHHHHHHHhhCCC-CceEEEecccccCchhh-----HHHHHh-cCCcEEEEecCccccchHHHHHHH
Q 015415 287 VTILTYS-RMRYHVMQAAKTLVNKGY-DPEVIDIRSLKPFDLYT-----IGNSIK-KTHRVLIVEECMRTGGIGASLTAA 358 (407)
Q Consensus 287 v~Iia~G-~~~~~al~Aa~~L~~~Gi-~v~VI~~~~l~Pfd~~~-----l~~~~~-~~~~vvvvEe~~~~GGlGs~I~~~ 358 (407)
=+|+++| +...+...|++.+++.|. ++.+..+.+-.|-+.+. |. .++ .++..|-+-+|. .|..-.+++.
T Consensus 136 PvilstG~~t~~Ei~~Av~~i~~~g~~~i~LlhC~s~YP~~~~~~nL~~i~-~lk~~f~~pVG~SDHt--~G~~~~~aAv 212 (327)
T TIGR03586 136 PIIMSTGIATLEEIQEAVEACREAGCKDLVLLKCTSSYPAPLEDANLRTIP-DLAERFNVPVGLSDHT--LGILAPVAAV 212 (327)
T ss_pred cEEEECCCCCHHHHHHHHHHHHHCCCCcEEEEecCCCCCCCcccCCHHHHH-HHHHHhCCCEEeeCCC--CchHHHHHHH
Confidence 3567888 466889999999988887 67777776666655443 32 333 355444355676 4565555555
Q ss_pred H
Q 015415 359 I 359 (407)
Q Consensus 359 l 359 (407)
.
T Consensus 213 a 213 (327)
T TIGR03586 213 A 213 (327)
T ss_pred H
Confidence 4
No 393
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=20.58 E-value=1.4e+02 Score=31.45 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=21.9
Q ss_pred CCcEEEE-EechhHH----HHHHHHHHHhhCCCCceE
Q 015415 284 GEHVTIL-TYSRMRY----HVMQAAKTLVNKGYDPEV 315 (407)
Q Consensus 284 G~dv~Ii-a~G~~~~----~al~Aa~~L~~~Gi~v~V 315 (407)
-++++|+ +||--+. .+.|-++.|+++|++|+.
T Consensus 306 A~~ViIVPGYGmAVAqAQh~v~el~~~L~~~Gv~V~f 342 (462)
T PRK09444 306 SHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRF 342 (462)
T ss_pred CCcEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 3455555 6776664 455677788889999876
No 394
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=20.58 E-value=5.3e+02 Score=27.16 Aligned_cols=17 Identities=12% Similarity=0.421 Sum_probs=11.4
Q ss_pred chhHHHHHHHHHHHhhh
Q 015415 166 NMGFLLLAFNQISNNCG 182 (407)
Q Consensus 166 ~~~f~~ra~dqi~~~~a 182 (407)
...|+--.+|.+..-++
T Consensus 71 ~q~~iKiV~eELv~llG 87 (451)
T COG0541 71 GQQFIKIVYEELVKLLG 87 (451)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 34667777888866555
No 395
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=20.49 E-value=6.7e+02 Score=27.23 Aligned_cols=140 Identities=17% Similarity=0.179 Sum_probs=83.1
Q ss_pred HHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEEecchhH-HHHHHH
Q 015415 97 LEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGF-LLLAFN 175 (407)
Q Consensus 97 L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~~~~f-~~ra~d 175 (407)
+++|.+..=+=+|+++.... + .++-. ...+ ++=-.-+-|+|-++-=+|.|+|.+-.+|++-...++- ..-.|-
T Consensus 15 ~eeL~r~GV~~vvicPGSRS-T---PLala-~~~~-~~i~~hv~~DERsagFfALGlAKas~rPVavi~TSGTA~ANl~P 88 (566)
T COG1165 15 LEELARLGVRDVVICPGSRS-T---PLALA-AAAH-DAITVHVHIDERSAGFFALGLAKASKRPVAVICTSGTAVANLYP 88 (566)
T ss_pred HHHHHHcCCcEEEECCCCCC-c---HHHHH-HHhc-CCeEEEEecccchHHHHHHhhhhhcCCCEEEEEcCcchhhhccH
Confidence 33444555666788876542 1 12112 2344 5556778899999999999999999888876555432 333344
Q ss_pred HHHHhhhhhchhcCCcccccEEEEecCCCC--CCCCcCccchHH--HHHccCCCcEEE--eeCCHHHHHHHHHHHHh---
Q 015415 176 QISNNCGMLHYTSGGQFTIPIVIRGPGGVG--RQLGAEHSQRLE--SYFQSIPGIQMV--ACSTPYNAKGLMKAAIR--- 246 (407)
Q Consensus 176 qi~~~~a~~~~~~gg~~~lpvvi~~~~G~~--~~~G~tHsq~~e--a~~~~iPgl~V~--~P~d~~e~~~~~~~a~~--- 246 (407)
.|. .+.+. ++|+++....=+. .+-|+- |.++ .+|.+.|+..+= .|.+..++...+++...
T Consensus 89 AVi-EA~~s--------rvpLIVLTADRP~EL~~~GAn--QaI~Q~~lfgs~v~~~~~L~~P~~~~~~~~~~~~~~~~~~ 157 (566)
T COG1165 89 AVI-EANLS--------RVPLIVLTADRPPELRGCGAN--QAIDQTGLFGSYVRASIDLPLPEDDIEALWYLRTIASAAA 157 (566)
T ss_pred HHH-hhhhc--------CCceEEEeCCCCHHHhcCCCc--hhhhhhhhhcccchhhccCCCCCCCHHHHHHHHHHHHHHH
Confidence 453 45555 7999988632111 112222 4443 688877775443 56666666665553321
Q ss_pred ------cCCCEEE
Q 015415 247 ------SENPVIL 253 (407)
Q Consensus 247 ------~~~Pv~i 253 (407)
..+||=|
T Consensus 158 ~~a~~~~~GpVHi 170 (566)
T COG1165 158 QQARTPHAGPVHI 170 (566)
T ss_pred HhccCCCCCceEe
Confidence 2567766
No 396
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=20.45 E-value=3.1e+02 Score=27.15 Aligned_cols=111 Identities=12% Similarity=0.032 Sum_probs=51.4
Q ss_pred CCcEEEEEechhHHHHHHHHHHHhhC--CCCceEEEe-ccccc-CchhhHHHHHhcCCc--EE-EEecCcc----ccchH
Q 015415 284 GEHVTILTYSRMRYHVMQAAKTLVNK--GYDPEVIDI-RSLKP-FDLYTIGNSIKKTHR--VL-IVEECMR----TGGIG 352 (407)
Q Consensus 284 G~dv~Iia~G~~~~~al~Aa~~L~~~--Gi~v~VI~~-~~l~P-fd~~~l~~~~~~~~~--vv-vvEe~~~----~GGlG 352 (407)
..++++||.|+.+...+-.++.+.++ ..++.++.- ++-.- +-.+.|.+..+++.. +. +.++... .|-+.
T Consensus 111 ~~~~vliAgG~GItP~~sml~~~~~~~~~~~v~l~y~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~grl~ 190 (332)
T PRK10684 111 EDKYLLLAAGCGVTPIMSMRRWLLKNRPQADVQVIFNVRTPQDVIFADEWRQLKQRYPQLNLTLVAENNATEGFIAGRLT 190 (332)
T ss_pred CCcEEEEecCcCcchHHHHHHHHHhcCCCCCEEEEEeCCChHHhhhHHHHHHHHHHCCCeEEEEEeccCCCCCccccccC
Confidence 35799999998776666666655433 345555532 22210 112445554544432 32 2222111 12222
Q ss_pred HHHHHHHHhccccCCCCCeEEeecCCCCCCCHHHHHHHcCCCHHHH
Q 015415 353 ASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQI 398 (407)
Q Consensus 353 s~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~gl~~~~I 398 (407)
.++...... .+......++.+..+......+....|++.+.|
T Consensus 191 ~~~l~~~~~----~~~~~~vyiCGP~~m~~~v~~~l~~~Gv~~~~i 232 (332)
T PRK10684 191 RELLQQAVP----DLASRTVMTCGPAPYMDWVEQEVKALGVTADRF 232 (332)
T ss_pred HHHHHHhcc----cccCCEEEEECCHHHHHHHHHHHHHcCCCHHHe
Confidence 222211110 011234567776655554434445567777665
No 397
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=20.39 E-value=1.2e+02 Score=27.40 Aligned_cols=58 Identities=16% Similarity=0.371 Sum_probs=33.4
Q ss_pred ecCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccC-------chhhHHHHHhcCCcEEEE
Q 015415 282 RPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPF-------DLYTIGNSIKKTHRVLIV 342 (407)
Q Consensus 282 ~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pf-------d~~~l~~~~~~~~~vvvv 342 (407)
-.|+.++++.||..-.- .|+.|+..|..|.|.+...++-+ ....+.+.++..+-+++.
T Consensus 21 l~Gk~vvV~GYG~vG~g---~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vta 85 (162)
T PF00670_consen 21 LAGKRVVVIGYGKVGKG---IARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTA 85 (162)
T ss_dssp -TTSEEEEE--SHHHHH---HHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-
T ss_pred eCCCEEEEeCCCcccHH---HHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEEC
Confidence 35788999999976554 45567778989999987666543 223456666666544443
No 398
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=20.32 E-value=4.9e+02 Score=22.48 Aligned_cols=28 Identities=4% Similarity=0.089 Sum_probs=13.8
Q ss_pred CCcEEEEEe--chhHHHHHHHHHHHhhCCC
Q 015415 284 GEHVTILTY--SRMRYHVMQAAKTLVNKGY 311 (407)
Q Consensus 284 G~dv~Iia~--G~~~~~al~Aa~~L~~~Gi 311 (407)
+.|++.+++ +.....+.+..+.|+++|.
T Consensus 54 ~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~ 83 (137)
T PRK02261 54 DADAILVSSLYGHGEIDCRGLREKCIEAGL 83 (137)
T ss_pred CCCEEEEcCccccCHHHHHHHHHHHHhcCC
Confidence 344444444 3444455555555555533
No 399
>PRK10126 tyrosine phosphatase; Provisional
Probab=20.31 E-value=3.1e+02 Score=23.75 Aligned_cols=40 Identities=10% Similarity=0.032 Sum_probs=26.5
Q ss_pred HHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCc
Q 015415 300 MQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECM 346 (407)
Q Consensus 300 l~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~ 346 (407)
-.|++.|++.||+.+= +.-++++.+.+ ...+.||++|+.+
T Consensus 47 ~~a~~~l~~~Gid~~~---h~sr~lt~~~~----~~~DlIl~Md~~~ 86 (147)
T PRK10126 47 PTAISVAAEHQLSLEG---HCARQISRRLC----RNYDLILTMEKRH 86 (147)
T ss_pred HHHHHHHHHcCCCcCC---CccccCCHHHh----ccCCEEEECCHHH
Confidence 3466667788988542 44566665543 4578899998765
No 400
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=20.28 E-value=1.5e+02 Score=28.56 Aligned_cols=79 Identities=16% Similarity=0.185 Sum_probs=51.6
Q ss_pred cEEEeeCCHHHHHHHHHHHHhcCCCEEEeeccccccCCCCCCCccccccCCceEEeecCCcEEEEEechhHHHHHHHHHH
Q 015415 226 IQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKT 305 (407)
Q Consensus 226 l~V~~P~d~~e~~~~~~~a~~~~~Pv~ir~~r~~y~~~~~v~~~~~~~~~Gk~~vl~eG~dv~Iia~G~~~~~al~Aa~~ 305 (407)
=.|+.|.||.-+..+-+ ..++|..+-.+| .|....| .-+|+.+++.++|....-+--|.|+
T Consensus 18 ~~vilpGdP~R~~~iA~---lld~~~~va~~R------------ef~~~~g----~~~g~~v~v~StGIGgPSaaIAvEE 78 (248)
T COG2820 18 TLVILPGDPERVEKIAK---LLDNPVLVASNR------------EFRTYTG----TYNGKPVTVCSTGIGGPSAAIAVEE 78 (248)
T ss_pred ceEEecCCHHHHHHHHH---Hhccchhhhhcc------------ceEEEEE----EEcCeEEEEEecCCCCchHHHHHHH
Confidence 34999999987775443 346666664333 1221122 1247889999999888887788889
Q ss_pred HhhCCCCceEEEecccccC
Q 015415 306 LVNKGYDPEVIDIRSLKPF 324 (407)
Q Consensus 306 L~~~Gi~v~VI~~~~l~Pf 324 (407)
|..-|.++ .|.+-|---+
T Consensus 79 L~~lGa~t-fiRVGT~Gal 96 (248)
T COG2820 79 LARLGAKT-FIRVGTTGAL 96 (248)
T ss_pred HHhcCCeE-EEEeeccccc
Confidence 98888664 3666665433
No 401
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=20.27 E-value=6.3e+02 Score=25.64 Aligned_cols=105 Identities=6% Similarity=-0.020 Sum_probs=56.6
Q ss_pred CcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccc-cCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhcc
Q 015415 285 EHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLK-PFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENF 363 (407)
Q Consensus 285 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~-Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~ 363 (407)
-.+.|++.|.......+.++ +.|++ .++ ++- .++.+.+.+.+...+-.+..-.....-|++..+.+++.
T Consensus 270 i~l~ivG~G~~~~~l~~~~~---~~~l~-~~~---~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama--- 339 (415)
T cd03816 270 LLCIITGKGPLKEKYLERIK---ELKLK-KVT---IRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFG--- 339 (415)
T ss_pred EEEEEEecCccHHHHHHHHH---HcCCC-cEE---EEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHH---
Confidence 35667777776555544444 33554 232 232 35677788888887755433333222357777877765
Q ss_pred ccCCCCCeEEeecCCCCCCCHHHHHHH----cCCCHHHHHHHHHHHh
Q 015415 364 HDYLDAPIVCLSSQDVPTPYAGTLEEW----TVVQPAQIVTAVEQLC 406 (407)
Q Consensus 364 ~~~~~~~v~~ig~~d~~~~~~~~l~~~----~gl~~~~I~~~i~~ll 406 (407)
.+.|+..-.. . ...+.+++. .--|++++++++.+++
T Consensus 340 ---~G~PVI~s~~---~-~~~eiv~~~~~G~lv~d~~~la~~i~~ll 379 (415)
T cd03816 340 ---CGLPVCALDF---K-CIDELVKHGENGLVFGDSEELAEQLIDLL 379 (415)
T ss_pred ---cCCCEEEeCC---C-CHHHHhcCCCCEEEECCHHHHHHHHHHHH
Confidence 2456643211 1 111222211 1128899999998876
No 402
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=20.21 E-value=2e+02 Score=26.06 Aligned_cols=74 Identities=14% Similarity=0.209 Sum_probs=38.3
Q ss_pred cCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccc--------cCchhhHHHHHhcCCcEEEEecCccccchH-H
Q 015415 283 PGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLK--------PFDLYTIGNSIKKTHRVLIVEECMRTGGIG-A 353 (407)
Q Consensus 283 eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~--------Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlG-s 353 (407)
+++.++||.||+.-+ .-+.-|++.|++|.|-.-.-=+ -|....+.+.+++.+-|+++=......-+. +
T Consensus 3 ~~k~IAViGyGsQG~---a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L~PD~~q~~vy~~ 79 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGH---AHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLLLPDEVQPEVYEE 79 (165)
T ss_dssp CTSEEEEES-SHHHH---HHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-S-HHHHHHHHHH
T ss_pred CCCEEEEECCChHHH---HHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEeCChHHHHHHHHH
Confidence 467899999998733 2345588889987664333211 133334667777777665554333333333 4
Q ss_pred HHHHHH
Q 015415 354 SLTAAI 359 (407)
Q Consensus 354 ~I~~~l 359 (407)
+|.-.|
T Consensus 80 ~I~p~l 85 (165)
T PF07991_consen 80 EIAPNL 85 (165)
T ss_dssp HHHHHS
T ss_pred HHHhhC
Confidence 444444
No 403
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=20.11 E-value=3.5e+02 Score=24.85 Aligned_cols=26 Identities=4% Similarity=-0.039 Sum_probs=19.9
Q ss_pred CcEEEEEechhHHHHHHHHHHHhhCC
Q 015415 285 EHVTILTYSRMRYHVMQAAKTLVNKG 310 (407)
Q Consensus 285 ~dv~Iia~G~~~~~al~Aa~~L~~~G 310 (407)
.++++|+.|..+...+..++.+.+.+
T Consensus 109 ~~~vliagGtGiaP~~~~l~~~~~~~ 134 (236)
T cd06210 109 RPRWFVAGGTGLAPLLSMLRRMAEWG 134 (236)
T ss_pred ccEEEEccCcchhHHHHHHHHHHhcC
Confidence 57899999988877777777765543
No 404
>PLN02463 lycopene beta cyclase
Probab=20.10 E-value=1e+02 Score=32.24 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=27.0
Q ss_pred CcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCc
Q 015415 285 EHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFD 325 (407)
Q Consensus 285 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd 325 (407)
-|++||+.|..-- .+|..|.+.|++|.||+.....++|
T Consensus 29 ~DVvIVGaGpAGL---alA~~La~~Gl~V~liE~~~~~~~p 66 (447)
T PLN02463 29 VDLVVVGGGPAGL---AVAQQVSEAGLSVCCIDPSPLSIWP 66 (447)
T ss_pred ceEEEECCCHHHH---HHHHHHHHCCCeEEEeccCccchhc
Confidence 4899999887332 2445567789999999986544433
No 405
>PF11181 YflT: Heat induced stress protein YflT
Probab=20.07 E-value=66 Score=26.37 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHH
Q 015415 295 MRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAIT 360 (407)
Q Consensus 295 ~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~ 360 (407)
.-.+++.+++.|+.+|++-.=|.+-+-..-+.+.| ...++ +-.++.+ .+||...+...+.
T Consensus 8 ~~~E~~~~I~~L~~~Gy~~ddI~Vva~d~~~~~~l---~~~t~-~~~~~~~--~~~~~d~~~~~f~ 67 (103)
T PF11181_consen 8 NEEEALSAIEELKAQGYSEDDIYVVAKDKDRTERL---ADQTD-TNTVGAS--EESFWDKIKNFFT 67 (103)
T ss_pred CHHHHHHHHHHHHHcCCCcccEEEEEcCchHHHHH---HHhcC-Cceeccc--cccHHHHHHHhcc
Confidence 45789999999999999888777766533333333 33332 2223333 2788888887765
No 406
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=20.07 E-value=1.1e+02 Score=24.83 Aligned_cols=34 Identities=12% Similarity=0.039 Sum_probs=21.6
Q ss_pred ecCCcEEEEEechhHHHHHHHHHHHhhCCCCceE
Q 015415 282 RPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEV 315 (407)
Q Consensus 282 ~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~V 315 (407)
..+..++|++.+.....+..++..|++.|+++.+
T Consensus 62 ~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~ 95 (110)
T cd01521 62 DKEKLFVVYCDGPGCNGATKAALKLAELGFPVKE 95 (110)
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHcCCeEEE
Confidence 3455677776544323566777888888886443
Done!