Query 015415
Match_columns 407
No_of_seqs 186 out of 1481
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 12:13:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015415.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015415hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ozl_B PDHE1-B, pyruvate dehyd 100.0 8.1E-69 2.8E-73 535.0 31.9 324 84-407 12-340 (341)
2 1w85_B Pyruvate dehydrogenase 100.0 4.5E-68 1.5E-72 526.3 31.9 321 86-407 2-323 (324)
3 1umd_B E1-beta, 2-OXO acid deh 100.0 3.5E-67 1.2E-71 519.9 31.4 319 86-406 3-322 (324)
4 1ik6_A Pyruvate dehydrogenase; 100.0 2E-66 7E-71 522.5 27.2 318 85-407 49-368 (369)
5 2bfd_B 2-oxoisovalerate dehydr 100.0 1.1E-64 3.9E-69 505.4 29.7 320 84-407 18-341 (342)
6 1qs0_B 2-oxoisovalerate dehydr 100.0 1.5E-63 5.2E-68 496.4 30.1 317 85-407 3-337 (338)
7 2o1x_A 1-deoxy-D-xylulose-5-ph 100.0 2.9E-56 1E-60 477.0 32.0 297 86-406 321-622 (629)
8 2o1s_A 1-deoxy-D-xylulose-5-ph 100.0 6.7E-56 2.3E-60 473.7 31.7 299 85-407 317-620 (621)
9 3mos_A Transketolase, TK; thia 100.0 7.1E-55 2.4E-59 464.5 27.9 297 84-404 310-616 (616)
10 3m49_A Transketolase; alpha-be 100.0 1.2E-50 4.1E-55 435.4 25.3 296 83-406 375-690 (690)
11 3l84_A Transketolase; TKT, str 100.0 4.4E-50 1.5E-54 427.6 27.6 285 84-404 335-631 (632)
12 3uk1_A Transketolase; structur 100.0 2.2E-50 7.5E-55 434.3 24.6 293 84-406 392-710 (711)
13 3rim_A Transketolase, TK; TPP, 100.0 4.9E-50 1.7E-54 430.6 24.7 295 84-407 372-699 (700)
14 2r8o_A Transketolase 1, TK 1; 100.0 1.5E-49 5E-54 427.5 24.2 294 83-406 351-663 (669)
15 3kom_A Transketolase; rossmann 100.0 1.5E-49 5.3E-54 425.7 24.1 295 83-406 351-663 (663)
16 1itz_A Transketolase; calvin c 100.0 6.1E-49 2.1E-53 422.9 26.4 293 83-405 362-675 (675)
17 2e6k_A Transketolase; structur 100.0 1.5E-49 5E-54 426.4 21.5 290 84-406 346-651 (651)
18 1gpu_A Transketolase; transfer 100.0 6.5E-49 2.2E-53 423.0 24.4 291 83-406 352-664 (680)
19 1r9j_A Transketolase; domains, 100.0 1E-48 3.6E-53 420.8 23.0 289 84-406 349-655 (673)
20 2jgd_A 2-oxoglutarate dehydrog 100.0 2.3E-45 7.8E-50 404.0 23.8 306 85-403 589-930 (933)
21 2yic_A 2-oxoglutarate decarbox 100.0 2E-45 6.7E-50 402.4 20.8 292 98-400 528-864 (868)
22 2xt6_A 2-oxoglutarate decarbox 100.0 1.1E-44 3.8E-49 405.1 21.5 280 96-385 771-1095(1113)
23 2qtc_A Pyruvate dehydrogenase 100.0 1.3E-41 4.6E-46 372.8 24.1 298 85-406 490-856 (886)
24 3ahc_A Phosphoketolase, xylulo 100.0 2.6E-37 9E-42 334.1 23.7 307 87-406 429-785 (845)
25 1yd7_A 2-keto acid:ferredoxin 100.0 3.7E-29 1.3E-33 253.6 9.3 283 87-407 23-395 (395)
26 2c42_A Pyruvate-ferredoxin oxi 99.9 1.5E-20 5.2E-25 212.9 25.2 220 129-361 49-349 (1231)
27 3ju3_A Probable 2-oxoacid ferr 99.7 1.4E-16 4.7E-21 134.9 10.3 106 282-406 11-116 (118)
28 1v5e_A Pyruvate oxidase; oxido 94.3 0.4 1.4E-05 50.2 13.1 152 87-259 4-165 (590)
29 2nxw_A Phenyl-3-pyruvate decar 94.2 0.71 2.4E-05 48.0 14.9 154 86-259 20-187 (565)
30 2wvg_A PDC, pyruvate decarboxy 93.8 1.4 4.6E-05 45.8 16.0 151 88-258 4-169 (568)
31 1ybh_A Acetolactate synthase, 93.7 0.39 1.3E-05 50.2 11.8 153 87-258 12-172 (590)
32 2vbi_A Pyruvate decarboxylase; 93.7 1.2 4.2E-05 46.1 15.4 152 87-258 3-169 (566)
33 2uz1_A Benzaldehyde lyase; thi 93.7 1 3.6E-05 46.6 14.9 150 87-258 4-164 (563)
34 1ozh_A ALS, acetolactate synth 93.4 0.52 1.8E-05 49.0 12.0 151 87-258 11-170 (566)
35 1q6z_A BFD, BFDC, benzoylforma 93.1 0.26 9E-06 50.7 9.1 114 134-258 39-161 (528)
36 3eya_A Pyruvate dehydrogenase 93.0 0.87 3E-05 47.1 13.0 152 88-258 4-162 (549)
37 1t9b_A Acetolactate synthase, 92.9 0.43 1.5E-05 50.9 10.7 151 91-254 464-632 (677)
38 1t9b_A Acetolactate synthase, 92.6 0.82 2.8E-05 48.8 12.2 150 87-257 82-241 (677)
39 2iht_A Carboxyethylarginine sy 92.5 0.92 3.2E-05 47.1 12.3 151 87-259 12-172 (573)
40 4feg_A Pyruvate oxidase; carba 92.2 0.93 3.2E-05 47.5 12.0 153 86-258 10-171 (603)
41 2c31_A Oxalyl-COA decarboxylas 91.7 0.57 2E-05 48.6 9.6 153 86-258 9-171 (568)
42 3hww_A 2-succinyl-5-enolpyruvy 91.6 1.6 5.6E-05 45.1 12.9 149 92-257 9-170 (556)
43 2q28_A Oxalyl-COA decarboxylas 91.5 0.92 3.1E-05 47.0 10.9 150 87-258 8-169 (564)
44 2pan_A Glyoxylate carboligase; 91.3 2.3 7.8E-05 44.5 13.8 152 87-257 27-187 (616)
45 2pgn_A Cyclohexane-1,2-dione h 91.0 1.1 3.8E-05 46.7 11.0 151 87-258 4-165 (589)
46 3lq1_A 2-succinyl-5-enolpyruvy 90.6 1 3.5E-05 46.9 10.3 148 93-257 13-177 (578)
47 2vk8_A Pyruvate decarboxylase 88.9 6.2 0.00021 40.7 14.5 152 87-259 4-171 (563)
48 1ovm_A Indole-3-pyruvate decar 88.7 3.4 0.00012 42.5 12.4 151 87-258 5-170 (552)
49 2vbf_A Branched-chain alpha-ke 87.9 4.2 0.00014 42.0 12.5 151 87-258 25-190 (570)
50 2x7j_A 2-succinyl-5-enolpyruvy 87.1 2.9 9.9E-05 43.7 10.7 150 88-258 32-198 (604)
51 3m49_A Transketolase; alpha-be 84.6 4.1 0.00014 43.6 10.4 98 146-254 145-268 (690)
52 1v5e_A Pyruvate oxidase; oxido 84.6 3.4 0.00012 43.0 9.7 111 133-254 403-534 (590)
53 3eya_A Pyruvate dehydrogenase 84.3 2.7 9.4E-05 43.3 8.8 112 133-254 396-524 (549)
54 4feg_A Pyruvate oxidase; carba 83.6 2.1 7.4E-05 44.7 7.6 112 133-254 410-541 (603)
55 3uk1_A Transketolase; structur 83.1 2.2 7.4E-05 45.9 7.5 98 146-254 160-282 (711)
56 2c31_A Oxalyl-COA decarboxylas 82.6 4.6 0.00016 41.7 9.7 112 133-254 416-542 (568)
57 1ozh_A ALS, acetolactate synth 81.4 2.8 9.6E-05 43.4 7.4 112 133-254 410-538 (566)
58 2pan_A Glyoxylate carboligase; 80.6 4.2 0.00014 42.5 8.6 112 133-254 432-575 (616)
59 3kom_A Transketolase; rossmann 80.3 5.8 0.0002 42.2 9.5 107 137-254 113-244 (663)
60 1ybh_A Acetolactate synthase, 80.3 6.3 0.00021 40.9 9.7 112 133-254 416-553 (590)
61 1q6z_A BFD, BFDC, benzoylforma 80.2 1.4 4.7E-05 45.3 4.6 112 133-254 392-520 (528)
62 3l84_A Transketolase; TKT, str 80.0 5.6 0.00019 42.1 9.3 98 146-254 119-237 (632)
63 2uz1_A Benzaldehyde lyase; thi 79.9 1.8 6.1E-05 44.8 5.4 111 133-254 409-541 (563)
64 1r9j_A Transketolase; domains, 79.5 8 0.00027 41.1 10.3 99 146-255 121-246 (673)
65 3hww_A 2-succinyl-5-enolpyruvy 79.2 3.1 0.0001 43.0 6.9 98 147-254 422-534 (556)
66 2e6k_A Transketolase; structur 79.2 8.6 0.0003 40.7 10.4 98 146-254 123-245 (651)
67 2o1s_A 1-deoxy-D-xylulose-5-ph 78.2 6.9 0.00024 41.1 9.3 25 230-254 255-279 (621)
68 2lqo_A Putative glutaredoxin R 77.0 4.5 0.00015 31.5 5.7 73 285-362 4-82 (92)
69 1gpu_A Transketolase; transfer 76.8 9 0.00031 40.8 9.8 99 145-254 120-245 (680)
70 2iht_A Carboxyethylarginine sy 76.2 2.7 9.1E-05 43.6 5.3 112 133-254 426-556 (573)
71 3lq1_A 2-succinyl-5-enolpyruvy 76.0 5.1 0.00017 41.5 7.5 98 146-254 441-555 (578)
72 2q28_A Oxalyl-COA decarboxylas 75.5 7.2 0.00025 40.1 8.4 112 133-254 411-539 (564)
73 1itz_A Transketolase; calvin c 74.6 14 0.00047 39.3 10.5 100 145-254 131-256 (675)
74 1ovm_A Indole-3-pyruvate decar 73.5 5 0.00017 41.2 6.6 112 133-254 398-527 (552)
75 2o1x_A 1-deoxy-D-xylulose-5-ph 71.8 10 0.00035 39.8 8.6 25 230-254 260-284 (629)
76 2x7j_A 2-succinyl-5-enolpyruvy 71.6 2.6 8.7E-05 44.1 3.8 99 145-253 459-574 (604)
77 3ipz_A Monothiol glutaredoxin- 70.4 8.1 0.00028 30.6 5.8 68 284-353 17-89 (109)
78 2vbi_A Pyruvate decarboxylase; 70.3 4.9 0.00017 41.5 5.6 112 133-254 399-528 (566)
79 3rim_A Transketolase, TK; TPP, 69.9 11 0.00036 40.5 8.2 86 160-255 170-265 (700)
80 3rpe_A MDAB, modulator of drug 69.2 17 0.00057 33.0 8.3 60 297-359 47-106 (218)
81 3fni_A Putative diflavin flavo 68.8 44 0.0015 28.1 10.6 53 292-346 15-67 (159)
82 2wvg_A PDC, pyruvate decarboxy 67.5 8.1 0.00028 39.9 6.6 112 133-254 403-536 (568)
83 2r8o_A Transketolase 1, TK 1; 67.4 18 0.00062 38.3 9.4 99 145-254 118-242 (669)
84 2pgn_A Cyclohexane-1,2-dione h 67.2 3.2 0.00011 43.2 3.5 112 133-254 414-542 (589)
85 2vzf_A NADH-dependent FMN redu 62.8 13 0.00045 32.4 6.2 67 293-360 16-93 (197)
86 2wci_A Glutaredoxin-4; redox-a 61.8 12 0.00041 31.2 5.4 66 285-352 35-105 (135)
87 3jx9_A Putative phosphoheptose 61.2 22 0.00074 31.0 7.2 121 233-359 23-154 (170)
88 3hly_A Flavodoxin-like domain; 61.1 72 0.0025 26.7 11.3 83 292-380 11-94 (161)
89 2nxw_A Phenyl-3-pyruvate decar 61.0 10 0.00035 39.1 5.9 145 91-253 377-536 (565)
90 3zyw_A Glutaredoxin-3; metal b 60.7 14 0.00048 29.4 5.5 67 284-352 15-86 (111)
91 4dik_A Flavoprotein; TM0755, e 59.6 25 0.00086 34.8 8.3 72 288-360 268-343 (410)
92 2q62_A ARSH; alpha/beta, flavo 59.5 13 0.00046 34.2 5.8 75 285-360 35-122 (247)
93 2vbf_A Branched-chain alpha-ke 59.0 20 0.00067 36.9 7.6 112 133-254 415-546 (570)
94 1aba_A Glutaredoxin; electron 58.8 19 0.00067 26.7 5.8 59 295-353 13-81 (87)
95 3mos_A Transketolase, TK; thia 58.5 17 0.00059 38.1 7.1 97 146-254 126-237 (616)
96 1w85_A Pyruvate dehydrogenase 57.4 22 0.00077 34.7 7.3 99 145-254 146-262 (368)
97 1sqs_A Conserved hypothetical 56.4 19 0.00064 32.5 6.2 68 293-361 15-104 (242)
98 2a5l_A Trp repressor binding p 56.3 19 0.00066 30.9 6.1 67 293-361 17-96 (200)
99 2wem_A Glutaredoxin-related pr 56.0 27 0.00093 28.2 6.5 64 284-353 19-92 (118)
100 1wik_A Thioredoxin-like protei 55.1 11 0.00039 29.5 4.0 67 284-352 14-85 (109)
101 3f2v_A General stress protein 54.8 26 0.0009 30.9 6.7 63 298-361 18-83 (192)
102 2amj_A Modulator of drug activ 54.7 24 0.00083 31.1 6.6 61 297-360 34-94 (204)
103 2fzv_A Putative arsenical resi 54.5 18 0.00061 34.1 5.8 75 285-360 59-147 (279)
104 2bfd_A 2-oxoisovalerate dehydr 54.2 25 0.00085 34.8 7.1 96 147-254 168-282 (400)
105 5nul_A Flavodoxin; electron tr 53.0 20 0.00069 28.9 5.4 48 292-346 9-56 (138)
106 2c42_A Pyruvate-ferredoxin oxi 52.8 62 0.0021 36.9 10.8 34 221-254 1031-1065(1231)
107 1t0i_A YLR011WP; FMN binding p 51.9 27 0.00093 29.9 6.3 68 293-361 14-109 (191)
108 2ozl_A PDHE1-A type I, pyruvat 50.5 24 0.00083 34.5 6.3 99 146-254 145-258 (365)
109 3f6r_A Flavodoxin; FMN binding 49.6 63 0.0022 26.2 8.0 80 292-378 12-95 (148)
110 1t1v_A SH3BGRL3, SH3 domain-bi 49.0 24 0.00084 26.6 4.9 69 286-358 3-80 (93)
111 3u7r_A NADPH-dependent FMN red 48.7 25 0.00086 30.9 5.6 63 296-359 18-90 (190)
112 1umd_A E1-alpha, 2-OXO acid de 48.5 30 0.001 33.7 6.6 105 138-254 142-264 (367)
113 2e85_A Hydrogenase 3 maturatio 48.3 43 0.0015 28.5 6.9 56 286-345 5-67 (159)
114 3gx1_A LIN1832 protein; APC633 48.0 1.1E+02 0.0039 24.9 11.4 109 286-405 6-122 (130)
115 3fvw_A Putative NAD(P)H-depend 47.8 42 0.0014 29.1 6.9 62 296-359 19-90 (192)
116 1ydg_A Trp repressor binding p 47.3 28 0.00095 30.4 5.7 75 286-361 8-103 (211)
117 1cfz_A Hydrogenase 2 maturatio 46.0 28 0.00096 29.8 5.3 56 286-345 2-64 (162)
118 2fz5_A Flavodoxin; alpha/beta 45.3 62 0.0021 25.6 7.2 60 293-360 11-72 (137)
119 3qhp_A Type 1 capsular polysac 45.1 1.2E+02 0.004 24.4 9.1 102 285-406 33-138 (166)
120 3l78_A Regulatory protein SPX; 44.8 32 0.0011 27.7 5.2 42 294-336 8-49 (120)
121 1rtt_A Conserved hypothetical 44.5 17 0.00058 31.5 3.7 63 297-361 24-97 (193)
122 1qs0_A 2-oxoisovalerate dehydr 44.5 52 0.0018 32.6 7.7 97 147-254 187-302 (407)
123 3kkj_A Amine oxidase, flavin-c 43.8 16 0.00055 31.2 3.4 31 285-318 3-33 (336)
124 3fz4_A Putative arsenate reduc 43.7 28 0.00096 28.2 4.7 43 294-337 11-53 (120)
125 2vk8_A Pyruvate decarboxylase 42.9 15 0.00052 37.7 3.6 112 133-253 403-536 (563)
126 3gkx_A Putative ARSC family re 42.5 27 0.00092 28.3 4.4 49 287-337 6-54 (120)
127 3hr4_A Nitric oxide synthase, 41.9 87 0.003 28.2 8.2 87 286-379 41-133 (219)
128 3rdw_A Putative arsenate reduc 39.9 30 0.001 28.0 4.3 49 287-337 7-55 (121)
129 3gdw_A Sigma-54 interaction do 39.8 1.6E+02 0.0055 24.3 10.5 106 286-402 6-121 (139)
130 3lyu_A Putative hydrogenase; t 39.2 31 0.0011 28.5 4.4 47 274-320 8-54 (142)
131 3gx8_A Monothiol glutaredoxin- 38.9 31 0.0011 27.8 4.3 64 284-353 15-90 (121)
132 3qmx_A Glutaredoxin A, glutare 38.8 43 0.0015 25.8 4.9 72 284-359 15-88 (99)
133 1rw1_A Conserved hypothetical 38.6 25 0.00086 28.0 3.6 49 287-337 2-50 (114)
134 3rhb_A ATGRXC5, glutaredoxin-C 38.0 58 0.002 25.2 5.7 66 285-353 19-89 (113)
135 3rg8_A Phosphoribosylaminoimid 37.5 2E+02 0.0067 24.7 10.2 70 286-358 4-79 (159)
136 1xmp_A PURE, phosphoribosylami 37.2 1.5E+02 0.005 25.8 8.4 69 285-356 12-85 (170)
137 3nbm_A PTS system, lactose-spe 36.3 90 0.0031 24.8 6.6 96 286-407 8-108 (108)
138 2ab1_A Hypothetical protein; H 35.8 9.2 0.00032 31.5 0.5 37 281-317 58-96 (122)
139 1s3c_A Arsenate reductase; ARS 35.8 28 0.00095 29.1 3.5 48 287-336 4-51 (141)
140 1id1_A Putative potassium chan 35.3 82 0.0028 25.7 6.5 32 285-319 4-35 (153)
141 3kuu_A Phosphoribosylaminoimid 35.0 2E+02 0.0068 25.1 8.9 71 285-358 13-88 (174)
142 4hs4_A Chromate reductase; tri 34.7 49 0.0017 29.0 5.2 61 297-359 24-96 (199)
143 3trh_A Phosphoribosylaminoimid 34.5 2E+02 0.0067 25.0 8.8 71 285-358 7-82 (169)
144 2zki_A 199AA long hypothetical 34.4 51 0.0017 28.2 5.2 68 292-361 14-95 (199)
145 4bby_A Alkyldihydroxyacetoneph 34.3 1.7E+02 0.0058 30.6 10.1 84 219-304 201-292 (658)
146 3lp6_A Phosphoribosylaminoimid 34.2 2.3E+02 0.008 24.6 9.5 71 285-358 8-83 (174)
147 1z3e_A Regulatory protein SPX; 34.2 68 0.0023 26.1 5.7 48 287-336 3-50 (132)
148 3hh1_A Tetrapyrrole methylase 34.0 18 0.00063 29.0 2.0 35 282-316 77-114 (117)
149 2ark_A Flavodoxin; FMN, struct 33.3 59 0.002 27.8 5.4 60 293-360 16-76 (188)
150 2qtc_A Pyruvate dehydrogenase 33.2 1.8E+02 0.0063 31.8 10.3 22 233-254 365-387 (886)
151 3tem_A Ribosyldihydronicotinam 32.1 58 0.002 29.3 5.3 65 295-360 17-116 (228)
152 2ohh_A Type A flavoprotein FPR 32.1 56 0.0019 31.3 5.6 68 288-359 259-330 (404)
153 3b6i_A Flavoprotein WRBA; flav 32.1 65 0.0022 27.4 5.5 66 293-360 13-92 (198)
154 3l4e_A Uncharacterized peptida 32.0 50 0.0017 29.3 4.8 55 284-341 27-85 (206)
155 3f0i_A Arsenate reductase; str 31.7 26 0.0009 28.3 2.6 43 294-337 12-54 (119)
156 1t5b_A Acyl carrier protein ph 31.7 88 0.003 26.5 6.3 67 294-361 17-111 (201)
157 3q2o_A Phosphoribosylaminoimid 31.6 1.1E+02 0.0036 29.4 7.5 61 282-346 12-85 (389)
158 2kok_A Arsenate reductase; bru 31.2 39 0.0013 27.1 3.6 49 287-337 7-55 (120)
159 2ct6_A SH3 domain-binding glut 31.1 64 0.0022 25.3 4.9 65 286-353 9-88 (111)
160 3ors_A N5-carboxyaminoimidazol 30.6 2.6E+02 0.0089 24.0 9.6 71 285-358 4-79 (163)
161 3llv_A Exopolyphosphatase-rela 30.4 1E+02 0.0036 24.5 6.3 32 284-318 6-37 (141)
162 1o4v_A Phosphoribosylaminoimid 30.4 2.6E+02 0.0088 24.6 8.9 71 285-358 14-89 (183)
163 1f4p_A Flavodoxin; electron tr 30.3 50 0.0017 26.7 4.3 79 293-378 12-94 (147)
164 3h8q_A Thioredoxin reductase 3 30.3 1.6E+02 0.0053 22.9 7.1 66 284-353 16-86 (114)
165 3pu6_A Uncharacterized protein 30.0 97 0.0033 26.2 6.1 56 286-345 4-65 (157)
166 2hpv_A FMN-dependent NADH-azor 29.6 83 0.0028 27.1 5.8 66 295-361 19-119 (208)
167 2jgd_A 2-oxoglutarate dehydrog 29.5 1.1E+02 0.0039 33.6 7.9 105 137-254 318-451 (933)
168 2yan_A Glutaredoxin-3; oxidore 29.2 84 0.0029 24.0 5.2 67 285-353 17-88 (105)
169 3ic4_A Glutaredoxin (GRX-1); s 29.2 71 0.0024 23.4 4.6 67 285-353 12-83 (92)
170 2fvt_A Conserved hypothetical 29.1 15 0.0005 30.9 0.6 36 283-318 66-102 (135)
171 1ycg_A Nitric oxide reductase; 28.8 63 0.0021 30.9 5.3 57 287-346 253-313 (398)
172 3fwz_A Inner membrane protein 28.5 54 0.0019 26.5 4.1 32 285-319 8-39 (140)
173 2fi9_A Outer membrane protein; 28.2 14 0.00049 30.6 0.4 36 283-318 67-103 (128)
174 3l9w_A Glutathione-regulated p 27.3 85 0.0029 30.9 6.0 59 284-345 4-78 (413)
175 2m1z_A LMO0427 protein; homolo 26.6 2.2E+02 0.0077 22.6 7.3 92 287-407 6-104 (106)
176 3nzn_A Glutaredoxin; structura 26.6 80 0.0027 24.0 4.6 68 285-353 22-94 (103)
177 2x5n_A SPRPN10, 26S proteasome 26.5 1E+02 0.0035 26.8 5.8 49 296-346 121-174 (192)
178 3r6w_A FMN-dependent NADH-azor 26.4 1.4E+02 0.0049 25.8 6.9 65 295-360 18-111 (212)
179 2q9u_A A-type flavoprotein; fl 26.0 1.2E+02 0.004 29.2 6.8 64 293-360 268-331 (414)
180 3okp_A GDP-mannose-dependent a 26.0 1.7E+02 0.0058 27.0 7.8 39 321-360 258-301 (394)
181 3lcm_A SMU.1420, putative oxid 25.9 1.2E+02 0.004 26.3 6.1 63 296-360 17-97 (196)
182 1e5d_A Rubredoxin\:oxygen oxid 25.3 1.3E+02 0.0046 28.5 7.0 69 288-360 255-327 (402)
183 3orq_A N5-carboxyaminoimidazol 25.0 1.1E+02 0.0038 29.3 6.3 59 282-344 10-81 (377)
184 3lrx_A Putative hydrogenase; a 24.8 60 0.0021 27.2 3.8 39 283-321 22-60 (158)
185 2ywx_A Phosphoribosylaminoimid 24.8 2.7E+02 0.0091 23.8 7.8 60 294-356 10-70 (157)
186 2h31_A Multifunctional protein 24.6 4.8E+02 0.016 25.9 10.8 71 285-358 266-342 (425)
187 3oow_A Phosphoribosylaminoimid 23.6 3.4E+02 0.012 23.4 8.3 70 286-358 7-81 (166)
188 4gi5_A Quinone reductase; prot 23.1 1.2E+02 0.0042 28.3 5.9 65 296-361 39-137 (280)
189 1v95_A Nuclear receptor coacti 22.9 2E+02 0.0068 23.7 6.5 60 285-345 9-70 (130)
190 3qe2_A CPR, P450R, NADPH--cyto 22.7 1.3E+02 0.0045 31.3 6.7 92 284-379 18-117 (618)
191 3svl_A Protein YIEF; E. coli C 22.7 45 0.0015 29.1 2.6 64 295-359 19-95 (193)
192 1ijb_A VON willebrand factor; 22.3 1E+02 0.0034 26.5 4.9 61 298-360 134-196 (202)
193 3cpk_A Uncharacterized protein 22.2 23 0.0008 30.3 0.6 34 284-317 88-122 (150)
194 3klb_A Putative flavoprotein; 22.2 1E+02 0.0034 25.8 4.8 84 289-376 8-116 (162)
195 4grd_A N5-CAIR mutase, phospho 21.9 3.9E+02 0.013 23.2 9.5 71 285-358 13-88 (173)
196 1ykg_A SIR-FP, sulfite reducta 21.9 1.1E+02 0.0037 25.6 4.9 58 289-353 13-74 (167)
197 2aef_A Calcium-gated potassium 21.8 65 0.0022 28.4 3.6 55 284-342 9-78 (234)
198 1d4a_A DT-diaphorase, quinone 21.4 1.4E+02 0.0047 27.4 5.9 66 295-361 18-118 (273)
199 2wul_A Glutaredoxin related pr 21.2 1.2E+02 0.004 24.5 4.7 62 285-352 20-91 (118)
200 2xvy_A Chelatase, putative; me 21.1 2.9E+02 0.0098 24.9 8.1 74 285-358 10-101 (269)
201 4ici_A Putative flavoprotein; 20.9 1.3E+02 0.0043 25.5 5.2 85 289-377 17-126 (171)
202 3k1y_A Oxidoreductase; structu 20.9 1.2E+02 0.0042 26.3 5.2 55 305-360 41-109 (191)
203 3g8r_A Probable spore coat pol 20.7 3.3E+02 0.011 26.3 8.6 63 284-347 135-204 (350)
204 3oz2_A Digeranylgeranylglycero 20.5 64 0.0022 30.1 3.4 31 285-318 5-35 (397)
205 2gm2_A Conserved hypothetical 20.2 20 0.00068 29.9 -0.3 38 281-318 61-99 (132)
206 3od1_A ATP phosphoribosyltrans 20.2 2.2E+02 0.0074 27.8 7.4 59 285-349 337-396 (400)
207 3le1_A Phosphotransferase syst 20.1 1.2E+02 0.004 23.1 4.3 31 281-311 55-85 (88)
No 1
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=100.00 E-value=8.1e-69 Score=534.98 Aligned_cols=324 Identities=38% Similarity=0.683 Sum_probs=301.3
Q ss_pred cccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEE
Q 015415 84 GHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVE 163 (407)
Q Consensus 84 ~~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~ 163 (407)
.+++++|++++++|.+++++|++|+++++|++.++|+|..+++|.++|||+||||+||+|++|+++|+|+|++|+|||++
T Consensus 12 ~~~~~~~~a~~~~L~~l~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rp~~~ 91 (341)
T 2ozl_B 12 SLQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICE 91 (341)
T ss_dssp CCEEEHHHHHHHHHHHHHHHCTTEEEEETTSSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEE
T ss_pred cccccHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEE
Confidence 44688999999999999999999999999999877878778999999999999999999999999999999999999999
Q ss_pred ecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCCcCccchHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 015415 164 GMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKA 243 (407)
Q Consensus 164 t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G~tHsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~ 243 (407)
++|++|++|++|||++++|+++||+||+.++||+++++.|..+++|+||||++|++|+++|||+|++|+|++|+++++++
T Consensus 92 ~~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~G~~g~~G~tHs~~~ea~l~~iP~l~V~~Psd~~e~~~~l~~ 171 (341)
T 2ozl_B 92 FMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKS 171 (341)
T ss_dssp CSSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEECSCCSSCCGGGCCCCHHHHHTSTTCEEECCCSHHHHHHHHHH
T ss_pred eccHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcCcCCCCCCcchhhHHHHHhccCCCCEEEEeCCHHHHHHHHHH
Confidence 66889999999999999999999999999999999998777788999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEeeccccccCCCCC----CCccccccCCceEEeecCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEec
Q 015415 244 AIRSENPVILFEHVLLYNLKERI----PDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIR 319 (407)
Q Consensus 244 a~~~~~Pv~ir~~r~~y~~~~~v----~~~~~~~~~Gk~~vl~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~ 319 (407)
|+++++|++||++|.+|.....+ +++++.+++|+++++++|.|++||++|+++..|++|++.|+++|++++|||++
T Consensus 172 a~~~~~Pv~i~~~~~~~~~~~~v~p~~~~~~~~~~~Gk~~v~~~g~dv~iia~Gs~~~~a~~Aa~~L~~~Gi~v~vv~~~ 251 (341)
T 2ozl_B 172 AIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMR 251 (341)
T ss_dssp HHHSSSCEEEEECHHHHTCEEECCHHHHSTTCCCCTTCCEEEECCSSEEEEECSTHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred HHhcCCCEEEEEChhhhcCCCCcCCccCCccccccCCceEEeccCCCEEEEEeCHHHHHHHHHHHHHHhcCCCeEEEeee
Confidence 99999999999998876533223 44566788999999999999999999999999999999999999999999999
Q ss_pred ccccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHh-ccccCCCCCeEEeecCCCCCCCHHHHHHHcCCCHHHH
Q 015415 320 SLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITE-NFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQI 398 (407)
Q Consensus 320 ~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e-~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~gl~~~~I 398 (407)
+++|||++.|.++++++++|++|||+...||||++|++++.+ +++..++.|+.++|++|.|++++..+++++|+|+++|
T Consensus 252 ~l~P~d~~~i~~~~~~~~~vv~vEe~~~~Gg~g~~v~~~l~~~~~~~~l~~~v~~ig~~d~~~~~g~~l~~~~g~~~~~I 331 (341)
T 2ozl_B 252 TIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDI 331 (341)
T ss_dssp EEETCCHHHHHHHHHHHSCEEEECSSCSTTCHHHHHHHHHHHSTTGGGCSSCCEEECCCSSCCCSSHHHHHTTSCCHHHH
T ss_pred eecCCCHHHHHHHHhcCCeEEEEecCcccCcHHHHHHHHHHhhhcccccCCCEEEEecCCcCCCCcHHHHHHhCcCHHHH
Confidence 999999999999999999999999999889999999999998 7655567899999999999999888999999999999
Q ss_pred HHHHHHHhC
Q 015415 399 VTAVEQLCQ 407 (407)
Q Consensus 399 ~~~i~~ll~ 407 (407)
+++|+++++
T Consensus 332 ~~~i~~~l~ 340 (341)
T 2ozl_B 332 IFAIKKTLN 340 (341)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999999874
No 2
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=100.00 E-value=4.5e-68 Score=526.29 Aligned_cols=321 Identities=35% Similarity=0.649 Sum_probs=298.3
Q ss_pred cchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEEec
Q 015415 86 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGM 165 (407)
Q Consensus 86 ~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~ 165 (407)
+++||++|+++|.+++++|++|+++++|++.++|+|+.+++|.++|||+||||+||+|++|+++|+|+|++|+|||++++
T Consensus 2 ~~~~~~a~~~~L~~l~~~~~~vv~~~~d~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~rp~~~~t 81 (324)
T 1w85_B 2 QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQ 81 (324)
T ss_dssp EECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEBCS
T ss_pred cchHHHHHHHHHHHHHhHCcCEEEEcCcccccCCcchhHHHHHHHhCCCcEEEcchhHHHHHHHHHHHHhCCCEEEEEec
Confidence 46799999999999999999999999999988999988899999999999999999999999999999999999999866
Q ss_pred chhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCCcCccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHH
Q 015415 166 NMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAI 245 (407)
Q Consensus 166 ~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G~tHsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~ 245 (407)
++.|++|++|||++++|+++||+||++++|+|++.+.|..+.+|++|+|..+++++++|||+|++|+|++|+++++++|+
T Consensus 82 ~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~g~~~~~g~~hs~~~~a~~~~iP~l~V~~Psd~~e~~~~l~~a~ 161 (324)
T 1w85_B 82 FFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGGVHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAI 161 (324)
T ss_dssp SGGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEEECSSSCCCTTSSCCCHHHHTTSTTCEEECCSSHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEeccCCCCCCCcccccHHHHHccCCCCEEEeeCCHHHHHHHHHHHH
Confidence 88899999999999999999999999999999998656667788899887779999999999999999999999999999
Q ss_pred hcCCCEEEeeccccccC-CCCCCCccccccCCceEEeecCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccC
Q 015415 246 RSENPVILFEHVLLYNL-KERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPF 324 (407)
Q Consensus 246 ~~~~Pv~ir~~r~~y~~-~~~v~~~~~~~~~Gk~~vl~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pf 324 (407)
++++|++||+++.+++. .+.++++++.+++||++++++|+|++||+||++++.|++|++.|+++|++++|||+++|+||
T Consensus 162 ~~~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~ 241 (324)
T 1w85_B 162 RDNDPVIFLEHLKLYRSFRQEVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTVQPL 241 (324)
T ss_dssp HSSSCEEEEEETTTSSSCCEECCSSCCCCCTTCCEEEECCSSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSEEESC
T ss_pred HcCCCEEEEechHhcCCCCCCCCCccccccCCceEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEeeeecCC
Confidence 99999999999887653 34456566778899999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCHHHHHHHcCCCHHHHHHHHHH
Q 015415 325 DLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQ 404 (407)
Q Consensus 325 d~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~ 404 (407)
|++.|.++++++++++++||+...||||++|++++.++++..++.|+.++|++|.|++++. |++++|+|+++|+++|++
T Consensus 242 d~~~i~~~~~~~~~vvvvEe~~~~Gg~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~~-l~~~~gl~~~~I~~~i~~ 320 (324)
T 1w85_B 242 DIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVYPFAQ-AESVWLPNFKDVIETAKK 320 (324)
T ss_dssp CHHHHHHHHHHHSCEEEEEEEETTSSSHHHHHHHHHHHHGGGCSSCCEEEEECSSSSCCGG-GHHHHSCCHHHHHHHHHH
T ss_pred CHHHHHHHHhhCCcEEEEeCCCcCChHHHHHHHHHHhhCccccCCCeEEEecCCcCCCcHH-HHHHhCcCHHHHHHHHHH
Confidence 9999999999999999999999889999999999998765445688999999999999988 999999999999999999
Q ss_pred HhC
Q 015415 405 LCQ 407 (407)
Q Consensus 405 ll~ 407 (407)
++.
T Consensus 321 ~l~ 323 (324)
T 1w85_B 321 VMN 323 (324)
T ss_dssp HHT
T ss_pred Hhh
Confidence 874
No 3
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=100.00 E-value=3.5e-67 Score=519.87 Aligned_cols=319 Identities=40% Similarity=0.678 Sum_probs=296.6
Q ss_pred cchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEEec
Q 015415 86 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGM 165 (407)
Q Consensus 86 ~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~ 165 (407)
+++||++++++|.+++++|++|+++++|++.++|+|+.+++|.++|||+||||+||+|++|+++|+|+|++|+|||++++
T Consensus 3 ~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~~p~~~~t 82 (324)
T 1umd_B 3 LMTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQ 82 (324)
T ss_dssp EECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEECS
T ss_pred CCcHHHHHHHHHHHHHhcCCCEEEECCcccccCCcchhhHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEec
Confidence 57899999999999999999999999999988898888899999999999999999999999999999999999999866
Q ss_pred chhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCCcCccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHH
Q 015415 166 NMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAI 245 (407)
Q Consensus 166 ~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G~tHsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~ 245 (407)
++.|++|++|||++++|+++||+||+.++|+|++.+.|..+.+|++|+|.++++|+++|||+|++|+|++|+++++++|+
T Consensus 83 ~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~g~~~~~g~~hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~ 162 (324)
T 1umd_B 83 FADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGGVRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAI 162 (324)
T ss_dssp SGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEEECSSSSCGGGSSCCCHHHHHTSTTCEEEECCSHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEcCCCCCCCCCccchhHHHHHhcCCCCEEEEeCCHHHHHHHHHHHH
Confidence 88889999999999999999999999999999998656566778899886679999999999999999999999999999
Q ss_pred hcCCCEEEeeccccccC-CCCCCCccccccCCceEEeecCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccC
Q 015415 246 RSENPVILFEHVLLYNL-KERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPF 324 (407)
Q Consensus 246 ~~~~Pv~ir~~r~~y~~-~~~v~~~~~~~~~Gk~~vl~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pf 324 (407)
++++|++||+++.+++. .+.++++++.+++||++++++|.|++||++|++++.|++|++.|+++|++++|||+++|+||
T Consensus 163 ~~~~Pv~i~~p~~l~~~~~~~~~~~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~ 242 (324)
T 1umd_B 163 RDEDPVVFLEPKRLYRSVKEEVPEEDYTLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLRTLMPW 242 (324)
T ss_dssp HCSSCEEEEEEGGGSSSCCEECCSSCCCCCTTCCEEEECCSSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECCEEETC
T ss_pred hcCCCEEEEechHhcCCCCCCcCCCCccccCCcceEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEeceecCC
Confidence 99999999999887754 34556666778899999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCHHHHHHHcCCCHHHHHHHHHH
Q 015415 325 DLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQ 404 (407)
Q Consensus 325 d~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~ 404 (407)
|++.|.++++++++++++||+...||||++|++++.++++..++.|+.++|++|.|++++ |++++|+|+++|+++|++
T Consensus 243 d~~~i~~~~~~~~~vv~vEe~~~~gG~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~--l~~~~g~~~~~I~~~i~~ 320 (324)
T 1umd_B 243 DYEAVMNSVAKTGRVVLVSDAPRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYA--QDKLYLPTVTRILNAAKR 320 (324)
T ss_dssp CHHHHHHHHHHHSCEEEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCST--THHHHSCCHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCeEEEEecCCcCCCHHHHHHHHHHHhCccccCCCeEEEeCCCCCCCHH--HHHHhCcCHHHHHHHHHH
Confidence 999999999999999999999989999999999999876544568899999999999998 999999999999999999
Q ss_pred Hh
Q 015415 405 LC 406 (407)
Q Consensus 405 ll 406 (407)
++
T Consensus 321 ~l 322 (324)
T 1umd_B 321 AL 322 (324)
T ss_dssp HH
T ss_pred Hh
Confidence 86
No 4
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=100.00 E-value=2e-66 Score=522.51 Aligned_cols=318 Identities=37% Similarity=0.659 Sum_probs=256.7
Q ss_pred ccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEEe
Q 015415 85 HELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEG 164 (407)
Q Consensus 85 ~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t 164 (407)
.+++||++++++|.+++++|++|+++++|++.++|+|+.+++|.++|||+||||+||+|++|+++|+|||++|+|||+++
T Consensus 49 ~~~~~~~a~~~aL~~l~~~d~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rpv~~~ 128 (369)
T 1ik6_A 49 MMANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTPLNEGGILGFAMGMAMAGLKPVAEI 128 (369)
T ss_dssp EEECHHHHHHHHHHHHHHHCTTEEEEEC---------CTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CcccHHHHHHHHHHHHHccCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEECcccHHHHHHHHHHHHHCCCeeEEEe
Confidence 46789999999999999999999999999998888888889999999999999999999999999999999999999996
Q ss_pred cchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec-CCCCCCCCcCccchHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 015415 165 MNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKA 243 (407)
Q Consensus 165 ~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~~~~~G~tHsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~ 243 (407)
+|+.|++|++|||++++|+++||+||++++||+++.+ +|.. ++|++|++.++++|+++|||+|++|+|++|+++++++
T Consensus 129 tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~~-g~g~~hs~~~~a~l~~iPnl~V~~Psd~~e~~~ll~~ 207 (369)
T 1ik6_A 129 QFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGT-RGGLYHSNSPEAIFVHTPGLVVVMPSTPYNAKGLLKA 207 (369)
T ss_dssp CCC----CCHHHHHHHHHHHHC------CCCCEEEEEECC------------HHHHHHTCTTCEEECCCSHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCCC-CCCccccccHHHHHcCCCCcEEEecCCHHHHHHHHHH
Confidence 5888999999999999999999999999999999986 4434 4888998888899999999999999999999999999
Q ss_pred HHhcCCCEEEeeccccccC-CCCCCCccccccCCceEEeecCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccc
Q 015415 244 AIRSENPVILFEHVLLYNL-KERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLK 322 (407)
Q Consensus 244 a~~~~~Pv~ir~~r~~y~~-~~~v~~~~~~~~~Gk~~vl~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~ 322 (407)
|++.++|++||+++.+++. .+.++++++.+++|+++++++|.|++||++|.++..|++|++.|+ | +++|||++||+
T Consensus 208 A~~~~~Pv~i~~p~~l~r~~~~~v~~~~~~~~~G~~~v~~~g~dv~Iia~G~~v~~a~~Aa~~L~--G-~v~Vi~~~~l~ 284 (369)
T 1ik6_A 208 AIRGDDPVVFLEPKILYRAPREEVPEGDYVVEIGKARVAREGDDVTLVTYGAVVHKALEAAERVK--A-SVEVVDLQTLN 284 (369)
T ss_dssp HHHSSSCEEEEEEGGGSSCCCEEEECSSCCCCTTCCEEEECCSSEEEEECTTHHHHHHHHHHTSS--S-CEEEEECCEEE
T ss_pred HHhCCCCEEEEEehhhhccCCCCcCCCcccccCCceEEEEcCCCEEEEEeCHHHHHHHHHHHHhC--C-CeEEEeeeecC
Confidence 9999999999999988754 344555567788999999999999999999999999999999997 8 99999999999
Q ss_pred cCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCHHHHHHHcCCCHHHHHHHH
Q 015415 323 PFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAV 402 (407)
Q Consensus 323 Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i 402 (407)
|||++.|.++++++++++++||+...||||++|++++.++++..++.|+.++|++|.|++++. |++++|+|+++|+++|
T Consensus 285 P~d~~~i~~~~~~~~~vvvvEe~~~~GG~g~~v~~~l~~~~~~~l~~pv~~vg~~d~~~~~~~-l~~~~gl~~~~I~~~i 363 (369)
T 1ik6_A 285 PLDFDTVLKSVSKTGRLIIAHDSPKTGGLGAEVRALVAEKALDRLTAPVIRLAGPDVPQSPIA-ADAAYAPTVERIIKAI 363 (369)
T ss_dssp TTCHHHHHHHHHHHCCEEEEEEEESTTSHHHHHHHHHHHHSGGGCSSCCEEEEECCCC-------------CHHHHHHHH
T ss_pred CCCHHHHHHHHhccCeEEEEecCCcCCcHHHHHHHHHHhhCccccCCCeEEEcCCCcCCCCHH-HHHHhCcCHHHHHHHH
Confidence 999999999999999999999999899999999999998876556689999999999999988 9999999999999999
Q ss_pred HHHhC
Q 015415 403 EQLCQ 407 (407)
Q Consensus 403 ~~ll~ 407 (407)
+++++
T Consensus 364 ~~~l~ 368 (369)
T 1ik6_A 364 EYVMR 368 (369)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 99874
No 5
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=100.00 E-value=1.1e-64 Score=505.36 Aligned_cols=320 Identities=34% Similarity=0.595 Sum_probs=291.0
Q ss_pred cccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEE
Q 015415 84 GHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVE 163 (407)
Q Consensus 84 ~~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~ 163 (407)
.++++||++++++|.+++++|++|+++++|++ ++|+|+.+++|+++|||+||||+||+|++|+++|+|+|++|+|||++
T Consensus 18 ~~~~~~~~a~~~aL~~l~~~~~~vv~~~~D~~-~~gt~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~rp~~~ 96 (342)
T 2bfd_B 18 TQKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAE 96 (342)
T ss_dssp EEEECHHHHHHHHHHHHHHHCTTCEEEETTTT-TTCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCccHHHHHHHHHHHHHhcCCCEEEEcCccC-CCcccchHHHHHHHhCCCeEEEcCcCHHHHHHHHHHHHHCCCeeEEE
Confidence 45688999999999999999999999999998 67888888999999999999999999999999999999999999998
Q ss_pred ecchhHHHHHHHHHHHhhhhhchhcCCcccc-cEEEEecCCCCCCCCcCcc-chHHHHHccCCCcEEEeeCCHHHHHHHH
Q 015415 164 GMNMGFLLLAFNQISNNCGMLHYTSGGQFTI-PIVIRGPGGVGRQLGAEHS-QRLESYFQSIPGIQMVACSTPYNAKGLM 241 (407)
Q Consensus 164 t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~l-pvvi~~~~G~~~~~G~tHs-q~~ea~~~~iPgl~V~~P~d~~e~~~~~ 241 (407)
++++.|++|++|||++++|+++||+||++++ ||+++.+.|. +.+|+||| |..+++|+++|||+|++|+|++|+++++
T Consensus 97 ~tf~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g-~~~G~th~~~~d~~~l~~iP~l~V~~Psd~~e~~~~l 175 (342)
T 2bfd_B 97 IQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGC-VGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLL 175 (342)
T ss_dssp CSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESC-CSSCGGGSSCCCHHHHHTSTTCEEECCSSHHHHHHHH
T ss_pred ecchhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCC-CCCCcchhhHhHHHHHhcCCCcEEEeeCCHHHHHHHH
Confidence 6688899999999999999999999999999 9999986432 35788884 4445999999999999999999999999
Q ss_pred HHHHhcCCCEEEeeccccccC-CCCCCCccccccCCceEEeecCCcEEEEEechhHHHHHHHHHHHhhC-CCCceEEEec
Q 015415 242 KAAIRSENPVILFEHVLLYNL-KERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNK-GYDPEVIDIR 319 (407)
Q Consensus 242 ~~a~~~~~Pv~ir~~r~~y~~-~~~v~~~~~~~~~Gk~~vl~eG~dv~Iia~G~~~~~al~Aa~~L~~~-Gi~v~VI~~~ 319 (407)
++|+++++|++||+++.+++. .+.++.+++.+++|+++++++|.|++||++|++++.|++|+++|+++ |++++|||++
T Consensus 176 ~~a~~~~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~G~~~v~~~g~dv~iia~G~~~~~a~~Aa~~L~~~~Gi~v~vi~~~ 255 (342)
T 2bfd_B 176 LSCIEDKNPCIFFEPKILYRAAAEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLR 255 (342)
T ss_dssp HHHHHSSSCEEEEEEGGGTTSCCEEEESSCCCCCSSCCEEEECCSSEEEEECTTHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_pred HHHHhcCCcEEEEecchhcCCCCCCCCCcccceeCCceEEeccCCCEEEEEECHHHHHHHHHHHHHHhhcCCCEEEEeee
Confidence 999999999999999776653 23444456778899999999999999999999999999999999999 9999999999
Q ss_pred ccccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCHHHHHHHcCCCHHHHH
Q 015415 320 SLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIV 399 (407)
Q Consensus 320 ~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~gl~~~~I~ 399 (407)
+|+|||++.|.++++++++++++||+...||||++|++++.++++..+..|+.++|++|.|+|++ |++++|+|+++|+
T Consensus 256 ~l~P~d~~~i~~~~~~~~~vv~vEe~~~~gg~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~--l~~~~gl~~~~I~ 333 (342)
T 2bfd_B 256 TIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPHI--FEPFYIPDKWKCY 333 (342)
T ss_dssp EEESCCHHHHHHHHHHHSCEEEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCST--THHHHSCCHHHHH
T ss_pred ecCCCCHHHHHHHHhcCCEEEEEEeCccCCcHHHHHHHHHHhhCccccCCCeEEEecCCCCChHH--HHHHHCcCHHHHH
Confidence 99999999999999999999999999889999999999998876544567899999999999887 9999999999999
Q ss_pred HHHHHHhC
Q 015415 400 TAVEQLCQ 407 (407)
Q Consensus 400 ~~i~~ll~ 407 (407)
++|++++.
T Consensus 334 ~~i~~~l~ 341 (342)
T 2bfd_B 334 DALRKMIN 341 (342)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99999874
No 6
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=100.00 E-value=1.5e-63 Score=496.42 Aligned_cols=317 Identities=38% Similarity=0.632 Sum_probs=287.0
Q ss_pred ccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEEe
Q 015415 85 HELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEG 164 (407)
Q Consensus 85 ~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t 164 (407)
++++||++++++|.+++++|++|+++++|++.++|+|+.+++|+++|||+||||+||+|++|+++|+|+|++|+|||+++
T Consensus 3 ~~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gisE~~~~~~a~G~A~~G~rp~~~~ 82 (338)
T 1qs0_B 3 TTMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVEI 82 (338)
T ss_dssp EECCHHHHHHHHHHHHHHHCTTEEEEETTCSSSCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred CcchHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEEccccHHHHHHHHHHHHhCCCEEEEEe
Confidence 35789999999999999999999999999998889888889999999999999999999999999999999999999986
Q ss_pred cchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCCcCcc-chHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 015415 165 MNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHS-QRLESYFQSIPGIQMVACSTPYNAKGLMKA 243 (407)
Q Consensus 165 ~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G~tHs-q~~ea~~~~iPgl~V~~P~d~~e~~~~~~~ 243 (407)
+++.|++|++|||++++|+++||+||+.++||+++++.|. +.+|++|| |..+++|+++|||+|++|+|++|+++++++
T Consensus 83 t~~~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g-~~~G~th~s~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~ 161 (338)
T 1qs0_B 83 QFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG-GIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIA 161 (338)
T ss_dssp SCGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC-SSSCCSSSSCCCHHHHTTSTTCEEECCCSHHHHHHHHHH
T ss_pred ccHhHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC-CCCCcccccccHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 6888999999999999999999999999999999986443 57788873 454599999999999999999999999999
Q ss_pred HHhcCCCEEEeeccccccC-CC----------------CCCCccccccCCceEEeecCCcEEEEEechhHHHHHHHHHHH
Q 015415 244 AIRSENPVILFEHVLLYNL-KE----------------RIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTL 306 (407)
Q Consensus 244 a~~~~~Pv~ir~~r~~y~~-~~----------------~v~~~~~~~~~Gk~~vl~eG~dv~Iia~G~~~~~al~Aa~~L 306 (407)
|+++++|++||+++.+++. .+ .++++++.+++|+++++++|.|++||++|++++.|++|++.
T Consensus 162 A~~~~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~- 240 (338)
T 1qs0_B 162 SIECDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPDGYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAAEE- 240 (338)
T ss_dssp HHHSSSCEEEEEEGGGSSSCCCSCSSSCCCCSTTSTTCEEESSCCCCCTTCCCEEECCSSCEEEECTTHHHHHHHHHHH-
T ss_pred HHhcCCcEEEEEchHhhcCcccccccCccchhhcccccccCCCCcccccCceeEecCCCCEEEEEeCHHHHHHHHHHHH-
Confidence 9999999999998666543 22 23344566789999999999999999999999999999997
Q ss_pred hhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCHHH
Q 015415 307 VNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGT 386 (407)
Q Consensus 307 ~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~~~ 386 (407)
+|++++|||+++++|||++.|.+++++++++++|||+...||||++|++++.++++..++.|+.++|++|.|+|++
T Consensus 241 --~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~gG~g~~V~~~l~~~~~~~l~~~v~~ig~~d~~~~~~-- 316 (338)
T 1qs0_B 241 --SGVDAEVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGFGAELVSLVQEHCFHHLEAPIERVTGWDTPYPHA-- 316 (338)
T ss_dssp --HCCCCEEEECSEEESCCHHHHHHHHHHHSCEEEEESSCSTTSTHHHHHHHHHHHSSSSCCSCCEEEECCSSCCCST--
T ss_pred --cCCCEEEEeecccCCCCHHHHHHHHhcCCEEEEEecCCcCCcHHHHHHHHHHHhcccccCCCeEEEecCCcCCcHH--
Confidence 6999999999999999999999999999999999999989999999999998876544567899999999999987
Q ss_pred HHHHcCCCHHHHHHHHHHHhC
Q 015415 387 LEEWTVVQPAQIVTAVEQLCQ 407 (407)
Q Consensus 387 l~~~~gl~~~~I~~~i~~ll~ 407 (407)
|++++|+++++|+++|+++++
T Consensus 317 l~~~~g~~~~~I~~~i~~~l~ 337 (338)
T 1qs0_B 317 QEWAYFPGPSRVGAALKKVME 337 (338)
T ss_dssp THHHHSCCHHHHHHHHHHSSC
T ss_pred HHHHHCCCHHHHHHHHHHHhc
Confidence 999999999999999999874
No 7
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=100.00 E-value=2.9e-56 Score=476.98 Aligned_cols=297 Identities=22% Similarity=0.272 Sum_probs=271.7
Q ss_pred cchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEEec
Q 015415 86 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGM 165 (407)
Q Consensus 86 ~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~ 165 (407)
+.+|+++|+++|.+++++|++|+++++|+...+| +.+|+++| |+||||+||+|++|+++|+|||++|+|||+++
T Consensus 321 ~~~~~~~~~~~l~~~~~~d~~v~~i~~d~~~~~~----~~~f~~~~-~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~~- 394 (629)
T 2o1x_A 321 AYSWSAAFGEAVTEWAKTDPRTFVVTPAMREGSG----LVEFSRVH-PHRYLDVGIAEEVAVTTAAGMALQGMRPVVAI- 394 (629)
T ss_dssp CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTT----CHHHHHHC-GGGEEECCSCHHHHHHHHHHHHHTTCEEEEEE-
T ss_pred hHHHHHHHHHHHHHHhhhCcCEEEEeccccCCcC----hHHHHHhc-CcceEeccccHHHHHHHHHHHHHcCCEEEEEe-
Confidence 5789999999999999999999999999975333 37899999 99999999999999999999999999999997
Q ss_pred chhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec-CCCCCCCCcCccchHH-HHHccCCCcEEEeeCCHHHHHHHHHH
Q 015415 166 NMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGVGRQLGAEHSQRLE-SYFQSIPGIQMVACSTPYNAKGLMKA 243 (407)
Q Consensus 166 ~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~~~~~G~tHsq~~e-a~~~~iPgl~V~~P~d~~e~~~~~~~ 243 (407)
++.|++|++|||++++|++ ++||+++++ +|..|++|+|||+..+ ++|+++|||+|++|+|++|+++++++
T Consensus 395 ~~~F~~~a~dqi~~~~a~~--------~~pvv~~~~~~g~~g~dG~tH~~~~d~a~~r~iP~l~v~~P~d~~e~~~~~~~ 466 (629)
T 2o1x_A 395 YSTFLQRAYDQVLHDVAIE--------HLNVTFCIDRAGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKY 466 (629)
T ss_dssp EHHHHGGGHHHHHHTTTTT--------TCCCEEEEESBBCCCTTCTTTCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhc--------CCCEEEEEECCccCCCCCcccCccHHHHHHHccCCcEEEecCCHHHHHHHHHH
Confidence 7789999999999999987 899999985 5667889999987766 99999999999999999999999999
Q ss_pred HHhcCCCEEEeeccccccCCCCCC-CccccccCCceEEeecCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccc
Q 015415 244 AIRSENPVILFEHVLLYNLKERIP-DEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLK 322 (407)
Q Consensus 244 a~~~~~Pv~ir~~r~~y~~~~~v~-~~~~~~~~Gk~~vl~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~ 322 (407)
|++.++|++||++|..++. ++ ++.+.+++|+++++++|+|++||++|++++.|++|++.|+ +++|||++|++
T Consensus 467 a~~~~~Pv~i~~~r~~~~~---~~~~~~~~~~~G~~~~~~~g~dv~iva~G~~v~~a~~Aa~~L~----~~~Vi~~~~~~ 539 (629)
T 2o1x_A 467 AQTHDGPFAIRYPRGNTAQ---VPAGTWPDLKWGEWERLKGGDDVVILAGGKALDYALKAAEDLP----GVGVVNARFVK 539 (629)
T ss_dssp HHHSSSCEEEECCSSBCCC---CCTTCCCCCCTTCCEEEECCSSEEEEECHHHHHHHHHHHTTCT----TEEEEECCEEE
T ss_pred HHhCCCCEEEEecCCCCCC---CcccccccccCCceEEEeeCCCEEEEEecHHHHHHHHHHHHhc----CCEEEeeCCCC
Confidence 9999999999999876532 22 2345688999999999999999999999999999999996 89999999999
Q ss_pred cCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCH--HHHHHHcCCCHHHHHH
Q 015415 323 PFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYA--GTLEEWTVVQPAQIVT 400 (407)
Q Consensus 323 Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~--~~l~~~~gl~~~~I~~ 400 (407)
|||++.|.++++++++++||||+...||+|++|++++.+++ +..|+.++|++|.|++++ ++|++++|+|+++|++
T Consensus 540 Pld~~~i~~~~~~~~~vv~vEe~~~~gG~g~~v~~~l~~~~---~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~I~~ 616 (629)
T 2o1x_A 540 PLDEEMLREVGGRARALITVEDNTVVGGFGGAVLEALNSMN---LHPTVRVLGIPDEFQEHATAESVHARAGIDAPAIRT 616 (629)
T ss_dssp SCCHHHHHHHHHHCSEEEEEEEEESSSSHHHHHHHHHHHTT---CCCEEEEEEECSSCCCSCCHHHHHHHHTCSHHHHHH
T ss_pred CCcHHHHHHHHhhCCcEEEEecCCCCCCHHHHHHHHHHHhC---CCCCeEEEeeCCcCCCCCCHHHHHHHHCcCHHHHHH
Confidence 99999999999999999999999999999999999999875 357899999999999985 6799999999999999
Q ss_pred HHHHHh
Q 015415 401 AVEQLC 406 (407)
Q Consensus 401 ~i~~ll 406 (407)
+|++++
T Consensus 617 ~i~~~~ 622 (629)
T 2o1x_A 617 VLAELG 622 (629)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 999875
No 8
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=100.00 E-value=6.7e-56 Score=473.68 Aligned_cols=299 Identities=17% Similarity=0.249 Sum_probs=270.8
Q ss_pred ccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEEe
Q 015415 85 HELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEG 164 (407)
Q Consensus 85 ~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t 164 (407)
.+.+|+++|+++|.+++++|++|+++++|+...+| +.+|+++| |+||||+||+|++|+++|+|||++|+|||+++
T Consensus 317 ~~~~~~~~~~~~l~~~~~~d~~v~~~~~d~~~~~~----~~~~~~~~-~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~~ 391 (621)
T 2o1s_A 317 GLPSYSKIFGDWLCETAAKDNKLMAITPAMREGSG----MVEFSRKF-PDRYFDVAIAEQHAVTFAAGLAIGGYKPIVAI 391 (621)
T ss_dssp -CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTT----CHHHHHHC-TTTEEECCSCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred chHHHHHHHHHHHHHHHhhCcCEEEEeCcccCCcC----hHHHHHhC-CCceEecCcCHHHHHHHHHHHHHCCCEEEEEe
Confidence 35689999999999999999999999999975333 37899999 99999999999999999999999999999998
Q ss_pred cchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec-CCCCCCCCcCccchHH-HHHccCCCcEEEeeCCHHHHHHHHH
Q 015415 165 MNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGVGRQLGAEHSQRLE-SYFQSIPGIQMVACSTPYNAKGLMK 242 (407)
Q Consensus 165 ~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~~~~~G~tHsq~~e-a~~~~iPgl~V~~P~d~~e~~~~~~ 242 (407)
++.|++|++|||++++|++ ++||+++.+ +|..|++|+|||+..+ ++|+++|||+|++|+|++|++++++
T Consensus 392 -~~~F~~~a~dqi~~~~a~~--------~~pvv~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~l~v~~P~d~~e~~~~l~ 462 (621)
T 2o1s_A 392 -YSTFLQRAYDQVLHDVAIQ--------KLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLY 462 (621)
T ss_dssp -ETTGGGGGHHHHHHTTTTT--------TCCCEEEEESCBCCCTTCGGGCBCSHHHHTTTSTTCEEECCSSHHHHHHHHH
T ss_pred -hHhHHHHHHHHHHHHHHhc--------CCCEEEEEECCccCCCCCCccCchHHHHHHhcCCCCEEEecCCHHHHHHHHH
Confidence 7788999999999999987 899999985 5667789999987766 9999999999999999999999999
Q ss_pred HHHhc-CCCEEEeeccccccCCCCCCCccccccCCceEEeecCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEeccc
Q 015415 243 AAIRS-ENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSL 321 (407)
Q Consensus 243 ~a~~~-~~Pv~ir~~r~~y~~~~~v~~~~~~~~~Gk~~vl~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l 321 (407)
+|++. ++|++||++|..++.. .+++. +.+++|+++++++|.|++||++|++++.|++| ++||+++|||++|+
T Consensus 463 ~a~~~~~~Pv~i~~~r~~~~~~-~~~~~-~~~~~G~~~~~~~g~dv~iva~G~~~~~a~~A-----~~Gi~v~Vi~~~~~ 535 (621)
T 2o1s_A 463 TGYHYNDGPSAVRYPRGNAVGV-ELTPL-EKLPIGKGIVKRRGEKLAILNFGTLMPEAAKV-----AESLNATLVDMRFV 535 (621)
T ss_dssp HHHHCCSSCEEEECCSSBCCCC-CCCCC-CCCCTTCCEEEECCSSEEEEEESTTHHHHHHH-----HHHHTCEEEECCEE
T ss_pred HHHHcCCCCEEEEeCCCCCCCC-CCCcc-ccccCCceEEeecCCCEEEEEecHHHHHHHHH-----cCCCCEEEEecCcc
Confidence 99998 9999999998765421 12222 66889999999999999999999999999999 45999999999999
Q ss_pred ccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCH--HHHHHHcCCCHHHHH
Q 015415 322 KPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYA--GTLEEWTVVQPAQIV 399 (407)
Q Consensus 322 ~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~--~~l~~~~gl~~~~I~ 399 (407)
+|||++.|.++++++++|+||||+...||||++|++++.+++ +..|+.++|++|.|++++ ++|++++|+|+++|+
T Consensus 536 ~P~d~~~i~~~~~~~~~vv~vEe~~~~gg~g~~v~~~l~~~~---~~~~v~~ig~~d~f~~~g~~~~l~~~~g~~~~~I~ 612 (621)
T 2o1s_A 536 KPLDEALILEMAASHEALVTVEENAIMGGAGSGVNEVLMAHR---KPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGME 612 (621)
T ss_dssp ESCCHHHHHHHHHHCSEEEEEEEEESTTSHHHHHHHHHHHTT---CCCCEEEEEECSSCCCCSCHHHHHHHTTCSHHHHH
T ss_pred CCCCHHHHHHHHccCCeEEEEECCCCCCCHHHHHHHHHHhcC---CCCCeEEEecCCcCCCCCCHHHHHHHHCcCHHHHH
Confidence 999999999999999999999999999999999999999875 367999999999999985 679999999999999
Q ss_pred HHHHHHhC
Q 015415 400 TAVEQLCQ 407 (407)
Q Consensus 400 ~~i~~ll~ 407 (407)
++|+++++
T Consensus 613 ~~i~~~l~ 620 (621)
T 2o1s_A 613 AKIKAWLA 620 (621)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 99999874
No 9
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=100.00 E-value=7.1e-55 Score=464.54 Aligned_cols=297 Identities=19% Similarity=0.230 Sum_probs=262.6
Q ss_pred cccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCC-eeEE
Q 015415 84 GHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGL-RPIV 162 (407)
Q Consensus 84 ~~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~-rp~~ 162 (407)
.+++++|++++++|.+++++||+|+++++|++.++ + ++.|+++| |+||||+||+|++|+++|+|||++|. +|++
T Consensus 310 ~~~~a~r~a~~~~L~~l~~~d~~vv~~~aD~~~~~--~--~~~~~~~~-p~R~~d~gIaE~~~v~~a~G~A~~G~~~~~~ 384 (616)
T 3mos_A 310 GDKIATRKAYGQALAKLGHASDRIIALDGDTKNST--F--SEIFKKEH-PDRFIECYIAEQNMVSIAVGCATRNRTVPFC 384 (616)
T ss_dssp TCBCCHHHHHHHHHHHHHHHCTTEEEEESSCHHHH--S--HHHHHHHC-GGGEEECCSCHHHHHHHHHHHHGGGCCEEEE
T ss_pred ccchHHHHHHHHHHHHHHhhCCCEEEEeCCcCCCc--c--hhhHHHhC-CCCeEEcCccHHHHHHHHHHHHHcCCCCEEE
Confidence 45688999999999999999999999999998532 2 57899999 99999999999999999999999998 6888
Q ss_pred EecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCC-CCCCCcCccchH--HHHHccCCCcEEEeeCCHHHHH
Q 015415 163 EGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGV-GRQLGAEHSQRL--ESYFQSIPGIQMVACSTPYNAK 238 (407)
Q Consensus 163 ~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~-~~~~G~tHsq~~--ea~~~~iPgl~V~~P~d~~e~~ 238 (407)
.+ |+.|++|++|||++. +++ ++|++++. +.|. .|.+|+|| |+. +++|+++|||+|++|+|++|++
T Consensus 385 ~~-f~~Fl~~a~dqi~~~-a~~--------~~~v~~v~~~~g~~~G~dG~tH-~~~ed~a~l~~iP~l~V~~P~d~~e~~ 453 (616)
T 3mos_A 385 ST-FAAFFTRAFDQIRMA-AIS--------ESNINLCGSHCGVSIGEDGPSQ-MALEDLAMFRSVPTSTVFYPSDGVATE 453 (616)
T ss_dssp EE-EGGGGGGGHHHHHHH-HHT--------TCCEEEEEESBSGGGCTTCGGG-CBSSHHHHHHTSTTEEEECCCSHHHHH
T ss_pred Ee-hHHHHHHHHHHHHHH-HHh--------CCCeEEEEECCCccccCCCCcc-cCHHHHHHhcCCCCCEEEecCCHHHHH
Confidence 74 778899999999985 665 78888887 4676 68899999 444 3999999999999999999999
Q ss_pred HHHHHHHhcCCCEEEeeccccccCCCCCCCccccccCCceEEeecCCc--EEEEEechhHHHHHHHHHHHhhCCCCceEE
Q 015415 239 GLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEH--VTILTYSRMRYHVMQAAKTLVNKGYDPEVI 316 (407)
Q Consensus 239 ~~~~~a~~~~~Pv~ir~~r~~y~~~~~v~~~~~~~~~Gk~~vl~eG~d--v~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI 316 (407)
.++++|++.++|+++|.+|.. .+.++..++.+++||++++++|.| ++||++|+|++.|++|+++|+++||+++||
T Consensus 454 ~~l~~a~~~~gp~~ir~~r~~---~p~~~~~~~~~~~Gka~vl~eg~d~dv~iva~G~~v~~al~Aa~~L~~~Gi~v~Vi 530 (616)
T 3mos_A 454 KAVELAANTKGICFIRTSRPE---NAIIYNNNEDFQVGQAKVVLKSKDDQVTVIGAGVTLHEALAAAELLKKEKINIRVL 530 (616)
T ss_dssp HHHHHHHTCCSEEEEECCSSC---CBCCSCTTCCCCTTCCEEEECCSSEEEEEECCTHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHhcCCCEEEEEeCCC---CCccCCCcccccCCeEEEEEeCCCCCEEEEEeCHHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999988753 223344455678999999999876 999999999999999999999999999999
Q ss_pred EecccccCchhhHHHHHhcC-CcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCH--HHHHHHcCC
Q 015415 317 DIRSLKPFDLYTIGNSIKKT-HRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYA--GTLEEWTVV 393 (407)
Q Consensus 317 ~~~~l~Pfd~~~l~~~~~~~-~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~--~~l~~~~gl 393 (407)
|+++|+|||+++|.++++++ ++|+||||+...||+|++|++.+.+.+ ..|+.++|+++ |++++ ++|++++|+
T Consensus 531 dlr~l~PlD~e~i~~~~~~~~~~vvvvEe~~~~GG~G~~v~~~l~~~~----~~~v~~~g~~~-f~~~g~~~~l~~~~gl 605 (616)
T 3mos_A 531 DPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVSSAVVGEP----GITVTHLAVNR-VPRSGKPAELLKMFGI 605 (616)
T ss_dssp ECSEEESCCHHHHHHHHHHTTTEEEEEEEEESTTSHHHHHHHHHTTCT----TCEEEEEEECS-CCCCSCHHHHHHHTTC
T ss_pred EeCccCCCCHHHHHHHHHhcCCEEEEEcCCCCCcCHHHHHHHHHHhcC----CCCEEEEeCCC-CCCCCCHHHHHHHHCc
Confidence 99999999999999999999 999999999999999999999998863 56899999995 66653 678999999
Q ss_pred CHHHHHHHHHH
Q 015415 394 QPAQIVTAVEQ 404 (407)
Q Consensus 394 ~~~~I~~~i~~ 404 (407)
|+++|+++|++
T Consensus 606 ~~~~I~~~i~~ 616 (616)
T 3mos_A 606 DRDAIAQAVRG 616 (616)
T ss_dssp SHHHHHHHHTC
T ss_pred CHHHHHHHHhC
Confidence 99999999863
No 10
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=100.00 E-value=1.2e-50 Score=435.42 Aligned_cols=296 Identities=14% Similarity=0.107 Sum_probs=246.9
Q ss_pred CcccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCcc-ccchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCee
Q 015415 83 QGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSY-KVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRP 160 (407)
Q Consensus 83 ~~~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~-~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp 160 (407)
..+++++|++++++|.++++++|+++++++|++.+++++ +.+++|.++|+|+||||+||+||+|+++|+|||++ |+||
T Consensus 375 ~~~~~a~R~a~g~~L~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~R~~d~GIaE~~mv~~A~GlA~~gG~~P 454 (690)
T 3m49_A 375 LGSKAATRNSSGAVINAIAESVPSFFGGSADLAGSNKTYMNNEKDFTRDDYSGKNIWYGVREFAMGAAMNGIALHGGLKT 454 (690)
T ss_dssp TTCEEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTSCBCBTTBTTCCEEECCSCHHHHHHHHHHHHHHSSCEE
T ss_pred cccchHHHHHHHHHHHHHHhhCCCEEEEeCcccccCCccccccccchhhcCCCceEEcCchHHHHHHHHHHHHHcCCCEE
Confidence 446789999999999999999999999999999887774 66788998887999999999999999999999999 9999
Q ss_pred EEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec-CCC-CCCCCcCccchHH-HHHccCCCcEEEeeCCHHHH
Q 015415 161 IVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGV-GRQLGAEHSQRLE-SYFQSIPGIQMVACSTPYNA 237 (407)
Q Consensus 161 ~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~-~~~~G~tHsq~~e-a~~~~iPgl~V~~P~d~~e~ 237 (407)
|++|+. .|..++..||++ +|++ ++||+++++ +|. +|.+|+||+...+ ++||++|||+|++|+|++|+
T Consensus 455 ~~~tf~-~Fs~f~~~air~-~al~--------~lpVv~v~~~~gigvG~dG~THq~ied~a~lr~iPnl~V~~Pad~~E~ 524 (690)
T 3m49_A 455 YGGTFF-VFSDYLRPAIRL-AALM--------QLPVTYVFTHDSIAVGEDGPTHEPIEQLAALRAMPNVSVIRPADGNES 524 (690)
T ss_dssp EEEEEG-GGGGGGHHHHHH-HHHH--------TCCCEEEEECCSGGGCTTCGGGCCSSHHHHHHTSTTCEEECCSSHHHH
T ss_pred EEEecH-HHHHHHHHHHHH-HHhc--------CCCcEEEEECCCcCCCCCCCccCCHHHHHHHhcCCCCEEEeeCCHHHH
Confidence 999743 333334456764 7877 899999985 565 6889999943333 99999999999999999999
Q ss_pred HHHHHHHHhc-CCCEEEeeccccccCCCCCCCc----cccccCCceEEeecCC----cEEEEEechhHHHHHHHHHHHhh
Q 015415 238 KGLMKAAIRS-ENPVILFEHVLLYNLKERIPDE----EYICNLEEAEMVRPGE----HVTILTYSRMRYHVMQAAKTLVN 308 (407)
Q Consensus 238 ~~~~~~a~~~-~~Pv~ir~~r~~y~~~~~v~~~----~~~~~~Gk~~vl~eG~----dv~Iia~G~~~~~al~Aa~~L~~ 308 (407)
+.++++|++. ++|++||++|...+ .++.+ .+.+++|+ +++++|+ |++||++|+|++.|++|++.|++
T Consensus 525 ~~~l~~Ai~~~~~Pv~ir~~R~~~p---~~~~~~~~~~~~~~~G~-~vlr~g~~g~~dvtiia~G~~v~~Al~Aa~~L~~ 600 (690)
T 3m49_A 525 VAAWRLALESTNKPTALVLTRQDLP---TLEGAKDDTYEKVAKGA-YVVSASKKETADVILLATGSEVSLAVEAQKALAV 600 (690)
T ss_dssp HHHHHHHHHCSSSCEEEECCSSEEE---CCHHHHTTHHHHHHTSC-EEEECCSSSSCSEEEEECTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCEEEEeecccCC---CCCccccccccccCCCe-EEEEecCCCCCCEEEEEechHHHHHHHHHHHHHh
Confidence 9999999998 79999999986543 22222 24677887 7889885 99999999999999999999999
Q ss_pred CCCCceEEEecccccCch--hhHHHHHh--cCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCH
Q 015415 309 KGYDPEVIDIRSLKPFDL--YTIGNSIK--KTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYA 384 (407)
Q Consensus 309 ~Gi~v~VI~~~~l~Pfd~--~~l~~~~~--~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~ 384 (407)
+||+++|||++|++|||. +.+.+++. +++++|+|||+...| + .+++... ...+|+ |.|+.++
T Consensus 601 ~GI~~~Vid~~~i~p~D~~d~~~~~~v~~~~~~~~v~vEe~~~~G-~----~~~~~~~--------~~~igi-d~Fg~sg 666 (690)
T 3m49_A 601 DGVDASVVSMPSMDRFEAQTAEYKESVLPKAVTKRFAIEMGATFG-W----HRYVGLE--------GDVLGI-DTFGASA 666 (690)
T ss_dssp TTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCCTT-T----HHHHTTT--------CEEECC-CSCCCSS
T ss_pred cCCCeEEEecccCCcCccccHHHHHHHhhccCCeEEEEECCchhh-H----HHHhccC--------CCEEcc-CcCcCcC
Confidence 999999999999999996 45555554 578899999998765 4 3444322 236888 8999874
Q ss_pred --HHHHHHcCCCHHHHHHHHHHHh
Q 015415 385 --GTLEEWTVVQPAQIVTAVEQLC 406 (407)
Q Consensus 385 --~~l~~~~gl~~~~I~~~i~~ll 406 (407)
++|++++|+|++.|+++|+++|
T Consensus 667 ~~~~l~~~~Glt~e~I~~~i~~~l 690 (690)
T 3m49_A 667 PGEKIMEEYGFTVENVVRKVKEML 690 (690)
T ss_dssp CHHHHHHHTTCSHHHHHHHHHHHC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHhC
Confidence 7899999999999999999875
No 11
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=100.00 E-value=4.4e-50 Score=427.61 Aligned_cols=285 Identities=11% Similarity=0.080 Sum_probs=242.8
Q ss_pred cccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEE
Q 015415 84 GHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIV 162 (407)
Q Consensus 84 ~~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~ 162 (407)
..++++|++++++|.++++++|+++++++|++.++++. -.+.++|+|+||||+||+|++|+++|+|||++ |+|||+
T Consensus 335 ~~~~a~r~a~~~~l~~l~~~~p~~v~~~aDl~~s~~~~---~~~~~~f~p~R~~d~GIaE~~~v~~a~GlA~~gG~~P~~ 411 (632)
T 3l84_A 335 GKDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTE---LHSMGDFVEGKNIHFGIREHAMAAINNAFARYGIFLPFS 411 (632)
T ss_dssp TCCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCC---CTTSCBTTTSSEEECCSCHHHHHHHHHHHHHHSSCEEEE
T ss_pred ccchHHHHHHHHHHHHHHhhCCCEEEEecccCCccCcc---hhcccccCCCCeEEeCccHHHHHHHHHHHHHcCCCEEEE
Confidence 45788999999999999999999999999998766542 12346788999999999999999999999999 999999
Q ss_pred EecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCC-CCCCCcCccchHH-HHHccCCCcEEEeeCCHHHHHH
Q 015415 163 EGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGV-GRQLGAEHSQRLE-SYFQSIPGIQMVACSTPYNAKG 239 (407)
Q Consensus 163 ~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~-~~~~G~tHsq~~e-a~~~~iPgl~V~~P~d~~e~~~ 239 (407)
+| |..|++|+++||++ .|++ ++||++++ ..|. +|.+|+||+...+ ++||++|||+|++|+|++|++.
T Consensus 412 ~~-f~~F~~~~~~~ir~-~a~~--------~~pv~~~~t~~g~g~G~dG~THq~~ed~a~lr~iP~l~V~~P~d~~e~~~ 481 (632)
T 3l84_A 412 AT-FFIFSEYLKPAARI-AALM--------KIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAMPNFLTFRPADGVENVK 481 (632)
T ss_dssp EE-EGGGHHHHHHHHHH-HHHH--------TCCCEEEEECCSGGGCTTCGGGSCSSHHHHHHHSSSCEEECCSSHHHHHH
T ss_pred Ee-cHHHHHHHHHHHHH-Hhcc--------CCCEEEEEECCCcCCCCCCCCCCCHhHHHHHhcCCCCEEEecCCHHHHHH
Confidence 97 77889999999985 7877 89999997 4444 6889999943333 9999999999999999999999
Q ss_pred HHHHHHhcCCCEEEeeccccccCCCCCCCc-cccccCCce-EEeec--CCcEEEEEechhHHHHHHHHHHHhhCCCCceE
Q 015415 240 LMKAAIRSENPVILFEHVLLYNLKERIPDE-EYICNLEEA-EMVRP--GEHVTILTYSRMRYHVMQAAKTLVNKGYDPEV 315 (407)
Q Consensus 240 ~~~~a~~~~~Pv~ir~~r~~y~~~~~v~~~-~~~~~~Gk~-~vl~e--G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~V 315 (407)
++++|++.++|+|||++|... ++++ .+..+++++ +++++ |.|++||++|+|++.|++|++.|+++||+++|
T Consensus 482 ~l~~A~~~~~Pv~ir~~r~~~-----~~~~~~~~~~~~~g~~vl~~~~g~dvtiia~G~~v~~al~Aa~~L~~~Gi~~~V 556 (632)
T 3l84_A 482 AWQIALNADIPSAFVLSRQKL-----KALNEPVFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQGFACNV 556 (632)
T ss_dssp HHHHHHHCSSCEEEECCSSCB-----CCCCCCSBCCGGGSSEEEECCTTCSEEEEECGGGHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHhCCCCEEEEEcCCCC-----CCCccccccccccccEEEEecCCCCEEEEEechHHHHHHHHHHHHHhcCCCeEE
Confidence 999999999999999988643 2222 233456665 88998 89999999999999999999999999999999
Q ss_pred EEecccccCchhh--HHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCH--HHHHHHc
Q 015415 316 IDIRSLKPFDLYT--IGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYA--GTLEEWT 391 (407)
Q Consensus 316 I~~~~l~Pfd~~~--l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~--~~l~~~~ 391 (407)
||++||+|||++. +.+++.+ ++||+|||+.. .||++ ... .++|+ |.|+.++ ++|.+++
T Consensus 557 i~~~~i~PlD~~~~~~~~sv~~-~~vv~vE~~~~-~g~~~------------~~~---~~iGi-d~Fg~sg~~~~l~~~~ 618 (632)
T 3l84_A 557 VSMPCFELFEKQDKAYQERLLK-GEVIGVEAAHS-NELYK------------FCH---KVYGI-ESFGESGKDKDVFERF 618 (632)
T ss_dssp EECSBHHHHHTSCHHHHHHHCC-SEEEEECSSCC-GGGGG------------TCS---EEECC-CSCCCSSCHHHHHHHT
T ss_pred EecCcCCCcchhHHHHHHHhcC-CCEEEEeCChh-hhHHH------------HhC---eEEEc-CCCcccCCHHHHHHHh
Confidence 9999999999985 6677776 78999999975 45531 112 67999 9999884 7899999
Q ss_pred CCCHHHHHHHHHH
Q 015415 392 VVQPAQIVTAVEQ 404 (407)
Q Consensus 392 gl~~~~I~~~i~~ 404 (407)
|+|++.|+++|++
T Consensus 619 Glt~~~I~~~i~~ 631 (632)
T 3l84_A 619 GFSVSKLVNFILS 631 (632)
T ss_dssp TCSHHHHHHHHTT
T ss_pred CcCHHHHHHHHhh
Confidence 9999999999864
No 12
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=100.00 E-value=2.2e-50 Score=434.30 Aligned_cols=293 Identities=13% Similarity=0.111 Sum_probs=251.9
Q ss_pred cccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCcc-ccchhhhhh---hCC---CceEeccchhHHHHHHHHHHHhc
Q 015415 84 GHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSY-KVTKGLADK---YGD---LRVLDTPIAENSFTGMGIGAAMT 156 (407)
Q Consensus 84 ~~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~-~~~~~~~~~---fgp---~R~i~~GIaE~~~vg~A~GlA~~ 156 (407)
.+++++|++++++|.++++++|+++++++|++.+++++ +.+..|+++ | | +||||+||+|++|+++|+|||++
T Consensus 392 ~~~~atR~A~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~-p~~~~R~~d~GIaE~~mv~~AaGlA~~ 470 (711)
T 3uk1_A 392 GETVATRKASQQTIEGLAAVLPELLGGSADLTGSNLTNWKASKAVRANADGP-GVQWGNHINYGVREFGMSAAINGLVLH 470 (711)
T ss_dssp CCCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCEECSSSS-SEECCSEEECCSCHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHhhCCCEEEEeccccCcCCcccccchhhhhhhccC-CCCCCcEEEeCccHHHHHHHHHHHHHc
Confidence 56789999999999999999999999999998776663 345688888 9 8 99999999999999999999995
Q ss_pred -CCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec-CCC-CCCCCcCccchHH--HHHccCCCcEEEee
Q 015415 157 -GLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGV-GRQLGAEHSQRLE--SYFQSIPGIQMVAC 231 (407)
Q Consensus 157 -G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~-~~~~G~tHsq~~e--a~~~~iPgl~V~~P 231 (407)
|+|||+++ |+.|++|+++||++ +|++ ++||++++. +|. .|.+|+|| |+.+ ++|+++|||+|++|
T Consensus 471 ~G~~Pv~~~-f~~F~~~~~~~ir~-~a~~--------~lpv~~v~thdg~gvG~dG~TH-q~~ed~a~lr~iPnl~V~~P 539 (711)
T 3uk1_A 471 GGYKPFGGT-FLTFSDYSRNALRV-AALM--------KVPSIFVFTHDSIGLGEDGPTH-QSVEHVASLRLIPNLDVWRP 539 (711)
T ss_dssp SSCEEEEEE-EGGGHHHHHHHHHH-HHHH--------TCCCEEEEECCSGGGCTTCTTT-CCSSHHHHHHTSTTCEEECC
T ss_pred CCCEEEEEE-hHHHHHHHHHHHHH-hhhc--------CCCEEEEEECCCcCcCCCCCcc-CChhHHHHHhcCCCCEEEec
Confidence 99999997 77899999999986 6876 899999973 444 58899999 5543 99999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEeeccccccCCCCCCCcc---ccccCCceEEeec--C----CcEEEEEechhHHHHHHH
Q 015415 232 STPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEE---YICNLEEAEMVRP--G----EHVTILTYSRMRYHVMQA 302 (407)
Q Consensus 232 ~d~~e~~~~~~~a~~~~~Pv~ir~~r~~y~~~~~v~~~~---~~~~~Gk~~vl~e--G----~dv~Iia~G~~~~~al~A 302 (407)
+|++|++.++++|++.++|+|||++|...+ .+++++ +.++.|++ ++++ | .|++||++|+|++.|++|
T Consensus 540 ad~~E~~~~l~~Ai~~~~Pv~ir~~r~~~p---~~~~~~~~~~~i~~G~~-vl~~~~G~~~~~dvtiia~G~~v~~al~A 615 (711)
T 3uk1_A 540 ADTVETAVAWTYAVAHQHPSCLIFSRQNLA---FNARTDAQLANVEKGGY-VLRDWDEEIVARKIILIATGSEVELAMKA 615 (711)
T ss_dssp SSHHHHHHHHHHHHHSSSCEEEECCSSEEC---CCCCCHHHHHHGGGSSE-EEECCCSSCCSEEEEEEECTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeeCCCCC---CCCCccccccccCCCeE-EEEecCCCCCCCCEEEEEecHHHHHHHHH
Confidence 999999999999999999999999886543 233332 56778874 6774 7 799999999999999999
Q ss_pred HHHHhhCCCCceEEEecccccCchhh--HHHHHhcCC-cEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCC
Q 015415 303 AKTLVNKGYDPEVIDIRSLKPFDLYT--IGNSIKKTH-RVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDV 379 (407)
Q Consensus 303 a~~L~~~Gi~v~VI~~~~l~Pfd~~~--l~~~~~~~~-~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~ 379 (407)
++.|+++||+++|||++||+|||++. +++++.+++ .+|++|++.. +||++.+ . .+..++|+ |.
T Consensus 616 a~~L~~~GI~~~Vid~~si~plD~~~~~~~~sv~~~~~~~V~vE~~~~-~g~~~~~----g--------~~~~~iGi-d~ 681 (711)
T 3uk1_A 616 VEPLAQQGIAARVVSMPSSDVFDRQDAEYRERVLPHGVRRVAIEAGVT-DFWRKYV----G--------LEGGVVGI-DT 681 (711)
T ss_dssp HHHHHHTTEEEEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCS-GGGHHHH----T--------TTSEEECC-CS
T ss_pred HHHHHHcCCCeEEEecCcCCccchhHHHHHHHhhccCCeEEEEeCCcc-ccHHHHh----C--------CCceEEEe-CC
Confidence 99999999999999999999999987 567777776 4899999875 5776443 1 23367998 89
Q ss_pred CCCCH--HHHHHHcCCCHHHHHHHHHHHh
Q 015415 380 PTPYA--GTLEEWTVVQPAQIVTAVEQLC 406 (407)
Q Consensus 380 ~~~~~--~~l~~~~gl~~~~I~~~i~~ll 406 (407)
|+.++ ++|++++|+|++.|+++++++|
T Consensus 682 Fg~sg~~~~L~~~~Glt~e~Iv~~~~~~l 710 (711)
T 3uk1_A 682 FGESAPAGVLFKHFGFTVEHVIETAKAVL 710 (711)
T ss_dssp CCCSSCHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred CcCcCCHHHHHHHHCcCHHHHHHHHHHHh
Confidence 99874 7899999999999999999987
No 13
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=100.00 E-value=4.9e-50 Score=430.58 Aligned_cols=295 Identities=13% Similarity=0.058 Sum_probs=250.8
Q ss_pred cccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCcc-ccchhhhhhh-----CC----CceEeccchhHHHHHHHHHH
Q 015415 84 GHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSY-KVTKGLADKY-----GD----LRVLDTPIAENSFTGMGIGA 153 (407)
Q Consensus 84 ~~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~-~~~~~~~~~f-----gp----~R~i~~GIaE~~~vg~A~Gl 153 (407)
.+++++|++++++|.+++++||+++++++|++.+++++ +.+..|+++| +| +||||+||+||+|+++|+||
T Consensus 372 ~~~~atr~a~~~~L~~l~~~~p~vv~~saDl~~s~~t~~~~~~~f~~~~~~~~~~p~~~~~R~id~GIaE~~mv~~A~Gl 451 (700)
T 3rim_A 372 SKALATRAASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSFGPPSISTKEYTAHWYGRTLHFGVREHAMGAILSGI 451 (700)
T ss_dssp SSCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEESCGGGCCSSCCEETTCCEEECCSCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhhCCCEEEEeCCccCCCCcccccchhhcccccccccCCcccCCceeecCccHHHHHHHHHHH
Confidence 35789999999999999999999999999999877763 4457888888 46 69999999999999999999
Q ss_pred Hhc-CCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec-CCC-CCCCCcCccchHH--HHHccCCCcEE
Q 015415 154 AMT-GLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGV-GRQLGAEHSQRLE--SYFQSIPGIQM 228 (407)
Q Consensus 154 A~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~-~~~~G~tHsq~~e--a~~~~iPgl~V 228 (407)
|++ |+|||++| |..|+.++++||++ +|++ ++||+++.. +|. .|.+|+|| |+++ ++||++|||+|
T Consensus 452 A~~gG~~Pv~~t-F~~F~d~~~~~ir~-~al~--------~lpvv~v~thdg~gvG~dG~TH-q~ied~a~lr~iPnl~V 520 (700)
T 3rim_A 452 VLHGPTRAYGGT-FLQFSDYMRPAVRL-AALM--------DIDTIYVWTHDSIGLGEDGPTH-QPIEHLSALRAIPRLSV 520 (700)
T ss_dssp HHHSSCEEEEEE-EGGGGGGGHHHHHH-HHHH--------TCCCEEEEECCSGGGCTTCTTT-SCSSHHHHHHTSTTCEE
T ss_pred HHcCCCEEEEEe-cHHHHHHHHHHHHH-hcCC--------CCCEEEEEeCCCcccCCCCCcc-CChhHHHHHhcCCCCEE
Confidence 999 99999997 55677888899985 7887 899999974 444 68899999 6554 99999999999
Q ss_pred EeeCCHHHHHHHHHHHHhcC---CCEEEeeccccccCCCCCCCc-cccccCCceEEeecCC--------cEEEEEechhH
Q 015415 229 VACSTPYNAKGLMKAAIRSE---NPVILFEHVLLYNLKERIPDE-EYICNLEEAEMVRPGE--------HVTILTYSRMR 296 (407)
Q Consensus 229 ~~P~d~~e~~~~~~~a~~~~---~Pv~ir~~r~~y~~~~~v~~~-~~~~~~Gk~~vl~eG~--------dv~Iia~G~~~ 296 (407)
++|+|++|++.++++|++.+ +|++||++|...+ .++.+ .+.+++|+ +++++|. |++||++|+|+
T Consensus 521 ~~Pad~~e~~~~l~~Ai~~~~~~~Pv~ir~~r~~~~---~~~~~~~~~~~~G~-~vlr~g~~~~~~~~~dvtiia~G~~v 596 (700)
T 3rim_A 521 VRPADANETAYAWRTILARRNGSGPVGLILTRQGVP---VLDGTDAEGVARGG-YVLSDAGGLQPGEEPDVILIATGSEV 596 (700)
T ss_dssp ECCSSHHHHHHHHHHHHTTTTCSSCEEEECCSSEEC---CCTTCCHHHHHHSC-EEEECCSCCCTTCCCSEEEEECGGGH
T ss_pred EeCCCHHHHHHHHHHHHHccCCCCCEEEEeccccCC---CcCcccccccCCCc-EEEecCCccccCCCCCEEEEEechHH
Confidence 99999999999999999986 5999999987543 23333 36678898 7999986 99999999999
Q ss_pred HHHHHHHHHHhhCCCCceEEEecccccCchh--hHHHHH-hc-CCcEEEEecCccccchHHHHHHHHHhccccCCCCCeE
Q 015415 297 YHVMQAAKTLVNKGYDPEVIDIRSLKPFDLY--TIGNSI-KK-THRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIV 372 (407)
Q Consensus 297 ~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~--~l~~~~-~~-~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~ 372 (407)
+.|++|++.|+++||+++|||++|++|||.+ .+.+.+ ++ ++++|+|||+...|+ .+++.+. ..
T Consensus 597 ~~al~Aa~~L~~~Gi~~~VVd~~~i~p~D~~~~~~~~~v~~~~~~~~vtvEe~~~~G~-----~~~~~~~--------~~ 663 (700)
T 3rim_A 597 QLAVAAQTLLADNDILARVVSMPCLEWFEAQPYEYRDAVLPPTVSARVAVEAGVAQCW-----HQLVGDT--------GE 663 (700)
T ss_dssp HHHHHHHHHHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCTTCCCEEEECSSCSGGG-----HHHHCTT--------CE
T ss_pred HHHHHHHHHHHhcCCCeEEEEeccccccCcccHHHHHHHhcccceEEEEEeCCCchhH-----HHHHhcC--------Cc
Confidence 9999999999999999999999999999995 444444 43 678999999987654 3444332 25
Q ss_pred EeecCCCCCCCH--HHHHHHcCCCHHHHHHHHHHHhC
Q 015415 373 CLSSQDVPTPYA--GTLEEWTVVQPAQIVTAVEQLCQ 407 (407)
Q Consensus 373 ~ig~~d~~~~~~--~~l~~~~gl~~~~I~~~i~~ll~ 407 (407)
++|+ |.|+.++ ++|++++|+|++.|+++|++++.
T Consensus 664 ~igi-d~Fg~sg~~~~l~~~~Glt~e~I~~~i~~~l~ 699 (700)
T 3rim_A 664 IVSI-EHYGESADHKTLFREYGFTAEAVAAAAERALD 699 (700)
T ss_dssp EECC-CSCCCSSCHHHHHHHTTCSHHHHHHHHHHHHC
T ss_pred EEcc-CcCcCcCCHHHHHHHhCcCHHHHHHHHHHHhh
Confidence 7999 8999884 78999999999999999999874
No 14
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=100.00 E-value=1.5e-49 Score=427.54 Aligned_cols=294 Identities=14% Similarity=0.090 Sum_probs=252.4
Q ss_pred CcccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCcc-ccchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCee
Q 015415 83 QGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSY-KVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRP 160 (407)
Q Consensus 83 ~~~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~-~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp 160 (407)
..+++++|++++++|.++++++|+++++++|++.+++++ +.+..|+++| |+||||+||+|++|+++|+|||++ |++|
T Consensus 351 ~~~~~~~r~a~~~~L~~l~~~~p~v~~~~aDl~~s~~~~~~~~~~f~~~~-p~R~id~GIaE~~~v~~a~GlA~~gG~~P 429 (669)
T 2r8o_A 351 NPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDA-AGNYIHYGVREFGMTAIANGISLHGGFLP 429 (669)
T ss_dssp SCCCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCCCTTCCBTTTCT-TCSEEECCSCHHHHHHHHHHHHHHSSCEE
T ss_pred CCccHHHHHHHHHHHHHHHhhCCCeEEecCcccccccccccccccccccC-CCCeeecchhHHHHHHHHHHHHHcCCCeE
Confidence 345789999999999999999999999999999887775 4457899999 999999999999999999999999 8999
Q ss_pred EEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec-CCC-CCCCCcCccchHH--HHHccCCCcEEEeeCCHHH
Q 015415 161 IVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGV-GRQLGAEHSQRLE--SYFQSIPGIQMVACSTPYN 236 (407)
Q Consensus 161 ~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~-~~~~G~tHsq~~e--a~~~~iPgl~V~~P~d~~e 236 (407)
|+.+ |..|+.++++||++ +|++ ++||+++++ +|. .|.+|+|| |+++ ++||++|||+|++|+|++|
T Consensus 430 ~~~t-f~~F~~~~~~~ir~-~a~~--------~lpvv~~~t~~g~~~G~dG~tH-q~~edla~lr~iP~l~V~~Pad~~E 498 (669)
T 2r8o_A 430 YTST-FLMFVEYARNAVRM-AALM--------KQRQVMVYTHDSIGLGEDGPTH-QPVEQVASLRVTPNMSTWRPCDQVE 498 (669)
T ss_dssp EEEE-EGGGGGTTHHHHHH-HHHT--------TCCCEEEEECCSGGGCTTCTTT-CCSSHHHHHHTSTTCEEECCSSHHH
T ss_pred EEee-hHHHHHHHHHHHHH-HHhc--------CCCEEEEEeCCCcCcCCCCCcc-CCHHHHHHhcCCCCCEEEecCCHHH
Confidence 9986 66778899999987 7776 899999984 444 47899999 6664 8999999999999999999
Q ss_pred HHHHHHHHHhc-CCCEEEeeccccccCCCCCCCccc---cccCCceEEeec--C-CcEEEEEechhHHHHHHHHHHHhhC
Q 015415 237 AKGLMKAAIRS-ENPVILFEHVLLYNLKERIPDEEY---ICNLEEAEMVRP--G-EHVTILTYSRMRYHVMQAAKTLVNK 309 (407)
Q Consensus 237 ~~~~~~~a~~~-~~Pv~ir~~r~~y~~~~~v~~~~~---~~~~Gk~~vl~e--G-~dv~Iia~G~~~~~al~Aa~~L~~~ 309 (407)
++.++++|++. ++|+|||++|..++ .++.+++ .+++|+ +++++ | +|++||++|+++++|++|++.|+++
T Consensus 499 ~~~~l~~a~~~~~~Pv~i~~~r~~~~---~~~~~~~~~~~~~~G~-~vl~~~~g~~dv~iva~G~~v~~al~Aa~~L~~~ 574 (669)
T 2r8o_A 499 SAVAWKYGVERQDGPTALILSRQNLA---QQERTEEQLANIARGG-YVLKDCAGQPELIFIATGSEVELAVAAYEKLTAE 574 (669)
T ss_dssp HHHHHHHHHHCSSSCEEEECCSSEEC---CCCCCHHHHHHGGGSC-EEEECCSSSCSEEEEECGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcEEEEeCCCCCC---CCCCccchhhhccCCC-EEEeccCCCCCEEEEEECHHHHHHHHHHHHHHhc
Confidence 99999999997 89999999987654 2333332 267784 78888 7 8999999999999999999999999
Q ss_pred CCCceEEEecccccCchhh---HHHHHhcC-CcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCH-
Q 015415 310 GYDPEVIDIRSLKPFDLYT---IGNSIKKT-HRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYA- 384 (407)
Q Consensus 310 Gi~v~VI~~~~l~Pfd~~~---l~~~~~~~-~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~- 384 (407)
||+++|||++|++|||++. +.+.++++ +++|++|++.. +||++ ++.++ ...+|+ |.|+.++
T Consensus 575 Gi~~~Vv~~~~~~pld~~~~~~~~~v~~~~~~~vv~vE~~~~-~g~~~----~~~~~--------~~~ig~-d~fg~sg~ 640 (669)
T 2r8o_A 575 GVKARVVSMPSTDAFDKQDAAYRESVLPKAVTARVAVEAGIA-DYWYK----YVGLN--------GAIVGM-TTFGESAP 640 (669)
T ss_dssp TCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEEEEEEG-GGGHH----HHTTS--------SEEEEE-CSCCCSSC
T ss_pred CCCeEEEEeccCCccccchHHHHHHhccccCceEEEEeCCch-hhHHH----HhcCC--------CeEEEc-CCCCCcCC
Confidence 9999999999999999985 55555553 78999999987 78875 34332 156888 7888874
Q ss_pred -HHHHHHcCCCHHHHHHHHHHHh
Q 015415 385 -GTLEEWTVVQPAQIVTAVEQLC 406 (407)
Q Consensus 385 -~~l~~~~gl~~~~I~~~i~~ll 406 (407)
++|++++|+|++.|+++|++++
T Consensus 641 ~~~l~~~~Gl~~~~I~~~~~~~~ 663 (669)
T 2r8o_A 641 AELLFEEFGFTVDNVVAKAKELL 663 (669)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH
Confidence 8899999999999999999986
No 15
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=100.00 E-value=1.5e-49 Score=425.71 Aligned_cols=295 Identities=14% Similarity=0.084 Sum_probs=247.0
Q ss_pred CcccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCc-cccchhhh-hhhCCCceEeccchhHHHHHHHHHHHhc-CCe
Q 015415 83 QGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGS-YKVTKGLA-DKYGDLRVLDTPIAENSFTGMGIGAAMT-GLR 159 (407)
Q Consensus 83 ~~~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~-~~~~~~~~-~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~r 159 (407)
..+++++|++++++|.++++++|+++++++|++.++++ ++.+.+|. ++| |+||||+||+|++|+++|+|||++ |+|
T Consensus 351 ~~~~~a~r~a~~~aL~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~-p~R~~d~GIaE~~~v~~a~GlA~~gG~~ 429 (663)
T 3kom_A 351 NPVKVATRKASQMVLEVLCKNMPEMFGGSADLTGSNNTNWSGSVWLNNTQE-GANYLSYGVREFGMAAIMNGLSLYGGIK 429 (663)
T ss_dssp SCCCEEHHHHHHHHHHHHHHHCTTEEEEECCC--CCSCCCTTCCBTTTCST-TCCEEECCSCHHHHHHHHHHHHHHSSCE
T ss_pred cCcchhHHHHHHHHHHHHHhhCCCEEEEecccCCCCCcccccccccccccC-CCCeEecCccHHHHHHHHHHHHHcCCCE
Confidence 35678999999999999999999999999999988776 56667885 999 999999999999999999999999 999
Q ss_pred eEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCC-CCCCCcCccchH-H-HHHccCCCcEEEeeCCHH
Q 015415 160 PIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGV-GRQLGAEHSQRL-E-SYFQSIPGIQMVACSTPY 235 (407)
Q Consensus 160 p~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~-~~~~G~tHsq~~-e-a~~~~iPgl~V~~P~d~~ 235 (407)
||++| |..|+.++++||++ +|++ ++||+++. ..|. .|.+|+|| |+. + ++|+++|||+|++|+|++
T Consensus 430 P~~~t-f~~F~~~~~~~ir~-~a~~--------~lpvv~~~t~~g~g~G~dG~TH-q~~ed~a~lr~iPnl~V~~Pad~~ 498 (663)
T 3kom_A 430 PYGGT-FLVFSDYSRNAIRM-SALM--------KQPVVHVMSHDSIGLGEDGPTH-QPIEHVPSLRLIPNLSVWRPADTI 498 (663)
T ss_dssp EEEEE-EGGGHHHHHHHHHH-HHHT--------TCCCEEEEECCSGGGCTTCTTT-CCSSHHHHHHTSTTCEEECCCSHH
T ss_pred EEEEe-hHHHHHHHHHHHHH-HHhc--------CCCEEEEEeCCccccCCCCCCc-CCHHHHHHHhcCCCcEEEeeCCHH
Confidence 99997 77899999999975 7876 89999996 4443 68899999 544 3 999999999999999999
Q ss_pred HHHHHHHHHHh-cCCCEEEeeccccccCCCCCCCcc---ccccCCceEEeec--CCcEEEEEechhHHHHHHHHHHHhhC
Q 015415 236 NAKGLMKAAIR-SENPVILFEHVLLYNLKERIPDEE---YICNLEEAEMVRP--GEHVTILTYSRMRYHVMQAAKTLVNK 309 (407)
Q Consensus 236 e~~~~~~~a~~-~~~Pv~ir~~r~~y~~~~~v~~~~---~~~~~Gk~~vl~e--G~dv~Iia~G~~~~~al~Aa~~L~~~ 309 (407)
|++.++++|++ .++|++||++|...+ .+++++ +.++.|+ +++++ |+|++||++|+|++.|++|++.|+++
T Consensus 499 e~~~~l~~A~~~~~~Pv~ir~~r~~~p---~~~~~~~~~~~~~~G~-~vl~~~~g~dvtiia~G~~v~~al~Aa~~L~~~ 574 (663)
T 3kom_A 499 ETMIAWKEAVKSKDTPSVMVLTRQNLM---PVVQTQHQVANIARGG-YLVKDNPDAKLTIVATGSEVELAVKVANEFEKK 574 (663)
T ss_dssp HHHHHHHHHHHCSSCCEEEECCSSEEC---CCCCCHHHHHHHTTTC-EEEECCTTCSCEEEECTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCEEEEccCccCC---CcCccccchhcccCce-EEEEecCCCCEEEEEecHHHHHHHHHHHHHHhc
Confidence 99999999999 799999998886432 233222 3466774 67777 79999999999999999999999999
Q ss_pred CCCceEEEecccccCchhh--HHHHHhcC-CcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCH--
Q 015415 310 GYDPEVIDIRSLKPFDLYT--IGNSIKKT-HRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYA-- 384 (407)
Q Consensus 310 Gi~v~VI~~~~l~Pfd~~~--l~~~~~~~-~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~-- 384 (407)
||+++|||++||+|||++. +++++.++ ..++++|++.. .||.+.+ . ......+|+ |.|+.++
T Consensus 575 Gi~~~Vi~~~si~p~D~~~~~~~~~vl~~~~~~v~vE~~~~-~g~~~~~----g-------G~~~~~igi-d~Fg~sg~~ 641 (663)
T 3kom_A 575 GIKLNVASIPCVEVFATQAHEYKKTVIKDDIPAVFVEMAQP-DMWYKYM----P-------KAGGEVKGI-YSFGESAPA 641 (663)
T ss_dssp TCCCEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCC-GGGGGGC----C-------TTCEEEECC-CSCCCSSCH
T ss_pred CCCeEEEEcCcCCcccccHHHHHHHhcCCCCeEEEEecCCc-ccHHHHh----c-------ccCCcEEEe-cCCcCCCCH
Confidence 9999999999999999987 45555554 46899999864 4554321 0 123467999 8999874
Q ss_pred HHHHHHcCCCHHHHHHHHHHHh
Q 015415 385 GTLEEWTVVQPAQIVTAVEQLC 406 (407)
Q Consensus 385 ~~l~~~~gl~~~~I~~~i~~ll 406 (407)
++|++++|+|++.|++++++++
T Consensus 642 ~~l~~~~Glt~e~I~~~~~~~~ 663 (663)
T 3kom_A 642 EDLFKRFGFTVENISNIVAKYV 663 (663)
T ss_dssp HHHHHHHTCSHHHHHHHHTTTC
T ss_pred HHHHHHHCcCHHHHHHHHHhhC
Confidence 7899999999999999998764
No 16
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=6.1e-49 Score=422.94 Aligned_cols=293 Identities=15% Similarity=0.124 Sum_probs=249.4
Q ss_pred CcccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccc-cchhhhh-hhCCCceEeccchhHHHHHHHHHHHhcC--C
Q 015415 83 QGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYK-VTKGLAD-KYGDLRVLDTPIAENSFTGMGIGAAMTG--L 158 (407)
Q Consensus 83 ~~~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~-~~~~~~~-~fgp~R~i~~GIaE~~~vg~A~GlA~~G--~ 158 (407)
..+++++|++++++|.++++++|+++++++|++.++++.. -+..|++ +| |+||||+||+|++|+++|+|||++| +
T Consensus 362 ~~~~~a~r~a~~~~L~~i~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~-~~R~id~gIaE~~~v~~a~GlA~~G~~~ 440 (675)
T 1itz_A 362 ESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQKDTA-EERNVRFGVREHGMGAICNGIALHSPGF 440 (675)
T ss_dssp TSCCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCCTTCT-TCCBCCCCSCHHHHHHHHHHHHTTCTTC
T ss_pred CCcchHHHHHHHHHHHHHHHhCCCEEEEeccccccccccccccccccccCC-CCCeEeecccHHHHHHHHHHHHhcCCCC
Confidence 3557899999999999999999999999999987766531 1234786 99 9999999999999999999999999 9
Q ss_pred eeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCC-CCCCCcCccchHH--HHHccCCCcEEEeeCCH
Q 015415 159 RPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGV-GRQLGAEHSQRLE--SYFQSIPGIQMVACSTP 234 (407)
Q Consensus 159 rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~-~~~~G~tHsq~~e--a~~~~iPgl~V~~P~d~ 234 (407)
|||++| |..|+.++++||++ +|++ ++||+++. ++|. .|.+|+|| |+++ ++|+++|||+|++|+|+
T Consensus 441 ~P~~~t-~~~F~~~~~~~ir~-~a~~--------~lpvv~~~t~~g~g~G~dG~tH-q~~edla~lr~iP~l~V~~Pad~ 509 (675)
T 1itz_A 441 VPYCAT-FFVFTDYMRGAMRI-SALS--------EAGVIYVMTHDSIGLGEDGPTH-QPIEHLVSFRAMPNILMLRPADG 509 (675)
T ss_dssp EEEEEE-EGGGHHHHHHHHHH-HHHH--------TCCCEEEEECCSGGGCTTCTTT-CCSSHHHHHHSSSSCEEECCCSH
T ss_pred EEEEEE-HHHHHHHHHHHHHH-HHhc--------CCCEEEEEECCccccCCCCCCc-CcHHHHHHhccCCCeEEEECCCH
Confidence 999997 66788899999986 7776 89999998 3444 47899999 6665 89999999999999999
Q ss_pred HHHHHHHHHHHhc-CCCEEEeeccccccCCCCCCCccc-cccCCceEEeec---C--CcEEEEEechhHHHHHHHHHHHh
Q 015415 235 YNAKGLMKAAIRS-ENPVILFEHVLLYNLKERIPDEEY-ICNLEEAEMVRP---G--EHVTILTYSRMRYHVMQAAKTLV 307 (407)
Q Consensus 235 ~e~~~~~~~a~~~-~~Pv~ir~~r~~y~~~~~v~~~~~-~~~~Gk~~vl~e---G--~dv~Iia~G~~~~~al~Aa~~L~ 307 (407)
+|++.++++|++. ++|++||++|...+ .++.+++ .+++| ++++++ | .|++||++|++++.|++|++.|+
T Consensus 510 ~e~~~~l~~a~~~~~~Pv~i~~~r~~~p---~~~~~~~~~~~~G-a~vl~~~~~G~~~dv~iva~G~~v~~al~Aa~~L~ 585 (675)
T 1itz_A 510 NETAGAYKVAVLNRKRPSILALSRQKLP---HLPGTSIEGVEKG-GYTISDNSTGNKPDLIVMGTGSELEIAAKAADELR 585 (675)
T ss_dssp HHHHHHHHHHHHCTTSCEEEEECSSCBC---CCTTCCHHHHTTS-SEEEEECCSTTCCSEEEEECGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcEEEEecCCCCC---CCCCccccccccC-CEEEecccCCCCCCEEEEEECHHHHHHHHHHHHHH
Confidence 9999999999997 99999999986433 2333344 47888 688888 7 89999999999999999999999
Q ss_pred hCCCCceEEEecccccCchhh--HHHHHhcC--CcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCC
Q 015415 308 NKGYDPEVIDIRSLKPFDLYT--IGNSIKKT--HRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPY 383 (407)
Q Consensus 308 ~~Gi~v~VI~~~~l~Pfd~~~--l~~~~~~~--~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~ 383 (407)
++||+++|||++|++|||++. +.+.+.++ +++|+||++.. +||++. + ..+..++|+ |.|+++
T Consensus 586 ~~Gi~v~Vv~~~~~~pld~~~~~~~~~v~~~~~~~vv~vE~~~~-~G~~~~----~--------~~~~~~ig~-d~fg~s 651 (675)
T 1itz_A 586 KEGKTVRVVSFVSWELFDEQSDEYKESVLPAAVTARISIEAGST-LGWQKY----V--------GAQGKAIGI-DKFGAS 651 (675)
T ss_dssp HTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCC-TTTHHH----H--------CSSCEEECC-CSCCCS
T ss_pred hcCCcEEEEEeccCcccccchHHHHHHHhccCCceEEEEECCcc-ccHHHh----c--------CCCceEEEe-CCCCCC
Confidence 999999999999999999986 44445544 78999999987 788853 2 234578999 898887
Q ss_pred H--HHHHHHcCCCHHHHHHHHHHH
Q 015415 384 A--GTLEEWTVVQPAQIVTAVEQL 405 (407)
Q Consensus 384 ~--~~l~~~~gl~~~~I~~~i~~l 405 (407)
+ ++|++++|+|++.|+++|+++
T Consensus 652 g~~~~l~~~~gl~~~~I~~~i~~~ 675 (675)
T 1itz_A 652 APAGTIYKEYGITVESIIAAAKSF 675 (675)
T ss_dssp SCHHHHHHHHTCSHHHHHHHHTTC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHhC
Confidence 4 679999999999999999763
No 17
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=100.00 E-value=1.5e-49 Score=426.36 Aligned_cols=290 Identities=15% Similarity=0.091 Sum_probs=248.3
Q ss_pred cccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccc-cchhhhh-hhCCCceEeccchhHHHHHHHHHHHhcC-Cee
Q 015415 84 GHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYK-VTKGLAD-KYGDLRVLDTPIAENSFTGMGIGAAMTG-LRP 160 (407)
Q Consensus 84 ~~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~-~~~~~~~-~fgp~R~i~~GIaE~~~vg~A~GlA~~G-~rp 160 (407)
.+++++|++++++|.++++++|+++++++|++.+++++. .+..|++ +| |+||||+||+|++|+++|+|||++| +||
T Consensus 346 ~~~~~~r~a~~~~L~~~~~~~p~~~~~~aDl~~s~~~~~~~~~~f~~~~~-p~R~i~~gIaE~~~~~~a~GlA~~Gg~~P 424 (651)
T 2e6k_A 346 DKPIATRAASGRALNLLAPRLPELLGGSADLTPSNNTKAEGMEDFSRANP-LGRYLHFGVREHAMGAILNGLNLHGGYRA 424 (651)
T ss_dssp CSCBCHHHHHHHHHHHHGGGCTTEEEEESSCHHHHTCSCTTCCBCBTTBT-TCCEEECCSCHHHHHHHHHHHHHHSSCEE
T ss_pred CccHHHHHHHHHHHHHHHhhCCCEEEEeCccccccccccccccccCccCC-CCceEecCcCHHHHHHHHHHHHHcCCCEE
Confidence 447899999999999999999999999999987776643 4567887 99 9999999999999999999999998 999
Q ss_pred EEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCC-CCCCCcCccchHH--HHHccCCCcEEEeeCCHHH
Q 015415 161 IVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGV-GRQLGAEHSQRLE--SYFQSIPGIQMVACSTPYN 236 (407)
Q Consensus 161 ~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~-~~~~G~tHsq~~e--a~~~~iPgl~V~~P~d~~e 236 (407)
|++| |..|+.++++||+. .|++ ++||++++ +.|. .|.+|+|| |+++ +++|++|||+|++|+|++|
T Consensus 425 ~~~t-~~~F~~~~~~air~-~a~~--------~lpvv~~~t~~g~g~G~dG~tH-q~~edla~lr~iP~l~V~~Pad~~E 493 (651)
T 2e6k_A 425 YGGT-FLVFSDYMRPAIRL-AALM--------GVPTVFVFTHDSIALGEDGPTH-QPVEHLMSLRAMPNLFVIRPADAYE 493 (651)
T ss_dssp EEEE-EGGGGGGSHHHHHH-HHHH--------TCCCEEEEECCSGGGCTTCTTT-CCSSHHHHHHTSTTCEEECCSSHHH
T ss_pred EEEe-HHHHHHHHHHHHHH-HHhc--------CCCEEEEEECCccccCCCcCcc-ccHHHHHHhcCCCCcEEEecCCHHH
Confidence 9997 45566788899875 7776 89999996 4444 57799999 7775 8999999999999999999
Q ss_pred HHHHHHHHHhc-CCCEEEeeccccccCCCCCCCccc-cccCCceEEeecC--CcEEEEEechhHHHHHHHHHHHhhCCCC
Q 015415 237 AKGLMKAAIRS-ENPVILFEHVLLYNLKERIPDEEY-ICNLEEAEMVRPG--EHVTILTYSRMRYHVMQAAKTLVNKGYD 312 (407)
Q Consensus 237 ~~~~~~~a~~~-~~Pv~ir~~r~~y~~~~~v~~~~~-~~~~Gk~~vl~eG--~dv~Iia~G~~~~~al~Aa~~L~~~Gi~ 312 (407)
++.++++|++. ++|++||++|..++ .++.+++ .++.| ++++++| +|++||++|++++.|++|++.|+++||+
T Consensus 494 ~~~~l~~A~~~~~~Pv~i~~~r~~~~---~~~~~~~~~~~~G-~~vl~~g~~~dv~iva~G~~v~~al~Aa~~L~~~Gi~ 569 (651)
T 2e6k_A 494 TFYAWLVALRRKEGPTALVLTRQAVP---LLSPEKARGLLRG-GYVLEDVEEPQGVLVATGSEVHLALRAQALLREKGVR 569 (651)
T ss_dssp HHHHHHHHHHCCSSCEEEECCSSCBC---CCCHHHHGGGGGS-SEEEECCSSCSEEEEECTTHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCCEEEEEeCCCCC---CCCcchhhhhcCC-CEEEeeCCCCCEEEEEECHHHHHHHHHHHHHHhcCCc
Confidence 99999999997 89999999987543 2332223 36677 5788887 8999999999999999999999999999
Q ss_pred ceEEEecccccCchhh---HHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCH--HHH
Q 015415 313 PEVIDIRSLKPFDLYT---IGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYA--GTL 387 (407)
Q Consensus 313 v~VI~~~~l~Pfd~~~---l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~--~~l 387 (407)
++|||++|++|||++. +.+.++.++++|++|++.. +|+++.+ + .++|+ |.|++++ ++|
T Consensus 570 ~~Vv~~~~~~p~d~~~~~~~~~v~~~~~~vv~vE~~~~-~G~~~~v--------------~-~~ig~-d~f~~sg~~~~l 632 (651)
T 2e6k_A 570 VRVVSLPSFELFAAQPEAYRKEVLPPGLPVVAVEAGAS-LGWERYA--------------H-KVVAL-DRFGASAPYPEV 632 (651)
T ss_dssp EEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCC-TTGGGTC--------------S-EEECC-CSCCCSCCTTHH
T ss_pred EEEEecCcCCccccccHHHHHHHhCcCCeEEEEeCCcc-CchHHhC--------------C-CEEEe-CCCCCCCCHHHH
Confidence 9999999999999986 5455555578999999987 7876322 3 78999 8998774 689
Q ss_pred HHHcCCCHHHHHHHHHHHh
Q 015415 388 EEWTVVQPAQIVTAVEQLC 406 (407)
Q Consensus 388 ~~~~gl~~~~I~~~i~~ll 406 (407)
++++|+|+++|+++|++++
T Consensus 633 ~~~~gl~~~~I~~~i~~~l 651 (651)
T 2e6k_A 633 YERLGFTPERVAEAFLSLV 651 (651)
T ss_dssp HHHTTCCHHHHHHHHHTTC
T ss_pred HHHhCCCHHHHHHHHHHhC
Confidence 9999999999999998864
No 18
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=100.00 E-value=6.5e-49 Score=423.03 Aligned_cols=291 Identities=15% Similarity=0.149 Sum_probs=246.2
Q ss_pred CcccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCcc-ccchhhhh------hhCCCceEeccchhHHHHHHHHHHHh
Q 015415 83 QGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSY-KVTKGLAD------KYGDLRVLDTPIAENSFTGMGIGAAM 155 (407)
Q Consensus 83 ~~~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~-~~~~~~~~------~fgp~R~i~~GIaE~~~vg~A~GlA~ 155 (407)
..+++++|++++++|.++++++|+++++++|++.+++++ +-+..|++ +| |+||||+||+|++|+++|+|||+
T Consensus 352 ~~~~~a~r~a~~~~L~~~~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~~~~~~-p~R~~d~gIaE~~~vg~a~GlA~ 430 (680)
T 1gpu_A 352 KDSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNY-SGRYIRYGIREHAMGAIMNGISA 430 (680)
T ss_dssp TSCCBCHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEECCTTTSSEET-TCCEEECCSCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHhhCCCEEEEecccccccccccccccccccccccccCC-CCceecCCccHHHHHHHHHHHHh
Confidence 356789999999999999999999999999999877764 11245777 99 99999999999999999999999
Q ss_pred cC-Ce-eEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec-CCC-CCCCCcCccchHH--HHHccCCCcEEE
Q 015415 156 TG-LR-PIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGV-GRQLGAEHSQRLE--SYFQSIPGIQMV 229 (407)
Q Consensus 156 ~G-~r-p~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~-~~~~G~tHsq~~e--a~~~~iPgl~V~ 229 (407)
+| +| ||+++ |..|+.++++||++ +|++ ++||+++.. +|. .|.+|+|| |+++ ++|+++|||+|+
T Consensus 431 ~Gg~~~P~~~~-f~~F~~~~~~air~-~a~~--------~lpvv~v~t~~g~g~G~dG~tH-q~~edla~lr~iP~l~V~ 499 (680)
T 1gpu_A 431 FGANYKPYGGT-FLNFVSYAAGAVRL-SALS--------GHPVIWVATHDSIGVGEDGPTH-QPIETLAHFRSLPNIQVW 499 (680)
T ss_dssp HCTTCEEEEEE-EHHHHGGGHHHHHH-HHHH--------TCCCEEEEECCSGGGCTTCTTT-CCSSHHHHHHTSSSCEEE
T ss_pred cCCCceEEEee-hHHHHHHHHHHHHH-HHhc--------CCCEEEEEeCCccccCCCCCcc-CCHHHHHHhcCCCCCEEE
Confidence 98 99 99986 66788899999986 7877 899999973 454 47899999 6665 999999999999
Q ss_pred eeCCHHHHHHHHHHHHhc-CCCEEEeeccccccCCCCCCCcccc-ccCCceEEeecC--CcEEEEEechhHHHHHHHHHH
Q 015415 230 ACSTPYNAKGLMKAAIRS-ENPVILFEHVLLYNLKERIPDEEYI-CNLEEAEMVRPG--EHVTILTYSRMRYHVMQAAKT 305 (407)
Q Consensus 230 ~P~d~~e~~~~~~~a~~~-~~Pv~ir~~r~~y~~~~~v~~~~~~-~~~Gk~~vl~eG--~dv~Iia~G~~~~~al~Aa~~ 305 (407)
+|+|++|++.++++|++. ++|++||++|...+ .++.+++. +++| .+++++| .|++||++|++++.|++|++.
T Consensus 500 ~Pad~~e~~~~l~~A~~~~~~Pv~i~~~r~~~~---~~~~~~~~~~~~G-~~vl~~g~~~dvtiva~G~~v~~al~Aa~~ 575 (680)
T 1gpu_A 500 RPADGNEVSAAYKNSLESKHTPSIIALSRQNLP---QLEGSSIESASKG-GYVLQDVANPDIILVATGSEVSLSVEAAKT 575 (680)
T ss_dssp CCCSHHHHHHHHHHHHHCSSCCEEEECCSSCBC---CCTTCCHHHHTTS-CEEEECCSSCSEEEEECTHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHHHHHhCCCcEEEEecCCCCC---CCCCcchhhccCC-CEEEecCCCCCEEEEEEcHHHHHHHHHHHH
Confidence 999999999999999997 99999999986543 23333344 6788 4889988 899999999999999999999
Q ss_pred HhhCCCCceEEEecccccCchhh--HHHHHhcCC-cEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCC
Q 015415 306 LVNKGYDPEVIDIRSLKPFDLYT--IGNSIKKTH-RVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTP 382 (407)
Q Consensus 306 L~~~Gi~v~VI~~~~l~Pfd~~~--l~~~~~~~~-~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~ 382 (407)
|+++||+++|||++||+|||++. +.+++.+++ ++|+||++.. +||++++ . . ++|+ |.|+.
T Consensus 576 L~~~Gi~~~Vvd~~~l~pld~~~~~~~~sv~~~~~~~v~vE~~~~-~g~~~~v------------~--~-~~gv-~~f~~ 638 (680)
T 1gpu_A 576 LAAKNIKARVVSLPDFFTFDKQPLEYRLSVLPDNVPIMSVEVLAT-TCWGKYA------------H--Q-SFGI-DRFGA 638 (680)
T ss_dssp HHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCSSSCEEEECSSCS-TTGGGTC------------S--E-EECC-CSCCC
T ss_pred HHhcCCCEEEEEcCCCCcchhhhHHHHHHHhccCCceEEEeCCcc-ccHHHhc------------C--c-ceee-CcCCC
Confidence 99999999999999999999986 556666654 5699999986 7876432 1 1 2777 67776
Q ss_pred C--HHHHHHHcCCCHHHHHHHHHHHh
Q 015415 383 Y--AGTLEEWTVVQPAQIVTAVEQLC 406 (407)
Q Consensus 383 ~--~~~l~~~~gl~~~~I~~~i~~ll 406 (407)
+ .++|++++|+|+++|+++|++++
T Consensus 639 ~g~~~~l~~~~gl~~~~I~~~i~~~l 664 (680)
T 1gpu_A 639 SGKAPEVFKFFGFTPEGVAERAQKTI 664 (680)
T ss_dssp CSCHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 5 36799999999999999999876
No 19
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=1e-48 Score=420.84 Aligned_cols=289 Identities=15% Similarity=0.108 Sum_probs=251.0
Q ss_pred cccchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCcccc---chhhhh-hhCCCceEeccchhHHHHHHHHHHHhc-CC
Q 015415 84 GHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKV---TKGLAD-KYGDLRVLDTPIAENSFTGMGIGAAMT-GL 158 (407)
Q Consensus 84 ~~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~---~~~~~~-~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~ 158 (407)
.+++++|++++++|.++++++|+++++++|++.+++++.. +..|++ +| |+||||+||+|++|+++|+|||++ |+
T Consensus 349 ~~~~a~r~a~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~~~f~~~~~-~~R~id~GIaE~~~~~~a~GlA~~GG~ 427 (673)
T 1r9j_A 349 SSAIATRKASENCLAVLFPAIPALMGGSADLTPSNLTRPASANLVDFSSSSK-EGRYIRFGVREHAMCAILNGLDAHDGI 427 (673)
T ss_dssp CSCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCSCGGGCCCBCBTTBT-TCCEEECCSCHHHHHHHHHHHHHHSSC
T ss_pred ccchHHHHHHHHHHHHHHhhCCCEEEEeccccccccccccCcccccccccCC-CCCeEecCccHHHHHHHHHHHHhcCCC
Confidence 4578999999999999999999999999999987776520 234887 99 999999999999999999999999 69
Q ss_pred eeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCC-CCCCCcCccchHH--HHHccCCCcEEEeeCCH
Q 015415 159 RPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGV-GRQLGAEHSQRLE--SYFQSIPGIQMVACSTP 234 (407)
Q Consensus 159 rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~-~~~~G~tHsq~~e--a~~~~iPgl~V~~P~d~ 234 (407)
+||+++ |..|+.++++||++ +|++ ++||+++. ++|. .|.+|+|| |+++ ++++++||++|++|+|+
T Consensus 428 ~P~~~~-~~~F~~~~~~~ir~-~a~~--------~~pvv~~~t~~g~g~G~dG~tH-q~~edla~lr~iP~l~V~~Pad~ 496 (673)
T 1r9j_A 428 IPFGGT-FLNFIGYALGAVRL-AAIS--------HHRVIYVATHDSIGVGEDGPTH-QPVELVAALRAMPNLQVIRPSDQ 496 (673)
T ss_dssp EEEEEE-EGGGGGGGHHHHHH-HHHH--------TCCCEEEEECCSGGGCTTCTTT-CCSSHHHHHHHSTTCEEECCSSH
T ss_pred EEEEEe-hHHHHHHHHHHHHH-HHhc--------CCCEEEEEECCccCcCCCCccc-CCHHHHHHHcCCCCCEEEeCCCH
Confidence 999997 66777899999987 7876 89999997 3454 57899999 7665 89999999999999999
Q ss_pred HHHHHHHHHHHhc-CCCEEEeeccccccCCCCCCCccc-cccCCceEEeecC--CcEEEEEechhHHHHHHHHHHHhhCC
Q 015415 235 YNAKGLMKAAIRS-ENPVILFEHVLLYNLKERIPDEEY-ICNLEEAEMVRPG--EHVTILTYSRMRYHVMQAAKTLVNKG 310 (407)
Q Consensus 235 ~e~~~~~~~a~~~-~~Pv~ir~~r~~y~~~~~v~~~~~-~~~~Gk~~vl~eG--~dv~Iia~G~~~~~al~Aa~~L~~~G 310 (407)
+|++.++++|++. ++|++||++|..++ .++.+.+ .+++| ++++++| .|++||++|+++++|++|++.|+++
T Consensus 497 ~e~~~~l~~a~~~~~~Pv~i~~~r~~~~---~~~~~~~~~~~~G-a~vl~~g~~~dv~lia~G~~v~~al~Aa~~L~~~- 571 (673)
T 1r9j_A 497 TETSGAWAVALSSIHTPTVLCLSRQNTE---PQSGSSIEGVRHG-AYSVVDVPDLQLVIVASGSEVSLAVDAAKALSGE- 571 (673)
T ss_dssp HHHHHHHHHHHHCTTCCEEEECCSSEEC---CCTTCCHHHHHTS-CEEEECCTTCSEEEEECGGGHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCC---CCCCcccccccCC-CEEEeeCCCCCEEEEEechhHHHHHHHHHHHHhc-
Confidence 9999999999997 89999999987543 2333344 47788 6889988 8999999999999999999999999
Q ss_pred CCceEEEecccccCchhh---HHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCH--H
Q 015415 311 YDPEVIDIRSLKPFDLYT---IGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYA--G 385 (407)
Q Consensus 311 i~v~VI~~~~l~Pfd~~~---l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~--~ 385 (407)
|+++|||++|++|||++. +.+++++++++|+||++.. +|+++.+ ++. +|+ |.|++++ +
T Consensus 572 i~~~Vv~~~sl~pld~~~~~~i~~~~~~~~~vv~vE~~~~-~g~~~~v--------------~~~-~g~-d~f~~sg~~~ 634 (673)
T 1r9j_A 572 LRVRVVSMPCQELFDAQPDTYRQAVLPAGVPVVSVEAYVS-FGWEKYS--------------HAH-VGM-SGFGASAPAG 634 (673)
T ss_dssp CCEEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCC-TTGGGTC--------------SEE-ESC-SSCCCSSCHH
T ss_pred CCEEEEeCCCCchhhcccHHHHHHHhccCCeEEEEeCCCc-cchHHhc--------------Cce-EEe-ccCCCCCCHH
Confidence 999999999999999986 8889999999999999986 7876422 233 999 8888774 7
Q ss_pred HHHHHcCCCHHHHHHHHHHHh
Q 015415 386 TLEEWTVVQPAQIVTAVEQLC 406 (407)
Q Consensus 386 ~l~~~~gl~~~~I~~~i~~ll 406 (407)
+|++++|+|++.|+++|++++
T Consensus 635 ~L~~~~g~~~~~I~~~i~~~l 655 (673)
T 1r9j_A 635 VLYKKFGITVEEVVRTGRELA 655 (673)
T ss_dssp HHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHH
Confidence 899999999999999999876
No 20
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=100.00 E-value=2.3e-45 Score=403.98 Aligned_cols=306 Identities=18% Similarity=0.222 Sum_probs=256.7
Q ss_pred ccchHHHHHHHHHHHHhhhCCCEEEEeCCCCC--------------CCCccccchhhhhhhCCCceEeccchhHHHHHHH
Q 015415 85 HELLLFEALREGLEEEMDRDPHVCVMGEDVGH--------------YGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMG 150 (407)
Q Consensus 85 ~~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~--------------~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A 150 (407)
+.++|..+++.+|.+++++|++|+++++|++. .+|.|..+.+|.++|||+||+|+||+|++++|+|
T Consensus 589 ~~~dw~~~e~~al~~l~~~~~~V~~~g~Dv~~gTfs~rh~v~~d~~~g~~~~~l~~l~~~~gp~rv~ds~IaE~~~vg~a 668 (933)
T 2jgd_A 589 KLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFE 668 (933)
T ss_dssp SCBCHHHHHHHHHHHHHTTTCCEEEEETTTTTCTTSCCCCSEECSSSSCEECGGGCSCTTCCCEEEECCCSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEECCccCCcchhhhhhhcccccCCceeechHHHHHHcCCCeEEECCcCHHHHHHHH
Confidence 35789999999999999999999999999986 3455677889999999999999999999999999
Q ss_pred HHHHhcCCe--eEEEecchhHHH---HHHHHHHHhh-hhhchhcCCcccccEEEEecCCCCCCCCcCccch-HHHHH--c
Q 015415 151 IGAAMTGLR--PIVEGMNMGFLL---LAFNQISNNC-GMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHSQR-LESYF--Q 221 (407)
Q Consensus 151 ~GlA~~G~r--p~~~t~~~~f~~---ra~dqi~~~~-a~~~~~~gg~~~lpvvi~~~~G~~~~~G~tHsq~-~ea~~--~ 221 (407)
+|+|++|.+ |+++.+|++|++ |++|||++++ +++. .++|||++.+.|..| .|++||+. +|.++ +
T Consensus 669 ~G~A~~G~~~lpv~e~qf~dF~~~AQra~DQii~~~~ak~~------~~~~vv~~l~~G~~g-~G~~Hss~~~E~~l~~~ 741 (933)
T 2jgd_A 669 YGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWG------RMCGLVMLLPHGYEG-QGPEHSSARLERYLQLC 741 (933)
T ss_dssp HHHHHHCTTSEEEEEC-CGGGGGGGHHHHHHTTTTHHHHHC------CCCCCEEEEECCCSS-SCTTSSCCCHHHHHHTC
T ss_pred HHHHhcCCCCCCEEEEEEhhhhcccHHHHHHHHHHHHHHHc------cCCCEEEEEeCCCCC-CCcccccchHHHHHHHh
Confidence 999999998 999888999987 9999999988 7642 278999999877544 48888654 77766 4
Q ss_pred cCCCcEEEeeCCHHHHHHHHHHHH-hc-CCCEEEeeccccccCCCCCC------CccccccCCceEEeecCCcE--EEEE
Q 015415 222 SIPGIQMVACSTPYNAKGLMKAAI-RS-ENPVILFEHVLLYNLKERIP------DEEYICNLEEAEMVRPGEHV--TILT 291 (407)
Q Consensus 222 ~iPgl~V~~P~d~~e~~~~~~~a~-~~-~~Pv~ir~~r~~y~~~~~v~------~~~~~~~~Gk~~vl~eG~dv--~Iia 291 (407)
++|||+|++|+|+.|++.++++++ +. ++|++|+++|.+|+.+..++ +..+.+++|++++++ |+|+ +|++
T Consensus 742 ~~pnm~V~~Pst~~e~~~lLr~a~~~~~~~Pvii~~pk~l~r~~~~~~~~~~~~~~~f~~~ig~~~~~~-g~dV~~vI~~ 820 (933)
T 2jgd_A 742 AEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGTFLPAIGEIDELD-PKGVKRVVMC 820 (933)
T ss_dssp CTTCCEEECCCSHHHHHHHHHHHHHSSCCCCEEEEECSGGGGCTTCCBCHHHHHHCCCCSEECCCSCCC-GGGCCEEEEE
T ss_pred CCCCeEEEecCCHHHHHHHHHHHHHhcCCCcEEEEecchhccCCCCcCCccccCCCceeecCCcceEee-cCcceEEEEE
Confidence 669999999999999999999985 64 89999999998877543333 234667789988887 8889 6667
Q ss_pred echhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCC---cEEEEecCccccchHHHHHHHHHhccccCCC
Q 015415 292 YSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTH---RVLIVEECMRTGGIGASLTAAITENFHDYLD 368 (407)
Q Consensus 292 ~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~---~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~ 368 (407)
+|.+...+++|++.|+++ +++|||+++|+|||.+.|.+++++++ +||+|||+...||+|++|++.+.+..+. .
T Consensus 821 ~G~v~~~l~aa~~~l~~~--~v~VIdl~~l~Pld~e~i~~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~~~~~~--~ 896 (933)
T 2jgd_A 821 SGKVYYDLLEQRRKNNQH--DVAIVRIEQLYPFPHKAMQEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPF--G 896 (933)
T ss_dssp CTTHHHHHHHHHHHTTCC--SEEEEEECEEESCCHHHHHHHHGGGTTCCEEEEEEEEETTSTTHHHHHHHHHTTSCT--T
T ss_pred chHHHHHHHHHHHHcccC--CeEEEEeeccCCCCHHHHHHHHHhCCCCceEEEEecCCCcCCHHHHHHHHHHHhccc--C
Confidence 777766677777888765 89999999999999999999999998 8999999999999999999999886431 3
Q ss_pred CCeEEeecCCCCCCCHHHHHHHcCCCHHHHHHHHH
Q 015415 369 APIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVE 403 (407)
Q Consensus 369 ~~v~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~ 403 (407)
.++.++|.+|.+.|... +++.+....+.|++++.
T Consensus 897 ~~v~~vg~~d~~~pa~g-~~~~h~~~~~~i~~~a~ 930 (933)
T 2jgd_A 897 ASLRYAGRPASASPAVG-HMSVHQKQQQDLVNDAL 930 (933)
T ss_dssp CEEEEEEECCCSSSSCS-CHHHHHHHHHHHHHHHH
T ss_pred CceEEEecCCcCCCCcC-CHHHHHHHHHHHHHHHh
Confidence 68999999999998643 34445567888887764
No 21
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=100.00 E-value=2e-45 Score=402.40 Aligned_cols=292 Identities=18% Similarity=0.236 Sum_probs=242.0
Q ss_pred HHHhhhCCCEEEEeCCCCCC--------------CCccccchhh------hhhhCCCceEeccchhHHHHHHHHHHHhcC
Q 015415 98 EEEMDRDPHVCVMGEDVGHY--------------GGSYKVTKGL------ADKYGDLRVLDTPIAENSFTGMGIGAAMTG 157 (407)
Q Consensus 98 ~~l~~~d~~vvvi~aDl~~~--------------~g~~~~~~~~------~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G 157 (407)
.+++++|++|+++++|++.+ +|.|..+.+| .++++|+||+|+||+|++++|+|+|+|+.|
T Consensus 528 ~~l~~~~~~V~~~G~Dv~~~Tfs~rh~v~~d~~~g~~~~~~~~l~~~~~~~~~~~p~Rv~ds~IsE~~~vG~a~G~A~~G 607 (868)
T 2yic_A 528 GSLIAEGKLVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGN 607 (868)
T ss_dssp HHHHHTTCEEEEEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHHC
T ss_pred HHHHhcCCCEEEEcCcCCccchhhcchhccccCCCceecchhhhcccccchhhcCCcEEEECCccHHHHHHHHHHHHccC
Confidence 36799999999999999874 6778888999 776669999999999999999999999999
Q ss_pred --CeeEEEecchhHHHHH---HHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCCcCccch-HHHHH--ccCCCcEEE
Q 015415 158 --LRPIVEGMNMGFLLLA---FNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHSQR-LESYF--QSIPGIQMV 229 (407)
Q Consensus 158 --~rp~~~t~~~~f~~ra---~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G~tHsq~-~ea~~--~~iPgl~V~ 229 (407)
.+|+++.+|++|++++ +||++++.. ++|++ ++|||++.+.|..| +|++||++ +|.++ +++|||+|+
T Consensus 608 ~~~~~i~eaqf~dF~~~AQ~~~DQ~i~~~~---~k~~~--~~~vvi~~p~G~~G-~Gp~Hs~~~~E~~l~l~~~pnm~V~ 681 (868)
T 2yic_A 608 PDAMVLWEAQFGDFVNGAQSIIDEFISSGE---AKWGQ--LSDVVLLLPHGHEG-QGPDHTSGRIERFLQLWAEGSMTIA 681 (868)
T ss_dssp TTSEEEEECSSGGGGGGGHHHHHHTTTTHH---HHHCC--CCCCEEEEECCCSS-SCTTSSCCCHHHHHHHCCTTSCEEE
T ss_pred CCCceEEEEehHHHHhhHHHHHHHHHHHHH---HHhCC--CCCEEEEecCCCCC-CChhhcCCcHHHHHhcCCCCCCEEE
Confidence 5778899999999887 999998752 34444 78999999866554 99999887 78666 999999999
Q ss_pred eeCCHHHHHHHHHHHHhcC--CCEEEeeccccccCCCCCCCc------cccccCCceEE---eecCCcE--EEEEechhH
Q 015415 230 ACSTPYNAKGLMKAAIRSE--NPVILFEHVLLYNLKERIPDE------EYICNLEEAEM---VRPGEHV--TILTYSRMR 296 (407)
Q Consensus 230 ~P~d~~e~~~~~~~a~~~~--~Pv~ir~~r~~y~~~~~v~~~------~~~~~~Gk~~v---l~eG~dv--~Iia~G~~~ 296 (407)
+|+|+.|++.++++++..+ +|+||++||.+|+....+++. .|..++|++.+ +++|+|+ +||++|.+
T Consensus 682 ~Ps~p~~~~~lLr~a~~~~~~~Pvii~~pk~llR~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~g~dv~r~Ii~~G~~- 760 (868)
T 2yic_A 682 MPSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDRNKVTRLLLTSGKI- 760 (868)
T ss_dssp CCCSHHHHHHHHHHHHHSSCCCCEEEEECSGGGGCTTSCBCHHHHHSCCCCSEECCHHHHTSSCCGGGCCEEEEECSTH-
T ss_pred EeCCHHHHHHHHHHHHhcCCCCcEEEEechHHhCCCCCCCCccccCCCCceecCCcceeecccccCCceeEEEEEecHH-
Confidence 9999999999999988764 999999999988754433321 23337898887 7889999 99999999
Q ss_pred HHHHHHHHHHhhCC-CCceEEEecccccCchhhHHHHHhcCCc---EEEEecCccccchHHHHHHHHHhccccCCCCCeE
Q 015415 297 YHVMQAAKTLVNKG-YDPEVIDIRSLKPFDLYTIGNSIKKTHR---VLIVEECMRTGGIGASLTAAITENFHDYLDAPIV 372 (407)
Q Consensus 297 ~~al~Aa~~L~~~G-i~v~VI~~~~l~Pfd~~~l~~~~~~~~~---vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~ 372 (407)
..++++++ +++| ++++|||+++|+|||.++|.+++++|++ ||+|||+..+||+|++|++.+.+. +..++.|+.
T Consensus 761 ~~~l~aa~--~~~g~i~v~VIdl~~l~Pld~~~i~~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~e~-~~~l~~~v~ 837 (868)
T 2yic_A 761 YYELAARK--AKENREDVAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEI-LPDHFTGLK 837 (868)
T ss_dssp HHHHHHHH--HHHTCTTEEEEEECEEESCCHHHHHHHHHTCTTCCEEEEEEEEETTSTTHHHHHHHHHHH-CHHHHTTCE
T ss_pred HHHHHHHH--HhCCCCCEEEEEeeecCCCCHHHHHHHHHhcCCCceEEEEEeCCCCCCcHHHHHHHHHHH-hhhcCCCeE
Confidence 67776666 6678 9999999999999999999999999987 999999999999999999999884 222346899
Q ss_pred EeecCCCCCCCHHHHHHHcCCCHHHHHH
Q 015415 373 CLSSQDVPTPYAGTLEEWTVVQPAQIVT 400 (407)
Q Consensus 373 ~ig~~d~~~~~~~~l~~~~gl~~~~I~~ 400 (407)
++|.+|.+.|.....+.+. ...+.|++
T Consensus 838 ~vg~~d~~~p~~g~~~~h~-~~~~~~~~ 864 (868)
T 2yic_A 838 RISRRAMSAPSSGSSKVHA-VEQQEILD 864 (868)
T ss_dssp EEEECCCSSSSCSCHHHHH-HHHHHHHH
T ss_pred EeccCCcCCCCCCCHHHHH-HHHHHHHH
Confidence 9999999999643333322 23444443
No 22
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=1.1e-44 Score=405.11 Aligned_cols=280 Identities=19% Similarity=0.238 Sum_probs=238.7
Q ss_pred HHHHHhhhCCCEEEEeCCCCCC--------------CCccccchhh------hhhhCCCceEeccchhHHHHHHHHHHHh
Q 015415 96 GLEEEMDRDPHVCVMGEDVGHY--------------GGSYKVTKGL------ADKYGDLRVLDTPIAENSFTGMGIGAAM 155 (407)
Q Consensus 96 ~L~~l~~~d~~vvvi~aDl~~~--------------~g~~~~~~~~------~~~fgp~R~i~~GIaE~~~vg~A~GlA~ 155 (407)
++-+++++|++|+++|+|++.. +|.|..+.+| .++++|+||+|+||+|++++|+|+|+|+
T Consensus 771 a~~~ll~~~~~V~l~GeDv~rgtfs~rh~v~~d~~~g~~~~~l~~l~~~~~~~~~~~p~rv~ds~IsE~~~vg~a~G~A~ 850 (1113)
T 2xt6_A 771 ALGSLIAEGKLVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSV 850 (1113)
T ss_dssp HHHHHHHTTCEEEEEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEcccCCCccchhcchheecccCCceecchhccccccccchhcCCcEEEECCCCHHHHHHHHHHHHh
Confidence 3445699999999999999863 5677888999 7766699999999999999999999999
Q ss_pred cC--CeeEEEecchhHHHHH---HHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCCcCccch-HHHHH--ccCCCcE
Q 015415 156 TG--LRPIVEGMNMGFLLLA---FNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHSQR-LESYF--QSIPGIQ 227 (407)
Q Consensus 156 ~G--~rp~~~t~~~~f~~ra---~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G~tHsq~-~ea~~--~~iPgl~ 227 (407)
.| .+|+++.+|++|++++ +||++++.. ++|++ ++|||++.+.|..| +|++||++ +|+++ +++|||+
T Consensus 851 ~G~~~~~i~Eaqf~dF~~~aQ~~~DQ~i~~~~---~k~~~--~~~vv~~lp~G~~G-~G~~Hs~~~~E~~l~l~~~pnm~ 924 (1113)
T 2xt6_A 851 GNPDAMVLWEAQFGDFVNGAQSIIDEFISSGE---AKWGQ--LSDVVLLLPHGHEG-QGPDHTSGRIERFLQLWAEGSMT 924 (1113)
T ss_dssp HCTTSEEEEECSSGGGGGGGHHHHHHTTTTHH---HHHCC--CCCCEEEEECCCSS-SCTTSSCCCHHHHHHHCCTTSCE
T ss_pred cCCCCceEEEEEEHHHHhhhHHHHHHHHHHHH---HHhCC--CCCEEEEeCCCCCC-CChhhhcccHHHHHhcCCCCCcE
Confidence 99 6778899999999887 999998763 34554 78999999866554 99999887 78766 9999999
Q ss_pred EEeeCCHHHHHHHHHHHHhcC--CCEEEeeccccccCCCCCCCc------cccccCCceEE---eecCCcE--EEEEech
Q 015415 228 MVACSTPYNAKGLMKAAIRSE--NPVILFEHVLLYNLKERIPDE------EYICNLEEAEM---VRPGEHV--TILTYSR 294 (407)
Q Consensus 228 V~~P~d~~e~~~~~~~a~~~~--~Pv~ir~~r~~y~~~~~v~~~------~~~~~~Gk~~v---l~eG~dv--~Iia~G~ 294 (407)
|++|+|+.|++.+++.++..+ +|+||++||.+|+....+++. .|..++|++++ +++|+|+ +|||+|.
T Consensus 925 V~~Ps~~~~~~~lLr~a~~~~~~~Pvii~~pk~L~R~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~g~dv~r~iv~~G~ 1004 (1113)
T 2xt6_A 925 IAMPSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDRNKVTRLLLTSGK 1004 (1113)
T ss_dssp EECCSSHHHHHHHHHHHHHSSCCCCEEEEECSGGGSCSSSCBCHHHHHSCCCCSEECCHHHHTSCCCSTTCCEEEEECST
T ss_pred EEecCCHHHHHHHHHHHHhccCCCCEEEEechHHhCCCCCCCcccccCCCCccccCCcceeeccccCccccCEEEEEECH
Confidence 999999999999999988754 999999999998765443321 23337898887 7899999 9999999
Q ss_pred hHHHHHHHHHHHhhCC-CCceEEEecccccCchhhHHHHHhcCCc---EEEEecCccccchHHHHHHHHHhccccCCCCC
Q 015415 295 MRYHVMQAAKTLVNKG-YDPEVIDIRSLKPFDLYTIGNSIKKTHR---VLIVEECMRTGGIGASLTAAITENFHDYLDAP 370 (407)
Q Consensus 295 ~~~~al~Aa~~L~~~G-i~v~VI~~~~l~Pfd~~~l~~~~~~~~~---vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~ 370 (407)
| +.++++++ +++| ++++|||+++|+|||.++|.+++++|++ ||+|||+..+||+|++|++.+.+. +..++.|
T Consensus 1005 ~-~~~l~aa~--~~~g~i~v~VIdl~~l~Pld~~~i~~~~~k~~~~~~vv~veE~~~~gG~gs~v~~~l~e~-~~~l~~~ 1080 (1113)
T 2xt6_A 1005 I-YYELAARK--AKENREDVAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEI-LPDHFTG 1080 (1113)
T ss_dssp H-HHHHHHHH--HHHTCTTEEEEEESEEESCCHHHHHHHHTTCTTCCEEEEEEEEETTSTTHHHHHHHHHHH-SHHHHTT
T ss_pred H-HHHHHHHH--HhCCCCCEEEEEeeeecCCCHHHHHHHHHhCCCCceEEEEecCCCCCCcHHHHHHHHHHH-hhhcCCC
Confidence 9 77777766 5678 9999999999999999999999999988 999999999999999999999884 2223468
Q ss_pred eEEeecCCCCCCCHH
Q 015415 371 IVCLSSQDVPTPYAG 385 (407)
Q Consensus 371 v~~ig~~d~~~~~~~ 385 (407)
+.++|.+|.+.|+..
T Consensus 1081 ~~~vg~~d~~~p~~g 1095 (1113)
T 2xt6_A 1081 LKRISRRAMSAPSSG 1095 (1113)
T ss_dssp CEEEEECCCSSSSCS
T ss_pred eEEEccCCcCCCCCC
Confidence 999999999999643
No 23
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=100.00 E-value=1.3e-41 Score=372.80 Aligned_cols=298 Identities=14% Similarity=0.114 Sum_probs=239.3
Q ss_pred ccchHHHHHHHHHHHHhhhC---CCEEEEeCCCCC---------CCCccc-cchhhh-----------hhhCCCceEecc
Q 015415 85 HELLLFEALREGLEEEMDRD---PHVCVMGEDVGH---------YGGSYK-VTKGLA-----------DKYGDLRVLDTP 140 (407)
Q Consensus 85 ~~~~~r~a~~~~L~~l~~~d---~~vvvi~aDl~~---------~~g~~~-~~~~~~-----------~~fgp~R~i~~G 140 (407)
+++++|++|+++|.++++++ ++||++++|+.. +++++. -...|. +.| |+||||+|
T Consensus 490 ~~~atr~afg~~L~~l~~~~~~~~~iV~i~pd~~~~~G~~dl~~S~~i~~~~~~~f~~~d~~~~~~~~e~~-~~R~~d~G 568 (886)
T 2qtc_A 490 KEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDE-KGQILQEG 568 (886)
T ss_dssp SCBCHHHHHHHHHHHHTTCTTTTTTEEEEESSCSGGGTCHHHHHHHCBBCC-----------------CBT-TCCBEECC
T ss_pred CcchHHHHHHHHHHHHHhhcccCCcEEEEcCccccccCcccccccccccccCCcccccccchhhhhhhhcC-CCceeeec
Confidence 56889999999999999998 999999999653 122210 012343 678 99999999
Q ss_pred chhHHH-H---HHHHHHHhcC--CeeEEEecchhH-HHHHHHHHHHhhhhhchhcCCcccccEEEEecCC--CCCCCCcC
Q 015415 141 IAENSF-T---GMGIGAAMTG--LRPIVEGMNMGF-LLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGG--VGRQLGAE 211 (407)
Q Consensus 141 IaE~~~-v---g~A~GlA~~G--~rp~~~t~~~~f-~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G--~~~~~G~t 211 (407)
|+|+++ + ++|+|+|++| ++||+.+ |+.| ++|++|||+++++++ +.++++....+ ..+++|+|
T Consensus 569 IaE~~a~~~~~g~a~GlA~~G~~~~P~~~~-ys~F~~qRa~Dqi~~~~d~~--------~~~v~l~~~~~~~~~g~dG~t 639 (886)
T 2qtc_A 569 INELGAGCSWLAAATSYSTNNLPMIPFYIY-YSMFGFQRIGDLCWAAGDQQ--------ARGFLIGGTSGRTTLNGEGLQ 639 (886)
T ss_dssp SCHHHHHHHHHHHHTHHHHTSCCCEEEEEE-EGGGSHHHHHHHHHHHHHTT--------CCCEEEEESCSTTTSTTTCTT
T ss_pred cCchhhhhHHHHHHHHHHhcCCCceEEEEE-ehHHHHHHHHHHHHHHHHHh--------cCCEEEEEecCcccCCCCCCc
Confidence 999995 5 7999999999 8999875 5556 899999999999887 67888877543 34789999
Q ss_pred ccchH-HHHHccCCCcEEEeeCCHHHHHHHHHHHHhc-CCC----EEEeecccc--ccCCCCCCCcc-ccccCCceEEee
Q 015415 212 HSQRL-ESYFQSIPGIQMVACSTPYNAKGLMKAAIRS-ENP----VILFEHVLL--YNLKERIPDEE-YICNLEEAEMVR 282 (407)
Q Consensus 212 Hsq~~-ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~-~~P----v~ir~~r~~--y~~~~~v~~~~-~~~~~Gk~~vl~ 282 (407)
|++.. .++++++||++|+.|+|+.|++.++++|++. ++| +++++++.. +.. +.++++. +.+ +|++++++
T Consensus 640 Hq~~~~~a~lr~iPnl~V~~Pada~E~~~~l~~al~~~~gP~~e~v~i~~~r~~~~~~~-p~~~~~~~~~~-~gga~vlr 717 (886)
T 2qtc_A 640 HEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMYGEKQENVYYYITTLNENYHM-PAMPEGAEEGI-RKGIYKLE 717 (886)
T ss_dssp TCCSCHHHHHTTSTTEEEECCSSHHHHHHHHHHHHHHHHSTTCCCCEEEEECCSCCBCC-CCCCTTCHHHH-HHTCEEEE
T ss_pred cCCcchHHHHhhCCCCEEEecCCHHHHHHHHHHHHHhcCCCCCceEEEEEeCCccccCC-CCCCcchhhhc-cCceEEEE
Confidence 95523 4999999999999999999999999999986 679 999988753 311 2333322 334 78999999
Q ss_pred cC----CcEEEEEechhHHHHHHHHHHHhhC-CCCceEEEecccccCchhh-------------------HHHHHhcCCc
Q 015415 283 PG----EHVTILTYSRMRYHVMQAAKTLVNK-GYDPEVIDIRSLKPFDLYT-------------------IGNSIKKTHR 338 (407)
Q Consensus 283 eG----~dv~Iia~G~~~~~al~Aa~~L~~~-Gi~v~VI~~~~l~Pfd~~~-------------------l~~~~~~~~~ 338 (407)
+| .|++||++|+++++|++|++.|+++ ||+++|||++|++|||.+. +.+.+.. +.
T Consensus 718 ~g~~~~~dVtLia~G~~v~~al~AAe~L~~e~GI~a~Vvd~~sl~pLD~e~i~~~kt~rl~p~~~~~~~~~e~~l~~-~~ 796 (886)
T 2qtc_A 718 TIEGSKGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHPLETPRVPYIAQVMND-AP 796 (886)
T ss_dssp EECCSSEEEEEEECGGGHHHHHHHHHHHHHHHCEEEEEEECSCHHHHHHHHHHHHHHHHHCTTSCCCCCHHHHHCCS-SC
T ss_pred ecCCCCCCEEEEeCcHHHHHHHHHHHHHhhhhCCceEEEECCcCcccchHHHHHhhhcccCccccccHHHHHHhcCC-CC
Confidence 87 7999999999999999999999999 9999999999999999875 4444444 56
Q ss_pred EEEEecCccccchHHHHHHHHHhccccCCC-CCeEEeecCCCCCCC--HHHHHHHcCCCHHHHHHHHHHHh
Q 015415 339 VLIVEECMRTGGIGASLTAAITENFHDYLD-APIVCLSSQDVPTPY--AGTLEEWTVVQPAQIVTAVEQLC 406 (407)
Q Consensus 339 vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~-~~v~~ig~~d~~~~~--~~~l~~~~gl~~~~I~~~i~~ll 406 (407)
+|++|++.. |+++.+..++ . .++..+|+ |.|+.+ .++|++++|+|++.|++++++++
T Consensus 797 vVa~ed~~~--g~~~~~~~~~--------~~~~~~~lG~-D~Fg~sg~~~~L~~~~Gld~e~Iv~~a~~~L 856 (886)
T 2qtc_A 797 AVASTDYMK--LFAEQVRTYV--------PADDYRVLGT-DGFGRSDSRENLRHHFEVDASYVVVAALGEL 856 (886)
T ss_dssp EEEECSSCT--HHHHTTGGGC--------CSSCEEEECC-CSCCCCCCHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred EEEEEeccc--chHHHHHHHc--------CCCCeEEEEe-CCCCCCCCHHHHHHHcCCCHHHHHHHHHHHH
Confidence 788888765 5665554332 3 57889999 899887 47899999999999999998876
No 24
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=100.00 E-value=2.6e-37 Score=334.07 Aligned_cols=307 Identities=10% Similarity=0.032 Sum_probs=239.2
Q ss_pred chHHHHHHHHHHHHhhhCCC-EEEEeCCCCCCCCccccchhh----hhh-hC-C--------CceEeccchhHHHHHHHH
Q 015415 87 LLLFEALREGLEEEMDRDPH-VCVMGEDVGHYGGSYKVTKGL----ADK-YG-D--------LRVLDTPIAENSFTGMGI 151 (407)
Q Consensus 87 ~~~r~a~~~~L~~l~~~d~~-vvvi~aDl~~~~g~~~~~~~~----~~~-fg-p--------~R~i~~GIaE~~~vg~A~ 151 (407)
...+.+++++|.++++++|+ ++++++|+..|+.+..+.+.. ... +. | +|||+ ||+|++|+++++
T Consensus 429 ~~atra~g~~L~~l~~~~p~~~vv~sADl~~Sn~t~~f~~~t~~~~~~~~~~~P~d~~~~~~GR~i~-GI~Eh~M~gia~ 507 (845)
T 3ahc_A 429 VEAPRALGAYCRDIIKNNPDSFRIFGPDETASNRLNATYEVTDKQWDNGYLSGLVDEHMAVTGQVTE-QLSEHQCEGFLE 507 (845)
T ss_dssp ECTHHHHHHHHHHHHHHSTTTEEEEESSCTTTTTCGGGGGTCCEECCSCCCCTTTCCSEESSCSEEE-CSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCCcEEEEecCCCccccHHHHHhhcccccccccccCCcccccCCCCcEee-eecHHHHHHHHH
Confidence 34567788999999999999 999999998877654322220 011 21 4 89999 999999999999
Q ss_pred HHHhcCCeeEEEecchhHH--HHHHHH----HHHhhhhhchhcCCcccc-cEEEEec-CCC-CCCCCcCccch--HHH--
Q 015415 152 GAAMTGLRPIVEGMNMGFL--LLAFNQ----ISNNCGMLHYTSGGQFTI-PIVIRGP-GGV-GRQLGAEHSQR--LES-- 218 (407)
Q Consensus 152 GlA~~G~rp~~~t~~~~f~--~ra~dq----i~~~~a~~~~~~gg~~~l-pvvi~~~-~G~-~~~~G~tHsq~--~ea-- 218 (407)
|+|+.|..||+.++..|+. .|+++| ||+.++.+.|+. ++ +++++.. .|. .|.+|+|| |+ ++.
T Consensus 508 Glal~G~~~f~~t~atFl~~~~~a~~q~akwiR~a~a~~~wr~----~~~~v~~v~Th~si~~GeDGpTH-Q~~e~~d~l 582 (845)
T 3ahc_A 508 AYLLTGRHGIWSSYESFVHVIDSMLNQHAKWLEATVREIPWRK----PISSVNLLVSSHVWRQDHNGFSH-QDPGVTSLL 582 (845)
T ss_dssp HHHHTTCEEEEEEEHHHHGGGHHHHHHHHHHHHHHHHHCTTSC----CCBCEEEEEESCGGGCTTTCGGG-CCCTHHHHH
T ss_pred HHHhcCCCCceecchhhhchhhhHHHHHHHHHHhhHHhhhhcc----cCCceEEEEeCCceeecCCCCCC-CCcHHHHHH
Confidence 9999999999998655443 899999 998844442221 33 4666653 444 58999999 66 443
Q ss_pred HHc---cCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEee-ccccccCCCCCCCccc---cccCCceEEe---ec--C--
Q 015415 219 YFQ---SIPGIQMVACSTPYNAKGLMKAAIRSENPVILFE-HVLLYNLKERIPDEEY---ICNLEEAEMV---RP--G-- 284 (407)
Q Consensus 219 ~~~---~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir~-~r~~y~~~~~v~~~~~---~~~~Gk~~vl---~e--G-- 284 (407)
.++ .+||++|+.|+|+.|+..+++.|++.++|++++. +|... +.+++.++ .+..|++.+. ++ |
T Consensus 583 ~~~r~~~iPn~~V~~PaDanet~~a~~~al~~~~~~~v~v~sRq~~---p~~~~~~~a~~~~~~G~~v~~~as~d~~g~~ 659 (845)
T 3ahc_A 583 INKTFNNDHVTNIYFATDANMLLAISEKCFKSTNKINAIFAGKQPA---PTWVTLDEARAELEAGAAEWKWASNAENNDE 659 (845)
T ss_dssp GGGCCTTCCCEEEEECCSHHHHHHHHHHHHHCBSCEEEEECCCSCE---EECSCHHHHHHHHHHSEEECTTTCCCSSTTT
T ss_pred HHhhccCCCCeEEEeCCCHHHHHHHHHHHHHcCCCeEEEEecCCCC---CccCCchhhhhhhcCCeEEEEeecccccCCC
Confidence 333 7899999999999999999999999888777765 77532 23443333 3567877666 45 5
Q ss_pred CcEEEEEechh-HHHHHHHHHHHhhCCCCceEEEeccc---ccCchhhHHHHHhcCCcEEEEecCcc--ccchHHHHHHH
Q 015415 285 EHVTILTYSRM-RYHVMQAAKTLVNKGYDPEVIDIRSL---KPFDLYTIGNSIKKTHRVLIVEECMR--TGGIGASLTAA 358 (407)
Q Consensus 285 ~dv~Iia~G~~-~~~al~Aa~~L~~~Gi~v~VI~~~~l---~Pfd~~~l~~~~~~~~~vvvvEe~~~--~GGlGs~I~~~ 358 (407)
.|++||++|+. +.+|++|++.|+++||+++|||+.+| +|.|++.+....+.++.|+++|+|.. .||+++.|++.
T Consensus 660 ~DVvLiAtGsev~~EAL~AA~~L~~~GI~vRVVsm~~lf~lqp~~~~~~~ls~~~~~~l~T~e~h~i~~~gGlgsaV~el 739 (845)
T 3ahc_A 660 VQVVLASAGDVPTQELMAASDALNKMGIKFKVVNVVDLLKLQSRENNDEALTDEEFTELFTADKPVLFAYHSYAQDVRGL 739 (845)
T ss_dssp CSEEEEEESHHHHHHHHHHHHHHHHTTCCEEEEEECBGGGGSCTTTCTTSCCHHHHHHHHCSSSCEEEEESSCHHHHHHH
T ss_pred CCEEEEEeccHHHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccCHHHhCcEeecCCcceeeecCcHHHHHHH
Confidence 89999999965 56699999999999999999999999 66666555445666788999999986 69999999999
Q ss_pred HHhccccCCCCCeEEeecCCCCCCC--HHHHHHHcCCCHHHHHHHHHHHh
Q 015415 359 ITENFHDYLDAPIVCLSSQDVPTPY--AGTLEEWTVVQPAQIVTAVEQLC 406 (407)
Q Consensus 359 l~e~~~~~~~~~v~~ig~~d~~~~~--~~~l~~~~gl~~~~I~~~i~~ll 406 (407)
+.++. ...++.++|++| ++.+ ..+|..++|+|.+.|++++++++
T Consensus 740 l~~r~---~~~~l~v~G~~d-~G~tgtp~eLl~~~gld~~~Iv~~a~~~l 785 (845)
T 3ahc_A 740 IYDRP---NHDNFHVVGYKE-QGSTTTPFDMVRVNDMDRYALQAAALKLI 785 (845)
T ss_dssp TTTST---TGGGEEEECCCS-CCCSCCHHHHHHTTTCSHHHHHHHHHHHH
T ss_pred HHhCC---CCceEEEEeccC-CCCCCCHHHHHHHhCcCHHHHHHHHHHHc
Confidence 98762 134799999998 6654 57899999999999999999875
No 25
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=99.95 E-value=3.7e-29 Score=253.60 Aligned_cols=283 Identities=16% Similarity=0.161 Sum_probs=99.4
Q ss_pred chHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhh---hhCCCceEeccchhHHHHHHHHHHHhcCCeeEEE
Q 015415 87 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLAD---KYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVE 163 (407)
Q Consensus 87 ~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~---~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~ 163 (407)
++-.+|+..++.+ .+.+++..-+-.. ++.. .+.|.+ ++ ..+|+++. +|++++++|.|+|++|.||+++
T Consensus 23 ~~GneAva~~~~~---ag~~~v~~yPgtP-~t~i---~~~l~~~~~~~-g~~~i~~e-~E~~a~~~a~Gaa~aG~r~~~~ 93 (395)
T 1yd7_A 23 IQGDEAIARAAIL---AGCRFYAGYPITP-ASEI---FEAMALYMPLV-DGVVIQME-DEIASIAAAIGASWAGAKAMTA 93 (395)
T ss_dssp EEHHHHHHHHHHH---HTCCEEEECCBTT-TBCH---HHHHHHHGGGG-TCEEEECS-CHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEHHHHHHHHHHH---cCCCEEEEEECcc-hHHH---HHHHHHhhhhc-CcEEEEeC-CHHHHHHHHHHHHHhCCcEEEE
Confidence 4566777777654 3556666544332 2222 244443 56 47899998 9999999999999999999999
Q ss_pred ecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCC----CCCcCccchHHHHHccCC--CcEEEeeCCHHHH
Q 015415 164 GMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGR----QLGAEHSQRLESYFQSIP--GIQMVACSTPYNA 237 (407)
Q Consensus 164 t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~----~~G~tHsq~~ea~~~~iP--gl~V~~P~d~~e~ 237 (407)
+++++| .+++|||.+ ++. .++|+|++...+... .....|++.+++++.+.| ++.++.|+|++|+
T Consensus 94 ts~~G~-~~~~d~l~~-aa~--------~~~P~Vi~~~~~~~~~~g~~~~~~~sd~~~~~~~~~g~~g~~vl~p~~~qea 163 (395)
T 1yd7_A 94 TSGPGF-SLMQENIGY-AVM--------TETPVVIVDVQRSGPSTGQPTLPAQGDIMQAIWGTHGDHSLIVLSPSTVQEA 163 (395)
T ss_dssp EETTHH-HHHTTTCC-------------CCCCEEEEEEC--------------------------CCCCEEECCCSHHHH
T ss_pred eCchHH-HHHHHHHHH-HHh--------cCCCEEEEEeeCCCCCCCCCcccchhHHHHHHhccCCCcceEEEeCCCHHHH
Confidence 866554 569999975 343 289999987543221 222345556667777766 9999999999999
Q ss_pred HHHHHHHH----hcCCCEEEeeccccccCCC--------CCC----------C---ccccc--cC--------Cc-----
Q 015415 238 KGLMKAAI----RSENPVILFEHVLLYNLKE--------RIP----------D---EEYIC--NL--------EE----- 277 (407)
Q Consensus 238 ~~~~~~a~----~~~~Pv~ir~~r~~y~~~~--------~v~----------~---~~~~~--~~--------Gk----- 277 (407)
++++.+|+ +.+.||++++++.++.... .+. + .+|.. +. |.
T Consensus 164 ~~l~~~A~~lA~~~~~PVi~~~~~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~ 243 (395)
T 1yd7_A 164 FDFTIRAFNLSEKYRTPVILLTDAEVGHMRERVYIPNPDEIEIINRKLPRNEEEAKLPFGDPHGDGVPPMPIFGKGYRTY 243 (395)
T ss_dssp HHHHHHHHHHHHHHTSEEEEEECHHHHHCEEEEEECCGGGSCCCCCC---------------------------------
T ss_pred HHHHHHHHHHHHHHCCCEEEEcchhHhCeeceecCCChHHhhhhcccccCCCcccccCcccCCCCCCCCCccCCCCceeE
Confidence 99999999 4689999998754322100 000 0 01111 10 00
Q ss_pred ----------------------------------------e-EEeecCCcEEEEEechhHHHHHHHHHHHhhCCCCceEE
Q 015415 278 ----------------------------------------A-EMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVI 316 (407)
Q Consensus 278 ----------------------------------------~-~vl~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI 316 (407)
. +..++|+|++||+||+++..+++|++.|+++|++++||
T Consensus 244 ~~~~~h~e~g~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~g~dv~iva~G~~~~~~~eA~~~L~~~Gi~v~vi 323 (395)
T 1yd7_A 244 VTGLTHDEKGRPRTVDREVHERLIKRIVEKIEKNKKDIFTYETYELEDAEIGVVATGIVARSALRAVKMLREEGIKAGLL 323 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ecccccccccCcccCCHHHHHHHHHHHHHHHHHHHhhcCccEEecCCCCCEEEEEECccHHHHHHHHHHHHHcCCceEEE
Confidence 0 11246789999999999999999999999999999999
Q ss_pred EecccccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhccccCCCCCeEEeecCCCCCCCHHHHHHHcCCCHH
Q 015415 317 DIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPA 396 (407)
Q Consensus 317 ~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~gl~~~ 396 (407)
++++++|||.+.|.++++++++|+||||+. |||+++|.+.+.+. .++..+|..+ -.-++++
T Consensus 324 ~~r~~~Pld~~~i~~~~~~~~~vvvvEe~~--G~l~~~v~~~~~~~------~~~~~~gk~~-----------g~~~~~~ 384 (395)
T 1yd7_A 324 KIETIWPFDFELIERIAERVDKLYVPEMNL--GQLYHLIKEGANGK------AEVKLISKIG-----------GEVHTPM 384 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EeCeecCCCHHHHHHHHhcCCEEEEEeCCc--hHHHHHHHHHhcCC------CCeEEEeccC-----------CCcCCHH
Confidence 999999999999999999999999999997 99999999887641 2333444332 1237888
Q ss_pred HHHHHHHHHhC
Q 015415 397 QIVTAVEQLCQ 407 (407)
Q Consensus 397 ~I~~~i~~ll~ 407 (407)
.|.++++++++
T Consensus 385 ei~~~i~~~~~ 395 (395)
T 1yd7_A 385 EIFEFIRREFK 395 (395)
T ss_dssp -----------
T ss_pred HHHHHHHHhhC
Confidence 89888887763
No 26
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=99.86 E-value=1.5e-20 Score=212.92 Aligned_cols=220 Identities=17% Similarity=0.168 Sum_probs=164.4
Q ss_pred hhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec--CCCCC
Q 015415 129 DKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP--GGVGR 206 (407)
Q Consensus 129 ~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~--~G~~~ 206 (407)
+.||..+.+....+|.++++++.|+|.+|.|++++| .+..+..+.|.|.. ++.. ++|+|++.. +|.+.
T Consensus 49 ~~~G~~~~v~~~esE~aA~~aaiGAa~aGaR~~t~T-s~~Gl~lm~e~l~~-~ag~--------~~P~Vi~va~R~g~~~ 118 (1231)
T 2c42_A 49 NIFGQTLTIREMQSEAGAAGAVHGALAAGALTTTFT-ASQGLLLMIPNMYK-ISGE--------LLPGVFHVTARAIAAH 118 (1231)
T ss_dssp CTTSCCCEEEECSSHHHHHHHHHHHHHTTCCEEEEE-CHHHHHHHHHHHHH-HHHT--------TCCCEEEEEECCCCSS
T ss_pred hhcCCceEEEecCChHHHHHHHHHHHHcCChHhhhc-cHHHHHHHHHHHHH-HhCC--------CCCEEEEECCCCccCC
Confidence 346677899999999999999999999999999997 45556667788753 3333 689999874 44432
Q ss_pred --CCCcCccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----cCCCEEEeeccccccC---CCCCCC---------
Q 015415 207 --QLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIR----SENPVILFEHVLLYNL---KERIPD--------- 268 (407)
Q Consensus 207 --~~G~tHsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir~~r~~y~~---~~~v~~--------- 268 (407)
...+.|++ .++...+|+.|++|+|+||+++++..|++ ++.||+++.+..++.. .-++++
T Consensus 119 glsi~~~hsd---~~~ar~~G~~vl~pss~QEa~dl~~~Af~lAek~~~PVi~~~Dg~~~sh~~~~vev~~~~~~~~~~~ 195 (1231)
T 2c42_A 119 ALSIFGDHQD---IYAARQTGFAMLASSSVQEAHDMALVAHLAAIESNVPFMHFFDGFRTSHEIQKIEVLDYADMASLVN 195 (1231)
T ss_dssp SBCCSCCSHH---HHTTTTSSCEEEECCSHHHHHHHHHHHHHHHHHHCCCEEEEEETTTTTTCEEEEECCCHHHHHHTSC
T ss_pred CCcCCCchhh---HHHHhcCCcEEEECCCHHHHHHHHHHHHHHHHHcCCCEEEEecCcccccceeeeecCCHHHHHhhcC
Confidence 23456643 35677899999999999999999999854 6899999987643321 001111
Q ss_pred -------------ccccccCCc------------------------------------------eE-EeecCCcEEEEEe
Q 015415 269 -------------EEYICNLEE------------------------------------------AE-MVRPGEHVTILTY 292 (407)
Q Consensus 269 -------------~~~~~~~Gk------------------------------------------~~-vl~eG~dv~Iia~ 292 (407)
.+..++.|. .+ .-.+++|++||+|
T Consensus 196 ~~~~~~~~~~~~~p~~p~~~g~a~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~g~~y~~~e~~g~~dAd~vIVa~ 275 (1231)
T 2c42_A 196 QKALAEFRAKSMNPEHPHVRGTAQNPDIYFQGREAANPYYLKVPGIVAEYMQKVASLTGRSYKLFDYVGAPDAERVIVSM 275 (1231)
T ss_dssp HHHHHHHHHHSCCTTSCCEESCBCCTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSCCCCSEEEEECTTCSEEEEEC
T ss_pred hhhhhhccccccCCCCceecCCCcCcchhhhhHhhhhhhhHhhHHHHHHHHHHHHHHhcccccceeeecCCCCCEEEEEe
Confidence 000111111 12 2246899999999
Q ss_pred chhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHH-hcCCcEEEEecCccccc----hHHHHHHHHHh
Q 015415 293 SRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSI-KKTHRVLIVEECMRTGG----IGASLTAAITE 361 (407)
Q Consensus 293 G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~-~~~~~vvvvEe~~~~GG----lGs~I~~~l~e 361 (407)
|++...+++|++.|+++|++++||++++++|||.+.|.+++ +++++|+|+|+....|. |-.+|...+..
T Consensus 276 Gs~~~~~~eAv~~L~~~G~kvgvl~lr~~rPfp~~~i~~~l~~~~k~i~VvE~~~~~g~~G~pl~~dv~~al~~ 349 (1231)
T 2c42_A 276 GSSCETIEEVINHLAAKGEKIGLIKVRLYRPFVSEAFFAALPASAKVITVLDRTKEPGAPGDPLYLDVCSAFVE 349 (1231)
T ss_dssp STHHHHHHHHHHHHHTTTCCEEEEEESEEESCCHHHHHHTSCTTCCEEEEEESSCCTTCSSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCceEEEEEEEeCCCCHHHHHHHHHhcCCEEEEEECCCCCCCCcccHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999998 66799999999843332 44566666554
No 27
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=99.68 E-value=1.4e-16 Score=134.95 Aligned_cols=106 Identities=12% Similarity=0.249 Sum_probs=87.2
Q ss_pred ecCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHh
Q 015415 282 RPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITE 361 (407)
Q Consensus 282 ~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e 361 (407)
.+|+|++||+||+++..|++|++.|+++|++++||++++++|||.+.|.++++++++|+|+|++. .||++++|...+..
T Consensus 11 ~~g~dv~iv~~Gs~~~~a~eA~~~L~~~Gi~v~vi~~r~~~P~d~~~l~~~~~~~~~vvvvE~~~-~G~l~~~i~~~~~~ 89 (118)
T 3ju3_A 11 EKEADITFVTWGSQKGPILDVIEDLKEEGISANLLYLKMFSPFPTEFVKNVLSSANLVIDVESNY-TAQAAQMIKLYTGI 89 (118)
T ss_dssp CSSCSEEEEEEGGGHHHHHHHHHHHHHTTCCEEEEEECSSCSCCHHHHHHHHTTCSCCCCCCCCC-CCCHHHHHHHHHCC
T ss_pred CCCCCEEEEEECccHHHHHHHHHHHHHCCCceEEEEECeEecCCHHHHHHHHcCCCEEEEEECCC-CCcHHHHHHHHcCC
Confidence 36789999999999999999999999999999999999999999999999999999999999986 69999999875421
Q ss_pred ccccCCCCCeEEeecCCCCCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 015415 362 NFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLC 406 (407)
Q Consensus 362 ~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~ll 406 (407)
. ....+.+++.. -++++.|.+++++++
T Consensus 90 ~----~~~~i~~~~G~--------------~~~~~ei~~~i~~~~ 116 (118)
T 3ju3_A 90 D----IKNKILKYNGR--------------HMTEDEILKSAKEIL 116 (118)
T ss_dssp C----CCCCCCCBTTB--------------CCCHHHHHHHHHHHH
T ss_pred C----ceeEEeeeCCe--------------eCCHHHHHHHHHHHh
Confidence 0 01112222221 378999999988875
No 28
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=94.25 E-value=0.4 Score=50.20 Aligned_cols=152 Identities=13% Similarity=0.001 Sum_probs=89.5
Q ss_pred chHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCee-EEEec
Q 015415 87 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRP-IVEGM 165 (407)
Q Consensus 87 ~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp-~~~t~ 165 (407)
++..+++.+.|.+. .=+.++...... ...+.+.+.+.-+.=|++.+ ..|++++.+|.|.|+..-|| ++.+.
T Consensus 4 ~~~a~~lv~~L~~~---GV~~vfg~PG~~----~~~l~~al~~~~~~i~~i~~-~~E~~Aa~~A~GyAr~tgk~~v~~~t 75 (590)
T 1v5e_A 4 INIGLAVMKILESW---GADTIYGIPSGT----LSSLMDAMGEEENNVKFLQV-KHEEVGAMAAVMQSKFGGNLGVTVGS 75 (590)
T ss_dssp EEHHHHHHHHHHHT---TCCEEEECCCTT----THHHHTTSSSTTCCCEEEEC-SSHHHHHHHHHHHHHTTCCCCEEEEC
T ss_pred ccHHHHHHHHHHHc---CCCEEEEecCCc----hHHHHHHHHhcCCCCeEEee-CCHHHHHHHHHHHHHHHCCCEEEEeC
Confidence 44555665555543 445555543221 12233444332012366766 69999999999999994443 33333
Q ss_pred chhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec-CCC-CCCCCcCccchH--HHHHccCCCcEEEeeCCHHHHHHHH
Q 015415 166 NMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGV-GRQLGAEHSQRL--ESYFQSIPGIQMVACSTPYNAKGLM 241 (407)
Q Consensus 166 ~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~-~~~~G~tHsq~~--ea~~~~iPgl~V~~P~d~~e~~~~~ 241 (407)
+...+.-++.-|.+ +-+. ++|++++.. ... .-+.+ .+ |.. ..+++.+-.+ .+.+.+++++..++
T Consensus 76 sGpG~~N~~~gl~~-A~~~--------~vPll~Itg~~p~~~~g~~-~~-Q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i 143 (590)
T 1v5e_A 76 GGPGASHLINGLYD-AAMD--------NIPVVAILGSRPQRELNMD-AF-QELNQNPMYDHIAVY-NRRVAYAEQLPKLV 143 (590)
T ss_dssp TTHHHHTTHHHHHH-HHHH--------TCCEEEEEEECCGGGTTTT-CT-TCCCCHHHHHTTCSE-EEECCSGGGHHHHH
T ss_pred cChHHHHHHHHHHH-HHhc--------CCCEEEEcCCCCcccCCCC-cc-cccCHHHHHHhhccE-EEEeCCHHHHHHHH
Confidence 33444555666643 3222 799998852 111 11122 23 322 3788888877 77788999988888
Q ss_pred HHHHhc-----CCCEEEeecccc
Q 015415 242 KAAIRS-----ENPVILFEHVLL 259 (407)
Q Consensus 242 ~~a~~~-----~~Pv~ir~~r~~ 259 (407)
+.|++. ++||+| .+...
T Consensus 144 ~~A~~~A~~~~~GPV~l-iP~dv 165 (590)
T 1v5e_A 144 DEAARMAIAKRGVAVLE-VPGDF 165 (590)
T ss_dssp HHHHHHHHHTTSEEEEE-EETTG
T ss_pred HHHHHHHhcCCCceEEE-Eccch
Confidence 888762 489999 88654
No 29
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=94.23 E-value=0.71 Score=47.97 Aligned_cols=154 Identities=16% Similarity=0.028 Sum_probs=83.8
Q ss_pred cchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCC-ceEeccchhHHHHHHHHHHHhc-CCeeEEE
Q 015415 86 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDL-RVLDTPIAENSFTGMGIGAAMT-GLRPIVE 163 (407)
Q Consensus 86 ~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~-R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~ 163 (407)
+++..+++-+.|.+. .=+.++..+... ...+.+.+.+ . +. +++.+ ..|+++.-+|.|.|+. |...++.
T Consensus 20 ~~~~a~~lv~~L~~~---GV~~vfg~PG~~----~~~l~~al~~-~-~~~~~i~~-~~E~~Aa~~A~GyAr~tgkp~v~~ 89 (565)
T 2nxw_A 20 HMKLAEALLRALKDR---GAQAMFGIPGDF----ALPFFKVAEE-T-QILPLHTL-SHEPAVGFAADAAARYSSTLGVAA 89 (565)
T ss_dssp CCBHHHHHHHHHHHT---TCCCEEECCCGG----GHHHHHHHHH-H-CSSCEEEC-SSHHHHHHHHHHHHHHHTSCEEEE
T ss_pred CcCHHHHHHHHHHHc---CCCEEEECCCcc----hHHHHHHHHh-C-CCcEEEec-CcHHHHHHHHHHHHHHhCCCeEEE
Confidence 356777777777654 333344433211 1234455544 3 43 44555 6999999999999998 5433333
Q ss_pred ecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec-C--CCCCCCCcCccch--H---HHHHccCCCcEEEeeCCHH
Q 015415 164 GMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP-G--GVGRQLGAEHSQR--L---ESYFQSIPGIQMVACSTPY 235 (407)
Q Consensus 164 t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~--G~~~~~G~tHsq~--~---ea~~~~iPgl~V~~P~d~~ 235 (407)
+.+.....-++.-|.+ +-+. ++||+++.. . ...+.....|+|. + ..+++.+-.+. +...+++
T Consensus 90 ~TsGpG~~N~~~gv~~-A~~~--------~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~~~k~~-~~v~~~~ 159 (565)
T 2nxw_A 90 VTYGAGAFNMVNAVAG-AYAE--------KSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKEITVAQ-ARLDDPA 159 (565)
T ss_dssp ECTTHHHHTTHHHHHH-HHHT--------TCCEEEEEEECCTTCC--CCCC-------CHHHHHHTTSCSCE-EECCCTT
T ss_pred ECCCCCHHHHHHHHHH-HHhh--------CCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHHhhheEE-EEeCCHH
Confidence 3333344444555532 3222 799998862 1 1112222223232 3 27888887663 4445555
Q ss_pred HHHHHHHHHHh----cCCCEEEeecccc
Q 015415 236 NAKGLMKAAIR----SENPVILFEHVLL 259 (407)
Q Consensus 236 e~~~~~~~a~~----~~~Pv~ir~~r~~ 259 (407)
++...++.|++ .++||+|-.++..
T Consensus 160 ~~~~~i~~A~~~A~~~~GPV~l~iP~Dv 187 (565)
T 2nxw_A 160 KAPAEIARVLGAARAQSRPVYLEIPRNM 187 (565)
T ss_dssp THHHHHHHHHHHHHHHTCCEEEEEEGGG
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECChhh
Confidence 55555555543 4799999877543
No 30
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=93.82 E-value=1.4 Score=45.79 Aligned_cols=151 Identities=16% Similarity=0.040 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEEecc
Q 015415 88 LLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGMN 166 (407)
Q Consensus 88 ~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~~ 166 (407)
+..+++.+.|.+ .+=+.++..+... ...+.+.+.+.- .=|++.+ ..|+++..+|.|.|+. |.-+++.| +
T Consensus 4 ~~a~~l~~~L~~---~GV~~vfg~PG~~----~~~l~~al~~~~-~i~~i~~-~~E~~Aa~~A~Gyar~tg~~v~~~T-s 73 (568)
T 2wvg_A 4 TVGTYLAERLVQ---IGLKHHFAVAGDY----NLVLLDNLLLNK-NMEQVYC-CNELNCGFSAEGYARAKGAAAAVVT-Y 73 (568)
T ss_dssp EHHHHHHHHHHH---TTCSEEEECCCTT----THHHHHHHHTCT-TSEEEEC-SSHHHHHHHHHHHHHHHSCEEEEEC-T
T ss_pred CHHHHHHHHHHH---cCCCEEEeCCCCc----cHHHHHHHhccC-CceEecc-CcHHHHHHHHHHHHHhhCCeEEEEe-C
Confidence 445555555543 3445555543221 123345554321 2478887 6999999999999987 83333444 3
Q ss_pred hhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec-CCC--CCCCCcCcc-----c--hHHHHHccCCCcEEEeeCCHHH
Q 015415 167 MGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGV--GRQLGAEHS-----Q--RLESYFQSIPGIQMVACSTPYN 236 (407)
Q Consensus 167 ~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~--~~~~G~tHs-----q--~~ea~~~~iPgl~V~~P~d~~e 236 (407)
.....-++.-|.+ |+.. ++||+++.. ... .+.....|+ | ....+++.+--+ .+...++++
T Consensus 74 GpG~~N~~~gia~--A~~~-------~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~-~~~v~~~~~ 143 (568)
T 2wvg_A 74 SVGALSAFDAIGG--AYAE-------NLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAA-AEAIYTPEE 143 (568)
T ss_dssp TTTHHHHHHHHHH--HHHT-------TCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHHHTTSCSC-EEEECSGGG
T ss_pred CCCHHHHHHHHHH--Hhhh-------CCCEEEEeCCCChhHhccCcceeeeccccchHHHHHHHHhhEeE-EEEeCCHHH
Confidence 3444446666653 3332 799998862 111 111112232 2 234889988877 555667777
Q ss_pred HHHHHHHHHh----cCCCEEEeeccc
Q 015415 237 AKGLMKAAIR----SENPVILFEHVL 258 (407)
Q Consensus 237 ~~~~~~~a~~----~~~Pv~ir~~r~ 258 (407)
+...++.|++ .++||+|-.+..
T Consensus 144 ~~~~l~~A~~~A~~~~GPV~l~iP~d 169 (568)
T 2wvg_A 144 APAKIDHVIKTALREKKPVYLEIACN 169 (568)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEEGG
T ss_pred HHHHHHHHHHHHHhCCCCEEEEechh
Confidence 7666666654 479999976654
No 31
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=93.75 E-value=0.39 Score=50.19 Aligned_cols=153 Identities=13% Similarity=-0.020 Sum_probs=90.2
Q ss_pred chHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEEec
Q 015415 87 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGM 165 (407)
Q Consensus 87 ~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~ 165 (407)
++..+++.+.|.+ .+=+.++...... ...+.+.+.+.- .=|++.+ ..|+++..+|.|.|+. |...++.+.
T Consensus 12 ~~~a~~l~~~L~~---~GV~~vfg~PG~~----~~~l~~al~~~~-~i~~i~~-~~E~~Aa~~A~Gyar~tg~p~v~~~T 82 (590)
T 1ybh_A 12 RKGADILVEALER---QGVETVFAYPGGA----SMEIHQALTRSS-SIRNVLP-RHEQGGVFAAEGYARSSGKPGICIAT 82 (590)
T ss_dssp EEHHHHHHHHHHT---TTCCEEEECCCGG----GHHHHHHHHHCS-SCEECCC-SSHHHHHHHHHHHHHHHSSCEEEEEC
T ss_pred ccHHHHHHHHHHH---cCCCEEEEcCCCc----hHHHHHHHhccC-CccEEee-CCHHHHHHHHHHHHHHHCCCEEEEec
Confidence 4555666655543 3444555443211 123445554321 2477776 5999999999999998 544443333
Q ss_pred chhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec-CCC-CCCCCcCccchHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 015415 166 NMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGV-GRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKA 243 (407)
Q Consensus 166 ~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~-~~~~G~tHsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~ 243 (407)
+.....-++.-|.+ +-+. ++||+++.. ... .-+.|..+......+++.+-.+ .+...+++++..+++.
T Consensus 83 sGpG~~N~~~gv~~-A~~~--------~vPll~itg~~~~~~~g~~~~Q~~d~~~~~~~~~k~-~~~v~~~~~i~~~l~~ 152 (590)
T 1ybh_A 83 SGPGATNLVSGLAD-ALLD--------SVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKH-NYLVMDVEDIPRIIEE 152 (590)
T ss_dssp TTHHHHTTHHHHHH-HHHH--------TCCEEEEEEECCGGGTTTTCTTCCCHHHHHGGGSSE-EEECCCGGGHHHHHHH
T ss_pred cCchHHHHHHHHHH-HHhh--------CCCEEEEeCcCCccccCCCcccccCHHHHHHHHhCe-EEecCCHHHHHHHHHH
Confidence 33444445555532 2222 799998852 111 1122222211234788988877 5667888999999998
Q ss_pred HHhc-----CCCEEEeeccc
Q 015415 244 AIRS-----ENPVILFEHVL 258 (407)
Q Consensus 244 a~~~-----~~Pv~ir~~r~ 258 (407)
|++. ++||+|-.+..
T Consensus 153 A~~~a~~~~~GPV~l~iP~d 172 (590)
T 1ybh_A 153 AFFLATSGRPGPVLVDVPKD 172 (590)
T ss_dssp HHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHhhCCCceEEEEeCcc
Confidence 8873 58999976653
No 32
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=93.72 E-value=1.2 Score=46.13 Aligned_cols=152 Identities=12% Similarity=-0.011 Sum_probs=86.7
Q ss_pred chHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEEec
Q 015415 87 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGM 165 (407)
Q Consensus 87 ~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~ 165 (407)
++..+++.+.|.+. +=+.++..+... ...+.+.+.+.- .=|++.+ ..|+++..+|.|.|+. | ..++.+.
T Consensus 3 ~~~a~~l~~~L~~~---GV~~vfg~PG~~----~~~l~~al~~~~-~i~~v~~-~~E~~Aa~~A~Gyar~tg-~~v~~~T 72 (566)
T 2vbi_A 3 YTVGMYLAERLVQI---GLKHHFAVAGDY----NLVLLDQLLLNK-DMKQIYC-CNELNCGFSAEGYARSNG-AAAAVVT 72 (566)
T ss_dssp CBHHHHHHHHHHHH---TCSEEEECCCTT----THHHHHHHHTCT-TSEEEEC-SSHHHHHHHHHHHHHHHS-CEEEEEC
T ss_pred cCHHHHHHHHHHHc---CCCEEEeCCCCc----cHHHHHHHhcCC-CCeEEee-CcHHHHHHHHHHHHhhcC-CeEEEEe
Confidence 34556666666543 445555543221 123345554321 2377876 5999999999999987 8 5444433
Q ss_pred chhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec-CCC--CCCCCcCcc-----c--hHHHHHccCCCcEEEeeCCHH
Q 015415 166 NMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGV--GRQLGAEHS-----Q--RLESYFQSIPGIQMVACSTPY 235 (407)
Q Consensus 166 ~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~--~~~~G~tHs-----q--~~ea~~~~iPgl~V~~P~d~~ 235 (407)
+.....-++.-|.+ + +.. ++||+++.. ... .+.....|+ | ....+++.+--+ .+.+.+++
T Consensus 73 sGpG~~N~~~gia~-A-~~~-------~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~-~~~v~~~~ 142 (566)
T 2vbi_A 73 FSVGAISAMNALGG-A-YAE-------NLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLEMARQVTCA-AESITDAH 142 (566)
T ss_dssp TTTTHHHHHHHHHH-H-HHT-------TCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHHHHHTTCSE-EEEECSSS
T ss_pred CCCCHHHHHHHHHH-H-Hhh-------CCCEEEEECCCChHHhccCceeeeeccCcchHHHHHHHhhhEeE-EEEeCCHH
Confidence 44444446666653 3 332 799998862 111 111111232 2 224788888765 44455566
Q ss_pred HHHHHHHHHHh----cCCCEEEeeccc
Q 015415 236 NAKGLMKAAIR----SENPVILFEHVL 258 (407)
Q Consensus 236 e~~~~~~~a~~----~~~Pv~ir~~r~ 258 (407)
++...++.|++ .++||+|-.+..
T Consensus 143 ~~~~~l~~A~~~a~~~~GPV~l~iP~d 169 (566)
T 2vbi_A 143 SAPAKIDHVIRTALRERKPAYLDIACN 169 (566)
T ss_dssp SHHHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEechh
Confidence 65555555554 479999976654
No 33
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=93.70 E-value=1 Score=46.60 Aligned_cols=150 Identities=17% Similarity=0.077 Sum_probs=90.9
Q ss_pred chHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEEec
Q 015415 87 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGM 165 (407)
Q Consensus 87 ~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~ 165 (407)
++..+++-+.|.+. +=+.++...... ...+.+.+.+. +=|++.+ ..|+++..+|.|.|+. |...++.+.
T Consensus 4 ~~~a~~l~~~L~~~---GV~~vfg~PG~~----~~~l~~al~~~--~i~~i~~-~~E~~Aa~~A~Gyar~tg~p~v~~~T 73 (563)
T 2uz1_A 4 ITGGELVVRTLIKA---GVEHLFGLHGAH----IDTIFQACLDH--DVPIIDT-RHEAAAGHAAEGYARAGAKLGVALVT 73 (563)
T ss_dssp EEHHHHHHHHHHHH---TCCCEEECCCGG----GHHHHHHHHHH--TCCEEEC-SSHHHHHHHHHHHHHHHTSCEEEEEC
T ss_pred cCHHHHHHHHHHHC---CCCEEEECCCCc----hHHHHHHHHhc--CCcEEee-CCHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 45666666666654 333344433211 12344555433 3588887 6999999999999998 644343333
Q ss_pred chhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec-CCC-CCCCCcCccch-H--HHHHccCCCcEEEeeCCHHHHHHH
Q 015415 166 NMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGV-GRQLGAEHSQR-L--ESYFQSIPGIQMVACSTPYNAKGL 240 (407)
Q Consensus 166 ~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~-~~~~G~tHsq~-~--ea~~~~iPgl~V~~P~d~~e~~~~ 240 (407)
+.....-++.-|.+ + +.. ++||+++.. ... ..+.| .| |. . ..+++.+..+ .+...+++++...
T Consensus 74 sGpG~~N~~~~l~~-A-~~~-------~~Pll~itg~~~~~~~~~~-~~-Q~~~d~~~~~~~~tk~-~~~v~~~~~~~~~ 141 (563)
T 2uz1_A 74 AGGGFTNAVTPIAN-A-WLD-------RTPVLFLTGSGALRDDETN-TL-QAGIDQVAMAAPITKW-AHRVMATEHIPRL 141 (563)
T ss_dssp TTHHHHTTHHHHHH-H-HHH-------TCCEEEEEEECCGGGTTSC-CT-TCCCCHHHHHGGGCSE-EEECCCGGGHHHH
T ss_pred cCccHHHHHHHHHH-H-Hhc-------CCCEEEEeCCCCcccCCch-hh-hhhccHHHHhhhhhce-EEEcCCHHHHHHH
Confidence 33444555566643 3 332 799998862 111 11222 24 33 3 3788888776 5666788888888
Q ss_pred HHHHHhc-----CCCEEEeeccc
Q 015415 241 MKAAIRS-----ENPVILFEHVL 258 (407)
Q Consensus 241 ~~~a~~~-----~~Pv~ir~~r~ 258 (407)
++.|++. ++||+|-.+..
T Consensus 142 l~~A~~~a~~~~~GPV~l~iP~d 164 (563)
T 2uz1_A 142 VMQAIRAALSAPRGPVLLDLPWD 164 (563)
T ss_dssp HHHHHHHHHSSSCCCEEEEEEHH
T ss_pred HHHHHHHhcCCCCceEEEEeCHH
Confidence 8887762 58999976654
No 34
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=93.42 E-value=0.52 Score=49.02 Aligned_cols=151 Identities=13% Similarity=0.043 Sum_probs=87.6
Q ss_pred chHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEEec
Q 015415 87 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGM 165 (407)
Q Consensus 87 ~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~ 165 (407)
++..+++.+.|.+. +=+.++..+... ...+.+.+.+ - .=|++.+ ..|+++..+|.|.|+. |...++.+.
T Consensus 11 ~~~a~~l~~~L~~~---GV~~vfg~PG~~----~~~l~~al~~-~-~i~~v~~-~~E~~Aa~~A~Gyar~tg~p~v~~~T 80 (566)
T 1ozh_A 11 AHGADLVVSQLEAQ---GVRQVFGIPGAK----IDKVFDSLLD-S-SIRIIPV-RHEANAAFMAAAVGRITGKAGVALVT 80 (566)
T ss_dssp SCHHHHHHHHHHHH---TCCEEEEECCTT----THHHHHHGGG-S-SSEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEEC
T ss_pred CcHHHHHHHHHHHC---CCCEEEEcCCCc----hHHHHHHHHh-C-CCcEEEe-CCHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 34566666666554 334444443221 1233455544 2 3478877 6999999999999997 543343333
Q ss_pred chhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCCCCC-cCccchH--HHHHccCCCcEEEeeCCHHHHHHHHH
Q 015415 166 NMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLG-AEHSQRL--ESYFQSIPGIQMVACSTPYNAKGLMK 242 (407)
Q Consensus 166 ~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~~~G-~tHsq~~--ea~~~~iPgl~V~~P~d~~e~~~~~~ 242 (407)
+.....-++.-|. ++-+. ++||+++...-.....| ..| |.. ..+++.+..+ .+...+++++...++
T Consensus 81 sGpG~~N~~~~l~-~A~~~--------~vPll~itg~~~~~~~~~~~~-Q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~ 149 (566)
T 1ozh_A 81 SGPGCSNLITGMA-TANSE--------GDPVVALGGAVKRADKAKQVH-QSMDTVAMFSPVTKY-AIEVTAPDALAEVVS 149 (566)
T ss_dssp STHHHHTTHHHHH-HHHHH--------TCCEEEEEEECCTTTC-------CCCHHHHHGGGCSE-EEECCSGGGHHHHHH
T ss_pred cChHHHHHHHHHH-HHHhc--------CCCEEEEeCCCccccCCCCcc-cccCHHHHHHHHhhe-EEEcCCHHHHHHHHH
Confidence 3344444555554 23332 79999885211111112 124 333 3789988876 556677888887777
Q ss_pred HHHh----c-CCCEEEeeccc
Q 015415 243 AAIR----S-ENPVILFEHVL 258 (407)
Q Consensus 243 ~a~~----~-~~Pv~ir~~r~ 258 (407)
.|++ . ++||+|-.+..
T Consensus 150 ~A~~~A~~~r~GPV~l~iP~d 170 (566)
T 1ozh_A 150 NAFRAAEQGRPGSAFVSLPQD 170 (566)
T ss_dssp HHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHhcCCCCeEEEEeChh
Confidence 7765 2 58999976654
No 35
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=93.10 E-value=0.26 Score=50.71 Aligned_cols=114 Identities=13% Similarity=0.057 Sum_probs=71.5
Q ss_pred CceEeccchhHHHHHHHHHHHhc-CCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec-CC--CCCCCC
Q 015415 134 LRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GG--VGRQLG 209 (407)
Q Consensus 134 ~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G--~~~~~G 209 (407)
=|++.+ ..|+++..+|.|.|+. |...++.+.+...+.-++.-|.+ + +.. ++||+++.. .. ..+...
T Consensus 39 i~~i~~-~~E~~Aa~~A~Gyar~tg~~~v~~~tsGpG~~N~~~~l~~-A-~~~-------~~Pll~itg~~~~~~~~~~~ 108 (528)
T 1q6z_A 39 FRYILA-LQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGALSN-A-WNS-------HSPLIVTAGQQTRAMIGVEA 108 (528)
T ss_dssp CEEEEC-SSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTHHHHHH-H-HHT-------TCCEEEEEEECCHHHHTTTC
T ss_pred CcEEEE-CcHHHHHHHHHHHHHHhCCCEEEEEcCChHHHHHHHHHHH-H-hhc-------CCCEEEEeCCCcccccCCCc
Confidence 377776 5999999999999998 65555433343444556666643 3 332 799998852 11 112222
Q ss_pred cCccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----cCCCEEEeeccc
Q 015415 210 AEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIR-----SENPVILFEHVL 258 (407)
Q Consensus 210 ~tHsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~-----~~~Pv~ir~~r~ 258 (407)
.+|......+++.+..+ .+.+.+++++...++.|++ .++||+|-.+..
T Consensus 109 ~q~~~d~~~~~~~~~k~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 161 (528)
T 1q6z_A 109 LLTNVDAANLPRPLVKW-SYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYD 161 (528)
T ss_dssp TTCCTTGGGSSTTSCSC-EECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGG
T ss_pred ccccccHHHHHHHhhHh-hhcCCCHHHHHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 22211223788887776 5566677777777777765 257999976654
No 36
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=93.04 E-value=0.87 Score=47.09 Aligned_cols=152 Identities=13% Similarity=0.039 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEEecc
Q 015415 88 LLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGMN 166 (407)
Q Consensus 88 ~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~~ 166 (407)
+..+++.+.|.++ .=+.++...... ...+.+.+.+. +.=|++.+ ..|+++.-+|-|.|+. |...++.+.+
T Consensus 4 ~~a~~l~~~L~~~---GV~~vfg~PG~~----~~~l~dal~~~-~~i~~i~~-~~E~~Aa~~A~GyAr~tg~~~v~~~Ts 74 (549)
T 3eya_A 4 TVAAYIAKTLESA---GVKRIWGVTGDS----LNGLSDSLNRM-GTIEWMST-RHEEVAAFAAGAEAQLSGELAVCAGSC 74 (549)
T ss_dssp BHHHHHHHHHHHT---TCCEEEECCCGG----GHHHHHHHHHH-CSSEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECT
T ss_pred cHHHHHHHHHHHC---CCCEEEEcCCCc----hHHHHHHHHhc-CCCeEEEe-CChHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 3445555555433 344444433211 12344555443 12378877 5999999999999998 5433333233
Q ss_pred hhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCC--CCCCCcCccchHHHHHccCCCcEEEeeCCHHHHHHHHHHH
Q 015415 167 MGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGV--GRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAA 244 (407)
Q Consensus 167 ~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~--~~~~G~tHsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a 244 (407)
.....-++.-|.+ +-.. ++||+++...-. .-+.|..|......+++.+-.+ .+...+++++...++.|
T Consensus 75 GpG~~N~~~gi~~-A~~~--------~vPvl~itg~~~~~~~~~~~~Q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A 144 (549)
T 3eya_A 75 GPGNLHLINGLFD-CHRN--------HVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHY-CELVSSPEQIPQVLAIA 144 (549)
T ss_dssp THHHHTTHHHHHH-HHHT--------TCCEEEEEEESCGGGTTSCCTTCCCHHHHTSTTCSE-EEECCSGGGHHHHHHHH
T ss_pred CCcHhhhHHHHHH-HHhh--------CCCEEEEeCCCchhhcCCCCCCccCHHHHHhhhhhe-EEEeCCHHHHHHHHHHH
Confidence 3344445555542 3222 799998862111 1122222212234788888776 45566777777777766
Q ss_pred Hh----cCCCEEEeeccc
Q 015415 245 IR----SENPVILFEHVL 258 (407)
Q Consensus 245 ~~----~~~Pv~ir~~r~ 258 (407)
++ .++||+|-.+..
T Consensus 145 ~~~A~~~~GPV~l~iP~d 162 (549)
T 3eya_A 145 MRKAVLNRGVSVVVLPGD 162 (549)
T ss_dssp HHHHHHTTSEEEEEEEHH
T ss_pred HHHHhhCCCCEEEEeChh
Confidence 65 478999976653
No 37
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=92.92 E-value=0.43 Score=50.95 Aligned_cols=151 Identities=9% Similarity=0.091 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccc--hhHHHHHHHHHHHhcC-CeeEEEecch
Q 015415 91 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPI--AENSFTGMGIGAAMTG-LRPIVEGMNM 167 (407)
Q Consensus 91 ~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GI--aE~~~vg~A~GlA~~G-~rp~~~t~~~ 167 (407)
..+...|.+.+...++-++++.|++... .+. ...+.-.. |.+|+..|. +=-..+.+|+|++++. -+++++...-
T Consensus 464 ~~v~~~L~~~l~~~~~~~iv~~~vg~~~-~~~-~~~~~~~~-p~~~~~sg~~G~mG~~lpaAiGaalA~p~~~Vv~i~GD 540 (677)
T 1t9b_A 464 QTVIKKLSKVANDTGRHVIVTTGVGQHQ-MWA-AQHWTWRN-PHTFITSGGLGTMGYGLPAAIGAQVAKPESLVIDIDGD 540 (677)
T ss_dssp HHHHHHHHHHHHTTCSCEEEEECSSHHH-HHH-HHHSCCCS-TTCEECCCSSCCTTCHHHHHHHHHHHCTTSEEEEEEEH
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCCchHH-HHH-HHhcccCC-CCeEEeCCCcchhhchHHHHHHHHHhCCCCeEEEEEee
Confidence 3455666666654233344556665311 111 01111123 778998765 2223678888888873 3555554443
Q ss_pred hHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCC-----------C-CCcC--ccchHHHHHccCCCcEEEeeC
Q 015415 168 GFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGR-----------Q-LGAE--HSQRLESYFQSIPGIQMVACS 232 (407)
Q Consensus 168 ~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~-----------~-~G~t--Hsq~~ea~~~~iPgl~V~~P~ 232 (407)
.-++..+..|. .++.. ++|+++++ .++..+ . ...+ +.-.+..+...+ |+..+...
T Consensus 541 Gsf~~~~~eL~-ta~~~--------~l~v~ivV~NN~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~ 610 (677)
T 1t9b_A 541 ASFNMTLTELS-SAVQA--------GTPVKILILNNEEQGMVTQWQSLFYEHRYSHTHQLNPDFIKLAEAM-GLKGLRVK 610 (677)
T ss_dssp HHHHHHGGGHH-HHHHH--------TCCCEEEEEECSSCHHHHHHHHHHSTTCCCSCCCCCCCHHHHHHHT-TCEEEEEC
T ss_pred hHHhccHHHHH-HHHHh--------CCCeEEEEEeCCCchhhhhhhhhhcCCCcccCcCCCCCHHHHHHHc-CCeEEEEC
Confidence 22233344442 23332 78866554 332211 0 1111 112344455554 67777889
Q ss_pred CHHHHHHHHHHHHhcCCCEEEe
Q 015415 233 TPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 233 d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
+.+|+..+++++++.++|++|-
T Consensus 611 ~~~el~~al~~a~~~~gp~lIe 632 (677)
T 1t9b_A 611 KQEELDAKLKEFVSTKGPVLLE 632 (677)
T ss_dssp SHHHHHHHHHHHHHCSSCEEEE
T ss_pred CHHHHHHHHHHHHHCCCcEEEE
Confidence 9999999999999989999883
No 38
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=92.56 E-value=0.82 Score=48.78 Aligned_cols=150 Identities=12% Similarity=-0.028 Sum_probs=87.3
Q ss_pred chHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEEec
Q 015415 87 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGM 165 (407)
Q Consensus 87 ~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~ 165 (407)
++..+++-+.|.++ .=+.|+...... ...+.+.+.+.- .=|++.+ ..|+++..+|-|.|+. |...++.+.
T Consensus 82 ~~~a~~lv~~L~~~---GV~~vFg~PG~~----~~pl~dal~~~~-~i~~v~~-~hE~~Aa~aAdGyAr~tGkpgvv~~T 152 (677)
T 1t9b_A 82 LTGGQIFNEMMSRQ---NVDTVFGYPGGA----ILPVYDAIHNSD-KFNFVLP-KHEQGAGHMAEGYARASGKPGVVLVT 152 (677)
T ss_dssp CBHHHHHHHHHHHT---TCCEEEECCCGG----GHHHHHHTTTCS-SSEEECC-SSHHHHHHHHHHHHHHHSSCEEEEEC
T ss_pred CCHHHHHHHHHHHc---CCCEEEEecCcc----HHHHHHHHHhCC-CCeEEEe-CChHHHHHHHHHHHHHHCCCEEEEEC
Confidence 45556665555443 444455433211 122334443211 1377776 6999999999999998 643333333
Q ss_pred chhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec-CCCC-CCCCcCccchH--HHHHccCCCcEEEeeCCHHHHHHHH
Q 015415 166 NMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGVG-RQLGAEHSQRL--ESYFQSIPGIQMVACSTPYNAKGLM 241 (407)
Q Consensus 166 ~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~~-~~~G~tHsq~~--ea~~~~iPgl~V~~P~d~~e~~~~~ 241 (407)
+.....-++.-|.+ +-+. ++||+++.. .... -+.+ .+ |.. ..+++.+--+ .+...+++++...+
T Consensus 153 sGpG~~N~~~gia~-A~~d--------~vPllvItG~~~~~~~g~~-a~-Q~~Dq~~i~~~~tk~-~~~v~~~~~i~~~i 220 (677)
T 1t9b_A 153 SGPGATNVVTPMAD-AFAD--------GIPMVVFTGQVPTSAIGTD-AF-QEADVVGISRSCTKW-NVMVKSVEELPLRI 220 (677)
T ss_dssp STHHHHTTHHHHHH-HHHH--------TCCEEEEEEECCTTTTTSC-CT-TCCCHHHHTGGGSSE-EEECCSGGGHHHHH
T ss_pred CChHHHHHHHHHHH-HHHc--------CCCEEEEeCCCChhhcCCC-Cc-cccCHHHHhhhheeE-EEEcCCHHHHHHHH
Confidence 44444445555542 3222 799998852 1111 1222 23 322 3788888777 45566888988888
Q ss_pred HHHHh-----cCCCEEEeecc
Q 015415 242 KAAIR-----SENPVILFEHV 257 (407)
Q Consensus 242 ~~a~~-----~~~Pv~ir~~r 257 (407)
+.|++ .++||+|-.+.
T Consensus 221 ~~A~~~A~~grpGPV~l~lP~ 241 (677)
T 1t9b_A 221 NEAFEIATSGRPGPVLVDLPK 241 (677)
T ss_dssp HHHHHHHHSSSCCEEEEEEEH
T ss_pred HHHHHHHhhCCCceEEEEcCH
Confidence 88887 26899997664
No 39
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=92.51 E-value=0.92 Score=47.15 Aligned_cols=151 Identities=14% Similarity=-0.000 Sum_probs=89.3
Q ss_pred chHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCee-EEEec
Q 015415 87 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRP-IVEGM 165 (407)
Q Consensus 87 ~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp-~~~t~ 165 (407)
++..+++.+.|.+. +=+.++....... ...+.+.+. + =|++.+ ..|+++.-+|-|.|+..-|| ++.+.
T Consensus 12 ~~~a~~l~~~L~~~---GV~~vfg~PG~~~---~~~l~~al~---~-i~~i~~-~~E~~Aa~~A~Gyar~tg~p~v~~~T 80 (573)
T 2iht_A 12 PTAAHALLSRLRDH---GVGKVFGVVGREA---ASILFDEVE---G-IDFVLT-RHEFTAGVAADVLARITGRPQACWAT 80 (573)
T ss_dssp CCHHHHHHHHHHHT---TCCEEEECCCGGG---GTCCSCSST---T-CEEEEC-SSHHHHHHHHHHHHHHHCSCEEEEEC
T ss_pred ccHHHHHHHHHHHC---CCCEEEEecCCcc---hhHHHHHHc---C-CeEEee-CCHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 55666666666543 3344444332110 112334443 2 477776 69999999999999984444 33333
Q ss_pred chhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecC-CC-CCCCCcCccchH--HHHHccCCCcEEEeeCCHHHHHHHH
Q 015415 166 NMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPG-GV-GRQLGAEHSQRL--ESYFQSIPGIQMVACSTPYNAKGLM 241 (407)
Q Consensus 166 ~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~-G~-~~~~G~tHsq~~--ea~~~~iPgl~V~~P~d~~e~~~~~ 241 (407)
+.....-++.-|.+ +-+. ++|++++... .. ..+.+..| |.. ..+++.+..+ .+...+++++...+
T Consensus 81 sGpG~~N~~~~v~~-A~~~--------~~Pll~itg~~~~~~~~~~~~~-Q~~d~~~~~~~~~k~-~~~v~~~~~~~~~i 149 (573)
T 2iht_A 81 LGPGMTNLSTGIAT-SVLD--------RSPVIALAAQSESHDIFPNDTH-QCLDSVAIVAPMSKY-AVELQRPHEITDLV 149 (573)
T ss_dssp TTHHHHHHHHHHHH-HHHH--------TCCEEEEEEESCGGGCCTTTST-TCCCHHHHHGGGSSE-EEECCSGGGHHHHH
T ss_pred cCchHHHHHHHHHH-HHhh--------CCCEEEEcccCcccccCCcCcc-ccCCHHHHHHhHhhE-EEEcCCHHHHHHHH
Confidence 33444556666643 3333 7999988621 11 11220234 333 3889988876 55667788888888
Q ss_pred HHHHhc-----CCCEEEeecccc
Q 015415 242 KAAIRS-----ENPVILFEHVLL 259 (407)
Q Consensus 242 ~~a~~~-----~~Pv~ir~~r~~ 259 (407)
+.|++. ++||+|-.+...
T Consensus 150 ~~A~~~A~~~~~GPV~l~iP~dv 172 (573)
T 2iht_A 150 DSAVNAAMTEPVGPSFISLPVDL 172 (573)
T ss_dssp HHHHHHHTBSSCCCEEEEEEHHH
T ss_pred HHHHHHHhcCCCceEEEEecchH
Confidence 888762 489999876543
No 40
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=92.24 E-value=0.93 Score=47.51 Aligned_cols=153 Identities=11% Similarity=0.008 Sum_probs=85.1
Q ss_pred cchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEEe
Q 015415 86 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVEG 164 (407)
Q Consensus 86 ~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t 164 (407)
+++..+++.+.|.+. .=+.|+...... ...+.+.|.+.-+.=|++.+ ..|+++.-+|-|.|+. |...++.+
T Consensus 10 ~~~~a~~l~~~L~~~---GV~~vfg~PG~~----~~~l~dal~~~~~~i~~i~~-~hE~~Aa~aA~GyAr~tg~~gv~~~ 81 (603)
T 4feg_A 10 NILAGAAVIKVLEAW---GVDHLYGIPGGS----INSIMDALSAERDRIHYIQV-RHEEVGAMAAAADAKLTGKIGVCFG 81 (603)
T ss_dssp EEEHHHHHHHHHHHT---TCCEEEECCCGG----GHHHHHHHHHTTTTSEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEE
T ss_pred eeeHHHHHHHHHHHC---CCCEEEEeCCCc----hHHHHHHHHhccCCCeEEEe-cChHHHHHHHHHHHHHhCCceEEEe
Confidence 456667666666543 344455433211 12344555543112378877 5999999999999988 54333333
Q ss_pred cchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCCC--CCCcCccchH--HHHHccCCCcEEEeeCCHHHHHHH
Q 015415 165 MNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGR--QLGAEHSQRL--ESYFQSIPGIQMVACSTPYNAKGL 240 (407)
Q Consensus 165 ~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~~--~~G~tHsq~~--ea~~~~iPgl~V~~P~d~~e~~~~ 240 (407)
.+.....-++.-|. ++-+. ++||+++...-... +.+ .+ |.. ..+++.+--+. +...+++++...
T Consensus 82 TsGpG~~N~~~gia-~A~~~--------~vPvl~itG~~~~~~~~~~-~~-Q~~d~~~~~~~~tk~~-~~v~~~~~~~~~ 149 (603)
T 4feg_A 82 SAGPGGTHLMNGLY-DARED--------HVPVLALIGQFGTTGMNMD-TF-QEMNENPIYADVADYN-VTAVNAATLPHV 149 (603)
T ss_dssp CTTHHHHTTHHHHH-HHHHT--------TCCEEEEEEECCTTTTTSC-CT-TCCCCGGGGTTTCSEE-EECCCSTTHHHH
T ss_pred cCCchHHHHHHHHH-HHHHc--------CCCEEEEecCCcccccCCC-cc-ccccHHHHhhhhceEE-EEcCCHHHHHHH
Confidence 33344444555554 23222 79999885211111 112 22 322 26888777653 344455556555
Q ss_pred HHHHHh----cCCCEEEeeccc
Q 015415 241 MKAAIR----SENPVILFEHVL 258 (407)
Q Consensus 241 ~~~a~~----~~~Pv~ir~~r~ 258 (407)
++.|++ .++||+|-.+..
T Consensus 150 i~~A~~~A~~~~GPV~l~iP~d 171 (603)
T 4feg_A 150 IDEAIRRAYAHQGVAVVQIPVD 171 (603)
T ss_dssp HHHHHHHHHHHTSEEEEEEETT
T ss_pred HHHHHHHHhcCCCCEEEEeChh
Confidence 555544 589999976653
No 41
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=91.73 E-value=0.57 Score=48.64 Aligned_cols=153 Identities=10% Similarity=-0.052 Sum_probs=89.1
Q ss_pred cchHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEEe
Q 015415 86 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVEG 164 (407)
Q Consensus 86 ~~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t 164 (407)
.++..+++.+.|.++ +=+.++...... ...+.+.+.+ . .=|++.+ ..|+++.-+|-|.|+. |...++.+
T Consensus 9 ~~~~a~~l~~~L~~~---GV~~vfg~PG~~----~~~l~~al~~-~-~i~~i~~-~~E~~Aa~~A~GyAr~tg~pgv~~~ 78 (568)
T 2c31_A 9 LTDGFHVLIDALKMN---DIDTMYGVVGIP----ITNLARMWQD-D-GQRFYSF-RHEQHAGYAASIAGYIEGKPGVCLT 78 (568)
T ss_dssp EEEHHHHHHHHHHHT---TCCEEEECCCTT----THHHHHHHHH-T-TCEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEE
T ss_pred cccHHHHHHHHHHHc---CCCEEEEeCCCc----cHHHHHHHHh-C-CCcEEEe-CcHHHHHHHHHHHHHHhCCCEEEEE
Confidence 356667776666554 334444433211 1233344543 2 3578887 6999999999999999 54334333
Q ss_pred cchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecC-CC--CCC-CCcCccchHHHHHccCCCcEEEeeCCHHHHHHH
Q 015415 165 MNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPG-GV--GRQ-LGAEHSQRLESYFQSIPGIQMVACSTPYNAKGL 240 (407)
Q Consensus 165 ~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~-G~--~~~-~G~tHsq~~ea~~~~iPgl~V~~P~d~~e~~~~ 240 (407)
.+.....-++.-|.+ +-+. ++||+++... .. .+. .|..+......+++.+-.+ .+...+++++...
T Consensus 79 TsGpG~~N~~~~i~~-A~~~--------~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~-~~~v~~~~~~~~~ 148 (568)
T 2c31_A 79 VSAPGFLNGVTSLAH-ATTN--------CFPMILLSGSSEREIVDLQQGDYEEMDQMNVARPHCKA-SFRINSIKDIPIG 148 (568)
T ss_dssp CSHHHHHHHHHHHHH-HHHH--------TCCEEEEEEECCHHHHHTTCCCTTCCCHHHHSGGGSSE-EEECCSGGGHHHH
T ss_pred cCCccHHHHHHHHHH-HHhc--------CCCEEEEccCCCccccCCCCCcccccCHHHHHHhhhhe-eeecCCHHHHHHH
Confidence 344445555666642 3332 7999988521 11 111 2222211223788888776 4555677777777
Q ss_pred HHHHHh-----cCCCEEEeeccc
Q 015415 241 MKAAIR-----SENPVILFEHVL 258 (407)
Q Consensus 241 ~~~a~~-----~~~Pv~ir~~r~ 258 (407)
++.|++ .++||+|-.+..
T Consensus 149 i~~A~~~A~~~~~GPV~l~iP~d 171 (568)
T 2c31_A 149 IARAVRTAVSGRPGGVYVDLPAK 171 (568)
T ss_dssp HHHHHHHHHSSSCCEEEEEEETH
T ss_pred HHHHHHHhcCCCCceEEEeCCHH
Confidence 777765 368999976654
No 42
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=91.58 E-value=1.6 Score=45.12 Aligned_cols=149 Identities=11% Similarity=0.060 Sum_probs=83.9
Q ss_pred HHHHHHHHHhhh-CCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEEecchhH
Q 015415 92 ALREGLEEEMDR-DPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGMNMGF 169 (407)
Q Consensus 92 a~~~~L~~l~~~-d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~~~~f 169 (407)
..++.|.+.+++ .=+.|+...... ...+.+.+.+.- .=|++-+ ..|+++.-+|-|.|+. |...++.+.+...
T Consensus 9 ~~a~~lv~~L~~~GV~~vFg~PG~~----~~~l~dal~~~~-~i~~i~~-~hE~~Aa~~AdGyAr~tG~pgv~~~TsGpG 82 (556)
T 3hww_A 9 RWAAVILEALTRHGVRHICIAPGSR----STLLTLAAAENS-AFIHHTH-FDERGLGHLALGLAKVSKQPVAVIVTSGTA 82 (556)
T ss_dssp HHHHHHHHHHHTTTCCEEEECCCTT----SHHHHHHHHHCT-TCEEEEC-SCHHHHHHHHHHHHHHHCSCEEEEECSSHH
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCC----cHHHHHHHhhCC-CceEEEe-cCCcHHHHHHHHHHHhhCCCEEEEECCCcH
Confidence 345555555543 344444433211 123345554321 2267764 5999999999999998 6433333333344
Q ss_pred HHHHHHHHHHhhhhhchhcCCcccccEEEEecCCCC--CCCCcCccchHH--HHHccCCCcEEEee--CC---HHHHHHH
Q 015415 170 LLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVG--RQLGAEHSQRLE--SYFQSIPGIQMVAC--ST---PYNAKGL 240 (407)
Q Consensus 170 ~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~G~~--~~~G~tHsq~~e--a~~~~iPgl~V~~P--~d---~~e~~~~ 240 (407)
..-++.-|. ++-+. ++||+++...-.. -+.| .| |..+ .+++.+-.+....+ .+ ++++..+
T Consensus 83 ~~N~~~gia-~A~~d--------~vPll~itG~~~~~~~g~~-~~-Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~i~~~ 151 (556)
T 3hww_A 83 VANLYPALI-EAGLT--------GEKLILLTADRPPELIDCG-AN-QAIRQPGMFASHPTHSISLPRPTQDIPARWLVST 151 (556)
T ss_dssp HHTTHHHHH-HHHHH--------CCCEEEEEEECCGGGSSSS-CT-TCCCCTTTTTTCSSEEEECCCCCTTSCHHHHHHH
T ss_pred HHhhhHHHH-HHHHh--------CCCeEEEeCCCCHHHhccC-CC-ccccHHHHHhhheeEEEecCCCcccccHHHHHHH
Confidence 444555553 23222 7999988621111 1122 24 4333 68888776654443 32 3568889
Q ss_pred HHHHHhc--CCCEEEeecc
Q 015415 241 MKAAIRS--ENPVILFEHV 257 (407)
Q Consensus 241 ~~~a~~~--~~Pv~ir~~r 257 (407)
++.|+.. ++||+|-.+.
T Consensus 152 i~~A~~~~r~GPV~i~iP~ 170 (556)
T 3hww_A 152 IDHALGTLHAGGVHINCPF 170 (556)
T ss_dssp HHHHHHSCCSSCEEEEEEC
T ss_pred HHHHHhcCCCCCEEEeCCc
Confidence 9999864 5899997664
No 43
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=91.53 E-value=0.92 Score=47.01 Aligned_cols=150 Identities=11% Similarity=0.034 Sum_probs=87.5
Q ss_pred chHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEEec
Q 015415 87 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGM 165 (407)
Q Consensus 87 ~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~ 165 (407)
++..+++-+.|.++ +=+.++...... ...+.+.+.+ . .=|++.+ ..|+++.-+|-|.|+. |...++.+.
T Consensus 8 ~~~a~~l~~~L~~~---GV~~vfg~PG~~----~~~l~~al~~-~-~i~~i~~-~hE~~Aa~~A~Gyar~tg~pgv~~~T 77 (564)
T 2q28_A 8 TDGMHIIVEALKQN---NIDTIYGVVGIP----VTDMARHAQA-E-GIRYIGF-RHEQSAGYAAAASGFLTQKPGICLTV 77 (564)
T ss_dssp EEHHHHHHHHHHHT---TCCEEEECCCTT----THHHHHHHHH-T-TCEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEEC
T ss_pred CcHHHHHHHHHHHc---CCCEEEECCCcc----hHHHHHHHHh-C-CCcEEee-CCHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 45666666666543 334444433211 1233344533 2 3578887 6999999999999999 543333333
Q ss_pred chhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecC-CC--CCC-CCcCccchH--HHHHccCCCcEEEeeCCHHHHHH
Q 015415 166 NMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPG-GV--GRQ-LGAEHSQRL--ESYFQSIPGIQMVACSTPYNAKG 239 (407)
Q Consensus 166 ~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~-G~--~~~-~G~tHsq~~--ea~~~~iPgl~V~~P~d~~e~~~ 239 (407)
+.....-++.-|. ++-+. ++||+++... .. .+. .| .+ |.+ ..+++.+-.+ .+...+++++..
T Consensus 78 sGpG~~N~~~gi~-~A~~~--------~vPll~itg~~~~~~~~~~~~-~~-Q~~dq~~~~~~~tk~-~~~v~~~~~~~~ 145 (564)
T 2q28_A 78 SAPGFLNGLTALA-NATVN--------GFPMIMISGSSDRAIVDLQQG-DY-EELDQMNAAKPYAKA-AFRVNQPQDLGI 145 (564)
T ss_dssp SHHHHHHHHHHHH-HHHHH--------TCCEEEEEEECCHHHHHTTSC-CT-TCCCHHHHHGGGSSE-EEECCSGGGHHH
T ss_pred cCchHHHHHHHHH-HHHhc--------CCCEEEEeCCCCccccCCCCC-cc-ccccHHHHHHHhhhe-eeecCCHHHHHH
Confidence 4444555566664 23332 7999988521 11 111 22 23 322 3788888776 444566777777
Q ss_pred HHHHHHh-----cCCCEEEeeccc
Q 015415 240 LMKAAIR-----SENPVILFEHVL 258 (407)
Q Consensus 240 ~~~~a~~-----~~~Pv~ir~~r~ 258 (407)
.++.|++ .++||+|-.+..
T Consensus 146 ~i~~A~~~A~~~~~GPV~l~iP~d 169 (564)
T 2q28_A 146 ALARAIRVSVSGRPGGVYLDLPAN 169 (564)
T ss_dssp HHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHHHHhcCCCceEEEEcCHH
Confidence 7777765 368999976654
No 44
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=91.28 E-value=2.3 Score=44.55 Aligned_cols=152 Identities=11% Similarity=0.016 Sum_probs=89.7
Q ss_pred chHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEE-e
Q 015415 87 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVE-G 164 (407)
Q Consensus 87 ~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~-t 164 (407)
++..+++.+.|.+ ..=+.++..+... ...+.+.+.+ .+.=|++.+ ..|+++..+|.|.|+. |-+|.++ +
T Consensus 27 ~~~a~~l~~~L~~---~GV~~vfg~PG~~----~~~l~~al~~-~~~i~~i~~-~~E~~Aa~~A~GyAr~tgg~~~v~~~ 97 (616)
T 2pan_A 27 MRAVDAAMYVLEK---EGITTAFGVPGAA----INPFYSAMRK-HGGIRHILA-RHVEGASHMAEGYTRATAGNIGVCLG 97 (616)
T ss_dssp EEHHHHHHHHHHH---TTCCEEEECCCGG----GHHHHHHHHH-HCCCEEEEC-SSHHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred CcHHHHHHHHHHH---CCCCEEEECCCCc----cHHHHHHHHh-cCCCcEEee-CCHHHHHHHHHHHHHhcCCCceEEEe
Confidence 4556666666643 3445555544221 1234455544 312377766 6999999999999998 4565443 2
Q ss_pred cchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec--CCCCCCCCcCccchHHHHHccCCCcEEEeeCCHHHHHHHHH
Q 015415 165 MNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP--GGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMK 242 (407)
Q Consensus 165 ~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~--~G~~~~~G~tHsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~ 242 (407)
.+.....-++.-|. ++.+. ++|++++.. .....+.|..+......+++.+-.+. +...+++++..+++
T Consensus 98 TsGpG~~N~~~~l~-~A~~~--------~vPlvvItg~~p~~~~~~~~~Q~~d~~~~~~~~tk~~-~~v~~~~~i~~~l~ 167 (616)
T 2pan_A 98 TSGPAGTDMITALY-SASAD--------SIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKMA-VTVREAALVPRVLQ 167 (616)
T ss_dssp CSTHHHHTSHHHHH-HHHHT--------TCCEEEEEEECCGGGTTTTCTTCCCHHHHHGGGSSEE-EECCSGGGHHHHHH
T ss_pred CCCchHHHHHHHHH-HHHhc--------CCCEEEEecCCcccccCcccccccCHHHHHHHHHHhh-cccCCHHHHHHHHH
Confidence 23333444556664 33333 799998852 11111222211112247888887774 45577888888888
Q ss_pred HHHhc-----CCCEEEeecc
Q 015415 243 AAIRS-----ENPVILFEHV 257 (407)
Q Consensus 243 ~a~~~-----~~Pv~ir~~r 257 (407)
.|++. ++||+|-.+.
T Consensus 168 ~A~~~A~~~r~GPV~l~iP~ 187 (616)
T 2pan_A 168 QAFHLMRSGRPGPVLVDLPF 187 (616)
T ss_dssp HHHHHHHSSSCCCEEEEEEH
T ss_pred HHHHHHhcCCCceEEEEcch
Confidence 88863 5899997664
No 45
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=91.02 E-value=1.1 Score=46.73 Aligned_cols=151 Identities=17% Similarity=0.006 Sum_probs=85.3
Q ss_pred chHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCe-eEEEe
Q 015415 87 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLR-PIVEG 164 (407)
Q Consensus 87 ~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~r-p~~~t 164 (407)
++..+++.+.|.+. +=+.++...... ...+.+.+.+.-+.=|++.+ ..|+++.-+|-|.|+. |.. .++.|
T Consensus 4 ~~~a~~l~~~L~~~---GV~~vfg~PG~~----~~~l~~al~~~~~~i~~v~~-~hE~~Aa~~A~GyAr~tg~p~v~~~T 75 (589)
T 2pgn_A 4 KRGADLIVEALEEY---GTEQVVGFIGHT----SHFVADAFSKSHLGKRVINP-ATELGGAWMVNGYNYVKDRSAAVGAW 75 (589)
T ss_dssp EEHHHHHHHHHHHT---TCCEEEEECSGG----GHHHHHHHHTSTTSTTCBCC-SSHHHHHHHHHHHHHHHTSCCEEEEE
T ss_pred CcHHHHHHHHHHHc---CCCEEEEecCCc----hHHHHHHHHhcCCCCeEEEe-CcHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 34555555555443 334444433211 12334455432011377777 6999999999999998 533 34444
Q ss_pred cchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec-CCC-CCCCCcCccchHH--HHHccCCCcEEEeeCCHHHHHHH
Q 015415 165 MNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGV-GRQLGAEHSQRLE--SYFQSIPGIQMVACSTPYNAKGL 240 (407)
Q Consensus 165 ~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~-~~~~G~tHsq~~e--a~~~~iPgl~V~~P~d~~e~~~~ 240 (407)
..+ ...-++.-|.+ +-+. ++||+++.. ... ..+.+..| |..+ . ++.+..+ .+...+++++...
T Consensus 76 sGp-G~~N~~~gv~~-A~~~--------~vPll~itg~~~~~~~~~~~~~-Q~~d~~~-~~~~tk~-~~~v~~~~~~~~~ 142 (589)
T 2pgn_A 76 HCV-GNLLLHAAMQE-ARTG--------RIPAVHIGLNSDGRLAGRSEAA-QQVPWQS-FTPIARS-TQRVERLDKVGEA 142 (589)
T ss_dssp EGG-GGGGCHHHHHH-HHHT--------TCCEEEEEEESCGGGTTCTTCS-SCCCGGG-GTTTSSE-EEECCSGGGHHHH
T ss_pred cCc-hHHHHHHHHHH-HHhc--------CCCEEEEecCCcccccCCCCcc-cccChhh-ccccEEE-EeecCCHHHHHHH
Confidence 344 33444555532 3222 799998862 111 11222034 3332 6 8887766 5566778888888
Q ss_pred HHHHHh----c-CCCEEEeeccc
Q 015415 241 MKAAIR----S-ENPVILFEHVL 258 (407)
Q Consensus 241 ~~~a~~----~-~~Pv~ir~~r~ 258 (407)
++.|++ . ++||+|-.+..
T Consensus 143 i~~A~~~A~~~~~GPV~l~iP~d 165 (589)
T 2pgn_A 143 IHEAFRVAEGHPAGPAYVDIPFD 165 (589)
T ss_dssp HHHHHHHHTSSSCCEEEEEEETH
T ss_pred HHHHHHHHhcCCCccEEEEeCHh
Confidence 888776 2 48999976654
No 46
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=90.63 E-value=1 Score=46.86 Aligned_cols=148 Identities=16% Similarity=0.085 Sum_probs=77.9
Q ss_pred HHHHHHHHhh-hCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEEecchhHH
Q 015415 93 LREGLEEEMD-RDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGMNMGFL 170 (407)
Q Consensus 93 ~~~~L~~l~~-~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~~~~f~ 170 (407)
..+.|.+.++ ..=+.|+..+... ...+.+.|.+ .+.=|++.+ ..|+++.-+|-|.|+. |...++.+.+....
T Consensus 13 ~a~~lv~~L~~~GV~~vFg~PG~~----~~~l~dal~~-~~~i~~i~~-~hE~~Aa~aAdGyAr~tG~pgv~~~TsGpG~ 86 (578)
T 3lq1_A 13 YLAAFIEELVQAGVKEAIISPGSR----STPLALMMAE-HPILKIYVD-VDERSAGFFALGLAKASKRPVVLLCTSGTAA 86 (578)
T ss_dssp HHHHHHHHHHHTTCCEEEECCCTT----THHHHHHHHH-CSSCEEEEC-SSHHHHHHHHHHHHHHHCCCEEEEECSSHHH
T ss_pred HHHHHHHHHHHcCCCEEEECCCCc----cHHHHHHHHh-CCCceEEEe-cCcHHHHHHHHHHHHhhCCCEEEEECCchhh
Confidence 3444444443 3445555433211 1233455543 212478877 5999999999999988 64333333333444
Q ss_pred HHHHHHHHHhhhhhchhcCCcccccEEEEecC-CC-CCCCCcCccchHH--HHHccCCCcEEE--eeCCHHH----HHHH
Q 015415 171 LLAFNQISNNCGMLHYTSGGQFTIPIVIRGPG-GV-GRQLGAEHSQRLE--SYFQSIPGIQMV--ACSTPYN----AKGL 240 (407)
Q Consensus 171 ~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~-G~-~~~~G~tHsq~~e--a~~~~iPgl~V~--~P~d~~e----~~~~ 240 (407)
.-++.-|. ++ +.. ++||+++... .. .-+.| .+ |..+ .+++.+-.+... .|.+..+ +..+
T Consensus 87 ~N~~~gia-~A-~~d-------~vPll~itG~~p~~~~g~~-~~-Qe~d~~~~~~~~tk~~~~v~~~~~~~~~~~~i~~~ 155 (578)
T 3lq1_A 87 ANYFPAVA-EA-NLS-------QIPLIVLTADRPHELRNVG-AP-QAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWH 155 (578)
T ss_dssp HTTHHHHH-HH-HHT-------TCCEEEEEEECCGGGTTSS-CT-TCCCCTTTTGGGSSEEEECCCCCCSHHHHHHHHHH
T ss_pred hhhhHHHH-HH-Hhc-------CCCeEEEeCCCCHHhhcCC-CC-CCcCHhhHHhhheeeEeecCCCCCchHHHHHHHHH
Confidence 44445553 23 332 7999988621 11 11222 23 3322 677776655433 3555332 2335
Q ss_pred HHHHHhc-----CCCEEEeecc
Q 015415 241 MKAAIRS-----ENPVILFEHV 257 (407)
Q Consensus 241 ~~~a~~~-----~~Pv~ir~~r 257 (407)
++.|++. ++||+|-.+.
T Consensus 156 l~~A~~~A~~gr~GPV~l~iP~ 177 (578)
T 3lq1_A 156 GSRAVDIAMKTPRGPVHLNFPL 177 (578)
T ss_dssp HHHHHHHHHSSSCCCEEEEEEC
T ss_pred HHHHHHHhhCCCCCcEEEECcc
Confidence 5555542 7999997664
No 47
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=88.88 E-value=6.2 Score=40.65 Aligned_cols=152 Identities=14% Similarity=0.016 Sum_probs=83.2
Q ss_pred chHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEEec
Q 015415 87 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGM 165 (407)
Q Consensus 87 ~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~ 165 (407)
++..+++-+.|.++ +=+.++...... ...+.+.+.+.- .=|++.+ ..|+++.-+|.|.|+. | .+++.+.
T Consensus 4 ~~~a~~l~~~L~~~---GV~~vfg~PG~~----~~~l~~al~~~~-~i~~v~~-~~E~~Aa~~A~Gyar~tg-~~v~~~T 73 (563)
T 2vk8_A 4 ITLGKYLFERLKQV---NVNTVFGLPGDF----NLSLLDKIYEVE-GMRWAGN-ANELNAAYAADGYARIKG-MSCIITT 73 (563)
T ss_dssp EEHHHHHHHHHHHT---TCCEEEECCCGG----GHHHHHGGGGST-TCEECCC-SSHHHHHHHHHHHHHHHS-CEEEEEE
T ss_pred cCHHHHHHHHHHHc---CCCEEEEcCCcc----hHHHHHHHhhcC-CceEEcc-CchHHHHHHHHHHHHhhC-CcEEEEc
Confidence 44555555555433 444455443211 123334444321 2377776 6999999999999998 7 4444433
Q ss_pred chhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec-CCC--CCC-------CCc-CccchHHHHHccCCCcEEEeeCCH
Q 015415 166 NMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGV--GRQ-------LGA-EHSQRLESYFQSIPGIQMVACSTP 234 (407)
Q Consensus 166 ~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~--~~~-------~G~-tHsq~~ea~~~~iPgl~V~~P~d~ 234 (407)
+.....-++.-|.+ +-+. ++||+++.. ... .+. .|. .+ |....+++.+--+ .+...++
T Consensus 74 sGpG~~N~~~gia~-A~~~--------~~Pll~itg~~~~~~~~~~~~~~~~~g~~~~-q~~~~~~~~~~k~-~~~v~~~ 142 (563)
T 2vk8_A 74 FGVGELSALNGIAG-SYAE--------HVGVLHVVGVPSISAQAKQLLLHHTLGNGDF-TVFHRMSANISET-TAMITDI 142 (563)
T ss_dssp TTHHHHHHHHHHHH-HHHH--------TCCEEEEEEECCHHHHHTTCCCTTSCSSSCS-SHHHHHHHTTCSE-EEECCCT
T ss_pred CCCcHHHHHHHHHH-HHhh--------CCCEEEEECCCChHHhhcccccccccCCcch-HHHHHHhhhhEEE-EEEeCCH
Confidence 33444445566643 3222 799998862 111 011 111 12 3334788888766 3444554
Q ss_pred HHH----HHHHHHHHhcCCCEEEeecccc
Q 015415 235 YNA----KGLMKAAIRSENPVILFEHVLL 259 (407)
Q Consensus 235 ~e~----~~~~~~a~~~~~Pv~ir~~r~~ 259 (407)
+++ ..+++.|...++||+|-.+...
T Consensus 143 ~~~~~~i~~A~~~A~~~~GPV~l~iP~d~ 171 (563)
T 2vk8_A 143 ATAPAEIDRCIRTTYVTQRPVYLGLPANL 171 (563)
T ss_dssp TTHHHHHHHHHHHHHHHTSCEEEEEETTG
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEechhh
Confidence 444 4445555545799999876543
No 48
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=88.71 E-value=3.4 Score=42.47 Aligned_cols=151 Identities=16% Similarity=0.023 Sum_probs=82.4
Q ss_pred chHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhcCCeeEEEecc
Q 015415 87 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMN 166 (407)
Q Consensus 87 ~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~G~rp~~~t~~ 166 (407)
++..+++.+.|.+ ..=+.++..+... ...+.+.+.+.- .=|++.+ ..|+++..+|.|.|+..-.+++.+.+
T Consensus 5 ~~~a~~l~~~L~~---~GV~~vfg~PG~~----~~~l~~al~~~~-~i~~i~~-~~E~~A~~~A~Gyar~tg~~v~~~ts 75 (552)
T 1ovm_A 5 YCVADYLLDRLTD---CGADHLFGVPGDY----NLQFLDHVIDSP-DICWVGC-ANELNASYAADGYARCKGFAALLTTF 75 (552)
T ss_dssp CBHHHHHHHHHHH---TTCCEEEECCCGG----GHHHHHHHHHCS-SCEEEEC-SSHHHHHHHHHHHHHHHSCEEEEEET
T ss_pred cCHHHHHHHHHHH---cCCCEEEECCChh----HHHHHHHHhcCC-CceEEee-CcHHHHHHHHHHHHHhhCCcEEEEcc
Confidence 4455666655554 3445555443211 123344554321 2366666 69999999999999883255444334
Q ss_pred hhHHHHHHHHHHHhhhhhchhcCCcccccEEEEecC-CC--CCC-------CCc-CccchHHHHHccCCCcEEEeeCCHH
Q 015415 167 MGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPG-GV--GRQ-------LGA-EHSQRLESYFQSIPGIQMVACSTPY 235 (407)
Q Consensus 167 ~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~~-G~--~~~-------~G~-tHsq~~ea~~~~iPgl~V~~P~d~~ 235 (407)
.....-++.-|.+ +-+. ++|++++... .. .+. .|. .+ |....+++.+--+....+. +
T Consensus 76 GpG~~N~~~gv~~-A~~~--------~~Pll~itg~~p~~~~~~~~~~~~~~g~~~~-q~~~~~~~~~tk~~~~v~~--~ 143 (552)
T 1ovm_A 76 GVGELSAMNGIAG-SYAE--------HVPVLHIVGAPGTAAQQRGELLHHTLGDGEF-RHFYHMSEPITVAQAVLTE--Q 143 (552)
T ss_dssp THHHHHTHHHHHH-HHHT--------TCCEEEEEEECCHHHHHHTCCCTTSCSSSCC-SHHHHHTGGGCSEEEECCT--T
T ss_pred CCcHHHHHHHHHH-Hhhh--------cCCEEEEECCCCHHHHhcccccccccCCCcH-HHHHHHHHhheeEEEEEcc--c
Confidence 3444445555542 2222 7999988521 10 010 111 22 3334788887776555544 4
Q ss_pred HHHHHHHH----HHhcCCCEEEeeccc
Q 015415 236 NAKGLMKA----AIRSENPVILFEHVL 258 (407)
Q Consensus 236 e~~~~~~~----a~~~~~Pv~ir~~r~ 258 (407)
++...++. |...++||+|-.+..
T Consensus 144 ~~~~~i~~A~~~a~~~~GPV~l~iP~d 170 (552)
T 1ovm_A 144 NACYEIDRVLTTMLRERRPGYLMLPAD 170 (552)
T ss_dssp THHHHHHHHHHHHHHHTCCEEEEEEHH
T ss_pred cHHHHHHHHHHHHHhCCCCEEEEeehh
Confidence 44444444 444479999977654
No 49
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=87.91 E-value=4.2 Score=42.04 Aligned_cols=151 Identities=13% Similarity=0.006 Sum_probs=84.2
Q ss_pred chHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEEec
Q 015415 87 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGM 165 (407)
Q Consensus 87 ~~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~ 165 (407)
++..+++.+.|.+. +=+.++..+... ...+.+.+.+.- .=|++.+ ..|++++.+|.|.|+. | ..++.+.
T Consensus 25 ~~~a~~l~~~L~~~---GV~~vfg~PG~~----~~~l~~al~~~~-~i~~i~~-~~E~~A~~~A~GyAr~tG-~~v~~~t 94 (570)
T 2vbf_A 25 YTVGDYLLDRLHEL---GIEEIFGVPGDY----NLQFLDQIISRE-DMKWIGN-ANELNASYMADGYARTKK-AAAFLTT 94 (570)
T ss_dssp CBHHHHHHHHHHHT---TCCEEEECCCGG----GHHHHHHHHHCS-SCEEEEC-SSHHHHHHHHHHHHHHHS-CEEEEEE
T ss_pred CCHHHHHHHHHHHc---CCCEEEECCCcc----hHHHHHHHhcCC-CCeEECc-CcHHHHHHHHHHHHHHhC-CeEEEEc
Confidence 45666666666543 445555443221 123344454321 2367766 6999999999999966 8 4444433
Q ss_pred chhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec-CCC--CCCCCcCcc-------chHHHHHccCCCcEEEeeCCHH
Q 015415 166 NMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGV--GRQLGAEHS-------QRLESYFQSIPGIQMVACSTPY 235 (407)
Q Consensus 166 ~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~--~~~~G~tHs-------q~~ea~~~~iPgl~V~~P~d~~ 235 (407)
+.....-++.-|. ++-+. ++|++++.. ... .+.+...|+ +....+++.+.-+....+ + +
T Consensus 95 sGpG~~N~~~gi~-~A~~~--------~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~-~-~ 163 (570)
T 2vbf_A 95 FGVGELSAINGLA-GSYAE--------NLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMKMHEPVTAARTLLT-A-E 163 (570)
T ss_dssp TTHHHHHHHHHHH-HHHHT--------TCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHHHTGGGCSEEEECC-T-T
T ss_pred CCCCHHHHHHHHH-HHhhh--------CCCEEEEeCCCCHHHhhccccceeeccccchHHHHHHhhhhEEEEEEEC-c-c
Confidence 4444445666664 23222 799998852 111 111111221 112368888876654444 4 5
Q ss_pred HHHHHHHHHHh----cCCCEEEeeccc
Q 015415 236 NAKGLMKAAIR----SENPVILFEHVL 258 (407)
Q Consensus 236 e~~~~~~~a~~----~~~Pv~ir~~r~ 258 (407)
++...++.|++ .++||+|-.+..
T Consensus 164 ~~~~~l~~A~~~A~~~~GPV~l~iP~d 190 (570)
T 2vbf_A 164 NATYEIDRVLSQLLKERKPVYINLPVD 190 (570)
T ss_dssp THHHHHHHHHHHHHHHCCCEEEEEEHH
T ss_pred cHHHHHHHHHHHHhhCCCCEEEEcchh
Confidence 66555555554 579999976653
No 50
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=87.11 E-value=2.9 Score=43.68 Aligned_cols=150 Identities=14% Similarity=0.079 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccchhHHHHHHHHHHHhc-CCeeEEEecc
Q 015415 88 LLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMT-GLRPIVEGMN 166 (407)
Q Consensus 88 ~~r~a~~~~L~~l~~~d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GIaE~~~vg~A~GlA~~-G~rp~~~t~~ 166 (407)
+..+++.+.|.+ .+=+.|+..+... ...+.+.+.+.- .=|++.+ ..|+++.-+|-|.|+. |...++.+.+
T Consensus 32 ~~a~~lv~~L~~---~GV~~vFg~PG~~----~~~l~dal~~~~-~i~~i~~-~hE~~Aa~aA~GyAr~tgkpgv~~~Ts 102 (604)
T 2x7j_A 32 HYIGSFIDEFAL---SGITDAVVCPGSR----STPLAVLCAAHP-DISVHVQ-IDERSAGFFALGLAKAKQRPVLLICTS 102 (604)
T ss_dssp HHHHHHHHHHHH---HTCCEEEECCCST----THHHHHHHHHCT-TCEEEEC-SSHHHHHHHHHHHHHHHTSCEEEEECS
T ss_pred HHHHHHHHHHHH---cCCCEEEECcCcc----cHHHHHHHHhCC-CceEEEe-cChHHHHHHHHHHHHhhCCCEEEEECC
Confidence 344555555543 3445555443221 123445554321 2488887 6999999999999998 5332333323
Q ss_pred hhHHHHHHHHHHHhhhhhchhcCCcccccEEEEec-CCCC-CCCCcCccchHH--HHHccCCCcEEEeeCCHHH------
Q 015415 167 MGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGVG-RQLGAEHSQRLE--SYFQSIPGIQMVACSTPYN------ 236 (407)
Q Consensus 167 ~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~~-~~~G~tHsq~~e--a~~~~iPgl~V~~P~d~~e------ 236 (407)
.....-++.-|. ++-+. ++||+++.. .... -+.| .+ |..+ .+++.+-.+.... .++++
T Consensus 103 GpG~~N~~~gia-~A~~~--------~vPlv~ItG~~~~~~~g~~-~~-Q~~d~~~~~~~~tk~~~~v-~~~~~~~~~~~ 170 (604)
T 2x7j_A 103 GTAAANFYPAVV-EAHYS--------RVPIIVLTADRPHELREVG-AP-QAINQHFLFGNFVKFFTDS-ALPEESPQMLR 170 (604)
T ss_dssp SHHHHTTHHHHH-HHHHH--------TCCEEEEEEECCGGGSSSC-CT-TCCCCTTTTGGGSSCEEEC-CCCCCSHHHHH
T ss_pred hhHHHHHHHHHH-HHhhc--------CCCEEEEeCCCCHHHhCCC-CC-CcCcHHHHhhhheeeeeec-CCCcccchhHH
Confidence 334444455553 23222 799998862 1111 1112 23 3222 6777766653333 23332
Q ss_pred -HHHHHHHHHh-----cCCCEEEeeccc
Q 015415 237 -AKGLMKAAIR-----SENPVILFEHVL 258 (407)
Q Consensus 237 -~~~~~~~a~~-----~~~Pv~ir~~r~ 258 (407)
+...++.|++ .++||+|-.+..
T Consensus 171 ~~~~~i~~A~~~A~~~~~GPV~l~iP~d 198 (604)
T 2x7j_A 171 YIRTLASRAAGEAQKRPMGPVHVNVPLR 198 (604)
T ss_dssp HHHHHHHHHHHHHHSSSCCEEEEEEECC
T ss_pred HHHHHHHHHHHHhhCCCCCcEEEEcccC
Confidence 5555555554 368999976653
No 51
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=84.61 E-value=4.1 Score=43.57 Aligned_cols=98 Identities=15% Similarity=0.155 Sum_probs=60.2
Q ss_pred HHHHHHHHHhcC---------------CeeEEEecchhHHH--HHHHHHHHhhhhhchhcCCccccc-EEEEe-cCCCCC
Q 015415 146 FTGMGIGAAMTG---------------LRPIVEGMNMGFLL--LAFNQISNNCGMLHYTSGGQFTIP-IVIRG-PGGVGR 206 (407)
Q Consensus 146 ~vg~A~GlA~~G---------------~rp~~~t~~~~f~~--ra~dqi~~~~a~~~~~~gg~~~lp-vvi~~-~~G~~~ 206 (407)
.+++|.|+|++- -+.+++.+.-.-++ .+++.+. .++.. ++| ++++. .++. +
T Consensus 145 gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~-~A~~~--------~L~~livI~dnN~~-~ 214 (690)
T 3m49_A 145 GIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEASS-LAAHL--------QLGRLVVLYDSNDI-S 214 (690)
T ss_dssp HHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHHHHHHHH-HHHHT--------TCTTEEEEEEECSB-C
T ss_pred cHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhhhccHHHHHH-HHHHh--------CCCeEEEEEECCCe-e
Confidence 466777777762 23344444543344 4667663 45543 776 44444 3443 2
Q ss_pred CCCcCc---cchHHHHHccCCCcEEEee---CCHHHHHHHHHHHHh-cCCCEEEe
Q 015415 207 QLGAEH---SQRLESYFQSIPGIQMVAC---STPYNAKGLMKAAIR-SENPVILF 254 (407)
Q Consensus 207 ~~G~tH---sq~~ea~~~~iPgl~V~~P---~d~~e~~~~~~~a~~-~~~Pv~ir 254 (407)
-++.++ ...+...+.+. ||.++.+ .|.+++..+++.|.+ .++|++|.
T Consensus 215 i~~~~~~~~~~d~~~~~~a~-G~~~~~v~DG~d~~~l~~Al~~a~~~~~~P~lI~ 268 (690)
T 3m49_A 215 LDGDLNRSFSESVEDRYKAY-GWQVIRVEDGNDIEAIAKAIEEAKADEKRPTLIE 268 (690)
T ss_dssp SSSBGGGTCCCCHHHHHHHH-TCEEEEESCTTCHHHHHHHHHHHHHCCSSCEEEE
T ss_pred cccchhhccchhHHHHHHHc-CCcEEEEecCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 233332 23334556655 8999988 789999999999988 68999985
No 52
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=84.56 E-value=3.4 Score=43.05 Aligned_cols=111 Identities=11% Similarity=0.064 Sum_probs=64.3
Q ss_pred CCceEec---cchhHHHHHHHHHHHhcC-CeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cC-CC--
Q 015415 133 DLRVLDT---PIAENSFTGMGIGAAMTG-LRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PG-GV-- 204 (407)
Q Consensus 133 p~R~i~~---GIaE~~~vg~A~GlA~~G-~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~-G~-- 204 (407)
|.+|+.. | +=-..+++|.|++++- -+++++...-.-++..++.+. .++.. ++|++++. .+ |.
T Consensus 403 ~~~~~~~~~~g-~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~~~~~L~-ta~~~--------~l~~~ivv~NN~~~~~ 472 (590)
T 1v5e_A 403 KNMWRTSPLFA-TMGIAIPGGLGAKNTYPDRQVWNIIGDGAFSMTYPDVV-TNVRY--------NMPVINVVFSNTEYAF 472 (590)
T ss_dssp TSEEECCCSSC-CTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGHH-HHHHT--------TCCCEEEEEECSSCTT
T ss_pred CCeEEcCCCCC-cccChHHHHHHHHHhCCCCeEEEEEechHHhchHHHHH-HHHHh--------CCCCEEEEEECCchHH
Confidence 6778742 3 2234567888888773 355555444332333444442 23332 77866665 33 22
Q ss_pred CCC-C-C-------c-CccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhc---CCCEEEe
Q 015415 205 GRQ-L-G-------A-EHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRS---ENPVILF 254 (407)
Q Consensus 205 ~~~-~-G-------~-tHsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~---~~Pv~ir 254 (407)
.+. . . . .|.-.+..+.... |+..+...+++|+...++++++. ++|++|-
T Consensus 473 ~~~~q~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~~~gp~lie 534 (590)
T 1v5e_A 473 IKNKYEDTNKNLFGVDFTDVDYAKIAEAQ-GAKGFTVSRIEDMDRVMAEAVAANKAGHTVVID 534 (590)
T ss_dssp GGGTTSSSCCSCCCCCCCCCCHHHHHHHT-TSEEEEECBHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHhcCCCccccCCCCCHHHHHHHc-CCEEEEECCHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 111 0 0 0 1222344455554 67777888999999999999987 8999874
No 53
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=84.33 E-value=2.7 Score=43.28 Aligned_cols=112 Identities=16% Similarity=0.171 Sum_probs=63.9
Q ss_pred CCceEeccc--hhHHHHHHHHHHHhcC-CeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCC-
Q 015415 133 DLRVLDTPI--AENSFTGMGIGAAMTG-LRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQ- 207 (407)
Q Consensus 133 p~R~i~~GI--aE~~~vg~A~GlA~~G-~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~- 207 (407)
|.+|+..+- +=-..+++|.|++++. -+++++...-.-++..++.+. .++.. ++|++++. .++..+.
T Consensus 396 ~~~~~~~~~~g~mG~~l~~AiGaala~~~~~vv~i~GDGs~~~~~~~L~-ta~~~--------~l~~~ivv~nN~~~g~~ 466 (549)
T 3eya_A 396 KRRLLGSFNHGSMANAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFL-SVVQM--------KLPVKIVVFNNSVLGFV 466 (549)
T ss_dssp SCEEECCTTTCCTTCHHHHHHHHHHHSTTSCEEEEEEHHHHHHTGGGHH-HHHHT--------TCCCEEEEEECSBCCCC
T ss_pred CCcEEeCCCCchhhhHHHHHHHHHHhCCCCcEEEEEccchhhccHHHHH-HHHHh--------CCCeEEEEEeCCccHHH
Confidence 667775311 1124678889988874 456666444322232334342 23332 77866554 3321111
Q ss_pred ------C-----Cc-CccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 208 ------L-----GA-EHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 208 ------~-----G~-tHsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
. +. .+.-.+..+.+.. |+..+...+++|+...++++++.++|++|-
T Consensus 467 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~gp~lie 524 (549)
T 3eya_A 467 AMEMKAGGYLTDGTELHDTNFARIAEAC-GITGIRVEKASEVDEALQRAFSIDGPVLVD 524 (549)
T ss_dssp ------------CCBCCCCCHHHHHHHT-TSEEEEECSGGGHHHHHHHHHHSSSCEEEE
T ss_pred HHHHHhcCCCCcCCcCCCCCHHHHHHHc-CCcEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 10 1112333444444 667778899999999999999999999883
No 54
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=83.56 E-value=2.1 Score=44.70 Aligned_cols=112 Identities=11% Similarity=0.089 Sum_probs=65.8
Q ss_pred CCceEeccc--hhHHHHHHHHHHHhcC-CeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCC--
Q 015415 133 DLRVLDTPI--AENSFTGMGIGAAMTG-LRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGR-- 206 (407)
Q Consensus 133 p~R~i~~GI--aE~~~vg~A~GlA~~G-~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~-- 206 (407)
|.+|+..+. +=-..+++|.|++++. -+++++.+.-.-++..++.|. .++.. ++|+++++ .++.++
T Consensus 410 ~~~~~~~~~~g~~G~~l~~A~Gaala~~~~~vv~~~GDG~~~~~~~~l~-~a~~~--------~lp~~~vv~nN~~~~~~ 480 (603)
T 4feg_A 410 SNRHITSNLFATMGVGIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLA-TQVQY--------HLPVINVVFTNCQYGFI 480 (603)
T ss_dssp TCEEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGHH-HHHHT--------TCCCEEEEEECSBCHHH
T ss_pred CCceecCcccccccchhHHHhhHHHhCCCCcEEEEeccHHHhhhHHHHH-HHHHH--------CcCeEEEEEECCchHHH
Confidence 667776542 1224678888988885 355665444332333455442 33332 78877665 333211
Q ss_pred -----------CCCcC-ccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHH--hcCCCEEEe
Q 015415 207 -----------QLGAE-HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAI--RSENPVILF 254 (407)
Q Consensus 207 -----------~~G~t-Hsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~--~~~~Pv~ir 254 (407)
..+.. +.-.+..+.... |+..+.+.+++|+...++.+. +.++|++|-
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~~~gP~lIe 541 (603)
T 4feg_A 481 KDEQEDTNQNDFIGVEFNDIDFSKIADGV-HMQAFRVNKIEQLPDVFEQAKAIAQHEPVLID 541 (603)
T ss_dssp HHHHHHHCSSCCCSSBCCCCCHHHHHHHT-TCEEEEECBGGGHHHHHHHHHHHTTTSCEEEE
T ss_pred HHHHHHhcCCCcccCcCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 11111 222344444433 566677789999999999999 788999983
No 55
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=83.07 E-value=2.2 Score=45.88 Aligned_cols=98 Identities=15% Similarity=0.193 Sum_probs=59.7
Q ss_pred HHHHHHHHHhcC---------------CeeEEEecchhHHH--HHHHHHHHhhhhhchhcCCccccc-EEEEec-CCCCC
Q 015415 146 FTGMGIGAAMTG---------------LRPIVEGMNMGFLL--LAFNQISNNCGMLHYTSGGQFTIP-IVIRGP-GGVGR 206 (407)
Q Consensus 146 ~vg~A~GlA~~G---------------~rp~~~t~~~~f~~--ra~dqi~~~~a~~~~~~gg~~~lp-vvi~~~-~G~~~ 206 (407)
.+.+|.|+|++- -+.+++.+.-.-++ ..++.+. .++.. ++| ++++.. ++. +
T Consensus 160 gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~~Eal~-~A~~~--------~L~~livI~dnN~~-~ 229 (711)
T 3uk1_A 160 GLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACS-LAGTL--------KLNKLIALYDDNGI-S 229 (711)
T ss_dssp HHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHH-HHHHT--------TCTTEEEEEEECSE-E
T ss_pred HHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccHHHHHH-HHHHh--------CCCcEEEEEECCCc-c
Confidence 466677777652 23455544433344 4666663 45544 787 555553 443 2
Q ss_pred CCCcCc---cchHHHHHccCCCcEEEee---CCHHHHHHHHHHHHhcCCCEEEe
Q 015415 207 QLGAEH---SQRLESYFQSIPGIQMVAC---STPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 207 ~~G~tH---sq~~ea~~~~iPgl~V~~P---~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
-++.++ ...+...+++. ||.++.| .|.+++..++++|.+.++|++|.
T Consensus 230 i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~d~~~l~~Al~~A~~~~~P~lI~ 282 (711)
T 3uk1_A 230 IDGDVVNWFHDDTPKRFEAY-GWNVIPNVNGHDVDAIDAAIAKAKRSDKPSLIC 282 (711)
T ss_dssp TTEEGGGTCCCCHHHHHHHT-TCEEEEEEETTCHHHHHHHHHHHTTCSSCEEEE
T ss_pred cccchhhhcCCCHHHHHHHc-CCcEEEEeCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 223222 23344566666 7777765 58899999999988888999985
No 56
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=82.63 E-value=4.6 Score=41.71 Aligned_cols=112 Identities=15% Similarity=0.186 Sum_probs=65.3
Q ss_pred CCceEeccc--hhHHHHHHHHHHHhcCCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-c-CCCCCCC
Q 015415 133 DLRVLDTPI--AENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-P-GGVGRQL 208 (407)
Q Consensus 133 p~R~i~~GI--aE~~~vg~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~-~G~~~~~ 208 (407)
|.++++.|. .=-..+++|.|++++.-+++++...-.-++..+..+. .+... ++|++++. . +|.....
T Consensus 416 p~~~~~~g~~g~~G~~l~~AiGaala~~~~vv~i~GDGsf~~~~~el~-ta~~~--------~l~~~ivv~NN~~~~~~~ 486 (568)
T 2c31_A 416 PRKRLDSGTWGVMGIGMGYCVAAAAVTGKPVIAVEGDSAFGFSGMELE-TICRY--------NLPVTVIIMNNGGIYKGN 486 (568)
T ss_dssp TTCEEESTTTTCSSCHHHHHHHHHHHHCSCEEEEEEHHHHHTTGGGHH-HHHHT--------TCCEEEEEEESSBSSCSC
T ss_pred CCeEEcCCCCccccccHHHHHHHHhCCCCcEEEEEcchHhhccHHHHH-HHHHh--------CCCeEEEEEeCchhHHHH
Confidence 778877653 1223477888888874455555444322222233332 23332 78877665 3 3421111
Q ss_pred C------c-----CccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 209 G------A-----EHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 209 G------~-----tHsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
. . .+.-.+..+...+ |+..+...+++|+...++++++.++|++|-
T Consensus 487 ~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 542 (568)
T 2c31_A 487 EADPQPGVISCTRLTRGRYDMMMEAF-GGKGYVANTPAELKAALEEAVASGKPCLIN 542 (568)
T ss_dssp CCCSBTTBCCTTBCCCCCHHHHHHTT-TCEEEEESSHHHHHHHHHHHHHHTSCEEEE
T ss_pred HHHhhcCCcccCcCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 0 2222334444444 677888899999999999999889999883
No 57
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=81.37 E-value=2.8 Score=43.43 Aligned_cols=112 Identities=16% Similarity=0.140 Sum_probs=66.2
Q ss_pred CCceEeccc--hhHHHHHHHHHHHhcC-CeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cC-CCC--
Q 015415 133 DLRVLDTPI--AENSFTGMGIGAAMTG-LRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PG-GVG-- 205 (407)
Q Consensus 133 p~R~i~~GI--aE~~~vg~A~GlA~~G-~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~-G~~-- 205 (407)
|.+|+..+- +=-..++.|.|++++. -+++++...-.-++..++.+. .+... ++|++++. .+ |..
T Consensus 410 ~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~~~~~L~-ta~~~--------~l~~~ivv~nN~~~~~~ 480 (566)
T 1ozh_A 410 ARQVMISNGQQTMGVALPWAIGAWLVNPERKVVSVSGDGGFLQSSMELE-TAVRL--------KANVLHLIWVDNGYNMV 480 (566)
T ss_dssp CSEEECCCTTCCTTCHHHHHHHHHHHSTTSEEEEEEEHHHHHHHTTHHH-HHHHH--------TCCEEEEEEECSBCHHH
T ss_pred CCeEEeCCCcccccchHHHHHHHHHhCCCCCEEEEEcChHHhccHHHHH-HHHHh--------CCCcEEEEEECCchhHH
Confidence 678876431 1224567888888774 255555445322333444442 23332 78877665 33 321
Q ss_pred C---------CCC-cCccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 206 R---------QLG-AEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 206 ~---------~~G-~tHsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
+ ..+ ..+.-.+..+.... |+..+...+++|+...++++++.++|++|-
T Consensus 481 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lie 538 (566)
T 1ozh_A 481 AIQEEKKYQRLSGVEFGPMDFKAYAESF-GAKGFAVESAEALEPTLRAAMDVDGPAVVA 538 (566)
T ss_dssp HHHHHHHHSSCCSCBCCCCCHHHHHHTT-TSEEEECCSGGGHHHHHHHHHHSSSCEEEE
T ss_pred HHHHHHhcCCCccCcCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 1 111 11212344555555 777888899999999999999889999883
No 58
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=80.65 E-value=4.2 Score=42.49 Aligned_cols=112 Identities=12% Similarity=0.071 Sum_probs=66.0
Q ss_pred CCceEeccc-h-hHHHHHHHHHHHhcC-CeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cC-CCC--
Q 015415 133 DLRVLDTPI-A-ENSFTGMGIGAAMTG-LRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PG-GVG-- 205 (407)
Q Consensus 133 p~R~i~~GI-a-E~~~vg~A~GlA~~G-~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~-G~~-- 205 (407)
|.+|++.|- . --..+++|.|+|++. -+++++...-.-++..++.+. .++.. ++|++++. .+ |..
T Consensus 432 ~~~~~~~g~~G~~G~~l~~AiGaala~~~~~vv~i~GDGs~~~~~~~L~-ta~~~--------~l~~~ivv~NN~~~~~~ 502 (616)
T 2pan_A 432 DRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDFDFQFLIEELA-VGAQF--------NIPYIHVLVNNAYLGLI 502 (616)
T ss_dssp TTSEEECTTTCCTTCHHHHHHHHHHHCTTCEEEEEEEHHHHHHTGGGHH-HHHHT--------TCCCEEEEEECSBCHHH
T ss_pred CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchhhhCCHHHHH-HHHHh--------CCCeEEEEEECCcchHH
Confidence 678999753 2 233788899999874 355665445322333444442 23332 78876554 33 221
Q ss_pred --------CC-------CC---cCc---cchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----cCCCEEEe
Q 015415 206 --------RQ-------LG---AEH---SQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIR----SENPVILF 254 (407)
Q Consensus 206 --------~~-------~G---~tH---sq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir 254 (407)
+. .+ ..| .-.+..+...+ |+..+...+++|+...++++++ .++|++|-
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~gp~lIe 575 (616)
T 2pan_A 503 RQSQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGL-GCKAIRVFKPEDIAPAFEQAKALMAQYRVPVVVE 575 (616)
T ss_dssp HHHGGGGTCCCSCBCCCCCTTCGGGTTCCCCHHHHHHHT-TCEEEEECSGGGHHHHHHHHHHHHHHHCSCEEEE
T ss_pred HHHHHHhcCCccccccccccccccCCCCCCCHHHHHHHc-CCeEEEECCHHHHHHHHHHHHhhcccCCCcEEEE
Confidence 00 01 011 02333455544 6677778899999999999988 78999883
No 59
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=80.32 E-value=5.8 Score=42.17 Aligned_cols=107 Identities=13% Similarity=0.126 Sum_probs=61.6
Q ss_pred EeccchhHHHHHHHHHHHhcCC---------------eeEEEecchhHHH--HHHHHHHHhhhhhchhcCCccccc-EEE
Q 015415 137 LDTPIAENSFTGMGIGAAMTGL---------------RPIVEGMNMGFLL--LAFNQISNNCGMLHYTSGGQFTIP-IVI 198 (407)
Q Consensus 137 i~~GIaE~~~vg~A~GlA~~G~---------------rp~~~t~~~~f~~--ra~dqi~~~~a~~~~~~gg~~~lp-vvi 198 (407)
+.+|.-=+ .+.+|.|+|++-. +.+++.+.-.-++ ..++.+. .++.. ++| +++
T Consensus 113 ~~tG~lG~-gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~-~A~~~--------~L~~liv 182 (663)
T 3kom_A 113 TTTGPLGQ-GVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACS-LAGTL--------GLNKLVA 182 (663)
T ss_dssp SCCCSTTH-HHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHHSHHHHHHHH-HHHHH--------TCTTEEE
T ss_pred cCCcchhh-HHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhhhchHHHHHH-HHHHh--------CCCeEEE
Confidence 34553333 4666777777521 4455544433344 4566663 45544 787 555
Q ss_pred Ee-cCCC--CCCCCcCccchHHHHHccCCCcEEEee---CCHHHHHHHHHHHHh-cCCCEEEe
Q 015415 199 RG-PGGV--GRQLGAEHSQRLESYFQSIPGIQMVAC---STPYNAKGLMKAAIR-SENPVILF 254 (407)
Q Consensus 199 ~~-~~G~--~~~~G~tHsq~~ea~~~~iPgl~V~~P---~d~~e~~~~~~~a~~-~~~Pv~ir 254 (407)
+. .++. .+..+......+...+... ||.++-+ .|.+++..+++.|.+ .++|++|.
T Consensus 183 i~dnN~~~i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~d~~~l~~al~~A~~~~~~P~lI~ 244 (663)
T 3kom_A 183 FWDDNNISIDGDTKGWFSDNTPERFRAY-GWHVIENVDGHDFVAIEKAINEAHSQQQKPTLIC 244 (663)
T ss_dssp EEEECC-----CGGGTCCCCHHHHHHHT-TCEEEEEEETTCHHHHHHHHHHHHHCSSSCEEEE
T ss_pred EEECCCcccccchhhhcchhHHHHHHHC-CCeEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 44 3443 2222222223444666666 8888733 388999999999988 58999985
No 60
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=80.29 E-value=6.3 Score=40.94 Aligned_cols=112 Identities=12% Similarity=0.137 Sum_probs=65.7
Q ss_pred CCceEeccc--hhHHHHHHHHHHHhcC-CeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cC-CCC--
Q 015415 133 DLRVLDTPI--AENSFTGMGIGAAMTG-LRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PG-GVG-- 205 (407)
Q Consensus 133 p~R~i~~GI--aE~~~vg~A~GlA~~G-~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~-G~~-- 205 (407)
|.+|++.|- .=-..+++|.|++++. -+++++...-.-++..+..+. .++.. ++|++++. .+ |..
T Consensus 416 ~~~~~~~g~~G~~G~~l~~AiGaala~~~~~vv~i~GDGs~~~~~~~L~-ta~~~--------~l~~~ivv~NN~~~~~~ 486 (590)
T 1ybh_A 416 PRQWLSSGGLGAMGFGLPAAIGASVANPDAIVVDIDGDGSFIMNVQELA-TIRVE--------NLPVKVLLLNNQHLGMV 486 (590)
T ss_dssp TTSEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHTTTHHH-HHHHT--------TCCEEEEEEECSBCHHH
T ss_pred CCeEEeCCCcccccchHHHHHHHHHhCCCCcEEEEEccchhhccHHHHH-HHHHh--------CCCcEEEEEECCcchHH
Confidence 788998753 2333778899998874 356666445322333444442 23332 78866554 33 321
Q ss_pred C--------C-C-Cc---C-c-----cchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 206 R--------Q-L-GA---E-H-----SQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 206 ~--------~-~-G~---t-H-----sq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
+ . . +. + | .-.+..+...+ |+..+...+++|+..+++++++.++|++|-
T Consensus 487 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lie 553 (590)
T 1ybh_A 487 MQWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAAC-GIPAARVTKKADLREAIQTMLDTPGPYLLD 553 (590)
T ss_dssp HHHHHHHSTTCCCSCBCSCGGGTTSCSSCHHHHHHHT-TCCEEEECBHHHHHHHHHHHHHSSSCEEEE
T ss_pred HHHHHHhcCCccccccccccccccCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 0 0 00 1 0 12344444443 455667789999999999999989999884
No 61
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=80.25 E-value=1.4 Score=45.27 Aligned_cols=112 Identities=14% Similarity=0.169 Sum_probs=64.4
Q ss_pred CCceEecc-chhHHHHHHHHHHHhcC-CeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cC-CCC--C
Q 015415 133 DLRVLDTP-IAENSFTGMGIGAAMTG-LRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PG-GVG--R 206 (407)
Q Consensus 133 p~R~i~~G-IaE~~~vg~A~GlA~~G-~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~-G~~--~ 206 (407)
|.+|+..+ -.=-..+++|.|++++- -+++++...-.-++..++.+. .++.. ++|++++. .+ |.. .
T Consensus 392 ~~~~~~~~gg~~G~~l~~A~G~a~a~~~~~vv~~~GDG~~~~~~~~l~-~a~~~--------~l~~~ivv~nN~~~~~~~ 462 (528)
T 1q6z_A 392 PGSYYFCAAGGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALW-TAAQY--------NIPTIFVIMNNGTYGALR 462 (528)
T ss_dssp SSCEEECTTCCTTSHHHHHHHHHHHCTTSCEEEEEEHHHHTTTGGGHH-HHHHH--------TCCCEEEEEECSBCHHHH
T ss_pred CCcEECCCCccccchHHHHHHHHHhCCCCcEEEEECCcHHHhhHHHHH-HHHHh--------CCCeEEEEEeCCcchHhH
Confidence 56777532 12234567788888763 356666444322333344443 23332 67877665 33 221 1
Q ss_pred C----------CCcC-ccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 207 Q----------LGAE-HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 207 ~----------~G~t-Hsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
. .+.. |.-.+..+.... |+..+...+++|+...++++.+.++|++|-
T Consensus 463 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~gp~lie 520 (528)
T 1q6z_A 463 WFAGVLEAENVPGLDVPGIDFRALAKGY-GVQALKADNLEQLKGSLQEALSAKGPVLIE 520 (528)
T ss_dssp HHHHHHTCCSCCSCBCCCCCHHHHHHHH-TCEEEEESSHHHHHHHHHHHHTCSSCEEEE
T ss_pred HHHHHhcCCCcccCCCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHHCCCcEEEE
Confidence 0 0111 222344444444 667778899999999999999889999883
No 62
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=80.04 E-value=5.6 Score=42.06 Aligned_cols=98 Identities=14% Similarity=0.219 Sum_probs=58.9
Q ss_pred HHHHHHHHHhcC------------CeeEEEecchhHHH--HHHHHHHHhhhhhchhcCCccccc-EEEEe-cCCCCCCCC
Q 015415 146 FTGMGIGAAMTG------------LRPIVEGMNMGFLL--LAFNQISNNCGMLHYTSGGQFTIP-IVIRG-PGGVGRQLG 209 (407)
Q Consensus 146 ~vg~A~GlA~~G------------~rp~~~t~~~~f~~--ra~dqi~~~~a~~~~~~gg~~~lp-vvi~~-~~G~~~~~G 209 (407)
.++.|.|+|++- -+.+++.+.-.-++ .+++.+. .++.. ++| ++++. .++.+ -++
T Consensus 119 gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~Eal~-~A~~~--------~L~~livi~nnN~~~-i~~ 188 (632)
T 3l84_A 119 GVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACS-LAGLH--------KLDNFILIYDSNNIS-IEG 188 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHHHHHHHH-HHHHT--------TCTTEEEEEEECSEE-TTE
T ss_pred HHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhccHHHHHH-HHHHc--------CCCcEEEEEECCCcc-ccc
Confidence 466677776652 24455444544444 5667663 45543 777 55554 34432 222
Q ss_pred cC---ccchHHHHHccCCCcEEEee--CCHHHHHHHHHHHHhcCCCEEEe
Q 015415 210 AE---HSQRLESYFQSIPGIQMVAC--STPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 210 ~t---Hsq~~ea~~~~iPgl~V~~P--~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
.+ ....+...+.+. ||.++.. .|.+++..+++.|.+.++|++|.
T Consensus 189 ~~~~~~~~d~~~~~~a~-G~~~~~vdGhd~~~l~~al~~A~~~~~P~lI~ 237 (632)
T 3l84_A 189 DVGLAFNENVKMRFEAQ-GFEVLSINGHDYEEINKALEQAKKSTKPCLII 237 (632)
T ss_dssp EGGGTCCCCHHHHHHHT-TCEEEEEETTCHHHHHHHHHHHHTCSSCEEEE
T ss_pred chhhhcChhHHHHHHHc-CCeEEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 22 223344666666 8888733 27899999999998888999985
No 63
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=79.90 E-value=1.8 Score=44.80 Aligned_cols=111 Identities=11% Similarity=0.088 Sum_probs=65.3
Q ss_pred CCceEec---cchhHHHHHHHHHHHhcC---CeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cC-CC
Q 015415 133 DLRVLDT---PIAENSFTGMGIGAAMTG---LRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PG-GV 204 (407)
Q Consensus 133 p~R~i~~---GIaE~~~vg~A~GlA~~G---~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~-G~ 204 (407)
|.+|+.. |.- -..+++|.|++++. -+++++...-.-++..++.+. .++.. ++|++++. .+ |.
T Consensus 409 ~~~~~~~~g~g~~-G~~l~~AiGaa~a~~~~~~~vv~i~GDG~~~~~~~~L~-ta~~~--------~l~~~ivv~nN~~~ 478 (563)
T 2uz1_A 409 PGGFLCHGYLGSM-GVGFGTALGAQVADLEAGRRTILVTGDGSVGYSIGEFD-TLVRK--------QLPLIVIIMNNQSW 478 (563)
T ss_dssp CSEEECCCTTCCT-TTHHHHHHHHHHHHHHHTCEEEEEEEHHHHGGGTTHHH-HHHHH--------TCCCEEEEEECSBC
T ss_pred CCeEECCCCCccc-cChHHHHHHHHHHhhCCCCeEEEEEccHHHhCCHHHHH-HHHHh--------CCCeEEEEEeCCcc
Confidence 7788873 322 25667888888763 455555444322233344442 23332 77866554 33 32
Q ss_pred C--CC-----CCc-----C--ccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 205 G--RQ-----LGA-----E--HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 205 ~--~~-----~G~-----t--Hsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
. +. .|. + |.-.+..+.... |+..+...+++|+...++++++.++|++|-
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~gp~lie 541 (563)
T 2uz1_A 479 GATLHFQQLAVGPNRVTGTRLENGSYHGVAAAF-GADGYHVDSVESFSAALAQALAHNRPACIN 541 (563)
T ss_dssp HHHHHHHHHHTCTTCCCSCBCCCCCHHHHHHHT-TCEEEEECSHHHHHHHHHHHHHSSSCEEEE
T ss_pred hHHHHHHHHhcCCCcccCCcCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHHCCCCEEEE
Confidence 1 10 011 1 222344555554 677788899999999999999989999884
No 64
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=79.50 E-value=8 Score=41.11 Aligned_cols=99 Identities=11% Similarity=0.168 Sum_probs=59.7
Q ss_pred HHHHHHHHHhcC---------------CeeEEEecchhHHH--HHHHHHHHhhhhhchhcCCccccc-EEEEec-CCCCC
Q 015415 146 FTGMGIGAAMTG---------------LRPIVEGMNMGFLL--LAFNQISNNCGMLHYTSGGQFTIP-IVIRGP-GGVGR 206 (407)
Q Consensus 146 ~vg~A~GlA~~G---------------~rp~~~t~~~~f~~--ra~dqi~~~~a~~~~~~gg~~~lp-vvi~~~-~G~~~ 206 (407)
.+.+|.|+|++- -+.+++.+.-.-++ ..++.+. .++.. ++| ++++.. ++. +
T Consensus 121 gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~~~Eal~-~A~~~--------~L~~li~i~d~N~~-~ 190 (673)
T 1r9j_A 121 GIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALS-LAGHL--------ALEKLIVIYDSNYI-S 190 (673)
T ss_dssp HHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHH-HHHHH--------TCTTEEEEEEECSB-C
T ss_pred cHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccHHHHHHH-HHHHh--------CCCcEEEEEECCCC-c
Confidence 356666776651 23444444544455 4467663 45543 777 666653 443 2
Q ss_pred CCCcCc---cchHHHHHccCCCcEEE-ee---CCHHHHHHHHHHHHh-cCCCEEEee
Q 015415 207 QLGAEH---SQRLESYFQSIPGIQMV-AC---STPYNAKGLMKAAIR-SENPVILFE 255 (407)
Q Consensus 207 ~~G~tH---sq~~ea~~~~iPgl~V~-~P---~d~~e~~~~~~~a~~-~~~Pv~ir~ 255 (407)
-+|++. ...+...+++. ||.++ .. .|.+++..+++.|.+ .++|++|..
T Consensus 191 i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~~d~~~l~~Al~~A~~~~~~P~lI~~ 246 (673)
T 1r9j_A 191 IDGSTSLSFTEQCHQKYVAM-GFHVIEVKNGDTDYEGLRKALAEAKATKGKPKMIVQ 246 (673)
T ss_dssp SSSBGGGTCCCCHHHHHHHT-TCEEEEESCTTTCHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred cccchhhccCHhHHHHHHHC-CCeEEEEeCCCCCHHHHHHHHHHHHHcCCCCEEEEE
Confidence 233332 23344566665 88888 44 688999999999887 688998853
No 65
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=79.22 E-value=3.1 Score=43.03 Aligned_cols=98 Identities=10% Similarity=0.072 Sum_probs=54.9
Q ss_pred HHHHHHHHhcCCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCCCCc--------------C
Q 015415 147 TGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQLGA--------------E 211 (407)
Q Consensus 147 vg~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~~G~--------------t 211 (407)
++.|.|++++--+++++...-.-++..+..|. .+.. .++|++++. .++.++-.+. .
T Consensus 422 l~~A~Gaa~a~~~~vv~i~GDGsf~~~~~eL~-ta~~--------~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~ 492 (556)
T 3hww_A 422 LSTAAGVQRASGKPTLAIVGDLSALYDLNALA-LLRQ--------VSAPLVLIVVNNNGGQIFSLLPTPQSERERFYLMP 492 (556)
T ss_dssp HHHHHHHHHHHCCCEEEEEEHHHHHHTGGGHH-HHTT--------CSSCEEEEEEESCC-----------------CCCC
T ss_pred HHHHHHHHhcCCCcEEEEEccHHhhhcchhhH-hhcc--------cCCCcEEEEEECCCCCcccCCCCcchhHHHhccCC
Confidence 78888888873355555444322222222232 2222 378877665 3332111110 1
Q ss_pred ccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 212 HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 212 Hsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
|.-.+..+.... |+.-+...+++|+..+++++++.++|++|-
T Consensus 493 ~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~gp~lie 534 (556)
T 3hww_A 493 QNVHFEHAAAMF-ELKYHRPQNWQELETAFADAWRTPTTTVIE 534 (556)
T ss_dssp CCCCSHHHHHHT-TCEEECCSSHHHHHHHHHHHTTSSSEEEEE
T ss_pred CCCCHHHHHHHc-CCcEEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 111222333333 677788899999999999999989999883
No 66
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=79.17 E-value=8.6 Score=40.67 Aligned_cols=98 Identities=13% Similarity=0.122 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcC---------------CeeEEEecchhHHH--HHHHHHHHhhhhhchhcCCccccc-EEEEec-CCCCC
Q 015415 146 FTGMGIGAAMTG---------------LRPIVEGMNMGFLL--LAFNQISNNCGMLHYTSGGQFTIP-IVIRGP-GGVGR 206 (407)
Q Consensus 146 ~vg~A~GlA~~G---------------~rp~~~t~~~~f~~--ra~dqi~~~~a~~~~~~gg~~~lp-vvi~~~-~G~~~ 206 (407)
.+..|.|+|++- -+.+++.+.-.-++ ..++.+. .++.. ++| ++++.. ++..
T Consensus 123 gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~-~A~~~--------~L~~li~i~~nN~~~- 192 (651)
T 2e6k_A 123 GISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGEAAS-LAGHW--------GLSKLIVFWDDNRIS- 192 (651)
T ss_dssp HHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHH-HHHHT--------TCTTEEEEEEECCEE-
T ss_pred hHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhchhHHHHHHH-HHHHc--------CCCeEEEEEECCCcc-
Confidence 456677777651 23444444544444 4567663 45543 777 666653 4432
Q ss_pred CCCcCc---cchHHHHHccCCCcEEE-eeC--CHHHHHHHHHHHHhcCCCEEEe
Q 015415 207 QLGAEH---SQRLESYFQSIPGIQMV-ACS--TPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 207 ~~G~tH---sq~~ea~~~~iPgl~V~-~P~--d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
-++++. ...+...+... ||.++ ... |..++..+++.|.+.++|++|.
T Consensus 193 i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~d~~~l~~al~~a~~~~~P~lI~ 245 (651)
T 2e6k_A 193 IDGPTDLAFTEDVLARYRAY-GWQTLRVEDVNDLEALRKAIKLAKLDERPTLIA 245 (651)
T ss_dssp TTEEGGGTCCSCHHHHHHHT-TCEEEEESCTTCHHHHHHHHHHHHHSSSCEEEE
T ss_pred cccccccccCccHHHHHHhC-CCeEEEEeCCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 122222 23344566665 88888 333 7999999999998888999885
No 67
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=78.19 E-value=6.9 Score=41.09 Aligned_cols=25 Identities=12% Similarity=0.045 Sum_probs=21.5
Q ss_pred eeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 230 ACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 230 ~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
...|.+++..++++|.+.++|++|.
T Consensus 255 dG~d~~~l~~al~~A~~~~gP~lI~ 279 (621)
T 2o1s_A 255 DGHDVLGLITTLKNMRDLKGPQFLH 279 (621)
T ss_dssp ETTCHHHHHHHHHHHHHSCSEEEEE
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4468999999999999889999885
No 68
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=76.99 E-value=4.5 Score=31.53 Aligned_cols=73 Identities=11% Similarity=0.003 Sum_probs=48.1
Q ss_pred CcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhc-----CCcEEEEecCccccch-HHHHHHH
Q 015415 285 EHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKK-----THRVLIVEECMRTGGI-GASLTAA 358 (407)
Q Consensus 285 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~-----~~~vvvvEe~~~~GGl-Gs~I~~~ 358 (407)
++|+|.+. +....|..|.+.|++.||..+.+|+.. |.+...+..+. +=.+|++.|+...+|+ -.+|.+.
T Consensus 4 a~I~vYs~-~~Cp~C~~aK~~L~~~gi~y~~idi~~----d~~~~~~~~~~~~G~~tVP~I~i~Dg~~l~~~~~~el~~~ 78 (92)
T 2lqo_A 4 AALTIYTT-SWCGYCLRLKTALTANRIAYDEVDIEH----NRAAAEFVGSVNGGNRTVPTVKFADGSTLTNPSADEVKAK 78 (92)
T ss_dssp SCEEEEEC-TTCSSHHHHHHHHHHTTCCCEEEETTT----CHHHHHHHHHHSSSSSCSCEEEETTSCEEESCCHHHHHHH
T ss_pred CcEEEEcC-CCCHhHHHHHHHHHhcCCceEEEEcCC----CHHHHHHHHHHcCCCCEeCEEEEeCCEEEeCCCHHHHHHH
Confidence 45777765 566788889999999999999999864 44443333322 2256777665544554 3567777
Q ss_pred HHhc
Q 015415 359 ITEN 362 (407)
Q Consensus 359 l~e~ 362 (407)
|.+.
T Consensus 79 L~el 82 (92)
T 2lqo_A 79 LVKI 82 (92)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7664
No 69
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=76.85 E-value=9 Score=40.78 Aligned_cols=99 Identities=13% Similarity=0.130 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhc----C-----------CeeEEEecchhHHH--HHHHHHHHhhhhhchhcCCccccc-EEEEec-CCCC
Q 015415 145 SFTGMGIGAAMT----G-----------LRPIVEGMNMGFLL--LAFNQISNNCGMLHYTSGGQFTIP-IVIRGP-GGVG 205 (407)
Q Consensus 145 ~~vg~A~GlA~~----G-----------~rp~~~t~~~~f~~--ra~dqi~~~~a~~~~~~gg~~~lp-vvi~~~-~G~~ 205 (407)
..+..|.|+|++ | -+.+++.+.-.-++ ..++.+. .++.. ++| ++++.. ++..
T Consensus 120 ~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~~~Eal~-~A~~~--------~L~~li~i~~nN~~~ 190 (680)
T 1gpu_A 120 QGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASS-LAGHL--------KLGNLIAIYDDNKIT 190 (680)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHH-HHHHT--------TCTTEEEEEEECSEE
T ss_pred chHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccchhhHHHHHH-HHHHh--------CCCcEEEEEECCCce
Confidence 345666777765 1 23444444544445 4567663 45543 777 666653 4432
Q ss_pred CCCCcCc---cchHHHHHccCCCcEEE-eeC---CHHHHHHHHHHHHh-cCCCEEEe
Q 015415 206 RQLGAEH---SQRLESYFQSIPGIQMV-ACS---TPYNAKGLMKAAIR-SENPVILF 254 (407)
Q Consensus 206 ~~~G~tH---sq~~ea~~~~iPgl~V~-~P~---d~~e~~~~~~~a~~-~~~Pv~ir 254 (407)
-++.+. ...+...+... ||.++ ... |..++..+++.|.+ .++|++|.
T Consensus 191 -i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~~d~~~l~~al~~A~~~~~~P~lI~ 245 (680)
T 1gpu_A 191 -IDGATSISFDEDVAKRYEAY-GWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIK 245 (680)
T ss_dssp -TTEEGGGTCCCCHHHHHHHH-TCEEEEESCTTTCHHHHHHHHHHHHHCTTSCEEEE
T ss_pred -EecccccccCccHHHHHHhc-CCeEEEEecCCCCHHHHHHHHHHHHHCCCCCEEEE
Confidence 222222 22333455554 88887 444 78999999999987 58899885
No 70
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=76.22 E-value=2.7 Score=43.64 Aligned_cols=112 Identities=13% Similarity=0.104 Sum_probs=64.5
Q ss_pred CCceEecc-c-hhHHHHHHHHHHHhcC-CeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCC-CC--
Q 015415 133 DLRVLDTP-I-AENSFTGMGIGAAMTG-LRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGG-VG-- 205 (407)
Q Consensus 133 p~R~i~~G-I-aE~~~vg~A~GlA~~G-~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G-~~-- 205 (407)
|.+|+..+ . .=-..++.|.|++++. -+++++...-.-++..++.+. .++.. ++|++++. .++ ..
T Consensus 426 ~~~~~~~~g~g~mG~~l~~AiGaa~a~~~~~vv~i~GDG~~~~~~~~L~-~a~~~--------~l~~~ivv~NN~~~~~~ 496 (573)
T 2iht_A 426 PFGFLTSAGCSSFGYGIPAAIGAQMARPDQPTFLIAGDGGFHSNSSDLE-TIARL--------NLPIVTVVVNNDTNGLI 496 (573)
T ss_dssp TTSEECCSSSCCTTCHHHHHHHHHHHSTTSCEEEEEEHHHHHHTGGGHH-HHHHH--------TCCCEEEEEECSBCHHH
T ss_pred CCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEccHHHHhHHHHHH-HHHHh--------CCCeEEEEEECCcchhh
Confidence 67888652 1 1223668889988874 255555444322333344332 23332 77866554 332 21
Q ss_pred CC---------CCc-Cc--cchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 206 RQ---------LGA-EH--SQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 206 ~~---------~G~-tH--sq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
+. .+. +. .-.+..+.... |+..+...+.+|+...++++.+.++|++|-
T Consensus 497 ~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~gp~lie 556 (573)
T 2iht_A 497 ELYQNIGHHRSHDPAVKFGGVDFVALAEAN-GVDATRATNREELLAALRKGAELGRPFLIE 556 (573)
T ss_dssp HHHHHHHHSSCCGGGTBCCCCCHHHHHHHT-TCEEEECCSHHHHHHHHHHHHTSSSCEEEE
T ss_pred HHHHHHhcCCCcCccccCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 11 010 11 01334455554 677788899999999999999888999884
No 71
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=76.00 E-value=5.1 Score=41.54 Aligned_cols=98 Identities=8% Similarity=0.003 Sum_probs=54.0
Q ss_pred HHHHHHHHHhcCCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCCCCc--C-----------
Q 015415 146 FTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQLGA--E----------- 211 (407)
Q Consensus 146 ~vg~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~~G~--t----------- 211 (407)
.++.|.|+|+.+ +++++...-.-++..+..|- .+.. .++|++++. .++.++-... .
T Consensus 441 ~l~~AiGaa~~~-~~vv~i~GDGsf~~~~~eL~-ta~~--------~~l~~~ivv~NN~~~g~~~~~~~~~~~~~~~~~~ 510 (578)
T 3lq1_A 441 VVSSALGASVVF-QPMFLLIGDLSFYHDMNGLL-MAKK--------YKMNLTIVIVNNDGGGIFSFLPQANEPKYFESLF 510 (578)
T ss_dssp HHHHHHHHTTTS-SSEEEEEEHHHHHHTGGGGH-HHHH--------TTCCEEEEEECCC---------------------
T ss_pred HHHHHHHHhcCC-CCEEEEEchHHHHhhHHHHH-hhcc--------CCCCeEEEEEECCcCccccccccccccchhhhhc
Confidence 478899998765 45555444322222222231 2222 278877665 4332221110 0
Q ss_pred ---ccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 212 ---HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 212 ---Hsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
|.-.+..+.... |+.-+...+++|+..+++++++.++|++|-
T Consensus 511 ~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lie 555 (578)
T 3lq1_A 511 GTSTELDFRFAAAFY-DADYHEAKSVDELEEAIDKASYHKGLDIIE 555 (578)
T ss_dssp ----CCCTHHHHHHT-TCEEEECCSHHHHHHHHHHHTTSSSEEEEE
T ss_pred cCCCCCCHHHHHHHc-CCceEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 101122333333 567788899999999999999989999884
No 72
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=75.48 E-value=7.2 Score=40.14 Aligned_cols=112 Identities=21% Similarity=0.220 Sum_probs=64.1
Q ss_pred CCceEeccc--hhHHHHHHHHHHHhcCCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-c-CCCCCCC
Q 015415 133 DLRVLDTPI--AENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-P-GGVGRQL 208 (407)
Q Consensus 133 p~R~i~~GI--aE~~~vg~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~-~G~~~~~ 208 (407)
|.++++.|. .=-..++.|.|++++.-+++++...-.-++..+..+. .+... ++|++++. . +|..+..
T Consensus 411 p~~~~~~g~~g~~G~~l~~AiGaa~a~~~~vv~i~GDGsf~~~~~el~-ta~~~--------~l~~~ivv~NN~~~~~~~ 481 (564)
T 2q28_A 411 PRRRLDCGTWGVMGIGMGYAIGASVTSGSPVVAIEGDSAFGFSGMEIE-TICRY--------NLPVTIVIFNNGGIYRGD 481 (564)
T ss_dssp SSCEEESTTTTCTTCHHHHHHHHHHHHCSCEEEEEEHHHHHTTGGGHH-HHHHT--------TCCEEEEEEECSBSSCSC
T ss_pred CCeEecCCCCCcccchHHHHHHHhhcCCCcEEEEEcchHhhccHHHHH-HHHHh--------CCCeEEEEEeCchhHHHH
Confidence 778887553 1223578888888874455555444322222223332 23332 78877665 3 3421111
Q ss_pred -------C---c---CccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 209 -------G---A---EHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 209 -------G---~---tHsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
+ . .|.-.+..+...+ |+..+...+++|+...++++++.++|++|-
T Consensus 482 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 539 (564)
T 2q28_A 482 GVDLSGAGAPSPTDLLHHARYDKLMDAF-RGVGYNVTTTDELRHALTTGIQSRKPTIIN 539 (564)
T ss_dssp CCCTTSSCCCCTTBCCTTCCGGGGGGGG-TCEEEEECSHHHHHHHHHHHHHHTSCEEEE
T ss_pred HHHHhccCCccccccCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 1 0 1111222344443 677778899999999999999889999883
No 73
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=74.64 E-value=14 Score=39.30 Aligned_cols=100 Identities=11% Similarity=0.144 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhcC---------------CeeEEEecchhHHH--HHHHHHHHhhhhhchhcCCcccc-cEEEEec-CCCC
Q 015415 145 SFTGMGIGAAMTG---------------LRPIVEGMNMGFLL--LAFNQISNNCGMLHYTSGGQFTI-PIVIRGP-GGVG 205 (407)
Q Consensus 145 ~~vg~A~GlA~~G---------------~rp~~~t~~~~f~~--ra~dqi~~~~a~~~~~~gg~~~l-pvvi~~~-~G~~ 205 (407)
..+.+|.|+|++- -+.+++.+.-.-++ ..++.+. .++.. ++ |++++.. ++..
T Consensus 131 ~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~i~GDG~~~eG~~~Eal~-~A~~~--------~L~~li~i~~nN~~~ 201 (675)
T 1itz_A 131 QGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACS-LAGHW--------GLGKLIAFYDDNHIS 201 (675)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHH-HHHHT--------TCTTEEEEEEECSEE
T ss_pred hHHHHHHHHHHHhhhhcccccccccCCCCCEEEEEECHhHhchhHHHHHHH-HHHHh--------CCCcEEEEEECCCcc
Confidence 3456677777652 23444444544445 4677764 45543 66 5666653 4432
Q ss_pred --CCCCcCccchHHHHHccCCCcEEEee-C---CHHHHHHHHHHHHh-cCCCEEEe
Q 015415 206 --RQLGAEHSQRLESYFQSIPGIQMVAC-S---TPYNAKGLMKAAIR-SENPVILF 254 (407)
Q Consensus 206 --~~~G~tHsq~~ea~~~~iPgl~V~~P-~---d~~e~~~~~~~a~~-~~~Pv~ir 254 (407)
+..+......+...+.+. ||.++.+ . |.+++..+++.|.+ .++|++|.
T Consensus 202 i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~~d~~~l~~al~~a~~~~~~P~lI~ 256 (675)
T 1itz_A 202 IDGDTEIAFTEDVSTRFEAL-GWHTIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIK 256 (675)
T ss_dssp TTEEGGGTCCSCHHHHHHHT-TCEEEEESCTTTCHHHHHHHHHHHHHCCSSCEEEE
T ss_pred CCCChhhhcChhHHHHHHhC-CCEEEEEecCCCCHHHHHHHHHHHHHCCCCeEEEE
Confidence 221112223344566665 8888833 3 78899999999987 58899885
No 74
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=73.49 E-value=5 Score=41.24 Aligned_cols=112 Identities=11% Similarity=0.022 Sum_probs=62.1
Q ss_pred CCceEecc--chhHHHHHHHHHHHhcC-CeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cC-CCC--
Q 015415 133 DLRVLDTP--IAENSFTGMGIGAAMTG-LRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PG-GVG-- 205 (407)
Q Consensus 133 p~R~i~~G--IaE~~~vg~A~GlA~~G-~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~-G~~-- 205 (407)
|.+|+..+ -+=-..+++|.|++++. -+++++...-.-++..+..+. .+... ++|++++. .+ |..
T Consensus 398 ~~~~~~~~~~g~mG~~l~~A~G~a~a~~~~~vv~~~GDG~~~~~~~el~-ta~~~--------~l~~~ivv~nN~~~~~~ 468 (552)
T 1ovm_A 398 DVNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIVLTGDGAAQLTIQELG-SMLRD--------KQHPIILVLNNEGYTVE 468 (552)
T ss_dssp SCEEECCTTTCCTTHHHHHHHHHHHHCTTSCEEEEEEHHHHHHHTTHHH-HHHHT--------TCCCEEEEEESSSCHHH
T ss_pred CCeEEechhhHhhhhHHHHHHHHHHhCCCCcEEEEECchHHHhHHHHHH-HHHHh--------CCCCEEEEEECCCCeEE
Confidence 55676522 12234567888888874 255555445322333444443 23332 77866654 33 321
Q ss_pred ----CCCC---cCccchHHHHHccCCCc----EEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 206 ----RQLG---AEHSQRLESYFQSIPGI----QMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 206 ----~~~G---~tHsq~~ea~~~~iPgl----~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
+... ..|.-.+..+.... |+ ..+...+.+|+...++++.+.++|++|-
T Consensus 469 ~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~~~~~v~~~~~l~~al~~a~~~~gp~lie 527 (552)
T 1ovm_A 469 RAIHGAEQRYNDIALWNWTHIPQAL-SLDPQSECWRVSEAEQLADVLEKVAHHERLSLIE 527 (552)
T ss_dssp HHHSCTTCGGGCCCCCCGGGSTTTS-CSSCCEEEEEECBHHHHHHHHHHHTTCSSEEEEE
T ss_pred EeeccCCCCcccCCCCCHHHHHHHh-CCCcCCCEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 1111 01111223333333 56 7778889999999999998888998873
No 75
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=71.80 E-value=10 Score=39.85 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=21.4
Q ss_pred eeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 230 ACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 230 ~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
...|.+++..++++|.+.++|++|.
T Consensus 260 dG~d~~~l~~al~~A~~~~~P~lI~ 284 (629)
T 2o1x_A 260 DGHNVQELVWLLERLVDLDGPTILH 284 (629)
T ss_dssp ESSCHHHHHHHHHHHTTSSSEEEEE
T ss_pred CCcCHHHHHHHHHHHHhcCCCEEEE
Confidence 4468999999999998888999885
No 76
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=71.58 E-value=2.6 Score=44.11 Aligned_cols=99 Identities=8% Similarity=0.004 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCCeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCCCCc-------------
Q 015415 145 SFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQLGA------------- 210 (407)
Q Consensus 145 ~~vg~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~~G~------------- 210 (407)
..++.|.|++++--+++++...-.-++..+..+. .+.. .++|++++. .++..+-.+.
T Consensus 459 ~~l~~AiGaala~~~~vv~i~GDGsf~~~~~eL~-ta~~--------~~lp~~ivv~NN~~~~i~~~~~~~q~~~~~~~~ 529 (604)
T 2x7j_A 459 GVVSSAMGVCEGTKAPVTLVIGDLSFYHDLNGLL-AAKK--------LGIPLTVILVNNDGGGIFSFLPQASEKTHFEDL 529 (604)
T ss_dssp SHHHHHHHHHHHHTSCEEEEEEHHHHHHTGGGGH-HHHH--------HCCCEEEEEEECSSCGGGGGSGGGSCHHHHHHH
T ss_pred cHHHHHHHHHhcCCCcEEEEEccHHHHhHHHHHH-Hhhh--------cCCCeEEEEEeCCCCcccccCCCCccchhhHhh
Confidence 4678888888874456665444322222333332 2333 278877665 3332221110
Q ss_pred ---CccchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEE
Q 015415 211 ---EHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVIL 253 (407)
Q Consensus 211 ---tHsq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~i 253 (407)
.|.-.+..+.... |+..+...+++|+...+++++..++|++|
T Consensus 530 ~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~gp~li 574 (604)
T 2x7j_A 530 FGTPTGLDFKHAAALY-GGTYSCPASWDEFKTAYAPQADKPGLHLI 574 (604)
T ss_dssp TTCCCCCCTHHHHHHT-TCEEECCSSHHHHHHHCCCCCSSCCEEEE
T ss_pred ccCCCCCCHHHHHHHc-CCeEEecCCHHHHHHHHHHHHhCCCCEEE
Confidence 0111222333333 67788889999999888888777889887
No 77
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=70.41 E-value=8.1 Score=30.63 Aligned_cols=68 Identities=16% Similarity=0.067 Sum_probs=44.3
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHh-cCCcEEEEecCccccchHH
Q 015415 284 GEHVTILTYS----RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIK-KTHRVLIVEECMRTGGIGA 353 (407)
Q Consensus 284 G~dv~Iia~G----~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~-~~~~vvvvEe~~~~GGlGs 353 (407)
..+++|++.+ +....|.+|.+.|++.|++.+.+|+..- |--.+.|.+... .+-..+.+.... .||+..
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~-~~~~~~l~~~~g~~tvP~ifi~g~~-iGG~d~ 89 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILEN-EMLRQGLKEYSNWPTFPQLYIGGEF-FGGCDI 89 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGC-HHHHHHHHHHHTCSSSCEEEETTEE-EECHHH
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCC-HHHHHHHHHHHCCCCCCeEEECCEE-EeCHHH
Confidence 4578999888 4788999999999999999999998641 111122322212 223456666654 588654
No 78
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=70.29 E-value=4.9 Score=41.51 Aligned_cols=112 Identities=14% Similarity=0.061 Sum_probs=59.8
Q ss_pred CCceEecc--chhHHHHHHHHHHHhcC-CeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cC-CCC--
Q 015415 133 DLRVLDTP--IAENSFTGMGIGAAMTG-LRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PG-GVG-- 205 (407)
Q Consensus 133 p~R~i~~G--IaE~~~vg~A~GlA~~G-~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~-G~~-- 205 (407)
|.+|+..+ -+=-..+++|.|++++- -+++++...-.-++..+..+. .++.. ++|++++. .+ |..
T Consensus 399 ~~~~~~~~~~g~mG~~l~~A~G~ala~~~~~vv~~~GDG~~~~~~~eL~-ta~~~--------~l~~~ivv~nN~~~~~~ 469 (566)
T 2vbi_A 399 GARVELEMQWGHIGWSVPSAFGNAMGSQDRQHVVMVGDGSFQLTAQEVA-QMVRY--------ELPVIIFLINNRGYVIE 469 (566)
T ss_dssp TCEEECCTTTCCTTTHHHHHHHHHHTCTTSEEEEEEEHHHHHHHGGGHH-HHHHT--------TCCCEEEEEECSSCHHH
T ss_pred CCEEEecCcccchhhHHHHHHHHHHhCCCCcEEEEEcchHHHhhHHHHH-HHHHh--------CCCcEEEEEECCcceEE
Confidence 45677422 12234567888888873 255555444322333344442 23332 78866554 33 321
Q ss_pred CC--C---CcCccchHHHHHccCCCc-----EEEeeCCHHHHHHHHHHHHhc-CCCEEEe
Q 015415 206 RQ--L---GAEHSQRLESYFQSIPGI-----QMVACSTPYNAKGLMKAAIRS-ENPVILF 254 (407)
Q Consensus 206 ~~--~---G~tHsq~~ea~~~~iPgl-----~V~~P~d~~e~~~~~~~a~~~-~~Pv~ir 254 (407)
+. . +..+.-.+..+.... |+ ..+...+.+|+...++++.+. ++|++|-
T Consensus 470 ~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~~~~~~v~~~~el~~al~~a~~~~~gp~lie 528 (566)
T 2vbi_A 470 IAIHDGPYNYIKNWDYAGLMEVF-NAGEGHGLGLKATTPKELTEAIARAKANTRGPTLIE 528 (566)
T ss_dssp HTTSCCGGGCCCCCCTTTHHHHH-HTTTCCCEEEEECSHHHHHHHHHHHHHCCSSCEEEE
T ss_pred EeeccCCccCCCCCCHHHHHHHc-CCCCCCccEEEeCCHHHHHHHHHHHHhcCCCcEEEE
Confidence 11 1 111111222222221 33 566778999999999999987 8999883
No 79
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=69.88 E-value=11 Score=40.45 Aligned_cols=86 Identities=6% Similarity=0.048 Sum_probs=50.5
Q ss_pred eEEEecchhHHH--HHHHHHHHhhhhhchhcCCccccc-EEEEec-CCC--CCCCCcCccchHHHHHccCCCcEEEee--
Q 015415 160 PIVEGMNMGFLL--LAFNQISNNCGMLHYTSGGQFTIP-IVIRGP-GGV--GRQLGAEHSQRLESYFQSIPGIQMVAC-- 231 (407)
Q Consensus 160 p~~~t~~~~f~~--ra~dqi~~~~a~~~~~~gg~~~lp-vvi~~~-~G~--~~~~G~tHsq~~ea~~~~iPgl~V~~P-- 231 (407)
.+++.+.-.-++ .++|.+ +.++.+ ++| ++++.. ++. .+..+..+...+...+.+. ||.++..
T Consensus 170 ~v~~~~GDG~l~eG~~~EAl-~~A~~~--------~L~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~-G~~~~~V~D 239 (700)
T 3rim_A 170 YIYVIASDGDIEEGVTSEAS-SLAAVQ--------QLGNLIVFYDRNQISIEDDTNIALCEDTAARYRAY-GWHVQEVEG 239 (700)
T ss_dssp CEEEEEEHHHHHSHHHHHHH-HHHHHT--------TCTTEEEEEEECSEETTEEGGGTCCCCHHHHHHHH-TCEEEEEEC
T ss_pred eEEEEECCcccccChHHHHH-HHHHHc--------CCCcEEEEEECCCcccccchhhccchhHHHHHHHc-CCeEEEECC
Confidence 344433433344 456666 345544 786 666653 443 2221122223343555555 7877766
Q ss_pred -CCHHHHHHHHHHHHh-cCCCEEEee
Q 015415 232 -STPYNAKGLMKAAIR-SENPVILFE 255 (407)
Q Consensus 232 -~d~~e~~~~~~~a~~-~~~Pv~ir~ 255 (407)
.|..++..+++.|.. .++|++|..
T Consensus 240 G~D~~al~~Al~~A~~~~~~P~lI~~ 265 (700)
T 3rim_A 240 GENVVGIEEAIANAQAVTDRPSFIAL 265 (700)
T ss_dssp TTCHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCCEEEEE
Confidence 588999999999887 588999863
No 80
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=69.24 E-value=17 Score=33.01 Aligned_cols=60 Identities=13% Similarity=0.024 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHH
Q 015415 297 YHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAI 359 (407)
Q Consensus 297 ~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l 359 (407)
..+..+++.|++.|.+++++|+.. ++|.+...+.++.++.||+.=.-+ .+++-..+..++
T Consensus 47 ~L~~~~~~~l~~~g~ev~~~dL~~--~~Dv~~~~~~l~~aD~iv~~~P~y-~~~~p~~lK~~i 106 (218)
T 3rpe_A 47 TLTNVAADFLRESGHQVKITTVDQ--GYDIESEIENYLWADTIIYQMPAW-WMGEPWILKKYI 106 (218)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEGGG--CCCHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEEECCC--ccCHHHHHHHHHhCCEEEEECChH-hccCCHHHHHHH
Confidence 445566777888899999999975 678888888899999888876665 366655555444
No 81
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=68.75 E-value=44 Score=28.12 Aligned_cols=53 Identities=13% Similarity=0.192 Sum_probs=33.2
Q ss_pred echhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCc
Q 015415 292 YSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECM 346 (407)
Q Consensus 292 ~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~ 346 (407)
+|+.-..|...++.|++.|++++++|+... .|.+.+.+.+.+++.|++.=..+
T Consensus 15 ~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~--~~~~~~~~~~~~~d~ii~Gspty 67 (159)
T 3fni_A 15 YGYSDRLAQAIINGITKTGVGVDVVDLGAA--VDLQELRELVGRCTGLVIGMSPA 67 (159)
T ss_dssp STTHHHHHHHHHHHHHHTTCEEEEEESSSC--CCHHHHHHHHHTEEEEEEECCBT
T ss_pred ChHHHHHHHHHHHHHHHCCCeEEEEECcCc--CCHHHHHHHHHhCCEEEEEcCcC
Confidence 344556666677778888999999887643 04444545566666666554443
No 82
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=67.48 E-value=8.1 Score=39.86 Aligned_cols=112 Identities=13% Similarity=0.061 Sum_probs=60.3
Q ss_pred CCceEeccc--hhHHHHHHHHHHHhcC-CeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-c-CCCC--
Q 015415 133 DLRVLDTPI--AENSFTGMGIGAAMTG-LRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-P-GGVG-- 205 (407)
Q Consensus 133 p~R~i~~GI--aE~~~vg~A~GlA~~G-~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~-~G~~-- 205 (407)
|.+|+..+. +=-..+++|.|+|++- -+++++...-.-++..++.+. .+... ++|++++. . +|..
T Consensus 403 ~~~~~~~~~~g~~G~~l~~A~G~ala~~~~~vv~i~GDGs~~~~~~el~-ta~~~--------~l~~~ivv~NN~~~~~~ 473 (568)
T 2wvg_A 403 GARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVA-QMVRL--------KLPVIIFLINNYGYTIE 473 (568)
T ss_dssp TCEEECCTTTCCTTTHHHHHHHHHHHCTTSEEEEEEEHHHHHHHGGGHH-HHHHT--------TCCCEEEEEECSSCHHH
T ss_pred CCeEEeCCCcchhhhHHHHHHHHHHhCCCCcEEEEEcChhHhccHHHHH-HHHHc--------CCCcEEEEEECCcceEe
Confidence 456764211 2234667788888763 355555445322233444443 23332 67866554 3 3321
Q ss_pred CC--C---CcCccchHHHHHccCCCc---------EEEeeCCHHHHHHHHHHHHhc-CCCEEEe
Q 015415 206 RQ--L---GAEHSQRLESYFQSIPGI---------QMVACSTPYNAKGLMKAAIRS-ENPVILF 254 (407)
Q Consensus 206 ~~--~---G~tHsq~~ea~~~~iPgl---------~V~~P~d~~e~~~~~~~a~~~-~~Pv~ir 254 (407)
+. . +..+.-.+..+...+ |+ ..+...+.+|+...++++++. ++|++|-
T Consensus 474 ~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~~~~~~~~~~v~~~~el~~al~~a~~~~~gp~lie 536 (568)
T 2wvg_A 474 VMIHDGPYNNIKNWDYAGLMEVF-NGNGGYDSGAGKGLKAKTGGELAEAIKVALANTDGPTLIE 536 (568)
T ss_dssp HTTSCCGGGCCCCCCHHHHHHHH-HCTTSSSCCCCEEEEESBHHHHHHHHHHHHHCCSSCEEEE
T ss_pred eeeccCCCcCCCCCCHHHHHHHh-CCCcccccCCcceEEeCCHHHHHHHHHHHHhcCCCcEEEE
Confidence 11 1 111212333332222 33 566778999999999999987 8999883
No 83
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=67.40 E-value=18 Score=38.28 Aligned_cols=99 Identities=15% Similarity=0.214 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhcC---------------CeeEEEecchhHHH--HHHHHHHHhhhhhchhcCCccccc-EEEEec-CCCC
Q 015415 145 SFTGMGIGAAMTG---------------LRPIVEGMNMGFLL--LAFNQISNNCGMLHYTSGGQFTIP-IVIRGP-GGVG 205 (407)
Q Consensus 145 ~~vg~A~GlA~~G---------------~rp~~~t~~~~f~~--ra~dqi~~~~a~~~~~~gg~~~lp-vvi~~~-~G~~ 205 (407)
..+..|.|+|++- -+.+++.+.-.-++ ..++.+. .++.. ++| ++++.. ++..
T Consensus 118 ~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~-~A~~~--------~L~~li~i~~nN~~~ 188 (669)
T 2r8o_A 118 QGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCS-LAGTL--------KLGKLIAFYDDNGIS 188 (669)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHH-HHHHT--------TCTTEEEEEEECSEE
T ss_pred chHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhcchHHHHHHH-HHHHc--------CCCcEEEEEECCCcE
Confidence 4456666766651 23444444544445 4567663 45543 777 666553 4432
Q ss_pred CCCCcCc---cchHHHHHccCCCcEEE-ee--CCHHHHHHHHHHHHh-cCCCEEEe
Q 015415 206 RQLGAEH---SQRLESYFQSIPGIQMV-AC--STPYNAKGLMKAAIR-SENPVILF 254 (407)
Q Consensus 206 ~~~G~tH---sq~~ea~~~~iPgl~V~-~P--~d~~e~~~~~~~a~~-~~~Pv~ir 254 (407)
-++++. ...+...+... ||.++ .. .|..++..+++.|.+ .++|++|.
T Consensus 189 -i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~ 242 (669)
T 2r8o_A 189 -IDGHVEGWFTDDTAMRFEAY-GWHVIRDIDGHDAASIKRAVEEARAVTDKPSLLM 242 (669)
T ss_dssp -TTEEGGGTCCCCHHHHHHHT-TCEEEEEEETTCHHHHHHHHHHHHHCCSSCEEEE
T ss_pred -eccccccccCccHHHHHHHC-CCeEEeEECCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 222222 23334566655 78777 33 389999999999987 58899885
No 84
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=67.16 E-value=3.2 Score=43.17 Aligned_cols=112 Identities=14% Similarity=0.122 Sum_probs=63.4
Q ss_pred CCceEecc-c-hhHHHHHHHHHHHhcC-CeeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCCC
Q 015415 133 DLRVLDTP-I-AENSFTGMGIGAAMTG-LRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQL 208 (407)
Q Consensus 133 p~R~i~~G-I-aE~~~vg~A~GlA~~G-~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~~ 208 (407)
|.+|+..+ . .=-..++.|.|++++. -+++++...-.-++..++.+. .+... ++|++++. .++.++-.
T Consensus 414 ~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~~~~~L~-ta~~~--------~l~~~ivv~nN~~~~~~ 484 (589)
T 2pgn_A 414 PRRLVTSMAEGILGCGFPMALGAQLAEPNSRVFLGTGDGALYYHFNEFR-VAVEH--------KLPVITMVFTNESYGAN 484 (589)
T ss_dssp TTCEESCTTTCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGHH-HHHHT--------TCCCEEEEEECSBCHHH
T ss_pred CCcEECCCCcchhhhHHHHHHHHHHhCCCCcEEEEEeeHHHHhhHHHHH-HHHHh--------CCCeEEEEEECCCcccc
Confidence 66888742 1 1223668888888874 355555444322333444442 23332 77866655 33321110
Q ss_pred C--------c---Cc--cchHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEe
Q 015415 209 G--------A---EH--SQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 209 G--------~---tH--sq~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
+ . +. .-.+..+.... |+..+...+++|+...++++++.++|++|-
T Consensus 485 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lie 542 (589)
T 2pgn_A 485 WTLMNHQFGQNNWTEFMNPDWVGIAKAF-GAYGESVRETGDIAGALQRAIDSGKPALIE 542 (589)
T ss_dssp HHHHHHHHSSCCSCBCCCCCHHHHHHHH-TCEEEECTTTCCHHHHHHHHHHHCSCEEEE
T ss_pred hHHHHhhcCCCccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 0 11 11233344433 566777889999999999999889999884
No 85
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=62.78 E-value=13 Score=32.44 Aligned_cols=67 Identities=13% Similarity=0.096 Sum_probs=45.7
Q ss_pred chhHHHHHHHHHH-HhhCCCCceEEEeccccc----------CchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHH
Q 015415 293 SRMRYHVMQAAKT-LVNKGYDPEVIDIRSLKP----------FDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAIT 360 (407)
Q Consensus 293 G~~~~~al~Aa~~-L~~~Gi~v~VI~~~~l~P----------fd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~ 360 (407)
|.....+..+++. |+++|.+++++|+..+.. =+.+.+.+.+..++.||++=.-+ .|++...+..++-
T Consensus 16 g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y-~~~~p~~lK~~ld 93 (197)
T 2vzf_A 16 STTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIY-KASYTGLLKAFLD 93 (197)
T ss_dssp CHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCcc-CCCCCHHHHHHHH
Confidence 3455666667788 888899999999876531 12344556677788877776665 4777777776664
No 86
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=61.75 E-value=12 Score=31.22 Aligned_cols=66 Identities=18% Similarity=0.119 Sum_probs=43.5
Q ss_pred CcEEEEEec----hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHh-cCCcEEEEecCccccchH
Q 015415 285 EHVTILTYS----RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIK-KTHRVLIVEECMRTGGIG 352 (407)
Q Consensus 285 ~dv~Iia~G----~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~-~~~~vvvvEe~~~~GGlG 352 (407)
.+++|+++| +....|.+|.+.|++.|++.+.+|+.. .|--.+.|.+... .+=.+|+++... .||+.
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~-d~~~~~~L~~~~G~~tvP~VfI~G~~-iGG~d 105 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQ-NPDIRAELPKYANWPTFPQLWVDGEL-VGGCD 105 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGG-CHHHHHHHHHHHTCCSSCEEEETTEE-EESHH
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCC-CHHHHHHHHHHHCCCCcCEEEECCEE-EEChH
Confidence 468888887 677899999999999999999999865 1211122322222 122466676654 58874
No 87
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=61.19 E-value=22 Score=31.03 Aligned_cols=121 Identities=14% Similarity=0.015 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHhcCCCEEEeecc---c-----cccCCCCCCCccccccCCceEEeecCCcEEEEEechhHHHHHHHHH
Q 015415 233 TPYNAKGLMKAAIRSENPVILFEHV---L-----LYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAK 304 (407)
Q Consensus 233 d~~e~~~~~~~a~~~~~Pv~ir~~r---~-----~y~~~~~v~~~~~~~~~Gk~~vl~eG~dv~Iia~G~~~~~al~Aa~ 304 (407)
+-+++.+++-+|+..++-+|+.=.. . .|+. .+++.- ..+.. ..-++++.-+.|++....-..+.+.++
T Consensus 23 ~I~~AA~llaqai~~~g~IyvfG~Ghs~~~~~e~~~~~-e~l~~~-~~~~~--~~~i~~~D~vii~S~Sg~n~~~ie~A~ 98 (170)
T 3jx9_A 23 ELFDVVRLLAQALVGQGKVYLDAYGEFEGLYPMLSDGP-DQMKRV-TKIKD--HKTLHAVDRVLIFTPDTERSDLLASLA 98 (170)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECGGGGGGTHHHHTST-TCCTTE-EECCT--TCCCCTTCEEEEEESCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCcHHHHHHHHHccc-CCccch-hhhhh--cCCCCCCCEEEEEeCCCCCHHHHHHHH
Confidence 3467888898999999999986211 0 1110 111100 00000 113566766777777777777899999
Q ss_pred HHhhCCCCceEEEecccccCchh--hHHHHHhcC-CcEEEEecCccccchHHHHHHHH
Q 015415 305 TLVNKGYDPEVIDIRSLKPFDLY--TIGNSIKKT-HRVLIVEECMRTGGIGASLTAAI 359 (407)
Q Consensus 305 ~L~~~Gi~v~VI~~~~l~Pfd~~--~l~~~~~~~-~~vvvvEe~~~~GGlGs~I~~~l 359 (407)
.++++|++ ||-+.+..+=+.. .|.+.+-.. +.++-.|++...|..+.-...++
T Consensus 99 ~ake~G~~--vIaITs~~~~~~~~~~L~d~an~~p~gll~~e~g~r~g~~Sti~~~~i 154 (170)
T 3jx9_A 99 RYDAWHTP--YSIITLGDVTETLERSIAPLALKFDKGLLPAEDGSRHGLPSLALGAFL 154 (170)
T ss_dssp HHHHHTCC--EEEEESSCCCTTGGGSSSCEECCCCSCSEECTTSCEECCCHHHHHHHH
T ss_pred HHHHCCCc--EEEEeCcchhccccCcHHHHHhCCCCCceECCCCCEechhHHHHHHHH
Confidence 99999877 5555565444332 222222111 22455566555554444333333
No 88
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=61.14 E-value=72 Score=26.66 Aligned_cols=83 Identities=14% Similarity=0.152 Sum_probs=46.6
Q ss_pred echhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCccccchHH-HHHHHHHhccccCCCCC
Q 015415 292 YSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGA-SLTAAITENFHDYLDAP 370 (407)
Q Consensus 292 ~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs-~I~~~l~e~~~~~~~~~ 370 (407)
+|+.-..|...++.|++.|++++++|+... |.+.+.+.+.+++.|++.=..+ .|.+-. .+...+....+ ...+
T Consensus 11 tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~---~~~~~~~~~~~~d~ii~Gspty-~g~~p~~~fl~~l~~~~l--~gk~ 84 (161)
T 3hly_A 11 YGYSDRLSQAIGRGLVKTGVAVEMVDLRAV---DPQELIEAVSSARGIVLGTPPS-QPSEAVATALSTIFAAAH--NKQA 84 (161)
T ss_dssp STTHHHHHHHHHHHHHHTTCCEEEEETTTC---CHHHHHHHHHHCSEEEEECCBS-SCCHHHHHHHHHHHHHCC--TTSE
T ss_pred ChHHHHHHHHHHHHHHhCCCeEEEEECCCC---CHHHHHHHHHhCCEEEEEcCCc-CCchhHHHHHHHHHhhhh--CCCE
Confidence 344556666677778888999999987653 4444545566677777665554 243331 22233322111 2345
Q ss_pred eEEeecCCCC
Q 015415 371 IVCLSSQDVP 380 (407)
Q Consensus 371 v~~ig~~d~~ 380 (407)
+..+|..+.+
T Consensus 85 v~~fgs~g~~ 94 (161)
T 3hly_A 85 IGLFDSYGGD 94 (161)
T ss_dssp EEEECCCCSS
T ss_pred EEEEEcCCCC
Confidence 6666655443
No 89
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=60.98 E-value=10 Score=39.10 Aligned_cols=145 Identities=13% Similarity=0.155 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhhh-CCCEEEEeCCCCCCCCccccchhhhhhhCCCceEeccc--hhHHHHHHHHHHHhcC-CeeEEEecc
Q 015415 91 EALREGLEEEMDR-DPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPI--AENSFTGMGIGAAMTG-LRPIVEGMN 166 (407)
Q Consensus 91 ~a~~~~L~~l~~~-d~~vvvi~aDl~~~~g~~~~~~~~~~~fgp~R~i~~GI--aE~~~vg~A~GlA~~G-~rp~~~t~~ 166 (407)
..+...|.+.+.+ +..++ +..|+|.+. +.. ..+ .|.+|+..+- +=-..+..|.|+|++- -+++++.+.
T Consensus 377 ~~v~~~l~~~l~~~~~~iv-~~~d~G~~~--~~~-~~~----~~~~~~~~~~~g~mG~~l~~A~G~ala~~~~~vv~i~G 448 (565)
T 2nxw_A 377 MDIARAVNDRVRAGQEPLL-IAADMGDCL--FTA-MDM----IDAGLMAPGYYAGMGFGVPAGIGAQCVSGGKRILTVVG 448 (565)
T ss_dssp HHHHHHHHHHHHTTCCCCE-EEECSSHHH--HHH-TTS----CCSCEECCTTTCCTTCHHHHHHHHHHHTTTCCEEEEEE
T ss_pred HHHHHHHHHhcccccCCEE-EEecchHHH--HHH-HhC----CCcEEEccCccccccccchHHHHHHHhCCCCcEEEEEe
Confidence 3455667676664 13333 245666421 110 111 2677775321 1112566788888762 355555444
Q ss_pred hhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cC-CCC-----CCCCc---CccchHHHHHccCCCcEEEeeCCHHH
Q 015415 167 MGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PG-GVG-----RQLGA---EHSQRLESYFQSIPGIQMVACSTPYN 236 (407)
Q Consensus 167 ~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~-G~~-----~~~G~---tHsq~~ea~~~~iPgl~V~~P~d~~e 236 (407)
-.-++..+..+ ..+.. .++|++++. .+ |.. ...+. .|.-.+..+...+ |+..+...+.+|
T Consensus 449 DG~~~~~~~~l-~ta~~--------~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~e 518 (565)
T 2nxw_A 449 DGAFQMTGWEL-GNCRR--------LGIDPIVILFNNASWEMLRTFQPESAFNDLDDWRFADMAAGM-GGDGVRVRTRAE 518 (565)
T ss_dssp HHHHHHHGGGG-GGHHH--------HTCCCEEEEEECSBCHHHHHHCTTCGGGBCCCCCHHHHTGGG-TSEEEEECBHHH
T ss_pred chHHHhhHHHH-HHHHH--------hCCCCEEEEEECCCCcEEeeecccCCCCcCCCCCHHHHHHHc-CCCEEEeCCHHH
Confidence 32222222222 12222 277866554 33 321 01111 1212344455544 677788899999
Q ss_pred HHHHHHHHHhcCCCE-EE
Q 015415 237 AKGLMKAAIRSENPV-IL 253 (407)
Q Consensus 237 ~~~~~~~a~~~~~Pv-~i 253 (407)
+..+++++++.++|+ +|
T Consensus 519 l~~al~~a~~~~gp~~li 536 (565)
T 2nxw_A 519 LKAALDKAFATRGRFQLI 536 (565)
T ss_dssp HHHHHHHHHHCCSSCEEE
T ss_pred HHHHHHHHHhcCCCeEEE
Confidence 999999999888887 44
No 90
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=60.71 E-value=14 Score=29.43 Aligned_cols=67 Identities=15% Similarity=0.030 Sum_probs=43.8
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHh-cCCcEEEEecCccccchH
Q 015415 284 GEHVTILTYS----RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIK-KTHRVLIVEECMRTGGIG 352 (407)
Q Consensus 284 G~dv~Iia~G----~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~-~~~~vvvvEe~~~~GGlG 352 (407)
..+++|++-| +....|.+|.+.|++.|++.+.+|+.. .|--.+.|.+... .+-..|.++... .||+-
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~-d~~~~~~l~~~~g~~tvP~ifi~g~~-iGG~d 86 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFS-DEEVRQGLKAYSSWPTYPQLYVSGEL-IGGLD 86 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGG-CHHHHHHHHHHHTCCSSCEEEETTEE-EECHH
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcC-CHHHHHHHHHHHCCCCCCEEEECCEE-EecHH
Confidence 4568888876 567889999999999999999999865 1111122222211 233466776655 58865
No 91
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=59.64 E-value=25 Score=34.84 Aligned_cols=72 Identities=15% Similarity=0.218 Sum_probs=50.8
Q ss_pred EEEEechh----HHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHH
Q 015415 288 TILTYSRM----RYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAIT 360 (407)
Q Consensus 288 ~Iia~G~~----~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~ 360 (407)
++|.|++| -..|...++.|+++|+.+.++++..+..-|...+.+.+.+++.+++-=..+ .|++-..+..++.
T Consensus 268 v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivlGspT~-~~~~~p~~~~~l~ 343 (410)
T 4dik_A 268 VTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTY-EAEIHPLMRFTLL 343 (410)
T ss_dssp EEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECCT-TSSSCHHHHHHHH
T ss_pred eeeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCCeEEEEeCCc-CCcCCHHHHHHHH
Confidence 44455555 456777778888899999999998888778777777777888877665554 4666555554443
No 92
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=59.47 E-value=13 Score=34.19 Aligned_cols=75 Identities=20% Similarity=0.121 Sum_probs=50.5
Q ss_pred CcEEEEEec-----hhHHHHHHHHHHHhhCCCCceEEEecccccCc--------hhhHHHHHhcCCcEEEEecCccccch
Q 015415 285 EHVTILTYS-----RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFD--------LYTIGNSIKKTHRVLIVEECMRTGGI 351 (407)
Q Consensus 285 ~dv~Iia~G-----~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd--------~~~l~~~~~~~~~vvvvEe~~~~GGl 351 (407)
.++++|... .....+..+++.+++.|++++++|+.-+..++ .+.+.+.+...+.||++=.-+ .+++
T Consensus 35 mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~Y-n~si 113 (247)
T 2q62_A 35 PRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPER-HGAM 113 (247)
T ss_dssp CEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEECS-SSSC
T ss_pred CeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCCC-CCCc
Confidence 356665432 23345566677788889999999998863221 344667788888887777666 4777
Q ss_pred HHHHHHHHH
Q 015415 352 GASLTAAIT 360 (407)
Q Consensus 352 Gs~I~~~l~ 360 (407)
...+..++-
T Consensus 114 pa~LKn~iD 122 (247)
T 2q62_A 114 TGIMKAQID 122 (247)
T ss_dssp CHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 777777664
No 93
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=58.95 E-value=20 Score=36.90 Aligned_cols=112 Identities=13% Similarity=0.055 Sum_probs=58.5
Q ss_pred CCceEeccc--hhHHHHHHHHHHHhcCC-eeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cC-CCC--
Q 015415 133 DLRVLDTPI--AENSFTGMGIGAAMTGL-RPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PG-GVG-- 205 (407)
Q Consensus 133 p~R~i~~GI--aE~~~vg~A~GlA~~G~-rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~-G~~-- 205 (407)
|.+|+..+- +=-..+.+|.|++++-. +++++...-.-++..+..+. .+... ++|++++. .+ |..
T Consensus 415 ~~~~~~~~~~g~mG~~l~~A~Gaala~~~~~vv~~~GDG~~~~~~~eL~-ta~~~--------~l~~~ivv~nN~~~~~~ 485 (570)
T 2vbf_A 415 NSRFIGQPLWGSIGYTFPAALGSQIADKESRHLLFIGDGSLQLTVQELG-LSIRE--------KLNPICFIINNDGYTVE 485 (570)
T ss_dssp TCEEECCTTTCCTTTHHHHHHHHHHHCTTSEEEEEEEHHHHHHHGGGHH-HHHHT--------TCCCEEEEEESSSCHHH
T ss_pred CCeEecCccchhhhhhHHHHHHHHHhCCCCcEEEEEcchhhhcCHHHHH-HHHHc--------CCCCEEEEEECCchHHH
Confidence 556763221 22345677888887742 55555444322233344442 23332 77866554 33 321
Q ss_pred C-CCCc------CccchHHHHHccCCCcE-----EEeeCCHHHHHHHHHHH-HhcCCCEEEe
Q 015415 206 R-QLGA------EHSQRLESYFQSIPGIQ-----MVACSTPYNAKGLMKAA-IRSENPVILF 254 (407)
Q Consensus 206 ~-~~G~------tHsq~~ea~~~~iPgl~-----V~~P~d~~e~~~~~~~a-~~~~~Pv~ir 254 (407)
+ ..|. .|.-.+..+.... |+. .+...+.+|+...++++ ...++|++|-
T Consensus 486 ~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~~~~~~v~~~~el~~al~~a~~~~~~p~lie 546 (570)
T 2vbf_A 486 REIHGPTQSYNDIPMWNYSKLPETF-GATEDRVVSKIVRTENEFVSVMKEAQADVNRMYWIE 546 (570)
T ss_dssp HHHSCTTCGGGCCCCCCGGGHHHHT-TCCTTTEEEEEECBHHHHHHHHHHHHHCTTSEEEEE
T ss_pred HHHhccCCCccCCCCCCHHHHHHHc-CCCcCCcceEEecCHHHHHHHHHHHHhcCCCcEEEE
Confidence 1 0110 1212233333332 443 56678999999999984 5678899873
No 94
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=58.78 E-value=19 Score=26.71 Aligned_cols=59 Identities=20% Similarity=0.140 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEeccccc-Cchh---hHHHHHhc------CCcEEEEecCccccchHH
Q 015415 295 MRYHVMQAAKTLVNKGYDPEVIDIRSLKP-FDLY---TIGNSIKK------THRVLIVEECMRTGGIGA 353 (407)
Q Consensus 295 ~~~~al~Aa~~L~~~Gi~v~VI~~~~l~P-fd~~---~l~~~~~~------~~~vvvvEe~~~~GGlGs 353 (407)
....+.+|.+.|++.|++.+.+|+..... -|.+ .|.+.... +=..|+++++...||+..
T Consensus 13 ~Cp~C~~ak~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v~i~~g~~igG~d~ 81 (87)
T 1aba_A 13 KCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGFDQ 81 (87)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEECTTSCEEESHHH
T ss_pred cCccHHHHHHHHHHcCCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEEEEECCEEEeCHHH
Confidence 55788889999999999999999875421 2322 23333322 224667744445688654
No 95
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=58.50 E-value=17 Score=38.12 Aligned_cols=97 Identities=12% Similarity=0.122 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcC------CeeEEEecchhHHH--HHHHHHHHhhhhhchhcCCccccc-EEEEe-cCCC--CCCCCcCcc
Q 015415 146 FTGMGIGAAMTG------LRPIVEGMNMGFLL--LAFNQISNNCGMLHYTSGGQFTIP-IVIRG-PGGV--GRQLGAEHS 213 (407)
Q Consensus 146 ~vg~A~GlA~~G------~rp~~~t~~~~f~~--ra~dqi~~~~a~~~~~~gg~~~lp-vvi~~-~~G~--~~~~G~tHs 213 (407)
.+++|.|+|++. -+.+++.+.-.-++ .+++.+. .++.. ++| ++++. .++. .+.....+.
T Consensus 126 gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~eG~~~Eal~-~A~~~--------~l~~livi~nnN~~~i~~~~~~~~~ 196 (616)
T 3mos_A 126 GLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMA-FASIY--------KLDNLVAILDINRLGQSDPAPLQHQ 196 (616)
T ss_dssp HHHHHHHHHHHHHHTSCCSCCEEEEEETGGGGSHHHHHHHH-HHHHT--------TCTTEEEEEEECSBCSSSBCTTTTC
T ss_pred ccHHHHHHHHHHHHhCCCCCEEEEEECccccccCcHHHHHH-HHHHc--------CCCcEEEEEECCCCCCcCCcccccC
Confidence 467777777762 14455544543344 5667663 45543 777 44343 3443 222222221
Q ss_pred -chHHHHHccCCCcEEEee--CCHHHHHHHHHHHHhcCCCEEEe
Q 015415 214 -QRLESYFQSIPGIQMVAC--STPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 214 -q~~ea~~~~iPgl~V~~P--~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
..+...+... ||.++.. .|.+++..+++.+ .++|++|.
T Consensus 197 ~~~~~~~~~a~-G~~~~~VdG~d~~~l~~al~~~--~~~P~lI~ 237 (616)
T 3mos_A 197 MDIYQKRCEAF-GWHAIIVDGHSVEELCKAFGQA--KHQPTAII 237 (616)
T ss_dssp HHHHHHHHHHT-TCEEEEEETTCHHHHHHHHHSC--CSSCEEEE
T ss_pred hHHHHHHHHHc-CCeEEEEcCCCHHHHHHHHHhc--CCCCEEEE
Confidence 1223566665 7877633 3677777777554 57899885
No 96
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=57.43 E-value=22 Score=34.73 Aligned_cols=99 Identities=20% Similarity=0.197 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhc----C-CeeEEEecch-hHHH-HHHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCCCCcCcc---
Q 015415 145 SFTGMGIGAAMT----G-LRPIVEGMNM-GFLL-LAFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQLGAEHS--- 213 (407)
Q Consensus 145 ~~vg~A~GlA~~----G-~rp~~~t~~~-~f~~-ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~~G~tHs--- 213 (407)
..+..|+|+|++ | -+++++.+.- .|.+ ..++.+ +.++.. ++|+++++ .++. +-..+++.
T Consensus 146 ~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal-~~A~~~--------~lpvi~vv~NN~~-gi~~~~~~~~~ 215 (368)
T 1w85_A 146 AQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGI-NFAGAF--------KAPAIFVVQNNRF-AISTPVEKQTV 215 (368)
T ss_dssp HHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHH-HHHHHT--------TCCEEEEEEECSE-ETTEEGGGTCS
T ss_pred ccccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHH-HHHHHH--------CcCEEEEEEcCCc-cceeccccccC
Confidence 445666777765 2 2344443342 2222 234555 334443 78998887 3442 11112111
Q ss_pred -chHHHHH--ccCCCcEEEeeCCHHHHHHHHHHHHh----cCCCEEEe
Q 015415 214 -QRLESYF--QSIPGIQMVACSTPYNAKGLMKAAIR----SENPVILF 254 (407)
Q Consensus 214 -q~~ea~~--~~iPgl~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir 254 (407)
..+.... -.+|++.| .-.|+.++..+++.|++ .++|++|-
T Consensus 216 ~~d~~~~a~a~G~~~~~V-dG~D~~av~~a~~~A~~~~r~~~gP~lIe 262 (368)
T 1w85_A 216 AKTLAQKAVAAGIPGIQV-DGMDPLAVYAAVKAARERAINGEGPTLIE 262 (368)
T ss_dssp CSCSGGGGGGTTCCEEEE-ETTCHHHHHHHHHHHHHHHHTTSCCEEEE
T ss_pred CCCHHHHHHHCCCCEEEE-cCCCHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 1121222 34666643 44589999999999986 47899984
No 97
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=56.44 E-value=19 Score=32.52 Aligned_cols=68 Identities=9% Similarity=0.010 Sum_probs=46.0
Q ss_pred chhHHHHHHHHHHHhhC-CCCceEEEeccccc---------------------CchhhHHHHHhcCCcEEEEecCccccc
Q 015415 293 SRMRYHVMQAAKTLVNK-GYDPEVIDIRSLKP---------------------FDLYTIGNSIKKTHRVLIVEECMRTGG 350 (407)
Q Consensus 293 G~~~~~al~Aa~~L~~~-Gi~v~VI~~~~l~P---------------------fd~~~l~~~~~~~~~vvvvEe~~~~GG 350 (407)
|.....+..+++.|++. |.+++++|+..+.+ -|.+.+.+.+..++.||+.=.-+ .++
T Consensus 15 s~T~~la~~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~AD~iI~~sP~y-~~~ 93 (242)
T 1sqs_A 15 SKTLEYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDIIIISSPVY-LQN 93 (242)
T ss_dssp CHHHHHHHHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSEEEEEEEEC-SSS
T ss_pred ChHHHHHHHHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHCCEEEEEcccc-ccC
Confidence 34455566677888777 99999999886532 12344556677888877776665 477
Q ss_pred hHHHHHHHHHh
Q 015415 351 IGASLTAAITE 361 (407)
Q Consensus 351 lGs~I~~~l~e 361 (407)
+...+..++-.
T Consensus 94 ~p~~lK~~iDr 104 (242)
T 1sqs_A 94 VSVDTKNFIER 104 (242)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 77777766643
No 98
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=56.34 E-value=19 Score=30.94 Aligned_cols=67 Identities=12% Similarity=0.185 Sum_probs=43.8
Q ss_pred chhHHHHHHHHHHHhhCCCCceEEEecccccCch-------------hhHHHHHhcCCcEEEEecCccccchHHHHHHHH
Q 015415 293 SRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDL-------------YTIGNSIKKTHRVLIVEECMRTGGIGASLTAAI 359 (407)
Q Consensus 293 G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~-------------~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l 359 (407)
|..-..|...++.|++.|++++++++... +.+. +.+.+.+.+++.||+.=.-+ .|++...+..++
T Consensus 17 g~T~~la~~i~~~l~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y-~~~~~~~lk~~l 94 (200)
T 2a5l_A 17 GATAEMARQIARGVEQGGFEARVRTVPAV-STECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTR-FGNMASPLKYFL 94 (200)
T ss_dssp SHHHHHHHHHHHHHHHTTCEEEEEBCCCE-EC-------------CCBCCHHHHHTCSEEEEEEECB-TTBCCHHHHHHH
T ss_pred ChHHHHHHHHHHHHhhCCCEEEEEEhhhc-cchhhhhccccccccCchhhHHHHHHCCEEEEEcChh-ccCccHHHHHHH
Confidence 45556677777888888999999998775 2111 01234566777777766655 377777777666
Q ss_pred Hh
Q 015415 360 TE 361 (407)
Q Consensus 360 ~e 361 (407)
-.
T Consensus 95 d~ 96 (200)
T 2a5l_A 95 DG 96 (200)
T ss_dssp HT
T ss_pred HH
Confidence 44
No 99
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=56.03 E-value=27 Score=28.17 Aligned_cols=64 Identities=14% Similarity=0.117 Sum_probs=44.3
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHhhCCCC-ceEEEecccccCchhhHHHHHh-----cCCcEEEEecCccccchHH
Q 015415 284 GEHVTILTYS----RMRYHVMQAAKTLVNKGYD-PEVIDIRSLKPFDLYTIGNSIK-----KTHRVLIVEECMRTGGIGA 353 (407)
Q Consensus 284 G~dv~Iia~G----~~~~~al~Aa~~L~~~Gi~-v~VI~~~~l~Pfd~~~l~~~~~-----~~~~vvvvEe~~~~GGlGs 353 (407)
..+++|++.+ +....|.+|.+.|++.|+. .+.+|+.. |.+ +++.++ .+=..|.++... .||+-.
T Consensus 19 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~----d~~-~~~~l~~~tg~~tvP~vfI~g~~-IGG~d~ 92 (118)
T 2wem_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLD----DPE-LRQGIKDYSNWPTIPQVYLNGEF-VGGCDI 92 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSS----CHH-HHHHHHHHHTCCSSCEEEETTEE-EESHHH
T ss_pred cCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCC----CHH-HHHHHHHHhCCCCcCeEEECCEE-EeChHH
Confidence 3579999988 4788899999999999994 99999863 333 222222 233466776655 588653
No 100
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=55.12 E-value=11 Score=29.52 Aligned_cols=67 Identities=18% Similarity=0.100 Sum_probs=43.6
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHh-cCCcEEEEecCccccchH
Q 015415 284 GEHVTILTYS----RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIK-KTHRVLIVEECMRTGGIG 352 (407)
Q Consensus 284 G~dv~Iia~G----~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~-~~~~vvvvEe~~~~GGlG 352 (407)
..+++|.+.| +....|.+|.+.|++.|++.+.+|+.. .|--.+.+.+... .+=.+|+++... .||+-
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~-~~~~~~~l~~~~g~~~vP~ifi~g~~-igG~d 85 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILE-DEEVRQGLKTFSNWPTYPQLYVRGDL-VGGLD 85 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSS-CHHHHHHHHHHHSCCSSCEEECSSSE-EECHH
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCC-CHHHHHHHHHHhCCCCCCEEEECCEE-EcCHH
Confidence 3568999888 677889999999999999999999865 1111122322222 222356666554 58864
No 101
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=54.84 E-value=26 Score=30.88 Aligned_cols=63 Identities=10% Similarity=-0.022 Sum_probs=45.3
Q ss_pred HHHHHHHHHhhCCCCceEEEeccccc---CchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHh
Q 015415 298 HVMQAAKTLVNKGYDPEVIDIRSLKP---FDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITE 361 (407)
Q Consensus 298 ~al~Aa~~L~~~Gi~v~VI~~~~l~P---fd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e 361 (407)
.+...++.+++.|.+++++|+..+.| .|.+.+.+.+..++.||+.=.-+ .+++-..+..++-.
T Consensus 18 l~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~~P~y-~~~~pa~lK~~iDr 83 (192)
T 3f2v_A 18 VHKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPIY-WFNCPPLLKQWLDE 83 (192)
T ss_dssp HHHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEECB-TTBCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEEcChh-hcCCCHHHHHHHHH
Confidence 34445566777798999999988765 45566677788899888877766 47777777666644
No 102
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=54.74 E-value=24 Score=31.13 Aligned_cols=61 Identities=16% Similarity=0.047 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHH
Q 015415 297 YHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAIT 360 (407)
Q Consensus 297 ~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~ 360 (407)
..+..+++.+++.|.+++++|+.. +.|.+.+.+.+..++.||+.=.-+ .+++-..+..++-
T Consensus 34 ~l~~~~~~~~~~~g~~v~~~dL~~--~~d~~~~~~~l~~AD~iV~~~P~y-~~s~pa~LK~~iD 94 (204)
T 2amj_A 34 TLTEVADGTLRDLGHDVRIVRADS--DYDVKAEVQNFLWADVVIWQMPGW-WMGAPWTVKKYID 94 (204)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSS--CCCHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCc--cccHHHHHHHHHhCCEEEEECCcc-ccCCCHHHHHHHH
Confidence 345556677777799999999875 667788888899999888777766 3677666665553
No 103
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=54.45 E-value=18 Score=34.15 Aligned_cols=75 Identities=20% Similarity=0.140 Sum_probs=49.5
Q ss_pred CcEEEEEec-----hhHHHHHHHHHHHhhCCCCceEEEecccccCc---------hhhHHHHHhcCCcEEEEecCccccc
Q 015415 285 EHVTILTYS-----RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFD---------LYTIGNSIKKTHRVLIVEECMRTGG 350 (407)
Q Consensus 285 ~dv~Iia~G-----~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd---------~~~l~~~~~~~~~vvvvEe~~~~GG 350 (407)
.++++|... .....+..+++.+++.|.++++||+.-+..++ .+.+.+.+...+.||++=.-+ .++
T Consensus 59 mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~Y-n~s 137 (279)
T 2fzv_A 59 VRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPER-HGQ 137 (279)
T ss_dssp CEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEE-TTE
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEcCcc-ccC
Confidence 456665432 23455666778888889999999998864222 234667777888877776655 467
Q ss_pred hHHHHHHHHH
Q 015415 351 IGASLTAAIT 360 (407)
Q Consensus 351 lGs~I~~~l~ 360 (407)
+...+..++-
T Consensus 138 ipg~LKn~ID 147 (279)
T 2fzv_A 138 ITSVMKAQID 147 (279)
T ss_dssp ECHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 7666666553
No 104
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=54.20 E-value=25 Score=34.83 Aligned_cols=96 Identities=18% Similarity=0.163 Sum_probs=50.6
Q ss_pred HHHHHHHHhc------CCeeEEEecchhHHH--HHHHHHHHhhhhhchhcCCcccccEEEEec-CCCCCCCCcCcc----
Q 015415 147 TGMGIGAAMT------GLRPIVEGMNMGFLL--LAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGVGRQLGAEHS---- 213 (407)
Q Consensus 147 vg~A~GlA~~------G~rp~~~t~~~~f~~--ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~~~~~G~tHs---- 213 (407)
+.+|+|+|++ +.++++. +.-.-++ ..++.+ +.++.. ++|+++++. ++.. -.++++.
T Consensus 168 lp~AvG~AlA~~~~~~~~~vv~~-~GDGa~~~G~~~Eal-~~A~~~--------~lpvi~vv~NN~~~-i~~~~~~~~~~ 236 (400)
T 2bfd_A 168 IPQAVGAAYAAKRANANRVVICY-FGEGAASEGDAHAGF-NFAATL--------ECPIIFFCRNNGYA-ISTPTSEQYRG 236 (400)
T ss_dssp HHHHHHHHHHHHHHTCCCCEEEE-EETTGGGSHHHHHHH-HHHHHT--------TCCEEEEEEECSEE-TTEEGGGTCSS
T ss_pred ccHHHHHHHhhhhhCCCCeEEEE-ECchhhhcChHHHHH-HHHHHH--------CcCEEEEEECCcee-eeecccccCCC
Confidence 4566777665 3344443 3422222 234555 344443 789998873 4421 1222221
Q ss_pred chHHHHHccCCCcEEEe--eCCHHHHHHHHHHHHh----cCCCEEEe
Q 015415 214 QRLESYFQSIPGIQMVA--CSTPYNAKGLMKAAIR----SENPVILF 254 (407)
Q Consensus 214 q~~ea~~~~iPgl~V~~--P~d~~e~~~~~~~a~~----~~~Pv~ir 254 (407)
..+....... |+.++. -.|+.++..+++.|.+ .++|++|-
T Consensus 237 ~d~~~~a~a~-G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe 282 (400)
T 2bfd_A 237 DGIAARGPGY-GIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIE 282 (400)
T ss_dssp STTGGGTGGG-TCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCHHHHHHHc-CCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 1121222222 444443 3478999999988886 58899885
No 105
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=53.04 E-value=20 Score=28.94 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=32.0
Q ss_pred echhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCc
Q 015415 292 YSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECM 346 (407)
Q Consensus 292 ~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~ 346 (407)
+|+.-..|...++.|++.|++++++|+....+ + .+.+++.|++.=..+
T Consensus 9 tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~---~----~l~~~d~iiig~pty 56 (138)
T 5nul_A 9 TGNTEKMAELIAKGIIESGKDVNTINVSDVNI---D----ELLNEDILILGCSAM 56 (138)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCCEEEEGGGCCH---H----HHTTCSEEEEEECCB
T ss_pred CchHHHHHHHHHHHHHHCCCeEEEEEhhhCCH---H----HHhhCCEEEEEcCcc
Confidence 45566667777778888899999999876532 2 244566666664443
No 106
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=52.83 E-value=62 Score=36.86 Aligned_cols=34 Identities=12% Similarity=0.073 Sum_probs=28.2
Q ss_pred ccCCCcEEEee-CCHHHHHHHHHHHHhcCCCEEEe
Q 015415 221 QSIPGIQMVAC-STPYNAKGLMKAAIRSENPVILF 254 (407)
Q Consensus 221 ~~iPgl~V~~P-~d~~e~~~~~~~a~~~~~Pv~ir 254 (407)
-+++++....+ .+++|+...++.|+.+++|++|-
T Consensus 1031 ~G~~~va~~~v~~~~~~l~~al~eAl~~~GP~lI~ 1065 (1231)
T 2c42_A 1031 YGYVYVATVSMGYSKQQFLKVLKEAESFPGPSLVI 1065 (1231)
T ss_dssp TSSSEEEEECTTTCHHHHHHHHHHHHHSSSCEEEE
T ss_pred CCCCEEEEEeccCCHHHHHHHHHHHHhcCCCEEEE
Confidence 34566666678 59999999999999999999984
No 107
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=51.92 E-value=27 Score=29.90 Aligned_cols=68 Identities=16% Similarity=0.176 Sum_probs=43.2
Q ss_pred chhHHHHHHHHHHHhhC------CCCceEEEecc--cccCch--------------------hhHHHHHhcCCcEEEEec
Q 015415 293 SRMRYHVMQAAKTLVNK------GYDPEVIDIRS--LKPFDL--------------------YTIGNSIKKTHRVLIVEE 344 (407)
Q Consensus 293 G~~~~~al~Aa~~L~~~------Gi~v~VI~~~~--l~Pfd~--------------------~~l~~~~~~~~~vvvvEe 344 (407)
|.....+...++.|++. |.+++++|+.. +.|++. +.+.+.+..++.||+.=.
T Consensus 14 ~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iI~~sP 93 (191)
T 1t0i_A 14 RVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSRIVNALDIIVFVTP 93 (191)
T ss_dssp CSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHHHHHTCSEEEEEEE
T ss_pred CchHHHHHHHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHHHHHHHhCCEEEEEec
Confidence 34445566666777765 78899999876 433322 235566777777777666
Q ss_pred CccccchHHHHHHHHHh
Q 015415 345 CMRTGGIGASLTAAITE 361 (407)
Q Consensus 345 ~~~~GGlGs~I~~~l~e 361 (407)
-+ .+++...+..++-.
T Consensus 94 ~y-~~~~p~~lK~~iD~ 109 (191)
T 1t0i_A 94 QY-NWGYPAALKNAIDR 109 (191)
T ss_dssp CB-TTBCCHHHHHHHHT
T ss_pred eE-CCCCCHHHHHHHHH
Confidence 55 36777777666643
No 108
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=50.51 E-value=24 Score=34.49 Aligned_cols=99 Identities=15% Similarity=0.189 Sum_probs=51.4
Q ss_pred HHHHHHHHHhc----C-CeeEEEecchhHHH--HHHHHHHHhhhhhchhcCCcccccEEEEec-CCCC--CCCCc-Cccc
Q 015415 146 FTGMGIGAAMT----G-LRPIVEGMNMGFLL--LAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGVG--RQLGA-EHSQ 214 (407)
Q Consensus 146 ~vg~A~GlA~~----G-~rp~~~t~~~~f~~--ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~~--~~~G~-tHsq 214 (407)
.+.+|+|+|++ | -+++++.+.-.-++ ..++.+ |.++.. ++|+++++. ++.. ..... +.+.
T Consensus 145 ~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Eal-n~A~~~--------~lpvi~vv~NN~~g~~t~~~~~~~~~ 215 (365)
T 2ozl_A 145 QVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAY-NMAALW--------KLPCIFICENNRYGMGTSVERAAAST 215 (365)
T ss_dssp HHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHH-HHHHHT--------TCCEEEEEEECSEETTEEHHHHCSCC
T ss_pred hhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHH-HHHHHH--------CcCEEEEEECCCcccCCCcccccCCC
Confidence 34556666655 2 24444433432222 245555 344443 789888873 4321 11000 0001
Q ss_pred hHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----cCCCEEEe
Q 015415 215 RLESYFQSIPGIQMVACSTPYNAKGLMKAAIR----SENPVILF 254 (407)
Q Consensus 215 ~~ea~~~~iPgl~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir 254 (407)
.+..-.-.+|++.| .-.|+.++..+++.|++ .++|++|-
T Consensus 216 ~~~~ra~g~p~~~V-dG~D~~av~~a~~~A~~~~r~~~gP~lIe 258 (365)
T 2ozl_A 216 DYYKRGDFIPGLRV-DGMDILCVREATRFAAAYCRSGKGPILME 258 (365)
T ss_dssp CGGGTTTTSCEEEE-ETTCHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CHHHHhCCCCEEEE-eCCCHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 11111124666543 44589999999988875 47899984
No 109
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=49.60 E-value=63 Score=26.18 Aligned_cols=80 Identities=8% Similarity=0.037 Sum_probs=47.8
Q ss_pred echhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHh-cCCcEEEEecCccc--cchHHHHHHHHHhccc-cCC
Q 015415 292 YSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIK-KTHRVLIVEECMRT--GGIGASLTAAITENFH-DYL 367 (407)
Q Consensus 292 ~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~-~~~~vvvvEe~~~~--GGlGs~I~~~l~e~~~-~~~ 367 (407)
+|+.-..|...++.|++.|++++++++....+-+ +. +++.|++.=..+-. |.+-..+..++..-.. ...
T Consensus 12 tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~-------l~~~~d~ii~g~pty~~~~G~~p~~~~~fl~~l~~~~l~ 84 (148)
T 3f6r_A 12 TGNTESIAQKLEELIAAGGHEVTLLNAADASAEN-------LADGYDAVLFGCSAWGMEDLEMQDDFLSLFEEFDRIGLA 84 (148)
T ss_dssp SSHHHHHHHHHHHHHHTTTCEEEEEETTTBCCTT-------TTTTCSEEEEEECEECSSSCEECHHHHHHHTTGGGTCCT
T ss_pred CchHHHHHHHHHHHHHhCCCeEEEEehhhCCHhH-------hcccCCEEEEEecccCCCCCCCcHHHHHHHHHhhccCCC
Confidence 3555566777777788889999999877654322 22 56777766555543 5666667666644210 112
Q ss_pred CCCeEEeecCC
Q 015415 368 DAPIVCLSSQD 378 (407)
Q Consensus 368 ~~~v~~ig~~d 378 (407)
..++..+|..|
T Consensus 85 ~k~~~vfg~G~ 95 (148)
T 3f6r_A 85 GRKVAAFASGD 95 (148)
T ss_dssp TCEEEEEEEEC
T ss_pred CCEEEEEEeCC
Confidence 34566666544
No 110
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=48.95 E-value=24 Score=26.60 Aligned_cols=69 Identities=12% Similarity=0.046 Sum_probs=40.4
Q ss_pred cEEEEEechhHHHH------HHHHHHHhhCCCCceEEEecccccCchhhHHHHHh---cCCcEEEEecCccccchHHHHH
Q 015415 286 HVTILTYSRMRYHV------MQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIK---KTHRVLIVEECMRTGGIGASLT 356 (407)
Q Consensus 286 dv~Iia~G~~~~~a------l~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~---~~~~vvvvEe~~~~GGlGs~I~ 356 (407)
+++|.++. ....+ .+|.+.|++.|+..+.+|+..- |-..+.+.+... .+=..|++++.. .||+- ++.
T Consensus 3 ~v~ly~~~-~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~-~~~~~~l~~~~g~~~~~vP~ifi~g~~-igG~d-~l~ 78 (93)
T 1t1v_A 3 GLRVYSTS-VTGSREIKSQQSEVTRILDGKRIQYQLVDISQD-NALRDEMRTLAGNPKATPPQIVNGNHY-CGDYE-LFV 78 (93)
T ss_dssp CEEEEECS-SCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSC-HHHHHHHHHHTTCTTCCSCEEEETTEE-EEEHH-HHH
T ss_pred CEEEEEcC-CCCCchhhHHHHHHHHHHHHCCCceEEEECCCC-HHHHHHHHHHhCCCCCCCCEEEECCEE-EeCHH-HHH
Confidence 45666543 33344 7888889999999999998742 212233333332 122467777765 58864 344
Q ss_pred HH
Q 015415 357 AA 358 (407)
Q Consensus 357 ~~ 358 (407)
+.
T Consensus 79 ~l 80 (93)
T 1t1v_A 79 EA 80 (93)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 111
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=48.73 E-value=25 Score=30.94 Aligned_cols=63 Identities=14% Similarity=0.241 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhhCCCCceEEEecccccCch----------hhHHHHHhcCCcEEEEecCccccchHHHHHHHH
Q 015415 296 RYHVMQAAKTLVNKGYDPEVIDIRSLKPFDL----------YTIGNSIKKTHRVLIVEECMRTGGIGASLTAAI 359 (407)
Q Consensus 296 ~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~----------~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l 359 (407)
.....+++..+.++|.+++++|+.-|-.||. +.+.+.++..+.+|++=.-+ .|++...+..++
T Consensus 18 ~~~la~~~~~~~~~~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~tPeY-n~s~pg~LKn~i 90 (190)
T 3u7r_A 18 NHKLMKVLQKLAEGRLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSDAVLAITPEY-NRSYPGMIKNAI 90 (190)
T ss_dssp HHHHHHHHHHHHTTTEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSSEEEEECCCB-TTBCCHHHHHHH
T ss_pred HHHHHHHHHHhccCCCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCCcEEEechhh-cccCCHHHHHHH
Confidence 3444455555666789999999887633433 23567788888877776655 366655554443
No 112
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=48.46 E-value=30 Score=33.72 Aligned_cols=105 Identities=16% Similarity=0.035 Sum_probs=53.7
Q ss_pred eccchhHHHHHHHHHHHhc----C-CeeEEEecch-hHHHH-HHHHHHHhhhhhchhcCCcccccEEEEe-cCCCCCCCC
Q 015415 138 DTPIAENSFTGMGIGAAMT----G-LRPIVEGMNM-GFLLL-AFNQISNNCGMLHYTSGGQFTIPIVIRG-PGGVGRQLG 209 (407)
Q Consensus 138 ~~GIaE~~~vg~A~GlA~~----G-~rp~~~t~~~-~f~~r-a~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~G~~~~~G 209 (407)
.+|+-+ +.++.|.|+|++ + -+++++.+.- .|.+- .+|-+. .++.. ++|+++++ .++ .+-.+
T Consensus 142 ~~g~lG-~~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Eal~-~A~~~--------~lpvi~vv~NN~-~gi~~ 210 (367)
T 1umd_A 142 VASPIA-SHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGIN-FAAVQ--------GAPAVFIAENNF-YAISV 210 (367)
T ss_dssp CCSSTT-TTHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHH-HHHHT--------TCSEEEEEEECS-EETTE
T ss_pred CCchhh-hhhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHHHH-HHHHh--------CcCEEEEEecCC-eeecc
Confidence 455444 334555555544 3 2344443332 22222 444453 34443 89988777 455 32222
Q ss_pred cCc----cchHHHHH--ccCCCcEEEeeCCHHHHHHHHHHHHh----cCCCEEEe
Q 015415 210 AEH----SQRLESYF--QSIPGIQMVACSTPYNAKGLMKAAIR----SENPVILF 254 (407)
Q Consensus 210 ~tH----sq~~ea~~--~~iPgl~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir 254 (407)
++. ...+.... -++|++. +.-.|..++..+++.|++ .++|++|-
T Consensus 211 ~~~~~~~~~d~~~~a~a~G~~~~~-Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe 264 (367)
T 1umd_A 211 DYRHQTHSPTIADKAHAFGIPGYL-VDGMDVLASYYVVKEAVERARRGEGPSLVE 264 (367)
T ss_dssp EHHHHCSSSCSGGGGGGTTSCEEE-EETTCHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred ChhhccCCCCHHHHHHHcCCcEEE-eCCCCHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 221 01121222 2466664 356778888777777765 47899884
No 113
>2e85_A Hydrogenase 3 maturation protease; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2i8l_A
Probab=48.30 E-value=43 Score=28.52 Aligned_cols=56 Identities=21% Similarity=0.091 Sum_probs=37.8
Q ss_pred cEEEEEechhH----HHHHHHHHHHhhCC-CCceEEEecccccCchhhHHHHHh--cCCcEEEEecC
Q 015415 286 HVTILTYSRMR----YHVMQAAKTLVNKG-YDPEVIDIRSLKPFDLYTIGNSIK--KTHRVLIVEEC 345 (407)
Q Consensus 286 dv~Iia~G~~~----~~al~Aa~~L~~~G-i~v~VI~~~~l~Pfd~~~l~~~~~--~~~~vvvvEe~ 345 (407)
+++|+++|+.. .....++++|+++. -+++++|..+.-+ +.+ ..+. +.+++|+||-.
T Consensus 5 ~~lVlGiGN~l~gDDG~G~~v~~~L~~~~~~~v~vid~gt~~~---~l~-~~l~~~~~d~lIiVDA~ 67 (159)
T 2e85_A 5 TDVLLCVGNSMMGDDGAGPLLAEKCAAAPKGNWVVIDGGSAPE---NDI-VAIRELRPTRLLIVDAT 67 (159)
T ss_dssp CEEEEEECCGGGGGGGHHHHHHHHHHHSCCTTCEEEECTTCSG---GGH-HHHHHHCCSEEEEEEEC
T ss_pred CEEEEEECCcccccccHHHHHHHHHhhhCCCCeEEEECCCCHH---HHH-HHHhcCCCCEEEEEEeC
Confidence 36899999865 34667888887652 2588999998633 222 3333 35888888864
No 114
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=47.99 E-value=1.1e+02 Score=24.94 Aligned_cols=109 Identities=13% Similarity=0.139 Sum_probs=61.8
Q ss_pred cEEEEEech-hHHHHHHHHHHHhhCCCCceEEEecccccCch--hhHHHHHhcC---Cc-EEEEecCccccchHHHHHHH
Q 015415 286 HVTILTYSR-MRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDL--YTIGNSIKKT---HR-VLIVEECMRTGGIGASLTAA 358 (407)
Q Consensus 286 dv~Iia~G~-~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~--~~l~~~~~~~---~~-vvvvEe~~~~GGlGs~I~~~ 358 (407)
.++|++.|. ......++++.+-.+ -.+..||+..=...+. +.+.+.+++. +. ++.+|-+++ . .++..
T Consensus 6 giiivsHG~~~A~~l~~~a~~i~G~-~~~~aid~~~~~~~~~~~~~i~~~i~~~d~~~GVLiL~DmGSp----~-n~a~~ 79 (130)
T 3gx1_A 6 EVIVMMHGRSTATSMVETVQELLSI-ESGIALDMPLTVEVKAMYEKLKQTVVKLNPVKGVLILSDMGSL----T-SFGNI 79 (130)
T ss_dssp EEEEEEESSSHHHHHHHHHHHHHTC-CCCEEEEECTTSCHHHHHHHHHHHHHTSCCTTCEEEEECSGGG----G-THHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHHHcCc-cCEEEEEecCCCCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCH----H-HHHHH
Confidence 488999999 888888999987655 5788888755332221 3455556653 33 455555332 2 23333
Q ss_pred HHhccccCCCCCeEEeecCCCCCCCHHHH-HHHcCCCHHHHHHHHHHH
Q 015415 359 ITENFHDYLDAPIVCLSSQDVPTPYAGTL-EEWTVVQPAQIVTAVEQL 405 (407)
Q Consensus 359 l~e~~~~~~~~~v~~ig~~d~~~~~~~~l-~~~~gl~~~~I~~~i~~l 405 (407)
+.+. ...++..+...+.+.-- +.. ....+-+-++|++.++++
T Consensus 80 l~~~----~~~~v~vI~gvnlpmll-ea~~~~~~~~~l~el~~~~~~~ 122 (130)
T 3gx1_A 80 LTEE----LGIRTKTVTMVSTPVVL-EAMRKASLGRGLEDIYQSCEQL 122 (130)
T ss_dssp HHHH----HCCCEEEECSCCHHHHH-HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHh----cCCCEEEEeCCCHHHHH-HHHHHhhcCCCHHHHHHHHHHH
Confidence 3332 12456666654432110 111 223445889999888765
No 115
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=47.83 E-value=42 Score=29.13 Aligned_cols=62 Identities=8% Similarity=0.098 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhhCCCCceEEEecccccCch----------hhHHHHHhcCCcEEEEecCccccchHHHHHHHH
Q 015415 296 RYHVMQAAKTLVNKGYDPEVIDIRSLKPFDL----------YTIGNSIKKTHRVLIVEECMRTGGIGASLTAAI 359 (407)
Q Consensus 296 ~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~----------~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l 359 (407)
...+..+++.++ .|.+++++|+.-+-.++. +.+.+.+...+.||+.=.-+ .+++...+..++
T Consensus 19 ~~la~~~~~~~~-~~~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~sP~y-~~~~p~~lK~~i 90 (192)
T 3fvw_A 19 RQLAKKAETIIG-DRAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIWIFSPVY-NYAIPGPVKNLL 90 (192)
T ss_dssp HHHHHHHHHHHT-TSSEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHCSEEEEECCCB-TTBCCHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCEEEEEeCccCCCCCcccccCCcHHHHHHHHHHHhCCEEEEECccc-ccCCCHHHHHHH
Confidence 344555666665 688999999987532332 34667788888888877766 467666665554
No 116
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=47.32 E-value=28 Score=30.39 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=48.7
Q ss_pred cEEEEE---echhHHHHHHHHHHHhhCCCCceEEEecccccC-----------------ch-hhHHHHHhcCCcEEEEec
Q 015415 286 HVTILT---YSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPF-----------------DL-YTIGNSIKKTHRVLIVEE 344 (407)
Q Consensus 286 dv~Iia---~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pf-----------------d~-~~l~~~~~~~~~vvvvEe 344 (407)
+++||. +|..-..|..+++.|++.|.+++++|+....|. |. +.+.+.+..++.||+.=.
T Consensus 8 kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii~gsP 87 (211)
T 1ydg_A 8 KLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSSP 87 (211)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEEEEEE
T ss_pred eEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCCEEEEEcC
Confidence 455543 345556677777888888999999998775111 11 223455667887777766
Q ss_pred CccccchHHHHHHHHHh
Q 015415 345 CMRTGGIGASLTAAITE 361 (407)
Q Consensus 345 ~~~~GGlGs~I~~~l~e 361 (407)
-+ .|++...+..++-.
T Consensus 88 ~y-~~~~~~~lk~~ld~ 103 (211)
T 1ydg_A 88 TR-FGGATSQMRAFIDT 103 (211)
T ss_dssp EE-TTEECHHHHHHHHT
T ss_pred cc-ccCccHHHHHHHHH
Confidence 55 47777777776644
No 117
>1cfz_A Hydrogenase 2 maturation protease; metzincins, nickel; 2.20A {Escherichia coli} SCOP: c.56.1.1 PDB: 2kml_A
Probab=46.04 E-value=28 Score=29.78 Aligned_cols=56 Identities=9% Similarity=0.088 Sum_probs=39.5
Q ss_pred cEEEEEechhH----HHHHHHHHHHhhC-C--CCceEEEecccccCchhhHHHHHhcCCcEEEEecC
Q 015415 286 HVTILTYSRMR----YHVMQAAKTLVNK-G--YDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEEC 345 (407)
Q Consensus 286 dv~Iia~G~~~----~~al~Aa~~L~~~-G--i~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~ 345 (407)
+++|+++|+.. .....++++|+++ . -+++++|..+.- + +. ...+.+++++++||--
T Consensus 2 ~ilVlGiGN~l~gDDG~G~~v~~~L~~~~~~p~~v~vid~gt~~-~--~l-~~~l~~~d~lIiVDA~ 64 (162)
T 1cfz_A 2 RILVLGVGNILLTDEAIGVRIVEALEQRYILPDYVEILDGGTAG-M--EL-LGDMANRDHLIIADAI 64 (162)
T ss_dssp CEEEEEESCTTBGGGGHHHHHHHHHHHHEECCTTEEEEEEETCC-G--GG-HHHHSSCSEEEEEEEC
T ss_pred CEEEEEECCcccccccHHHHHHHHHHhhCCCCCCeEEEECCCCH-H--HH-HHHHhCCCEEEEEEeh
Confidence 47899999865 3466777888764 2 368999999963 2 22 3456778899999864
No 118
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=45.27 E-value=62 Score=25.57 Aligned_cols=60 Identities=10% Similarity=0.085 Sum_probs=36.6
Q ss_pred chhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCccccchHHH--HHHHHH
Q 015415 293 SRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGAS--LTAAIT 360 (407)
Q Consensus 293 G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~--I~~~l~ 360 (407)
|..-..|...++.|+++|++++++++... |.+ .+.+++.|++.=..+- +|.-.. +..++.
T Consensus 11 GnT~~~a~~i~~~l~~~g~~v~~~~~~~~---~~~----~l~~~d~vi~g~p~y~-~~~~~~~~~~~fl~ 72 (137)
T 2fz5_A 11 GNTEAMANEIEAAVKAAGADVESVRFEDT---NVD----DVASKDVILLGCPAMG-SEELEDSVVEPFFT 72 (137)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEETTSC---CHH----HHHTCSEEEEECCCBT-TTBCCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhCCCeEEEEEcccC---CHH----HHhcCCEEEEEccccC-CCCCCHHHHHHHHH
Confidence 45556666677778788999999986654 322 2455777777655542 444333 555443
No 119
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=45.08 E-value=1.2e+02 Score=24.44 Aligned_cols=102 Identities=10% Similarity=0.055 Sum_probs=55.3
Q ss_pred CcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhccc
Q 015415 285 EHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFH 364 (407)
Q Consensus 285 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~~ 364 (407)
-.++|++.|.......+.++.+ |+ ++.. ..++.+.+.+.++..+ +++.-.. .-|+|-.+.+.+.-
T Consensus 33 ~~l~i~G~g~~~~~~~~~~~~~---~~-----~v~~-g~~~~~~~~~~~~~ad-v~v~ps~--~e~~~~~~~Eama~--- 97 (166)
T 3qhp_A 33 IVLLLKGKGPDEKKIKLLAQKL---GV-----KAEF-GFVNSNELLEILKTCT-LYVHAAN--VESEAIACLEAISV--- 97 (166)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH---TC-----EEEC-CCCCHHHHHHHHTTCS-EEEECCC--SCCCCHHHHHHHHT---
T ss_pred eEEEEEeCCccHHHHHHHHHHc---CC-----eEEE-eecCHHHHHHHHHhCC-EEEECCc--ccCccHHHHHHHhc---
Confidence 3566666666655555544444 44 3333 5566777888888776 4444332 35667677777752
Q ss_pred cCCCC-CeEE---eecCCCCCCCHHHHHHHcCCCHHHHHHHHHHHh
Q 015415 365 DYLDA-PIVC---LSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLC 406 (407)
Q Consensus 365 ~~~~~-~v~~---ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~ll 406 (407)
+. |+.. .+.....+..+..+ ..--+++++++++.+++
T Consensus 98 ---G~vPvi~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~i~~l~ 138 (166)
T 3qhp_A 98 ---GIVPVIANSPLSATRQFALDERSL--FEPNNAKDLSAKIDWWL 138 (166)
T ss_dssp ---TCCEEEECCTTCGGGGGCSSGGGE--ECTTCHHHHHHHHHHHH
T ss_pred ---CCCcEEeeCCCCchhhhccCCceE--EcCCCHHHHHHHHHHHH
Confidence 44 6654 11111222222110 01237788888887765
No 120
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=44.77 E-value=32 Score=27.73 Aligned_cols=42 Identities=12% Similarity=-0.033 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcC
Q 015415 294 RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKT 336 (407)
Q Consensus 294 ~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~ 336 (407)
+....+.+|.+.|++.|+..+++|+.. .|.+.+.|.+.+++.
T Consensus 8 ~~C~~c~ka~~~L~~~gi~~~~~di~~-~~~~~~el~~~l~~~ 49 (120)
T 3l78_A 8 PSCTSCRKARAWLNRHDVVFQEHNIMT-SPLSRDELLKILSYT 49 (120)
T ss_dssp SSCHHHHHHHHHHHHTTCCEEEEETTT-SCCCHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEeccc-CCCcHHHHHHHHhhc
Confidence 456789999999999999999999875 688888888877754
No 121
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=44.50 E-value=17 Score=31.45 Aligned_cols=63 Identities=16% Similarity=0.204 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhCCCCceEEEecccccCc-----------hhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHh
Q 015415 297 YHVMQAAKTLVNKGYDPEVIDIRSLKPFD-----------LYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITE 361 (407)
Q Consensus 297 ~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd-----------~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e 361 (407)
..+..+++.|+ .|.+++++|+..+..++ .+.+.+.+..++.||+.=.-+ .+++...+..++-.
T Consensus 24 ~la~~i~~~l~-~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP~y-~~~~p~~lK~~iD~ 97 (193)
T 1rtt_A 24 AALQEAIGLVP-PGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATPEY-NYSMAGVLKNAIDW 97 (193)
T ss_dssp HHHHHHHTTCC-TTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCEE-TTEECHHHHHHHHH
T ss_pred HHHHHHHHhcc-CCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEEEcccc-ccCcCHHHHHHHHH
Confidence 44444555555 68889999988753332 234556677788877776655 36666666665543
No 122
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=44.45 E-value=52 Score=32.58 Aligned_cols=97 Identities=11% Similarity=0.035 Sum_probs=50.0
Q ss_pred HHHHHHHHhc----C-CeeEEEecchhHHH--HHHHHHHHhhhhhchhcCCcccccEEEEec-CCCCCCCCcCc-----c
Q 015415 147 TGMGIGAAMT----G-LRPIVEGMNMGFLL--LAFNQISNNCGMLHYTSGGQFTIPIVIRGP-GGVGRQLGAEH-----S 213 (407)
Q Consensus 147 vg~A~GlA~~----G-~rp~~~t~~~~f~~--ra~dqi~~~~a~~~~~~gg~~~lpvvi~~~-~G~~~~~G~tH-----s 213 (407)
+.+|+|+|++ | -+.+++.+.-.-++ ..++-+ +.++.. ++|+++++. ++.. -..+++ .
T Consensus 187 lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal-~~A~~~--------~lpvi~Vv~NN~~g-i~~~~~~~~~~~ 256 (407)
T 1qs0_A 187 FVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTAL-TFAHVY--------RAPVILNVVNNQWA-ISTFQAIAGGES 256 (407)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHH-HHHHHH--------TCCEEEEEEECSEE-TTEEGGGGTTTT
T ss_pred hhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHH-HHHHHH--------CcCEEEEEECCCcc-eeeccccccCCC
Confidence 4566677665 2 23344433432222 234555 334443 899888773 4321 111111 1
Q ss_pred chHHHHH--ccCCCcEEEeeCCHHHHHHHHHHHHh----cCCCEEEe
Q 015415 214 QRLESYF--QSIPGIQMVACSTPYNAKGLMKAAIR----SENPVILF 254 (407)
Q Consensus 214 q~~ea~~--~~iPgl~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir 254 (407)
..+.... -.+|++. +.-.|+.++..+++.|++ .++|++|-
T Consensus 257 ~d~a~~a~a~G~~~~~-VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 302 (407)
T 1qs0_A 257 TTFAGRGVGCGIASLR-VDGNDFVAVYAASRWAAERARRGLGPSLIE 302 (407)
T ss_dssp CCSTHHHHHTTCEEEE-EETTCHHHHHHHHHHHHHHHHTTSCCEEEE
T ss_pred CCHHHHHHHcCCeEEE-EcCCCHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 1111222 2455543 234478899999988876 47899884
No 123
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=43.79 E-value=16 Score=31.20 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=24.6
Q ss_pred CcEEEEEechhHHHHHHHHHHHhhCCCCceEEEe
Q 015415 285 EHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDI 318 (407)
Q Consensus 285 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~ 318 (407)
.||+||+.|+.- +.+|..|.+.|++|.|++-
T Consensus 3 ~dV~IIGaGpaG---L~aA~~La~~G~~V~v~Ek 33 (336)
T 3kkj_A 3 VPIAIIGTGIAG---LSAAQALTAAGHQVHLFDK 33 (336)
T ss_dssp CCEEEECCSHHH---HHHHHHHHHTTCCEEEECS
T ss_pred CCEEEECcCHHH---HHHHHHHHHCCCCEEEEEC
Confidence 479999988744 3466678889999999984
No 124
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=43.74 E-value=28 Score=28.19 Aligned_cols=43 Identities=21% Similarity=0.223 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCC
Q 015415 294 RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTH 337 (407)
Q Consensus 294 ~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~ 337 (407)
+....+.+|.+.|+++|+..+++|+.. .|.+.+.|.+.+++.+
T Consensus 11 ~~C~~c~ka~~~L~~~gi~~~~~di~~-~~~~~~eL~~~l~~~g 53 (120)
T 3fz4_A 11 PKCSTCRRAKAELDDLAWDYDAIDIKK-NPPAASLIRNWLENSG 53 (120)
T ss_dssp SSCHHHHHHHHHHHHHTCCEEEEETTT-SCCCHHHHHHHHHHSC
T ss_pred CCChHHHHHHHHHHHcCCceEEEEecc-CchhHHHHHHHHHHcC
Confidence 466789999999999999999999876 6889999988888764
No 125
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=42.94 E-value=15 Score=37.69 Aligned_cols=112 Identities=13% Similarity=0.104 Sum_probs=57.1
Q ss_pred CCceEeccc--hhHHHHHHHHHHHhcC-C----eeEEEecchhHHHHHHHHHHHhhhhhchhcCCcccccEEEEe-cC-C
Q 015415 133 DLRVLDTPI--AENSFTGMGIGAAMTG-L----RPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRG-PG-G 203 (407)
Q Consensus 133 p~R~i~~GI--aE~~~vg~A~GlA~~G-~----rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~gg~~~lpvvi~~-~~-G 203 (407)
|.+|+..+- +=-..+++|.|+|++. . +++++...-.-++..++.+. .+... ++|++++. .+ |
T Consensus 403 ~~~~~~~~~~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~~~~~el~-ta~~~--------~l~~~ivv~nN~~ 473 (563)
T 2vk8_A 403 NTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEIS-TMIRW--------GLKPYLFVLNNDG 473 (563)
T ss_dssp SCEEECCTTTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHHGGGHH-HHHHT--------TCCCEEEEEESSS
T ss_pred CCeEEcccchhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcchHhhccHHHHH-HHHHc--------CCCcEEEEEECCc
Confidence 556664211 2224567778877763 1 55565444322233344442 23332 78866665 33 3
Q ss_pred CC--C-CCCcC------ccchHHHHHcc--CCCcEEEeeCCHHHHHHHHH-HHHhcC-CCEEE
Q 015415 204 VG--R-QLGAE------HSQRLESYFQS--IPGIQMVACSTPYNAKGLMK-AAIRSE-NPVIL 253 (407)
Q Consensus 204 ~~--~-~~G~t------Hsq~~ea~~~~--iPgl~V~~P~d~~e~~~~~~-~a~~~~-~Pv~i 253 (407)
.. . ..|.. |.-.+..+... ++.+..+...+.+|+..+++ .+++.+ +|++|
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~v~~~~el~~al~~~a~~~~~~p~li 536 (563)
T 2vk8_A 474 YTIQKLIHGPKAQYNEIQGWDHLSLLPTFGAKDYETHRVATTGEWDKLTQDKSFNDNSKIRMI 536 (563)
T ss_dssp CHHHHHHSCTTCGGGCCCCCCGGGHHHHTTCSSEEEEEECBHHHHHHHHTCTTTTSCSSEEEE
T ss_pred chhhhhhhCCCCCcccCCCCCHHHHHHHhCCCCCcEEEecCHHHHHHHHHHHHHhCCCCcEEE
Confidence 21 0 01111 11123223222 33223677789999999998 777755 58877
No 126
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=42.47 E-value=27 Score=28.30 Aligned_cols=49 Identities=12% Similarity=-0.037 Sum_probs=38.9
Q ss_pred EEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCC
Q 015415 287 VTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTH 337 (407)
Q Consensus 287 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~ 337 (407)
++|.+ -+....+.+|.+.|++.|+..+++|+.. .|.+.+.|.+.+++.+
T Consensus 6 i~iY~-~p~C~~c~ka~~~L~~~gi~~~~~di~~-~~~~~~eL~~~l~~~g 54 (120)
T 3gkx_A 6 TLFLQ-YPACSTCQKAKKWLIENNIEYTNRLIVD-DNPTVEELKAWIPLSG 54 (120)
T ss_dssp CEEEE-CTTCHHHHHHHHHHHHTTCCCEEEETTT-TCCCHHHHHHHHHHHT
T ss_pred EEEEE-CCCChHHHHHHHHHHHcCCceEEEeccc-CcCCHHHHHHHHHHcC
Confidence 34443 3566789999999999999999999876 6888888888877654
No 127
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=41.86 E-value=87 Score=28.22 Aligned_cols=87 Identities=11% Similarity=0.114 Sum_probs=50.1
Q ss_pred cEEEEEechhHHHHHHHHHHHhh---CCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCccccch---HHHHHHHH
Q 015415 286 HVTILTYSRMRYHVMQAAKTLVN---KGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGI---GASLTAAI 359 (407)
Q Consensus 286 dv~Iia~G~~~~~al~Aa~~L~~---~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGl---Gs~I~~~l 359 (407)
.-++|-||++...+.+.|+.|.+ .|+++.|+++.... .+. +.+.+.+|++=..+-.|-+ ...+.+.|
T Consensus 41 ~kv~IlYgS~tGnte~~A~~La~~l~~g~~v~v~~l~~~~---~~~----l~~~~~vI~~tsTyG~Ge~Pdna~~F~~~L 113 (219)
T 3hr4_A 41 VRVTILFATETGKSEALAWDLGALFSCAFNPKVVCMDKYR---LSC----LEEERLLLVVTSTFGNGDCPGNGEKLKKSL 113 (219)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHTTTSEEEEEEGGGCC---GGG----GGTCSEEEEEEECBTTTBCCGGGHHHHHHH
T ss_pred CcEEEEEECCchHHHHHHHHHHHHHHcCCCeEEEEcccCC---HhH----hccCCeEEEEEeccCCCcCCHHHHHHHHHH
Confidence 34566789888888877777654 47888888766543 222 3356677777655533433 33455555
Q ss_pred HhccccCCCCCeEEeecCCC
Q 015415 360 TENFHDYLDAPIVCLSSQDV 379 (407)
Q Consensus 360 ~e~~~~~~~~~v~~ig~~d~ 379 (407)
.+........++..+|+-|.
T Consensus 114 ~~~~~~l~~~~~aVfGlGds 133 (219)
T 3hr4_A 114 FMLKELNNKFRYAVFGLGSS 133 (219)
T ss_dssp HHCCCCSSCCEEEEEEEECT
T ss_pred HhcchhhcCCEEEEEeCCCc
Confidence 54210001345667777663
No 128
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=39.86 E-value=30 Score=28.01 Aligned_cols=49 Identities=14% Similarity=0.174 Sum_probs=39.4
Q ss_pred EEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCC
Q 015415 287 VTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTH 337 (407)
Q Consensus 287 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~ 337 (407)
++|.+ -+....+.+|.+.|++.|+..+.+|+.. .|.+.+.|.+.+++.+
T Consensus 7 i~iY~-~p~C~~c~ka~~~L~~~gi~~~~~di~~-~~~~~~eL~~~l~~~g 55 (121)
T 3rdw_A 7 VTIYH-NPRCSKSRETLALVEQQGITPQVVLYLE-TPPSVDKLKELLQQLG 55 (121)
T ss_dssp CEEEC-CTTCHHHHHHHHHHHTTTCCCEEECTTT-SCCCHHHHHHHHHHTT
T ss_pred EEEEE-CCCCHHHHHHHHHHHHcCCCcEEEeecc-CCCcHHHHHHHHHhcC
Confidence 44443 2566789999999999999999999876 6888888888887765
No 129
>3gdw_A Sigma-54 interaction domain protein; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=39.79 E-value=1.6e+02 Score=24.35 Aligned_cols=106 Identities=8% Similarity=0.086 Sum_probs=60.5
Q ss_pred cEEEEEech-hHHHHHHHHHHHhhCCCCceEEEecccccCc--hhhHHHHHhc-----CC-cEEEEecCccccchHHHHH
Q 015415 286 HVTILTYSR-MRYHVMQAAKTLVNKGYDPEVIDIRSLKPFD--LYTIGNSIKK-----TH-RVLIVEECMRTGGIGASLT 356 (407)
Q Consensus 286 dv~Iia~G~-~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd--~~~l~~~~~~-----~~-~vvvvEe~~~~GGlGs~I~ 356 (407)
.++|+++|. ......++++.+-.+ -.+..||++.=...+ .+.+.+.+++ .+ -++.+|-+ ... .++
T Consensus 6 giiIvtHG~s~A~~l~~~a~~i~G~-~~~~aid~~~~~~~~~~~~~i~~~i~~~~~d~g~GVLiL~DmG----Sp~-n~a 79 (139)
T 3gdw_A 6 GVFVLMHGDSTASSMLKTAQELLGT-SIGTAMNMPLTMEVQTMYEQLRNQVITQKESLNNGILLLTDMG----SLN-SFG 79 (139)
T ss_dssp EEEEEEESSSHHHHHHHHHHHHHTC-CCCEEEEECTTSCHHHHHHHHHHHHHTSTGGGTTCEEEEECSG----GGG-GHH
T ss_pred eEEEEcCCHHHHHHHHHHHHHHcCc-ccEEEEEccCCCCHHHHHHHHHHHHHhhcCCCCCCEEEEEeCC----CHH-HHH
Confidence 488999999 888888999887655 577788865543333 2445566654 23 35555553 322 223
Q ss_pred HHHHhccccCCCCCeEEeecCCCCCCCHHHHH-HHcCCCHHHHHHHH
Q 015415 357 AAITENFHDYLDAPIVCLSSQDVPTPYAGTLE-EWTVVQPAQIVTAV 402 (407)
Q Consensus 357 ~~l~e~~~~~~~~~v~~ig~~d~~~~~~~~l~-~~~gl~~~~I~~~i 402 (407)
..+.+. ...++..+...+.+.-- +... ...+.+-++|++.+
T Consensus 80 ~~l~~~----~~~~v~vI~gvnlpmll-ea~~~~~~~~~L~el~~~~ 121 (139)
T 3gdw_A 80 NMLFEE----TGIRTKAITMTSTMIVL-EAIRMASVGRSLEDIYQNI 121 (139)
T ss_dssp HHHHHH----HCCCEEEECSCCHHHHH-HHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHh----hCCCEEEEeCCCHHHHH-HHHHHhhcCCCHHHHHHHH
Confidence 333322 12456666654432110 2222 24577899998888
No 130
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=39.24 E-value=31 Score=28.52 Aligned_cols=47 Identities=13% Similarity=0.019 Sum_probs=33.9
Q ss_pred cCCceEEeecCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecc
Q 015415 274 NLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRS 320 (407)
Q Consensus 274 ~~Gk~~vl~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~ 320 (407)
|+|+.....+..++++|+-|+.+...+..++.|.+.|.++.++-.|+
T Consensus 8 P~G~~~~~~~~~~~llIaGG~GiaPl~sm~~~l~~~~~~v~l~g~R~ 54 (142)
T 3lyu_A 8 PLGTPVPMEKFGKILAIGAYTGIVEVYPIAKAWQEIGNDVTTLHVTF 54 (142)
T ss_dssp CCSCCBCCCCCSEEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred CCCCCccCCCCCeEEEEECcCcHHHHHHHHHHHHhcCCcEEEEEeCC
Confidence 34443333335689999999999888888888888887888773344
No 131
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=38.91 E-value=31 Score=27.80 Aligned_cols=64 Identities=20% Similarity=0.185 Sum_probs=43.5
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHhhCCCC---ceEEEecccccCchhhHHHHHh-----cCCcEEEEecCccccch
Q 015415 284 GEHVTILTYS----RMRYHVMQAAKTLVNKGYD---PEVIDIRSLKPFDLYTIGNSIK-----KTHRVLIVEECMRTGGI 351 (407)
Q Consensus 284 G~dv~Iia~G----~~~~~al~Aa~~L~~~Gi~---v~VI~~~~l~Pfd~~~l~~~~~-----~~~~vvvvEe~~~~GGl 351 (407)
..+++|++.| +....|..|.+.|++.|+. .+.+|+.. |. .+++.++ .+=..|.|.... .||.
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~----~~-~~~~~l~~~sg~~tvP~vfI~g~~-iGG~ 88 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLE----DP-ELREGIKEFSEWPTIPQLYVNKEF-IGGC 88 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTT----CH-HHHHHHHHHHTCCSSCEEEETTEE-EESH
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecC----CH-HHHHHHHHHhCCCCCCeEEECCEE-EecH
Confidence 4579999988 4788899999999999998 78888753 32 2333332 233456676655 5886
Q ss_pred HH
Q 015415 352 GA 353 (407)
Q Consensus 352 Gs 353 (407)
..
T Consensus 89 d~ 90 (121)
T 3gx8_A 89 DV 90 (121)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 132
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=38.75 E-value=43 Score=25.77 Aligned_cols=72 Identities=15% Similarity=0.152 Sum_probs=43.0
Q ss_pred CCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHH-h-cCCcEEEEecCccccchHHHHHHHH
Q 015415 284 GEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSI-K-KTHRVLIVEECMRTGGIGASLTAAI 359 (407)
Q Consensus 284 G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~-~-~~~~vvvvEe~~~~GGlGs~I~~~l 359 (407)
..+++|++. +....|.+|.+.|++.|+..+.+|+..-.+. .+.+.+.. . .+=..+++++.. .||+.. +.++.
T Consensus 15 ~~~v~vy~~-~~Cp~C~~ak~~L~~~~i~y~~idI~~~~~~-~~~l~~~~~g~~~vP~ifi~g~~-igG~d~-l~~~~ 88 (99)
T 3qmx_A 15 SAKIEIYTW-STCPFCMRALALLKRKGVEFQEYCIDGDNEA-REAMAARANGKRSLPQIFIDDQH-IGGCDD-IYALD 88 (99)
T ss_dssp CCCEEEEEC-TTCHHHHHHHHHHHHHTCCCEEEECTTCHHH-HHHHHHHTTTCCCSCEEEETTEE-EESHHH-HHHHH
T ss_pred CCCEEEEEc-CCChhHHHHHHHHHHCCCCCEEEEcCCCHHH-HHHHHHHhCCCCCCCEEEECCEE-EeChHH-HHHHH
Confidence 346777764 5568899999999999999999998652111 12232222 1 122455665544 588653 43343
No 133
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=38.55 E-value=25 Score=27.99 Aligned_cols=49 Identities=8% Similarity=-0.024 Sum_probs=38.1
Q ss_pred EEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCC
Q 015415 287 VTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTH 337 (407)
Q Consensus 287 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~ 337 (407)
++|.+. +....|.+|.+.|++.|++.+++|+.. .|++.+.+.+.+++.+
T Consensus 2 i~iY~~-~~C~~C~kak~~L~~~gi~~~~~di~~-~~~~~~~l~~~~~~~g 50 (114)
T 1rw1_A 2 YVLYGI-KACDTMKKARTWLDEHKVAYDFHDYKA-VGIDREHLRRWCAEHG 50 (114)
T ss_dssp EEEEEC-SSCHHHHHHHHHHHHTTCCEEEEEHHH-HCCCHHHHHHHHHHHC
T ss_pred EEEEEC-CCChHHHHHHHHHHHCCCceEEEeecC-CCCCHHHHHHHHHhCC
Confidence 344433 566889999999999999999999864 5888888887776655
No 134
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=38.05 E-value=58 Score=25.18 Aligned_cols=66 Identities=17% Similarity=0.204 Sum_probs=42.5
Q ss_pred CcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhc-----CCcEEEEecCccccchHH
Q 015415 285 EHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKK-----THRVLIVEECMRTGGIGA 353 (407)
Q Consensus 285 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~-----~~~vvvvEe~~~~GGlGs 353 (407)
.+++|++. +....|..|.+.|++.|+..+.+|+....|-+ +.+.+.+++ +=..+.+.... .||+..
T Consensus 19 ~~v~vy~~-~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~-~~~~~~l~~~~g~~tvP~ifi~g~~-igG~~~ 89 (113)
T 3rhb_A 19 NTVVIYSK-TWCSYCTEVKTLFKRLGVQPLVVELDQLGPQG-PQLQKVLERLTGQHTVPNVFVCGKH-IGGCTD 89 (113)
T ss_dssp SSEEEEEC-TTCHHHHHHHHHHHHTTCCCEEEEGGGSTTHH-HHHHHHHHHHHSCCSSCEEEETTEE-EESHHH
T ss_pred CCEEEEEC-CCChhHHHHHHHHHHcCCCCeEEEeecCCCCh-HHHHHHHHHHhCCCCcCEEEECCEE-EcCcHH
Confidence 34777665 66788999999999999999999987754322 223333321 22355565544 588654
No 135
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=37.45 E-value=2e+02 Score=24.70 Aligned_cols=70 Identities=17% Similarity=0.074 Sum_probs=45.4
Q ss_pred cEEEEEec-hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHh---c--CCcEEEEecCccccchHHHHHHH
Q 015415 286 HVTILTYS-RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIK---K--THRVLIVEECMRTGGIGASLTAA 358 (407)
Q Consensus 286 dv~Iia~G-~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~---~--~~~vvvvEe~~~~GGlGs~I~~~ 358 (407)
.+.||.-| +-...+.+|++.|++-|+..++ .+-++...+++. .++++ + .-+|+++=-+. .+.|..-|+..
T Consensus 4 ~V~Iimgs~SD~~v~~~a~~~l~~~gi~~ev-~V~saHR~p~~~-~~~~~~a~~~~~~~ViIa~AG~-aa~LpgvvA~~ 79 (159)
T 3rg8_A 4 LVIILMGSSSDMGHAEKIASELKTFGIEYAI-RIGSAHKTAEHV-VSMLKEYEALDRPKLYITIAGR-SNALSGFVDGF 79 (159)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHHTTCEEEE-EECCTTTCHHHH-HHHHHHHHTSCSCEEEEEECCS-SCCHHHHHHHH
T ss_pred eEEEEECcHHHHHHHHHHHHHHHHcCCCEEE-EEEcccCCHHHH-HHHHHHhhhcCCCcEEEEECCc-hhhhHHHHHhc
Confidence 46666555 4578899999999999988763 555666666543 33332 2 12566665555 47787777655
No 136
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=37.24 E-value=1.5e+02 Score=25.85 Aligned_cols=69 Identities=13% Similarity=0.003 Sum_probs=43.9
Q ss_pred CcEEEEEec-hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcC----CcEEEEecCccccchHHHHH
Q 015415 285 EHVTILTYS-RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKT----HRVLIVEECMRTGGIGASLT 356 (407)
Q Consensus 285 ~dv~Iia~G-~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~----~~vvvvEe~~~~GGlGs~I~ 356 (407)
..+.||.-| +-...+.+|++.|++-|+..++ .+-++...+++. .+++++. -+|+++=-+. .+.|..-|+
T Consensus 12 ~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv-~V~SaHR~p~~l-~~~~~~a~~~g~~ViIa~AG~-aa~LpgvvA 85 (170)
T 1xmp_A 12 SLVGVIMGSTSDWETMKYACDILDELNIPYEK-KVVSAHRTPDYM-FEYAETARERGLKVIIAGAGG-AAHLPGMVA 85 (170)
T ss_dssp CSEEEEESSGGGHHHHHHHHHHHHHTTCCEEE-EECCTTTSHHHH-HHHHHHTTTTTCCEEEEEEES-SCCHHHHHH
T ss_pred CcEEEEECcHHHHHHHHHHHHHHHHcCCCEEE-EEEeccCCHHHH-HHHHHHHHhCCCcEEEEECCc-hhhhHHHHH
Confidence 456666544 5678899999999999998664 555666666554 3444431 2455555544 366666555
No 137
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=36.34 E-value=90 Score=24.81 Aligned_cols=96 Identities=10% Similarity=0.005 Sum_probs=50.9
Q ss_pred cEEEEEechhH--HHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHHhcc
Q 015415 286 HVTILTYSRMR--YHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENF 363 (407)
Q Consensus 286 dv~Iia~G~~~--~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~e~~ 363 (407)
+++|++.+.|. -.+.+.-+..+++|+++++... ++.+ +.+.+.+++ |+.+=.+.. -.-.++.+...+
T Consensus 8 kIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~----~~~~--~~~~~~~~D-vvLLgPQV~--y~~~~ik~~~~~-- 76 (108)
T 3nbm_A 8 KVLVLCAGSGTSAQLANAINEGANLTEVRVIANSG----AYGA--HYDIMGVYD-LIILAPQVR--SYYREMKVDAER-- 76 (108)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEE----ETTS--CTTTGGGCS-EEEECGGGG--GGHHHHHHHHTT--
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEc----chHH--HHhhccCCC-EEEEChHHH--HHHHHHHHHhhh--
Confidence 46666665443 2233333445566999888652 2222 234455565 555544432 233444444322
Q ss_pred ccCCCCCeEEeecCCCCCCCHHHHHHHcC---CCHHHHHHHHHHHhC
Q 015415 364 HDYLDAPIVCLSSQDVPTPYAGTLEEWTV---VQPAQIVTAVEQLCQ 407 (407)
Q Consensus 364 ~~~~~~~v~~ig~~d~~~~~~~~l~~~~g---l~~~~I~~~i~~ll~ 407 (407)
.+.|+..|... .|| ++.+.+++.+.+.+|
T Consensus 77 ---~~ipV~vI~~~------------~Yg~~~~~g~~vl~~~~~~~~ 108 (108)
T 3nbm_A 77 ---LGIQIVATRGM------------EYIHLTKSPSKALQFVLEHYQ 108 (108)
T ss_dssp ---TTCEEEECCHH------------HHHHHHTCHHHHHHHHHHTCC
T ss_pred ---cCCcEEEeCHH------------HhhhhhCCHHHHHHHHHHhcC
Confidence 24555444321 133 799999999988765
No 138
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=35.83 E-value=9.2 Score=31.53 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=27.6
Q ss_pred eecCCcEEEEEechhHH--HHHHHHHHHhhCCCCceEEE
Q 015415 281 VRPGEHVTILTYSRMRY--HVMQAAKTLVNKGYDPEVID 317 (407)
Q Consensus 281 l~eG~dv~Iia~G~~~~--~al~Aa~~L~~~Gi~v~VI~ 317 (407)
+.++.|++||++|.... .--+..+.|++.||.+++.|
T Consensus 58 l~~~~evliiGtG~~~~~~~~~~~~~~l~~~gI~ve~m~ 96 (122)
T 2ab1_A 58 VEKGVQTLVIGRGMSEALKVPSSTVEYLKKHGIDVRVLQ 96 (122)
T ss_dssp HTTCCSEEEEEECSSCCSCCCHHHHHHHHHTTCEEEEEC
T ss_pred hhCCCCEEEECCCCCCccCCCHHHHHHHHHcCCEEEEeC
Confidence 45678999999997553 33455677889999988875
No 139
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=35.82 E-value=28 Score=29.15 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=37.4
Q ss_pred EEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcC
Q 015415 287 VTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKT 336 (407)
Q Consensus 287 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~ 336 (407)
++|.+ -+....|.+|.+.|+++|+..+++|+.. .|.+.+.|.+.+++.
T Consensus 4 itiY~-~p~C~~crkak~~L~~~gi~~~~idi~~-~~~~~~eL~~~~~~~ 51 (141)
T 1s3c_A 4 ITIYH-NPASGTSRNTLEMIRNSGTEPTIILYLE-NPPSRDELVKLIADM 51 (141)
T ss_dssp CEEEC-CTTCHHHHHHHHHHHHTTCCCEEECTTT-SCCCHHHHHHHHHHH
T ss_pred EEEEE-CCCChHHHHHHHHHHHcCCCEEEEECCC-CCccHHHHHHHhccc
Confidence 34433 2567889999999999999999999875 578888877776654
No 140
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=35.31 E-value=82 Score=25.67 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=23.6
Q ss_pred CcEEEEEechhHHHHHHHHHHHhhCCCCceEEEec
Q 015415 285 EHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIR 319 (407)
Q Consensus 285 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~ 319 (407)
.+++|+++|..... .++.|.+.|.++.+|+..
T Consensus 4 ~~vlI~G~G~vG~~---la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 4 DHFIVCGHSILAIN---TILQLNQRGQNVTVISNL 35 (153)
T ss_dssp SCEEEECCSHHHHH---HHHHHHHTTCCEEEEECC
T ss_pred CcEEEECCCHHHHH---HHHHHHHCCCCEEEEECC
Confidence 46888888766543 455677789999999874
No 141
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=35.04 E-value=2e+02 Score=25.07 Aligned_cols=71 Identities=15% Similarity=0.008 Sum_probs=45.2
Q ss_pred CcEEEEEec-hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhc----CCcEEEEecCccccchHHHHHHH
Q 015415 285 EHVTILTYS-RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKK----THRVLIVEECMRTGGIGASLTAA 358 (407)
Q Consensus 285 ~dv~Iia~G-~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~----~~~vvvvEe~~~~GGlGs~I~~~ 358 (407)
..+.||.-| +-...+.+|++.|++-|+..++ .+-++...+++. .+++++ .-+|+++=-+. .+.|..-|+..
T Consensus 13 ~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~ev-~V~SaHR~p~~~-~~~~~~a~~~g~~ViIa~AG~-aa~LpgvvA~~ 88 (174)
T 3kuu_A 13 VKIAIVMGSKSDWATMQFAADVLTTLNVPFHV-EVVSAHRTPDRL-FSFAEQAEANGLHVIIAGNGG-AAHLPGMLAAK 88 (174)
T ss_dssp CCEEEEESSGGGHHHHHHHHHHHHHTTCCEEE-EECCTTTCHHHH-HHHHHHTTTTTCSEEEEEEES-SCCHHHHHHHT
T ss_pred CcEEEEECcHHHHHHHHHHHHHHHHcCCCEEE-EEEcccCCHHHH-HHHHHHHHhCCCcEEEEECCh-hhhhHHHHHhc
Confidence 356676655 4578899999999999998764 555666666543 344442 12456555554 36777666543
No 142
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=34.72 E-value=49 Score=29.04 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhCCCCce-EEEecccccCc-----------hhhHHHHHhcCCcEEEEecCccccchHHHHHHHH
Q 015415 297 YHVMQAAKTLVNKGYDPE-VIDIRSLKPFD-----------LYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAI 359 (407)
Q Consensus 297 ~~al~Aa~~L~~~Gi~v~-VI~~~~l~Pfd-----------~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l 359 (407)
..+..+++.+ ++|.+++ ++|+.-+-.++ .+.+.+.++..+.||++=.-+ .+++...+..++
T Consensus 24 ~la~~~~~~~-~~g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~~~~i~~AD~iVi~tP~Y-~~s~p~~LK~~i 96 (199)
T 4hs4_A 24 AVARALPEIA-PEGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTPEY-NYSVPGVLKNAI 96 (199)
T ss_dssp HHHHHHHHHC-CTTEEEEECCCGGGSCCCCHHHHHHCCCHHHHHHHHHHHHSSEEEEEECCB-TTBCCHHHHHHH
T ss_pred HHHHHHHHHc-cCCCEEEEEEehhhcCCCCccccccCCCHHHHHHHHHHHhCCEEEEEcCcc-CCCcCHHHHHHH
Confidence 3344444555 4688888 89987762222 234666778888888777666 366655555444
No 143
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=34.52 E-value=2e+02 Score=24.99 Aligned_cols=71 Identities=20% Similarity=0.105 Sum_probs=45.3
Q ss_pred CcEEEEEec-hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHh----cCCcEEEEecCccccchHHHHHHH
Q 015415 285 EHVTILTYS-RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIK----KTHRVLIVEECMRTGGIGASLTAA 358 (407)
Q Consensus 285 ~dv~Iia~G-~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~----~~~~vvvvEe~~~~GGlGs~I~~~ 358 (407)
..+.||.-| +-...+.+|++.|++-|+..++ .+-+....+++. .++++ +.-+|+++=-+. .+.|..-|+..
T Consensus 7 ~~V~IimgS~SD~~v~~~a~~~l~~~gi~~ev-~V~SaHR~p~~~-~~~~~~a~~~g~~ViIa~AG~-aa~LpgvvA~~ 82 (169)
T 3trh_A 7 IFVAILMGSDSDLSTMETAFTELKSLGIPFEA-HILSAHRTPKET-VEFVENADNRGCAVFIAAAGL-AAHLAGTIAAH 82 (169)
T ss_dssp CEEEEEESCGGGHHHHHHHHHHHHHTTCCEEE-EECCTTTSHHHH-HHHHHHHHHTTEEEEEEEECS-SCCHHHHHHHT
T ss_pred CcEEEEECcHHhHHHHHHHHHHHHHcCCCEEE-EEEcccCCHHHH-HHHHHHHHhCCCcEEEEECCh-hhhhHHHHHhc
Confidence 356666655 4578899999999999998764 556666666543 34443 222456555554 36777666643
No 144
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=34.40 E-value=51 Score=28.21 Aligned_cols=68 Identities=13% Similarity=0.128 Sum_probs=45.3
Q ss_pred echhHHHHHHHHHHHhhCCCCceEEEecccccC----------c----hhhHHHHHhcCCcEEEEecCccccchHHHHHH
Q 015415 292 YSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPF----------D----LYTIGNSIKKTHRVLIVEECMRTGGIGASLTA 357 (407)
Q Consensus 292 ~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pf----------d----~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~ 357 (407)
+|..-..+..+++.|++.|.+++++|+...-|. | .+. .+.+.+++.||+.=.-+ .|++...+..
T Consensus 14 ~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~~-~~~l~~aD~ii~gsP~y-~~~~~~~lk~ 91 (199)
T 2zki_A 14 YGSIVELAKEIGKGAEEAGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEVT-LDDMRWADGFAIGSPTR-YGNMAGGLKT 91 (199)
T ss_dssp SSHHHHHHHHHHHHHHHHSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBCC-HHHHHHCSEEEEEEECB-TTBCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHhCCCEEEEEehhHhCChhhhhccCCCccccccccc-HHHHHhCCEEEEECCcc-ccCccHHHHH
Confidence 455556677777888888999999998775111 1 112 34566778777776665 4777777777
Q ss_pred HHHh
Q 015415 358 AITE 361 (407)
Q Consensus 358 ~l~e 361 (407)
++-.
T Consensus 92 ~ld~ 95 (199)
T 2zki_A 92 FLDT 95 (199)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 7654
No 145
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=34.32 E-value=1.7e+02 Score=30.64 Aligned_cols=84 Identities=11% Similarity=0.038 Sum_probs=51.6
Q ss_pred HHccCCCcEEEeeCCHHHHHHHHHHHHhcCCCEEEeeccccccCCCCCCC-cc----ccc---cCCceEEeecCCcEEEE
Q 015415 219 YFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPD-EE----YIC---NLEEAEMVRPGEHVTIL 290 (407)
Q Consensus 219 ~~~~iPgl~V~~P~d~~e~~~~~~~a~~~~~Pv~ir~~r~~y~~~~~v~~-~~----~~~---~~Gk~~vl~eG~dv~Ii 290 (407)
.++.+|.. |+.|.|.+|+..++++|.++.-|++.+-..-.+. ...++. .+ -.+ .+.+..-+.+....+.|
T Consensus 201 ~~~~~P~a-VV~P~s~eeV~~iv~~A~~~~ipVvprGgGTsl~-GG~~~~~~~~~ggVvLDlsrMnrIleiD~~~~~atV 278 (658)
T 4bby_A 201 MFERIPDI-VLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVS-YGLMCPADETRTIISLDTSQMNRILWVDENNLTAHV 278 (658)
T ss_dssp CCSCCCSE-EEECCSHHHHHHHHHHHHHTTCEEEEESSCCCSS-STTCCCTTCCSCEEEEECTTCCCEEEEETTTTEEEE
T ss_pred cccCCcCE-EEeeCCHHHHHHHHHHHHHCCCeEEEECCCcCCC-CCCCCCCCCCCcEEEEECccCCCcEEEcCCCCEEEE
Confidence 55678977 9999999999999999999999999872211100 001111 00 011 12222223455667777
Q ss_pred EechhHHHHHHHHH
Q 015415 291 TYSRMRYHVMQAAK 304 (407)
Q Consensus 291 a~G~~~~~al~Aa~ 304 (407)
-.|.......++++
T Consensus 279 eaGv~~~~L~~~L~ 292 (658)
T 4bby_A 279 EAGITGQELERQLK 292 (658)
T ss_dssp ETTCBHHHHHHHHH
T ss_pred ecCchHHHHHHHHH
Confidence 78887777666543
No 146
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=34.22 E-value=2.3e+02 Score=24.61 Aligned_cols=71 Identities=17% Similarity=0.052 Sum_probs=44.3
Q ss_pred CcEEEEEec-hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHh----cCCcEEEEecCccccchHHHHHHH
Q 015415 285 EHVTILTYS-RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIK----KTHRVLIVEECMRTGGIGASLTAA 358 (407)
Q Consensus 285 ~dv~Iia~G-~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~----~~~~vvvvEe~~~~GGlGs~I~~~ 358 (407)
.++.||.-| +-...+.+|++.|++-|+..++ .+-++...+++. .++++ +.-+|+++=-+. .+.|..-|+..
T Consensus 8 ~~V~IimgS~SD~~v~~~a~~~L~~~gi~~ev-~V~SaHR~p~~~-~~~~~~a~~~g~~ViIa~AG~-aa~LpgvvA~~ 83 (174)
T 3lp6_A 8 PRVGVIMGSDSDWPVMADAAAALAEFDIPAEV-RVVSAHRTPEAM-FSYARGAAARGLEVIIAGAGG-AAHLPGMVAAA 83 (174)
T ss_dssp CSEEEEESCGGGHHHHHHHHHHHHHTTCCEEE-EECCTTTCHHHH-HHHHHHHHHHTCCEEEEEEES-SCCHHHHHHHH
T ss_pred CeEEEEECcHHhHHHHHHHHHHHHHcCCCEEE-EEECCCCCHHHH-HHHHHHHHhCCCCEEEEecCc-hhhhHHHHHhc
Confidence 457676655 4578899999999999998653 555565566543 34432 222355555554 36777766654
No 147
>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A
Probab=34.19 E-value=68 Score=26.08 Aligned_cols=48 Identities=23% Similarity=0.146 Sum_probs=37.1
Q ss_pred EEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcC
Q 015415 287 VTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKT 336 (407)
Q Consensus 287 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~ 336 (407)
++|.+ .+....|.+|.+.|++.|++.+++|+.. .|.+.+.+.+.+++.
T Consensus 3 i~lY~-~~~C~~C~ka~~~L~~~gi~y~~~di~~-~~~~~~el~~~l~~~ 50 (132)
T 1z3e_A 3 VTLYT-SPSCTSCRKARAWLEEHEIPFVERNIFS-EPLSIDEIKQILRMT 50 (132)
T ss_dssp EEEEE-CTTCHHHHHHHHHHHHTTCCEEEEETTT-SCCCHHHHHHHHHTC
T ss_pred EEEEe-CCCChHHHHHHHHHHHcCCceEEEEccC-CCccHHHHHHHHHHc
Confidence 44443 3566889999999999999999999875 577778888777644
No 148
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=33.96 E-value=18 Score=28.98 Aligned_cols=35 Identities=14% Similarity=0.127 Sum_probs=25.7
Q ss_pred ecCCcEEEEE-ech--hHHHHHHHHHHHhhCCCCceEE
Q 015415 282 RPGEHVTILT-YSR--MRYHVMQAAKTLVNKGYDPEVI 316 (407)
Q Consensus 282 ~eG~dv~Iia-~G~--~~~~al~Aa~~L~~~Gi~v~VI 316 (407)
++|.++++++ .|. +.....+.++.+++.|+++++|
T Consensus 77 ~~G~~V~~l~d~GdP~i~~~~~~l~~~~~~~gi~v~vi 114 (117)
T 3hh1_A 77 EEGSDVALVTDAGTPAISDPGYTMASAAHAAGLPVVPV 114 (117)
T ss_dssp HTTCCEEEEEETTSCGGGSTTHHHHHHHHHTTCCEEEE
T ss_pred HCCCeEEEEecCCcCeEeccHHHHHHHHHHCCCcEEEe
Confidence 5688999999 673 3445556666777789998886
No 149
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=33.28 E-value=59 Score=27.77 Aligned_cols=60 Identities=5% Similarity=0.015 Sum_probs=34.0
Q ss_pred chhHHHHHHHHHHHhh-CCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHH
Q 015415 293 SRMRYHVMQAAKTLVN-KGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAIT 360 (407)
Q Consensus 293 G~~~~~al~Aa~~L~~-~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~ 360 (407)
|..-..|...++.|++ .|++++++++.... . +.+.+++.|++.=.-+ .|++...+..++.
T Consensus 16 GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~~---~----~~l~~aD~ii~gsP~y-~g~~~~~lk~fld 76 (188)
T 2ark_A 16 GNTKKMAELVAEGARSLEGTEVRLKHVDEAT---K----EDVLWADGLAVGSPTN-MGLVSWKMKRFFD 76 (188)
T ss_dssp SHHHHHHHHHHHHHHTSTTEEEEEEETTTCC---H----HHHHHCSEEEEEEECB-TTBCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhcCCCeEEEEEhhhCC---H----HHHHhCCEEEEEeCcc-CCcCCHHHHHHHH
Confidence 4455566677778887 88899999876642 1 1233344444444433 3455444444443
No 150
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=33.16 E-value=1.8e+02 Score=31.77 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHHHhc-CCCEEEe
Q 015415 233 TPYNAKGLMKAAIRS-ENPVILF 254 (407)
Q Consensus 233 d~~e~~~~~~~a~~~-~~Pv~ir 254 (407)
|..++..+++.|.+. .+|++|.
T Consensus 365 D~~~l~~a~~~A~~~~~~PtlI~ 387 (886)
T 2qtc_A 365 DPKKIYAAFKKAQETKGKATVIL 387 (886)
T ss_dssp CHHHHHHHHHHHHHCCSSCEEEE
T ss_pred CHHHHHHHHHHHHHcCCCCEEEE
Confidence 778888888888775 4899885
No 151
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=32.11 E-value=58 Score=29.29 Aligned_cols=65 Identities=14% Similarity=0.086 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEecccc--cC-------------------------------c--hhhHHHHHhcCCcE
Q 015415 295 MRYHVMQAAKTLVNKGYDPEVIDIRSLK--PF-------------------------------D--LYTIGNSIKKTHRV 339 (407)
Q Consensus 295 ~~~~al~Aa~~L~~~Gi~v~VI~~~~l~--Pf-------------------------------d--~~~l~~~~~~~~~v 339 (407)
....+..+++.|++.|.+++++|+..+. |. + ...+.+.++.++.|
T Consensus 17 t~~l~~~~~~~l~~~g~ev~~~dL~~~~~~P~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dd~~~~~~~l~~aD~i 96 (228)
T 3tem_A 17 NGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLV 96 (228)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCBCHHHHHHHHHHHHCSEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEhhhcCCcccCCHHHHhhhccccccccchhhhhhhhhcCCCcHHHHHHHHHHHhCCEE
Confidence 3455667778888889999999997653 32 1 11234457778888
Q ss_pred EEEecCccccchHHHHHHHHH
Q 015415 340 LIVEECMRTGGIGASLTAAIT 360 (407)
Q Consensus 340 vvvEe~~~~GGlGs~I~~~l~ 360 (407)
|+.=.-+ .+++-..+..++-
T Consensus 97 v~~~P~y-~~~~p~~lK~~iD 116 (228)
T 3tem_A 97 IFQFPLY-WFSVPAILKGWMD 116 (228)
T ss_dssp EEEEECB-TTBCCHHHHHHHH
T ss_pred EEECChh-hcccCHHHHHHHH
Confidence 7776665 4777776666654
No 152
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=32.09 E-value=56 Score=31.29 Aligned_cols=68 Identities=15% Similarity=0.114 Sum_probs=44.1
Q ss_pred EEEEech----hHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHH
Q 015415 288 TILTYSR----MRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAI 359 (407)
Q Consensus 288 ~Iia~G~----~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l 359 (407)
+++.|++ .-..|..+++.|++.|++++++++.. .+.+.+.+.+.+++.|++.=..+ .|++-..+..++
T Consensus 259 ~~i~~~S~~gnT~~la~~i~~~l~~~g~~v~~~~~~~---~~~~~~~~~l~~~d~iiigsP~y-~~~~~~~~k~~l 330 (404)
T 2ohh_A 259 VTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHE---DDRSEIVKDILESGAIALGAPTI-YDEPYPSVGDLL 330 (404)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEETTT---SCHHHHHHHHHTCSEEEEECCEE-TTEECTHHHHHH
T ss_pred EEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCC---CCHHHHHHHHHHCCEEEEECccc-cccchHHHHHHH
Confidence 3444554 45666777777877899898888654 45566666777888777765544 355544555544
No 153
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=32.05 E-value=65 Score=27.36 Aligned_cols=66 Identities=11% Similarity=0.137 Sum_probs=41.6
Q ss_pred chhHHHHHHHHHHHhh-CCCCceEEEecccccCch-------------hhHHHHHhcCCcEEEEecCccccchHHHHHHH
Q 015415 293 SRMRYHVMQAAKTLVN-KGYDPEVIDIRSLKPFDL-------------YTIGNSIKKTHRVLIVEECMRTGGIGASLTAA 358 (407)
Q Consensus 293 G~~~~~al~Aa~~L~~-~Gi~v~VI~~~~l~Pfd~-------------~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~ 358 (407)
|..-..|...++.|++ .|++++++++....|.+. .. .+.+.+++.||+.=.-+ .|++...+..+
T Consensus 13 g~t~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~aD~ii~gsP~y-~~~~~~~lk~~ 90 (198)
T 3b6i_A 13 GHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVAT-PQELADYDAIIFGTPTR-FGNMSGQMRTF 90 (198)
T ss_dssp SHHHHHHHHHHHHHHTSTTCEEEEEECCCCSCHHHHHHTTCCCCCSCBCC-GGGGGGCSEEEEEEEEE-TTEECHHHHHH
T ss_pred cHHHHHHHHHHHHHhhcCCCEEEEEEccccCchhhhhhcccccccCchhh-HHHHHHCCEEEEEeChh-cCCchHHHHHH
Confidence 5556667777888888 899999999986522110 01 24455666666665554 46666666665
Q ss_pred HH
Q 015415 359 IT 360 (407)
Q Consensus 359 l~ 360 (407)
+-
T Consensus 91 ld 92 (198)
T 3b6i_A 91 LD 92 (198)
T ss_dssp HT
T ss_pred HH
Confidence 53
No 154
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=32.02 E-value=50 Score=29.33 Aligned_cols=55 Identities=24% Similarity=0.305 Sum_probs=34.7
Q ss_pred CCcEEEEEechhH----HHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEE
Q 015415 284 GEHVTILTYSRMR----YHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLI 341 (407)
Q Consensus 284 G~dv~Iia~G~~~----~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvv 341 (407)
|+.+++|.|++.. .......+.|++-|+++.++++.. -+.+.+.+.+++.+.|++
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~---~~~~~~~~~l~~ad~I~l 85 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIAT---ESLGEITTKLRKNDFIYV 85 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT---SCHHHHHHHHHHSSEEEE
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC---CChHHHHHHHHhCCEEEE
Confidence 6789999887652 233334445556688888777655 244455566777776553
No 155
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=31.71 E-value=26 Score=28.33 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCC
Q 015415 294 RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTH 337 (407)
Q Consensus 294 ~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~ 337 (407)
+....+.+|.+.|+++|+..+.+|+.. .|.+.+.|.+.+++.+
T Consensus 12 p~C~~c~ka~~~L~~~gi~~~~~di~~-~~~t~~eL~~~l~~~g 54 (119)
T 3f0i_A 12 PKCSKSRETLALLENQGIAPQVIKYLE-TSPSVEELKRLYQQLG 54 (119)
T ss_dssp TTCHHHHHHHHHHHHTTCCCEEECHHH-HCCCHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHcCCceEEEEecc-CcCcHHHHHHHHHHcC
Confidence 466789999999999999999999876 6888888888777654
No 156
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=31.69 E-value=88 Score=26.52 Aligned_cols=67 Identities=12% Similarity=-0.012 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHHhhCC--CCceEEEeccc--ccCch------------------------hhHHHHHhcCCcEEEEecC
Q 015415 294 RMRYHVMQAAKTLVNKG--YDPEVIDIRSL--KPFDL------------------------YTIGNSIKKTHRVLIVEEC 345 (407)
Q Consensus 294 ~~~~~al~Aa~~L~~~G--i~v~VI~~~~l--~Pfd~------------------------~~l~~~~~~~~~vvvvEe~ 345 (407)
.....+...++.|++.| .+++++|+... .+++. +.+.+.+..++.||+.=.-
T Consensus 17 ~t~~la~~~~~~l~~~g~~~~v~~~dl~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~aD~iv~~~P~ 96 (201)
T 1t5b_A 17 QSGQLTDYFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDELIAELKAHDVIVIAAPM 96 (201)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHHHHHHHHHHHHHCSEEEEECCC
T ss_pred hHHHHHHHHHHHHHHhCCCCeEEEEeccCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHhCCEEEEEeCc
Confidence 34445556677787765 88999998764 22221 2344567778888877776
Q ss_pred ccccchHHHHHHHHHh
Q 015415 346 MRTGGIGASLTAAITE 361 (407)
Q Consensus 346 ~~~GGlGs~I~~~l~e 361 (407)
+ .+++...+..++-.
T Consensus 97 y-~~~~p~~lK~~iD~ 111 (201)
T 1t5b_A 97 Y-NFNIPTQLKNYFDL 111 (201)
T ss_dssp B-TTBCCHHHHHHHHH
T ss_pred c-cCcCCHHHHHHHHH
Confidence 6 47777777666643
No 157
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=31.57 E-value=1.1e+02 Score=29.44 Aligned_cols=61 Identities=21% Similarity=0.174 Sum_probs=40.0
Q ss_pred ecCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEeccc-------------ccCchhhHHHHHhcCCcEEEEecCc
Q 015415 282 RPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSL-------------KPFDLYTIGNSIKKTHRVLIVEECM 346 (407)
Q Consensus 282 ~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l-------------~Pfd~~~l~~~~~~~~~vvvvEe~~ 346 (407)
.+|+.+.|++.|..... .++.+++.|+++-++|...- ...|.+.+.+.+++.+ +++.|-..
T Consensus 12 ~~~k~IlIlG~G~~g~~---la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~d-vI~~~~e~ 85 (389)
T 3q2o_A 12 LPGKTIGIIGGGQLGRM---MALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISD-VVTYEFEN 85 (389)
T ss_dssp CTTSEEEEECCSHHHHH---HHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCS-EEEESCCC
T ss_pred CCCCEEEEECCCHHHHH---HHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCC-Eeeecccc
Confidence 46778999998875444 44445566999999986432 2245566777777765 56665543
No 158
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=31.19 E-value=39 Score=27.10 Aligned_cols=49 Identities=22% Similarity=0.196 Sum_probs=38.7
Q ss_pred EEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCC
Q 015415 287 VTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTH 337 (407)
Q Consensus 287 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~ 337 (407)
++|.+. +....|.+|.+.|++.|++.+++|+.. .|.+.+.+.+.+++.+
T Consensus 7 i~iY~~-~~C~~C~ka~~~L~~~gi~y~~~di~~-~~~~~~~l~~~~~~~g 55 (120)
T 2kok_A 7 VTIYGI-KNCDTMKKARIWLEDHGIDYTFHDYKK-EGLDAETLDRFLKTVP 55 (120)
T ss_dssp EEEEEC-SSCHHHHHHHHHHHHHTCCEEEEEHHH-HCCCHHHHHHHHHHSC
T ss_pred EEEEEC-CCChHHHHHHHHHHHcCCcEEEEeeeC-CCCCHHHHHHHHHHcC
Confidence 555543 455789999999999999999999864 4788888888877766
No 159
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.09 E-value=64 Score=25.30 Aligned_cols=65 Identities=9% Similarity=0.038 Sum_probs=37.9
Q ss_pred cEEEEEechhHHHHH------HHHHHHhhCCCCceEEEecccccCchhhHHHHH--------h-cCCcEEEEecCccccc
Q 015415 286 HVTILTYSRMRYHVM------QAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSI--------K-KTHRVLIVEECMRTGG 350 (407)
Q Consensus 286 dv~Iia~G~~~~~al------~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~--------~-~~~~vvvvEe~~~~GG 350 (407)
.++|.+. +....+. +|.+.|++.|++.+.+|+.. .|-..+.+.+.. . .+=.+|++++.. .||
T Consensus 9 ~V~vy~~-~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~-~~~~~~~l~~~~~~~~~~~~g~~tvP~vfi~g~~-iGG 85 (111)
T 2ct6_A 9 VIRVFIA-SSSGFVAIKKKQQDVVRFLEANKIEFEEVDITM-SEEQRQWMYKNVPPEKKPTQGNPLPPQIFNGDRY-CGD 85 (111)
T ss_dssp CEEEEEC-SSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTT-CHHHHHHHHHSCCTTTCCSSSSCCSCEEEETTEE-EEE
T ss_pred EEEEEEc-CCCCCcccchhHHHHHHHHHHcCCCEEEEECCC-CHHHHHHHHHHhcccccccCCCCCCCEEEECCEE-EeC
Confidence 4666654 3334455 78888999999999999875 221112233322 1 012467777665 478
Q ss_pred hHH
Q 015415 351 IGA 353 (407)
Q Consensus 351 lGs 353 (407)
+-.
T Consensus 86 ~d~ 88 (111)
T 2ct6_A 86 YDS 88 (111)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 160
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=30.59 E-value=2.6e+02 Score=24.04 Aligned_cols=71 Identities=8% Similarity=-0.048 Sum_probs=45.7
Q ss_pred CcEEEEEec-hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhc----CCcEEEEecCccccchHHHHHHH
Q 015415 285 EHVTILTYS-RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKK----THRVLIVEECMRTGGIGASLTAA 358 (407)
Q Consensus 285 ~dv~Iia~G-~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~----~~~vvvvEe~~~~GGlGs~I~~~ 358 (407)
.++.||.-| +-...+.+|++.|++-|+..++ .+-++...+++. .++++. .-+|+++=-+. .+.|..-|+..
T Consensus 4 ~~V~Iimgs~SD~~v~~~a~~~l~~~gi~~ev-~V~SaHR~p~~~-~~~~~~a~~~g~~ViIa~AG~-aa~LpgvvA~~ 79 (163)
T 3ors_A 4 MKVAVIMGSSSDWKIMQESCNMLDYFEIPYEK-QVVSAHRTPKMM-VQFASEARERGINIIIAGAGG-AAHLPGMVASL 79 (163)
T ss_dssp CCEEEEESCGGGHHHHHHHHHHHHHTTCCEEE-EECCTTTSHHHH-HHHHHHTTTTTCCEEEEEEES-SCCHHHHHHHH
T ss_pred CeEEEEECcHHHHHHHHHHHHHHHHcCCCEEE-EEECCcCCHHHH-HHHHHHHHhCCCcEEEEECCc-hhhhHHHHHhc
Confidence 356666554 4578899999999999998764 566666666543 344432 12456555554 37777777654
No 161
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=30.44 E-value=1e+02 Score=24.46 Aligned_cols=32 Identities=9% Similarity=0.079 Sum_probs=23.4
Q ss_pred CCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEe
Q 015415 284 GEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDI 318 (407)
Q Consensus 284 G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~ 318 (407)
...++|+++|.+- ...++.|.++|.++.++|.
T Consensus 6 ~~~v~I~G~G~iG---~~la~~L~~~g~~V~~id~ 37 (141)
T 3llv_A 6 RYEYIVIGSEAAG---VGLVRELTAAGKKVLAVDK 37 (141)
T ss_dssp CCSEEEECCSHHH---HHHHHHHHHTTCCEEEEES
T ss_pred CCEEEEECCCHHH---HHHHHHHHHCCCeEEEEEC
Confidence 3568888888743 3456677788999988885
No 162
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=30.36 E-value=2.6e+02 Score=24.56 Aligned_cols=71 Identities=21% Similarity=0.062 Sum_probs=43.9
Q ss_pred CcEEEEEec-hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhc----CCcEEEEecCccccchHHHHHHH
Q 015415 285 EHVTILTYS-RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKK----THRVLIVEECMRTGGIGASLTAA 358 (407)
Q Consensus 285 ~dv~Iia~G-~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~----~~~vvvvEe~~~~GGlGs~I~~~ 358 (407)
..+.||.-| +-...+.+|++.|++-|+..++ .+-++...+++. .++++. .-+|+++=-+. .+.|..-|+..
T Consensus 14 ~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv-~V~SaHR~p~~l-~~~~~~a~~~g~~ViIa~AG~-aa~LpgvvA~~ 89 (183)
T 1o4v_A 14 PRVGIIMGSDSDLPVMKQAAEILEEFGIDYEI-TIVSAHRTPDRM-FEYAKNAEERGIEVIIAGAGG-AAHLPGMVASI 89 (183)
T ss_dssp CEEEEEESCGGGHHHHHHHHHHHHHTTCEEEE-EECCTTTCHHHH-HHHHHHTTTTTCCEEEEEEES-SCCHHHHHHHH
T ss_pred CeEEEEeccHHHHHHHHHHHHHHHHcCCCeEE-EEEcccCCHHHH-HHHHHHHHhCCCcEEEEecCc-ccccHHHHHhc
Confidence 356666544 5678899999999998988654 455555566543 344442 12466555554 36777666654
No 163
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=30.31 E-value=50 Score=26.74 Aligned_cols=79 Identities=14% Similarity=0.200 Sum_probs=42.1
Q ss_pred chhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhc-CCcEEEEecCccccc--hHHHHHHHHHhccc-cCCC
Q 015415 293 SRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKK-THRVLIVEECMRTGG--IGASLTAAITENFH-DYLD 368 (407)
Q Consensus 293 G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~-~~~vvvvEe~~~~GG--lGs~I~~~l~e~~~-~~~~ 368 (407)
|..-..|...++.|+++|++++++++....|- .+.+ ++.|+++=..+-.|- +-..+..++..... ....
T Consensus 12 Gnt~~~a~~i~~~l~~~g~~v~~~~~~~~~~~-------~l~~~~d~ii~~~p~y~~g~~~~p~~~~~fl~~l~~~~l~~ 84 (147)
T 1f4p_A 12 GNTEYTAETIARELADAGYEVDSRDAASVEAG-------GLFEGFDLVLLGCSTWGDDSIELQDDFIPLFDSLEETGAQG 84 (147)
T ss_dssp SHHHHHHHHHHHHHHHHTCEEEEEEGGGCCST-------TTTTTCSEEEEEECEECSSSCEECTTTHHHHHTGGGSCCTT
T ss_pred CHHHHHHHHHHHHHHhcCCeeEEEehhhCCHH-------HhcCcCCEEEEEeCCCCCCCcCCChhHHHHHHHHHhcccCC
Confidence 44445566666677777999999998765432 1445 666766654442233 33344444432110 1113
Q ss_pred CCeEEeecCC
Q 015415 369 APIVCLSSQD 378 (407)
Q Consensus 369 ~~v~~ig~~d 378 (407)
.++..+|..+
T Consensus 85 k~~~v~~~g~ 94 (147)
T 1f4p_A 85 RKVACFGCGD 94 (147)
T ss_dssp CEEEEEEEEC
T ss_pred CEEEEEeecC
Confidence 4555565543
No 164
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=30.27 E-value=1.6e+02 Score=22.89 Aligned_cols=66 Identities=17% Similarity=0.271 Sum_probs=41.5
Q ss_pred CCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHh-----cCCcEEEEecCccccchHH
Q 015415 284 GEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIK-----KTHRVLIVEECMRTGGIGA 353 (407)
Q Consensus 284 G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~-----~~~~vvvvEe~~~~GGlGs 353 (407)
..+++|++. +....|..|.+.|++.|+..+.+|+.... |.+.+.+.++ .+=..+.+... ..||+..
T Consensus 16 ~~~v~vy~~-~~Cp~C~~ak~~L~~~~i~~~~~dvd~~~--~~~~~~~~l~~~~g~~tvP~vfi~g~-~igG~d~ 86 (114)
T 3h8q_A 16 RSRVVIFSK-SYCPHSTRVKELFSSLGVECNVLELDQVD--DGARVQEVLSEITNQKTVPNIFVNKV-HVGGCDQ 86 (114)
T ss_dssp HCSEEEEEC-TTCHHHHHHHHHHHHTTCCCEEEETTTST--THHHHHHHHHHHHSCCSSCEEEETTE-EEESHHH
T ss_pred cCCEEEEEc-CCCCcHHHHHHHHHHcCCCcEEEEecCCC--ChHHHHHHHHHHhCCCccCEEEECCE-EEeCHHH
Confidence 345777665 66788999999999999999999976531 2223333231 12235566444 4688653
No 165
>3pu6_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.60A {Wolinella succinogenes}
Probab=30.00 E-value=97 Score=26.25 Aligned_cols=56 Identities=5% Similarity=0.014 Sum_probs=36.3
Q ss_pred cEEEEEechhH----HHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHh--cCCcEEEEecC
Q 015415 286 HVTILTYSRMR----YHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIK--KTHRVLIVEEC 345 (407)
Q Consensus 286 dv~Iia~G~~~----~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~--~~~~vvvvEe~ 345 (407)
+++|+++|+.. .....++++|++.=-+++++|.-+ .|++. + ..++ +++++++||-.
T Consensus 4 ~ilVlGiGN~L~gDDG~G~~v~~~L~~~~p~v~vid~Gt-~~~~l--~-~~l~~~~~d~lIiVDA~ 65 (157)
T 3pu6_A 4 KKVLLCVGNELRGDDGVAIALGRLVEEQMPEWSVFFGYD-TPESE--F-GKLRELAPDVIVVADAM 65 (157)
T ss_dssp CEEEEEECCTTBGGGGHHHHHHHHHHHHCTTEEEEEEET-CGGGG--H-HHHHHHCCSEEEEEEEE
T ss_pred CEEEEEECCcccccccHHHHHHHHHHhhCCCeEEEECCC-CHHHH--H-HHHHhcCCCEEEEEEec
Confidence 57899999865 345567777763212789999887 35542 2 3344 47888888754
No 166
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=29.62 E-value=83 Score=27.11 Aligned_cols=66 Identities=11% Similarity=0.112 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHhhCC--CCceEEEec--cc--ccCch-----------------------------hhHHHHHhcCCcE
Q 015415 295 MRYHVMQAAKTLVNKG--YDPEVIDIR--SL--KPFDL-----------------------------YTIGNSIKKTHRV 339 (407)
Q Consensus 295 ~~~~al~Aa~~L~~~G--i~v~VI~~~--~l--~Pfd~-----------------------------~~l~~~~~~~~~v 339 (407)
....+...++.|++.| .+++++|+. .. .+++. +.+.+.+...+.|
T Consensus 19 t~~la~~~~~~~~~~g~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~aD~i 98 (208)
T 2hpv_A 19 SVRALETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQQQKVARFNELTDQFLSADKV 98 (208)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEETTCGGGCCCCCCHHHHHHHHHHHHTCCGGGSCHHHHHHHHHHHHHHHHHHHCSEE
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEeeCCcccCCCCcCCHHHHHhhcCcccccccccCCHHHHhhHHHHHHHHHHHHhCCEE
Confidence 3345566677887776 899999998 54 34432 2244557778888
Q ss_pred EEEecCccccchHHHHHHHHHh
Q 015415 340 LIVEECMRTGGIGASLTAAITE 361 (407)
Q Consensus 340 vvvEe~~~~GGlGs~I~~~l~e 361 (407)
|+.=.-+ .+++...+..++-.
T Consensus 99 v~~~P~y-~~~~pa~lK~~iD~ 119 (208)
T 2hpv_A 99 VIANPMW-NLNVPTRLKAWVDT 119 (208)
T ss_dssp EEEEECB-TTBCCHHHHHHHHH
T ss_pred EEEeccc-cCCCCHHHHHHHHH
Confidence 7777665 47777777766643
No 167
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=29.46 E-value=1.1e+02 Score=33.64 Aligned_cols=105 Identities=12% Similarity=0.047 Sum_probs=54.7
Q ss_pred EeccchhHHHHHHHHHHHhc----C-----C--eeEEEecchhHHH----HHHHHHHHhhhhhchhcCCccccc---EEE
Q 015415 137 LDTPIAENSFTGMGIGAAMT----G-----L--RPIVEGMNMGFLL----LAFNQISNNCGMLHYTSGGQFTIP---IVI 198 (407)
Q Consensus 137 i~~GIaE~~~vg~A~GlA~~----G-----~--rp~~~t~~~~f~~----ra~dqi~~~~a~~~~~~gg~~~lp---vvi 198 (407)
+|.+..++. +.+|.|+|++ + . ++++ +..+... .++|-+ |.++.. ++| +++
T Consensus 318 ~~~shlg~~-~p~A~G~A~A~~~~~~~~~~~~~~vv~--v~GDGa~a~qG~~~Eal-n~A~~~--------~lp~gg~I~ 385 (933)
T 2jgd_A 318 FNPSHLEIV-SPVVIGSVRARLDRLDEPSSNKVLPIT--IHGDAAVTGQGVVQETL-NMSKAR--------GYEVGGTVR 385 (933)
T ss_dssp CCCSSTTCH-HHHHHHHHHHHHTTSSSCCGGGEEEEE--EEEHHHHHHCTHHHHHH-HHTTST--------TTCCSCCEE
T ss_pred ccCcccccc-cCHHHHHHHHHHhhccccCCCCeEEEE--EECCcccccCCHHHHHH-HHhhcc--------CCCCCceEE
Confidence 445555553 6677777766 2 1 3333 3333332 566766 345544 788 666
Q ss_pred Ee-cCCC--CC-CCCcCccch-H-H-HHHccCCCcEEEeeCCHHHHHHHHHHHHh----cCCCEEEe
Q 015415 199 RG-PGGV--GR-QLGAEHSQR-L-E-SYFQSIPGIQMVACSTPYNAKGLMKAAIR----SENPVILF 254 (407)
Q Consensus 199 ~~-~~G~--~~-~~G~tHsq~-~-e-a~~~~iPgl~V~~P~d~~e~~~~~~~a~~----~~~Pv~ir 254 (407)
++ .++. ++ ..+...+.. + + +-.-.+|.+.| .-.|++++..+++.|.+ ..+|++|-
T Consensus 386 vv~nN~~~ist~~~~~~~~~~~~~~~a~a~g~p~~~V-dG~D~~av~~a~~~A~e~~r~~~~P~lIe 451 (933)
T 2jgd_A 386 IVINNQVGFTTSNPLDARSTPYCTDIGKMVQAPIFHV-NADDPEAVAFVTRLALDFRNTFKRDVFID 451 (933)
T ss_dssp EEEECC---------------CGGGGGGTTTCCEEEE-ETTCHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred EEEeCCccccCCCHHhcccchhHHHHHHHcCCCEEEE-CCCCHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 55 4442 22 222111111 1 1 22234666654 67788999999988874 47898874
No 168
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=29.23 E-value=84 Score=23.99 Aligned_cols=67 Identities=18% Similarity=0.046 Sum_probs=40.8
Q ss_pred CcEEEEEec----hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhc-CCcEEEEecCccccchHH
Q 015415 285 EHVTILTYS----RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKK-THRVLIVEECMRTGGIGA 353 (407)
Q Consensus 285 ~dv~Iia~G----~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~-~~~vvvvEe~~~~GGlGs 353 (407)
..++|++.| +....|..|.+.|++.|++...+|+..- |--.+.+.+.... +=..++++.. ..||+-.
T Consensus 17 ~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~-~~~~~~l~~~~g~~~vP~v~i~g~-~igg~d~ 88 (105)
T 2yan_A 17 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILED-EEVRQGLKAYSNWPTYPQLYVKGE-LVGGLDI 88 (105)
T ss_dssp SSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGC-HHHHHHHHHHHTCCSSCEEEETTE-EEECHHH
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCC-HHHHHHHHHHHCCCCCCeEEECCE-EEeChHH
Confidence 357787765 5667888888899888999999998651 2111223332221 2234555444 4688753
No 169
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=29.18 E-value=71 Score=23.41 Aligned_cols=67 Identities=18% Similarity=0.120 Sum_probs=39.8
Q ss_pred CcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCch----hhHHHHHh-cCCcEEEEecCccccchHH
Q 015415 285 EHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDL----YTIGNSIK-KTHRVLIVEECMRTGGIGA 353 (407)
Q Consensus 285 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~----~~l~~~~~-~~~~vvvvEe~~~~GGlGs 353 (407)
.+++|.+. +....|..+...|++.|++.+.+|+....+-+. +.+.+... .+-.++++++ ...+|+..
T Consensus 12 ~~v~ly~~-~~Cp~C~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~~g-~~i~G~~~ 83 (92)
T 3ic4_A 12 AEVLMYGL-STCPHCKRTLEFLKREGVDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVKGD-KHVLGYNE 83 (92)
T ss_dssp SSSEEEEC-TTCHHHHHHHHHHHHHTCCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEETT-EEEESCCH
T ss_pred ceEEEEEC-CCChHHHHHHHHHHHcCCCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEECC-EEEeCCCH
Confidence 34666643 456778888888888899999999876554322 22222221 1224565644 44567643
No 170
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=29.10 E-value=15 Score=30.91 Aligned_cols=36 Identities=8% Similarity=-0.044 Sum_probs=25.9
Q ss_pred cCCcEEEEEechhHHH-HHHHHHHHhhCCCCceEEEe
Q 015415 283 PGEHVTILTYSRMRYH-VMQAAKTLVNKGYDPEVIDI 318 (407)
Q Consensus 283 eG~dv~Iia~G~~~~~-al~Aa~~L~~~Gi~v~VI~~ 318 (407)
+..|++||++|..... --+..+.|++.||.+++.|-
T Consensus 66 p~pevliiGTG~~~~~l~p~l~~~l~~~GI~vE~M~T 102 (135)
T 2fvt_A 66 NAIDTLIVGTGADVWIAPRQLREALRGVNVVLDTMQT 102 (135)
T ss_dssp TSCSEEEEECTTSCCCCCHHHHHHHHTTTCEEEEECH
T ss_pred CCCCEEEEcCCCCCCcCCHHHHHHHHHcCCEEEEeCH
Confidence 4479999999964422 23455678889999888763
No 171
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=28.79 E-value=63 Score=30.90 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=36.6
Q ss_pred EEEEEechhH----HHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCc
Q 015415 287 VTILTYSRMR----YHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECM 346 (407)
Q Consensus 287 v~Iia~G~~~----~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~ 346 (407)
-++|.|+++. ..|...++.|.++|++++++++. ..+...+.+.+.+++.+++.-..+
T Consensus 253 ~i~i~y~S~~GnT~~lA~~ia~~l~~~g~~v~~~~~~---~~~~~~~~~~~~~~d~ii~g~p~y 313 (398)
T 1ycg_A 253 KAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLS---VSDRNDVIKEILDARAVLVGSPTI 313 (398)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGG---GSCHHHHHHHHHHCSEEEEECCCB
T ss_pred eEEEEEECCccHHHHHHHHHHHHHHhcCCeEEEEECC---CCCHHHHHHHHHHCCEEEEECCcc
Confidence 3455566544 45666667777789889888865 344555555666777777665544
No 172
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=28.45 E-value=54 Score=26.53 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=24.3
Q ss_pred CcEEEEEechhHHHHHHHHHHHhhCCCCceEEEec
Q 015415 285 EHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIR 319 (407)
Q Consensus 285 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~ 319 (407)
.+++|+++|.+-.. .++.|.+.|.++.+||..
T Consensus 8 ~~viIiG~G~~G~~---la~~L~~~g~~v~vid~~ 39 (140)
T 3fwz_A 8 NHALLVGYGRVGSL---LGEKLLASDIPLVVIETS 39 (140)
T ss_dssp SCEEEECCSHHHHH---HHHHHHHTTCCEEEEESC
T ss_pred CCEEEECcCHHHHH---HHHHHHHCCCCEEEEECC
Confidence 46899999886654 445677789999999853
No 173
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=28.17 E-value=14 Score=30.56 Aligned_cols=36 Identities=8% Similarity=-0.035 Sum_probs=26.1
Q ss_pred cCCcEEEEEechhHH-HHHHHHHHHhhCCCCceEEEe
Q 015415 283 PGEHVTILTYSRMRY-HVMQAAKTLVNKGYDPEVIDI 318 (407)
Q Consensus 283 eG~dv~Iia~G~~~~-~al~Aa~~L~~~Gi~v~VI~~ 318 (407)
+..|++||++|.... .--+..+.|++.||.+++.|-
T Consensus 67 p~pevliiGtG~~~~~l~p~~~~~l~~~GI~vE~m~T 103 (128)
T 2fi9_A 67 DQIEVLLIGTGVELLRLPEELRVLLWEKRISSDTMST 103 (128)
T ss_dssp GGCSEEEEECTTSCCCCCHHHHHHHHHTTCEEEEECH
T ss_pred CCCCEEEECCCCCCCCCCHHHHHHHHHcCCEEEEeCH
Confidence 447999999997542 223455678889999888763
No 174
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=27.29 E-value=85 Score=30.92 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=38.3
Q ss_pred CCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecc---------------cccCchhhHHHH-HhcCCcEEEEecC
Q 015415 284 GEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRS---------------LKPFDLYTIGNS-IKKTHRVLIVEEC 345 (407)
Q Consensus 284 G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~---------------l~Pfd~~~l~~~-~~~~~~vvvvEe~ 345 (407)
+..++|+++|..-.. .++.|.++|+++.|||... -.+-+.+.|.+. +.+.+.||+.=++
T Consensus 4 ~~~viIiG~Gr~G~~---va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~ 78 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQI---TGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDD 78 (413)
T ss_dssp CCSEEEECCSHHHHH---HHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSS
T ss_pred CCeEEEECCCHHHHH---HHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCC
Confidence 456999999886655 4567888899999999531 133455666554 5556655554433
No 175
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=26.64 E-value=2.2e+02 Score=22.55 Aligned_cols=92 Identities=10% Similarity=0.066 Sum_probs=52.0
Q ss_pred EEEEEechhHHHHHHHHHHHh----hCCCCceEEEeccc---ccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHH
Q 015415 287 VTILTYSRMRYHVMQAAKTLV----NKGYDPEVIDIRSL---KPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAI 359 (407)
Q Consensus 287 v~Iia~G~~~~~al~Aa~~L~----~~Gi~v~VI~~~~l---~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l 359 (407)
+.|.++++......=|++.|+ +.|+++.|---.+. ++|+.+.|. ..+.||+.-+-... + . +.+
T Consensus 6 vaVtaCptGiAhTymAAeaLekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I~----~AD~VIia~d~~v~-~----~-~RF 75 (106)
T 2m1z_A 6 IAVTACATGVAHTYMAAQALKKGAKKMGNLIKVETQGATGIENELTEKDVN----IGEVVIFAVDTKVR-N----K-ERF 75 (106)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHHHHHHTCEEEEEEEETTEESSCCCHHHHH----HCSEEEEEESSCCS-T----H-HHH
T ss_pred EEEEECCCcHHHHHHHHHHHHHHHHHCCCEEEEEEecCccccCCCCHHHHh----hCCEEEEecccccc-c----h-hcc
Confidence 445566654433333444443 34888877655543 678777664 46777777665431 1 1 111
Q ss_pred HhccccCCCCCeEEeecCCCCCCCHHHHHHHcCCCHHHHHHHHHHHhC
Q 015415 360 TENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ 407 (407)
Q Consensus 360 ~e~~~~~~~~~v~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~ll~ 407 (407)
.+.|+.++++.+. .-+++.+++++.++++
T Consensus 76 -------~gk~v~~~~v~~~------------i~~~~~~l~~a~~~~~ 104 (106)
T 2m1z_A 76 -------DGKVVLEVPVSAP------------IKDAEKVINAALALID 104 (106)
T ss_dssp -------TTSEEEEECTTHH------------HHCHHHHHHHHHHHHT
T ss_pred -------CCCcEEEEcHHHH------------HHCHHHHHHHHHHHHh
Confidence 2467888777531 2367788777777653
No 176
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}
Probab=26.64 E-value=80 Score=24.01 Aligned_cols=68 Identities=12% Similarity=0.111 Sum_probs=42.4
Q ss_pred CcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHh-----cCCcEEEEecCccccchHH
Q 015415 285 EHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIK-----KTHRVLIVEECMRTGGIGA 353 (407)
Q Consensus 285 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~-----~~~~vvvvEe~~~~GGlGs 353 (407)
.+++|.+. +....|..|...|++.|++.+.+++....+-+.+.+.+.++ .+=.++++++....||+..
T Consensus 22 ~~v~ly~~-~~Cp~C~~ak~~L~~~~i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i~~~~~igg~~~ 94 (103)
T 3nzn_A 22 GKVIMYGL-STCVWCKKTKKLLTDLGVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTIINDEKAIVGFKE 94 (103)
T ss_dssp SCEEEEEC-SSCHHHHHHHHHHHHHTBCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEETTTEEEESCCH
T ss_pred CeEEEEcC-CCCchHHHHHHHHHHcCCCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEECCCEEEEcCCH
Confidence 45666543 56678888999999899999999987654433233333222 1224566766344577643
No 177
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=26.49 E-value=1e+02 Score=26.78 Aligned_cols=49 Identities=12% Similarity=0.217 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhc-----CCcEEEEecCc
Q 015415 296 RYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKK-----THRVLIVEECM 346 (407)
Q Consensus 296 ~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~-----~~~vvvvEe~~ 346 (407)
-....++++.++++||.+.+|.+-+-.. +.+ +...+++ ..+++.+.++.
T Consensus 121 ~~~~~~~a~~lk~~gi~v~~Ig~G~~~~-~~~-l~~la~~~n~~~~s~~~~~~~~~ 174 (192)
T 2x5n_A 121 EKNLIRLAKRMKKNNVAIDIIHIGELQN-ESA-LQHFIDAANSSDSCHLVSIPPSP 174 (192)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEESCC----CH-HHHHHHHHCSTTCCEEEEECCCS
T ss_pred chhHHHHHHHHHHCCCEEEEEEeCCCCc-cHH-HHHHHHhccCCCceEEEEecCcc
Confidence 3567788899999999999999887543 333 5555444 23667777764
No 178
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=26.40 E-value=1.4e+02 Score=25.77 Aligned_cols=65 Identities=8% Similarity=-0.035 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHhhC--CCCceEEEeccc--ccCch-------------------------hhHHHHHhcCCcEEEEecC
Q 015415 295 MRYHVMQAAKTLVNK--GYDPEVIDIRSL--KPFDL-------------------------YTIGNSIKKTHRVLIVEEC 345 (407)
Q Consensus 295 ~~~~al~Aa~~L~~~--Gi~v~VI~~~~l--~Pfd~-------------------------~~l~~~~~~~~~vvvvEe~ 345 (407)
....+..+++.|++. |.+++++|+... .+++. +.+.+.+...+.||+.=.-
T Consensus 18 t~~l~~~~~~~~~~~~~g~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~ 97 (212)
T 3r6w_A 18 SRRLAEVFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQLVGELFDSDLLVISTPM 97 (212)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEESSSSCCCCCCHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHhCCEEEEEcCc
Confidence 334566677888776 899999999653 23321 2234556778887777666
Q ss_pred ccccchHHHHHHHHH
Q 015415 346 MRTGGIGASLTAAIT 360 (407)
Q Consensus 346 ~~~GGlGs~I~~~l~ 360 (407)
+ .+++...+..++-
T Consensus 98 y-~~~~pa~lK~~iD 111 (212)
T 3r6w_A 98 Y-NFSVPSGLKAWID 111 (212)
T ss_dssp B-TTBCCHHHHHHHH
T ss_pred c-cccCCHHHHHHHH
Confidence 5 4677776666653
No 179
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=26.03 E-value=1.2e+02 Score=29.21 Aligned_cols=64 Identities=11% Similarity=0.168 Sum_probs=41.3
Q ss_pred chhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHH
Q 015415 293 SRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAIT 360 (407)
Q Consensus 293 G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~ 360 (407)
|..-..|...++.|+++|++++++++... +...+.+.+.+++.|++.=..+ .|++...+..++.
T Consensus 268 GnT~~la~~i~~~l~~~g~~v~~~~l~~~---~~~~~~~~l~~~D~iiigsP~y-~~~~~~~~k~fld 331 (414)
T 2q9u_A 268 GTTHRMALALLDGARSTGCETVLLEMTSS---DITKVALHTYDSGAVAFASPTL-NNTMMPSVAAALN 331 (414)
T ss_dssp SHHHHHHHHHHHHHHHTTCEEEEEEGGGC---CHHHHHHHHHTCSEEEEECCCB-TTBCCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCeEEEEEcCcC---CHHHHHHHHHhCCEEEEEcCcc-CcCchHHHHHHHH
Confidence 34456666777778778999999987653 3444555666777777665555 3566555555554
No 180
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=25.98 E-value=1.7e+02 Score=26.98 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=23.1
Q ss_pred cccCchhhHHHHHhcCCcEEEEecCc-----cccchHHHHHHHHH
Q 015415 321 LKPFDLYTIGNSIKKTHRVLIVEECM-----RTGGIGASLTAAIT 360 (407)
Q Consensus 321 l~Pfd~~~l~~~~~~~~~vvvvEe~~-----~~GGlGs~I~~~l~ 360 (407)
+-+++.+.+.+.++..+. +++-... ...|++..+.+.+.
T Consensus 258 ~g~~~~~~~~~~~~~ad~-~v~ps~~~~~~~~~e~~~~~~~Ea~a 301 (394)
T 3okp_A 258 LGRLEYQDMINTLAAADI-FAMPARTRGGGLDVEGLGIVYLEAQA 301 (394)
T ss_dssp EESCCHHHHHHHHHHCSE-EEECCCCBGGGTBCCSSCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhCCE-EEecCccccccccccccCcHHHHHHH
Confidence 344566778888887764 4442222 11466667777775
No 181
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=25.85 E-value=1.2e+02 Score=26.29 Aligned_cols=63 Identities=14% Similarity=0.176 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhhCCCCceEEEecccc--cC----------------chhhHHHHHhcCCcEEEEecCccccchHHHHHH
Q 015415 296 RYHVMQAAKTLVNKGYDPEVIDIRSLK--PF----------------DLYTIGNSIKKTHRVLIVEECMRTGGIGASLTA 357 (407)
Q Consensus 296 ~~~al~Aa~~L~~~Gi~v~VI~~~~l~--Pf----------------d~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~ 357 (407)
...+..+++.| +.|.+++++|+.... |. |.+.+.+.++.++.||+.=.-+ .+++-+.+..
T Consensus 17 ~~l~~~~~~~~-~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~y-~~~~pa~LK~ 94 (196)
T 3lcm_A 17 AEILKQVQTNL-SKEHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTWADHLIFIFPIW-WSGMPAILKG 94 (196)
T ss_dssp HHHHHHHHHHS-CTTSEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHHCSEEEEEEECB-TTBCCHHHHH
T ss_pred HHHHHHHHHHh-cCCCeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHhCCEEEEECchh-hccccHHHHH
Confidence 34555666777 779999999998664 31 2345667788888887776655 4777776766
Q ss_pred HHH
Q 015415 358 AIT 360 (407)
Q Consensus 358 ~l~ 360 (407)
++-
T Consensus 95 ~iD 97 (196)
T 3lcm_A 95 FID 97 (196)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 182
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=25.31 E-value=1.3e+02 Score=28.51 Aligned_cols=69 Identities=13% Similarity=0.186 Sum_probs=40.0
Q ss_pred EEEEechhH----HHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCccccchHHHHHHHHH
Q 015415 288 TILTYSRMR----YHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAIT 360 (407)
Q Consensus 288 ~Iia~G~~~----~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~ 360 (407)
++|.|+++. ..|...++.|+++|+.++++++. ..+.+.+.+.+.+++.|++.-..+ .+++-..+..++.
T Consensus 255 v~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~~---~~~~~~~~~~~~~~d~ii~gsp~~-~~~~~~~~~~~l~ 327 (402)
T 1e5d_A 255 VVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCK---ACHHSQIMSEISDAGAVIVGSPTH-NNGILPYVAGTLQ 327 (402)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETT---TSCHHHHHHHHHTCSEEEEECCCB-TTBCCHHHHHHHH
T ss_pred EEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEECC---CCCHHHHHHHHHHCCEEEEECCcc-CCCchHHHHHHHH
Confidence 444555543 34555666777788888888865 345555555566677666655444 3444444444443
No 183
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=24.97 E-value=1.1e+02 Score=29.27 Aligned_cols=59 Identities=22% Similarity=0.208 Sum_probs=39.3
Q ss_pred ecCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEeccccc-------------CchhhHHHHHhcCCcEEEEec
Q 015415 282 RPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKP-------------FDLYTIGNSIKKTHRVLIVEE 344 (407)
Q Consensus 282 ~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~P-------------fd~~~l~~~~~~~~~vvvvEe 344 (407)
..++.+.|++.|.......+++ ++.|+++-++|..--.| .|.+.+.+.+++.+ +++.|-
T Consensus 10 ~~~~~IlIlG~G~lg~~la~aa---~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~d-vi~~~~ 81 (377)
T 3orq_A 10 KFGATIGIIGGGQLGKMMAQSA---QKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCD-VITYEF 81 (377)
T ss_dssp CTTCEEEEECCSHHHHHHHHHH---HHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCS-EEEESS
T ss_pred CCCCEEEEECCCHHHHHHHHHH---HHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCC-cceecc
Confidence 4567899999887765555554 44599998888643222 35567777777765 566654
No 184
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=24.81 E-value=60 Score=27.20 Aligned_cols=39 Identities=13% Similarity=-0.003 Sum_probs=30.4
Q ss_pred cCCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEeccc
Q 015415 283 PGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSL 321 (407)
Q Consensus 283 eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l 321 (407)
...++++|+-|..+...+..++.|.+.|.++.++..|+-
T Consensus 22 ~~~~~llIaGG~GItPl~sm~~~l~~~~~~v~l~g~r~~ 60 (158)
T 3lrx_A 22 KFGKILAIGAYTGIVEVYPIAKAWQEIGNDVTTLHVTFE 60 (158)
T ss_dssp CCSEEEEEEETTHHHHHHHHHHHHHHHTCEEEEEEECBG
T ss_pred CCCeEEEEEccCcHHHHHHHHHHHHhcCCcEEEEEeCCH
Confidence 456899999999988888888888777777877744543
No 185
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=24.78 E-value=2.7e+02 Score=23.82 Aligned_cols=60 Identities=15% Similarity=0.098 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcC-CcEEEEecCccccchHHHHH
Q 015415 294 RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKT-HRVLIVEECMRTGGIGASLT 356 (407)
Q Consensus 294 ~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~-~~vvvvEe~~~~GGlGs~I~ 356 (407)
+-...+.+|++.|++-|+..++ .+-++...+++. .++++.. .+|+++=-+. .+.|..-++
T Consensus 10 SD~~v~~~a~~~l~~~gi~~dv-~V~saHR~p~~~-~~~~~~a~~~ViIa~AG~-aa~Lpgvva 70 (157)
T 2ywx_A 10 SDLKIAEKAVNILKEFGVEFEV-RVASAHRTPELV-EEIVKNSKADVFIAIAGL-AAHLPGVVA 70 (157)
T ss_dssp GGHHHHHHHHHHHHHTTCCEEE-EECCTTTCHHHH-HHHHHHCCCSEEEEEEES-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCeEE-EEEcccCCHHHH-HHHHHhcCCCEEEEEcCc-hhhhHHHHH
Confidence 5678899999999999997544 444555566543 4555533 2565555444 356655554
No 186
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=24.61 E-value=4.8e+02 Score=25.87 Aligned_cols=71 Identities=18% Similarity=0.070 Sum_probs=45.7
Q ss_pred CcEEEEEec-hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHh---c--CCcEEEEecCccccchHHHHHHH
Q 015415 285 EHVTILTYS-RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIK---K--THRVLIVEECMRTGGIGASLTAA 358 (407)
Q Consensus 285 ~dv~Iia~G-~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~---~--~~~vvvvEe~~~~GGlGs~I~~~ 358 (407)
..+.||.-| +-...+.+|++.|++-|+..++ .+-++...+... .+.++ . .+.|+++=-+. .+.|..-|+..
T Consensus 266 ~~V~Ii~gs~SD~~~~~~a~~~l~~~gi~~~v-~V~saHR~p~~~-~~~~~~~~~~g~~~viIa~AG~-~a~Lpgvva~~ 342 (425)
T 2h31_A 266 CRVVVLMGSTSDLGHCEKIKKACGNFGIPCEL-RVTSAHKGPDET-LRIKAEYEGDGIPTVFVAVAGR-SNGLGPVMSGN 342 (425)
T ss_dssp CEEEEEESCGGGHHHHHHHHHHHHHTTCCEEE-EECCTTTCHHHH-HHHHHHHHTTCCCEEEEEECCS-SCCHHHHHHHH
T ss_pred CeEEEEecCcccHHHHHHHHHHHHHcCCceEE-eeeeccCCHHHH-HHHHHHHHHCCCCeEEEEEcCc-ccchHhHHhcc
Confidence 356666544 5778899999999999997653 555566666543 23333 2 22466666665 47787777655
No 187
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=23.58 E-value=3.4e+02 Score=23.38 Aligned_cols=70 Identities=14% Similarity=0.061 Sum_probs=43.5
Q ss_pred cEEEEEec-hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcC----CcEEEEecCccccchHHHHHHH
Q 015415 286 HVTILTYS-RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKT----HRVLIVEECMRTGGIGASLTAA 358 (407)
Q Consensus 286 dv~Iia~G-~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~----~~vvvvEe~~~~GGlGs~I~~~ 358 (407)
++.||.-| +-...+.+|++.|++-|+..++ .+-++...+++. .+.++.. -+|+++=-+. .+.|..-|+..
T Consensus 7 ~V~IimgS~SD~~v~~~a~~~l~~~gi~~ev-~V~SaHRtp~~l-~~~~~~~~~~g~~ViIa~AG~-aa~LpgvvA~~ 81 (166)
T 3oow_A 7 QVGVIMGSKSDWSTMKECCDILDNLGIGYEC-EVVSAHRTPDKM-FDYAETAKERGLKVIIAGAGG-AAHLPGMVAAK 81 (166)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHHTTCEEEE-EECCTTTCHHHH-HHHHHHTTTTTCCEEEEEECS-SCCHHHHHHHT
T ss_pred eEEEEECcHHhHHHHHHHHHHHHHcCCCEEE-EEEcCcCCHHHH-HHHHHHHHhCCCcEEEEECCc-chhhHHHHHhc
Confidence 46666544 4578899999999999997654 555565566543 3444322 2456555554 36777666643
No 188
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=23.08 E-value=1.2e+02 Score=28.27 Aligned_cols=65 Identities=14% Similarity=0.040 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhhCCCCceEEEeccccc----------------------------------CchhhHHHHHhcCCcEEE
Q 015415 296 RYHVMQAAKTLVNKGYDPEVIDIRSLKP----------------------------------FDLYTIGNSIKKTHRVLI 341 (407)
Q Consensus 296 ~~~al~Aa~~L~~~Gi~v~VI~~~~l~P----------------------------------fd~~~l~~~~~~~~~vvv 341 (407)
...+..+++.|++.|.+|+++|+.-.++ -|.+...+.+...+.||+
T Consensus 39 ~aL~~~~~~~l~~~G~eV~v~DLy~~~f~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~l~~aD~iv~ 118 (280)
T 4gi5_A 39 GALKNFAIRHLQQAGHEVQVSDLYAMRWKAGYDADDSGAPPVGEFWRPTLDSKQAFAQGTQSADIVAEQEKLLWADTVIF 118 (280)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEETTTTTCCCSCCGGGSSSSCSSSSCCHHHHHHHHHHHTCSCHHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHHHCCCeEEEEEccccCCCCcCCHHHhcccccccccChhhHHHHHhhcCCCcHHHHHHHHHHHhCCEEEE
Confidence 3456667788999999999999965432 122233455777888887
Q ss_pred EecCccccchHHHHHHHHHh
Q 015415 342 VEECMRTGGIGASLTAAITE 361 (407)
Q Consensus 342 vEe~~~~GGlGs~I~~~l~e 361 (407)
+=.-+ .+++-+.+..++-+
T Consensus 119 ~~P~~-w~~~Pa~lK~~iDr 137 (280)
T 4gi5_A 119 QFPLW-WFSMPAIMKGWIDR 137 (280)
T ss_dssp EEECB-TTBCCHHHHHHHHH
T ss_pred Eeccc-cccCcHHHHHHHHH
Confidence 77766 36666666666543
No 189
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=22.89 E-value=2e+02 Score=23.75 Aligned_cols=60 Identities=5% Similarity=0.118 Sum_probs=39.7
Q ss_pred CcEEEEEec-hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHH-HHhcCCcEEEEecC
Q 015415 285 EHVTILTYS-RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGN-SIKKTHRVLIVEEC 345 (407)
Q Consensus 285 ~dv~Iia~G-~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~-~~~~~~~vvvvEe~ 345 (407)
.++.|+..+ .....|.+..+.|++.|+.+++.+.++=.++.. .|++ ...+..-++||-+-
T Consensus 9 ~Qv~IlpVs~~~~~YA~~V~~~L~~~GiRvevD~~r~~e~Lg~-kIR~a~~~kvPy~lVVG~k 70 (130)
T 1v95_A 9 VDCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQ-ALEDVSRGGSPFAIVITQQ 70 (130)
T ss_dssp CTEEEEESSSGGGHHHHHHHHHHHTTTCCEEEEECTTSSCHHH-HHHHHHHHTCSEEEEECHH
T ss_pred CeEEEEEeCcchHHHHHHHHHHHHHCCCEEEEecCCCCCcHHH-HHHHHHHcCCCEEEEEech
Confidence 356777666 466889999999999999999866433223332 2444 34456677777654
No 190
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=22.72 E-value=1.3e+02 Score=31.30 Aligned_cols=92 Identities=14% Similarity=0.124 Sum_probs=49.5
Q ss_pred CCcEEEEEechhHHHHHHHHHHH----hhCCCCceEEEecccccCchhhHHHHHh-cCCcEEEEecCccccch---HHHH
Q 015415 284 GEHVTILTYSRMRYHVMQAAKTL----VNKGYDPEVIDIRSLKPFDLYTIGNSIK-KTHRVLIVEECMRTGGI---GASL 355 (407)
Q Consensus 284 G~dv~Iia~G~~~~~al~Aa~~L----~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~-~~~~vvvvEe~~~~GGl---Gs~I 355 (407)
+..+ +|.||++...+.+.|+.| ++.|+++.++++..+ |.+.+.+... +.+.+|++=..+-.|.+ ...+
T Consensus 18 ~~~i-~I~YgS~tGnte~~A~~la~~l~~~g~~~~v~~~~~~---~~~~l~~~~~~~~~~vi~~~sT~G~G~~pd~~~~F 93 (618)
T 3qe2_A 18 GRNI-IVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEY---DLADLSSLPEIDNALVVFCMATYGEGDPTDNAQDF 93 (618)
T ss_dssp TCSE-EEEEECSSSHHHHHHHHHHHHGGGGTCCEEEECGGGS---CGGGGGGGGGSTTCEEEEEEECBGGGBCCGGGHHH
T ss_pred CCeE-EEEEECChhHHHHHHHHHHHHHHhCCCceEEechHHc---CHHHhhhcccccCcEEEEEcCccCCCCCCHHHHHH
Confidence 4454 456888777666666655 445999888887654 3333332221 34566666444433433 3345
Q ss_pred HHHHHhccccCCCCCeEEeecCCC
Q 015415 356 TAAITENFHDYLDAPIVCLSSQDV 379 (407)
Q Consensus 356 ~~~l~e~~~~~~~~~v~~ig~~d~ 379 (407)
...|.+........++..+|+-|.
T Consensus 94 ~~~L~~~~~~l~~~~~avfGlGd~ 117 (618)
T 3qe2_A 94 YDWLQETDVDLSGVKFAVFGLGNK 117 (618)
T ss_dssp HHHHHHCCCCCTTCEEEEEEEECT
T ss_pred HHHHhhccccccCCEEEEEeCCCC
Confidence 556654211112345667776664
No 191
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=22.68 E-value=45 Score=29.12 Aligned_cols=64 Identities=16% Similarity=0.232 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHhhCCCCce-EEEecccccCch------------hhHHHHHhcCCcEEEEecCccccchHHHHHHHH
Q 015415 295 MRYHVMQAAKTLVNKGYDPE-VIDIRSLKPFDL------------YTIGNSIKKTHRVLIVEECMRTGGIGASLTAAI 359 (407)
Q Consensus 295 ~~~~al~Aa~~L~~~Gi~v~-VI~~~~l~Pfd~------------~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l 359 (407)
......+++..+.++|.+++ +||+.-+-.++. +.+.+.++..+.||++=.-+ .+++...+..++
T Consensus 19 ~t~~l~~~~~~~~~~g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~l~~~i~~AD~iv~~sP~y-~~~~~~~lK~~i 95 (193)
T 3svl_A 19 FNGMVARTLPKIAPASMEVNALPSIADIPLYDADVQQEEGFPATVEALAEQIRQADGVVIVTPEY-NYSVPGGLKNAI 95 (193)
T ss_dssp HHHHHHHHGGGTSCTTEEEEECCCSTTCCCCCHHHHHHTCSCHHHHHHHHHHHHSSEEEEEECCB-TTBCCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCEEEEEEeHHHCCCCCcccccccCCCHHHHHHHHHHHHCCEEEEEeccc-CCCCCHHHHHHH
Confidence 33344444444445688888 888887522222 23556777788877776665 356655554443
No 192
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=22.25 E-value=1e+02 Score=26.50 Aligned_cols=61 Identities=10% Similarity=0.061 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhc--CCcEEEEecCccccchHHHHHHHHH
Q 015415 298 HVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKK--THRVLIVEECMRTGGIGASLTAAIT 360 (407)
Q Consensus 298 ~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~--~~~vvvvEe~~~~GGlGs~I~~~l~ 360 (407)
...++++.|++.|+.+-.|-+-. ..|.+.|.+.... .++++.+++-...-.+-..|...++
T Consensus 134 ~~~~~a~~l~~~gi~i~~igvG~--~~~~~~L~~iA~~~~~~~~~~~~~~~~L~~~~~~i~~~iC 196 (202)
T 1ijb_A 134 NFVRYVQGLKKKKVIVIPVGIGP--HANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLC 196 (202)
T ss_dssp THHHHHHHHHHTTEEEEEEEEST--TSCHHHHHHHHHHCTTCCCEEESSGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEecCC--cCCHHHHHHHhCCCCcccEEEeCCHHHHHHHHHHHHHHhh
Confidence 46677788888887665555442 4687888776653 3577777754332233334444443
No 193
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A
Probab=22.24 E-value=23 Score=30.28 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=25.9
Q ss_pred CCcEEEEEechhHH-HHHHHHHHHhhCCCCceEEE
Q 015415 284 GEHVTILTYSRMRY-HVMQAAKTLVNKGYDPEVID 317 (407)
Q Consensus 284 G~dv~Iia~G~~~~-~al~Aa~~L~~~Gi~v~VI~ 317 (407)
+.|++||++|.... .--+..+.|++.||.+++.|
T Consensus 88 ~pEvliiGTG~~~~~l~p~~~~~L~~~GIgvE~M~ 122 (150)
T 3cpk_A 88 APEVLLVGTGRRQHLLGPEQVRPLLAMGVGVEAMD 122 (150)
T ss_dssp CCSEEEEECTTSCCCCCHHHHHHHHTTTCEEEEEC
T ss_pred CCCEEEEcCCCCCCCCCHHHHHHHHHcCCEEEEeC
Confidence 57999999997543 23455677889999998876
No 194
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=22.24 E-value=1e+02 Score=25.78 Aligned_cols=84 Identities=8% Similarity=-0.005 Sum_probs=49.2
Q ss_pred EEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchhhH-------------------------HHHHhcCCcEEEEe
Q 015415 289 ILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTI-------------------------GNSIKKTHRVLIVE 343 (407)
Q Consensus 289 Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l-------------------------~~~~~~~~~vvvvE 343 (407)
+|.|.+....-.++|+.+.+ ++.+.++.+...+|++.+.+ ...+.+++.|++.=
T Consensus 8 lIvY~S~tG~T~~vA~~Ia~-~l~~~~~~i~~~~~y~~~~l~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~yd~iilG~ 86 (162)
T 3klb_A 8 LVAYFSCSGVTKAVAEKLAA-ITGADLYEIKPEVPYTEADLDWNDKKSRSSVEMRDALSRPAISGTLFHPEKYEVLFVGF 86 (162)
T ss_dssp EEEECCSSSHHHHHHHHHHH-HHTCEEEECCBSSCCCTGGGCTTCTTSHHHHHHTCTTCCCCBSCCCSCGGGCSEEEEEE
T ss_pred EEEEECCCchHHHHHHHHHH-HhCCCeEEEEeCCcCCccccchhhHHHHHHHHHhccccCccccccccChhhCCEEEEEc
Confidence 44555555555555555533 34577888887777654110 01244566666666
Q ss_pred cCccccchHHHHHHHHHhccccCCCCCeEEeec
Q 015415 344 ECMRTGGIGASLTAAITENFHDYLDAPIVCLSS 376 (407)
Q Consensus 344 e~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~ 376 (407)
..+ .|++-..+..++.+..+ ...++..++.
T Consensus 87 P~~-~g~~~~~~~~fl~~~~l--~gk~v~~f~t 116 (162)
T 3klb_A 87 PVW-WYIAPTIINTFLESYDF--AGKIVVPFAT 116 (162)
T ss_dssp ECB-TTBCCHHHHHHHHTSCC--TTCEEEEEEE
T ss_pred ccc-cCCCCHHHHHHHHhcCC--CCCEEEEEEE
Confidence 665 47888888888876432 2345555654
No 195
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=21.92 E-value=3.9e+02 Score=23.15 Aligned_cols=71 Identities=18% Similarity=0.035 Sum_probs=44.3
Q ss_pred CcEEEEEec-hhHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhc----CCcEEEEecCccccchHHHHHHH
Q 015415 285 EHVTILTYS-RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKK----THRVLIVEECMRTGGIGASLTAA 358 (407)
Q Consensus 285 ~dv~Iia~G-~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~----~~~vvvvEe~~~~GGlGs~I~~~ 358 (407)
..+.||.=| +-...+.+|++.|++-|+..++ .+-+....+++. .++++. .-+|+++=-+. .+.|..-|+..
T Consensus 13 P~V~IimGS~SD~~v~~~a~~~l~~~gi~~ev-~V~saHR~p~~l-~~~~~~a~~~g~~ViIa~AG~-aahLpgvvA~~ 88 (173)
T 4grd_A 13 PLVGVLMGSSSDWDVMKHAVAILQEFGVPYEA-KVVSAHRMPDEM-FDYAEKARERGLRAIIAGAGG-AAHLPGMLAAK 88 (173)
T ss_dssp CSEEEEESSGGGHHHHHHHHHHHHHTTCCEEE-EECCTTTSHHHH-HHHHHHHTTTTCSEEEEEEES-SCCHHHHHHHH
T ss_pred CeEEEEeCcHhHHHHHHHHHHHHHHcCCCEEE-EEEccccCHHHH-HHHHHHHHhcCCeEEEEeccc-cccchhhheec
Confidence 456666544 5778899999999999998754 555666666543 233332 12456555554 36677666654
No 196
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=21.90 E-value=1.1e+02 Score=25.63 Aligned_cols=58 Identities=9% Similarity=0.078 Sum_probs=32.6
Q ss_pred EEEechhH----HHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCccccchHH
Q 015415 289 ILTYSRMR----YHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGA 353 (407)
Q Consensus 289 Iia~G~~~----~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~GGlGs 353 (407)
+|.|+++. ..|...++.|.++|+.+.++++....+ +. +.+++.|+++=..+-.|.+-.
T Consensus 13 ~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~---~~----l~~~d~ii~g~pt~g~G~~p~ 74 (167)
T 1ykg_A 13 TIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKF---KQ----IASEKLLIVVTSTQGEGEPPE 74 (167)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHHHTCCCEEEEGGGCCG---GG----GGGCSEEEEEEECBGGGBCCG
T ss_pred EEEEECCchHHHHHHHHHHHHHHHCCCceEEeehhhCCH---HH----hccCCeEEEEEcccCCCcCCh
Confidence 34455544 455555566666799999998765432 21 345666666655442343433
No 197
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=21.80 E-value=65 Score=28.43 Aligned_cols=55 Identities=13% Similarity=0.219 Sum_probs=32.8
Q ss_pred CCcEEEEEechhHHHHHHHHHHHhhCCCCceEEEecc--------------cccCchhhHHHH-HhcCCcEEEE
Q 015415 284 GEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRS--------------LKPFDLYTIGNS-IKKTHRVLIV 342 (407)
Q Consensus 284 G~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~--------------l~Pfd~~~l~~~-~~~~~~vvvv 342 (407)
...++|+++|... ...++.|.++|. +.+|+... -.+.|.+.|.+. +.+.+.|++.
T Consensus 9 ~~~viI~G~G~~G---~~la~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~ 78 (234)
T 2aef_A 9 SRHVVICGWSEST---LECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVD 78 (234)
T ss_dssp -CEEEEESCCHHH---HHHHHHSTTSEE-EEEESCGGGHHHHHHTTCEEEESCTTCHHHHHHTTCTTCSEEEEC
T ss_pred CCEEEEECCChHH---HHHHHHHHhCCe-EEEEECCHHHHHHHhcCCeEEEcCCCCHHHHHhcCcchhcEEEEc
Confidence 4568888888544 445667877888 88886431 123344555544 5566665554
No 198
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=21.37 E-value=1.4e+02 Score=27.41 Aligned_cols=66 Identities=18% Similarity=0.167 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHhhCCCCceEEEecccc--cC---------------------------------chhhHHHHHhcCCcE
Q 015415 295 MRYHVMQAAKTLVNKGYDPEVIDIRSLK--PF---------------------------------DLYTIGNSIKKTHRV 339 (407)
Q Consensus 295 ~~~~al~Aa~~L~~~Gi~v~VI~~~~l~--Pf---------------------------------d~~~l~~~~~~~~~v 339 (407)
....+..+++.|++.|.+++++|+.... |. |.+.+.+.+..++.|
T Consensus 18 t~~la~~~~~~l~~~g~eV~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~l~~AD~I 97 (273)
T 1d4a_A 18 NYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLV 97 (273)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEETTTTTCCCCCCGGGBCSCCSSTTSCCHHHHHHHHHHHTCBCHHHHHHHHHHHHCSEE
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEccccCCCCcCCHHHHHhhccCcccccchhhhhhhhhcccCcHHHHHHHHHHHhCCEE
Confidence 3455666677888889999999998654 11 122233447778887
Q ss_pred EEEecCccccchHHHHHHHHHh
Q 015415 340 LIVEECMRTGGIGASLTAAITE 361 (407)
Q Consensus 340 vvvEe~~~~GGlGs~I~~~l~e 361 (407)
|+.=.-+ .+++-+.+..++-.
T Consensus 98 V~~~P~y-~~s~Pa~LK~~iDr 118 (273)
T 1d4a_A 98 IFQFPLQ-WFGVPAILKGWFER 118 (273)
T ss_dssp EEEEECB-TTBCCHHHHHHHHH
T ss_pred EEECchh-hccCCHHHHHHHHH
Confidence 7776665 47777777666543
No 199
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=21.17 E-value=1.2e+02 Score=24.53 Aligned_cols=62 Identities=15% Similarity=0.130 Sum_probs=40.2
Q ss_pred CcEEEEEech----hHHHHHHHHHHHhhCCC-CceEEEecccccCchhhHHHHHhc-----CCcEEEEecCccccchH
Q 015415 285 EHVTILTYSR----MRYHVMQAAKTLVNKGY-DPEVIDIRSLKPFDLYTIGNSIKK-----THRVLIVEECMRTGGIG 352 (407)
Q Consensus 285 ~dv~Iia~G~----~~~~al~Aa~~L~~~Gi-~v~VI~~~~l~Pfd~~~l~~~~~~-----~~~vvvvEe~~~~GGlG 352 (407)
.+|+|++-|+ ....+.+|.+.|.+.|+ +...+|+.. ...+++.+++ |=.-|.|.... .||.-
T Consensus 20 ~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~-----~~~~r~~l~~~sg~~TvPqIFI~g~~-IGG~D 91 (118)
T 2wul_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLD-----DPELRQGIKDYSNWPTIPQVYLNGEF-VGGCD 91 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTS-----CHHHHHHHHHHHTCCSSCEEEETTEE-EECHH
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccC-----CHHHHHHHHHhccCCCCCeEeECCEE-ECCHH
Confidence 5688998884 67889999999999998 578888642 2334444442 21234555544 37754
No 200
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=21.07 E-value=2.9e+02 Score=24.88 Aligned_cols=74 Identities=9% Similarity=-0.029 Sum_probs=43.4
Q ss_pred CcEEEEEechhHHHHHHHH----HHHhhCCCCceEEEe-c------------ccccCchhhHHHHHhc-CCcEEEEecCc
Q 015415 285 EHVTILTYSRMRYHVMQAA----KTLVNKGYDPEVIDI-R------------SLKPFDLYTIGNSIKK-THRVLIVEECM 346 (407)
Q Consensus 285 ~dv~Iia~G~~~~~al~Aa----~~L~~~Gi~v~VI~~-~------------~l~Pfd~~~l~~~~~~-~~~vvvvEe~~ 346 (407)
+-++|++.|+....+.+.. +.|++..-+..|--. . .-.|...+.|.+...+ .++|+++-=+.
T Consensus 10 ~aillv~hGS~~~~~~~~~~~~~~~l~~~~~~~~V~~af~~~~i~~~l~~~~~~~P~i~~al~~l~~~G~~~ivV~Pl~l 89 (269)
T 2xvy_A 10 TGILLVAFGTSVEEARPALDKMGDRVRAAHPDIPVRWAYTAKMIRAKLRAEGIAAPSPAEALAGMAEEGFTHVAVQSLHT 89 (269)
T ss_dssp EEEEEEECCCCCTTTTHHHHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCCEEEEEECCS
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHHHHHHCCCCeEEeehhhHHHHHHHHHcCCCCCCHHHHHHHHHHCCCCEEEEEecee
Confidence 3578888887665444333 344443223333222 2 2358888888776553 57888888876
Q ss_pred cccchHHHHHHH
Q 015415 347 RTGGIGASLTAA 358 (407)
Q Consensus 347 ~~GGlGs~I~~~ 358 (407)
..|..-..|.+.
T Consensus 90 ~~G~~~~di~~~ 101 (269)
T 2xvy_A 90 IPGEEFHGLLET 101 (269)
T ss_dssp SSSHHHHHHHHH
T ss_pred eccHhHHHHHHH
Confidence 666555555555
No 201
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=20.95 E-value=1.3e+02 Score=25.54 Aligned_cols=85 Identities=13% Similarity=0.084 Sum_probs=49.8
Q ss_pred EEEechhHHHHHHHHHHHhhCCCCceEEEecccccCchh----------hH---------------HHHHhcCCcEEEEe
Q 015415 289 ILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLY----------TI---------------GNSIKKTHRVLIVE 343 (407)
Q Consensus 289 Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~----------~l---------------~~~~~~~~~vvvvE 343 (407)
+|.|.+....-..+|+.+.+ .+.+.++++...+|++.. .. ...+.+++.|++.=
T Consensus 17 lIvY~S~tGnT~~vA~~Ia~-~l~~d~~~I~~~~~y~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~yD~iilg~ 95 (171)
T 4ici_A 17 LVAYFSATGTTARAAEKLGA-AVGGDLYPIAPAQPYTSADLDWNNKRSRSSVEMNDPKMRPAIKSKKENIGTYDVVFIGY 95 (171)
T ss_dssp EEEECCSSSHHHHHHHHHHH-HHTCEEEECCBSSCCCTGGGCTTCTTSHHHHHHHCTTCCCCBSCCCTTGGGCSEEEEEE
T ss_pred EEEEECCCChHHHHHHHHHH-HhCCCeEEEeeCCCCCccccchhhHhHHHHHHHhcccCCcccccccccHhHCCEEEEec
Confidence 34455555555555555533 235678888888776531 11 12355677777766
Q ss_pred cCccccchHHHHHHHHHhccccCCCCCeEEeecC
Q 015415 344 ECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQ 377 (407)
Q Consensus 344 e~~~~GGlGs~I~~~l~e~~~~~~~~~v~~ig~~ 377 (407)
.-+ .|++-..+..++....+ ...++..++..
T Consensus 96 Pvy-~g~~~~~~~~fl~~~~l--~gk~v~~f~t~ 126 (171)
T 4ici_A 96 PIW-WDLAPRIINTFIEGHSL--KGKTVVPFATS 126 (171)
T ss_dssp ECB-TTBCCHHHHHHHHHSCC--TTSEEEEEEEC
T ss_pred ccc-cCCchHHHHHHHHHcCC--CcCEEEEEEec
Confidence 665 47888888888876532 23455555553
No 202
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=20.91 E-value=1.2e+02 Score=26.33 Aligned_cols=55 Identities=9% Similarity=0.239 Sum_probs=38.3
Q ss_pred HHhhC--CCCceEEEeccccc--C-------c---hhhHHHHHhcCCcEEEEecCccccchHHHHHHHHH
Q 015415 305 TLVNK--GYDPEVIDIRSLKP--F-------D---LYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAIT 360 (407)
Q Consensus 305 ~L~~~--Gi~v~VI~~~~l~P--f-------d---~~~l~~~~~~~~~vvvvEe~~~~GGlGs~I~~~l~ 360 (407)
.|++. |.++++||+.-+.+ + + .+.+.+.+...+.+|++=.-+ .+++...+..++-
T Consensus 41 ~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~ivi~sP~Y-~~~~~~~lK~~iD 109 (191)
T 3k1y_A 41 AVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITSALSASDGLVVATPVF-KASYTGLFKMFFD 109 (191)
T ss_dssp HHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHHHHHHHCSEEEEEEECB-TTBSCHHHHHHHH
T ss_pred HHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHHHHHHHCCEEEEEcCcc-CCcCcHHHHHHHH
Confidence 66666 78999999987642 1 1 134666777888888877766 4777777776664
No 203
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=20.75 E-value=3.3e+02 Score=26.29 Aligned_cols=63 Identities=8% Similarity=0.018 Sum_probs=40.1
Q ss_pred CCcEEEEEec-hhHHHHHHHHHHHhhCCCCceEEEecccccCchh-----hHHHHHhcC-CcEEEEecCcc
Q 015415 284 GEHVTILTYS-RMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLY-----TIGNSIKKT-HRVLIVEECMR 347 (407)
Q Consensus 284 G~dv~Iia~G-~~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~-----~l~~~~~~~-~~vvvvEe~~~ 347 (407)
|+. +|+++| +...+.+.|++.+.+.|-++-+..+.+-.|-+.+ .|..+-+.+ +..|-.=+|..
T Consensus 135 gKP-viLstGmstl~Ei~~Ave~i~~~g~~viLlhC~s~YPt~~~~~nL~aI~~Lk~~fp~lpVG~SdHt~ 204 (350)
T 3g8r_A 135 DKP-VVASTAGARREDIDKVVSFMLHRGKDLTIMHCVAEYPTPDDHLHLARIKTLRQQYAGVRIGYSTHED 204 (350)
T ss_dssp CSC-EEEECTTCCHHHHHHHHHHHHTTTCCEEEEECCCCSSCCGGGCCTTHHHHHHHHCTTSEEEEEECCC
T ss_pred CCc-EEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCcccCCHHHHHHHHHHCCCCCEEcCCCCC
Confidence 443 577888 4678899999999888877666666665664443 343333346 44455555653
No 204
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=20.46 E-value=64 Score=30.10 Aligned_cols=31 Identities=16% Similarity=0.078 Sum_probs=24.1
Q ss_pred CcEEEEEechhHHHHHHHHHHHhhCCCCceEEEe
Q 015415 285 EHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDI 318 (407)
Q Consensus 285 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~VI~~ 318 (407)
-||+||+-|+.- +.+|..|.+.|++|.||+-
T Consensus 5 yDViIVGaGpaG---l~~A~~La~~G~~V~v~Er 35 (397)
T 3oz2_A 5 YDVLVVGGGPGG---STAARYAAKYGLKTLMIEK 35 (397)
T ss_dssp EEEEEECCSHHH---HHHHHHHHHTTCCEEEECS
T ss_pred CCEEEECcCHHH---HHHHHHHHHCCCcEEEEeC
Confidence 389999988743 3356678889999999985
No 205
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=20.18 E-value=20 Score=29.92 Aligned_cols=38 Identities=11% Similarity=0.102 Sum_probs=27.0
Q ss_pred eecCCcEEEEEechhHH-HHHHHHHHHhhCCCCceEEEe
Q 015415 281 VRPGEHVTILTYSRMRY-HVMQAAKTLVNKGYDPEVIDI 318 (407)
Q Consensus 281 l~eG~dv~Iia~G~~~~-~al~Aa~~L~~~Gi~v~VI~~ 318 (407)
+..+.|++||++|.... .--+..+.|++.||.+++.|-
T Consensus 61 l~~~pevliiGTG~~~~~l~p~~~~~l~~~GI~vE~m~T 99 (132)
T 2gm2_A 61 LALNPAVILLGTGERQQFPSTDVLAACLTRGIGLEAMTN 99 (132)
T ss_dssp HHHCCSEEEEECTTSCCCCCHHHHHHHHHHTCEEEEECH
T ss_pred HhcCCCEEEECCCCCCCcCCHHHHHHHHHcCCEEEEeCH
Confidence 34568999999997543 223455678888999888763
No 206
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=20.15 E-value=2.2e+02 Score=27.84 Aligned_cols=59 Identities=14% Similarity=0.195 Sum_probs=38.3
Q ss_pred CcEEEEEech-hHHHHHHHHHHHhhCCCCceEEEecccccCchhhHHHHHhcCCcEEEEecCcccc
Q 015415 285 EHVTILTYSR-MRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTG 349 (407)
Q Consensus 285 ~dv~Iia~G~-~~~~al~Aa~~L~~~Gi~v~VI~~~~l~Pfd~~~l~~~~~~~~~vvvvEe~~~~G 349 (407)
.++. +.+|. ....|++.++.|+++|+.|++...... .+. ...-+..+.|+.+.+....|
T Consensus 337 ~~v~-v~~~~~~~~~a~~~a~~LR~~G~~v~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~ 396 (400)
T 3od1_A 337 EQTC-ILFSNERRFEAIELARKKRANGEAVVLQDLAGV----TDV-DAMSSNYQDVIYCIGTAGRG 396 (400)
T ss_dssp CCEE-EEECGGGHHHHHHHHHHHHTTTCCEEEEEGGGC----SCH-HHHHTTSSEEEEECSCC---
T ss_pred CeEE-EEECcHHHHHHHHHHHHHHHCCCEEEEEecCCh----hHH-HHHHcCCCEEEEEecCCCCC
Confidence 3454 45775 467899999999999999999776653 122 22234567888887765433
No 207
>3le1_A Phosphotransferase system, HPR-related proteins; HPR PTS phosphotransfer, kinase; 1.51A {Thermoanaerobacter tengcongensis} SCOP: d.94.1.0 PDB: 3le3_A 3lnw_A 3lfg_A 3le5_A
Probab=20.14 E-value=1.2e+02 Score=23.09 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=26.3
Q ss_pred eecCCcEEEEEechhHHHHHHHHHHHhhCCC
Q 015415 281 VRPGEHVTILTYSRMRYHVMQAAKTLVNKGY 311 (407)
Q Consensus 281 l~eG~dv~Iia~G~~~~~al~Aa~~L~~~Gi 311 (407)
++.|..++|.+.|.--..|+++...|-+++.
T Consensus 55 ~~~G~~i~i~a~G~De~~A~~~l~~l~~~~f 85 (88)
T 3le1_A 55 VSQGNVVKLSAEGDDEEEAIKALVDLIESKF 85 (88)
T ss_dssp CCTTCEEEEEEESTTHHHHHHHHHHHHHTTT
T ss_pred CCCCCEEEEEEeCCCHHHHHHHHHHHHHhcc
Confidence 4678899999999999999999988866654
Done!