RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 015415
(407 letters)
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta;
pyruvate_dehydrogenase_complex, human,
multienzyme_complex_component; HET: TPP; 1.90A {Homo
sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B*
3exf_B* 3exg_B 3exh_B* 3exi_B
Length = 341
Score = 508 bits (1311), Expect = 0.0
Identities = 126/339 (37%), Positives = 210/339 (61%), Gaps = 7/339 (2%)
Query: 74 SAASTSASKQGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGD 133
+ ++ + +A+ +G++EE++RD V ++GE+V Y G+YKV++GL KYGD
Sbjct: 2 RGSHHHHHHGSLQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGD 61
Query: 134 LRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFT 193
R++DTPI+E F G+ +GAAM GLRPI E M F + A +Q+ N+ +Y SGG
Sbjct: 62 KRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQP 121
Query: 194 IPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVIL 253
+PIV RGP G + A+HSQ +++ PG+++V+ +AKGL+K+AIR NPV++
Sbjct: 122 VPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVV 181
Query: 254 FEHVLLYNLKERIPDE----EYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNK 309
E+ L+Y + P E +++ + +A++ R G H+T++++SR H ++AA L +
Sbjct: 182 LENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKE 241
Query: 310 GYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITEN--FHDYL 367
G + EVI++R+++P D+ TI S+ KT+ ++ VE G+GA + A I E F ++L
Sbjct: 242 GVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAF-NFL 300
Query: 368 DAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLC 406
DAP V ++ DVP PYA LE+ ++ Q I+ A+++
Sbjct: 301 DAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKKTL 339
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase,
multienzyme complex, oxidoreductase; HET: TDP; 2.0A
{Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2
PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Length = 324
Score = 416 bits (1073), Expect = e-146
Identities = 112/321 (34%), Positives = 188/321 (58%), Gaps = 2/321 (0%)
Query: 86 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENS 145
++ + +A+ + L E+ DP+V + GEDVG GG ++ T+GL ++G+ RV DTP+AE+
Sbjct: 2 QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESG 61
Query: 146 FTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVG 205
G+ IG A+ G RP+ E GF+ + I + Y +GG++ +PI IR P G G
Sbjct: 62 IGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGG 121
Query: 206 RQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYN-LKE 264
HS LE PG+++V STPY+AKGL+ +AIR +PVI EH+ LY ++
Sbjct: 122 VHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLYRSFRQ 181
Query: 265 RIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPF 324
+P+ EY + +A++ R G+ +TI+ Y M + ++AA L +G EV+D+R+++P
Sbjct: 182 EVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTVQPL 241
Query: 325 DLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYA 384
D+ TI S++KT R ++V+E R GI A++ A I E L+AP++ +++ D P+A
Sbjct: 242 DIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVYPFA 301
Query: 385 GTLEEWTVVQPAQIVTAVEQL 405
E + ++ +++
Sbjct: 302 -QAESVWLPNFKDVIETAKKV 321
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2)
tetramer, structural genomics; HET: TDP; 1.90A {Thermus
thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B*
1umc_B* 1umb_B*
Length = 324
Score = 411 bits (1059), Expect = e-144
Identities = 127/321 (39%), Positives = 194/321 (60%), Gaps = 3/321 (0%)
Query: 86 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENS 145
+ + +AL L+EEM +DP V V+GEDVG GG + VT+GL KYG RV+DTP++E +
Sbjct: 3 LMTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAA 62
Query: 146 FTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVG 205
G +G A GLRP+ E ++ F+Q+ + L Y SGGQFT P+V+R P G G
Sbjct: 63 IVGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGG 122
Query: 206 RQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLY-NLKE 264
+ G HSQ E++F G+++VA STPY+AKGL+KAAIR E+PV+ E LY ++KE
Sbjct: 123 VRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRSVKE 182
Query: 265 RIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPF 324
+P+E+Y + +A + R G+ +T++ Y + V+QAA L G EV+D+R+L P+
Sbjct: 183 EVPEEDYTLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLRTLMPW 242
Query: 325 DLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYA 384
D + NS+ KT RV++V + R + + A I E+ D L AP + ++ D P PYA
Sbjct: 243 DYEAVMNSVAKTGRVVLVSDAPRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYA 302
Query: 385 GTLEEWTVVQPAQIVTAVEQL 405
++ + +I+ A ++
Sbjct: 303 --QDKLYLPTVTRILNAAKRA 321
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase;
2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Length = 369
Score = 405 bits (1042), Expect = e-141
Identities = 125/365 (34%), Positives = 200/365 (54%), Gaps = 7/365 (1%)
Query: 44 RSDGSVNLGSNQRSRRTQQLITNAVATKADSAASTSASKQG--HELLLFEALREGLEEEM 101
S G V GS + + N + + G + +A+ L EEM
Sbjct: 6 HSSGLVPRGSGMKETAAAKFERNHMDSPDLGTDDDDKMVAGVVMMANMAKAINMALHEEM 65
Query: 102 DRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPI 161
+RD V V+GEDVG GG + VT+GL +++G RV+DTP+ E G +G AM GL+P+
Sbjct: 66 ERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTPLNEGGILGFAMGMAMAGLKPV 125
Query: 162 VEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQLGAEHSQRLESYFQ 221
E + F+ L +++ N+ L Y SGG + P+V+R P G G + G HS E+ F
Sbjct: 126 AEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTRGGLYHSNSPEAIFV 185
Query: 222 SIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNL-KERIPDEEYICNLEEAEM 280
PG+ +V STPYNAKGL+KAAIR ++PV+ E +LY +E +P+ +Y+ + +A +
Sbjct: 186 HTPGLVVVMPSTPYNAKGLLKAAIRGDDPVVFLEPKILYRAPREEVPEGDYVVEIGKARV 245
Query: 281 VRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVL 340
R G+ VT++TY + + ++AA+ + EV+D+++L P D T+ S+ KT R++
Sbjct: 246 AREGDDVTLVTYGAVVHKALEAAERV---KASVEVVDLQTLNPLDFDTVLKSVSKTGRLI 302
Query: 341 IVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVT 400
I + +TGG+GA + A + E D L AP++ L+ DVP + +I+
Sbjct: 303 IAHDSPKTGGLGAEVRALVAEKALDRLTAPVIRLAGPDVPQSPI-AADAAYAPTVERIIK 361
Query: 401 AVEQL 405
A+E +
Sbjct: 362 AIEYV 366
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP
cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas
putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Length = 338
Score = 389 bits (1001), Expect = e-135
Identities = 124/337 (36%), Positives = 183/337 (54%), Gaps = 22/337 (6%)
Query: 86 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENS 145
+ + +ALR ++ ++RD +V V G+DVG++GG ++ T+GL KYG RV D PI+E+
Sbjct: 4 TMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESG 63
Query: 146 FTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVG 205
G +G GLRP+VE + A +QI + L Y S G+F P+ +R P G G
Sbjct: 64 IVGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGGG 123
Query: 206 RQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYN---- 261
G HSQ E+ F + G++ V S PY+AKGL+ A+I ++PVI E LYN
Sbjct: 124 IYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYNGPFD 183
Query: 262 -------------LKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVN 308
+PD Y L++A + RPG V++LTY Y AA+
Sbjct: 184 GHHDRPVTPWSKHPHSAVPDGYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAAE---E 240
Query: 309 KGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLD 368
G D EVID+RSL P DL TI S+KKT R ++V E RT G GA L + + E+ +L+
Sbjct: 241 SGVDAEVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGFGAELVSLVQEHCFHHLE 300
Query: 369 APIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 405
API ++ D P P+A E P+++ A++++
Sbjct: 301 APIERVTGWDTPYPHA--QEWAYFPGPSRVGAALKKV 335
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase,
multi-enzyme complex, acylation, oxidative
decarboxylation, maple syrup urine disease; HET: TDP;
1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB:
1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B*
1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B*
2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Length = 342
Score = 388 bits (999), Expect = e-134
Identities = 110/334 (32%), Positives = 171/334 (51%), Gaps = 6/334 (1%)
Query: 75 AASTSASKQGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDL 134
Q ++ LF+++ L+ + +DP + GEDV +GG ++ T GL DKYG
Sbjct: 9 DPEPREYGQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKD 67
Query: 135 RVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTI 194
RV +TP+ E G GIG A+TG I E ++ AF+QI N Y SG F
Sbjct: 68 RVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNC 127
Query: 195 -PIVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVIL 253
+ IR P G HSQ E++F PGI++V +P+ AKGL+ + I +NP I
Sbjct: 128 GSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIF 187
Query: 254 FEHVLLYN-LKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNK-GY 311
FE +LY E +P E Y L +AE+++ G VT++ + + + + A K G
Sbjct: 188 FEPKILYRAAAEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGV 247
Query: 312 DPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPI 371
EVID+R++ P+D+ TI S+ KT R+LI E TGG + +++ + E L+API
Sbjct: 248 SCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPI 307
Query: 372 VCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 405
+ D P P+ E + + + A+ ++
Sbjct: 308 SRVCGYDTPFPHI--FEPFYIPDKWKCYDALRKM 339
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS,
transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Length = 629
Score = 56.4 bits (137), Expect = 9e-09
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 11/99 (11%)
Query: 278 AEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTH 337
E ++ G+ V IL + + ++AA+ L G V++ R +KP D + +
Sbjct: 499 WERLKGGDDVVILAGGKALDYALKAAEDLPGVG----VVNARFVKPLDEEML-REVGGRA 553
Query: 338 RVLI-VEECMRTGGIGASLTAAITENFHDY-LDAPIVCL 374
R LI VE+ GG G A+ E + L + L
Sbjct: 554 RALITVEDNTVVGGFG----GAVLEALNSMNLHPTVRVL 588
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid,
transferase; HET: TDP; 2.40A {Escherichia coli}
Length = 621
Score = 54.8 bits (133), Expect = 2e-08
Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 10/98 (10%)
Query: 278 AEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTH 337
+ R GE + IL + + + A++L + ++D+R +KP D I
Sbjct: 497 GIVKRRGEKLAILNFGTLMPEAAKVAESL-----NATLVDMRFVKPLDEALILEMAASHE 551
Query: 338 RVLIVEECMRTGGIGASLTAAITENFHDY-LDAPIVCL 374
++ VEE GG G + + E + P++ +
Sbjct: 552 ALVTVEENAIMGGAG----SGVNEVLMAHRKPVPVLNI 585
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 5e-06
Identities = 50/326 (15%), Positives = 92/326 (28%), Gaps = 84/326 (25%)
Query: 89 LFEALREGLEEEMDRDPHVCV--MG--------------EDV--GHYGGSYKVTKGLADK 130
+ LR+ L E + +V + + V + + +
Sbjct: 136 PYLKLRQALLE-LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 131 YGDL--------RVLDTPIAENSFTG----MGIGAAMTGLRPIVEGMNMGFLLL------ 172
+ +D S + I + LR +++ LL
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 173 ------AFNQISNNCGMLHYTSGGQFT---IPIVIRGPGGVGRQLGAEHSQRLE---SY- 219
AFN +C +L T Q T + + Y
Sbjct: 255 NAKAWNAFN---LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 220 ---FQSIPGIQMVACSTPYNAKGLMKAAIRSENPVIL--FEHVLLYNLKERIPDEEYICN 274
Q +P +++ + P ++ +IR + ++HV L I E +
Sbjct: 312 DCRPQDLP-REVLTTN-PR-RLSIIAESIR-DGLATWDNWKHVNCDKLTTII--ESSLNV 365
Query: 275 LEEAEM---------VRPGEHVTILTYSRM-----RYHVMQ-----AAKTLVNKGYDPEV 315
LE AE P H+ + S + + VM +LV K
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 316 IDIRSLKPFDLYTIGNSIKKTHRVLI 341
I I S+ +L + HR ++
Sbjct: 426 ISIPSIY-LELKVKLENEYALHRSIV 450
Score = 45.6 bits (107), Expect = 2e-05
Identities = 36/248 (14%), Positives = 78/248 (31%), Gaps = 80/248 (32%)
Query: 196 IVIRGPGGVGRQ-LGAE--HSQRLESYFQSIPG----IQMVACSTPYNAKGLMKAAIRSE 248
++I G G G+ + + S +++ + + C++P + +++
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKM---DFKIFWLNLKNCNSP---ETVLE------ 200
Query: 249 NPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKT--L 306
+L L +I D + + + + ++R H +QA L
Sbjct: 201 ---------MLQKLLYQI-DPNWTSRSDHSSNI------------KLRIHSIQAELRRLL 238
Query: 307 VNKGY-------DPEVIDIRSLKPFD-----LYT-----IGNSIKKTHRVLIVEECMRTG 349
+K Y V + ++ F+ L T + + + I +
Sbjct: 239 KSKPYENCLLVLL-NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 350 GIGASLTAAITEN-FHDYLDAPIVCLSSQDVPT-PYA------------GTLEEWTVVQP 395
LT ++ YLD L + + T P T + W V
Sbjct: 298 -----LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 396 AQIVTAVE 403
++ T +E
Sbjct: 353 DKLTTIIE 360
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis
sugar metaboli transferase; HET: TPP; 1.75A {Homo
sapiens} PDB: 3ooy_A*
Length = 616
Score = 44.1 bits (105), Expect = 6e-05
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 266 IPDEEYICNLEEAEMVRPGE--HVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKP 323
I + + +A++V + VT++ + + AA+ L + + V+D ++KP
Sbjct: 478 IYNNNEDFQVGQAKVVLKSKDDQVTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIKP 537
Query: 324 FDLYTIGNSIKKTH-RVLIVEECMRTGGIGASLTAAITEN 362
D I +S + T R+L VE+ GGIG ++++A+
Sbjct: 538 LDRKLILDSARATKGRILTVEDHYYEGGIGEAVSSAVVGE 577
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 4e-04
Identities = 90/462 (19%), Positives = 146/462 (31%), Gaps = 161/462 (34%)
Query: 2 AAIFLG-VGAATALSPSNC--FDS------KKFQLSTRRSLSGRKPWFLVVRSDGSVNLG 52
FLG V ++ + PS FD +F+ L G L +
Sbjct: 61 VGKFLGYV--SSLVEPSKVGQFDQVLNLCLTEFE---NCYLEGNDIHALAAKLLQE---- 111
Query: 53 SNQRSRRTQQLITNAVATKADSAASTSASKQGHELLLFEALREGLEEEMDRDPHVCVMGE 112
++ +T++LI N + A A K+ LF A+ EG + + +
Sbjct: 112 NDTTLVKTKELIKNYIT--ARIMAKRPFDKK-SNSALFRAVGEG-------NAQLVAI-- 159
Query: 113 DVGHYGGSYKVTKGLADKY-GDLRVL-DTPIAENSFTGMGIGAAMTGLRPIVE------- 163
+GG +G D Y +LR L T + G I + L ++
Sbjct: 160 ----FGG-----QGNTDDYFEELRDLYQTY---HVLVGDLIKFSAETLSELIRTTLDAEK 207
Query: 164 ----GMN-MGFL----------LLAFNQISNNCGMLHYTSGGQFTIPIVIRG--PGGVGR 206
G+N + +L L IS C ++ + + + G PG +
Sbjct: 208 VFTQGLNILEWLENPSNTPDKDYLLSIPIS--CPLIGVIQLAHYVVTAKLLGFTPGELRS 265
Query: 207 QL-GA-EHSQRL------------ESYFQ-SIPGIQM-----VAC--STP---------- 234
L GA HSQ L ES+F I + V C + P
Sbjct: 266 YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE 325
Query: 235 ---YNAKGL---MKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVT 288
N +G+ M +I + + ++V N +P G+ V
Sbjct: 326 DSLENNEGVPSPM-LSISNLTQEQVQDYVNKTN--SHLP---------------AGKQVE 367
Query: 289 ILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKT--------HRVL 340
I +LVN G V+ S P LY + +++K R+
Sbjct: 368 I---------------SLVN-GAKNLVV---SGPPQSLYGLNLTLRKAKAPSGLDQSRIP 408
Query: 341 IVEECMRTGGIGAS-LTAAITENFH-DYLDAPIVCLSSQDVP 380
E R L + FH L P L ++D+
Sbjct: 409 FSE---RKLKFSNRFLP--VASPFHSHLL-VPASDLINKDLV 444
Score = 40.8 bits (95), Expect = 8e-04
Identities = 43/292 (14%), Positives = 80/292 (27%), Gaps = 102/292 (34%)
Query: 164 GMNMGFLL---LA---FNQISNNCGMLHYTSGGQFTIP-IVIRGPGGVGRQLGAEHSQRL 216
GM M A +N+ N H+ F+I IVI P + G E +R+
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADN-----HFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 217 -ESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPV---ILFEHVLLYNLKERIPDEEYI 272
E+Y M+ T + K + + N F
Sbjct: 1685 RENY------SAMI-FETIVDGKLKTEKIFKEINEHSTSYTFRS----------EKGL-- 1725
Query: 273 CNLEEAEMVRPGEHVT---ILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTI 329
+ + T + + + +++ KG L P D
Sbjct: 1726 LSATQ---------FTQPALTLMEKAAFEDLKS------KG----------LIPADATFA 1760
Query: 330 GNS-------------------IKKTH-RVLIVEECMRTGGIGASLTAAITENFHDYLDA 369
G+S ++ R + ++ + +G S I N
Sbjct: 1761 GHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN-----PG 1815
Query: 370 PIVCLSSQDVPTPYAGTLEEWT--VVQPA-------QIVT-----AVEQLCQ 407
+ SQ+ + + T +V+ Q V A++ +
Sbjct: 1816 RVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTN 1867
Score = 33.1 bits (75), Expect = 0.18
Identities = 30/154 (19%), Positives = 51/154 (33%), Gaps = 54/154 (35%)
Query: 85 HELLLFEALREGLEEEMDRDPHVCVMGED----VGHYGGSYKVTKGLADKYGDLRVLDTP 140
H LL A + + +++ ++ +V +D V Y G DLRVL
Sbjct: 428 HSHLLVPAS-DLINKDLVKN-NVSFNAKDIQIPV------YDTFDG-----SDLRVLSGS 474
Query: 141 IAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIP-IVIR 199
I+E IV+ I + + + QF I+
Sbjct: 475 ISER----------------IVD------------CIIRLP--VKWETTTQFKATHILDF 504
Query: 200 GPGGVGRQLGAEHSQRLESYFQSIPGIQMVACST 233
GPGG LG + + G++++ T
Sbjct: 505 GPGGASG-LGVLTHRNKDGT-----GVRVIVAGT 532
Score = 28.5 bits (63), Expect = 5.5
Identities = 37/236 (15%), Positives = 57/236 (24%), Gaps = 113/236 (47%)
Query: 235 YNAKGLMKAAIRSENPVILFEHVL-----LY-------NLKERIPDEEYICNLEEAEMVR 282
A+ + K ++ LF V L N ++Y EE
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGN------TDDY---FEE----- 172
Query: 283 PGEHVTILTYSRMRYH---------VMQAAKTL---------VNKGYDPEVIDIRS-LK- 322
L R Y + +A+TL K + + ++I L+
Sbjct: 173 -------L---RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF-TQGLNILEWLEN 221
Query: 323 ----PFDLYT---------IG-----------NSIKKTHRVLIVEECMRTGGIGASLTAA 358
P Y IG + T L TG +TA
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV 281
Query: 359 IT------ENFHDYLD----------------APIVCLSS---QD-------VPTP 382
E+F + P L +D VP+P
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural
genomics, southeast collaboratory for structural
genomics, secsg; 2.30A {Pyrococcus furiosus}
Length = 395
Score = 36.0 bits (84), Expect = 0.017
Identities = 18/104 (17%), Positives = 41/104 (39%), Gaps = 13/104 (12%)
Query: 245 IRSENPVILFEHVL-----LYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHV 299
R+ + + + + K+ I E LE+AE+ ++ +
Sbjct: 255 PRTVDREVHERLIKRIVEKIEKNKKDIFTYETY-ELEDAEIG-------VVATGIVARSA 306
Query: 300 MQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVE 343
++A K L +G ++ I ++ PFD I ++ ++ + E
Sbjct: 307 LRAVKMLREEGIKAGLLKIETIWPFDFELIERIAERVDKLYVPE 350
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional,
biotin-dependent, ligase; HET: KCX COA AGS; 2.00A
{Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Length = 1165
Score = 35.8 bits (83), Expect = 0.027
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 90 FEALREGLEEEMDRDPHVCVMGEDVGH--YGGSYKVTKGLADKYGDLRVLDTPIAENSFT 147
+A R+ +E++++R+ E + Y + +D YG + VL TP F
Sbjct: 972 LDAERKVIEKKLEREVSDF---EFASYLMYPKVFTDFALASDTYGPVSVLPTPAY---FY 1025
Query: 148 GMGIG 152
G+ G
Sbjct: 1026 GLADG 1030
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A
{Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A*
3hb9_A*
Length = 1150
Score = 35.7 bits (83), Expect = 0.033
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
Query: 90 FEALREGLEEEMDRDPHVCVMGEDVGHYG---GSYKVTKGLADKYGDLRVLDTPIAENSF 146
FE +RE LEEE +D+ Y Y+ ++YG+L +LDTP F
Sbjct: 955 FEKVRELLEEEQQGPV----TEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTF---F 1007
Query: 147 TGMGIG 152
GM G
Sbjct: 1008 FGMRNG 1013
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural
genomics, PSI-2, protein structu initiative; 1.90A
{Thermoplasma acidophilum}
Length = 118
Score = 31.6 bits (72), Expect = 0.13
Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 274 NLEEAEMVRPGE-HVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNS 332
N E+A ++ E +T +T+ + ++ + L +G ++ ++ PF + N
Sbjct: 2 NAEKAVLIGEKEADITFVTWGSQKGPILDVIEDLKEEGISANLLYLKMFSPFPTEFVKNV 61
Query: 333 IKKTHRVLIVE 343
+ + V+ VE
Sbjct: 62 LSSANLVIDVE 72
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 29.9 bits (67), Expect = 1.8
Identities = 14/117 (11%), Positives = 34/117 (29%), Gaps = 24/117 (20%)
Query: 210 AEHSQRLESYFQSIPGIQMVACSTPYNA---KG-LMKAAIRSENP----VILFEHVLL-- 259
E+ ++ + SI + + G L + LF+H L+
Sbjct: 306 LENIDKIAQWQSSIEDWEGEDLLVRSSELIYSGELTRVTQPQAKSQQRMFFLFDHQLIYC 365
Query: 260 ---------YNLKERIPDEEY-ICNLEEAEMVRPGEHV----TILTYSRMRYHVMQA 302
K R+ + + +LE+ + + + + H++
Sbjct: 366 KKDLLRRDVLYYKGRLDMDGLEVVDLEDGKDRDLHVSIKNAFRLHRGATGDSHLLCT 422
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown
function, aldolase superfamily, class I aldolase, KDPG
aldolase domain; 1.84A {Oleispira antarctica} PDB:
3vcr_A
Length = 217
Score = 28.7 bits (64), Expect = 3.0
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 9/55 (16%)
Query: 321 LKPFDLYTI-GNSIKKTHRVLIVE-ECMRTGGIGASLTAAITENFHDYLDAPIVC 373
LK F I G + K + + TGGI +N+ +YL P V
Sbjct: 136 LKCFPASAIGGAKLLKAWSGPFPDIQFCPTGGISK-------DNYKEYLGLPNVI 183
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1
PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Length = 214
Score = 28.3 bits (63), Expect = 3.5
Identities = 12/58 (20%), Positives = 17/58 (29%), Gaps = 9/58 (15%)
Query: 318 IRSLKPFDLYTIG-NSIKKTHRVLIVE-ECMRTGGIGASLTAAITENFHDYLDAPIVC 373
++ K F G + + TGGI N+ DYL V
Sbjct: 130 LKEFKFFPAEANGGVKALQAIAGPFSQVRFCPTGGISP-------ANYRDYLALKSVL 180
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal;
HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Length = 212
Score = 28.3 bits (63), Expect = 3.8
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 9/59 (15%)
Query: 317 DIRSLKPFDLYTIGNSIKKTHRVLIVEE--CMRTGGIGASLTAAITENFHDYLDAPIVC 373
++LK F G K + ++ + GG+ EN ++DA
Sbjct: 121 GAQALKIFPSSAFGPQYIKALKAVLPSDIAVFAVGGVTP-------ENLAQWIDAGCAG 172
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus
norvegicus} SCOP: a.87.1.1 b.55.1.1
Length = 402
Score = 28.7 bits (64), Expect = 4.0
Identities = 18/124 (14%), Positives = 39/124 (31%), Gaps = 25/124 (20%)
Query: 210 AEHSQRLESYFQSI---PGIQMVACSTPYNAKG-LMKAAIRSENP----VILFEHVLL-- 259
E+ ++ + S+ G ++ S+ G + LF+H ++
Sbjct: 229 LENIDKIAQWQASVLDWEGDDILDRSSELIYTGEMAWIYQPYGRNQQRVFFLFDHQMVLC 288
Query: 260 ---------YNLKERIPDEEY-ICNLEEAEMVRPGEHV----TILTYSRMRYHVMQAAKT 305
K RI ++Y + ++E+ + + H+ AK
Sbjct: 289 KKDLIRRDILYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNAFKLHNKETEEVHLFF-AKK 347
Query: 306 LVNK 309
L K
Sbjct: 348 LEEK 351
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding,
biotin, disease mutation, gluconeogenesis, ligase, lipid
synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens}
PDB: 3bg9_A
Length = 718
Score = 28.8 bits (65), Expect = 4.3
Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 18/70 (25%)
Query: 90 FEALREGLEEEMDRDPHVCVMGEDVGHYGGSY----KVTKGLA---DKYGDLRVLDTPIA 142
+AL + L + + EDV S V +G L L+T +
Sbjct: 527 LQALEKELVDRHGEEVTP----EDVL----SAAMYPDVFAHFKDFTATFGPLDSLNTRLF 578
Query: 143 ENSFTGMGIG 152
G I
Sbjct: 579 ---LQGPKIA 585
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA
repair, exonuclease, endonuclease; HET: 1PE; 1.90A
{Neisseria meningitidis}
Length = 256
Score = 27.4 bits (62), Expect = 8.7
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 8/34 (23%)
Query: 90 FEALREGLEEEMDRDPHVCVMG--------EDVG 115
F AL E + +EM R + ++G D
Sbjct: 124 FAALTEFVRDEMTRHGKLVLLGDFNIAPADADCY 157
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading
bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Length = 197
Score = 27.2 bits (60), Expect = 8.9
Identities = 21/129 (16%), Positives = 40/129 (31%), Gaps = 18/129 (13%)
Query: 52 GSNQRSRRTQQLITNAVATKADSAASTSASKQGHELLLFEALREGLEEEMDRDPHVCVMG 111
GS R+ T +L A+A + QG + + + + L + +
Sbjct: 10 GSPSRNSTTAKLAEYALA-----HVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAV 64
Query: 112 EDVGH----------YGGSYK-VTKGLADKYGDLRVLDTP--IAENSFTGMGIGAAMTGL 158
+ + Y SY + K D + + + A GL
Sbjct: 65 DATCNADGLIVATPIYKASYTGLLKAFLDILPQFALAGKAALPLATGGSPAHVLALDYGL 124
Query: 159 RPIVEGMNM 167
RP++ M +
Sbjct: 125 RPVLHSMGV 133
>2b34_A F35G2.2, MAR1 ribonuclease; isochorismatase family, structural
genomics, PSI, protein structure initiative; 2.14A
{Caenorhabditis elegans}
Length = 199
Score = 27.1 bits (60), Expect = 9.4
Identities = 18/97 (18%), Positives = 38/97 (39%), Gaps = 19/97 (19%)
Query: 236 NAKGLMKAAIRSENPVILFEHV------LLYNLKERIPDEEYI--------CNLEEAEMV 281
++ L+ AA P I+ E + LKE + + I C + +
Sbjct: 39 TSRRLIDAARILSIPTIVTEQYPKGLGHTVPTLKEGLAENTPIFDKTKFSMCIPPTEDTL 98
Query: 282 RPGEHVTILTYSRMRYH--VMQAAKTLVNKGYDPEVI 316
+ ++V ++ + H V+Q L+ +G + V+
Sbjct: 99 KKVQNVILVG---IEAHVCVLQTTYDLLERGLNVHVV 132
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 27.6 bits (61), Expect = 9.4
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 15/64 (23%)
Query: 342 VEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTA 401
VE M+ ++L ++E+ + V EW P Q+V
Sbjct: 410 VESEMK-----STLATLLSESLQHF----------NQVDVNDHSKYSEWVDNYPTQLVLL 454
Query: 402 VEQL 405
Q+
Sbjct: 455 TSQI 458
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.394
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,262,598
Number of extensions: 389634
Number of successful extensions: 955
Number of sequences better than 10.0: 1
Number of HSP's gapped: 931
Number of HSP's successfully gapped: 42
Length of query: 407
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 311
Effective length of database: 4,021,377
Effective search space: 1250648247
Effective search space used: 1250648247
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.2 bits)