RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 015415
(407 letters)
>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate
dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId:
9606]}
Length = 192
Score = 187 bits (477), Expect = 1e-58
Identities = 78/186 (41%), Positives = 122/186 (65%)
Query: 86 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENS 145
++ + +A+ +G++EE++RD V ++GE+V Y G+YKV++GL KYGD R++DTPI+E
Sbjct: 3 QVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMG 62
Query: 146 FTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVG 205
F G+ +GAAM GLRPI E M F + A +Q+ N+ +Y SGG +PIV RGP G
Sbjct: 63 FAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGAS 122
Query: 206 RQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKER 265
+ A+HSQ +++ PG+++V+ +AKGL+K+AIR NPV++ E+ L+Y +
Sbjct: 123 AGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFE 182
Query: 266 IPDEEY 271
P E
Sbjct: 183 FPPEAQ 188
>d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB,
N-terminal domain {Bacillus stearothermophilus [TaxId:
1422]}
Length = 192
Score = 181 bits (459), Expect = 5e-56
Identities = 73/188 (38%), Positives = 112/188 (59%), Gaps = 1/188 (0%)
Query: 86 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENS 145
++ + +A+ + L E+ DP+V + GEDVG GG ++ T+GL ++G+ RV DTP+AE+
Sbjct: 2 QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESG 61
Query: 146 FTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVG 205
G+ IG A+ G RP+ E GF+ + I + Y +GG++ +PI IR P G G
Sbjct: 62 IGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGG 121
Query: 206 RQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYN-LKE 264
HS LE PG+++V STPY+AKGL+ +AIR +PVI EH+ LY ++
Sbjct: 122 VHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLYRSFRQ 181
Query: 265 RIPDEEYI 272
+P+ EY
Sbjct: 182 EVPEGEYT 189
>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B),
Pyr module {Pseudomonas putida [TaxId: 303]}
Length = 204
Score = 177 bits (451), Expect = 1e-54
Identities = 72/201 (35%), Positives = 108/201 (53%), Gaps = 2/201 (0%)
Query: 86 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENS 145
+ + +ALR ++ ++RD +V V G+DVG++GG ++ T+GL KYG RV D PI+E+
Sbjct: 4 TMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESG 63
Query: 146 FTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVG 205
G +G GLRP+VE + A +QI + L Y S G+F P+ +R P G G
Sbjct: 64 IVGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGGG 123
Query: 206 RQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKER 265
G HSQ E+ F + G++ V S PY+AKGL+ A+I ++PVI E LYN
Sbjct: 124 IYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYNGPFD 183
Query: 266 IPDEEYIC--NLEEAEMVRPG 284
+ + + V G
Sbjct: 184 GHHDRPVTPWSKHPHSAVPDG 204
>d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate
dehydrogenase, Pyr module {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 191
Score = 177 bits (449), Expect = 2e-54
Identities = 78/181 (43%), Positives = 114/181 (62%), Gaps = 1/181 (0%)
Query: 89 LFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTG 148
+ +A+ L EEM+RD V V+GEDVG GG + VT+GL +++G RV+DTP+ E G
Sbjct: 10 MAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTPLNEGGILG 69
Query: 149 MGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQL 208
+G AM GL+P+ E + F+ L +++ N+ L Y SGG + P+V+R P G G +
Sbjct: 70 FAMGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTRG 129
Query: 209 GAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNL-KERIP 267
G HS E+ F PG+ +V STPYNAKGL+KAAIR ++PV+ E +LY +E +P
Sbjct: 130 GLYHSNSPEAIFVHTPGLVVVMPSTPYNAKGLLKAAIRGDDPVVFLEPKILYRAPREEVP 189
Query: 268 D 268
+
Sbjct: 190 E 190
>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid
dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId:
9606]}
Length = 203
Score = 159 bits (404), Expect = 7e-48
Identities = 70/194 (36%), Positives = 100/194 (51%), Gaps = 3/194 (1%)
Query: 78 TSASKQGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVL 137
Q ++ LF+++ L+ + +DP + GEDV +GG ++ T GL DKYG RV
Sbjct: 11 PREYGQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVF 69
Query: 138 DTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIV 197
+TP+ E G GIG A+TG I E ++ AF+QI N Y SG F +
Sbjct: 70 NTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSL 129
Query: 198 I-RGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEH 256
R P G HSQ E++F PGI++V +P+ AKGL+ + I +NP I FE
Sbjct: 130 TIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEP 189
Query: 257 VLLYNLK-ERIPDE 269
+LY E +P E
Sbjct: 190 KILYRAAAEEVPIE 203
>d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid
dehydrogenase, Pyr module {Thermus thermophilus [TaxId:
274]}
Length = 186
Score = 153 bits (386), Expect = 3e-45
Identities = 86/182 (47%), Positives = 119/182 (65%), Gaps = 1/182 (0%)
Query: 89 LFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTG 148
+ +AL L+EEM +DP V V+GEDVG GG + VT+GL KYG RV+DTP++E + G
Sbjct: 5 MVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVG 64
Query: 149 MGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGVGRQL 208
+G A GLRP+ E ++ F+Q+ + L Y SGGQFT P+V+R P G G +
Sbjct: 65 AALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGGVRG 124
Query: 209 GAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYN-LKERIP 267
G HSQ E++F G+++VA STPY+AKGL+KAAIR E+PV+ E LY +KE +P
Sbjct: 125 GHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRSVKEEVP 184
Query: 268 DE 269
+E
Sbjct: 185 EE 186
>d1qs0b2 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenase E1b,
C-domain {Pseudomonas putida [TaxId: 303]}
Length = 134
Score = 100 bits (249), Expect = 4e-26
Identities = 51/135 (37%), Positives = 75/135 (55%), Gaps = 5/135 (3%)
Query: 271 YICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIG 330
Y L++A + RPG V++LTY V A G D EVID+RSL P DL TI
Sbjct: 2 YTVPLDKAAITRPGNDVSVLTYGTT---VYVAQVAAEESGVDAEVIDLRSLWPLDLDTIV 58
Query: 331 NSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEW 390
S+KKT R ++V E RT G GA L + + E+ +L+API ++ D P P+A E
Sbjct: 59 ESVKKTGRCVVVHEATRTCGFGAELVSLVQEHCFHHLEAPIERVTGWDTPYPHA--QEWA 116
Query: 391 TVVQPAQIVTAVEQL 405
P+++ A++++
Sbjct: 117 YFPGPSRVGAALKKV 131
>d1umdb2 c.48.1.2 (B:188-324) Branched-chain alpha-keto acid
dehydrogenase {Thermus thermophilus [TaxId: 274]}
Length = 137
Score = 100 bits (249), Expect = 4e-26
Identities = 41/136 (30%), Positives = 73/136 (53%), Gaps = 2/136 (1%)
Query: 270 EYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTI 329
+Y + +A + R G+ +T++ Y + V+QAA L G EV+D+R+L P+D +
Sbjct: 1 DYTLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLRTLMPWDYEAV 60
Query: 330 GNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEE 389
NS+ KT RV++V + R + + A I E+ D L AP + ++ D P PYA ++
Sbjct: 61 MNSVAKTGRVVLVSDAPRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYA--QDK 118
Query: 390 WTVVQPAQIVTAVEQL 405
+ +I+ A ++
Sbjct: 119 LYLPTVTRILNAAKRA 134
>d2bfdb2 c.48.1.2 (B:205-342) Branched-chain alpha-keto acid
dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Length = 138
Score = 95.6 bits (237), Expect = 2e-24
Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 3/136 (2%)
Query: 271 YICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKT-LVNKGYDPEVIDIRSLKPFDLYTI 329
Y L +AE+++ G VT++ + + + + A G EVID+R++ P+D+ TI
Sbjct: 2 YNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLRTIIPWDVDTI 61
Query: 330 GNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEE 389
S+ KT R+LI E TGG + +++ + E L+API + D P P+ E
Sbjct: 62 CKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPHI--FEP 119
Query: 390 WTVVQPAQIVTAVEQL 405
+ + + A+ ++
Sbjct: 120 FYIPDKWKCYDALRKM 135
>d1w85b2 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-beta, PdhB,
C-terminal domain {Bacillus stearothermophilus [TaxId:
1422]}
Length = 132
Score = 95.6 bits (237), Expect = 2e-24
Identities = 39/129 (30%), Positives = 75/129 (58%), Gaps = 1/129 (0%)
Query: 277 EAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKT 336
+A++ R G+ +TI+ Y M + ++AA L +G EV+D+R+++P D+ TI S++KT
Sbjct: 2 KADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTVQPLDIETIIGSVEKT 61
Query: 337 HRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPA 396
R ++V+E R GI A++ A I E L+AP++ +++ D P+A E +
Sbjct: 62 GRAIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVYPFA-QAESVWLPNFK 120
Query: 397 QIVTAVEQL 405
++ +++
Sbjct: 121 DVIETAKKV 129
>d2ozlb2 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate
dehydrogenase, C-domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 138
Score = 90.6 bits (224), Expect = 1e-22
Identities = 47/130 (36%), Positives = 82/130 (63%), Gaps = 1/130 (0%)
Query: 277 EAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKT 336
+A++ R G H+T++++SR H ++AA L +G + EVI++R+++P D+ TI S+ KT
Sbjct: 6 KAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKT 65
Query: 337 HRVLIVEECMRTGGIGASLTAAITEN-FHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQP 395
+ ++ VE G+GA + A I E ++LDAP V ++ DVP PYA LE+ ++ Q
Sbjct: 66 NHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQV 125
Query: 396 AQIVTAVEQL 405
I+ A+++
Sbjct: 126 KDIIFAIKKT 135
>d1ik6a2 c.48.1.2 (A:192-326) E1-beta subunit of pyruvate
dehydrogenase, C-domain {Archaeon Pyrobaculum aerophilum
[TaxId: 13773]}
Length = 135
Score = 88.3 bits (218), Expect = 9e-22
Identities = 40/136 (29%), Positives = 75/136 (55%), Gaps = 4/136 (2%)
Query: 270 EYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTI 329
+Y+ + +A + R G+ VT++TY + + ++AA+ + EV+D+++L P D T+
Sbjct: 1 DYVVEIGKARVAREGDDVTLVTYGAVVHKALEAAERVK---ASVEVVDLQTLNPLDFDTV 57
Query: 330 GNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEE 389
S+ KT R++I + +TGG+GA + A + E D L AP++ L+ DVP +
Sbjct: 58 LKSVSKTGRLIIAHDSPKTGGLGAEVRALVAEKALDRLTAPVIRLAGPDVPQSPIA-ADA 116
Query: 390 WTVVQPAQIVTAVEQL 405
+I+ A+E +
Sbjct: 117 AYAPTVERIIKAIEYV 132
>d1zt2a1 d.264.1.1 (A:3-329) DNA primase small subunit PriA
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 327
Score = 28.1 bits (62), Expect = 1.9
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 25 FQLSTRRSLSGRKPWFLVVRSDGSV-NLGSNQRS 57
F L + SG + + + V G+ L S++R
Sbjct: 162 FGLKPKVYFSGNRGFHVQVDCYGNCALLDSDERK 195
>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima
[TaxId: 2336]}
Length = 202
Score = 27.3 bits (60), Expect = 2.8
Identities = 20/186 (10%), Positives = 52/186 (27%), Gaps = 40/186 (21%)
Query: 215 RLESYFQSIPGIQMVACSTPYNAKGLMKAAI-----------RSENPVILFEHVLLYNLK 263
++E F+ + ++ ++ AK A + + + + K
Sbjct: 1 KMEELFKKHKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEK 60
Query: 264 ERIPDEEYICNLEEAEMVR---------PGEHVTILTYSRMRYHV-------MQAAKTLV 307
I + ++E+ P I + + + +
Sbjct: 61 GAIIGAGTVTSVEQCRKAVESGAEFIVSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAM 120
Query: 308 NKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYL 367
G+ I L P ++ +K + + TGG+ +N ++
Sbjct: 121 KLGHT-----ILKLFPGEVVG-PQFVKAMKGPFPNVKFVPTGGVNL-------DNVCEWF 167
Query: 368 DAPIVC 373
A ++
Sbjct: 168 KAGVLA 173
>d2pbdp1 d.110.1.1 (P:1-139) Profilin (actin-binding protein) {Human
(Homo sapiens), isoform I [TaxId: 9606]}
Length = 139
Score = 26.8 bits (59), Expect = 3.2
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 312 DPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYL 367
+D+R+ T ++ KT + L++ M G+ L +L
Sbjct: 81 GEFSMDLRTKSTGGAPTFNVTVTKTDKTLVL--LMGKEGVHGGLINKKCYEMASHL 134
>d1ni5a3 b.153.1.2 (A:315-432) tRNA-Ile-lysidine synthetase, TilS,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 118
Score = 26.5 bits (58), Expect = 3.3
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 179 NNCGMLHYTSGGQFTIP-----IVIR-GPGGVGRQLGAEHSQRLESYFQ 221
G + +GG P + +R G+ +G ++L+ +Q
Sbjct: 20 AGLGSVQLNAGGDIRPPRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQ 68
>d1uc8a1 c.30.1.6 (A:1-88) Lysine biosynthesis enzyme LysX,
N-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 88
Score = 25.2 bits (55), Expect = 5.4
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 287 VTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSL 321
+ IL Y R+R + G + + + +L
Sbjct: 2 LAIL-YDRIRPDERMLFERAEALGLPYKKVYVPAL 35
>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId:
562]}
Length = 213
Score = 25.7 bits (56), Expect = 9.8
Identities = 10/51 (19%), Positives = 15/51 (29%), Gaps = 7/51 (13%)
Query: 323 PFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVC 373
P + +++ TGGI N+ DYL V
Sbjct: 136 PAEANGGVKALQAIAGPFSQVRFCPTGGISP-------ANYRDYLALKSVL 179
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.394
Gapped
Lambda K H
0.267 0.0697 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,483,012
Number of extensions: 68716
Number of successful extensions: 245
Number of sequences better than 10.0: 1
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 25
Length of query: 407
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 320
Effective length of database: 1,213,086
Effective search space: 388187520
Effective search space used: 388187520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.6 bits)