BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015416
(407 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 14/114 (12%)
Query: 156 SPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGAT 215
SP+ L +D K G + EA LY E GV +Y Y +L+ C + +
Sbjct: 24 SPEAL-LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSP 82
Query: 216 ---------YFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLK 260
F++M+ + PN A + G + V D+ + FD MVK++K
Sbjct: 83 NPGLSRGFDIFKQMIVDKVVPNEATFTN--GARLAVAK-DDPEMAFD-MVKQMK 132
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 156 SPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDAC 204
SP+ L +D K G + EA LY E GV +Y Y +L+ C
Sbjct: 24 SPEAL-LKQKLDXCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVC 71
>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer
Length = 395
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 205 FEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDA 264
F+V+ G RK++ ++P A+ N+++ +L +L E S + + D
Sbjct: 85 FKVSHKPSGLVMARKLIHLEIKP--AIRNQIIREL---QVLHECNSPYIVGFYGAFYSDG 139
Query: 265 SYKFMMKALSDGGKLDEILEIVGGI 289
M+ + DGG LD++L+ G I
Sbjct: 140 EISICMEHM-DGGSLDQVLKKAGRI 163
>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3DY7|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3E8N|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) Complexed With A Potent Inhibitor
Rdea119 And Mgatp
pdb|3V01|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions.
pdb|3V04|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions
Length = 341
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 205 FEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDA 264
F+V+ G RK++ ++P A+ N+++ +L +L E S + + D
Sbjct: 23 FKVSHKPSGLVMARKLIHLEIKP--AIRNQIIREL---QVLHECNSPYIVGFYGAFYSDG 77
Query: 265 SYKFMMKALSDGGKLDEILEIVGGI 289
M+ + DGG LD++L+ G I
Sbjct: 78 EISICMEHM-DGGSLDQVLKKAGRI 101
>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3EQB|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
Length = 333
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 205 FEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDA 264
F+V+ G RK++ ++P A+ N+++ +L +L E S + + D
Sbjct: 23 FKVSHKPSGLVMARKLIHLEIKP--AIRNQIIREL---QVLHECNSPYIVGFYGAFYSDG 77
Query: 265 SYKFMMKALSDGGKLDEILEIVGGI 289
M+ + DGG LD++L+ G I
Sbjct: 78 EISICMEHM-DGGSLDQVLKKAGRI 101
>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN3|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN9|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4ANB|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs
Length = 301
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 205 FEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDA 264
F+V+ G RK++ ++P A+ N+++ +L +L E S + + D
Sbjct: 26 FKVSHKPSGLVMARKLIHLEIKP--AIRNQIIREL---QVLHECNSPYIVGFYGAFYSDG 80
Query: 265 SYKFMMKALSDGGKLDEILEIVGGI 289
M+ + DGG LD++L+ G I
Sbjct: 81 EISICMEHM-DGGSLDQVLKKAGRI 104
>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With
Compound 1, Atp-Gs And Mg2p
pdb|3EQD|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Atp-Gs
And Mg2p
pdb|3EQF|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With K252a
And Mg2p
pdb|3EQG|A Chain A, X-ray Structure Of The Human Mitogen-activated Protein
Kinase Kinase 1 (mek1) In A Ternary Complex With Pd, Adp
And Mg2p
pdb|3EQH|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With U0126,
Adp And Mg2p
pdb|3EQI|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Adp And
Mg2p
Length = 360
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 205 FEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDA 264
F+V+ G RK++ ++P A+ N+++ +L +L E S + + D
Sbjct: 50 FKVSHKPSGLVMARKLIHLEIKP--AIRNQIIREL---QVLHECNSPYIVGFYGAFYSDG 104
Query: 265 SYKFMMKALSDGGKLDEILEIVGGI 289
M+ + DGG LD++L+ G I
Sbjct: 105 EISICMEHM-DGGSLDQVLKKAGRI 128
>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4987655 And Mgamp-Pnp
pdb|3OS3|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4858061 And Mgatp
Length = 307
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 205 FEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDA 264
F+V+ G RK++ ++P A+ N+++ +L +L E S + + D
Sbjct: 23 FKVSHKPSGLVMARKLIHLEIKP--AIRNQIIREL---QVLHECNSPYIVGFYGAFYSDG 77
Query: 265 SYKFMMKALSDGGKLDEILEIVGGI 289
M+ + DGG LD++L+ G I
Sbjct: 78 EISICMEHM-DGGSLDQVLKKAGRI 101
>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp
pdb|3PP1|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgatp
Length = 328
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 205 FEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDA 264
F+V+ G RK++ ++P A+ N+++ +L +L E S + + D
Sbjct: 23 FKVSHKPSGLVMARKLIHLEIKP--AIRNQIIREL---QVLHECNSPYIVGFYGAFYSDG 77
Query: 265 SYKFMMKALSDGGKLDEILEIVGGI 289
M+ + DGG LD++L+ G I
Sbjct: 78 EISICMEHM-DGGSLDQVLKKAGRI 101
>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound
Length = 322
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 205 FEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDA 264
F+V+ G RK++ ++P A+ N+++ +L +L E S + + D
Sbjct: 23 FKVSHKPSGLVMARKLIHLEIKP--AIRNQIIREL---QVLHECNSPYIVGFYGAFYSDG 77
Query: 265 SYKFMMKALSDGGKLDEILEIVGGI 289
M+ + DGG LD++L+ G I
Sbjct: 78 EISICMEHM-DGGSLDQVLKKAGRI 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,136,926
Number of Sequences: 62578
Number of extensions: 396619
Number of successful extensions: 987
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 980
Number of HSP's gapped (non-prelim): 16
length of query: 407
length of database: 14,973,337
effective HSP length: 101
effective length of query: 306
effective length of database: 8,652,959
effective search space: 2647805454
effective search space used: 2647805454
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)