BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015416
(407 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M3A8|PP273_ARATH Pentatricopeptide repeat-containing protein At3g49240
OS=Arabidopsis thaliana GN=EMB1796 PE=2 SV=1
Length = 629
Score = 506 bits (1302), Expect = e-142, Method: Compositional matrix adjust.
Identities = 249/383 (65%), Positives = 307/383 (80%), Gaps = 2/383 (0%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M VKGFV DPVVYSYLM+G V++ D+DGV +L++ELKEKLGG V DGVVYG LMKGYFMK
Sbjct: 227 MAVKGFVVDPVVYSYLMMGCVKNSDADGVLKLYQELKEKLGGFVDDGVVYGQLMKGYFMK 286
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
ME+EAMECY EAVGENS V+MSA+A N VL+AL NGKFDEALKLFD +K EHNPP+ L
Sbjct: 287 EMEKEAMECYEEAVGENSKVRMSAMAYNYVLEALSENGKFDEALKLFDAVKKEHNPPRHL 346
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
AVNLG+FNVM +GYC G+F++A+EVFR+MG+++CSPDTLSFNNL++QLC N +LAEAE+
Sbjct: 347 AVNLGTFNVMVNGYCAGGKFEEAMEVFRQMGDFKCSPDTLSFNNLMNQLCDNELLAEAEK 406
Query: 181 LYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240
LYGEM +K V PDEYTYGLLMD CF+ ++D+GA Y++ MV+S LRPNLAVYNRL +L+
Sbjct: 407 LYGEMEEKNVKPDEYTYGLLMDTCFKEGKIDEGAAYYKTMVESNLRPNLAVYNRLQDQLI 466
Query: 241 QVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEE 300
+ G LD+AKSFFD+MV KLKMDD +YKF+M+ALS+ G+LDE+L+IV +LDD + SEE
Sbjct: 467 KAGKLDDAKSFFDMMVSKLKMDDEAYKFIMRALSEAGRLDEMLKIVDEMLDDDTVRVSEE 526
Query: 301 LQEFVKGELSKEGREEEVVKLMEKKEREKAEAKAREAEAAEAAKRSARAAIASLIPSKFG 360
LQEFVK EL K GRE ++ KLME+KER KAEAKA+E AE K++ IA+LIP K
Sbjct: 527 LQEFVKEELRKGGREGDLEKLMEEKERLKAEAKAKELADAEEKKKAQSINIAALIPPKAV 586
Query: 361 DKVGGTEMADNANANEAASVAEA 383
++ E A NEA V EA
Sbjct: 587 EE--KKETAKLLWENEAGGVEEA 607
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 79/170 (46%), Gaps = 10/170 (5%)
Query: 155 CSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGA 214
C P + N ++ + +L+G ++ G+ P+ TY L+ A +V + +
Sbjct: 126 CRPTIFTVNTVLAAQLRQAKYGALLQLHGFINQAGIAPNIITYNLIFQAYLDVRKPEIAL 185
Query: 215 TYFRKMVDSG-LRPNLAVYNRLVGKLVQVGMLDEAKSFF-DIMVKKLKMDDASYKFMMKA 272
+++ +D+ L P++A + LV LV L++A D+ VK +D Y ++M
Sbjct: 186 EHYKLFIDNAPLNPSIATFRILVKGLVSNDNLEKAMEIKEDMAVKGFVVDPVVYSYLMMG 245
Query: 273 LSDGGKLDEILEI-------VGGILDDGGIEFSEELQEFVKGELSKEGRE 315
D +L++ +GG +DDG + + + ++ + E+ KE E
Sbjct: 246 CVKNSDADGVLKLYQELKEKLGGFVDDGVV-YGQLMKGYFMKEMEKEAME 294
Score = 40.0 bits (92), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 10/176 (5%)
Query: 120 LAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAE 179
L ++ +F ++ G + A+E+ M D + ++ L+ KN
Sbjct: 197 LNPSIATFRILVKGLVSNDNLEKAMEIKEDMAVKGFVVDPVVYSYLMMGCVKNSDADGVL 256
Query: 180 ELYGEMSDK--GVNPDEYTYGLLMDACFEVNRVDDGATYFRKMV--DSGLRPNLAVYNRL 235
+LY E+ +K G D YG LM F + + + V +S +R + YN +
Sbjct: 257 KLYQELKEKLGGFVDDGVVYGQLMKGYFMKEMEKEAMECYEEAVGENSKVRMSAMAYNYV 316
Query: 236 VGKLVQVGMLDEAKSFFDIMVKK------LKMDDASYKFMMKALSDGGKLDEILEI 285
+ L + G DEA FD + K+ L ++ ++ M+ GGK +E +E+
Sbjct: 317 LEALSENGKFDEALKLFDAVKKEHNPPRHLAVNLGTFNVMVNGYCAGGKFEEAMEV 372
>sp|Q9SY69|PPR29_ARATH Pentatricopeptide repeat-containing protein At1g10270
OS=Arabidopsis thaliana GN=GRP23 PE=1 SV=1
Length = 913
Score = 164 bits (416), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 107/332 (32%), Positives = 169/332 (50%), Gaps = 10/332 (3%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M KG AD VY+ L+ G++ GD D F+ELK K V DG+V + M+ +F K
Sbjct: 278 MLSKGQAADSTVYNNLIRGYLDLGDFDKAVEFFDELKSKC--TVYDGIVNATFMEYWFEK 335
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
G ++EAME Y + + +M N +L+ GK DEA LF+ M + H PP L
Sbjct: 336 GNDKEAMESYRSLL--DKKFRMHPPTGNVLLEVFLKFGKKDEAWALFNEMLDNHAPPNIL 393
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCS-P---DTLSFNNLIDQLCKNGMLA 176
+VN + +M + G F +AI F+K+G S P D L + N++ + C+ GML
Sbjct: 394 SVNSDTVGIMVNECFKMGEFSEAINTFKKVGSKVTSKPFVMDYLGYCNIVTRFCEQGMLT 453
Query: 177 EAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLV 236
EAE + E + + D ++ ++DA + R+DD +MVD LR R+
Sbjct: 454 EAERFFAEGVSRSLPADAPSHRAMIDAYLKAERIDDAVKMLDRMVDVNLRVVADFGARVF 513
Query: 237 GKLVQVGMLDEAKSFFDIM-VKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGI 295
G+L++ G L E+ M ++ K D + Y +++ L DG LD+ +IVG ++ +
Sbjct: 514 GELIKNGKLTESAEVLTKMGEREPKPDPSIYDVVVRGLCDGDALDQAKDIVGEMIRH-NV 572
Query: 296 EFSEELQEFVKGELSKEGREEEVVKLMEKKER 327
+ L+EF+ K GR EE+ K++ R
Sbjct: 573 GVTTVLREFIIEVFEKAGRREEIEKILNSVAR 604
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 2/127 (1%)
Query: 139 RFKDAIEVFRKM-GEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGE-MSDKGVNPDEYT 196
R+ ++I +F+ + P+ +S+N +I+ C G + EA E+Y +++ P T
Sbjct: 195 RYSESISLFQYFFKQSNIVPNVVSYNQIINAHCDEGNVDEALEVYRHILANAPFAPSSVT 254
Query: 197 YGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMV 256
Y L + R+ D A+ R+M+ G + VYN L+ + +G D+A FFD +
Sbjct: 255 YRHLTKGLVQAGRIGDAASLLREMLSKGQAADSTVYNNLIRGYLDLGDFDKAVEFFDELK 314
Query: 257 KKLKMDD 263
K + D
Sbjct: 315 SKCTVYD 321
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 82/357 (22%), Positives = 153/357 (42%), Gaps = 63/357 (17%)
Query: 22 RDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEA-------- 73
R +S +F+ F K +V + V Y ++ + +G +EA+E Y
Sbjct: 195 RYSESISLFQYFF----KQSNIVPNVVSYNQIINAHCDEGNVDEALEVYRHILANAPFAP 250
Query: 74 -----------------VGENSSVKMSAVANNSVLDALCNN---------GKFDEALKLF 107
+G+ +S+ ++ D+ N G FD+A++ F
Sbjct: 251 SSVTYRHLTKGLVQAGRIGDAASLLREMLSKGQAADSTVYNNLIRGYLDLGDFDKAVEFF 310
Query: 108 DRMKNEHNPPKRLAVNLGSFN-VMADGYCGQGRFKDAIEVFRKM--GEYRCSPDTLSFNN 164
D +K+ + V G N + + +G K+A+E +R + ++R P T N
Sbjct: 311 DELKS------KCTVYDGIVNATFMEYWFEKGNDKEAMESYRSLLDKKFRMHPPT--GNV 362
Query: 165 LIDQLCKNGMLAEAEELYGEMSDKGVNP-----DEYTYGLLMDACFEVNRVDDGATYFRK 219
L++ K G EA L+ EM D P + T G++++ CF++ + F+K
Sbjct: 363 LLEVFLKFGKKDEAWALFNEMLDNHAPPNILSVNSDTVGIMVNECFKMGEFSEAINTFKK 422
Query: 220 MVDSGLRPNLAV-----YNRLVGKLVQVGMLDEAKSFF-DIMVKKLKMDDASYKFMMKAL 273
V S + V Y +V + + GML EA+ FF + + + L D S++ M+ A
Sbjct: 423 -VGSKVTSKPFVMDYLGYCNIVTRFCEQGMLTEAERFFAEGVSRSLPADAPSHRAMIDAY 481
Query: 274 SDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKK-EREK 329
++D+ ++++ ++ D + + V GEL K G+ E +++ K ERE
Sbjct: 482 LKAERIDDAVKMLDRMV-DVNLRVVADFGARVFGELIKNGKLTESAEVLTKMGEREP 537
Score = 36.2 bits (82), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 2/115 (1%)
Query: 210 VDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKM--DDASYK 267
+D + R+ V S RP + N ++ + + E+ S F K+ + + SY
Sbjct: 161 LDAASKLARQSVFSNTRPTVFTCNAIIAAMYRAKRYSESISLFQYFFKQSNIVPNVVSYN 220
Query: 268 FMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLM 322
++ A D G +DE LE+ IL + S + L + GR + L+
Sbjct: 221 QIINAHCDEGNVDEALEVYRHILANAPFAPSSVTYRHLTKGLVQAGRIGDAASLL 275
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 153/291 (52%), Gaps = 12/291 (4%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M GF + V Y ++ + G + L +++E+ + D V Y ++ G
Sbjct: 219 MVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEER--NIKLDAVKYSIIIDGLCKD 276
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLF-DRMKNEHNPPKR 119
G + A +NE E K + N+++ CN G++D+ KL D +K + +P
Sbjct: 277 GSLDNAFNLFNEM--EIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISP--- 331
Query: 120 LAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAE 179
N+ +F+V+ D + +G+ ++A ++ ++M + +P+T+++N+LID CK L EA
Sbjct: 332 ---NVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAI 388
Query: 180 ELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKL 239
++ M KG +PD T+ +L++ + NR+DDG FR+M G+ N YN LV
Sbjct: 389 QMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGF 448
Query: 240 VQVGMLDEAKSFFDIMV-KKLKMDDASYKFMMKALSDGGKLDEILEIVGGI 289
Q G L+ AK F MV ++++ D SYK ++ L D G+L++ LEI G I
Sbjct: 449 CQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKI 499
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 139/275 (50%), Gaps = 10/275 (3%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M +KGF AD + Y+ L+ GF G D +L ++ ++ + + V + L+ + +
Sbjct: 289 MEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKR--KISPNVVTFSVLIDSFVKE 346
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
G EA + E + + + + NS++D C + +EA+++ D M ++ P
Sbjct: 347 GKLREADQLLKEMM--QRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDP--- 401
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
++ +FN++ +GYC R D +E+FR+M +T+++N L+ C++G L A++
Sbjct: 402 --DIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKK 459
Query: 181 LYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240
L+ EM + V PD +Y +L+D + ++ F K+ S + ++ +Y ++ +
Sbjct: 460 LFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMC 519
Query: 241 QVGMLDEAKSFF-DIMVKKLKMDDASYKFMMKALS 274
+D+A F + +K +K+D +Y M+ L
Sbjct: 520 NASKVDDAWDLFCSLPLKGVKLDARAYNIMISELC 554
Score = 102 bits (253), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 134/255 (52%), Gaps = 12/255 (4%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M KG D + ++ L+ G+ + D LF E+ L GV+++ V Y +L++G+
Sbjct: 394 MISKGCDPDIMTFNILINGYCKANRIDDGLELFREMS--LRGVIANTVTYNTLVQGFCQS 451
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
G E A + + E V V+ V+ +LD LC+NG+ ++AL++F +++ ++
Sbjct: 452 GKLEVAKKLFQEMVSRR--VRPDIVSYKILLDGLCDNGELEKALEIFGKIEKS-----KM 504
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
+++G + ++ G C + DA ++F + D ++N +I +LC+ L++A+
Sbjct: 505 ELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADI 564
Query: 181 LYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240
L+ +M+++G PDE TY +L+ A + A +M SG +++ ++V ++
Sbjct: 565 LFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTV-KMVINML 623
Query: 241 QVGMLDEAKSFFDIM 255
G LD KSF D++
Sbjct: 624 SSGELD--KSFLDML 636
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 119/241 (49%), Gaps = 7/241 (2%)
Query: 84 AVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDA 143
V N++L+ LC + EAL+L DRM + P L + N + +G C G+ DA
Sbjct: 158 TVIFNTLLNGLCLECRVSEALELVDRMVEMGHKP-----TLITLNTLVNGLCLNGKVSDA 212
Query: 144 IEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDA 203
+ + +M E P+ +++ +++ +CK+G A A EL +M ++ + D Y +++D
Sbjct: 213 VVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDG 272
Query: 204 CFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDE-AKSFFDIMVKKLKMD 262
+ +D+ F +M G + ++ YN L+G G D+ AK D++ +K+ +
Sbjct: 273 LCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPN 332
Query: 263 DASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLM 322
++ ++ + GKL E +++ ++ G + + G KE R EE ++++
Sbjct: 333 VVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDG-FCKENRLEEAIQMV 391
Query: 323 E 323
+
Sbjct: 392 D 392
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 83/194 (42%), Gaps = 2/194 (1%)
Query: 142 DAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLM 201
DA+++FR M + R P + FN L + K L +M KG+ YT +++
Sbjct: 71 DAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMI 130
Query: 202 DACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-LK 260
+ ++ + K++ G P+ ++N L+ L + EA D MV+ K
Sbjct: 131 NCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHK 190
Query: 261 MDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVK 320
+ ++ L GK+ + + ++ ++ + G + +E V + K G+ ++
Sbjct: 191 PTLITLNTLVNGLCLNGKVSDAVVLIDRMV-ETGFQPNEVTYGPVLNVMCKSGQTALAME 249
Query: 321 LMEKKEREKAEAKA 334
L+ K E + A
Sbjct: 250 LLRKMEERNIKLDA 263
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 148/284 (52%), Gaps = 14/284 (4%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEK--LGGVVSDGVVYGSLMKGYFMKGM 62
GF D V Y ++ + G+S LF +++E+ VV +V SL K G
Sbjct: 205 GFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCK----DGS 260
Query: 63 EEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAV 122
++A+ +NE E +K V +S++ LCN+GK+D+ K+ M + P
Sbjct: 261 FDDALSLFNEM--EMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIP----- 313
Query: 123 NLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELY 182
++ +F+ + D + +G+ +A E++ +M +PDT+++N+LID CK L EA +++
Sbjct: 314 DVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMF 373
Query: 183 GEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQV 242
M KG PD TY +L+++ + RVDDG FR++ GL PN YN LV Q
Sbjct: 374 DLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQS 433
Query: 243 GMLDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDEILEI 285
G L+ AK F MV + + +Y ++ L D G+L++ LEI
Sbjct: 434 GKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEI 477
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/326 (26%), Positives = 156/326 (47%), Gaps = 53/326 (16%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M +KG AD V YS L+ G DG D ++ E+ + ++ D V + +L+ + +
Sbjct: 271 MEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGR--NIIPDVVTFSALIDVFVKE 328
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
G EA E YNE + + + NS++D C EA ++FD M ++ P
Sbjct: 329 GKLLEAKELYNEMI--TRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEP--- 383
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
++ +++++ + YC R D + +FR++ P+T+++N L+ C++G L A+E
Sbjct: 384 --DIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKE 441
Query: 181 LYGEMSDKGVNPDEYTYGLLMDA-C-----------FE---------------------- 206
L+ EM +GV P TYG+L+D C FE
Sbjct: 442 LFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMC 501
Query: 207 -VNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLK----- 260
++VDD + F + D G++P++ YN ++G L + G L EA D++ +K+K
Sbjct: 502 NASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEA----DMLFRKMKEDGCT 557
Query: 261 MDDASYKFMMKALSDGGKLDEILEIV 286
DD +Y +++A G L +E++
Sbjct: 558 PDDFTYNILIRAHLGGSGLISSVELI 583
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 98/199 (49%), Gaps = 9/199 (4%)
Query: 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME 63
KG + + + Y+ L+LGF + G + LF+E+ + GV V YG L+ G G
Sbjct: 414 KGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSR--GVPPSVVTYGILLDGLCDNGEL 471
Query: 64 EEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123
+A+E + + + S + + N ++ +CN K D+A LF + ++ P +
Sbjct: 472 NKALEIFEKM--QKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKP-----D 524
Query: 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183
+ ++NVM G C +G +A +FRKM E C+PD ++N LI L + EL
Sbjct: 525 VVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIE 584
Query: 184 EMSDKGVNPDEYTYGLLMD 202
EM G + D T +++D
Sbjct: 585 EMKVCGFSADSSTIKMVID 603
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 107/206 (51%), Gaps = 16/206 (7%)
Query: 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEM 185
+F+ + +G+C +GR +A+ + +M E + PD ++ + LI+ LC G ++EA L M
Sbjct: 142 TFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRM 201
Query: 186 SDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGML 245
+ G PDE TYG +++ + FRKM + ++ ++ Y+ ++ L + G
Sbjct: 202 VEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSF 261
Query: 246 DEAKSFFDIM-VKKLKMDDASYKFMMKALSDGGKLDE----ILEIVGGILDDGGIEFSEE 300
D+A S F+ M +K +K D +Y ++ L + GK D+ + E++G + + FS
Sbjct: 262 DDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSAL 321
Query: 301 LQEFVKGELSKEGREEEVVKLMEKKE 326
+ FV KEG KL+E KE
Sbjct: 322 IDVFV-----KEG------KLLEAKE 336
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 108/211 (51%), Gaps = 6/211 (2%)
Query: 84 AVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDA 143
+ +++++ C G+ EA+ L DRM P +L + + + +G C +GR +A
Sbjct: 140 TITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRP-----DLVTVSTLINGLCLKGRVSEA 194
Query: 144 IEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDA 203
+ + +M EY PD +++ ++++LCK+G A A +L+ +M ++ + Y +++D+
Sbjct: 195 LVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDS 254
Query: 204 CFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDE-AKSFFDIMVKKLKMD 262
+ DD + F +M G++ ++ Y+ L+G L G D+ AK +++ + + D
Sbjct: 255 LCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPD 314
Query: 263 DASYKFMMKALSDGGKLDEILEIVGGILDDG 293
++ ++ GKL E E+ ++ G
Sbjct: 315 VVTFSALIDVFVKEGKLLEAKELYNEMITRG 345
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 95/236 (40%), Gaps = 9/236 (3%)
Query: 99 KFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD 158
K ++A+ LF+ M P + FN + ++ + + M D
Sbjct: 50 KVNDAIDLFESMIQSRPLPTPI-----DFNRLCSAVARTKQYDLVLGFCKGMELNGIEHD 104
Query: 159 TLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDA-CFEVNRVDDGATYF 217
+ +I+ C+ L A + G G PD T+ L++ C E RV +
Sbjct: 105 MYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLE-GRVSEAVALV 163
Query: 218 RKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-LKMDDASYKFMMKALSDG 276
+MV+ RP+L + L+ L G + EA D MV+ + D+ +Y ++ L
Sbjct: 164 DRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKS 223
Query: 277 GKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAEA 332
G L++ +++ I+ S V L K+G ++ + L + E + +A
Sbjct: 224 GNSALALDLFRK-MEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKA 278
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 132 bits (331), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 91/317 (28%), Positives = 147/317 (46%), Gaps = 45/317 (14%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEE 64
G D + + L+ G G L +++ E G + V YG ++ G
Sbjct: 188 GHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEY--GCQPNAVTYGPVLNVMCKSGQTA 245
Query: 65 EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124
AME + E ++K+ AV + ++D LC +G D A LF+ M+ K + N+
Sbjct: 246 LAMELLRKM--EERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEM-----KGITTNI 298
Query: 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGE 184
++N++ G+C GR+ D ++ R M + + +P+ ++F+ LID K G L EAEEL+ E
Sbjct: 299 ITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKE 358
Query: 185 MSDKGVNPDEYTYGLLMDA-CFE----------------------------------VNR 209
M +G+ PD TY L+D C E NR
Sbjct: 359 MIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANR 418
Query: 210 VDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMV-KKLKMDDASYKF 268
+DDG FRKM G+ + YN L+ ++G L+ AK F MV +K+ + +YK
Sbjct: 419 IDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKI 478
Query: 269 MMKALSDGGKLDEILEI 285
++ L D G+ ++ LEI
Sbjct: 479 LLDGLCDNGESEKALEI 495
Score = 115 bits (287), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 154/329 (46%), Gaps = 13/329 (3%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGD-SDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFM 59
M +KG + + Y+ L+ GF G DG L + +K K+ V V + L+ +
Sbjct: 289 MEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNV---VTFSVLIDSFVK 345
Query: 60 KGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKR 119
+G EA E + E + + + + S++D C D+A ++ D M ++ P
Sbjct: 346 EGKLREAEELHKEMI--HRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDP-- 401
Query: 120 LAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAE 179
N+ +FN++ +GYC R D +E+FRKM DT+++N LI C+ G L A+
Sbjct: 402 ---NIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAK 458
Query: 180 ELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKL 239
EL+ EM + V P+ TY +L+D + + F K+ S + ++ +YN ++ +
Sbjct: 459 ELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGM 518
Query: 240 VQVGMLDEAKSFF-DIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFS 298
+D+A F + +K +K +Y M+ L G L E + + +DG
Sbjct: 519 CNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDG 578
Query: 299 EELQEFVKGELSKEGREEEVVKLMEKKER 327
++ L +G + VKL+E+ +R
Sbjct: 579 WTYNILIRAHLG-DGDATKSVKLIEELKR 606
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 105/200 (52%), Gaps = 6/200 (3%)
Query: 83 SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKD 142
+ + +++++ LC G+ EAL+L DRM + P +L + N + +G C G+ +
Sbjct: 157 NTITFSTLINGLCLEGRVSEALELVDRMVEMGHKP-----DLITINTLVNGLCLSGKEAE 211
Query: 143 AIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMD 202
A+ + KM EY C P+ +++ +++ +CK+G A A EL +M ++ + D Y +++D
Sbjct: 212 AMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIID 271
Query: 203 ACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDE-AKSFFDIMVKKLKM 261
+ +D+ F +M G+ N+ YN L+G G D+ AK D++ +K+
Sbjct: 272 GLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINP 331
Query: 262 DDASYKFMMKALSDGGKLDE 281
+ ++ ++ + GKL E
Sbjct: 332 NVVTFSVLIDSFVKEGKLRE 351
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 100/202 (49%), Gaps = 9/202 (4%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M ++G VAD V Y+ L+ GF G + LF+E+ + V + V Y L+ G
Sbjct: 429 MSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSR--KVPPNIVTYKILLDGLCDN 486
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
G E+A+E + + E S +++ N ++ +CN K D+A LF + P K +
Sbjct: 487 GESEKALEIFEKI--EKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSL-----PLKGV 539
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
+ ++N+M G C +G +A +FRKM E +PD ++N LI +G ++ +
Sbjct: 540 KPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVK 599
Query: 181 LYGEMSDKGVNPDEYTYGLLMD 202
L E+ G + D T +++D
Sbjct: 600 LIEELKRCGFSVDASTIKMVID 621
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/266 (23%), Positives = 110/266 (41%), Gaps = 23/266 (8%)
Query: 90 VLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRK 149
+ A+ ++D L L +M+ K +A NL + ++M + +C + A K
Sbjct: 94 LFSAIAKTKQYDLVLALCKQME-----LKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGK 148
Query: 150 MGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNR 209
+ + P+T++F+ LI+ LC G ++EA EL M + G PD T L++ +
Sbjct: 149 IIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGK 208
Query: 210 VDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-LKMDDASYKF 268
+ KMV+ G +PN Y ++ + + G A M ++ +K+D Y
Sbjct: 209 EAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSI 268
Query: 269 MMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKERE 328
++ L G LD + ++ GI + + G GR ++ KL+ +
Sbjct: 269 IIDGLCKHGSLDNAFNLFNE-MEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKR 327
Query: 329 KA----------------EAKAREAE 338
K E K REAE
Sbjct: 328 KINPNVVTFSVLIDSFVKEGKLREAE 353
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/322 (26%), Positives = 148/322 (45%), Gaps = 14/322 (4%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M ++GF D + Y YLM G + G D LF + + + V++ +L+ G+
Sbjct: 313 MLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK------PEIVIFNTLIHGFVTH 366
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
G ++A ++ V V NS++ G AL++ M+N+ P
Sbjct: 367 GRLDDAKAVLSDMVTSYGIVP-DVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKP--- 422
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
N+ S+ ++ DG+C G+ +A V +M P+T+ FN LI CK + EA E
Sbjct: 423 --NVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVE 480
Query: 181 LYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240
++ EM KG PD YT+ L+ EV+ + R M+ G+ N YN L+ +
Sbjct: 481 IFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFL 540
Query: 241 QVGMLDEAKSFFDIMV-KKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSE 299
+ G + EA+ + MV + +D+ +Y ++K L G++D+ + +L DG +
Sbjct: 541 RRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNI 600
Query: 300 ELQEFVKGELSKEGREEEVVKL 321
+ G L + G EE V+
Sbjct: 601 SCNILING-LCRSGMVEEAVEF 621
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 109/210 (51%), Gaps = 7/210 (3%)
Query: 42 GVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFD 101
GVV++ V Y +L+ + +G +EA + NE V + S + + NS++ LC G+ D
Sbjct: 524 GVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSP--LDEITYNSLIKGLCRAGEVD 581
Query: 102 EALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLS 161
+A LF++M + + P + S N++ +G C G ++A+E ++M +PD ++
Sbjct: 582 KARSLFEKMLRDGHAPSNI-----SCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVT 636
Query: 162 FNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMV 221
FN+LI+ LC+ G + + ++ ++ +G+ PD T+ LM + V D + +
Sbjct: 637 FNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGI 696
Query: 222 DSGLRPNLAVYNRLVGKLVQVGMLDEAKSF 251
+ G PN ++ L+ ++ LD + +
Sbjct: 697 EDGFVPNHRTWSILLQSIIPQETLDRRRFY 726
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 115/249 (46%), Gaps = 9/249 (3%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEE 64
G + V ++ L+ F ++ +F E+ K G D + SL+ G +
Sbjct: 454 GLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRK--GCKPDVYTFNSLISGLCEVDEIK 511
Query: 65 EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124
A+ + + E V + V N++++A G+ EA KL + M + +P +
Sbjct: 512 HALWLLRDMISE--GVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEI---- 565
Query: 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGE 184
++N + G C G A +F KM +P +S N LI+ LC++GM+ EA E E
Sbjct: 566 -TYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKE 624
Query: 185 MSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244
M +G PD T+ L++ R++DG T FRK+ G+ P+ +N L+ L + G
Sbjct: 625 MVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGF 684
Query: 245 LDEAKSFFD 253
+ +A D
Sbjct: 685 VYDACLLLD 693
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 127/284 (44%), Gaps = 11/284 (3%)
Query: 12 VYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYN 71
VY L+ +G+ + RL ++K++ G+V ++ S+M+ Y G +
Sbjct: 113 VYQVLIGKLGANGEFKTIDRLLIQMKDE--GIVFKESLFISIMRDYDKAGFPGQTTRLML 170
Query: 72 EAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMA 131
E + S + + + N VL+ L + A +F M + PP L +F V+
Sbjct: 171 E-MRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPP-----TLFTFGVVM 224
Query: 132 DGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVN 191
+C A+ + R M ++ C P+++ + LI L K + EA +L EM G
Sbjct: 225 KAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCV 284
Query: 192 PDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSF 251
PD T+ ++ + +R+++ A +M+ G P+ Y L+ L ++G +D AK
Sbjct: 285 PDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAK-- 342
Query: 252 FDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGI 295
D+ + K + + ++ G+LD+ ++ ++ GI
Sbjct: 343 -DLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGI 385
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 82/190 (43%), Gaps = 14/190 (7%)
Query: 143 AIEVFRKMGE---YRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGL 199
++E+F G YR S D + LI +L NG + L +M D+G+ E +
Sbjct: 94 SMELFSWTGSQNGYRHSFDV--YQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFIS 151
Query: 200 LMDACFEVNRVDDGATYFRKMVD----SGLRPNLAVYNRLVGKLVQVGMLDEAKS-FFDI 254
+M + ++ R M++ P YN ++ LV A + F+D+
Sbjct: 152 IMR---DYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDM 208
Query: 255 MVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGR 314
+ +K+ ++ +MKA ++D L ++ + G + S Q + LSK R
Sbjct: 209 LSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHS-LSKCNR 267
Query: 315 EEEVVKLMEK 324
E ++L+E+
Sbjct: 268 VNEALQLLEE 277
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 125 bits (315), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 136/275 (49%), Gaps = 10/275 (3%)
Query: 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAM 67
AD V+YS ++ + D LF E+ K G+ D Y SL+ G +A
Sbjct: 238 ADVVIYSTVIDSLCKYRHVDDALNLFTEMDNK--GIRPDVFTYSSLISCLCNYGRWSDAS 295
Query: 68 ECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSF 127
++ + + + V NS++DA GK EA KLFD M P N+ ++
Sbjct: 296 RLLSDML--ERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDP-----NIVTY 348
Query: 128 NVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSD 187
N + +G+C R +A ++F M C PD +++N LI+ CK + + EL+ +MS
Sbjct: 349 NSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSR 408
Query: 188 KGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDE 247
+G+ + TY L+ F+ + D+ F++MV G+ PN+ YN L+ L + G L++
Sbjct: 409 RGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEK 468
Query: 248 AKSFFDIMVK-KLKMDDASYKFMMKALSDGGKLDE 281
A F+ + K K++ D +Y M + + GK+++
Sbjct: 469 AMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVED 503
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/312 (23%), Positives = 145/312 (46%), Gaps = 46/312 (14%)
Query: 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME 63
KG D YS L+ G RL ++ E+ + + V + SL+ + +G
Sbjct: 269 KGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLER--KINPNVVTFNSLIDAFAKEGKL 326
Query: 64 EEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123
EA + ++E + S+ + V NS+++ C + + DEA ++F M ++ P +
Sbjct: 327 IEAEKLFDEMI--QRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLP-----D 379
Query: 124 LGSFNVMADGYCGQGRFKDAIEVFRKM-----------------GEYRCS---------- 156
+ ++N + +G+C + D +E+FR M G ++ S
Sbjct: 380 VVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFK 439
Query: 157 --------PDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVN 208
P+ +++N L+D LCKNG L +A ++ + + PD YTY ++ + +
Sbjct: 440 QMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAG 499
Query: 209 RVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDA-SYK 267
+V+DG F + G++P++ YN ++ + G+ +EA + F M + + D+ +Y
Sbjct: 500 KVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYN 559
Query: 268 FMMKA-LSDGGK 278
+++A L DG K
Sbjct: 560 TLIRAHLRDGDK 571
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 112/239 (46%), Gaps = 8/239 (3%)
Query: 48 VVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLF 107
V SL+ G+ EA+ ++ V + V +++ L + K EA+ L
Sbjct: 136 VTLNSLLNGFCHGNRISEAVALVDQMV--EMGYQPDTVTFTTLVHGLFQHNKASEAVALV 193
Query: 108 DRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLID 167
+RM + P +L ++ + +G C +G A+ + KM + + D + ++ +ID
Sbjct: 194 ERMVVKGCQP-----DLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVID 248
Query: 168 QLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRP 227
LCK + +A L+ EM +KG+ PD +TY L+ R D + M++ + P
Sbjct: 249 SLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINP 308
Query: 228 NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDEILEI 285
N+ +N L+ + G L EA+ FD M+++ + + +Y ++ +LDE +I
Sbjct: 309 NVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQI 367
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 106/243 (43%), Gaps = 35/243 (14%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M K + D V Y+ L+ GF + LF ++ + G+V + V Y +L+ G+F
Sbjct: 371 MVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRR--GLVGNTVTYTTLIHGFFQA 428
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
+ A + + V + V + + N++LD LC NGK ++A+ +F+ ++ P
Sbjct: 429 SDCDNAQMVFKQMVSD--GVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIY 486
Query: 121 AVNLGS------------------------------FNVMADGYCGQGRFKDAIEVFRKM 150
N+ S +N M G+C +G ++A +F KM
Sbjct: 487 TYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKM 546
Query: 151 GEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRV 210
E PD+ ++N LI ++G A + EL EM D TYGL+ D + R+
Sbjct: 547 KEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVTDMLHD-GRL 605
Query: 211 DDG 213
D G
Sbjct: 606 DKG 608
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 129/293 (44%), Gaps = 20/293 (6%)
Query: 64 EEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123
+EA++ + E V S S V + +L A+ KFD + ++M+ ++ N
Sbjct: 47 DEAVDLFGEMV--KSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKME-----ILGVSHN 99
Query: 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183
L ++N+M + C + + A+ + KM + P ++ N+L++ C ++EA L
Sbjct: 100 LYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVD 159
Query: 184 EMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG 243
+M + G PD T+ L+ F+ N+ + +MV G +P+L Y ++ L + G
Sbjct: 160 QMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRG 219
Query: 244 MLDEAKSFFDIMVK-KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQ 302
D A + + M K K++ D Y ++ +L +D+ L + +D+ GI
Sbjct: 220 EPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTE-MDNKGIRPDVFTY 278
Query: 303 EFVKGELSKEGREEEVVKLMEKKEREK-----------AEAKAREAEAAEAAK 344
+ L GR + +L+ K +A A+E + EA K
Sbjct: 279 SSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEK 331
Score = 37.0 bits (84), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 74/170 (43%), Gaps = 6/170 (3%)
Query: 160 LSFNNLIDQLCKNGMLA----EAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGAT 215
LS++ ++L +N +L EA +L+GEM P + L+ A ++ + D +
Sbjct: 27 LSYDGYREKLSRNALLHLKLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVIS 86
Query: 216 YFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-LKMDDASYKFMMKALS 274
+ KM G+ NL YN ++ L + L A + M+K + ++
Sbjct: 87 FGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFC 146
Query: 275 DGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEK 324
G ++ E + +V +++ G + V G L + + E V L+E+
Sbjct: 147 HGNRISEAVALVDQMVEMGYQPDTVTFTTLVHG-LFQHNKASEAVALVER 195
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 125 bits (315), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 138/282 (48%), Gaps = 10/282 (3%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M +KGF AD ++Y+ L+ GF G D +L ++ ++ + D V + +L+ + +
Sbjct: 273 MEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKR--KITPDVVAFSALIDCFVKE 330
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
G EA E + E + + V S++D C + D+A + D M ++ P
Sbjct: 331 GKLREAEELHKEMI--QRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGP--- 385
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
N+ +FN++ +GYC D +E+FRKM DT+++N LI C+ G L A+E
Sbjct: 386 --NIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKE 443
Query: 181 LYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240
L+ EM + V PD +Y +L+D + + F K+ S + ++ +YN ++ +
Sbjct: 444 LFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMC 503
Query: 241 QVGMLDEAKSFF-DIMVKKLKMDDASYKFMMKALSDGGKLDE 281
+D+A F + +K +K D +Y M+ L G L E
Sbjct: 504 NASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSE 545
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 142/311 (45%), Gaps = 45/311 (14%)
Query: 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECY 70
+ + L+ G +G L + + E G + V YG ++K G AME
Sbjct: 178 ITLNALVNGLCLNGKVSDAVLLIDRMVET--GFQPNEVTYGPVLKVMCKSGQTALAMELL 235
Query: 71 NEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVM 130
+ E +K+ AV + ++D LC +G D A LF+ M+ K ++ + +
Sbjct: 236 RKM--EERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEME-----IKGFKADIIIYTTL 288
Query: 131 ADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGV 190
G+C GR+ D ++ R M + + +PD ++F+ LID K G L EAEEL+ EM +G+
Sbjct: 289 IRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGI 348
Query: 191 NPDEYTYGLLMDA-CFE----------------------------------VNRVDDGAT 215
+PD TY L+D C E N +DDG
Sbjct: 349 SPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLE 408
Query: 216 YFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMV-KKLKMDDASYKFMMKALS 274
FRKM G+ + YN L+ ++G L+ AK F MV ++++ D SYK ++ L
Sbjct: 409 LFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLC 468
Query: 275 DGGKLDEILEI 285
D G+ ++ LEI
Sbjct: 469 DNGEPEKALEI 479
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 100/202 (49%), Gaps = 9/202 (4%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M ++G VAD V Y+ L+ GF G + LF+E+ + V D V Y L+ G
Sbjct: 413 MSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSR--RVRPDIVSYKILLDGLCDN 470
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
G E+A+E + + E S +++ N ++ +CN K D+A LF + P K +
Sbjct: 471 GEPEKALEIFEKI--EKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSL-----PLKGV 523
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
++ ++N+M G C +G +A +FRKM E SP+ ++N LI G ++ +
Sbjct: 524 KPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAK 583
Query: 181 LYGEMSDKGVNPDEYTYGLLMD 202
L E+ G + D T +++D
Sbjct: 584 LIEEIKRCGFSVDASTVKMVVD 605
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 80/157 (50%), Gaps = 1/157 (0%)
Query: 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEM 185
+F+ + +G C +GR +A+E+ +M E P ++ N L++ LC NG +++A L M
Sbjct: 144 TFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRM 203
Query: 186 SDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGML 245
+ G P+E TYG ++ + + RKM + ++ + Y+ ++ L + G L
Sbjct: 204 VETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSL 263
Query: 246 DEAKSFFDIM-VKKLKMDDASYKFMMKALSDGGKLDE 281
D A + F+ M +K K D Y +++ G+ D+
Sbjct: 264 DNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDD 300
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 107/241 (44%), Gaps = 11/241 (4%)
Query: 44 VSDG---VVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKF 100
VSDG V Y ++ + E++A++ + E S + + + + + ++
Sbjct: 31 VSDGKGKVSYRERLRSGIVDIKEDDAVDLFQEMT--RSRPRPRLIDFSRLFSVVARTKQY 88
Query: 101 DEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTL 160
D L L +M+ K +A NL + ++M + C + A K+ + PDT+
Sbjct: 89 DLVLDLCKQME-----LKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTV 143
Query: 161 SFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKM 220
+F+ LI+ LC G ++EA EL M + G P T L++ +V D +M
Sbjct: 144 TFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRM 203
Query: 221 VDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIM-VKKLKMDDASYKFMMKALSDGGKL 279
V++G +PN Y ++ + + G A M +K+K+D Y ++ L G L
Sbjct: 204 VETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSL 263
Query: 280 D 280
D
Sbjct: 264 D 264
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 148/284 (52%), Gaps = 13/284 (4%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M VKG D V Y ++ G + G+ D L ++++ G + +D V+Y +++ G
Sbjct: 206 MVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEK--GKIEADVVIYNTIIDGLCKY 263
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLF-DRMKNEHNPPKR 119
++A + +N+ E +K N ++ LCN G++ +A +L D ++ NP
Sbjct: 264 KHMDDAFDLFNKM--ETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINP--- 318
Query: 120 LAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYR-CSPDTLSFNNLIDQLCKNGMLAEA 178
+L FN + D + +G+ +A +++ +M + + C PD +++N LI CK + E
Sbjct: 319 ---DLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEG 375
Query: 179 EELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGK 238
E++ EMS +G+ + TY L+ F+ D+ F++MV G+ P++ YN L+
Sbjct: 376 MEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDG 435
Query: 239 LVQVGMLDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDE 281
L G ++ A F+ M K+ +K+D +Y M++AL GK+++
Sbjct: 436 LCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVED 479
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 113/240 (47%), Gaps = 9/240 (3%)
Query: 48 VVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLF 107
V SL+ G+ EA+ ++ V + V +++ L + K EA+ L
Sbjct: 146 VTLNSLLNGFCHGNRISEAVALVDQMV--EMGYQPDTVTFTTLVHGLFQHNKASEAVALV 203
Query: 108 DRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLID 167
+RM + P +L ++ + +G C +G A+ + KM + + D + +N +ID
Sbjct: 204 ERMVVKGCQP-----DLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIID 258
Query: 168 QLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRP 227
LCK + +A +L+ +M KG+ PD +TY L+ R D + M++ + P
Sbjct: 259 GLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINP 318
Query: 228 NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKM--DDASYKFMMKALSDGGKLDEILEI 285
+L +N L+ V+ G L EA+ +D MVK D +Y ++K +++E +E+
Sbjct: 319 DLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEV 378
Score = 82.0 bits (201), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 117/255 (45%), Gaps = 20/255 (7%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M K D V ++ L+ FV++G +L++E+ K D V Y +L+KG+
Sbjct: 311 MLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEM-VKSKHCFPDVVAYNTLIKGFCKY 369
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKF-----DEALKLFDRMKNEHN 115
EE ME + E + + N+V +G F D A +F +M ++
Sbjct: 370 KRVEEGMEVFRE-------MSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGV 422
Query: 116 PPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGML 175
P ++ ++N++ DG C G + A+ VF M + D +++ +I+ LCK G +
Sbjct: 423 HP-----DIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKV 477
Query: 176 AEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRL 235
+ +L+ +S KGV P+ TY +M ++ F +M + G PN YN L
Sbjct: 478 EDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTL 537
Query: 236 VGKLVQVGMLDEAKS 250
+ ++ G DEA S
Sbjct: 538 IRARLRDG--DEAAS 550
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 98/204 (48%), Gaps = 6/204 (2%)
Query: 83 SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKD 142
S V + +L A+ KFD + L ++M+N ++ NL ++++ + +C + +
Sbjct: 74 SIVEFSKLLSAIAKMNKFDLVISLGEQMQN-----LGISHNLYTYSIFINYFCRRSQLSL 128
Query: 143 AIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMD 202
A+ + KM + P ++ N+L++ C ++EA L +M + G PD T+ L+
Sbjct: 129 ALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVH 188
Query: 203 ACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK-KLKM 261
F+ N+ + +MV G +P+L Y ++ L + G D A + + M K K++
Sbjct: 189 GLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEA 248
Query: 262 DDASYKFMMKALSDGGKLDEILEI 285
D Y ++ L +D+ ++
Sbjct: 249 DVVIYNTIIDGLCKYKHMDDAFDL 272
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 84/197 (42%), Gaps = 6/197 (3%)
Query: 139 RFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYG 198
+ DAI +F M + R P + F+ L+ + K L +M + G++ + YTY
Sbjct: 55 KLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 114
Query: 199 LLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK 258
+ ++ +++ KM+ G P++ N L+ + EA + D MV+
Sbjct: 115 IFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEM 174
Query: 259 -LKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEF--VKGELSKEGRE 315
+ D ++ ++ L K E + +V ++ G +L + V L K G
Sbjct: 175 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGC---QPDLVTYGAVINGLCKRGEP 231
Query: 316 EEVVKLMEKKEREKAEA 332
+ + L+ K E+ K EA
Sbjct: 232 DLALNLLNKMEKGKIEA 248
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 149/309 (48%), Gaps = 16/309 (5%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEE 64
G D V Y+ ++ G R GD+ L +++E+ V +D Y +++ G +
Sbjct: 188 GCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEER--NVKADVFTYSTIIDSLCRDGCID 245
Query: 65 EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKF-DEALKLFDRMKNEHNPPKRLAVN 123
A+ + E E +K S V NS++ LC GK+ D AL L D + E P N
Sbjct: 246 AAISLFKEM--ETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVP------N 297
Query: 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183
+ +FNV+ D + +G+ ++A E++++M SP+ +++N L+D C L+EA +
Sbjct: 298 VITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLD 357
Query: 184 EMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG 243
M +PD T+ L+ V RVDDG FR + GL N Y+ LV Q G
Sbjct: 358 LMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSG 417
Query: 244 MLDEAKSFFDIMVKKLKMDDA-SYKFMMKALSDGGKLDEILEIVGGI----LDDGGIEFS 298
+ A+ F MV + D +Y ++ L D GKL++ LEI + +D G + ++
Sbjct: 418 KIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYT 477
Query: 299 EELQEFVKG 307
++ KG
Sbjct: 478 TIIEGMCKG 486
Score = 99.0 bits (245), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 81/324 (25%), Positives = 157/324 (48%), Gaps = 28/324 (8%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M + V + + ++ L+ FV++G L++E+ + G+ + + Y +LM GY M+
Sbjct: 289 MVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITR--GISPNIITYNTLMDGYCMQ 346
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKR- 119
EA + V S + V S++ C + D+ +K+F N KR
Sbjct: 347 NRLSEANNMLDLMVRNKCSPDI--VTFTSLIKGYCMVKRVDDGMKVF------RNISKRG 398
Query: 120 LAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAE 179
L N +++++ G+C G+ K A E+F++M + PD +++ L+D LC NG L +A
Sbjct: 399 LVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKAL 458
Query: 180 ELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKL 239
E++ ++ ++ Y +++ + +V+D F + G++PN+ Y ++ L
Sbjct: 459 EIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGL 518
Query: 240 VQVGMLDEAKSFFDIMVKKLKMD-----DASYKFMMKA-LSDG-----GKLDEILEIVGG 288
+ G L EA +I+++K++ D D +Y +++A L DG KL E ++ G
Sbjct: 519 CKKGSLSEA----NILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGF 574
Query: 289 ILDDGGIEFSEELQEFVKGELSKE 312
D I+ ++ + GEL K
Sbjct: 575 SADASSIKMVIDM--LLSGELDKS 596
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 94/195 (48%), Gaps = 6/195 (3%)
Query: 88 NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVF 147
N+++ L GK EA+ L DRM P ++ ++N + +G C G A+++
Sbjct: 162 NTLIKGLFLEGKVSEAVVLVDRMVENGCQP-----DVVTYNSIVNGICRSGDTSLALDLL 216
Query: 148 RKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEV 207
RKM E D +++ +ID LC++G + A L+ EM KG+ TY L+ +
Sbjct: 217 RKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKA 276
Query: 208 NRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-LKMDDASY 266
+ +DGA + MV + PN+ +N L+ V+ G L EA + M+ + + + +Y
Sbjct: 277 GKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITY 336
Query: 267 KFMMKALSDGGKLDE 281
+M +L E
Sbjct: 337 NTLMDGYCMQNRLSE 351
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 84/157 (53%), Gaps = 1/157 (0%)
Query: 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEM 185
+FN + G +G+ +A+ + +M E C PD +++N++++ +C++G + A +L +M
Sbjct: 160 TFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKM 219
Query: 186 SDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGML 245
++ V D +TY ++D+ +D + F++M G++ ++ YN LV L + G
Sbjct: 220 EERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKW 279
Query: 246 DEAKSFF-DIMVKKLKMDDASYKFMMKALSDGGKLDE 281
++ D++ +++ + ++ ++ GKL E
Sbjct: 280 NDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQE 316
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 93/203 (45%), Gaps = 10/203 (4%)
Query: 120 LAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAE 179
+A N+ + N+M + +C + A V K+ + PDT +FN LI L G ++EA
Sbjct: 119 IAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAV 178
Query: 180 ELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKL 239
L M + G PD TY +++ RKM + ++ ++ Y+ ++ L
Sbjct: 179 VLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSL 238
Query: 240 VQVGMLDEAKSFFDIM-VKKLKMDDASYKFMMKALSDGGKLDE----ILEIVGGILDDGG 294
+ G +D A S F M K +K +Y +++ L GK ++ + ++V +
Sbjct: 239 CRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNV 298
Query: 295 IEFSEELQEFVKGELSKEGREEE 317
I F+ L FV KEG+ +E
Sbjct: 299 ITFNVLLDVFV-----KEGKLQE 316
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 122 bits (306), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 86/320 (26%), Positives = 152/320 (47%), Gaps = 10/320 (3%)
Query: 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAM 67
AD V+++ ++ + D LF+E++ K G+ + V Y SL+ G +A
Sbjct: 258 ADVVIFNTIIDSLCKYRHVDDALNLFKEMETK--GIRPNVVTYSSLISCLCSYGRWSDAS 315
Query: 68 ECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSF 127
+ ++ + + + V N+++DA GKF EA KL+D M P ++ ++
Sbjct: 316 QLLSDMI--EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDP-----DIFTY 368
Query: 128 NVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSD 187
N + +G+C R A ++F M C PD +++N LI CK+ + + EL+ EMS
Sbjct: 369 NSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSH 428
Query: 188 KGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDE 247
+G+ D TY L+ F D+ F++MV G+ P++ Y+ L+ L G L++
Sbjct: 429 RGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEK 488
Query: 248 AKSFFDIMVK-KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVK 306
A FD M K ++K+D Y M++ + GK+D+ ++ + G +
Sbjct: 489 ALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMIS 548
Query: 307 GELSKEGREEEVVKLMEKKE 326
G SK +E L + KE
Sbjct: 549 GLCSKRLLQEAYALLKKMKE 568
Score = 92.4 bits (228), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 107/235 (45%), Gaps = 8/235 (3%)
Query: 48 VVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLF 107
V SL+ GY +A+ ++ V + + +++ L + K EA+ L
Sbjct: 156 VTLSSLLNGYCHGKRISDAVALVDQMV--EMGYRPDTITFTTLIHGLFLHNKASEAVALV 213
Query: 108 DRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLID 167
DRM P NL ++ V+ +G C +G A+ + KM + D + FN +ID
Sbjct: 214 DRMVQRGCQP-----NLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIID 268
Query: 168 QLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRP 227
LCK + +A L+ EM KG+ P+ TY L+ R D + M++ + P
Sbjct: 269 SLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINP 328
Query: 228 NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDE 281
NL +N L+ V+ G EA+ +D M+K+ + D +Y ++ +LD+
Sbjct: 329 NLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDK 383
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 110/230 (47%), Gaps = 11/230 (4%)
Query: 9 DPVVYSY--LMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEA 66
DP +++Y L+ GF D ++FE + K D V Y +L+KG+ E+
Sbjct: 362 DPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSK--DCFPDVVTYNTLIKGFCKSKRVEDG 419
Query: 67 MECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGS 126
E + E + + V +++ L ++G D A K+F +M ++ PP ++ +
Sbjct: 420 TELFREM--SHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPP-----DIMT 472
Query: 127 FNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMS 186
++++ DG C G+ + A+EVF M + D + +I+ +CK G + + +L+ +S
Sbjct: 473 YSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLS 532
Query: 187 DKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLV 236
KGV P+ TY ++ + + +KM + G PN YN L+
Sbjct: 533 LKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLI 582
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 95/197 (48%), Gaps = 9/197 (4%)
Query: 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME 63
+G V D V Y+ L+ G DGD D ++F+++ GV D + Y L+ G G
Sbjct: 429 RGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSD--GVPPDIMTYSILLDGLCNNGKL 486
Query: 64 EEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123
E+A+E ++ + S +K+ ++++ +C GK D+ LF + + P N
Sbjct: 487 EKALEVFDYM--QKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKP-----N 539
Query: 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183
+ ++N M G C + ++A + +KM E P++ ++N LI ++G A + EL
Sbjct: 540 VVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIR 599
Query: 184 EMSDKGVNPDEYTYGLL 200
EM D T GL+
Sbjct: 600 EMRSCRFVGDASTIGLV 616
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 97/206 (47%), Gaps = 10/206 (4%)
Query: 83 SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAV--NLGSFNVMADGYCGQGRF 140
S V N +L A+ KFD + L ++M+ RL + L ++N++ + +C + +
Sbjct: 84 SIVEFNKLLSAIAKMKKFDVVISLGEKMQ-------RLEIVHGLYTYNILINCFCRRSQI 136
Query: 141 KDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLL 200
A+ + KM + P ++ ++L++ C +++A L +M + G PD T+ L
Sbjct: 137 SLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTL 196
Query: 201 MDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIM-VKKL 259
+ F N+ + +MV G +PNL Y +V L + G D A + + M K+
Sbjct: 197 IHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKI 256
Query: 260 KMDDASYKFMMKALSDGGKLDEILEI 285
+ D + ++ +L +D+ L +
Sbjct: 257 EADVVIFNTIIDSLCKYRHVDDALNL 282
Score = 40.4 bits (93), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 66/184 (35%), Gaps = 36/184 (19%)
Query: 139 RFKDAIEVFRKMGEYRCSPDTLSFNN---------------------------------- 164
+ DAI +F M + R P + FN
Sbjct: 65 KLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYN 124
Query: 165 -LIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDS 223
LI+ C+ ++ A L G+M G P T L++ R+ D +MV+
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184
Query: 224 GLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDEI 282
G RP+ + L+ L EA + D MV++ + + +Y ++ L G D
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLA 244
Query: 283 LEIV 286
L ++
Sbjct: 245 LNLL 248
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 122 bits (306), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 125/250 (50%), Gaps = 9/250 (3%)
Query: 7 VADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEA 66
V D V +S +M F R G+ D F +KE G++ D V+Y L++GY KGM A
Sbjct: 372 VPDLVCFSSMMSLFTRSGNLDKALMYFNSVKE--AGLIPDNVIYTILIQGYCRKGMISVA 429
Query: 67 MECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGS 126
M NE + + + M V N++L LC EA KLF+ M P +
Sbjct: 430 MNLRNEMLQQGCA--MDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSY-----T 482
Query: 127 FNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMS 186
++ DG+C G ++A+E+F+KM E R D +++N L+D K G + A+E++ +M
Sbjct: 483 LTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMV 542
Query: 187 DKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLD 246
K + P +Y +L++A + + + +M+ ++P + + N ++ + G
Sbjct: 543 SKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNAS 602
Query: 247 EAKSFFDIMV 256
+ +SF + M+
Sbjct: 603 DGESFLEKMI 612
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 140/285 (49%), Gaps = 14/285 (4%)
Query: 4 KGFVADPVVYSY--LMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKG 61
KGF P VY+Y ++ G + G + +F E+ G+ D Y SL+ KG
Sbjct: 299 KGF--SPGVYTYNTVINGLCKHGKYERAKEVFAEMLR--SGLSPDSTTYRSLLMEACKKG 354
Query: 62 MEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLA 121
E + +++ + V V +S++ +G D+AL F+ +K P +
Sbjct: 355 DVVETEKVFSDM--RSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVI 412
Query: 122 VNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEEL 181
+ ++ GYC +G A+ + +M + C+ D +++N ++ LCK ML EA++L
Sbjct: 413 -----YTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKL 467
Query: 182 YGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQ 241
+ EM+++ + PD YT +L+D ++ + + F+KM + +R ++ YN L+ +
Sbjct: 468 FNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGK 527
Query: 242 VGMLDEAKSFF-DIMVKKLKMDDASYKFMMKALSDGGKLDEILEI 285
VG +D AK + D++ K++ SY ++ AL G L E +
Sbjct: 528 VGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRV 572
Score = 88.6 bits (218), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 121/257 (47%), Gaps = 11/257 (4%)
Query: 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME 63
+ D + L+ G + G+ LF+++KEK + D V Y +L+ G+ G
Sbjct: 474 RALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEK--RIRLDVVTYNTLLDGFGKVGDI 531
Query: 64 EEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123
+ A E + + V + + + ++ + +++ALC+ G EA +++D M +++ P + N
Sbjct: 532 DTAKEIWADMVSK--EILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICN 589
Query: 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183
M GYC G D KM PD +S+N LI + +++A L
Sbjct: 590 -----SMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVK 644
Query: 184 EMSDK--GVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQ 241
+M ++ G+ PD +TY ++ N++ + RKM++ G+ P+ + Y ++ V
Sbjct: 645 KMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVS 704
Query: 242 VGMLDEAKSFFDIMVKK 258
L EA D M+++
Sbjct: 705 QDNLTEAFRIHDEMLQR 721
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/327 (22%), Positives = 148/327 (45%), Gaps = 11/327 (3%)
Query: 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME 63
KGF + L+ VR G + + +++E+ G+ V ++M K +
Sbjct: 194 KGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGI---NVYTLNIMVNALCKDGK 250
Query: 64 EEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123
E + + V E V V N+++ A + G +EA +L + M P K +
Sbjct: 251 MEKVGTFLSQVQE-KGVYPDIVTYNTLISAYSSKGLMEEAFELMNAM-----PGKGFSPG 304
Query: 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183
+ ++N + +G C G+++ A EVF +M SPD+ ++ +L+ + CK G + E E+++
Sbjct: 305 VYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFS 364
Query: 184 EMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG 243
+M + V PD + +M +D YF + ++GL P+ +Y L+ + G
Sbjct: 365 DMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKG 424
Query: 244 MLDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQ 302
M+ A + + M+++ MD +Y ++ L L E ++ + + S L
Sbjct: 425 MISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLT 484
Query: 303 EFVKGELSKEGREEEVVKLMEKKEREK 329
+ G K G + ++L +K + ++
Sbjct: 485 ILIDGH-CKLGNLQNAMELFQKMKEKR 510
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 104/222 (46%), Gaps = 11/222 (4%)
Query: 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAME 68
D V Y+ L+ GF + GD D ++ ++ K ++ + Y L+ KG EA
Sbjct: 514 DVVTYNTLLDGFGKVGDIDTAKEIWADMVSK--EILPTPISYSILVNALCSKGHLAEAFR 571
Query: 69 CYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFN 128
++E + +N +K + + NS++ C +G + ++M +E P + S+N
Sbjct: 572 VWDEMISKN--IKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCI-----SYN 624
Query: 129 VMADGYCGQGRFKDAIEVFRKMGEYR--CSPDTLSFNNLIDQLCKNGMLAEAEELYGEMS 186
+ G+ + A + +KM E + PD ++N+++ C+ + EAE + +M
Sbjct: 625 TLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMI 684
Query: 187 DKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPN 228
++GVNPD TY +++ + + + +M+ G P+
Sbjct: 685 ERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPD 726
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 40/66 (60%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M +GFV D + Y+ L+ GFVR+ + F L ++++E+ GG+V D Y S++ G+ +
Sbjct: 611 MISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQ 670
Query: 61 GMEEEA 66
+EA
Sbjct: 671 NQMKEA 676
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 83/212 (39%), Gaps = 23/212 (10%)
Query: 126 SFNVMADGYCGQGRFKDA----IEVFRKMGEYR-------------CSPDTLSFNNLIDQ 168
S + M GR DA + + R+ G R C + F+ LI
Sbjct: 115 SLSAMIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSNDSVFDLLIRT 174
Query: 169 LCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPN 228
+ L EA E + + KG L+ + + V+ ++++ SG+ N
Sbjct: 175 YVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGIN 234
Query: 229 LAVYNRLVGKLVQVGMLDEAKSFF-DIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVG 287
+ N +V L + G +++ +F + K + D +Y ++ A S G ++E E++
Sbjct: 235 VYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMN 294
Query: 288 GILDDGGIEFSEELQEF--VKGELSKEGREEE 317
+ G FS + + V L K G+ E
Sbjct: 295 AMPGKG---FSPGVYTYNTVINGLCKHGKYER 323
>sp|Q9SV46|PP282_ARATH Pentatricopeptide repeat-containing protein At3g54980,
mitochondrial OS=Arabidopsis thaliana GN=At3g54980 PE=2
SV=1
Length = 851
Score = 121 bits (304), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 162/325 (49%), Gaps = 10/325 (3%)
Query: 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME 63
+G + V Y+ +MLG R + D +F + EK G+ + Y L+ G F E
Sbjct: 472 RGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEK--GLKPNNYTYSILIDGCFRNHDE 529
Query: 64 EEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123
+ A+E N N ++++ V ++++ LC G+ +A +L M E KRL V+
Sbjct: 530 QNALEVVNHMTSSN--IEVNGVVYQTIINGLCKVGQTSKARELLANMIEE----KRLCVS 583
Query: 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183
S+N + DG+ +G A+ + +M SP+ +++ +L++ LCKN + +A E+
Sbjct: 584 CMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRD 643
Query: 184 EMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG 243
EM +KGV D YG L+D + + ++ + F ++++ GL P+ +YN L+ +G
Sbjct: 644 EMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLG 703
Query: 244 MLDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQ 302
+ A + M+K L+ D +Y ++ L G L E+ + G+ E +
Sbjct: 704 NMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLILASELYTE-MQAVGLVPDEIIY 762
Query: 303 EFVKGELSKEGREEEVVKLMEKKER 327
+ LSK+G+ +VVK+ E+ ++
Sbjct: 763 TVIVNGLSKKGQFVKVVKMFEEMKK 787
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 128/262 (48%), Gaps = 16/262 (6%)
Query: 13 YSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNE 72
Y+ ++ GF ++G+ D +EE+ G+ + + Y SLM G ++A+E +E
Sbjct: 587 YNSIIDGFFKEGEMDSAVAAYEEMCG--NGISPNVITYTSLMNGLCKNNRMDQALEMRDE 644
Query: 73 AVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNE-HNPPKRLAVNLGSFNVMA 131
+N VK+ A +++D C + A LF + E NP + + +N +
Sbjct: 645 M--KNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQPI------YNSLI 696
Query: 132 DGYCGQGRFKDAIEVFRKMGE--YRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKG 189
G+ G A+++++KM + RC D ++ LID L K+G L A ELY EM G
Sbjct: 697 SGFRNLGNMVAALDLYKKMLKDGLRC--DLGTYTTLIDGLLKDGNLILASELYTEMQAVG 754
Query: 190 VNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAK 249
+ PDE Y ++++ + + F +M + + PN+ +YN ++ + G LDEA
Sbjct: 755 LVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAF 814
Query: 250 SFFDIMVKK-LKMDDASYKFMM 270
D M+ K + D A++ ++
Sbjct: 815 RLHDEMLDKGILPDGATFDILV 836
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 128/284 (45%), Gaps = 16/284 (5%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M G + V + L+ G ++ D LF++++++ G + V + L++ +
Sbjct: 330 MLSDGISMNVVAATSLITGHCKNNDLVSALVLFDKMEKE--GPSPNSVTFSVLIEWFRKN 387
Query: 61 GMEEEAMECYN--EAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPK 118
G E+A+E Y E +G SV ++++ K +EALKLFD
Sbjct: 388 GEMEKALEFYKKMEVLGLTPSV----FHVHTIIQGWLKGQKHEEALKLFDESFETG---- 439
Query: 119 RLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEA 178
N+ N + C QG+ +A E+ KM P+ +S+NN++ C+ + A
Sbjct: 440 --LANVFVCNTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLA 497
Query: 179 EELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGK 238
++ + +KG+ P+ YTY +L+D CF + + M S + N VY ++
Sbjct: 498 RIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIING 557
Query: 239 LVQVGMLDEAKSFFDIMV--KKLKMDDASYKFMMKALSDGGKLD 280
L +VG +A+ M+ K+L + SY ++ G++D
Sbjct: 558 LCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMD 601
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 111/246 (45%), Gaps = 11/246 (4%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEE 64
G + + Y+ LM G ++ D + +E+K K GV D YG+L+ G+ + E
Sbjct: 614 GISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNK--GVKLDIPAYGALIDGFCKRSNME 671
Query: 65 EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124
A ++E + E + S NS++ N G AL L+ +M + L +L
Sbjct: 672 SASALFSELLEE--GLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDG-----LRCDL 724
Query: 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGE 184
G++ + DG G A E++ +M PD + + +++ L K G + +++ E
Sbjct: 725 GTYTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEE 784
Query: 185 MSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244
M V P+ Y ++ + +D+ +M+D G+ P+ A ++ LV QVG
Sbjct: 785 MKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDILVSG--QVGN 842
Query: 245 LDEAKS 250
L ++
Sbjct: 843 LQPVRA 848
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 2/174 (1%)
Query: 122 VNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEEL 181
VN +FN + + Y + A+++ +M E P N + L + L EA+EL
Sbjct: 161 VNSRAFNYLLNAYSKDRQTDHAVDIVNQMLELDVIPFFPYVNRTLSALVQRNSLTEAKEL 220
Query: 182 YGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQ 241
Y M GV+ D T LLM A + + + ++ G P+ +Y+ V +
Sbjct: 221 YSRMVAIGVDGDNVTTQLLMRASLREEKPAEALEVLSRAIERGAEPDSLLYSLAVQACCK 280
Query: 242 VGMLDEAKSFFDIMV-KKLKMDDA-SYKFMMKALSDGGKLDEILEIVGGILDDG 293
L A S M KKL + +Y ++ A G +D+ + + +L DG
Sbjct: 281 TLDLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMDDAIRLKDEMLSDG 334
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 105/249 (42%), Gaps = 12/249 (4%)
Query: 42 GVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAV--GENSSVKMSAVANNSVLDALCNNGK 99
GV D V LM+ + EA+E + A+ G + ++A + A C
Sbjct: 228 GVDGDNVTTQLLMRASLREEKPAEALEVLSRAIERGAEPDSLLYSLA----VQACCKTLD 283
Query: 100 FDEALKLFDRMKNEHNPPKRLAV-NLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD 158
A L MK K+L V + ++ + QG DAI + +M S +
Sbjct: 284 LAMANSLLREMKE-----KKLCVPSQETYTSVILASVKQGNMDDAIRLKDEMLSDGISMN 338
Query: 159 TLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFR 218
++ +LI CKN L A L+ +M +G +P+ T+ +L++ + ++ +++
Sbjct: 339 VVAATSLITGHCKNNDLVSALVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYK 398
Query: 219 KMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGK 278
KM GL P++ + ++ ++ +EA FD + + ++ L GK
Sbjct: 399 KMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDESFETGLANVFVCNTILSWLCKQGK 458
Query: 279 LDEILEIVG 287
DE E++
Sbjct: 459 TDEATELLS 467
Score = 32.7 bits (73), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Query: 190 VNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAK 249
VN + Y L++A + + D +M++ + P NR + LVQ L EAK
Sbjct: 161 VNSRAFNY--LLNAYSKDRQTDHAVDIVNQMLELDVIPFFPYVNRTLSALVQRNSLTEAK 218
Query: 250 SFFDIMVKK-LKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGG 294
+ MV + D+ + + +M+A K E LE++ ++ G
Sbjct: 219 ELYSRMVAIGVDGDNVTTQLLMRASLREEKPAEALEVLSRAIERGA 264
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 153/324 (47%), Gaps = 11/324 (3%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEE 64
G D V Y+ ++ GF ++GDSD + + E+ ++ G++ D V Y S++ +
Sbjct: 191 GSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDR--GILPDVVTYNSIIAALCKAQAMD 248
Query: 65 EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124
+AME N V + V + NS+L C++G+ EA+ +M+++ P ++
Sbjct: 249 KAMEVLNTMV--KNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEP-----DV 301
Query: 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGE 184
+++++ D C GR +A ++F M + P+ ++ L+ G L E L
Sbjct: 302 VTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDL 361
Query: 185 MSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244
M G++PD Y + +L+ A + +VD F KM GL PN Y ++G L + G
Sbjct: 362 MVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGR 421
Query: 245 LDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQE 303
+++A +F+ M+ + L + Y ++ L K + E++ +LD GI +
Sbjct: 422 VEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDR-GICLNTIFFN 480
Query: 304 FVKGELSKEGREEEVVKLMEKKER 327
+ KEGR E KL E R
Sbjct: 481 SIIDSHCKEGRVIESEKLFELMVR 504
Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/315 (23%), Positives = 146/315 (46%), Gaps = 41/315 (13%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M G D V+S L+ + + G D +F +++++ G+ + V YG+++
Sbjct: 362 MVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQ--GLNPNAVTYGAVIGILCKS 419
Query: 61 GMEEEAMECYNEAVGENSS---------------------------------VKMSAVAN 87
G E+AM + + + E S + ++ +
Sbjct: 420 GRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFF 479
Query: 88 NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVF 147
NS++D+ C G+ E+ KLF+ M P N+ ++N + +GYC G+ +A+++
Sbjct: 480 NSIIDSHCKEGRVIESEKLFELMVRIGVKP-----NVITYNTLINGYCLAGKMDEAMKLL 534
Query: 148 RKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEV 207
M P+T++++ LI+ CK + +A L+ EM GV+PD TY +++ F+
Sbjct: 535 SGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQT 594
Query: 208 NRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFF-DIMVKKLKMDDASY 266
R + ++ +SG + L+ YN ++ L + + D+A F ++ + LK++ ++
Sbjct: 595 RRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTF 654
Query: 267 KFMMKALSDGGKLDE 281
M+ AL G+ DE
Sbjct: 655 NIMIDALLKVGRNDE 669
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 6/208 (2%)
Query: 126 SFNVMADGYCGQGRFKDAIE-VFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGE 184
+F + G C R DA++ V R+M E C P+ S+N L+ LC EA EL
Sbjct: 124 AFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHM 183
Query: 185 MSDK---GVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQ 241
M+D G PD +Y +++ F+ D + + +M+D G+ P++ YN ++ L +
Sbjct: 184 MADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCK 243
Query: 242 VGMLDEAKSFFDIMVKKLKMDDA-SYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEE 300
+D+A + MVK M D +Y ++ G+ E + + + D G+E
Sbjct: 244 AQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSD-GVEPDVV 302
Query: 301 LQEFVKGELSKEGREEEVVKLMEKKERE 328
+ L K GR E K+ + +
Sbjct: 303 TYSLLMDYLCKNGRCMEARKIFDSMTKR 330
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 127/282 (45%), Gaps = 19/282 (6%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDG-----VVYGSLMKGYFM 59
G + + Y+ L+ G+ G D +L L G+VS G V Y +L+ GY
Sbjct: 506 GVKPNVITYNTLINGYCLAGKMDEAMKL-------LSGMVSVGLKPNTVTYSTLINGYCK 558
Query: 60 KGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKR 119
E+A+ + E E+S V + N +L L + A +L+ R+
Sbjct: 559 ISRMEDALVLFKEM--ESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGT---- 612
Query: 120 LAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAE 179
+ L ++N++ G C DA+++F+ + + +FN +ID L K G EA+
Sbjct: 613 -QIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAK 671
Query: 180 ELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKL 239
+L+ S G+ P+ +TY L+ + +++ F M D+G + + N +V +L
Sbjct: 672 DLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVREL 731
Query: 240 VQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDE 281
+Q G + A ++ ++ +K +AS + L GGK E
Sbjct: 732 LQRGEITRAGTYLSMIDEKHFSLEASTASLFIDLLSGGKYQE 773
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 11/127 (8%)
Query: 176 AEAEELYGEMSDKG---VNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVY 232
A A Y M+ G V PD TYG+L+ C R+D G ++ G R + +
Sbjct: 66 AAAVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAF 125
Query: 233 NRLVGKLVQVGMLDEAKSFFDIMVKKLK-----MDDASYKFMMKALSDGGKLDEILEIVG 287
L+ L +A DI+++++ + SY ++K L D + E LE++
Sbjct: 126 TPLLKGLCADKRTSDA---MDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLH 182
Query: 288 GILDDGG 294
+ DD G
Sbjct: 183 MMADDRG 189
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 149/329 (45%), Gaps = 11/329 (3%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEE 64
G+ D ++ L+ G R + L + + K G D V YG ++ G +G +
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVK--GCQPDLVTYGIVVNGLCKRGDID 238
Query: 65 EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124
A+ + E ++ V N+++DALCN ++AL LF M N+ P N+
Sbjct: 239 LALSLLKKM--EQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRP-----NV 291
Query: 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGE 184
++N + C GR+ DA + M E + +P+ ++F+ LID K G L EAE+LY E
Sbjct: 292 VTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDE 351
Query: 185 MSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244
M + ++PD +TY L++ +R+D+ F M+ PN+ YN L+ +
Sbjct: 352 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 411
Query: 245 LDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQE 303
+DE F M ++ L + +Y ++ + D + ++ DG +
Sbjct: 412 VDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSI 471
Query: 304 FVKGELSKEGREEEVVKLMEKKEREKAEA 332
+ G L G+ E + + E +R K E
Sbjct: 472 LLDG-LCNNGKVETALVVFEYLQRSKMEP 499
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 116/242 (47%), Gaps = 7/242 (2%)
Query: 83 SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKD 142
S V + +L A+ KFD + L ++M+N ++ NL +++++ + +C + +
Sbjct: 80 SIVEFSKLLSAIAKMNKFDLVISLGEQMQNLG-----ISHNLYTYSILINCFCRRSQLSL 134
Query: 143 AIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMD 202
A+ V KM + PD ++ N+L++ C +++A L G+M + G PD +T+ L+
Sbjct: 135 ALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIH 194
Query: 203 ACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK-KLKM 261
F NR + +MV G +P+L Y +V L + G +D A S M + K++
Sbjct: 195 GLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEP 254
Query: 262 DDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKL 321
Y ++ AL + +++ L + +D+ GI + + L GR + +L
Sbjct: 255 GVVIYNTIIDALCNYKNVNDALNLFTE-MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRL 313
Query: 322 ME 323
+
Sbjct: 314 LS 315
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 116/253 (45%), Gaps = 15/253 (5%)
Query: 76 ENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYC 135
+N + + + +++ C + AL + +M P ++ + N + +G+C
Sbjct: 108 QNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEP-----DIVTLNSLLNGFC 162
Query: 136 GQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEY 195
R DA+ + +M E PD+ +FN LI L ++ +EA L M KG PD
Sbjct: 163 HGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLV 222
Query: 196 TYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIM 255
TYG++++ + +D + +KM + P + +YN ++ L +++A + F M
Sbjct: 223 TYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEM 282
Query: 256 VKK-LKMDDASYKFMMKALSDGGKLDEILEIVGGI----LDDGGIEFSEELQEFVKGELS 310
K ++ + +Y +++ L + G+ + ++ + ++ + FS + FV
Sbjct: 283 DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFV----- 337
Query: 311 KEGREEEVVKLME 323
KEG+ E KL +
Sbjct: 338 KEGKLVEAEKLYD 350
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 108/230 (46%), Gaps = 11/230 (4%)
Query: 9 DPVVYSY--LMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEA 66
DP +++Y L+ GF D +FE + K + V Y +L+KG+ +E
Sbjct: 358 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISK--DCFPNVVTYNTLIKGFCKAKRVDEG 415
Query: 67 MECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGS 126
ME + E + + V +++ + D A +F +M ++ P ++ +
Sbjct: 416 MELFREM--SQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLP-----DIMT 468
Query: 127 FNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMS 186
++++ DG C G+ + A+ VF + + PD ++N +I+ +CK G + + +L+ +S
Sbjct: 469 YSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLS 528
Query: 187 DKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLV 236
KGV P+ TY +M ++ FR+M + G P+ YN L+
Sbjct: 529 LKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLI 578
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 78/195 (40%), Gaps = 39/195 (20%)
Query: 139 RFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYG 198
+ DA+ +F M + R P + F+ L+ + K L +M + G++ + YTY
Sbjct: 61 KLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 120
Query: 199 LLMDACF------------------------------------EVNRVDDGATYFRKMVD 222
+L++ CF NR+ D + +MV+
Sbjct: 121 ILIN-CFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVE 179
Query: 223 SGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDE 281
G +P+ +N L+ L + EA + D MV K + D +Y ++ L G +D
Sbjct: 180 MGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDL 239
Query: 282 ILEIVGGILDDGGIE 296
L ++ ++ G IE
Sbjct: 240 ALSLLKK-MEQGKIE 253
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 120 bits (300), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 142/317 (44%), Gaps = 45/317 (14%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEE 64
G+ D ++ L+ G + L +++ ++ G D V YG+++ G +G +
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQR--GCQPDLVTYGTVVNGLCKRGDID 240
Query: 65 EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124
A+ N+ E + +K + V N+++D+LC + A+ LF M+ + P N+
Sbjct: 241 LALNLLNKM--EAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRP-----NV 293
Query: 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGE 184
++N + + C GR+ DA + M E + +P+ ++FN LID K G L EAE+L+ E
Sbjct: 294 VTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEE 353
Query: 185 MSDKGVNPDEYTYGLLMDA---------------------CF--------------EVNR 209
M + ++PD TY LL++ C + R
Sbjct: 354 MIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKR 413
Query: 210 VDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK-KLKMDDASYKF 268
V+DG FR+M GL N Y ++ Q G D A+ F MV ++ D +Y
Sbjct: 414 VEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSI 473
Query: 269 MMKALSDGGKLDEILEI 285
++ L GKLD L I
Sbjct: 474 LLHGLCSYGKLDTALVI 490
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/316 (21%), Positives = 141/316 (44%), Gaps = 35/316 (11%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M +G D V Y ++ G + GD D L +++ + ++ V++ +++
Sbjct: 214 MVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEA--ARIKANVVIFNTIIDSLCKY 271
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
E A++ + E E ++ + V NS+++ LCN G++ +A +L M + P +
Sbjct: 272 RHVEVAVDLFTEM--ETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVV 329
Query: 121 AVN------------------------------LGSFNVMADGYCGQGRFKDAIEVFRKM 150
N ++N++ +G+C R +A ++F+ M
Sbjct: 330 TFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFM 389
Query: 151 GEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRV 210
C P+ ++N LI+ CK + + EL+ EMS +G+ + TY ++ F+
Sbjct: 390 VSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDC 449
Query: 211 DDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK-KLKMDDASYKFM 269
D F++MV + + ++ Y+ L+ L G LD A F + K +++++ Y M
Sbjct: 450 DSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTM 509
Query: 270 MKALSDGGKLDEILEI 285
++ + GK+ E ++
Sbjct: 510 IEGMCKAGKVGEAWDL 525
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/325 (22%), Positives = 145/325 (44%), Gaps = 13/325 (4%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M KG + V Y+ L+ G RL + EK + + V + +L+ +F +
Sbjct: 284 METKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEK--KINPNVVTFNALIDAFFKE 341
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
G EA + + E + S+ + N +++ C + + DEA ++F M ++ P
Sbjct: 342 GKLVEAEKLHEEMI--QRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLP--- 396
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
N+ ++N + +G+C R +D +E+FR+M + +T+++ +I + G A+
Sbjct: 397 --NIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQM 454
Query: 181 LYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240
++ +M V D TY +L+ ++D F+ + S + N+ +YN ++ +
Sbjct: 455 VFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMC 514
Query: 241 QVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEE 300
+ G + EA F + +K D +Y M+ L L E ++ + +DG + S
Sbjct: 515 KAGKVGEAWDLFCSL--SIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGT 572
Query: 301 LQEFVKGELSKEGR--EEEVVKLME 323
++ L R E++K M
Sbjct: 573 YNTLIRANLRDCDRAASAELIKEMR 597
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 105/238 (44%), Gaps = 15/238 (6%)
Query: 91 LDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKM 150
++ C + AL + +M P ++ + + + +GYC R DA+ + +M
Sbjct: 125 INCFCRRSQLSLALAVLAKMMKLGYEP-----DIVTLSSLLNGYCHSKRISDAVALVDQM 179
Query: 151 GEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRV 210
E PDT +F LI L + +EA L +M +G PD TYG +++ + +
Sbjct: 180 VEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDI 239
Query: 211 DDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIM-VKKLKMDDASYKFM 269
D KM + ++ N+ ++N ++ L + ++ A F M K ++ + +Y +
Sbjct: 240 DLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSL 299
Query: 270 MKALSDGGKLDEILEIVGGIL----DDGGIEFSEELQEFVKGELSKEGREEEVVKLME 323
+ L + G+ + ++ +L + + F+ + F KEG+ E KL E
Sbjct: 300 INCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFF-----KEGKLVEAEKLHE 352
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 86/173 (49%), Gaps = 5/173 (2%)
Query: 83 SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKD 142
S V N +L A+ KF+ + L ++M+ ++ +L ++++ + +C + +
Sbjct: 82 SIVEFNKLLSAVAKMNKFELVISLGEQMQTLG-----ISHDLYTYSIFINCFCRRSQLSL 136
Query: 143 AIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMD 202
A+ V KM + PD ++ ++L++ C + +++A L +M + G PD +T+ L+
Sbjct: 137 ALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIH 196
Query: 203 ACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIM 255
F N+ + +MV G +P+L Y +V L + G +D A + + M
Sbjct: 197 GLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKM 249
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 95/199 (47%), Gaps = 12/199 (6%)
Query: 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME 63
+G V + V Y+ ++ GF + GD D +F+++ V +D + Y L+ G G
Sbjct: 427 RGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVS--NRVPTDIMTYSILLHGLCSYGKL 484
Query: 64 EEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123
+ A+ + + S ++++ N++++ +C GK EA LF + + +
Sbjct: 485 DTALVIFKYL--QKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLS--------IKPD 534
Query: 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183
+ ++N M G C + ++A ++FRKM E P++ ++N LI ++ A + EL
Sbjct: 535 VVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIK 594
Query: 184 EMSDKGVNPDEYTYGLLMD 202
EM G D T L+ +
Sbjct: 595 EMRSSGFVGDASTISLVTN 613
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 79/189 (41%), Gaps = 6/189 (3%)
Query: 99 KFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD 158
K D+A+ LF M P ++ FN + +F+ I + +M S D
Sbjct: 63 KVDDAVDLFGDMVKSRPFP-----SIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHD 117
Query: 159 TLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFR 218
+++ I+ C+ L+ A + +M G PD T L++ R+ D
Sbjct: 118 LYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVD 177
Query: 219 KMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGG 277
+MV+ G +P+ + L+ L EA + D MV++ + D +Y ++ L G
Sbjct: 178 QMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRG 237
Query: 278 KLDEILEIV 286
+D L ++
Sbjct: 238 DIDLALNLL 246
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/332 (25%), Positives = 154/332 (46%), Gaps = 11/332 (3%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
MFV + + V ++ L+ G + L + + + G D YG+++ G +
Sbjct: 176 MFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAR--GCQPDLFTYGTVVNGLCKR 233
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
G + A+ + E ++ V +++DALCN ++AL LF M N+ P
Sbjct: 234 GDIDLALSLLKKM--EKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRP--- 288
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
N+ ++N + C GR+ DA + M E + +P+ ++F+ LID K G L EAE+
Sbjct: 289 --NVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEK 346
Query: 181 LYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240
LY EM + ++PD +TY L++ +R+D+ F M+ PN+ YN L+
Sbjct: 347 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFC 406
Query: 241 QVGMLDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSE 299
+ ++E F M ++ L + +Y +++ L G D +I ++ DG
Sbjct: 407 KAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDII 466
Query: 300 ELQEFVKGELSKEGREEEVVKLMEKKEREKAE 331
+ G L K G+ E+ + + E ++ K E
Sbjct: 467 TYSILLDG-LCKYGKLEKALVVFEYLQKSKME 497
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 135/270 (50%), Gaps = 11/270 (4%)
Query: 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECY 70
V +S L+ FV++G +L++E+ ++ + D Y SL+ G+ M +EA +
Sbjct: 326 VTFSALIDAFVKEGKLVEAEKLYDEMIKR--SIDPDIFTYSSLINGFCMHDRLDEAKHMF 383
Query: 71 NEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVM 130
+ ++ + V N+++ C + +E ++LF M + L N ++N +
Sbjct: 384 ELMISKDCFP--NVVTYNTLIKGFCKAKRVEEGMELFREMSQ-----RGLVGNTVTYNTL 436
Query: 131 ADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGV 190
G G A ++F+KM PD ++++ L+D LCK G L +A ++ + +
Sbjct: 437 IQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKM 496
Query: 191 NPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKS 250
PD YTY ++++ + +V+DG F + G++PN+ +Y ++ + G+ +EA +
Sbjct: 497 EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADA 556
Query: 251 FFDIMVKKLKMDDA-SYKFMMKA-LSDGGK 278
F M + + ++ +Y +++A L DG K
Sbjct: 557 LFREMKEDGTLPNSGTYNTLIRARLRDGDK 586
Score = 81.6 bits (200), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 123/260 (47%), Gaps = 9/260 (3%)
Query: 64 EEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123
++A++ + E V S S V N +L A+ KFD + L +RM+N R++ +
Sbjct: 62 DDAVDLFGEMV--QSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQN-----LRISYD 114
Query: 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183
L S+N++ + +C + + A+ V KM + PD ++ ++L++ C ++EA L
Sbjct: 115 LYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVD 174
Query: 184 EMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG 243
+M P+ T+ L+ F N+ + +MV G +P+L Y +V L + G
Sbjct: 175 QMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRG 234
Query: 244 MLDEAKSFFDIMVK-KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQ 302
+D A S M K K++ D Y ++ AL + +++ L + +D+ GI +
Sbjct: 235 DIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTE-MDNKGIRPNVVTY 293
Query: 303 EFVKGELSKEGREEEVVKLM 322
+ L GR + +L+
Sbjct: 294 NSLIRCLCNYGRWSDASRLL 313
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 97/242 (40%), Gaps = 41/242 (16%)
Query: 76 ENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYC 135
+N + + N +++ C + AL + +M P ++ + + + +GYC
Sbjct: 107 QNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEP-----DIVTLSSLLNGYC 161
Query: 136 GQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEY 195
R +A+ + +M P+T++FN LI L + +EA L M +G PD +
Sbjct: 162 HGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLF 221
Query: 196 TYG-----------------------------------LLMDACFEVNRVDDGATYFRKM 220
TYG ++DA V+D F +M
Sbjct: 222 TYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEM 281
Query: 221 VDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFF-DIMVKKLKMDDASYKFMMKALSDGGKL 279
+ G+RPN+ YN L+ L G +A D++ +K+ + ++ ++ A GKL
Sbjct: 282 DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 341
Query: 280 DE 281
E
Sbjct: 342 VE 343
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 98/210 (46%), Gaps = 15/210 (7%)
Query: 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME 63
+G V + V Y+ L+ G + GD D ++F+++ GV D + Y L+ G G
Sbjct: 424 RGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSD--GVPPDIITYSILLDGLCKYGKL 481
Query: 64 EEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123
E+A+ + + S ++ N +++ +C GK ++ LF + + P N
Sbjct: 482 EKALVVFEYL--QKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKP-----N 534
Query: 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183
+ + M G+C +G ++A +FR+M E P++ ++N LI ++G A + EL
Sbjct: 535 VIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIK 594
Query: 184 EMSDKGVNPDEYTYGLLMDACFEVNRVDDG 213
EM G D T ++ +N + DG
Sbjct: 595 EMRSCGFVGDASTISMV------INMLHDG 618
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 84/195 (43%), Gaps = 2/195 (1%)
Query: 139 RFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYG 198
+ DA+++F +M + R P + FN L+ + K L M + ++ D Y+Y
Sbjct: 60 KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYN 119
Query: 199 LLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIM-VK 257
+L++ +++ KM+ G P++ + L+ + EA + D M V
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVM 179
Query: 258 KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEE 317
+ + + ++ ++ L K E + ++ ++ G V G L K G +
Sbjct: 180 EYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNG-LCKRGDIDL 238
Query: 318 VVKLMEKKEREKAEA 332
+ L++K E+ K EA
Sbjct: 239 ALSLLKKMEKGKIEA 253
>sp|O80958|PP194_ARATH Pentatricopeptide repeat-containing protein At2g39230,
mitochondrial OS=Arabidopsis thaliana GN=LOJ PE=1 SV=1
Length = 867
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/326 (26%), Positives = 161/326 (49%), Gaps = 10/326 (3%)
Query: 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME 63
KG + V Y+ +ML R + D +F E+ EK G+ + Y L+ G+F E
Sbjct: 478 KGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEK--GLEPNNFTYSILIDGFFKNKDE 535
Query: 64 EEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123
+ A + N+ N + + V N++++ LC G+ +A ++ + E KR +++
Sbjct: 536 QNAWDVINQMNASN--FEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKE----KRYSMS 589
Query: 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183
S+N + DG+ G A+E +R+M E SP+ ++F +LI+ CK+ + A E+
Sbjct: 590 CTSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSLINGFCKSNRMDLALEMTH 649
Query: 184 EMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG 243
EM + D YG L+D + N + T F ++ + GL PN++VYN L+ +G
Sbjct: 650 EMKSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNSLISGFRNLG 709
Query: 244 MLDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQ 302
+D A + MV + D +Y M+ L G ++ ++ +LD G + E L
Sbjct: 710 KMDAAIDLYKKMVNDGISCDLFTYTTMIDGLLKDGNINLASDLYSELLDLGIVP-DEILH 768
Query: 303 EFVKGELSKEGREEEVVKLMEKKERE 328
+ LSK+G+ + K++E+ +++
Sbjct: 769 MVLVNGLSKKGQFLKASKMLEEMKKK 794
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 125/259 (48%), Gaps = 10/259 (3%)
Query: 13 YSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNE 72
Y+ ++ GFV+ GD+D + E+ E G + V + SL+ G+ + A+E +E
Sbjct: 593 YNSIIDGFVKVGDTDSAVETYREMSE--NGKSPNVVTFTSLINGFCKSNRMDLALEMTHE 650
Query: 73 AVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMAD 132
++ +K+ A +++D C A LF + P L N+ +N +
Sbjct: 651 M--KSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSEL-----PELGLMPNVSVYNSLIS 703
Query: 133 GYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNP 192
G+ G+ AI++++KM S D ++ +ID L K+G + A +LY E+ D G+ P
Sbjct: 704 GFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLLKDGNINLASDLYSELLDLGIVP 763
Query: 193 DEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFF 252
DE + +L++ + + + +M + PN+ +Y+ ++ + G L+EA
Sbjct: 764 DEILHMVLVNGLSKKGQFLKASKMLEEMKKKDVTPNVLLYSTVIAGHHREGNLNEAFRLH 823
Query: 253 DIMVKK-LKMDDASYKFMM 270
D M++K + DD + ++
Sbjct: 824 DEMLEKGIVHDDTVFNLLV 842
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 124/280 (44%), Gaps = 9/280 (3%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M KG + YS L+ GF ++ D + + ++ ++ V+Y +++ G
Sbjct: 510 MLEKGLEPNNFTYSILIDGFFKNKDEQNAWDVINQMNA--SNFEANEVIYNTIINGLCKV 567
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
G +A E + E MS + NS++D G D A++ + M P
Sbjct: 568 GQTSKAKEMLQNLIKE-KRYSMSCTSYNSIIDGFVKVGDTDSAVETYREMSENGKSP--- 623
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
N+ +F + +G+C R A+E+ +M D ++ LID CK + A
Sbjct: 624 --NVVTFTSLINGFCKSNRMDLALEMTHEMKSMELKLDLPAYGALIDGFCKKNDMKTAYT 681
Query: 181 LYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240
L+ E+ + G+ P+ Y L+ + ++D ++KMV+ G+ +L Y ++ L+
Sbjct: 682 LFSELPELGLMPNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLL 741
Query: 241 QVGMLDEAKSFF-DIMVKKLKMDDASYKFMMKALSDGGKL 279
+ G ++ A + +++ + D+ + ++ LS G+
Sbjct: 742 KDGNINLASDLYSELLDLGIVPDEILHMVLVNGLSKKGQF 781
Score = 78.6 bits (192), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 75/340 (22%), Positives = 148/340 (43%), Gaps = 43/340 (12%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLG-GVVSDGVVYGSLMKGYFMKGME 63
G A Y+ +++ FV++G+ + R+ +E+ +G G+ + SL+ GY KG E
Sbjct: 305 GVPASQETYTSVIVAFVKEGNMEEAVRVMDEM---VGFGIPMSVIAATSLVNGY-CKGNE 360
Query: 64 E-EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAV 122
+A++ +N E + V + +++ C N + ++A++ + RMK+ P + V
Sbjct: 361 LGKALDLFNRM--EEEGLAPDKVMFSVMVEWFCKNMEMEKAIEFYMRMKSVRIAPSSVLV 418
Query: 123 N---------------LGSFN-----VMADGY---------CGQGRFKDAIEVFRKMGEY 153
+ L FN +A G+ C QG+ A + M +
Sbjct: 419 HTMIQGCLKAESPEAALEIFNDSFESWIAHGFMCNKIFLLFCKQGKVDAATSFLKMMEQK 478
Query: 154 RCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDG 213
P+ + +NN++ C+ + A ++ EM +KG+ P+ +TY +L+D F+ +
Sbjct: 479 GIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLEPNNFTYSILIDGFFKNKDEQNA 538
Query: 214 ATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMV--KKLKMDDASYKFMMK 271
+M S N +YN ++ L +VG +AK ++ K+ M SY ++
Sbjct: 539 WDVINQMNASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMSCTSYNSIID 598
Query: 272 ALSDGGKLDEILEIVGGILDDGG----IEFSEELQEFVKG 307
G D +E + ++G + F+ + F K
Sbjct: 599 GFVKVGDTDSAVETYREMSENGKSPNVVTFTSLINGFCKS 638
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%)
Query: 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEM 185
+FN + + Y R A++ F M + + P NN++ L ++ ++ EA+E+Y +M
Sbjct: 171 AFNYLLNAYIRNKRMDYAVDCFGLMVDRKVVPFVPYVNNVLSSLVRSNLIDEAKEIYNKM 230
Query: 186 SDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPN 228
GV D T LLM A + ++ FR+++ G P+
Sbjct: 231 VLIGVAGDNVTTQLLMRASLRERKPEEAVKIFRRVMSRGAEPD 273
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/268 (16%), Positives = 110/268 (41%), Gaps = 45/268 (16%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEE 64
GF P ++YL+ ++R+ D F + ++ VV +++ + +
Sbjct: 164 GFELTPRAFNYLLNAYIRNKRMDYAVDCFGLMVDR--KVVPFVPYVNNVLSSLVRSNLID 221
Query: 65 EAMECYNEAV-----GENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKR 119
EA E YN+ V G+N + ++ ++ A K +EA+K+F R+ + P
Sbjct: 222 EAKEIYNKMVLIGVAGDNVTTQL-------LMRASLRERKPEEAVKIFRRVMSRGAEPDG 274
Query: 120 LAVNLG-------------------------------SFNVMADGYCGQGRFKDAIEVFR 148
L +L ++ + + +G ++A+ V
Sbjct: 275 LLFSLAVQAACKTPDLVMALDLLREMRGKLGVPASQETYTSVIVAFVKEGNMEEAVRVMD 334
Query: 149 KMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVN 208
+M + ++ +L++ CK L +A +L+ M ++G+ PD+ + ++++ +
Sbjct: 335 EMVGFGIPMSVIAATSLVNGYCKGNELGKALDLFNRMEEEGLAPDKVMFSVMVEWFCKNM 394
Query: 209 RVDDGATYFRKMVDSGLRPNLAVYNRLV 236
++ ++ +M + P+ + + ++
Sbjct: 395 EMEKAIEFYMRMKSVRIAPSSVLVHTMI 422
Score = 36.6 bits (83), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 104/241 (43%), Gaps = 17/241 (7%)
Query: 50 YGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDR 109
+ L+ Y + A++C+ V + V NN VL +L + DEA +++++
Sbjct: 172 FNYLLNAYIRNKRMDYAVDCFGLMV-DRKVVPFVPYVNN-VLSSLVRSNLIDEAKEIYNK 229
Query: 110 MKNEHNPPKRLAVNLGSFNV----MADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNL 165
M + + + NV + + + ++A+++FR++ PD L F+
Sbjct: 230 M---------VLIGVAGDNVTTQLLMRASLRERKPEEAVKIFRRVMSRGAEPDGLLFSLA 280
Query: 166 IDQLCKNGMLAEAEELYGEMSDK-GVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSG 224
+ CK L A +L EM K GV + TY ++ A + +++ +MV G
Sbjct: 281 VQAACKTPDLVMALDLLREMRGKLGVPASQETYTSVIVAFVKEGNMEEAVRVMDEMVGFG 340
Query: 225 LRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDEIL 283
+ ++ LV + L +A F+ M ++ L D + M++ ++++ +
Sbjct: 341 IPMSVIAATSLVNGYCKGNELGKALDLFNRMEEEGLAPDKVMFSVMVEWFCKNMEMEKAI 400
Query: 284 E 284
E
Sbjct: 401 E 401
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKG 56
K + ++YS ++ G R+G+ + FRL +E+ EK G+V D V+ L+ G
Sbjct: 794 KDVTPNVLLYSTVIAGHHREGNLNEAFRLHDEMLEK--GIVHDDTVFNLLVSG 844
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 119 bits (297), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 141/294 (47%), Gaps = 16/294 (5%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEE 64
G VAD Y+ ++ F + G + + F E++E G + V Y +L+ Y
Sbjct: 513 GLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREV--GCTPNVVTYTALIHAYLKAKKVS 570
Query: 65 EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPP------- 117
A E + + E + V ++++D C G+ ++A ++F+RM + P
Sbjct: 571 YANELFETMLSEGCLPNI--VTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFK 628
Query: 118 ----KRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNG 173
N+ ++ + DG+C R ++A ++ M C P+ + ++ LID LCK G
Sbjct: 629 QYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVG 688
Query: 174 MLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYN 233
L EA+E+ EMS+ G YTY L+D F+V R D + KM+++ PN+ +Y
Sbjct: 689 KLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYT 748
Query: 234 RLVGKLVQVGMLDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDEILEIV 286
++ L +VG DEA +M +K + + +Y M+ GK++ LE++
Sbjct: 749 EMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELL 802
Score = 85.1 bits (209), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 134/307 (43%), Gaps = 37/307 (12%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDG-------------------DSDGVFRLFEELKEKLG 41
M +G + + V YS L+ G + G D D F+ +++ E+
Sbjct: 579 MLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSER-- 636
Query: 42 GVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFD 101
+ V YG+L+ G+ EEA + + E + + + ++++D LC GK D
Sbjct: 637 ---PNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGC--EPNQIVYDALIDGLCKVGKLD 691
Query: 102 EALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLS 161
EA ++ M +EH P L +++ + D Y R A +V KM E C+P+ +
Sbjct: 692 EAQEVKTEM-SEHGFP----ATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVI 746
Query: 162 FNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMV 221
+ +ID LCK G EA +L M +KG P+ TY ++D + +++ +M
Sbjct: 747 YTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMG 806
Query: 222 DSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK-KLKMDDASYK-----FMMKALSD 275
G+ PN Y L+ + G LD A + + M + A Y+ F + +
Sbjct: 807 SKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIES 866
Query: 276 GGKLDEI 282
G LDEI
Sbjct: 867 LGLLDEI 873
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/335 (20%), Positives = 142/335 (42%), Gaps = 30/335 (8%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKE--KLGGVVSDGVVYGSLM--KG 56
M ++G P +++ L+ + GD ++L +++ + + G V ++ GS+ K
Sbjct: 363 MMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKD 422
Query: 57 YFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNP 116
+ + A + Y+E + + V ++ + +S LC+ GK+++A + M +
Sbjct: 423 SLNCDLLDLAEKAYSEMLA--AGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFI 480
Query: 117 PKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLA 176
P + +++ + + C + + A +F +M D ++ ++D CK G++
Sbjct: 481 P-----DTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIE 535
Query: 177 EAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLV 236
+A + + EM + G P+ TY L+ A + +V F M+ G PN+ Y+ L+
Sbjct: 536 QARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALI 595
Query: 237 GKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIE 296
+ G +++A F+ M + D F K D + + + G L DG
Sbjct: 596 DGHCKAGQVEKACQIFERMCGSKDVPDVDMYF--KQYDDNSERPNV--VTYGALLDG--- 648
Query: 297 FSEELQEFVKGELSKEGREEEVVKLMEKKEREKAE 331
K R EE KL++ E E
Sbjct: 649 ------------FCKSHRVEEARKLLDAMSMEGCE 671
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 112/247 (45%), Gaps = 13/247 (5%)
Query: 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECY 70
V+Y+ ++ G + G +D ++L + ++EK G + V Y +++ G+ M G E +E
Sbjct: 745 VIYTEMIDGLCKVGKTDEAYKLMQMMEEK--GCQPNVVTYTAMIDGFGMIGKIETCLELL 802
Query: 71 NEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVM 130
E +G + V + V ++D C NG D A L + MK H P + + +
Sbjct: 803 -ERMG-SKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWP-----THTAGYRKV 855
Query: 131 ADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGV 190
+G+ F +++ + ++G+ +P + LID L K L A L E++
Sbjct: 856 IEGF--NKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSA 913
Query: 191 NPDEY--TYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEA 248
+Y TY L+++ N+V+ F +M G+ P + + L+ L + + EA
Sbjct: 914 TLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEA 973
Query: 249 KSFFDIM 255
D +
Sbjct: 974 LLLLDFI 980
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 68/322 (21%), Positives = 123/322 (38%), Gaps = 51/322 (15%)
Query: 6 FVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLG-----GVVSDGVVYGSLMKGYFMK 60
FV D V Y+ L+ G LFEE + L + + V Y +L+ G K
Sbjct: 298 FVPDTVFYTKLISGLCEAS-------LFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNK 350
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
N + E S NS++ A C +G A KL +M + P +
Sbjct: 351 KQLGRCKRVLNMMMMEGCYP--SPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYV 408
Query: 121 AVN----------------------------------LGSFNV--MADGYCGQGRFKDAI 144
N L NV C G+++ A
Sbjct: 409 VYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAF 468
Query: 145 EVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDAC 204
V R+M PDT +++ +++ LC + A L+ EM G+ D YTY +++D+
Sbjct: 469 SVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSF 528
Query: 205 FEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDD- 263
+ ++ +F +M + G PN+ Y L+ ++ + A F+ M+ + + +
Sbjct: 529 CKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNI 588
Query: 264 ASYKFMMKALSDGGKLDEILEI 285
+Y ++ G++++ +I
Sbjct: 589 VTYSALIDGHCKAGQVEKACQI 610
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 68/202 (33%), Gaps = 37/202 (18%)
Query: 88 NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVF 147
N ++ C NG F AL+ R+K+ P R ++N + + R A +
Sbjct: 204 NVLVRKHCRNGSFSIALEELGRLKDFRFRPSR-----STYNCLIQAFLKADRLDSASLIH 258
Query: 148 RKMG---------EYRC-----------------------SPDTLSFNNLIDQLCKNGML 175
R+M RC PDT+ + LI LC+ +
Sbjct: 259 REMSLANLRMDGFTLRCFAYSLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEASLF 318
Query: 176 AEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRL 235
EA + M P+ TY L+ C ++ M+ G P+ ++N L
Sbjct: 319 EEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSL 378
Query: 236 VGKLVQVGMLDEAKSFFDIMVK 257
V G A MVK
Sbjct: 379 VHAYCTSGDHSYAYKLLKKMVK 400
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/219 (19%), Positives = 80/219 (36%), Gaps = 47/219 (21%)
Query: 84 AVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDA 143
V ++ LC F+EA+ +RM+ P N+ +++ + G + +
Sbjct: 302 TVFYTKLISGLCEASLFEEAMDFLNRMRATSCLP-----NVVTYSTLLCGCLNKKQLGRC 356
Query: 144 IEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDA 203
V M C P FN+L+ C +G Y Y LL
Sbjct: 357 KRVLNMMMMEGCYPSPKIFNSLVHAYCTSG------------------DHSYAYKLL--- 395
Query: 204 CFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKL------VQVGMLDEA-KSFFDIMV 256
+KMV G P VYN L+G + + +LD A K++ +++
Sbjct: 396 --------------KKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLA 441
Query: 257 KKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGI 295
+ ++ + + L GK ++ ++ ++ G I
Sbjct: 442 AGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFI 480
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 68/163 (41%), Gaps = 4/163 (2%)
Query: 162 FNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMV 221
N L+ + C+NG + A E G + D P TY L+ A + +R+D + R+M
Sbjct: 203 LNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMS 262
Query: 222 DSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDE 281
+ LR + L +VG EA + + + D Y ++ L + +E
Sbjct: 263 LANLRMDGFTLRCFAYSLCKVGKWREALTLVE--TENFVPDTVFYTKLISGLCEASLFEE 320
Query: 282 ILEIVGGILDDGGIEFSEELQEFVKGELSKE--GREEEVVKLM 322
++ + + + + G L+K+ GR + V+ +M
Sbjct: 321 AMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMM 363
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 118 bits (295), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 125/258 (48%), Gaps = 18/258 (6%)
Query: 42 GVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFD 101
G D V + SL+ G+ + EEAM N+ V +K V +++D+LC NG +
Sbjct: 137 GFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMV--EMGIKPDVVMYTTIIDSLCKNGHVN 194
Query: 102 EALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLS 161
AL LFD+M+N P ++ + + +G C GR++DA + R M + + PD ++
Sbjct: 195 YALSLFDQMENYGIRP-----DVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVIT 249
Query: 162 FNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTY-----GLLMDACFEVNRVDDGATY 216
FN LID K G +AEELY EM + P+ +TY G M+ C VD+
Sbjct: 250 FNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGC-----VDEARQM 304
Query: 217 FRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEA-KSFFDIMVKKLKMDDASYKFMMKALSD 275
F M G P++ Y L+ + +D+A K F+++ K L + +Y +++
Sbjct: 305 FYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQ 364
Query: 276 GGKLDEILEIVGGILDDG 293
GK + E+ ++ G
Sbjct: 365 VGKPNVAQEVFSHMVSRG 382
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 138/286 (48%), Gaps = 15/286 (5%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEE 64
G D V+Y+ ++ ++G + LF++++ G+ D V+Y SL+ G G
Sbjct: 172 GIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENY--GIRPDVVMYTSLVNGLCNSGRWR 229
Query: 65 EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124
+A +K + N+++DA GKF +A +L++ M P N+
Sbjct: 230 DADSLLRGMTKR--KIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAP-----NI 282
Query: 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGE 184
++ + +G+C +G +A ++F M C PD +++ +LI+ CK + +A +++ E
Sbjct: 283 FTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYE 342
Query: 185 MSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244
MS KG+ + TY L+ +V + + F MV G+ PN+ YN L+ L G
Sbjct: 343 MSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGK 402
Query: 245 LDEAKSFFDIMVKKLKMDDA-----SYKFMMKALSDGGKLDEILEI 285
+ +A F+ M K+ +MD +Y ++ L GKL++ L +
Sbjct: 403 VKKALMIFEDMQKR-EMDGVAPNIWTYNVLLHGLCYNGKLEKALMV 447
Score = 89.4 bits (220), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 108/226 (47%), Gaps = 14/226 (6%)
Query: 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME 63
KG D V Y+ L+ GF + D ++F E+ +K G+ + + Y +L++G+ G
Sbjct: 311 KGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQK--GLTGNTITYTTLIQGFGQVGKP 368
Query: 64 EEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKR---- 119
A E ++ V V + N +L LC NGK +AL +F+ M+ KR
Sbjct: 369 NVAQEVFSHMVSR--GVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQ------KREMDG 420
Query: 120 LAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAE 179
+A N+ ++NV+ G C G+ + A+ VF M + +++ +I +CK G + A
Sbjct: 421 VAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAV 480
Query: 180 ELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGL 225
L+ + KGV P+ TY ++ F + FRKM + G+
Sbjct: 481 NLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDGV 526
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 123/261 (47%), Gaps = 18/261 (6%)
Query: 10 PVVYSY--LMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAM 67
P +++Y L+ GF +G D ++F ++ K G D V Y SL+ G+ ++AM
Sbjct: 280 PNIFTYTSLINGFCMEGCVDEARQMFYLMETK--GCFPDVVAYTSLINGFCKCKKVDDAM 337
Query: 68 ECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSF 127
+ + E + + + +++ GK + A ++F M + PP N+ ++
Sbjct: 338 KIFYEM--SQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPP-----NIRTY 390
Query: 128 NVMADGYCGQGRFKDAIEVFRKMGEYR---CSPDTLSFNNLIDQLCKNGMLAEAEELYGE 184
NV+ C G+ K A+ +F M + +P+ ++N L+ LC NG L +A ++ +
Sbjct: 391 NVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFED 450
Query: 185 MSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244
M + ++ TY +++ + +V + F + G++PN+ Y ++ L + G+
Sbjct: 451 MRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGL 510
Query: 245 LDEAKSFFDIMVKKLKMDDAS 265
EA F +K+K D S
Sbjct: 511 KHEAHVLF----RKMKEDGVS 527
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 91/198 (45%), Gaps = 6/198 (3%)
Query: 83 SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKD 142
S + +L+ + KFD + L D H ++ +L + N++ + +C +
Sbjct: 71 SIIDFTKLLNVIAKMKKFDVVINLCD-----HLQIMGVSHDLYTCNLLMNCFCQSSQPYL 125
Query: 143 AIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMD 202
A KM + PD ++F +LI+ C + EA + +M + G+ PD Y ++D
Sbjct: 126 ASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIID 185
Query: 203 ACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK-KLKM 261
+ + V+ + F +M + G+RP++ +Y LV L G +A S M K K+K
Sbjct: 186 SLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKP 245
Query: 262 DDASYKFMMKALSDGGKL 279
D ++ ++ A GK
Sbjct: 246 DVITFNALIDAFVKEGKF 263
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 85/195 (43%), Gaps = 2/195 (1%)
Query: 139 RFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYG 198
+F +A+++F M E R P + F L++ + K L + GV+ D YT
Sbjct: 52 QFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCN 111
Query: 199 LLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK 258
LLM+ + ++ +++ KM+ G P++ + L+ ++EA S + MV+
Sbjct: 112 LLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEM 171
Query: 259 -LKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEE 317
+K D Y ++ +L G ++ L + +++ GI + + L GR +
Sbjct: 172 GIKPDVVMYTTIIDSLCKNGHVNYALSLFDQ-MENYGIRPDVVMYTSLVNGLCNSGRWRD 230
Query: 318 VVKLMEKKEREKAEA 332
L+ + K +
Sbjct: 231 ADSLLRGMTKRKIKP 245
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/320 (26%), Positives = 150/320 (46%), Gaps = 10/320 (3%)
Query: 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAM 67
AD V+++ ++ + D LF+E++ K G+ + V Y SL+ G +A
Sbjct: 183 ADVVIFNTIIDSLCKYRHVDDALNLFKEMETK--GIRPNVVTYSSLISCLCSYGRWSDAS 240
Query: 68 ECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSF 127
+ ++ + + + V N+++DA GKF EA KL D M P ++ ++
Sbjct: 241 QLLSDMI--EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDP-----DIFTY 293
Query: 128 NVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSD 187
N + +G+C R A ++F M C PD ++N LI CK+ + + EL+ EMS
Sbjct: 294 NSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSH 353
Query: 188 KGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDE 247
+G+ D TY L+ F D+ F++MV G+ P++ Y+ L+ L G L++
Sbjct: 354 RGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEK 413
Query: 248 AKSFFDIMVK-KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVK 306
A FD M K ++K+D Y M++ + GK+D+ ++ + G +
Sbjct: 414 ALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMIS 473
Query: 307 GELSKEGREEEVVKLMEKKE 326
G SK +E L + KE
Sbjct: 474 GLCSKRLLQEAYALLKKMKE 493
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 105/235 (44%), Gaps = 8/235 (3%)
Query: 48 VVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLF 107
V SL+ GY +A+ ++ V + + +++ L + K EA+ L
Sbjct: 81 VTLSSLLNGYCHGKRISDAVALVDQMV--EMGYRPDTITFTTLIHGLFLHNKASEAVALV 138
Query: 108 DRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLID 167
DRM P NL ++ V+ +G C +G A + KM + D + FN +ID
Sbjct: 139 DRMVQRGCQP-----NLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIID 193
Query: 168 QLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRP 227
LCK + +A L+ EM KG+ P+ TY L+ R D + M++ + P
Sbjct: 194 SLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINP 253
Query: 228 NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDE 281
NL +N L+ V+ G EA+ D M+K+ + D +Y ++ +LD+
Sbjct: 254 NLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDK 308
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/319 (23%), Positives = 141/319 (44%), Gaps = 54/319 (16%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M KG + V YS L+ G +L ++ EK + + V + +L+ + +
Sbjct: 211 METKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEK--KINPNLVTFNALIDAFVKE 268
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
G EA + +++ + S+ NS+++ C + + D+A ++F+ M ++ P
Sbjct: 269 GKFVEAEKLHDDMIKR--SIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFP--- 323
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY--------------------RC----- 155
+L ++N + G+C R +D E+FR+M C
Sbjct: 324 --DLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQK 381
Query: 156 ----------SPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACF 205
PD ++++ L+D LC NG L +A E++ M + D Y Y +++
Sbjct: 382 VFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMC 441
Query: 206 EVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLK----- 260
+ +VDDG F + G++PN+ YN ++ L +L EA + ++KK+K
Sbjct: 442 KAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYA----LLKKMKEDGPL 497
Query: 261 MDDASYKFMMKA-LSDGGK 278
D +Y +++A L DG K
Sbjct: 498 PDSGTYNTLIRAHLRDGDK 516
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 95/197 (48%), Gaps = 9/197 (4%)
Query: 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME 63
+G V D V Y+ L+ G DGD D ++F+++ GV D + Y L+ G G
Sbjct: 354 RGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSD--GVPPDIMTYSILLDGLCNNGKL 411
Query: 64 EEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123
E+A+E ++ + S +K+ ++++ +C GK D+ LF + + P N
Sbjct: 412 EKALEVFDYM--QKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKP-----N 464
Query: 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183
+ ++N M G C + ++A + +KM E PD+ ++N LI ++G A + EL
Sbjct: 465 VVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIR 524
Query: 184 EMSDKGVNPDEYTYGLL 200
EM D T GL+
Sbjct: 525 EMRSCRFVGDASTIGLV 541
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 97/201 (48%), Gaps = 10/201 (4%)
Query: 88 NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAV--NLGSFNVMADGYCGQGRFKDAIE 145
N +L A+ KFD + L ++M+ RL + NL ++N++ + +C + + A+
Sbjct: 14 NKLLSAIAKMKKFDLVISLGEKMQ-------RLGISHNLYTYNILINCFCRRSQISLALA 66
Query: 146 VFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACF 205
+ KM + P ++ ++L++ C +++A L +M + G PD T+ L+ F
Sbjct: 67 LLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLF 126
Query: 206 EVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIM-VKKLKMDDA 264
N+ + +MV G +PNL Y +V L + G +D A + + M K++ D
Sbjct: 127 LHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVV 186
Query: 265 SYKFMMKALSDGGKLDEILEI 285
+ ++ +L +D+ L +
Sbjct: 187 IFNTIIDSLCKYRHVDDALNL 207
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 65/155 (41%), Gaps = 1/155 (0%)
Query: 127 FNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMS 186
FN + +F I + KM S + ++N LI+ C+ ++ A L G+M
Sbjct: 13 FNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMM 72
Query: 187 DKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLD 246
G P T L++ R+ D +MV+ G RP+ + L+ L
Sbjct: 73 KLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKAS 132
Query: 247 EAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLD 280
EA + D MV++ + + +Y ++ L G +D
Sbjct: 133 EAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDID 167
Score = 36.6 bits (83), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 73/184 (39%), Gaps = 2/184 (1%)
Query: 150 MGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNR 209
M + R P FN L+ + K L +M G++ + YTY +L++ ++
Sbjct: 1 MVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQ 60
Query: 210 VDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-LKMDDASYKF 268
+ KM+ G P++ + L+ + +A + D MV+ + D ++
Sbjct: 61 ISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTT 120
Query: 269 MMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKERE 328
++ L K E + +V ++ G V G L K G + L+ K E
Sbjct: 121 LIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNG-LCKRGDIDLAFNLLNKMEAA 179
Query: 329 KAEA 332
K EA
Sbjct: 180 KIEA 183
>sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140
OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1
Length = 874
Score = 115 bits (289), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 147/291 (50%), Gaps = 16/291 (5%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEE 64
G + + V+Y+ ++ F R+G +D ++ E+++E+ G+V D V + S + +G
Sbjct: 212 GVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREE--GLVPDIVTFNSRISALCKEGKVL 269
Query: 65 EAMECY-----NEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKR 119
+A + +E +G + +++ N +L C G ++A LF+ ++ +
Sbjct: 270 DASRIFSDMELDEYLG---LPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDD---- 322
Query: 120 LAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAE 179
+L S+N+ G G+F +A V ++M + P S+N L+D LCK GML++A+
Sbjct: 323 -LASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAK 381
Query: 180 ELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKL 239
+ G M GV PD TYG L+ V +VD + ++M+ + PN N L+ L
Sbjct: 382 TIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSL 441
Query: 240 VQVGMLDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDEILEIVGGI 289
++G + EA+ M +K +D + ++ L G+LD+ +EIV G+
Sbjct: 442 WKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGM 492
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 94/209 (44%), Gaps = 5/209 (2%)
Query: 85 VANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAI 144
+ +++L+ LC G+F EA LF M E P +A +N+ +C QG+ A
Sbjct: 525 ITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVA-----YNIFIHHFCKQGKISSAF 579
Query: 145 EVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDAC 204
V + M + C ++N+LI L + E L EM +KG++P+ TY +
Sbjct: 580 RVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYL 639
Query: 205 FEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDA 264
E +V+D +M+ + PN+ + L+ +V D A+ F+ V +
Sbjct: 640 CEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVFETAVSICGQKEG 699
Query: 265 SYKFMMKALSDGGKLDEILEIVGGILDDG 293
Y M L G+L + E++ +LD G
Sbjct: 700 LYSLMFNELLAAGQLLKATELLEAVLDRG 728
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 116/251 (46%), Gaps = 9/251 (3%)
Query: 31 RLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGEN-SSVKMSAVANNS 89
R+F E+ G+ D ++ + M EE E +N + + K+S++ S
Sbjct: 25 RIFSSPSEESHGISLDAT--PTIARILVRAKMHEEIQELHNLILSSSIQKTKLSSLL--S 80
Query: 90 VLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRK 149
V+ + D+A F +++ P + +V L +N++ + + R + +++
Sbjct: 81 VVSIFAKSNHIDKAFPQFQLVRSRF-PENKPSVYL--YNLLLESCIKERRVEFVSWLYKD 137
Query: 150 MGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNR 209
M +P T +FN LI LC + + A EL+ EM +KG P+E+T+G+L+ +
Sbjct: 138 MVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGL 197
Query: 210 VDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-LKMDDASYKF 268
D G M G+ PN +YN +V + G D+++ + M ++ L D ++
Sbjct: 198 TDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNS 257
Query: 269 MMKALSDGGKL 279
+ AL GK+
Sbjct: 258 RISALCKEGKV 268
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 119/277 (42%), Gaps = 26/277 (9%)
Query: 13 YSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNE 72
Y+ + G VR G + +++ +K G+ Y LM G GM +A
Sbjct: 329 YNIWLQGLVRHGKFIEAETVLKQMTDK--GIGPSIYSYNILMDGLCKLGMLSDA----KT 382
Query: 73 AVG--ENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVM 130
VG + + V AV +L C+ GK D A L M + P N + N++
Sbjct: 383 IVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLP-----NAYTCNIL 437
Query: 131 ADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGV 190
GR +A E+ RKM E DT++ N ++D LC +G L +A E+ M G
Sbjct: 438 LHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHG- 496
Query: 191 NPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKS 250
G L ++ + VDD ++++ P+L Y+ L+ L + G EAK+
Sbjct: 497 ---SAALGNLGNS--YIGLVDDS------LIENNCLPDLITYSTLLNGLCKAGRFAEAKN 545
Query: 251 FF-DIMVKKLKMDDASYKFMMKALSDGGKLDEILEIV 286
F ++M +KL+ D +Y + GK+ ++
Sbjct: 546 LFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVL 582
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 107/249 (42%), Gaps = 10/249 (4%)
Query: 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAM 67
D V Y+ + F + G FR+ +++++K G Y SL+ G +K E
Sbjct: 557 PDSVAYNIFIHHFCKQGKISSAFRVLKDMEKK--GCHKSLETYNSLILGLGIKNQIFEIH 614
Query: 68 ECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSF 127
+E + + + N+ + LC K ++A L D M K +A N+ SF
Sbjct: 615 GLMDEM--KEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQ-----KNIAPNVFSF 667
Query: 128 NVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSD 187
+ + +C F A EVF C ++ + ++L G L +A EL + D
Sbjct: 668 KYLIEAFCKVPDFDMAQEVFETAVSI-CGQKEGLYSLMFNELLAAGQLLKATELLEAVLD 726
Query: 188 KGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDE 247
+G + Y L+++ + + ++ + KM+D G + A ++ L ++G E
Sbjct: 727 RGFELGTFLYKDLVESLCKKDELEVASGILHKMIDRGYGFDPAALMPVIDGLGKMGNKKE 786
Query: 248 AKSFFDIMV 256
A SF D M+
Sbjct: 787 ANSFADKMM 795
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 70/138 (50%), Gaps = 2/138 (1%)
Query: 192 PDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSF 251
P Y Y LL+++C + RV+ + ++ MV G+ P +N L+ L +D A+
Sbjct: 110 PSVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAAREL 169
Query: 252 FDIMVKK-LKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELS 310
FD M +K K ++ ++ +++ G D+ LE++ ++ G+ ++ + +
Sbjct: 170 FDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNA-MESFGVLPNKVIYNTIVSSFC 228
Query: 311 KEGREEEVVKLMEKKERE 328
+EGR ++ K++EK E
Sbjct: 229 REGRNDDSEKMVEKMREE 246
>sp|Q9ZUA2|PP141_ARATH Pentatricopeptide repeat-containing protein At2g01740
OS=Arabidopsis thaliana GN=At2g01740 PE=3 SV=1
Length = 559
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 92/359 (25%), Positives = 164/359 (45%), Gaps = 17/359 (4%)
Query: 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVV-SDGVVYGSLMKGYFMKGMEEEAM 67
D + Y+ L+ G R+GD + E L+ G + D V + SL G+ M +E
Sbjct: 90 DVISYNSLIDGHCRNGDIRSASLVLESLRASHGFICKPDIVSFNSLFNGFSKMKMLDEVF 149
Query: 68 ECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSF 127
Y + + S + V ++ +D C +G+ ALK F MK + P N+ +F
Sbjct: 150 -VYMGVMLKCCSP--NVVTYSTWIDTFCKSGELQLALKSFHSMKRDALSP-----NVVTF 201
Query: 128 NVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSD 187
+ DGYC G + A+ ++++M R S + +++ LID CK G + AEE+Y M +
Sbjct: 202 TCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVE 261
Query: 188 KGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDE 247
V P+ Y ++D F+ D+ + KM++ G+R ++ Y ++ L G L E
Sbjct: 262 DRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKE 321
Query: 248 AKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVK 306
A + M K L D + MM A G++ + + +++ G L +
Sbjct: 322 ATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMID 381
Query: 307 GELSKEGR-EEEVVKLMEKKEREK-----AEAKAREAEAAEAAKRSARAAIASLIPSKF 359
G ++K G+ E +V +K + +A +E + E + ++ + A L+P KF
Sbjct: 382 G-IAKNGQLHEAIVYFCIEKANDVMYTVLIDALCKEGDFIEVERLFSKISEAGLVPDKF 439
Score = 92.0 bits (227), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 133/301 (44%), Gaps = 42/301 (13%)
Query: 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECY 70
V Y+ L+ GF + G+ ++ + E V + +VY +++ G+F +G + AM+
Sbjct: 234 VTYTALIDGFCKKGEMQRAEEMYSRMVED--RVEPNSLVYTTIIDGFFQRGDSDNAMKFL 291
Query: 71 NEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVM 130
+ + N +++ A ++ LC NGK EA ++ + M+ P ++ F M
Sbjct: 292 AKML--NQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVP-----DMVIFTTM 344
Query: 131 ADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNN-------------------------- 164
+ Y GR K A+ ++ K+ E PD ++ +
Sbjct: 345 MNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYFCIEKANDV 404
Query: 165 ----LIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTY-GLLMDACFEVNRVDDGATYFRK 219
LID LCK G E E L+ ++S+ G+ PD++ Y + C + N VD R
Sbjct: 405 MYTVLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTR- 463
Query: 220 MVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGGK 278
MV GL +L Y L+ L G++ EA+ FD M+ + D A + +++A G
Sbjct: 464 MVQEGLLLDLLAYTTLIYGLASKGLMVEARQVFDEMLNSGISPDSAVFDLLIRAYEKEGN 523
Query: 279 L 279
+
Sbjct: 524 M 524
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 81/197 (41%), Gaps = 10/197 (5%)
Query: 88 NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVF 147
N + L N+ +LK + + P R SFN + C G+ K A ++
Sbjct: 25 NKHIHQLINSNCGILSLKFLAYLVSRGYTPHR-----SSFNSVVSFVCKLGQVKFAEDIV 79
Query: 148 RKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKG---VNPDEYTYGLLMDAC 204
M + C PD +S+N+LID C+NG + A + + PD ++ L +
Sbjct: 80 HSMPRFGCEPDVISYNSLIDGHCRNGDIRSASLVLESLRASHGFICKPDIVSFNSLFNGF 139
Query: 205 FEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEA-KSFFDIMVKKLKMDD 263
++ +D+ Y M+ PN+ Y+ + + G L A KSF + L +
Sbjct: 140 SKMKMLDEVFVYMGVMLKC-CSPNVVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNV 198
Query: 264 ASYKFMMKALSDGGKLD 280
++ ++ G L+
Sbjct: 199 VTFTCLIDGYCKAGDLE 215
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 76/187 (40%), Gaps = 10/187 (5%)
Query: 102 EALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFK-DAIEVFRKMGEYRCSPDTL 160
EAL+ R++ N P N + + + CG K A V R +P
Sbjct: 4 EALQFLSRLRKSSNLPDPFTCN-KHIHQLINSNCGILSLKFLAYLVSRGY-----TPHRS 57
Query: 161 SFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKM 220
SFN+++ +CK G + AE++ M G PD +Y L+D + + +
Sbjct: 58 SFNSVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASLVLESL 117
Query: 221 VDSG---LRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGG 277
S +P++ +N L ++ MLDE + +M+K + +Y + G
Sbjct: 118 RASHGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVMLKCCSPNVVTYSTWIDTFCKSG 177
Query: 278 KLDEILE 284
+L L+
Sbjct: 178 ELQLALK 184
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 44/183 (24%)
Query: 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAM 67
A+ V+Y+ L+ ++GD V RLF ++ E G+V D +Y S + G
Sbjct: 401 ANDVMYTVLIDALCKEGDFIEVERLFSKISE--AGLVPDKFMYTSWIAG----------- 447
Query: 68 ECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSF 127
LC G +A KL RM E L ++L ++
Sbjct: 448 --------------------------LCKQGNLVDAFKLKTRMVQEG-----LLLDLLAY 476
Query: 128 NVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSD 187
+ G +G +A +VF +M SPD+ F+ LI K G +A A +L +M
Sbjct: 477 TTLIYGLASKGLMVEARQVFDEMLNSGISPDSAVFDLLIRAYEKEGNMAAASDLLLDMQR 536
Query: 188 KGV 190
+G+
Sbjct: 537 RGL 539
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 115 bits (287), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 151/329 (45%), Gaps = 11/329 (3%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEE 64
G+ D + ++ L+ G + L + + ++ G + V YG ++ G +G +
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQR--GCQPNLVTYGVVVNGLCKRGDID 242
Query: 65 EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124
A N+ E + ++ + V ++V+D+LC D+AL LF M+N+ P N+
Sbjct: 243 LAFNLLNKM--EAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRP-----NV 295
Query: 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGE 184
+++ + C R+ DA + M E + +P+ ++FN LID K G L EAE+LY E
Sbjct: 296 ITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDE 355
Query: 185 MSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244
M + ++PD +TY L++ +R+D+ F M+ PN+ YN L+ +
Sbjct: 356 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKR 415
Query: 245 LDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQE 303
+DE F M ++ L + +Y ++ D + ++ DG
Sbjct: 416 IDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNT 475
Query: 304 FVKGELSKEGREEEVVKLMEKKEREKAEA 332
+ G L K G+ E+ + + E +R K E
Sbjct: 476 LLDG-LCKNGKLEKAMVVFEYLQRSKMEP 503
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 121/242 (50%), Gaps = 9/242 (3%)
Query: 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECY 70
V ++ L+ FV++G +L++E+ ++ + D Y SL+ G+ M +EA +
Sbjct: 331 VTFNALIDAFVKEGKLVEAEKLYDEMIKR--SIDPDIFTYSSLINGFCMHDRLDEAKHMF 388
Query: 71 NEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVM 130
+ ++ + V N++++ C + DE ++LF M + L N ++ +
Sbjct: 389 ELMISKDCFP--NVVTYNTLINGFCKAKRIDEGVELFREMSQ-----RGLVGNTVTYTTL 441
Query: 131 ADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGV 190
G+ +A VF++M P+ +++N L+D LCKNG L +A ++ + +
Sbjct: 442 IHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM 501
Query: 191 NPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKS 250
P YTY ++++ + +V+DG F + G++P++ +YN ++ + G+ +EA +
Sbjct: 502 EPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADA 561
Query: 251 FF 252
F
Sbjct: 562 LF 563
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 99/196 (50%), Gaps = 9/196 (4%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M K + V Y+ L+ GF + D LF E+ ++ G+V + V Y +L+ G+F
Sbjct: 391 MISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQR--GLVGNTVTYTTLIHGFFQA 448
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
+ A + + V + V + + N++LD LC NGK ++A+ +F+ ++ P
Sbjct: 449 RDCDNAQMVFKQMVSD--GVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP--- 503
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
+ ++N+M +G C G+ +D ++F + PD + +N +I C+ G+ EA+
Sbjct: 504 --TIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADA 561
Query: 181 LYGEMSDKGVNPDEYT 196
L+ +M + G PD T
Sbjct: 562 LFRKMREDGPLPDSGT 577
Score = 72.0 bits (175), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 9/170 (5%)
Query: 88 NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAV--NLGSFNVMADGYCGQGRFKDAIE 145
N +L A+ KFD + L ++M+ RL + NL ++N++ + +C + + A+
Sbjct: 89 NKLLSAIAKMKKFDLVISLGEKMQ-------RLGISHNLYTYNILINCFCRRSQISLALA 141
Query: 146 VFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACF 205
+ KM + P ++ ++L++ C +++A L +M + G PD T+ L+ F
Sbjct: 142 LLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLF 201
Query: 206 EVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIM 255
N+ + +MV G +PNL Y +V L + G +D A + + M
Sbjct: 202 LHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM 251
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 108/241 (44%), Gaps = 19/241 (7%)
Query: 88 NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVF 147
N +++ C + AL L +M P V L S + +GYC R DA+ +
Sbjct: 124 NILINCFCRRSQISLALALLGKMMKLGYEPS--IVTLSS---LLNGYCHGKRISDAVALV 178
Query: 148 RKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEV 207
+M E PDT++F LI L + +EA L M +G P+ TYG++++ +
Sbjct: 179 DQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKR 238
Query: 208 NRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-LKMDDASY 266
+D KM + + N+ +Y+ ++ L + D+A + F M K ++ + +Y
Sbjct: 239 GDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITY 298
Query: 267 KFMMKAL------SDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVK 320
++ L SD +L + +++ ++ + F+ + FV KEG+ E K
Sbjct: 299 SSLISCLCNYERWSDASRL--LSDMIERKINPNVVTFNALIDAFV-----KEGKLVEAEK 351
Query: 321 L 321
L
Sbjct: 352 L 352
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 7/229 (3%)
Query: 99 KFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD 158
K D+A+ LF M P ++ FN + +F I + KM S +
Sbjct: 65 KLDDAIGLFGGMVKSRPLP-----SIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHN 119
Query: 159 TLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFR 218
++N LI+ C+ ++ A L G+M G P T L++ R+ D
Sbjct: 120 LYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVD 179
Query: 219 KMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGG 277
+MV+ G RP+ + L+ L EA + D MV++ + + +Y ++ L G
Sbjct: 180 QMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRG 239
Query: 278 KLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKE 326
+D ++ ++ IE + + V L K E++ + L + E
Sbjct: 240 DIDLAFNLLNK-MEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEME 287
>sp|Q9LN69|PPR50_ARATH Putative pentatricopeptide repeat-containing protein At1g19290
OS=Arabidopsis thaliana GN=At1g19290 PE=3 SV=2
Length = 904
Score = 115 bits (287), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 145/306 (47%), Gaps = 11/306 (3%)
Query: 5 GFVADPVVY--SYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGM 62
F P V+ S ++ + R G+ D +E + LG + + V Y SL+ GY M G
Sbjct: 218 SFEVSPDVFTCSIVVNAYCRSGNVDKAMVFAKETESSLG-LELNVVTYNSLINGYAMIG- 275
Query: 63 EEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAV 122
+ E M + E V + V S++ C G +EA +F+ +K K+L
Sbjct: 276 DVEGMTRVLRLMSERG-VSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKE-----KKLVA 329
Query: 123 NLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELY 182
+ + V+ DGYC G+ +DA+ V M E +T N+LI+ CK+G L EAE+++
Sbjct: 330 DQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIF 389
Query: 183 GEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQV 242
M+D + PD +TY L+D VD+ +M + P + YN L+ ++
Sbjct: 390 SRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRI 449
Query: 243 GMLDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEEL 301
G + S + +M+K+ + D+ S +++AL G +E +++ +L G + + L
Sbjct: 450 GAFHDVLSLWKMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDTITL 509
Query: 302 QEFVKG 307
+ G
Sbjct: 510 NVMISG 515
Score = 102 bits (254), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 134/279 (48%), Gaps = 10/279 (3%)
Query: 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME 63
+G + V Y+ L+ G+ + G + +FE LKEK +V+D +YG LM GY G
Sbjct: 290 RGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEK--KLVADQHMYGVLMDGYCRTGQI 347
Query: 64 EEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123
+A+ ++ + V+ + NS+++ C +G+ EA ++F RM + P
Sbjct: 348 RDAVRVHDNMI--EIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDH---- 401
Query: 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183
++N + DGYC G +A+++ +M + P +++N L+ + G + L+
Sbjct: 402 -HTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWK 460
Query: 184 EMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG 243
M +GVN DE + L++A F++ ++ + ++ GL + N ++ L ++
Sbjct: 461 MMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDTITLNVMISGLCKME 520
Query: 244 MLDEAKSFFD-IMVKKLKMDDASYKFMMKALSDGGKLDE 281
++EAK D + + + K +Y+ + G L E
Sbjct: 521 KVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLKE 559
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 77/323 (23%), Positives = 150/323 (46%), Gaps = 11/323 (3%)
Query: 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAME 68
D Y+ L+ G+ R G D +L +++ +K VV + Y L+KGY G + +
Sbjct: 400 DHHTYNTLVDGYCRAGYVDEALKLCDQMCQK--EVVPTVMTYNILLKGYSRIGAFHDVLS 457
Query: 69 CYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFN 128
+ + V ++ +++L+AL G F+EA+KL+ E+ + L + + N
Sbjct: 458 LWKMML--KRGVNADEISCSTLLEALFKLGDFNEAMKLW-----ENVLARGLLTDTITLN 510
Query: 129 VMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDK 188
VM G C + +A E+ + +RC P ++ L K G L EA + M K
Sbjct: 511 VMISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLKEAFAVKEYMERK 570
Query: 189 GVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEA 248
G+ P Y L+ F+ ++ A ++ GL P +A Y L+ +GM+D+A
Sbjct: 571 GIFPTIEMYNTLISGAFKYRHLNKVADLVIELRARGLTPTVATYGALITGWCNIGMIDKA 630
Query: 249 -KSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILD-DGGIEFSEELQEFVK 306
+ F+++ K + ++ + +L K+DE ++ I+D D + + L+EF++
Sbjct: 631 YATCFEMIEKGITLNVNICSKIANSLFRLDKIDEACLLLQKIVDFDLLLPGYQSLKEFLE 690
Query: 307 GELSKEGREEEVVKLMEKKEREK 329
+ + +++ + +E +K
Sbjct: 691 ASATTCLKTQKIAESVENSTPKK 713
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 123/289 (42%), Gaps = 38/289 (13%)
Query: 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME 63
KG +Y+ L+ G + + V L EL+ + G+ YG+L+ G+ GM
Sbjct: 570 KGIFPTIEMYNTLISGAFKYRHLNKVADLVIELRAR--GLTPTVATYGALITGWCNIGMI 627
Query: 64 EEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKN----------- 112
++A E + + ++ ++ + + ++L K DEA L ++ +
Sbjct: 628 DKAYATCFEMIEKGITLNVNICS--KIANSLFRLDKIDEACLLLQKIVDFDLLLPGYQSL 685
Query: 113 ---------------------EHNPPKRLAV-NLGSFNVMADGYCGQGRFKDAIEVFRKM 150
E++ PK+L V N +NV G C G+ +DA ++F +
Sbjct: 686 KEFLEASATTCLKTQKIAESVENSTPKKLLVPNNIVYNVAIAGLCKAGKLEDARKLFSDL 745
Query: 151 -GEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNR 209
R PD ++ LI G + +A L EM+ KG+ P+ TY L+ ++
Sbjct: 746 LSSDRFIPDEYTYTILIHGCAIAGDINKAFTLRDEMALKGIIPNIVTYNALIKGLCKLGN 805
Query: 210 VDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK 258
VD K+ G+ PN YN L+ LV+ G + EA + M++K
Sbjct: 806 VDRAQRLLHKLPQKGITPNAITYNTLIDGLVKSGNVAEAMRLKEKMIEK 854
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 84/185 (45%), Gaps = 18/185 (9%)
Query: 53 LMKGY--FMKGMEEEAMECYN-----EAVGENSSVKMSAVANNSVLDA----LCNNGKFD 101
L+ GY + +E A C E+V ENS+ K V NN V + LC GK +
Sbjct: 678 LLPGYQSLKEFLEASATTCLKTQKIAESV-ENSTPKKLLVPNNIVYNVAIAGLCKAGKLE 736
Query: 102 EALKLF-DRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTL 160
+A KLF D + ++ P ++ ++ G G A + +M P+ +
Sbjct: 737 DARKLFSDLLSSDRFIPDEY-----TYTILIHGCAIAGDINKAFTLRDEMALKGIIPNIV 791
Query: 161 SFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKM 220
++N LI LCK G + A+ L ++ KG+ P+ TY L+D + V + KM
Sbjct: 792 TYNALIKGLCKLGNVDRAQRLLHKLPQKGITPNAITYNTLIDGLVKSGNVAEAMRLKEKM 851
Query: 221 VDSGL 225
++ GL
Sbjct: 852 IEKGL 856
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 98/226 (43%), Gaps = 7/226 (3%)
Query: 70 YNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNV 129
+ E V S + +L G AL +FD M N P L+ N N+
Sbjct: 141 WGELVRVFKEFSFSPTVFDMILKVYAEKGLVKNALHVFDNMGNYGRIPSLLSCNSLLSNL 200
Query: 130 MADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEM-SDK 188
+ +G A+ V+ +M + SPD + + +++ C++G + +A E S
Sbjct: 201 VR-----KGENFVALHVYDQMISFEVSPDVFTCSIVVNAYCRSGNVDKAMVFAKETESSL 255
Query: 189 GVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEA 248
G+ + TY L++ + V+ R M + G+ N+ Y L+ + G+++EA
Sbjct: 256 GLELNVVTYNSLINGYAMIGDVEGMTRVLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEA 315
Query: 249 KSFFDIMV-KKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDG 293
+ F+++ KKL D Y +M G++ + + + +++ G
Sbjct: 316 EHVFELLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIG 361
Score = 39.7 bits (91), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M +KG + + V Y+ L+ G + G+ D RL +L +K G+ + + Y +L+ G
Sbjct: 781 MALKGIIPNIVTYNALIKGLCKLGNVDRAQRLLHKLPQK--GITPNAITYNTLIDGLVKS 838
Query: 61 GMEEEAME 68
G EAM
Sbjct: 839 GNVAEAMR 846
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 150/313 (47%), Gaps = 37/313 (11%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGV-VYGSLMKGYFM 59
M KG D V Y ++ G + GD+D F L ++++ G + GV +Y +++ G
Sbjct: 212 MVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQ---GKLEPGVLIYNTIIDGLCK 268
Query: 60 KGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLF-DRMKNEHNP-- 116
++A+ + E E ++ + V +S++ LCN G++ +A +L D ++ + NP
Sbjct: 269 YKHMDDALNLFKEM--ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDV 326
Query: 117 ---------------------------PKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRK 149
+ + ++ +++ + +G+C R +A ++F
Sbjct: 327 FTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEF 386
Query: 150 MGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNR 209
M C PD +++N LI CK + E E++ EMS +G+ + TY +L+ F+
Sbjct: 387 MVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGD 446
Query: 210 VDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK-KLKMDDASYKF 268
D F++MV G+ PN+ YN L+ L + G L++A F+ + + K++ +Y
Sbjct: 447 CDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNI 506
Query: 269 MMKALSDGGKLDE 281
M++ + GK+++
Sbjct: 507 MIEGMCKAGKVED 519
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 131/282 (46%), Gaps = 10/282 (3%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEE 64
G+ + V S L+ G+ L +++ + G + V + +L+ G F+
Sbjct: 146 GYEPNIVTLSSLLNGYCHSKRISEAVALVDQMF--VTGYQPNTVTFNTLIHGLFLHNKAS 203
Query: 65 EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124
EAM + V + + V V++ LC G D A L ++M+ P L
Sbjct: 204 EAMALIDRMVAKGCQPDL--VTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLI--- 258
Query: 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGE 184
+N + DG C DA+ +F++M P+ +++++LI LC G ++A L +
Sbjct: 259 --YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSD 316
Query: 185 MSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244
M ++ +NPD +T+ L+DA + ++ + + +MV + P++ Y+ L+
Sbjct: 317 MIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDR 376
Query: 245 LDEAKSFFDIMVKKLKMDD-ASYKFMMKALSDGGKLDEILEI 285
LDEAK F+ MV K D +Y ++K +++E +E+
Sbjct: 377 LDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEV 418
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 107/230 (46%), Gaps = 11/230 (4%)
Query: 9 DP--VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEA 66
DP V YS L+ GF D ++FE + K D V Y +L+KG+ EE
Sbjct: 358 DPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSK--HCFPDVVTYNTLIKGFCKYKRVEEG 415
Query: 67 MECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGS 126
ME + E + + V N ++ L G D A ++F M ++ PP N+ +
Sbjct: 416 MEVFREM--SQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPP-----NIMT 468
Query: 127 FNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMS 186
+N + DG C G+ + A+ VF + + P ++N +I+ +CK G + + +L+ +S
Sbjct: 469 YNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLS 528
Query: 187 DKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLV 236
KGV PD Y ++ ++ F++M + G PN YN L+
Sbjct: 529 LKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLI 578
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 113/257 (43%), Gaps = 57/257 (22%)
Query: 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME 63
+G V + V Y+ L+ G + GD D +F+E+ VSDG
Sbjct: 425 RGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEM-------VSDG---------------- 461
Query: 64 EEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123
V + + N++LD LC NGK ++A+ +F+ ++ P
Sbjct: 462 ----------------VPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP-----T 500
Query: 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183
+ ++N+M +G C G+ +D ++F + PD +++N +I C+ G EA+ L+
Sbjct: 501 IYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFK 560
Query: 184 EMSDKGVNPDEYTYGLLMDACFEVNRVDDG-----ATYFRKMVDSGLRPNLAVYNRLVGK 238
EM + G P+ Y L+ A R+ DG A ++M G + + LV
Sbjct: 561 EMKEDGTLPNSGCYNTLIRA-----RLRDGDREASAELIKEMRSCGFAGDASTIG-LVTN 614
Query: 239 LVQVGMLDEAKSFFDIM 255
++ G LD KSF D++
Sbjct: 615 MLHDGRLD--KSFLDML 629
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 96/204 (47%), Gaps = 6/204 (2%)
Query: 83 SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKD 142
S + + +L A+ KFD + L ++M+N P N +++++ + +C + +
Sbjct: 80 SIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPH-----NHYTYSILINCFCRRSQLPL 134
Query: 143 AIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMD 202
A+ V KM + P+ ++ ++L++ C + ++EA L +M G P+ T+ L+
Sbjct: 135 ALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIH 194
Query: 203 ACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK-KLKM 261
F N+ + +MV G +P+L Y +V L + G D A + + M + KL+
Sbjct: 195 GLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEP 254
Query: 262 DDASYKFMMKALSDGGKLDEILEI 285
Y ++ L +D+ L +
Sbjct: 255 GVLIYNTIIDGLCKYKHMDDALNL 278
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 82/197 (41%), Gaps = 6/197 (3%)
Query: 139 RFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYG 198
+ DA+ +F +M + R P + F+ L+ + K L +M + G+ + YTY
Sbjct: 61 KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 120
Query: 199 LLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIM-VK 257
+L++ +++ KM+ G PN+ + L+ + EA + D M V
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180
Query: 258 KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEF--VKGELSKEGRE 315
+ + ++ ++ L K E + ++ ++ G +L + V L K G
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGC---QPDLVTYGVVVNGLCKRGDT 237
Query: 316 EEVVKLMEKKEREKAEA 332
+ L+ K E+ K E
Sbjct: 238 DLAFNLLNKMEQGKLEP 254
Score = 32.3 bits (72), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 3 VKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGM 62
+KG D V Y+ ++ GF R G + LF+E+KE G + + Y +L++ G
Sbjct: 529 LKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKED--GTLPNSGCYNTLIRARLRDGD 586
Query: 63 EEEAMECYNE 72
E + E E
Sbjct: 587 REASAELIKE 596
>sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640,
mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2
SV=1
Length = 523
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/300 (29%), Positives = 139/300 (46%), Gaps = 18/300 (6%)
Query: 37 KEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCN 96
K K G+V Y L++G+ A + ++E + N V + +A N++LDALC
Sbjct: 198 KAKGFGIVPSAKTYSILVRGWARIRDASGARKVFDEMLERNCVVDL--LAYNALLDALCK 255
Query: 97 NGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCS 156
+G D K+F M N P + SF + YC G A +V +M Y
Sbjct: 256 SGDVDGGYKMFQEMGNLGLKP-----DAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLV 310
Query: 157 PDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLM----DACFEVNRVDD 212
P+ +FN++I LCKN + +A L EM KG NPD +TY +M D C EVNR
Sbjct: 311 PNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHC-EVNR--- 366
Query: 213 GATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMV-KKLKMDDASYKFMMK 271
+M + P+ YN ++ L+++G D A ++ M +K A+Y M+
Sbjct: 367 ATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDRATEIWEGMSERKFYPTVATYTVMIH 426
Query: 272 AL-SDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKA 330
L GKL+E ++D+G +S + E ++ L G+ + V L K ER +
Sbjct: 427 GLVRKKGKLEEACRYFEMMIDEGIPPYSTTV-EMLRNRLVGWGQMDVVDVLAGKMERSSS 485
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 106/247 (42%), Gaps = 10/247 (4%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M + V D + Y+ L+ + GD DG +++F+E+ G+ D + + Y
Sbjct: 234 MLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNL--GLKPDAYSFAIFIHAYCDA 291
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
G A + + + + + N ++ LC N K D+A L D M + P
Sbjct: 292 GDVHSAYKVLDRM--KRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKGANP--- 346
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
+ ++N + +C A ++ +M +C PD ++N ++ L + G A E
Sbjct: 347 --DTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDRATE 404
Query: 181 LYGEMSDKGVNPDEYTYGLLMDACFEVN-RVDDGATYFRKMVDSGLRPNLAVYNRLVGKL 239
++ MS++ P TY +++ ++++ YF M+D G+ P L +L
Sbjct: 405 IWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEGIPPYSTTVEMLRNRL 464
Query: 240 VQVGMLD 246
V G +D
Sbjct: 465 VGWGQMD 471
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 64/161 (39%), Gaps = 1/161 (0%)
Query: 127 FNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMS 186
F ++ Y +A F +M E+ P + L+ LC + A+E +G+
Sbjct: 141 FWIVFRAYSRANLPSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAK 200
Query: 187 DKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLD 246
G+ P TY +L+ + F +M++ +L YN L+ L + G +D
Sbjct: 201 GFGIVPSAKTYSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVD 260
Query: 247 EAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDEILEIV 286
F M LK D S+ + A D G + +++
Sbjct: 261 GGYKMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVL 301
>sp|Q9FKR3|PP404_ARATH Pentatricopeptide repeat-containing protein At5g38730
OS=Arabidopsis thaliana GN=At5g38730 PE=2 SV=1
Length = 596
Score = 113 bits (283), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/283 (27%), Positives = 139/283 (49%), Gaps = 11/283 (3%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEE 64
G VA+ VY+ L+ + GD + +L E++EK GV D Y +L+ Y K M
Sbjct: 198 GVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEK--GVFPDIFTYNTLISVYCKKSMHF 255
Query: 65 EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124
EA+ + E S V + V NS + G+ EA +LF +K++ + N
Sbjct: 256 EALSVQDRM--ERSGVAPNIVTYNSFIHGFSREGRMREATRLFREIKDD------VTANH 307
Query: 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGE 184
++ + DGYC +A+ + M SP +++N+++ +LC++G + EA L E
Sbjct: 308 VTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTE 367
Query: 185 MSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244
MS K + PD T L++A ++ + +KM++SGL+ ++ Y L+ +V
Sbjct: 368 MSGKKIEPDNITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLE 427
Query: 245 LDEAK-SFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIV 286
L+ AK F ++ K A+Y +++ + K DEI +++
Sbjct: 428 LENAKEELFSMIEKGFSPGYATYSWLVDGFYNQNKQDEITKLL 470
Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 125/278 (44%), Gaps = 11/278 (3%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEE 64
G + V Y+ + GF R+G RLF E+K+ V ++ V Y +L+ GY +
Sbjct: 268 GVAPNIVTYNSFIHGFSREGRMREATRLFREIKD---DVTANHVTYTTLIDGYCRMNDID 324
Query: 65 EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124
EA+ V E+ V NS+L LC +G+ EA +L M + P + N
Sbjct: 325 EALRL--REVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEPDNITCN- 381
Query: 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGE 184
+ + YC A++V +KM E D S+ LI CK L A+E
Sbjct: 382 ----TLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLELENAKEELFS 437
Query: 185 MSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244
M +KG +P TY L+D + N+ D+ + GL ++A+Y L+ ++ ++
Sbjct: 438 MIEKGFSPGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGLCADVALYRGLIRRICKLEQ 497
Query: 245 LDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDE 281
+D AK F+ M KK L D + M A GK+ E
Sbjct: 498 VDYAKVLFESMEKKGLVGDSVIFTTMAYAYWRTGKVTE 535
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 114/247 (46%), Gaps = 32/247 (12%)
Query: 98 GKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAI-EVFRKMGEYRCS 156
G ++++ +F+++++ P +L + V+ + Q R D + ++F+KM +
Sbjct: 147 GMINDSIVVFEQIRSCGLKP-----HLQACTVLLNSLVKQ-RLTDTVWKIFKKMVKLGVV 200
Query: 157 PDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDA-C-----FEVNRV 210
+ +N L+ K+G +AE+L EM +KGV PD +TY L+ C FE V
Sbjct: 201 ANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSV 260
Query: 211 DDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFM- 269
D +M SG+ PN+ YN + + G + EA F + + + +Y +
Sbjct: 261 QD------RMERSGVAPNIVTYNSFIHGFSREGRMREATRLFREIKDDVTANHVTYTTLI 314
Query: 270 -----MKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEK 324
M + + +L E++E G G + ++ L+ +L ++GR E +L+ +
Sbjct: 315 DGYCRMNDIDEALRLREVMESRG--FSPGVVTYNSILR-----KLCEDGRIREANRLLTE 367
Query: 325 KEREKAE 331
+K E
Sbjct: 368 MSGKKIE 374
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 71/167 (42%), Gaps = 1/167 (0%)
Query: 127 FNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMS 186
F+ + Y G D+I VF ++ P + L++ L K + +++ +M
Sbjct: 136 FSWLMIYYAKAGMINDSIVVFEQIRSCGLKPHLQACTVLLNSLVKQRLTDTVWKIFKKMV 195
Query: 187 DKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLD 246
GV + + Y +L+ AC + + +M + G+ P++ YN L+ + M
Sbjct: 196 KLGVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHF 255
Query: 247 EAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292
EA S D M + + + +Y + S G++ E + I DD
Sbjct: 256 EALSVQDRMERSGVAPNIVTYNSFIHGFSREGRMREATRLFREIKDD 302
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/263 (20%), Positives = 100/263 (38%), Gaps = 44/263 (16%)
Query: 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAM 67
A+ V Y+ L+ G+ R D D RL E ++ + G V Y S+++ G EA
Sbjct: 305 ANHVTYTTLIDGYCRMNDIDEALRLREVMESR--GFSPGVVTYNSILRKLCEDGRIREAN 362
Query: 68 ECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSF 127
E G+ ++ + N++++A C A+K+ +M L +++ S+
Sbjct: 363 RLLTEMSGKK--IEPDNITCNTLINAYCKIEDMVSAVKVKKKMIESG-----LKLDMYSY 415
Query: 128 NVMADGYCGQGRFKDAIEVFRKMGEYRCSP------------------------------ 157
+ G+C ++A E M E SP
Sbjct: 416 KALIHGFCKVLELENAKEELFSMIEKGFSPGYATYSWLVDGFYNQNKQDEITKLLEEFEK 475
Query: 158 -----DTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDD 212
D + LI ++CK + A+ L+ M KG+ D + + A + +V +
Sbjct: 476 RGLCADVALYRGLIRRICKLEQVDYAKVLFESMEKKGLVGDSVIFTTMAYAYWRTGKVTE 535
Query: 213 GATYFRKMVDSGLRPNLAVYNRL 235
+ F M + L NL +Y +
Sbjct: 536 ASALFDVMYNRRLMVNLKLYKSI 558
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 12/155 (7%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M KGF YS+L+ GF D + +L EE +++ G+ +D +Y L++ K
Sbjct: 438 MIEKGFSPGYATYSWLVDGFYNQNKQDEITKLLEEFEKR--GLCADVALYRGLIRR-ICK 494
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
+ + + E++ E + +V ++ A GK EA LFD M N +RL
Sbjct: 495 LEQVDYAKVLFESM-EKKGLVGDSVIFTTMAYAYWRTGKVTEASALFDVMYN-----RRL 548
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRC 155
VNL + ++ Y G D + F RC
Sbjct: 549 MVNLKLYKSISASYAGDN---DVLRFFWSHVGDRC 580
Score = 38.5 bits (88), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 4/168 (2%)
Query: 157 PDTLS--FNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGA 214
P+ +S F+ L+ K GM+ ++ ++ ++ G+ P +L+++ + D
Sbjct: 129 PEDVSHVFSWLMIYYAKAGMINDSIVVFEQIRSCGLKPHLQACTVLLNSLVKQRLTDTVW 188
Query: 215 TYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDA-SYKFMMKAL 273
F+KMV G+ N+ VYN LV + G ++A+ M +K D +Y ++
Sbjct: 189 KIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVY 248
Query: 274 SDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKL 321
E L + + G F+ G S+EGR E +L
Sbjct: 249 CKKSMHFEALSVQDRMERSGVAPNIVTYNSFIHG-FSREGRMREATRL 295
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Query: 163 NNLIDQLCKNGMLAEAEELYGEMSDKGVNPDE--YTYGLLMDACFEVNRVDDGATYFRKM 220
+ L+D+L + +L+ L + +P++ + + LM + ++D F ++
Sbjct: 100 HQLLDKLAQRELLSSPLVLRSLVGGVSEDPEDVSHVFSWLMIYYAKAGMINDSIVVFEQI 159
Query: 221 VDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK 257
GL+P+L L+ LV+ + D F MVK
Sbjct: 160 RSCGLKPHLQACTVLLNSLVKQRLTDTVWKIFKKMVK 196
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 127/258 (49%), Gaps = 9/258 (3%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M +G + D VVY+ L+ GF + GD + F E+ + + D + Y +++ G+
Sbjct: 342 MIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSR--DITPDVLTYTAIISGFCQI 399
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
G EA + ++E + ++ +V +++ C G +A ++ + M P
Sbjct: 400 GDMVEAGKLFHEMFCKG--LEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSP--- 454
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
N+ ++ + DG C +G A E+ +M + P+ ++N++++ LCK+G + EA +
Sbjct: 455 --NVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVK 512
Query: 181 LYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240
L GE G+N D TY LMDA + +D ++M+ GL+P + +N L+
Sbjct: 513 LVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFC 572
Query: 241 QVGMLDEAKSFFDIMVKK 258
GML++ + + M+ K
Sbjct: 573 LHGMLEDGEKLLNWMLAK 590
Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 139/295 (47%), Gaps = 14/295 (4%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M G + V Y+ L+ G ++GD D L E+ + G+ + Y S++ G
Sbjct: 447 MIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKI--GLQPNIFTYNSIVNGLCKS 504
Query: 61 GMEEEAMECYNEAVGENSSVKMSA--VANNSVLDALCNNGKFDEALKLFDRMKNEHNPPK 118
G EEA++ VGE + ++A V +++DA C +G+ D+A ++ M K
Sbjct: 505 GNIEEAVK----LVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLG-----K 555
Query: 119 RLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEA 178
L + +FNV+ +G+C G +D ++ M +P+ +FN+L+ Q C L A
Sbjct: 556 GLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAA 615
Query: 179 EELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGK 238
+Y +M +GV PD TY L+ + + + F++M G +++ Y+ L+
Sbjct: 616 TAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKG 675
Query: 239 LVQVGMLDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292
++ EA+ FD M ++ L D + F G + D I++ + I+++
Sbjct: 676 FLKRKKFLEAREVFDQMRREGLAADKEIFDFFSDTKYKGKRPDTIVDPIDEIIEN 730
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 103/240 (42%), Gaps = 7/240 (2%)
Query: 84 AVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDA 143
++ ++V++ C G+ D+ KL + MK K L N + + C + +A
Sbjct: 281 VISYSTVVNGYCRFGELDKVWKLIEVMKR-----KGLKPNSYIYGSIIGLLCRICKLAEA 335
Query: 144 IEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDA 203
E F +M PDT+ + LID CK G + A + + EM + + PD TY ++
Sbjct: 336 EEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISG 395
Query: 204 CFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-LKMD 262
++ + + F +M GL P+ + L+ + G + +A + M++ +
Sbjct: 396 FCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPN 455
Query: 263 DASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLM 322
+Y ++ L G LD E++ + G V G L K G EE VKL+
Sbjct: 456 VVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNG-LCKSGNIEEAVKLV 514
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 91/197 (46%), Gaps = 5/197 (2%)
Query: 116 PPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGML 175
P + N+ S+N++ C GR K+A + M +PD +S++ +++ C+ G L
Sbjct: 238 PEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGEL 297
Query: 176 AEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRL 235
+ +L M KG+ P+ Y YG ++ + ++ + F +M+ G+ P+ VY L
Sbjct: 298 DKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTL 357
Query: 236 VGKLVQVGMLDEA-KSFFDIMVKKLKMDDASYKFMMKALSDGGKLDE----ILEIVGGIL 290
+ + G + A K F+++ + + D +Y ++ G + E E+ L
Sbjct: 358 IDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGL 417
Query: 291 DDGGIEFSEELQEFVKG 307
+ + F+E + + K
Sbjct: 418 EPDSVTFTELINGYCKA 434
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 14/179 (7%)
Query: 91 LDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMA-----DGYCGQGRFKDAIE 145
L + G EA ++F++M N L +++ S NV D Y + AI
Sbjct: 182 FQVLVDFGLLREARRVFEKMLNYG-----LVLSVDSCNVYLTRLSKDCY----KTATAII 232
Query: 146 VFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACF 205
VFR+ E + S+N +I +C+ G + EA L M KG PD +Y +++
Sbjct: 233 VFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYC 292
Query: 206 EVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDA 264
+D M GL+PN +Y ++G L ++ L EA+ F M+++ + D
Sbjct: 293 RFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDT 351
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 112 bits (280), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 80/318 (25%), Positives = 149/318 (46%), Gaps = 11/318 (3%)
Query: 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAM 67
AD V+Y+ ++ G + D LF E+ K G+ D Y SL+ G +A
Sbjct: 256 ADVVIYNTIIDGLCKYKHMDDALNLFTEMDNK--GIRPDVFTYSSLISCLCNYGRWSDAS 313
Query: 68 ECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSF 127
++ + + + V ++++DA GK EA KL+D M P ++ ++
Sbjct: 314 RLLSDMI--ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDP-----DIFTY 366
Query: 128 NVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSD 187
+ + +G+C R +A +F M C P+ ++++ LI CK + E EL+ EMS
Sbjct: 367 SSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQ 426
Query: 188 KGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDE 247
+G+ + TY L+ F+ D+ F++MV G+ PN+ YN L+ L + G L +
Sbjct: 427 RGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAK 486
Query: 248 AKSFFDIMVK-KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVK 306
A F+ + + ++ D +Y M++ + GK+++ E+ + G +
Sbjct: 487 AMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMIS 546
Query: 307 GELSKEGREEEVVKLMEK 324
G ++G +EE L++K
Sbjct: 547 G-FCRKGSKEEADSLLKK 563
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 122/254 (48%), Gaps = 9/254 (3%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEE 64
G+ D ++ L+ G + L +++ ++ G D V YG+++ G +G +
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQR--GCQPDLVTYGTVVNGLCKRGDID 240
Query: 65 EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124
A+ + E ++ V N+++D LC D+AL LF M N+ P ++
Sbjct: 241 LALSLLKKM--EKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRP-----DV 293
Query: 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGE 184
+++ + C GR+ DA + M E + +P+ ++F+ LID K G L EAE+LY E
Sbjct: 294 FTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDE 353
Query: 185 MSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244
M + ++PD +TY L++ +R+D+ F M+ PN+ Y+ L+ +
Sbjct: 354 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKR 413
Query: 245 LDEAKSFFDIMVKK 258
++E F M ++
Sbjct: 414 VEEGMELFREMSQR 427
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/316 (23%), Positives = 138/316 (43%), Gaps = 14/316 (4%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEE 64
G D YS + F R + ++ + G D V SL+ GY
Sbjct: 113 GISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKL--GYEPDIVTLSSLLNGYCHSKRIS 170
Query: 65 EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124
+A+ ++ V K +++ L + K EA+ L D+M P +L
Sbjct: 171 DAVALVDQMV--EMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQP-----DL 223
Query: 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGE 184
++ + +G C +G A+ + +KM + + D + +N +ID LCK + +A L+ E
Sbjct: 224 VTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTE 283
Query: 185 MSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244
M +KG+ PD +TY L+ R D + M++ + PN+ ++ L+ V+ G
Sbjct: 284 MDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 343
Query: 245 LDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDEILEIVGGILD----DGGIEFSE 299
L EA+ +D M+K+ + D +Y ++ +LDE + ++ + +S
Sbjct: 344 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYST 403
Query: 300 ELQEFVKGELSKEGRE 315
++ F K + +EG E
Sbjct: 404 LIKGFCKAKRVEEGME 419
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 106/235 (45%), Gaps = 21/235 (8%)
Query: 9 DPVVYSY--LMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEA 66
DP +++Y L+ GF D +FE + K + V Y +L+KG+ EE
Sbjct: 360 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISK--DCFPNVVTYSTLIKGFCKAKRVEEG 417
Query: 67 MECYNEAVGENSSVKMSAVANNSVLDALCNNGKF-----DEALKLFDRMKNEHNPPKRLA 121
ME + E + + N+V +G F D A +F +M + P
Sbjct: 418 MELFRE-------MSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHP---- 466
Query: 122 VNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEEL 181
N+ ++N++ DG C G+ A+ VF + PD ++N +I+ +CK G + + EL
Sbjct: 467 -NILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWEL 525
Query: 182 YGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLV 236
+ +S KGV+P+ Y ++ ++ + +KM + G PN YN L+
Sbjct: 526 FCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLI 580
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 112/241 (46%), Gaps = 7/241 (2%)
Query: 83 SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKD 142
S V N +L A+ KF+ + L ++M+ ++ +L ++++ + +C + +
Sbjct: 82 SIVEFNKLLSAVAKMNKFELVISLGEQMQTLG-----ISHDLYTYSIFINCFCRRSQLSL 136
Query: 143 AIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMD 202
A+ V KM + PD ++ ++L++ C + +++A L +M + G PD +T+ L+
Sbjct: 137 ALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIH 196
Query: 203 ACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK-KLKM 261
F N+ + +MV G +P+L Y +V L + G +D A S M K K++
Sbjct: 197 GLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEA 256
Query: 262 DDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKL 321
D Y ++ L +D+ L + +D+ GI + L GR + +L
Sbjct: 257 DVVIYNTIIDGLCKYKHMDDALNLFTE-MDNKGIRPDVFTYSSLISCLCNYGRWSDASRL 315
Query: 322 M 322
+
Sbjct: 316 L 316
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 112 bits (280), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 114/239 (47%), Gaps = 8/239 (3%)
Query: 48 VVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLF 107
V +GSL+ G+ + +A V S + + V N+++D LC NG+ + AL+L
Sbjct: 142 VTFGSLLHGFCLVNRIGDAFSLVILMV--KSGYEPNVVVYNTLIDGLCKNGELNIALELL 199
Query: 108 DRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLID 167
+ M+ K L ++ ++N + G C GR+ DA + R M + +PD ++F LID
Sbjct: 200 NEMEK-----KGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALID 254
Query: 168 QLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRP 227
K G L EA+ELY EM V+P+ TY +++ R+ D F M G P
Sbjct: 255 VFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFP 314
Query: 228 NLAVYNRLVGKLVQVGMLDEAKSFFDIM-VKKLKMDDASYKFMMKALSDGGKLDEILEI 285
N+ YN L+ + M+DE F M + D +Y ++ GKL L+I
Sbjct: 315 NVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDI 373
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 138/284 (48%), Gaps = 18/284 (6%)
Query: 5 GFVADPVVYSYLMLGFV---RDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKG 61
G+ V + L+ GF R GD+ + L + G + VVY +L+ G G
Sbjct: 136 GYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVK-----SGYEPNVVVYNTLIDGLCKNG 190
Query: 62 MEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLF-DRMKNEHNPPKRL 120
A+E NE E + V N++L LC +G++ +A ++ D MK NP
Sbjct: 191 ELNIALELLNEM--EKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINP---- 244
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
++ +F + D + QG +A E++++M + P+ +++N++I+ LC +G L +A++
Sbjct: 245 --DVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKK 302
Query: 181 LYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240
+ M+ KG P+ TY L+ + VD+G F++M G ++ YN L+
Sbjct: 303 TFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYC 362
Query: 241 QVGMLDEAKSFFDIMV-KKLKMDDASYKFMMKALSDGGKLDEIL 283
QVG L A F MV +++ D ++ ++ L G+++ L
Sbjct: 363 QVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESAL 406
Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 148/329 (44%), Gaps = 11/329 (3%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M G+ + VVY+ L+ G ++G+ + L E+++K G+ +D V Y +L+ G
Sbjct: 167 MVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKK--GLGADVVTYNTLLTGLCYS 224
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
G +A + + S+ V +++D G DEA +L+ M P +
Sbjct: 225 GRWSDAARMLRDMM--KRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNV 282
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
++N + +G C GR DA + F M C P+ +++N LI CK M+ E +
Sbjct: 283 -----TYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMK 337
Query: 181 LYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240
L+ MS +G N D +TY L+ +V ++ F MV + P++ + L+ L
Sbjct: 338 LFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLC 397
Query: 241 QVGMLDEAKSFFDIMVKKLK-MDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSE 299
G ++ A FD M + K + +Y M+ L K+++ E+ + +G +
Sbjct: 398 VNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDAR 457
Query: 300 ELQEFVKGELSKEGREEEVVKLMEKKERE 328
+ G L K G E +L+ + + E
Sbjct: 458 TYTIMILG-LCKNGPRREADELIRRMKEE 485
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 82/184 (44%), Gaps = 6/184 (3%)
Query: 99 KFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD 158
+F++A LF M + P ++ F + R++ I +KM Y S D
Sbjct: 51 RFEDAFALFFEMVHSQPLP-----SIVDFTRLLTATANLRRYETVIYFSQKMELYGISHD 105
Query: 159 TLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFR 218
SF LI C+ L+ A + G+M G P T+G L+ VNR+ D +
Sbjct: 106 LYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVI 165
Query: 219 KMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGG 277
MV SG PN+ VYN L+ L + G L+ A + M KK L D +Y ++ L G
Sbjct: 166 LMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSG 225
Query: 278 KLDE 281
+ +
Sbjct: 226 RWSD 229
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 88/187 (47%), Gaps = 9/187 (4%)
Query: 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME 63
KG + V Y+ L+ GF + D +LF+ + + G +D Y +L+ GY G
Sbjct: 310 KGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCE--GFNADIFTYNTLIHGYCQVGKL 367
Query: 64 EEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123
A++ + V V + + +L LC NG+ + AL FD M+ +
Sbjct: 368 RVALDIFCWMVSRR--VTPDIITHCILLHGLCVNGEIESALVKFDDMRESEK-----YIG 420
Query: 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183
+ ++N+M G C + + A E+F ++ PD ++ +I LCKNG EA+EL
Sbjct: 421 IVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIR 480
Query: 184 EMSDKGV 190
M ++G+
Sbjct: 481 RMKEEGI 487
>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290,
mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2
SV=1
Length = 880
Score = 112 bits (280), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 150/320 (46%), Gaps = 10/320 (3%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEE 64
GFV D + + L+LGF R + ++F+ + +++ + V Y L+ G G E
Sbjct: 225 GFVLDSHIGTSLLLGFCRGLNLRDALKVFDVMSKEVT-CAPNSVSYSILIHGLCEVGRLE 283
Query: 65 EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124
EA + +GE + S ++ ALC+ G D+A LFD M P+ N+
Sbjct: 284 EAFG-LKDQMGEKGC-QPSTRTYTVLIKALCDRGLIDKAFNLFDEMI-----PRGCKPNV 336
Query: 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGE 184
++ V+ DG C G+ ++A V RKM + R P +++N LI+ CK+G + A EL
Sbjct: 337 HTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTV 396
Query: 185 MSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244
M + P+ T+ LM+ V + ++M+D+GL P++ YN L+ L + G
Sbjct: 397 MEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGH 456
Query: 245 LDEAKSFFDIM-VKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQE 303
++ A M ++ D ++ ++ A GK D +G +L GI E
Sbjct: 457 MNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRK-GISLDEVTGT 515
Query: 304 FVKGELSKEGREEEVVKLME 323
+ + K G+ + + ++E
Sbjct: 516 TLIDGVCKVGKTRDALFILE 535
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 148/324 (45%), Gaps = 15/324 (4%)
Query: 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME 63
KG Y+ L+ G D F LF+E+ + G + Y L+ G G
Sbjct: 295 KGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPR--GCKPNVHTYTVLIDGLCRDGKI 352
Query: 64 EEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123
EEA + V + + S + N++++ C +G+ A +L M+ P N
Sbjct: 353 EEANGVCRKMVKDR--IFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKP-----N 405
Query: 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183
+ +FN + +G C G+ A+ + ++M + SPD +S+N LID LC+ G + A +L
Sbjct: 406 VRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLS 465
Query: 184 EMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG 243
M+ + PD T+ +++A + + D + + M+ G+ + L+ + +VG
Sbjct: 466 SMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVG 525
Query: 244 MLDEAKSFFDIMVK-KLKMDDASYKFMMKALSDGGKLDEILEIVGGI----LDDGGIEFS 298
+A + +VK ++ S ++ LS G K+ E L ++G I L + ++
Sbjct: 526 KTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYT 585
Query: 299 EELQEFVK-GELSKEGREEEVVKL 321
+ ++ G+++ R E++KL
Sbjct: 586 TLVDGLIRSGDITGSFRILELMKL 609
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/353 (20%), Positives = 137/353 (38%), Gaps = 63/353 (17%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M G D V Y+ L+ G R+G + ++L + + D + + +++ + +
Sbjct: 432 MLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMN--CFDIEPDCLTFTAIINAFCKQ 489
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEH--NPPK 118
G + A + + + V +++D +C GK +AL + + + P
Sbjct: 490 GKADVASAFLGLML--RKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPH 547
Query: 119 RLAVNLG----------------------------SFNVMADGYCGQGRFKDAIEVFRKM 150
L V L ++ + DG G + + M
Sbjct: 548 SLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELM 607
Query: 151 GEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRV 210
C P+ + +I+ LC+ G + EAE+L M D GV+P+ TY +++ ++
Sbjct: 608 KLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKL 667
Query: 211 DDGATYFRKMVDSGLRPNLAVYNRLVGKLV--QVGMLD-EAKSFFDIMVKKLKMDDASYK 267
D R MV+ G N +Y+ L+ V Q G+ + E + DI +++
Sbjct: 668 DRALETVRAMVERGYELNDRIYSSLLQGFVLSQKGIDNSEESTVSDIALRE--------- 718
Query: 268 FMMKALSDGGKLDEILEIV---GGILDDGGIEFSEELQEFVKGELSKEGREEE 317
+D ++E++ +V GG + I F+ L KEGR +E
Sbjct: 719 ------TDPECINELISVVEQLGGCISGLCI--------FLVTRLCKEGRTDE 757
>sp|Q9C6S6|PPR67_ARATH Putative pentatricopeptide repeat-containing protein At1g31840
OS=Arabidopsis thaliana GN=At1g31840 PE=2 SV=2
Length = 840
Score = 111 bits (278), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 137/274 (50%), Gaps = 10/274 (3%)
Query: 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECY 70
V + L+ GF + G+ D F LF+ ++++ G+ D + Y +L+ GYF GM + +
Sbjct: 287 VTFCTLINGFCKRGEMDRAFDLFKVMEQR--GIEPDLIAYSTLIDGYFKAGMLGMGHKLF 344
Query: 71 NEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVM 130
++A+ + VK+ V +S +D +G A ++ RM + P N+ ++ ++
Sbjct: 345 SQAL--HKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISP-----NVVTYTIL 397
Query: 131 ADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGV 190
G C GR +A ++ ++ + P +++++LID CK G L LY +M G
Sbjct: 398 IKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGY 457
Query: 191 NPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKS 250
PD YG+L+D + + + KM+ +R N+ V+N L+ ++ DEA
Sbjct: 458 PPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALK 517
Query: 251 FFDIM-VKKLKMDDASYKFMMKALSDGGKLDEIL 283
F +M + +K D A++ +M+ G+L+E L
Sbjct: 518 VFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEAL 551
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/309 (24%), Positives = 134/309 (43%), Gaps = 35/309 (11%)
Query: 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME 63
KG D VV+S + +V+ GD +++ + + G+ + V Y L+KG G
Sbjct: 350 KGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQ--GISPNVVTYTILIKGLCQDGRI 407
Query: 64 EEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPP------ 117
EA Y + + ++ S V +S++D C G L++ M PP
Sbjct: 408 YEAFGMYGQIL--KRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYG 465
Query: 118 ------------------------KRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY 153
+ + +N+ FN + DG+C RF +A++VFR MG Y
Sbjct: 466 VLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIY 525
Query: 154 RCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDG 213
PD +F ++ G L EA L+ M G+ PD Y L+DA + + G
Sbjct: 526 GIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMKPTIG 585
Query: 214 ATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK-KLKMDDASYKFMMKA 272
F M + + ++AV N ++ L + +++A FF+ +++ K++ D +Y M+
Sbjct: 586 LQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICG 645
Query: 273 LSDGGKLDE 281
+LDE
Sbjct: 646 YCSLRRLDE 654
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/302 (24%), Positives = 136/302 (45%), Gaps = 35/302 (11%)
Query: 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECY 70
VV++ L+ G+ R D ++F + + G+ D + ++M+ M+G EEA+ +
Sbjct: 497 VVFNSLIDGWCRLNRFDEALKVFRLMG--IYGIKPDVATFTTVMRVSIMEGRLEEALFLF 554
Query: 71 NEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNE-------------HNPP 117
++ A+A +++DA C + K L+LFD M+ H
Sbjct: 555 FRMF--KMGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLF 612
Query: 118 K-----------------RLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTL 160
K ++ ++ ++N M GYC R +A +F + P+T+
Sbjct: 613 KCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTV 672
Query: 161 SFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKM 220
+ LI LCKN + A ++ M++KG P+ TYG LMD + ++ F +M
Sbjct: 673 TLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEM 732
Query: 221 VDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMV-KKLKMDDASYKFMMKALSDGGKL 279
+ G+ P++ Y+ ++ L + G +DEA + F + KL D +Y +++ G+L
Sbjct: 733 QEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVGRL 792
Query: 280 DE 281
E
Sbjct: 793 VE 794
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 106/219 (48%), Gaps = 9/219 (4%)
Query: 41 GGVVSDGV-VYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGK 99
GG+ GV +G ++ F KG +A++ ++ V E ++ V+ N VL L + +
Sbjct: 210 GGIEPSGVSAHGFVLDALFCKGEVTKALD-FHRLVMERG-FRVGIVSCNKVLKGL-SVDQ 266
Query: 100 FDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDT 159
+ A +L + + P N+ +F + +G+C +G A ++F+ M + PD
Sbjct: 267 IEVASRLLSLVLDCGPAP-----NVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDL 321
Query: 160 LSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRK 219
++++ LID K GML +L+ + KGV D + +D + + + +++
Sbjct: 322 IAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKR 381
Query: 220 MVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK 258
M+ G+ PN+ Y L+ L Q G + EA + ++K+
Sbjct: 382 MLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKR 420
Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 93/202 (46%), Gaps = 17/202 (8%)
Query: 31 RLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYN----EAVGENSSVKMSAVA 86
+ F L E G + D V Y +++ GY +EA + G N+ V
Sbjct: 622 KFFNNLIE--GKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNT------VT 673
Query: 87 NNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEV 146
++ LC N D A+++F M + + P N ++ + D + + + ++
Sbjct: 674 LTILIHVLCKNNDMDGAIRMFSIMAEKGSKP-----NAVTYGCLMDWFSKSVDIEGSFKL 728
Query: 147 FRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFE 206
F +M E SP +S++ +ID LCK G + EA ++ + D + PD Y +L+ +
Sbjct: 729 FEEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCK 788
Query: 207 VNRVDDGATYFRKMVDSGLRPN 228
V R+ + A + M+ +G++P+
Sbjct: 789 VGRLVEAALLYEHMLRNGVKPD 810
Score = 65.1 bits (157), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 44/192 (22%)
Query: 3 VKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGM 62
V F + V + L+ ++ D DG R+F + EK G + V YG LM +F K +
Sbjct: 664 VTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEK--GSKPNAVTYGCLMD-WFSKSV 720
Query: 63 EEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAV 122
+ E + KLF+ M+ + P
Sbjct: 721 DIEG------------------------------------SFKLFEEMQEKGISP----- 739
Query: 123 NLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELY 182
++ S++++ DG C +GR +A +F + + + PD +++ LI CK G L EA LY
Sbjct: 740 SIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVGRLVEAALLY 799
Query: 183 GEMSDKGVNPDE 194
M GV PD+
Sbjct: 800 EHMLRNGVKPDD 811
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 111/248 (44%), Gaps = 47/248 (18%)
Query: 89 SVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFR 148
++ L NG FD A K+FD M FNV+ G +D R
Sbjct: 104 TIAHVLIRNGMFDVADKVFDEMITNRGK---------DFNVL-------GSIRD-----R 142
Query: 149 KMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKG-VNPDEYTYGLLMDACFEV 207
+ D F L++ C+ GM+ +A E++ + G V P + Y +L ++
Sbjct: 143 SL-----DADVCKF--LMECCCRYGMVDKALEIFVYSTQLGVVIPQDSVYRML-NSLIGS 194
Query: 208 NRVDDGATYFRKMVDSGLRPN-LAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-LKMDDAS 265
+RVD A +F K+ G+ P+ ++ + ++ L G + +A F +++++ ++ S
Sbjct: 195 DRVDLIADHFDKLCRGGIEPSGVSAHGFVLDALFCKGEVTKALDFHRLVMERGFRVGIVS 254
Query: 266 YKFMMKALSDGGKLDEI---LEIVGGILDDGG----IEFSEELQEFVK-GELSKEGREEE 317
++K LS +D+I ++ +LD G + F + F K GE+ R +
Sbjct: 255 CNKVLKGLS----VDQIEVASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMD---RAFD 307
Query: 318 VVKLMEKK 325
+ K+ME++
Sbjct: 308 LFKVMEQR 315
>sp|Q9LR67|PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560,
mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2
SV=1
Length = 660
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/323 (26%), Positives = 151/323 (46%), Gaps = 11/323 (3%)
Query: 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME 63
KG P +S ++ G ++G + + +FE + K G + +Y L+ GY G
Sbjct: 321 KGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRK--GSKPNVAIYTVLIDGYAKSGSV 378
Query: 64 EEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123
E+A+ + + E K V + V++ LC NG+ +EAL F + + LA+N
Sbjct: 379 EDAIRLLHRMIDEG--FKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDG-----LAIN 431
Query: 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183
++ + DG GR +A +F +M E C+ D+ +N LID K+ + EA L+
Sbjct: 432 SMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFK 491
Query: 184 EMSDK-GVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQV 242
M ++ G + YTY +L+ F+ +R ++ + M+D G+ P A + L L
Sbjct: 492 RMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLS 551
Query: 243 GMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQ 302
G + A D + + DA+ + M+ L G++ E ++ GI + G E ++
Sbjct: 552 GKVARACKILDELAPMGVILDAACEDMINTLCKAGRIKEACKLADGITERGR-EVPGRIR 610
Query: 303 EFVKGELSKEGREEEVVKLMEKK 325
+ L K G+ + +KLM K
Sbjct: 611 TVMINALRKVGKADLAMKLMHSK 633
Score = 102 bits (254), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 146/320 (45%), Gaps = 16/320 (5%)
Query: 9 DPVVYSY--LMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEA 66
+P +Y+Y LM G V D R+FE ++ G + D V Y +++KGY G ++A
Sbjct: 219 EPTLYTYNFLMNGLVSAMFVDSAERVFEVMES--GRIKPDIVTYNTMIKGYCKAGQTQKA 276
Query: 67 MECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRM--KNEHNPPKRLAVNL 124
ME + E + + +++ A + F + L+ M K PP
Sbjct: 277 MEKLRDM--ETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPH------ 328
Query: 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGE 184
+F+++ G C +G+ + VF M P+ + LID K+G + +A L
Sbjct: 329 -AFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHR 387
Query: 185 MSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244
M D+G PD TY ++++ + RV++ YF GL N Y+ L+ L + G
Sbjct: 388 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGR 447
Query: 245 LDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQE 303
+DEA+ F+ M +K D Y ++ A + K+DE + + + ++ G + +
Sbjct: 448 VDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYT 507
Query: 304 FVKGELSKEGREEEVVKLME 323
+ + KE R EE +KL +
Sbjct: 508 ILLSGMFKEHRNEEALKLWD 527
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 109/243 (44%), Gaps = 13/243 (5%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M +GF D V YS ++ G ++G + F + G+ + + Y SL+ G
Sbjct: 388 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTC--RFDGLAINSMFYSSLIDGLGKA 445
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
G +EA + E + E + + N+++DA + K DEA+ LF RM+ E +
Sbjct: 446 GRVDEAERLFEE-MSEKGCTR-DSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQ-- 501
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
+ ++ ++ G + R ++A++++ M + +P F L LC +G +A A +
Sbjct: 502 --TVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACK 559
Query: 181 LYGEMSDKGVNPDEYTYGLLMDAC-----FEVNRVDDGATYFRKMVDSGLRPNLAVYNRL 235
+ E++ GV D ++ C E ++ DG T + V +R + R
Sbjct: 560 ILDELAPMGVILDAACEDMINTLCKAGRIKEACKLADGITERGREVPGRIRTVMINALRK 619
Query: 236 VGK 238
VGK
Sbjct: 620 VGK 622
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 9/177 (5%)
Query: 157 PDTLSFNN-LIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGAT 215
P T+S N LI K GM+ E ++ +M + G+ P YTY LM+ VD
Sbjct: 184 PMTVSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAER 243
Query: 216 YFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEA-KSFFDIMVKKLKMDDASYKFMMKAL- 273
F M ++P++ YN ++ + G +A + D+ + + D +Y M++A
Sbjct: 244 VFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACY 303
Query: 274 --SDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKERE 328
SD G + + +D+ GI+ V G L KEG+ E + E R+
Sbjct: 304 ADSDFGSCVALYQ----EMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRK 356
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/238 (18%), Positives = 98/238 (41%), Gaps = 41/238 (17%)
Query: 120 LAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAE 179
+ + + N + + G ++ + V+RKM E P ++N L++ L + AE
Sbjct: 183 FPMTVSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAE 242
Query: 180 ELYGEMSDKGVNPDEYTYG-----------------------------------LLMDAC 204
++ M + PD TY ++ AC
Sbjct: 243 RVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQAC 302
Query: 205 FEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-LKMDD 263
+ + +++M + G++ ++ ++G L + G L+E + F+ M++K K +
Sbjct: 303 YADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNV 362
Query: 264 ASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEF--VKGELSKEGREEEVV 319
A Y ++ + G +++ + ++ ++D+G F ++ + V L K GR EE +
Sbjct: 363 AIYTVLIDGYAKSGSVEDAIRLLHRMIDEG---FKPDVVTYSVVVNGLCKNGRVEEAL 417
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 127/254 (50%), Gaps = 9/254 (3%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEE 64
G VA+ Y+ L+ G ++G F ++E+++E GV + Y +M G +
Sbjct: 228 GLVANERTYTVLINGLFKNGVKKQGFEMYEKMQED--GVFPNLYTYNCVMNQLCKDGRTK 285
Query: 65 EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124
+A + ++E V + V N+++ LC K +EA K+ D+MK++ P NL
Sbjct: 286 DAFQVFDEM--RERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINP-----NL 338
Query: 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGE 184
++N + DG+CG G+ A+ + R + SP +++N L+ C+ G + A ++ E
Sbjct: 339 ITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKE 398
Query: 185 MSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244
M ++G+ P + TY +L+D + ++ M + GL P++ Y+ L+ G
Sbjct: 399 MEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQ 458
Query: 245 LDEAKSFFDIMVKK 258
++EA F MV+K
Sbjct: 459 MNEASRLFKSMVEK 472
Score = 81.6 bits (200), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 106/207 (51%), Gaps = 7/207 (3%)
Query: 88 NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVF 147
N +L + + F++ F+ K+ ++ +++ SF ++ G C G + + ++
Sbjct: 133 NYLLTFVVGSSSFNQWWSFFNENKS------KVVLDVYSFGILIKGCCEAGEIEKSFDLL 186
Query: 148 RKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEV 207
++ E+ SP+ + + LID CK G + +A++L+ EM G+ +E TY +L++ F+
Sbjct: 187 IELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKN 246
Query: 208 NRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-LKMDDASY 266
G + KM + G+ PNL YN ++ +L + G +A FD M ++ + + +Y
Sbjct: 247 GVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTY 306
Query: 267 KFMMKALSDGGKLDEILEIVGGILDDG 293
++ L KL+E ++V + DG
Sbjct: 307 NTLIGGLCREMKLNEANKVVDQMKSDG 333
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 97/202 (48%), Gaps = 13/202 (6%)
Query: 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME 63
+G V Y+ L+ GF R GD+ G ++ +E++E+ G+ V Y L+ +
Sbjct: 367 RGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEER--GIKPSKVTYTILIDTFARSDNM 424
Query: 64 EEAMECY--NEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLA 121
E+A++ E +G V +V ++ C G+ +EA +LF M ++ P +
Sbjct: 425 EKAIQLRLSMEELGLVPDVHTYSV----LIHGFCIKGQMNEASRLFKSMVEKNCEPNEVI 480
Query: 122 VNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEEL 181
+N M GYC +G A+++ ++M E +P+ S+ +I+ LCK EAE L
Sbjct: 481 -----YNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERL 535
Query: 182 YGEMSDKGVNPDEYTYGLLMDA 203
+M D G++P L+ A
Sbjct: 536 VEKMIDSGIDPSTSILSLISRA 557
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 107/227 (47%), Gaps = 9/227 (3%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEE 64
G + + Y+ L+ GF G L +LK + G+ V Y L+ G+ KG
Sbjct: 333 GINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSR--GLSPSLVTYNILVSGFCRKGDTS 390
Query: 65 EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124
A + E E +K S V ++D + ++A++L R+ E L ++
Sbjct: 391 GAAKMVKEM--EERGIKPSKVTYTILIDTFARSDNMEKAIQL--RLSMEE---LGLVPDV 443
Query: 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGE 184
+++V+ G+C +G+ +A +F+ M E C P+ + +N +I CK G A +L E
Sbjct: 444 HTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKE 503
Query: 185 MSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAV 231
M +K + P+ +Y +++ + + + KM+DSG+ P+ ++
Sbjct: 504 MEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPSTSI 550
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/368 (24%), Positives = 166/368 (45%), Gaps = 28/368 (7%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
MF+KG V + V Y+ L+ G G D L E + + + V YG+L+ G +
Sbjct: 283 MFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVS--SKCIPNDVTYGTLINGLVKQ 340
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
+A+ + E ++ + ++ L GK +EA+ L+ +M + P
Sbjct: 341 RRATDAVRLLSSM--EERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKP--- 395
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
N+ ++V+ DG C +G+ +A E+ +M C P+ ++++L+ K G+ EA +
Sbjct: 396 --NIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQ 453
Query: 181 LYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240
++ EM G + +++ Y +L+D V RV + + KM+ G++P+ Y+ ++ L
Sbjct: 454 VWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLC 513
Query: 241 QVGMLDEAKSFFDIMV----KKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDG--- 293
+G +D A + M+ K + D +Y ++ L + ++++ +LD G
Sbjct: 514 GIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDP 573
Query: 294 ----GIEFSEELQEFVKGELSKEGR---EEEVVKLMEKKEREKAEAKAREAEAAE--AAK 344
F L E K +GR EE VV+L+ K++R E + A K
Sbjct: 574 DVITCNTFLNTLSE--KSNSCDKGRSFLEELVVRLL-KRQRVSGACTIVEVMLGKYLAPK 630
Query: 345 RSARAAIA 352
S A I
Sbjct: 631 TSTWAMIV 638
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 141/287 (49%), Gaps = 10/287 (3%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEE 64
G PV+Y+ L+ G + GD V +L + + L G V + V Y +L+ G +KG +
Sbjct: 252 GCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNM--FLKGCVPNEVTYNTLIHGLCLKGKLD 309
Query: 65 EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124
+A+ V +S + V ++++ L + +A++L M+ + +N
Sbjct: 310 KAVSLLERMV--SSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEE-----RGYHLNQ 362
Query: 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGE 184
++V+ G +G+ ++A+ ++RKM E C P+ + ++ L+D LC+ G EA+E+
Sbjct: 363 HIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNR 422
Query: 185 MSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244
M G P+ YTY LM F+ ++ +++M +G N Y+ L+ L VG
Sbjct: 423 MIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGR 482
Query: 245 LDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDEILEIVGGIL 290
+ EA + M+ +K D +Y ++K L G +D L++ +L
Sbjct: 483 VKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEML 529
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 124/258 (48%), Gaps = 13/258 (5%)
Query: 29 VFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANN 88
VFR E K + DG Y +LM G + +EA+ +E E S S V N
Sbjct: 209 VFRGMPERK-----CLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSP--SPVIYN 261
Query: 89 SVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFR 148
++D LC G KL D M + P N ++N + G C +G+ A+ +
Sbjct: 262 VLIDGLCKKGDLTRVTKLVDNMFLKGCVP-----NEVTYNTLIHGLCLKGKLDKAVSLLE 316
Query: 149 KMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVN 208
+M +C P+ +++ LI+ L K +A L M ++G + +++ Y +L+ F+
Sbjct: 317 RMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEG 376
Query: 209 RVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDA-SYK 267
+ ++ + +RKM + G +PN+ VY+ LV L + G +EAK + M+ + +A +Y
Sbjct: 377 KAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYS 436
Query: 268 FMMKALSDGGKLDEILEI 285
+MK G +E +++
Sbjct: 437 SLMKGFFKTGLCEEAVQV 454
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 105/231 (45%), Gaps = 10/231 (4%)
Query: 101 DEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIE----VFRKMGEYRCS 156
D+A+ LF RM +E R ++ SFN + + +G + +E V S
Sbjct: 129 DKAVDLFHRMVDEF----RCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNIS 184
Query: 157 PDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATY 216
P+ LSFN +I LCK + A E++ M ++ PD YTY LMD + R+D+
Sbjct: 185 PNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLL 244
Query: 217 FRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIM-VKKLKMDDASYKFMMKALSD 275
+M G P+ +YN L+ L + G L D M +K ++ +Y ++ L
Sbjct: 245 LDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCL 304
Query: 276 GGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKE 326
GKLD+ + ++ ++ I + G L K+ R + V+L+ E
Sbjct: 305 KGKLDKAVSLLERMVSSKCIPNDVTYGTLING-LVKQRRATDAVRLLSSME 354
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 153/345 (44%), Gaps = 75/345 (21%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEE 64
G D Y+ L++G+ + D D F++F E+ L G + V Y L+ G + +
Sbjct: 248 GLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEM--PLKGCRRNEVAYTHLIHGLCVARRID 305
Query: 65 EAM---------ECY-------------------NEAVG-----ENSSVKMSAVANNSVL 91
EAM EC+ +EA+ E + +K + ++
Sbjct: 306 EAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLI 365
Query: 92 DALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIE------ 145
D+LC+ KF++A +L +M K L N+ ++N + +GYC +G +DA++
Sbjct: 366 DSLCSQCKFEKARELLGQMLE-----KGLMPNVITYNALINGYCKRGMIEDAVDVVELME 420
Query: 146 ----------------------------VFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAE 177
V KM E + PD +++N+LID C++G
Sbjct: 421 SRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDS 480
Query: 178 AEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVG 237
A L M+D+G+ PD++TY ++D+ + RV++ F + G+ PN+ +Y L+
Sbjct: 481 AYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALID 540
Query: 238 KLVQVGMLDEAKSFFDIMVKKLKMDDA-SYKFMMKALSDGGKLDE 281
+ G +DEA + M+ K + ++ ++ ++ L GKL E
Sbjct: 541 GYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKE 585
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 133/288 (46%), Gaps = 15/288 (5%)
Query: 33 FEELKEKLG-----GVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVAN 87
FE+ +E LG G++ + + Y +L+ GY +GM E+A++ + E+ + +
Sbjct: 374 FEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVE--LMESRKLSPNTRTY 431
Query: 88 NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVF 147
N ++ C + +A+ + ++M +++ ++ ++N + DG C G F A +
Sbjct: 432 NELIKGYCKSN-VHKAMGVLNKMLE-----RKVLPDVVTYNSLIDGQCRSGNFDSAYRLL 485
Query: 148 RKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEV 207
M + PD ++ ++ID LCK+ + EA +L+ + KGVNP+ Y L+D +
Sbjct: 486 SLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKA 545
Query: 208 NRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-LKMDDASY 266
+VD+ KM+ PN +N L+ L G L EA + MVK L+ ++
Sbjct: 546 GKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTD 605
Query: 267 KFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGR 314
++ L G D +L G + F++ +EGR
Sbjct: 606 TILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQ-TYCREGR 652
Score = 92.0 bits (227), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 116/255 (45%), Gaps = 12/255 (4%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M + + D V Y+ L+ G R G+ D +RL + ++ G+V D Y S++
Sbjct: 453 MLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDR--GLVPDQWTYTSMIDSLCKS 510
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
EEA + ++ E V + V +++D C GK DEA + ++M +++ P L
Sbjct: 511 KRVEEACDLFDSL--EQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSL 568
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
+FN + G C G+ K+A + KM + P + LI +L K+G A
Sbjct: 569 -----TFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYS 623
Query: 181 LYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240
+ +M G PD +TY + R+ D KM ++G+ P+L Y+ L+
Sbjct: 624 RFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYG 683
Query: 241 QVGMLDEAKSFFDIM 255
+G + A FD++
Sbjct: 684 DLGQTNFA---FDVL 695
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 129/280 (46%), Gaps = 16/280 (5%)
Query: 12 VYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYN 71
Y+ L+ R G D + +++ E+ E V + Y ++ GY G EEA + +
Sbjct: 185 CYNTLLNSLARFGLVDEMKQVYMEMLE--DKVCPNIYTYNKMVNGYCKLGNVEEANQYVS 242
Query: 72 EAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMA 131
+ V + + S++ C D A K+F+ M P K N ++ +
Sbjct: 243 KIV--EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEM-----PLKGCRRNEVAYTHLI 295
Query: 132 DGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVN 191
G C R +A+++F KM + C P ++ LI LC + +EA L EM + G+
Sbjct: 296 HGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIK 355
Query: 192 PDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSF 251
P+ +TY +L+D+ + + +M++ GL PN+ YN L+ + GM+++A
Sbjct: 356 PNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDV 415
Query: 252 FDIM-VKKLKMDDASYKFMMKALSDG------GKLDEILE 284
++M +KL + +Y ++K G L+++LE
Sbjct: 416 VELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLE 455
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 105/243 (43%), Gaps = 31/243 (12%)
Query: 70 YNEAVGENSSVKMSAVANNSVLDALCNNG-----------------KFDEALKLFD---R 109
++ + +N K S + S+L L NNG +AL + D +
Sbjct: 109 FSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSCDSVGDALYVLDLCRK 168
Query: 110 MKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQL 169
M + + + +G +N + + G + +V+ +M E + P+ ++N +++
Sbjct: 169 MNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGY 228
Query: 170 CKNGMLAEAEELYGEMSDKGVNPDEYTY-GLLMDACFEVNRVDDGATYFRKMVDSGLRPN 228
CK G + EA + ++ + G++PD +TY L+M C + +D F +M G R N
Sbjct: 229 CKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYC-QRKDLDSAFKVFNEMPLKGCRRN 287
Query: 229 LAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDA-----SYKFMMKALSDGGKLDEIL 283
Y L+ L +DEA F K+K D+ +Y ++K+L + E L
Sbjct: 288 EVAYTHLIHGLCVARRIDEAMDLF----VKMKDDECFPTVRTYTVLIKSLCGSERKSEAL 343
Query: 284 EIV 286
+V
Sbjct: 344 NLV 346
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 115/294 (39%), Gaps = 25/294 (8%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGY--- 57
M G D Y+ + + R+G + +++E GV D Y SL+KGY
Sbjct: 628 MLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRE--NGVSPDLFTYSSLIKGYGDL 685
Query: 58 --------FMKGME----EEAMECYNEAVGENSSVKM-SAVANNSVLDALCNNGKFDEAL 104
+K M E + + + +K + L A+ N +FD +
Sbjct: 686 GQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVV 745
Query: 105 KLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYR-CSPDTLSFN 163
+L ++M P N S+ + G C G + A +VF M SP L FN
Sbjct: 746 ELLEKMVEHSVTP-----NAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFN 800
Query: 164 NLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDS 223
L+ CK EA ++ +M G P + +L+ ++ + G + F+ ++
Sbjct: 801 ALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQC 860
Query: 224 GLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-LKMDDASYKFMMKALSDG 276
G + + ++ + + G+++ F++M K K +Y +++ D
Sbjct: 861 GYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIEGPPDS 914
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 137/279 (49%), Gaps = 11/279 (3%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEE 64
G+ D V S L+ GF + L +++E G D V+Y +++ G G+
Sbjct: 134 GYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEM--GFRPDVVIYNTIIDGSCKIGLVN 191
Query: 65 EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124
+A+E ++ E V+ AV NS++ LC +G++ +A +L M P N+
Sbjct: 192 DAVELFDRM--ERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVP-----NV 244
Query: 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGE 184
+F + D + +G+F +A++++ +M PD ++N+LI+ LC +G + EA+++
Sbjct: 245 ITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDL 304
Query: 185 MSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244
M KG PD TY L++ + RVD+G FR+M GL + YN ++ Q G
Sbjct: 305 MVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGR 364
Query: 245 LDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEIL 283
D A+ F M + + +Y ++ L ++++ L
Sbjct: 365 PDAAQEIFSRMDSRPNI--RTYSILLYGLCMNWRVEKAL 401
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 117/245 (47%), Gaps = 8/245 (3%)
Query: 42 GVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFD 101
G D V SL+ G+ +A++ ++ E + V N+++D C G +
Sbjct: 134 GYEPDVVTVSSLINGFCQGNRVFDAIDLVSKM--EEMGFRPDVVIYNTIIDGSCKIGLVN 191
Query: 102 EALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLS 161
+A++LFDRM E + + AV ++N + G C GR+ DA + R M P+ ++
Sbjct: 192 DAVELFDRM--ERDGVRADAV---TYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVIT 246
Query: 162 FNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMV 221
F +ID K G +EA +LY EM+ + V+PD +TY L++ RVD+ MV
Sbjct: 247 FTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMV 306
Query: 222 DSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLD 280
G P++ YN L+ + +DE F M ++ L D +Y +++ G+ D
Sbjct: 307 TKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPD 366
Query: 281 EILEI 285
EI
Sbjct: 367 AAQEI 371
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 122/262 (46%), Gaps = 16/262 (6%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M ++ V + + ++ ++ FV++G +L+EE+ + V D Y SL+ G M
Sbjct: 235 MVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRC--VDPDVFTYNSLINGLCMH 292
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
G +EA + + V + V N++++ C + + DE KLF M + L
Sbjct: 293 GRVDEAKQMLDLMVTKGCLP--DVVTYNTLINGFCKSKRVDEGTKLFREMAQ-----RGL 345
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
+ ++N + GY GR A E+F +M P+ +++ L+ LC N + +A
Sbjct: 346 VGDTITYNTIIQGYFQAGRPDAAQEIFSRMDS---RPNIRTYSILLYGLCMNWRVEKALV 402
Query: 181 LYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240
L+ M + D TY +++ ++ V+D FR + GL+P++ Y ++
Sbjct: 403 LFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFC 462
Query: 241 QVGMLDEAKSFFDIMVKKLKMD 262
+ D++ D++ +K++ D
Sbjct: 463 RKRQWDKS----DLLYRKMQED 480
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 99/227 (43%), Gaps = 47/227 (20%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M KG + D V Y+ L+ GF + D +LF E+ ++ G+V D + Y ++++GYF
Sbjct: 305 MVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQR--GLVGDTITYNTIIQGYF-- 360
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
G+ D A ++F RM + P
Sbjct: 361 -----------------------------------QAGRPDAAQEIFSRM--DSRP---- 379
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
N+ +++++ G C R + A+ +F M + D ++N +I +CK G + +A +
Sbjct: 380 --NIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWD 437
Query: 181 LYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRP 227
L+ +S KG+ PD +Y ++ + D +RKM + GL P
Sbjct: 438 LFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 484
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 96/204 (47%), Gaps = 6/204 (2%)
Query: 83 SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKD 142
S V + VL + + +D + LF H + +L S+N++ + C RF
Sbjct: 68 SIVDFSKVLSKIAKSKNYDLVISLF-----HHMEVCGIGHDLYSYNIVINCLCRCSRFVI 122
Query: 143 AIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMD 202
A+ V KM ++ PD ++ ++LI+ C+ + +A +L +M + G PD Y ++D
Sbjct: 123 ALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIID 182
Query: 203 ACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGML-DEAKSFFDIMVKKLKM 261
++ V+D F +M G+R + YN LV L G D A+ D++++ +
Sbjct: 183 GSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVP 242
Query: 262 DDASYKFMMKALSDGGKLDEILEI 285
+ ++ ++ GK E +++
Sbjct: 243 NVITFTAVIDVFVKEGKFSEAMKL 266
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 93/225 (41%), Gaps = 45/225 (20%)
Query: 144 IEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDA 203
I++F KM + R P + F+ ++ ++ K+ L+ M G+ D Y+Y ++++
Sbjct: 54 IDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINC 113
Query: 204 CFEV-----------------------------------NRVDDGATYFRKMVDSGLRPN 228
NRV D KM + G RP+
Sbjct: 114 LCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPD 173
Query: 229 LAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDE----IL 283
+ +YN ++ ++G++++A FD M + ++ D +Y ++ L G+ + +
Sbjct: 174 VVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMR 233
Query: 284 EIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKERE 328
++V + I F+ + FV KEG+ E +KL E+ R
Sbjct: 234 DMVMRDIVPNVITFTAVIDVFV-----KEGKFSEAMKLYEEMTRR 273
>sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010
OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1
Length = 704
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 141/296 (47%), Gaps = 12/296 (4%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M +GF + ++ L+ G R+ + L E++ ++ D Y ++++G F +
Sbjct: 133 MLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRR--NSLMPDVFSYNTVIRG-FCE 189
Query: 61 GME-EEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKR 119
G E E+A+E NE G S S V ++DA C GK DEA+ MK
Sbjct: 190 GKELEKALELANEMKGSGCS--WSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMG----- 242
Query: 120 LAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAE 179
L +L + + G+C G +F ++ E SP +++N LI CK G L EA
Sbjct: 243 LEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEAS 302
Query: 180 ELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKL 239
E++ M ++GV P+ YTY L+D V + + M++ PN YN ++ KL
Sbjct: 303 EIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKL 362
Query: 240 VQVGMLDEAKSFFDIMVK-KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGG 294
+ G++ +A ++M K + + D+ +Y ++ L G LDE +++ +L D
Sbjct: 363 CKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSS 418
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 134/287 (46%), Gaps = 14/287 (4%)
Query: 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAME 68
D + Y+ L+ G GD D +L + + D + Y +L+ G + +A++
Sbjct: 386 DNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALD 445
Query: 69 CYNEAVGENSSVKMSA---VANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLG 125
Y+ V K+ A V N +L++ G ++A++L+ ++ + ++ N
Sbjct: 446 IYDLLVE-----KLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDS-----KIVRNSD 495
Query: 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEM 185
++ M DG+C G A + KM P +N L+ LCK G L +A L+ EM
Sbjct: 496 TYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEM 555
Query: 186 SDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGML 245
PD ++ +++D + + + M +GL P+L Y++L+ + +++G L
Sbjct: 556 QRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYL 615
Query: 246 DEAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDEILEIVGGILD 291
DEA SFFD MV + D ++K G+ D++ E+V ++D
Sbjct: 616 DEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKKLVD 662
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 78/205 (38%), Gaps = 37/205 (18%)
Query: 120 LAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAE 179
A N+ + N++ G C A+ + R+M PD S+N +I C+ L +A
Sbjct: 138 FAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKAL 197
Query: 180 ELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKL 239
EL EM G + T+G+L+DA
Sbjct: 198 ELANEMKGSGCSWSLVTWGILIDA-----------------------------------F 222
Query: 240 VQVGMLDEAKSFFDIM-VKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFS 298
+ G +DEA F M L+ D Y +++ D G+LD + +L+ G +
Sbjct: 223 CKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCA 282
Query: 299 EELQEFVKGELSKEGREEEVVKLME 323
++G K G+ +E ++ E
Sbjct: 283 ITYNTLIRG-FCKLGQLKEASEIFE 306
>sp|Q9SSR4|PPR77_ARATH Pentatricopeptide repeat-containing protein At1g52620
OS=Arabidopsis thaliana GN=At1g52620 PE=2 SV=1
Length = 819
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 120/239 (50%), Gaps = 10/239 (4%)
Query: 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME 63
+G D +Y+ LM G + G LF E+ ++ ++ D VY +L+ G+ G
Sbjct: 444 RGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDR--NILPDAYVYATLIDGFIRSGDF 501
Query: 64 EEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123
+EA + ++ +V VK+ V +N+++ C +G DEAL +RM EH P +
Sbjct: 502 DEARKVFSLSV--EKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKF--- 556
Query: 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183
+++ + DGY Q AI++FR M + +C P+ +++ +LI+ C G AEE +
Sbjct: 557 --TYSTIIDGYVKQQDMATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMAEETFK 614
Query: 184 EMSDKGVNPDEYTYGLLMDACF-EVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQ 241
EM + + P+ TY L+ + E + ++ Y+ M+ + PN +N L+ V+
Sbjct: 615 EMQLRDLVPNVVTYTTLIRSLAKESSTLEKAVYYWELMMTNKCVPNEVTFNCLLQGFVK 673
Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 128/282 (45%), Gaps = 10/282 (3%)
Query: 3 VKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGM 62
+KGF+ + ++ GF ++GD RL E+KE+ G+ +++ + G
Sbjct: 268 LKGFMPTLETFGTMINGFCKEGDFVASDRLLSEVKER--GLRVSVWFLNNIIDAKYRHGY 325
Query: 63 EEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAV 122
+ + E + + K N +++ LC GK + A+ D + P L
Sbjct: 326 KVDPAESIGWIIANDC--KPDVATYNILINRLCKEGKKEVAVGFLDEASKKGLIPNNL-- 381
Query: 123 NLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELY 182
S+ + YC + A ++ +M E C PD +++ LI L +G + +A +
Sbjct: 382 ---SYAPLIQAYCKSKEYDIASKLLLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMK 438
Query: 183 GEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQV 242
++ D+GV+PD Y +LM + R F +M+D + P+ VY L+ ++
Sbjct: 439 VKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRS 498
Query: 243 GMLDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDEIL 283
G DEA+ F + V+K +K+D + M+K G LDE L
Sbjct: 499 GDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEAL 540
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 137/280 (48%), Gaps = 12/280 (4%)
Query: 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME 63
KG + + V Y+ ++ G+ + GD + + +F+ELK L G + +G+++ G+ +G
Sbjct: 234 KGCIPNIVFYNTIIGGYCKLGDIENAYLVFKELK--LKGFMPTLETFGTMINGFCKEGDF 291
Query: 64 EEAMECYNEAVGENSSVKMSAVANNSVLDALCNNG-KFDEALKLFDRMKNEHNPPKRLAV 122
+ +E + +++S N+++DA +G K D A + + N+ P
Sbjct: 292 VASDRLLSEV--KERGLRVSVWFLNNIIDAKYRHGYKVDPAESIGWIIANDCKP------ 343
Query: 123 NLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELY 182
++ ++N++ + C +G+ + A+ + + P+ LS+ LI CK+ A +L
Sbjct: 344 DVATYNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLL 403
Query: 183 GEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQV 242
+M+++G PD TYG+L+ +DD K++D G+ P+ A+YN L+ L +
Sbjct: 404 LQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKT 463
Query: 243 GMLDEAKSFFDIMVKKLKMDDA-SYKFMMKALSDGGKLDE 281
G AK F M+ + + DA Y ++ G DE
Sbjct: 464 GRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDE 503
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 127/275 (46%), Gaps = 28/275 (10%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M + + D VY+ L+ GF+R GD D ++F EK GV D V + +++KG+
Sbjct: 476 MLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEK--GVKVDVVHHNAMIKGFCRS 533
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRM-KNEHNPPKR 119
GM +EA+ C N E+ + ++++D A+K+F M KN+ P
Sbjct: 534 GMLDEALACMNRMNEEH--LVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKCKP--- 588
Query: 120 LAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAE 179
N+ ++ + +G+C QG FK A E F++M P+ +++ LI L K E
Sbjct: 589 ---NVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLVPNVVTYTTLIRSLAKESSTLEKA 645
Query: 180 ELYGE--MSDKGVNPDEYTYGLLMDACF-----EVNRVDDGAT---------YFRKMVDS 223
Y E M++K V P+E T+ L+ +V DG+ +F +M
Sbjct: 646 VYYWELMMTNKCV-PNEVTFNCLLQGFVKKTSGKVLAEPDGSNHGQSSLFSEFFHRMKSD 704
Query: 224 GLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK 258
G + A YN + L GM+ A F D MVKK
Sbjct: 705 GWSDHAAAYNSALVCLCVHGMVKTACMFQDKMVKK 739
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 125/272 (45%), Gaps = 10/272 (3%)
Query: 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME 63
KG + + + Y+ L+ + + + D +L ++ E+ G D V YG L+ G + G
Sbjct: 374 KGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMAER--GCKPDIVTYGILIHGLVVSGHM 431
Query: 64 EEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123
++A+ + + + V A N ++ LC G+F A LF M + + P
Sbjct: 432 DDAVNMKVKLI--DRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYV-- 487
Query: 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183
+ + DG+ G F +A +VF E D + N +I C++GML EA
Sbjct: 488 ---YATLIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMN 544
Query: 184 EMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG 243
M+++ + PD++TY ++D + + FR M + +PN+ Y L+ G
Sbjct: 545 RMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQG 604
Query: 244 MLDEA-KSFFDIMVKKLKMDDASYKFMMKALS 274
A ++F ++ ++ L + +Y ++++L+
Sbjct: 605 DFKMAEETFKEMQLRDLVPNVVTYTTLIRSLA 636
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 10/177 (5%)
Query: 86 ANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIE 145
A +S L L F+E + ++NE+ + + + + + Y G A+E
Sbjct: 101 ACSSFLKLLARYRIFNEIEDVLGNLRNEN-----VKLTHEALSHVLHAYAESGSLSKAVE 155
Query: 146 VFRKMGE-YRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDAC 204
++ + E Y PD ++ N+L+ L K+ L +A ++Y EM D+G + D Y+ +L+
Sbjct: 156 IYDYVVELYDSVPDVIACNSLLSLLVKSRRLGDARKVYDEMCDRGDSVDNYSTCILVKGM 215
Query: 205 FEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKM 261
+V+ G G PN+ YN ++G ++G ++ A F K+LK+
Sbjct: 216 CNEGKVEVGRKLIEGRWGKGCIPNIVFYNTIIGGYCKLGDIENAYLVF----KELKL 268
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 111/256 (43%), Gaps = 46/256 (17%)
Query: 76 ENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNP-PKRLAVN----------- 123
N +VK++ A + VL A +G +A++++D + ++ P +A N
Sbjct: 126 RNENVKLTHEALSHVLHAYAESGSLSKAVEIYDYVVELYDSVPDVIACNSLLSLLVKSRR 185
Query: 124 LG-------------------SFNVMADGYCGQGRFKDAIEVFRKMGEYR----CSPDTL 160
LG S ++ G C +G+ +EV RK+ E R C P+ +
Sbjct: 186 LGDARKVYDEMCDRGDSVDNYSTCILVKGMCNEGK----VEVGRKLIEGRWGKGCIPNIV 241
Query: 161 SFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDA-CFEVNRVDDGATYFRK 219
+N +I CK G + A ++ E+ KG P T+G +++ C E + V +
Sbjct: 242 FYNTIIGGYCKLGDIENAYLVFKELKLKGFMPTLETFGTMINGFCKEGDFVASDRL-LSE 300
Query: 220 MVDSGLRPNLAVYNRLVGKLVQVGM-LDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGK 278
+ + GLR ++ N ++ + G +D A+S I+ K D A+Y ++ L GK
Sbjct: 301 VKERGLRVSVWFLNNIIDAKYRHGYKVDPAESIGWIIANDCKPDVATYNILINRLCKEGK 360
Query: 279 LDEILEIVGGILDDGG 294
E+ G LD+
Sbjct: 361 ----KEVAVGFLDEAS 372
>sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630
OS=Arabidopsis thaliana GN=At2g32630 PE=3 SV=1
Length = 624
Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 133/279 (47%), Gaps = 10/279 (3%)
Query: 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME 63
+G +D VY+ L+ R G+ F LF+EL EK G+ YG+L+ G G
Sbjct: 323 RGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEK--GLSPSSYTYGALIDGVCKVGEM 380
Query: 64 EEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123
A NE ++ V ++ V N+++D C G DEA ++D M+ K +
Sbjct: 381 GAAEILMNEM--QSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQ-----KGFQAD 433
Query: 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183
+ + N +A + R+ +A + +M E T+S+ NLID CK G + EA+ L+
Sbjct: 434 VFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFV 493
Query: 184 EMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG 243
EMS KGV P+ TY +++ A + ++ + M +G+ P+ Y L+
Sbjct: 494 EMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIHGECIAD 553
Query: 244 MLDEAKSFFDIM-VKKLKMDDASYKFMMKALSDGGKLDE 281
+DEA F M +K L + +Y M+ LS GK DE
Sbjct: 554 NVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDE 592
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 110/243 (45%), Gaps = 7/243 (2%)
Query: 80 VKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGR 139
+K A N++++A F + MK + + N ++ ++ + G+
Sbjct: 255 IKPEAYTYNTIINAYVKQRDFSGVEGVLKVMKKDG-----VVYNKVTYTLLMELSVKNGK 309
Query: 140 FKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGL 199
DA ++F +M E D + +LI C+ G + A L+ E+++KG++P YTYG
Sbjct: 310 MSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGA 369
Query: 200 LMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK- 258
L+D +V + +M G+ V+N L+ + GM+DEA +D+M +K
Sbjct: 370 LIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKG 429
Query: 259 LKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEV 318
+ D + + + + DE + + ++ +GG++ S + KEG EE
Sbjct: 430 FQADVFTCNTIASCFNRLKRYDEAKQWLFRMM-EGGVKLSTVSYTNLIDVYCKEGNVEEA 488
Query: 319 VKL 321
+L
Sbjct: 489 KRL 491
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 95/225 (42%), Gaps = 15/225 (6%)
Query: 31 RLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSV 90
R F E++ L VV+DG F K EE + + + V
Sbjct: 111 RRFNEMRSLLNSVVNDG----------FYKRPVEELGSAMVDCDISEEKFEFFEKFFDLV 160
Query: 91 LDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKM 150
+NG F+E L++FD M K L+++ S V + R +E+FR+M
Sbjct: 161 FRVYVDNGMFEEGLRVFDYM-----VKKGLSIDERSCIVFLVAAKKRRRIDLCLEIFRRM 215
Query: 151 GEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRV 210
+ S +++ LC+ G + ++++L E S KG+ P+ YTY +++A +
Sbjct: 216 VDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDF 275
Query: 211 DDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIM 255
+ M G+ N Y L+ V+ G + +A+ FD M
Sbjct: 276 SGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEM 320
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLM 54
M +KG + V Y+ ++ G + G SD F L++E+K K G D VY +L+
Sbjct: 565 MGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEMKRK--GYTIDNKVYTALI 616
>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060
OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1
Length = 687
Score = 108 bits (270), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 147/325 (45%), Gaps = 12/325 (3%)
Query: 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAME 68
D YS L+ G G+ D +F EL E+ + D V Y +++ G+ G +E++E
Sbjct: 289 DLYTYSSLIHGLCDAGNVDKAESVFNELDERKASI--DVVTYNTMLGGFCRCGKIKESLE 346
Query: 69 CYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFN 128
+ +NS ++ V+ N ++ L NGK DEA ++ M P K A + ++
Sbjct: 347 LWRIMEHKNS---VNIVSYNILIKGLLENGKIDEATMIWRLM-----PAKGYAADKTTYG 398
Query: 129 VMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDK 188
+ G C G A+ V +++ D ++ ++ID LCK L EA L EMS
Sbjct: 399 IFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKH 458
Query: 189 GVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEA 248
GV + + L+ +R+ + + + R+M +G RP + YN L+ L + G EA
Sbjct: 459 GVELNSHVCNALIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEA 518
Query: 249 KSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKG 307
+F M++ K D +Y ++ L K+D LE+ L G+E + +
Sbjct: 519 SAFVKEMLENGWKPDLKTYSILLCGLCRDRKIDLALELWHQFL-QSGLETDVMMHNILIH 577
Query: 308 ELSKEGREEEVVKLMEKKEREKAEA 332
L G+ ++ + +M E A
Sbjct: 578 GLCSVGKLDDAMTVMANMEHRNCTA 602
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/359 (24%), Positives = 158/359 (44%), Gaps = 70/359 (19%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M+ +GF D YS ++ + G D LF+E+ E+ GV D Y L+ G+ +
Sbjct: 175 MWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSER--GVAPDVTCYNILIDGFLKE 232
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMK-NEHNP--- 116
+ AME ++ + E+SSV + +N ++ L G+ D+ LK+++RMK NE
Sbjct: 233 KDHKTAMELWDRLL-EDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLY 291
Query: 117 --------------------------PKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKM 150
++ ++++ ++N M G+C G+ K+++E++R M
Sbjct: 292 TYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIM 351
Query: 151 GEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGL----------- 199
E++ S + +S+N LI L +NG + EA ++ M KG D+ TYG+
Sbjct: 352 -EHKNSVNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYV 410
Query: 200 ------------------------LMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRL 235
++D + R+++ + ++M G+ N V N L
Sbjct: 411 NKALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNAL 470
Query: 236 VGKLVQVGMLDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDEILEIVGGILDDG 293
+G L++ L EA F M K + SY ++ L GK E V +L++G
Sbjct: 471 IGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENG 529
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 125/279 (44%), Gaps = 12/279 (4%)
Query: 6 FVADPVVYSY--LMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME 63
F +P + SY L+ FV V LF + GV + Y L+K K
Sbjct: 108 FGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFET--AGVAPNLQTYNVLIKMSCKKKEF 165
Query: 64 EEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123
E+A + E K + ++V++ L GK D+AL+LFD M P +
Sbjct: 166 EKARGFLDWMWKE--GFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAP-----D 218
Query: 124 LGSFNVMADGYCGQGRFKDAIEVF-RKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELY 182
+ +N++ DG+ + K A+E++ R + + P+ + N +I L K G + + +++
Sbjct: 219 VTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIW 278
Query: 183 GEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQV 242
M D YTY L+ + VD + F ++ + ++ YN ++G +
Sbjct: 279 ERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRC 338
Query: 243 GMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDE 281
G + E+ + IM K ++ SY ++K L + GK+DE
Sbjct: 339 GKIKESLELWRIMEHKNSVNIVSYNILIKGLLENGKIDE 377
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 118/276 (42%), Gaps = 12/276 (4%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M KG+ AD Y + G +G + + +E++ G + D Y S++ K
Sbjct: 385 MPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHL--DVYAYASIIDCLCKK 442
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRM-KNEHNPPKR 119
EEA E V++++ N+++ L + + EA M KN P
Sbjct: 443 KRLEEASNLVKEM--SKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGKNGCRP--- 497
Query: 120 LAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAE 179
+ S+N++ G C G+F +A ++M E PD +++ L+ LC++ + A
Sbjct: 498 ---TVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKIDLAL 554
Query: 180 ELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKL 239
EL+ + G+ D + +L+ V ++DD T M NL YN L+
Sbjct: 555 ELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGF 614
Query: 240 VQVGMLDEAKSFFDIMVKK-LKMDDASYKFMMKALS 274
+VG + A + M K L+ D SY +MK L
Sbjct: 615 FKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLC 650
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 90/192 (46%), Gaps = 5/192 (2%)
Query: 143 AIEVFRKMGE-YRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLM 201
A++VF++M E + C P S+N L++ + + E L+ GV P+ TY +L+
Sbjct: 97 ALDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLI 156
Query: 202 DACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-LK 260
+ + + M G +P++ Y+ ++ L + G LD+A FD M ++ +
Sbjct: 157 KMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVA 216
Query: 261 MDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVK 320
D Y ++ +E+ +L+D + + + + LSK GR ++ +K
Sbjct: 217 PDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLK 276
Query: 321 L---MEKKEREK 329
+ M++ EREK
Sbjct: 277 IWERMKQNEREK 288
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 5/152 (3%)
Query: 90 VLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRK 149
+L LC + K D AL+L+ + L ++ N++ G C G+ DA+ V
Sbjct: 540 LLCGLCRDRKIDLALELWHQFLQS-----GLETDVMMHNILIHGLCSVGKLDDAMTVMAN 594
Query: 150 MGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNR 209
M C+ + +++N L++ K G A ++G M G+ PD +Y +M
Sbjct: 595 MEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLCMCRG 654
Query: 210 VDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQ 241
V +F + G+ P + +N LV +V
Sbjct: 655 VSYAMEFFDDARNHGIFPTVYTWNILVRAVVN 686
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 108 bits (270), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 118/254 (46%), Gaps = 10/254 (3%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEE 64
G D V Y+ ++ + D +FE L++ V Y +++ GY G +
Sbjct: 268 GLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRR--VPCTYAYNTMIMGYGSAGKFD 325
Query: 65 EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124
EA + S S +A N +L L GK DEALK+F+ MK + P NL
Sbjct: 326 EAYSLLERQRAKGSIP--SVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAP------NL 377
Query: 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGE 184
++N++ D C G+ A E+ M + P+ + N ++D+LCK+ L EA ++ E
Sbjct: 378 STYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEE 437
Query: 185 MSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244
M K PDE T+ L+D +V RVDD + KM+DS R N VY L+ G
Sbjct: 438 MDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGR 497
Query: 245 LDEAKSFFDIMVKK 258
++ + M+ +
Sbjct: 498 KEDGHKIYKDMINQ 511
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 139/280 (49%), Gaps = 18/280 (6%)
Query: 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME 63
+ FV D YS L+ G ++ G ++ + LF +KE+ G V D Y ++ G+ G
Sbjct: 546 RRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQ--GCVLDTRAYNIVIDGFCKCGKV 603
Query: 64 EEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123
+A + E + + + V SV+D L + DEA LF+ K+ KR+ +N
Sbjct: 604 NKAYQLLEEM--KTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKS-----KRIELN 656
Query: 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183
+ ++ + DG+ GR +A + ++ + +P+ ++N+L+D L K + EA +
Sbjct: 657 VVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQ 716
Query: 184 EMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG 243
M + P++ TYG+L++ +V + + ++++M G++P+ Y ++ L + G
Sbjct: 717 SMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAG 776
Query: 244 MLDEAKSFFDIMVKKLKM-----DDASYKFMMKALSDGGK 278
+ EA + FD + K D A Y M++ LS+G +
Sbjct: 777 NIAEAGALFD----RFKANGGVPDSACYNAMIEGLSNGNR 812
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/329 (23%), Positives = 159/329 (48%), Gaps = 25/329 (7%)
Query: 7 VADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEA 66
D + + L+ G + G D ++++E++ + ++ +VY SL+K +F G +E+
Sbjct: 444 TPDEITFCSLIDGLGKVGRVDDAYKVYEKMLD--SDCRTNSIVYTSLIKNFFNHGRKEDG 501
Query: 67 MECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGS 126
+ Y + + +N S + + N+ +D + G+ ++ +F+ +K +R + S
Sbjct: 502 HKIYKDMINQNCSPDLQLL--NTYMDCMFKAGEPEKGRAMFEEIK-----ARRFVPDARS 554
Query: 127 FNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMS 186
++++ G G + E+F M E C DT ++N +ID CK G + +A +L EM
Sbjct: 555 YSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMK 614
Query: 187 DKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLD 246
KG P TYG ++D +++R+D+ F + + N+ +Y+ L+ +VG +D
Sbjct: 615 TKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRID 674
Query: 247 EAKSFF-DIMVKKLKMDDASYKFMMKALSDGGKLDEIL--------------EIVGGILD 291
EA ++M K L + ++ ++ AL +++E L ++ GIL
Sbjct: 675 EAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILI 734
Query: 292 DGGIEFSEELQEFV-KGELSKEGREEEVV 319
+G + + + FV E+ K+G + +
Sbjct: 735 NGLCKVRKFNKAFVFWQEMQKQGMKPSTI 763
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/317 (23%), Positives = 149/317 (47%), Gaps = 14/317 (4%)
Query: 10 PVVYSY--LMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAM 67
P Y+Y +++G+ G D + L E + K G + + Y ++ G +EA+
Sbjct: 306 PCTYAYNTMIMGYGSAGKFDEAYSLLERQRAK--GSIPSVIAYNCILTCLRKMGKVDEAL 363
Query: 68 ECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSF 127
+ + E + ++++ +S N ++D LC GK D A +L D M+ P N+ +
Sbjct: 364 KVFEE-MKKDAAPNLSTY--NILIDMLCRAGKLDTAFELRDSMQKAGLFP-----NVRTV 415
Query: 128 NVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSD 187
N+M D C + +A +F +M C+PD ++F +LID L K G + +A ++Y +M D
Sbjct: 416 NIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLD 475
Query: 188 KGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDE 247
+ Y L+ F R +DG ++ M++ P+L + N + + + G ++
Sbjct: 476 SDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEK 535
Query: 248 AKSFF-DIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVK 306
++ F +I ++ D SY ++ L G +E E+ + + G + + +
Sbjct: 536 GRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVID 595
Query: 307 GELSKEGREEEVVKLME 323
G K G+ + +L+E
Sbjct: 596 G-FCKCGKVNKAYQLLE 611
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 137/286 (47%), Gaps = 13/286 (4%)
Query: 9 DPVV--YSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEA 66
+P V ++ L+ GF ++G D L +E+K + +D V+Y + + G + A
Sbjct: 200 EPTVHLFTTLIRGFAKEGRVDSALSLLDEMKS--SSLDADIVLYNVCIDSFGKVGKVDMA 257
Query: 67 MECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGS 126
+ ++E E + +K V S++ LC + DEA+++F+ ++ P A
Sbjct: 258 WKFFHEI--EANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYA----- 310
Query: 127 FNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMS 186
+N M GY G+F +A + + P +++N ++ L K G + EA +++ EM
Sbjct: 311 YNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMK 370
Query: 187 DKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLD 246
K P+ TY +L+D ++D M +GL PN+ N +V +L + LD
Sbjct: 371 -KDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLD 429
Query: 247 EAKSFFDIM-VKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILD 291
EA + F+ M K D+ ++ ++ L G++D+ ++ +LD
Sbjct: 430 EACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLD 475
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 137/292 (46%), Gaps = 11/292 (3%)
Query: 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME 63
+G V D Y+ ++ GF + G + ++L EE+K K G V YGS++ G
Sbjct: 581 QGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTK--GFEPTVVTYGSVIDGLAKIDRL 638
Query: 64 EEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123
+EA + EA ++ ++++ V +S++D G+ DEA + + + K L N
Sbjct: 639 DEAYMLFEEA--KSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQ-----KGLTPN 691
Query: 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183
L ++N + D +A+ F+ M E +C+P+ +++ LI+ LCK +A +
Sbjct: 692 LYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQ 751
Query: 184 EMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG 243
EM +G+ P +Y ++ + + + F + +G P+ A YN ++ L
Sbjct: 752 EMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGN 811
Query: 244 MLDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGG 294
+A S F+ ++ L + + + ++ L L++ IVG +L + G
Sbjct: 812 RAMDAFSLFEETRRRGLPIHNKTCVVLLDTLHKNDCLEQA-AIVGAVLRETG 862
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 101/225 (44%), Gaps = 9/225 (4%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M KGF V Y ++ G + D + LFEE K K + + V+Y SL+ G+
Sbjct: 613 MKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSK--RIELNVVIYSSLIDGFGKV 670
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
G +EA E + + + + NS+LDAL + +EAL F MK P ++
Sbjct: 671 GRIDEAYLILEELMQKGLTPNLYTW--NSLLDALVKAEEINEALVCFQSMKELKCTPNQV 728
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
++ ++ +G C +F A +++M + P T+S+ +I L K G +AEA
Sbjct: 729 -----TYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGA 783
Query: 181 LYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGL 225
L+ G PD Y +++ NR D + F + GL
Sbjct: 784 LFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGL 828
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 6/186 (3%)
Query: 101 DEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTL 160
D L LF +M+ P V+L F + G+ +GR A+ + +M D +
Sbjct: 185 DMMLTLFQQMQELGYEP---TVHL--FTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIV 239
Query: 161 SFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKM 220
+N ID K G + A + + E+ G+ PDE TY ++ + NR+D+ F +
Sbjct: 240 LYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHL 299
Query: 221 VDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDA-SYKFMMKALSDGGKL 279
+ P YN ++ G DEA S + K + +Y ++ L GK+
Sbjct: 300 EKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKV 359
Query: 280 DEILEI 285
DE L++
Sbjct: 360 DEALKV 365
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 86/188 (45%), Gaps = 2/188 (1%)
Query: 144 IEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDA 203
+ +F++M E P F LI K G + A L EM ++ D Y + +D+
Sbjct: 188 LTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDS 247
Query: 204 CFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMD- 262
+V +VD +F ++ +GL+P+ Y ++G L + LDEA F+ + K ++
Sbjct: 248 FGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPC 307
Query: 263 DASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLM 322
+Y M+ GK DE ++ G I S + L K G+ +E +K+
Sbjct: 308 TYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIP-SVIAYNCILTCLRKMGKVDEALKVF 366
Query: 323 EKKEREKA 330
E+ +++ A
Sbjct: 367 EEMKKDAA 374
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 139 RFKD---AIEVFR---KMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNP 192
R KD AIE FR + E P+ S+N+L+ + + +++ GEMS G P
Sbjct: 74 RLKDVNRAIEYFRWYERRTELPHCPE--SYNSLLLVMARCRNFDALDQILGEMSVAGFGP 131
Query: 193 DEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFF 252
T ++ C + N++ +G + M RP + Y L+G V D + F
Sbjct: 132 SVNTCIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLF 191
Query: 253 DIMVKKLKMDDASYKF--MMKALSDGGKLDEILEIV 286
M ++L + + F +++ + G++D L ++
Sbjct: 192 QQM-QELGYEPTVHLFTTLIRGFAKEGRVDSALSLL 226
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 108 bits (270), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 80/353 (22%), Positives = 159/353 (45%), Gaps = 36/353 (10%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M + D + Y+ L+ RD +L +E++++ G D V Y L+ G +
Sbjct: 230 MLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDR--GCTPDVVTYNVLVNGICKE 287
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
G +EA++ N+ +S + + + +N +L ++C+ G++ +A KL M + P +
Sbjct: 288 GRLDEAIKFLNDM--PSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVV 345
Query: 121 AVN-----------LG-------------------SFNVMADGYCGQGRFKDAIEVFRKM 150
N LG S+N + G+C + + AIE +M
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM 405
Query: 151 GEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRV 210
C PD +++N ++ LCK+G + +A E+ ++S KG +P TY ++D + +
Sbjct: 406 VSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKT 465
Query: 211 DDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-LKMDDASYKFM 269
+M L+P+ Y+ LVG L + G +DEA FF + ++ + ++ +
Sbjct: 466 GKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSI 525
Query: 270 MKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLM 322
M L + D ++ + +++ G ++G L+ EG +E ++L+
Sbjct: 526 MLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEG-LAYEGMAKEALELL 577
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/306 (22%), Positives = 139/306 (45%), Gaps = 14/306 (4%)
Query: 20 FVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSS 79
VR G+ + F+ E + G V D + +L++G+ G +A + + E S
Sbjct: 112 MVRTGELEEGFKFLENMVYH--GNVPDIIPCTTLIRGFCRLGKTRKAAKILE--ILEGSG 167
Query: 80 VKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGR 139
+ N ++ C G+ + AL + DRM ++ ++ ++N + C G+
Sbjct: 168 AVPDVITYNVMISGYCKAGEINNALSVLDRMS--------VSPDVVTYNTILRSLCDSGK 219
Query: 140 FKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGL 199
K A+EV +M + C PD +++ LI+ C++ + A +L EM D+G PD TY +
Sbjct: 220 LKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNV 279
Query: 200 LMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG-MLDEAKSFFDIMVKK 258
L++ + R+D+ + M SG +PN+ +N ++ + G +D K D++ K
Sbjct: 280 LVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKG 339
Query: 259 LKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEV 318
++ ++ L G L ++I+ + G S + G KE + +
Sbjct: 340 FSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHG-FCKEKKMDRA 398
Query: 319 VKLMEK 324
++ +E+
Sbjct: 399 IEYLER 404
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 124/291 (42%), Gaps = 39/291 (13%)
Query: 77 NSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN--------LG--- 125
NSS + V +N+ L + G+ +E K + M N P + LG
Sbjct: 95 NSSFALEDVESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTR 154
Query: 126 -------------------SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLI 166
++NVM GYC G +A+ V +M SPD +++N ++
Sbjct: 155 KAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTIL 211
Query: 167 DQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLR 226
LC +G L +A E+ M + PD TY +L++A + V +M D G
Sbjct: 212 RSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCT 271
Query: 227 PNLAVYNRLVGKLVQVGMLDEAKSFF-DIMVKKLKMDDASYKFMMKALSDGGKLDEILEI 285
P++ YN LV + + G LDEA F D+ + + ++ +++++ G+ + ++
Sbjct: 272 PDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKL 331
Query: 286 VGGILDDGGIEFSEELQEF--VKGELSKEGREEEVVKLMEKKEREKAEAKA 334
+ +L G FS + F + L ++G + ++EK + + +
Sbjct: 332 LADMLRKG---FSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNS 379
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 121/265 (45%), Gaps = 9/265 (3%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M KGF V ++ L+ R G + E++ + G + + Y L+ G+ +
Sbjct: 335 MLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQH--GCQPNSLSYNPLLHGFCKE 392
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
+ A+E V + V N++L ALC +GK ++A+++ +++ ++ P
Sbjct: 393 KKMDRAIEYLERMVSRGCYPDI--VTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPV-- 448
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
L ++N + DG G+ AI++ +M PDT+++++L+ L + G + EA +
Sbjct: 449 ---LITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIK 505
Query: 181 LYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240
+ E G+ P+ T+ +M + + D + M++ G +PN Y L+ L
Sbjct: 506 FFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLA 565
Query: 241 QVGMLDEAKSFFDIMVKKLKMDDAS 265
GM EA + + K M +S
Sbjct: 566 YEGMAKEALELLNELCNKGLMKKSS 590
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 146/310 (47%), Gaps = 21/310 (6%)
Query: 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME 63
KG + V Y+ L+ G RL ++ +K + + + Y +L+ + G
Sbjct: 219 KGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKK--KITPNVITYSALLDAFVKNGKV 276
Query: 64 EEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123
EA E + E V S+ V +S+++ LC + + DEA ++FD M + K +
Sbjct: 277 LEAKELFEEMV--RMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVS-----KGCLAD 329
Query: 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183
+ S+N + +G+C R +D +++FR+M + +T+++N LI + G + +A+E +
Sbjct: 330 VVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFS 389
Query: 184 EMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG 243
+M G++PD +TY +L+ + ++ F M + ++ Y ++ + + G
Sbjct: 390 QMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTG 449
Query: 244 MLDEAKSFF-DIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGI-----------LD 291
++EA S F + +K LK D +Y MM L G L E+ + + L
Sbjct: 450 KVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLS 509
Query: 292 DGGIEFSEEL 301
DG I S EL
Sbjct: 510 DGDITLSAEL 519
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 136/286 (47%), Gaps = 10/286 (3%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M G+ D V L+ GF R L +++ E G D V Y +++
Sbjct: 146 MLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI--GYKPDIVAYNAIIDSLCKT 203
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
+A + + E E ++ + V ++++ LCN+ ++ +A +L M + P
Sbjct: 204 KRVNDAFDFFKEI--ERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITP--- 258
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
N+ +++ + D + G+ +A E+F +M PD +++++LI+ LC + + EA +
Sbjct: 259 --NVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQ 316
Query: 181 LYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240
++ M KG D +Y L++ + RV+DG FR+M GL N YN L+
Sbjct: 317 MFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFF 376
Query: 241 QVGMLDEAKSFFDIM-VKKLKMDDASYKFMMKALSDGGKLDEILEI 285
Q G +D+A+ FF M + D +Y ++ L D G+L++ L I
Sbjct: 377 QAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVI 422
Score = 105 bits (262), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 138/278 (49%), Gaps = 10/278 (3%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEE 64
G+ D V Y+ ++ + + F F+E++ K G+ + V Y +L+ G
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERK--GIRPNVVTYTALVNGLCNSSRWS 242
Query: 65 EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124
+A ++ + + + + + +++LDA NGK EA +LF+ M P ++
Sbjct: 243 DAARLLSDMIKKK--ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDP-----DI 295
Query: 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGE 184
+++ + +G C R +A ++F M C D +S+N LI+ CK + + +L+ E
Sbjct: 296 VTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFRE 355
Query: 185 MSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244
MS +G+ + TY L+ F+ VD +F +M G+ P++ YN L+G L G
Sbjct: 356 MSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGE 415
Query: 245 LDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDE 281
L++A F+ M K+ + +D +Y +++ + GK++E
Sbjct: 416 LEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEE 453
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 101/206 (49%), Gaps = 10/206 (4%)
Query: 83 SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAV--NLGSFNVMADGYCGQGRF 140
S V N +L A+ K+D + L +M+ L + +L +FN++ + +C +
Sbjct: 84 SIVDFNRLLSAIVKLKKYDVVISLGKKME-------VLGIRNDLYTFNIVINCFCCCFQV 136
Query: 141 KDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLL 200
A+ + KM + PD ++ +L++ C+ +++A L +M + G PD Y +
Sbjct: 137 SLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAI 196
Query: 201 MDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGML-DEAKSFFDIMVKKL 259
+D+ + RV+D +F+++ G+RPN+ Y LV L D A+ D++ KK+
Sbjct: 197 IDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKI 256
Query: 260 KMDDASYKFMMKALSDGGKLDEILEI 285
+ +Y ++ A GK+ E E+
Sbjct: 257 TPNVITYSALLDAFVKNGKVLEAKEL 282
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 95/225 (42%), Gaps = 42/225 (18%)
Query: 139 RFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYG 198
+ DAI++F M + R P + FN L+ + K L +M G+ D YT+
Sbjct: 65 KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124
Query: 199 LLMD---ACFEV--------------------------------NRVDDGATYFRKMVDS 223
++++ CF+V NRV D + KMV+
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184
Query: 224 GLRPNLAVYNRLVGKLVQVGMLDEAKSFF-DIMVKKLKMDDASYKFMMKALSDGGKLDEI 282
G +P++ YN ++ L + +++A FF +I K ++ + +Y ++ L + + +
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDA 244
Query: 283 LEIVGGI----LDDGGIEFSEELQEFVKGELSKEGRE--EEVVKL 321
++ + + I +S L FVK E +E EE+V++
Sbjct: 245 ARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRM 289
>sp|O81908|PPR2_ARATH Pentatricopeptide repeat-containing protein At1g02060,
chloroplastic OS=Arabidopsis thaliana GN=At1g02060 PE=2
SV=2
Length = 710
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 132/287 (45%), Gaps = 19/287 (6%)
Query: 15 YLMLGFVRDGDSDGVFR--LFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNE 72
+LML F+ + V R LF + G V + SL++ Y G+ +E+++ +
Sbjct: 104 FLMLEFLGRARNLNVARNFLFSIERRSNGCVKLQDRYFNSLIRSYGNAGLFQESVKLFQT 163
Query: 73 AVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMAD 132
+ + S + NS+L L G+ A LFD M+ + + + +FN + +
Sbjct: 164 M--KQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRTYG----VTPDSYTFNTLIN 217
Query: 133 GYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKG--V 190
G+C +A +F+ M Y C+PD +++N +ID LC+ G + A + M K V
Sbjct: 218 GFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDV 277
Query: 191 NPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKS 250
+P+ +Y L+ +D+ F M+ GL+PN YN L+ L + DE K
Sbjct: 278 HPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIK- 336
Query: 251 FFDIMV------KKLKMDDASYKFMMKALSDGGKLDEILEIVGGILD 291
DI++ D ++ ++KA D G LD +++ +L+
Sbjct: 337 --DILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMKVFQEMLN 381
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/317 (22%), Positives = 133/317 (41%), Gaps = 35/317 (11%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEE 64
G D ++ L+ GF ++ D FR+F+++ +L D V Y +++ G G +
Sbjct: 204 GVTPDSYTFNTLINGFCKNSMVDEAFRIFKDM--ELYHCNPDVVTYNTIIDGLCRAGKVK 261
Query: 65 EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124
A + + + + V + V+ +++ C + DEA+ +F M + P N
Sbjct: 262 IAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKP-----NA 316
Query: 125 GSFNVMADGYCGQGRF----------KDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGM 174
++N + G R+ DA F +PD +FN LI C G
Sbjct: 317 VTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTF--------APDACTFNILIKAHCDAGH 368
Query: 175 LAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGL-------RP 227
L A +++ EM + ++PD +Y +L+ N D T F ++ + + +P
Sbjct: 369 LDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVLLGKDECKP 428
Query: 228 NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVG 287
A YN + L G +A+ F ++K+ D SYK ++ GK E++
Sbjct: 429 LAAAYNPMFEYLCANGKTKQAEKVFRQLMKRGVQDPPSYKTLITGHCREGKFKPAYELLV 488
Query: 288 GILDDGGIEFSEELQEF 304
+L EF +L+ +
Sbjct: 489 LMLRR---EFVPDLETY 502
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 69/310 (22%), Positives = 133/310 (42%), Gaps = 18/310 (5%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M +G + V Y+ L+ G D + + + D + L+K +
Sbjct: 307 MLSRGLKPNAVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAHCDA 366
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRM--------KN 112
G + AM+ + E + N + + + + ++ LC +FD A LF+ + K+
Sbjct: 367 GHLDAAMKVFQEML--NMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVLLGKD 424
Query: 113 EHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKN 172
E P LA ++N M + C G+ K A +VFR++ + R D S+ LI C+
Sbjct: 425 ECKP---LA---AAYNPMFEYLCANGKTKQAEKVFRQLMK-RGVQDPPSYKTLITGHCRE 477
Query: 173 GMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVY 232
G A EL M + PD TY LL+D ++ ++M+ S P +
Sbjct: 478 GKFKPAYELLVLMLRREFVPDLETYELLIDGLLKIGEALLAHDTLQRMLRSSYLPVATTF 537
Query: 233 NRLVGKLVQVGMLDEAKSFFDIMV-KKLKMDDASYKFMMKALSDGGKLDEILEIVGGILD 291
+ ++ +L + +E+ +M+ K+++ + +++ L + ++ IV + D
Sbjct: 538 HSVLAELAKRKFANESFCLVTLMLEKRIRQNIDLSTQVVRLLFSSAQKEKAFLIVRLLYD 597
Query: 292 DGGIEFSEEL 301
+G + EEL
Sbjct: 598 NGYLVKMEEL 607
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 135/276 (48%), Gaps = 10/276 (3%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEE 64
GF D V Y+ L+ + + ++ E+ L G V Y SL+ Y GM +
Sbjct: 309 GFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMV--LNGFSPSIVTYNSLISAYARDGMLD 366
Query: 65 EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124
EAME N+ + + K ++L GK + A+ +F+ M+N P N+
Sbjct: 367 EAMELKNQMAEKGT--KPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKP-----NI 419
Query: 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGE 184
+FN Y +G+F + +++F ++ SPD +++N L+ +NGM +E ++ E
Sbjct: 420 CTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKE 479
Query: 185 MSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244
M G P+ T+ L+ A + T +R+M+D+G+ P+L+ YN ++ L + GM
Sbjct: 480 MKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGM 539
Query: 245 LDEAKSFFDIMVK-KLKMDDASYKFMMKALSDGGKL 279
++++ M + K ++ +Y ++ A ++G ++
Sbjct: 540 WEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEI 575
Score = 91.7 bits (226), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 131/279 (46%), Gaps = 12/279 (4%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEE 64
G D Y+ L+ R ++FEE+K G D V Y +L+ Y +
Sbjct: 274 GIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKA--AGFSYDKVTYNALLDVYGKSHRPK 331
Query: 65 EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124
EAM+ NE V S S V NS++ A +G DEA++L ++M + P ++
Sbjct: 332 EAMKVLNEMVLNGFSP--SIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKP-----DV 384
Query: 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGE 184
++ + G+ G+ + A+ +F +M C P+ +FN I G E +++ E
Sbjct: 385 FTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDE 444
Query: 185 MSDKGVNPDEYTYGLLMDACFEVNRVDDGAT-YFRKMVDSGLRPNLAVYNRLVGKLVQVG 243
++ G++PD T+ L+ A F N +D + F++M +G P +N L+ + G
Sbjct: 445 INVCGLSPDIVTWNTLL-AVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCG 503
Query: 244 MLDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGGKLDE 281
++A + + M+ + D ++Y ++ AL+ GG ++
Sbjct: 504 SFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQ 542
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 124/280 (44%), Gaps = 11/280 (3%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEE 64
GF D Y+ L+ F G +F++++E G + Y ++ + G
Sbjct: 203 GFSLDVYSYTSLISAFANSGRYREAVNVFKKMEED--GCKPTLITYNVILNVFGKMGTPW 260
Query: 65 EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFD-EALKLFDRMKNEHNPPKRLAVN 123
+ E + ++ + A N+++ C G EA ++F+ MK + +
Sbjct: 261 NKITSLVEKM-KSDGIAPDAYTYNTLITC-CKRGSLHQEAAQVFEEMKAAG-----FSYD 313
Query: 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183
++N + D Y R K+A++V +M SP +++N+LI ++GML EA EL
Sbjct: 314 KVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKN 373
Query: 184 EMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG 243
+M++KG PD +TY L+ +V+ + F +M ++G +PN+ +N + G
Sbjct: 374 QMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRG 433
Query: 244 MLDEAKSFFD-IMVKKLKMDDASYKFMMKALSDGGKLDEI 282
E FD I V L D ++ ++ G E+
Sbjct: 434 KFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEV 473
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 63/131 (48%)
Query: 123 NLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELY 182
++ ++N + + F + E+ R++ PD +S+N +I C+N + +A ++
Sbjct: 663 SMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIF 722
Query: 183 GEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQV 242
EM + G+ PD TY + + + ++ R M+ G RPN YN +V ++
Sbjct: 723 SEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKL 782
Query: 243 GMLDEAKSFFD 253
DEAK F +
Sbjct: 783 NRKDEAKLFVE 793
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 108/262 (41%), Gaps = 17/262 (6%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYF-- 58
M G D Y+ ++ R G + ++ E+++ G + + Y SL+ Y
Sbjct: 515 MLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMED--GRCKPNELTYCSLLHAYANG 572
Query: 59 --MKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNP 116
+ M A E Y+ + + + + V S D L EA + F +K
Sbjct: 573 KEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLL------PEAERAFSELKERGFS 626
Query: 117 PKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLA 176
P ++ + N M Y + A V M E +P ++N+L+ ++
Sbjct: 627 P-----DITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFG 681
Query: 177 EAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLV 236
++EE+ E+ KG+ PD +Y ++ A R+ D + F +M +SG+ P++ YN +
Sbjct: 682 KSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFI 741
Query: 237 GKLVQVGMLDEAKSFFDIMVKK 258
G M +EA M+K
Sbjct: 742 GSYAADSMFEEAIGVVRYMIKH 763
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 47/101 (46%)
Query: 143 AIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMD 202
A + F K +Y+ D +I L K G ++ A ++ + + G + D Y+Y L+
Sbjct: 157 AFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLIS 216
Query: 203 ACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG 243
A R + F+KM + G +P L YN ++ ++G
Sbjct: 217 AFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMG 257
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 6/118 (5%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
+ KG D + Y+ ++ + R+ R+F E++ G+V D + Y + + Y
Sbjct: 690 ILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRN--SGIVPDVITYNTFIGSYAAD 747
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKN--EHNP 116
M EEA+ + + NS++D C + DEA + ++N H P
Sbjct: 748 SMFEEAIGVVRYMIKHGCRPNQNTY--NSIVDGYCKLNRKDEAKLFVEDLRNLDPHAP 803
>sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580
OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1
Length = 523
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/321 (23%), Positives = 149/321 (46%), Gaps = 11/321 (3%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEE 64
GFV + V+Y+ ++ G ++ D + +F +++K G+ +D V Y +L+ G G
Sbjct: 179 GFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKK--GIRADAVTYNTLISGLSNSGRWT 236
Query: 65 EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124
+A + V + + + +++D G EA L+ M P N+
Sbjct: 237 DAARLLRDMVKR--KIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVP-----NV 289
Query: 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGE 184
++N + +G+C G DA +F M C PD +++N LI CK+ + + +L+ E
Sbjct: 290 FTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCE 349
Query: 185 MSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244
M+ +G+ D +TY L+ + +++ F +MVD G+ P++ YN L+ L G
Sbjct: 350 MTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGK 409
Query: 245 LDEAKSFF-DIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQE 303
+++A D+ ++ +D +Y +++ L KL E + + G +
Sbjct: 410 IEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYIT 469
Query: 304 FVKGELSKEGREEEVVKLMEK 324
+ G L ++G + E KL +
Sbjct: 470 MISG-LCRKGLQREADKLCRR 489
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 98/197 (49%), Gaps = 9/197 (4%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M KG D V Y+ L+ GF + + +LF E+ + G+V D Y +L+ GY
Sbjct: 315 MVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQ--GLVGDAFTYNTLIHGYCQA 372
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
G A + +N V + V V N +LD LCNNGK ++AL + + ++ +
Sbjct: 373 GKLNVAQKVFNRMV--DCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKS-----EM 425
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
V++ ++N++ G C + K+A +FR + PD +++ +I LC+ G+ EA++
Sbjct: 426 DVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADK 485
Query: 181 LYGEMSDKGVNPDEYTY 197
L M + G P E Y
Sbjct: 486 LCRRMKEDGFMPSERIY 502
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 128/275 (46%), Gaps = 10/275 (3%)
Query: 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME 63
KG AD V Y+ L+ G G RL ++ ++ + + + + +L+ + +G
Sbjct: 213 KGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKR--KIDPNVIFFTALIDTFVKEGNL 270
Query: 64 EEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123
EA Y E + SV + NS+++ C +G +A +FD M ++ P +
Sbjct: 271 LEARNLYKEMI--RRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFP-----D 323
Query: 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183
+ ++N + G+C R +D +++F +M D ++N LI C+ G L A++++
Sbjct: 324 VVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFN 383
Query: 184 EMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG 243
M D GV+PD TY +L+D +++ + S + ++ YN ++ L +
Sbjct: 384 RMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTD 443
Query: 244 MLDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGG 277
L EA F + +K +K D +Y M+ L G
Sbjct: 444 KLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKG 478
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 3/137 (2%)
Query: 122 VNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEEL 181
V LGS + +G+C RF++A+ + M + P+ + +N +I+ LCKN L A E+
Sbjct: 150 VTLGS---LLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEV 206
Query: 182 YGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQ 241
+ M KG+ D TY L+ R D A R MV + PN+ + L+ V+
Sbjct: 207 FYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVK 266
Query: 242 VGMLDEAKSFFDIMVKK 258
G L EA++ + M+++
Sbjct: 267 EGNLLEARNLYKEMIRR 283
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 92/213 (43%), Gaps = 10/213 (4%)
Query: 99 KFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD 158
KFD+A LF M P ++ F + +F I ++ KM S D
Sbjct: 59 KFDDAFSLFCEMLQSRPIP-----SIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHD 113
Query: 159 TLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFR 218
SF LI C+ L+ A L G+M G P T G L++ + NR + +
Sbjct: 114 LYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVD 173
Query: 219 KMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-LKMDDASYKFMMKALSDGG 277
M G PN+ +YN ++ L + L+ A F M KK ++ D +Y ++ LS+ G
Sbjct: 174 SMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSG 233
Query: 278 KLDE----ILEIVGGILDDGGIEFSEELQEFVK 306
+ + + ++V +D I F+ + FVK
Sbjct: 234 RWTDAARLLRDMVKRKIDPNVIFFTALIDTFVK 266
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 149/312 (47%), Gaps = 12/312 (3%)
Query: 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLG-GVVSDGVVYGSLMKGYFMKGM 62
KGFV D + L+ G G D FR+ KE LG G V D V Y +L+ G K
Sbjct: 512 KGFVVDTRTSNALLHGLCEAGKLDEAFRI---QKEILGRGCVMDRVSYNTLISGCCGKKK 568
Query: 63 EEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAV 122
+EA +E V +K + ++ L N K +EA++ +D K P
Sbjct: 569 LDEAFMFLDEMV--KRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLP----- 621
Query: 123 NLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELY 182
++ +++VM DG C R ++ E F +M P+T+ +N+LI C++G L+ A EL
Sbjct: 622 DVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELR 681
Query: 183 GEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQV 242
+M KG++P+ TY L+ ++RV++ F +M GL PN+ Y L+ ++
Sbjct: 682 EDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKL 741
Query: 243 GMLDEAKSFF-DIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEEL 301
G + + + ++ K + + +Y M+ + G + E ++ + + G + S
Sbjct: 742 GQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITY 801
Query: 302 QEFVKGELSKEG 313
+EF+ G L + G
Sbjct: 802 KEFIYGYLKQGG 813
Score = 102 bits (254), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 85/340 (25%), Positives = 154/340 (45%), Gaps = 11/340 (3%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M KG Y+ L+ G+ ++G +D RL +E+ +G V+ G + S++
Sbjct: 404 MVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLS-IGFNVNQGS-FTSVICLLCSH 461
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
M + A+ E + N S + +++ LC +GK +AL+L+ + N K
Sbjct: 462 LMFDSALRFVGEMLLRNMSPGGGLLT--TLISGLCKHGKHSKALELWFQFLN-----KGF 514
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
V+ + N + G C G+ +A + +++ C D +S+N LI C L EA
Sbjct: 515 VVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFM 574
Query: 181 LYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240
EM +G+ PD YTY +L+ F +N+V++ ++ +G+ P++ Y+ ++
Sbjct: 575 FLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCC 634
Query: 241 QVGMLDEAKSFFD-IMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSE 299
+ +E + FFD +M K ++ + Y +++A G+L LE+ + G S
Sbjct: 635 KAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSA 694
Query: 300 ELQEFVKGELSKEGREEEVVKLMEKKEREKAEAKAREAEA 339
+KG +S R EE L E+ E E A
Sbjct: 695 TYTSLIKG-MSIISRVEEAKLLFEEMRMEGLEPNVFHYTA 733
Score = 88.6 bits (218), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 7/212 (3%)
Query: 83 SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKD 142
S N +L +L +F + + FD + +P L F + +C G+ ++
Sbjct: 238 SKTTCNILLTSLVRANEFQKCCEAFDVVCKGVSPDVYL------FTTAINAFCKGGKVEE 291
Query: 143 AIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMD 202
A+++F KM E +P+ ++FN +ID L G EA +M ++G+ P TY +L+
Sbjct: 292 AVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVK 351
Query: 203 ACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-LKM 261
R+ D ++M G PN+ VYN L+ ++ G L++A D+MV K L +
Sbjct: 352 GLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSL 411
Query: 262 DDASYKFMMKALSDGGKLDEILEIVGGILDDG 293
++Y ++K G+ D ++ +L G
Sbjct: 412 TSSTYNTLIKGYCKNGQADNAERLLKEMLSIG 443
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 112/250 (44%), Gaps = 10/250 (4%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M +G D YS L+ G + + +++ K G++ D Y ++ G
Sbjct: 579 MVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKR--NGMLPDVYTYSVMIDGCCKA 636
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
EE E ++E + +N V+ + V N ++ A C +G+ AL+L + MK++ P
Sbjct: 637 ERTEEGQEFFDEMMSKN--VQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISP--- 691
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
N ++ + G R ++A +F +M P+ + LID K G + + E
Sbjct: 692 --NSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVEC 749
Query: 181 LYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLV-GKL 239
L EM K V+P++ TY +++ V + + +M + G+ P+ Y + G L
Sbjct: 750 LLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYL 809
Query: 240 VQVGMLDEAK 249
Q G+L+ K
Sbjct: 810 KQGGVLEAFK 819
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/319 (21%), Positives = 138/319 (43%), Gaps = 12/319 (3%)
Query: 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME 63
KG + L+ VR + F+ + + GV D ++ + + + G
Sbjct: 233 KGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCK---GVSPDVYLFTTAINAFCKGGKV 289
Query: 64 EEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123
EEA++ +++ E + V + V N+V+D L G++DEA ++M P
Sbjct: 290 EEAVKLFSKM--EEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEP-----T 342
Query: 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183
L +++++ G R DA V ++M + P+ + +NNLID + G L +A E+
Sbjct: 343 LITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKD 402
Query: 184 EMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG 243
M KG++ TY L+ + + D+ ++M+ G N + ++ L
Sbjct: 403 LMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHL 462
Query: 244 MLDEAKSFF-DIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQ 302
M D A F +++++ + ++ L GK + LE+ L+ G + +
Sbjct: 463 MFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSN 522
Query: 303 EFVKGELSKEGREEEVVKL 321
+ G L + G+ +E ++
Sbjct: 523 ALLHG-LCEAGKLDEAFRI 540
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 123/259 (47%), Gaps = 10/259 (3%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M KG+ D ++ L+ G+ + + + + + GV D Y SL+ G
Sbjct: 452 MISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDN--GVDPDVYTYNSLLNGLCKT 509
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
E+ ME Y V + + + N +L++LC K DEAL L + MKN+ P +
Sbjct: 510 SKFEDVMETYKTMVEKGCAPNLFTF--NILLESLCRYRKLDEALGLLEEMKNKSVNPDAV 567
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGE-YRCSPDTLSFNNLIDQLCKNGMLAEAE 179
+F + DG+C G A +FRKM E Y+ S T ++N +I + + AE
Sbjct: 568 -----TFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAE 622
Query: 180 ELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKL 239
+L+ EM D+ + PD YTY L++D + V+ G + +M+++G P+L R++ L
Sbjct: 623 KLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCL 682
Query: 240 VQVGMLDEAKSFFDIMVKK 258
+ EA MV+K
Sbjct: 683 CVEDRVYEAAGIIHRMVQK 701
Score = 102 bits (253), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 140/311 (45%), Gaps = 42/311 (13%)
Query: 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEE 64
GFV D Y L+ G +G+++ LF E K G+ + ++Y +L+KG +GM
Sbjct: 351 GFVPDQFTYRSLIDGLCHEGETNRALALFNEALGK--GIKPNVILYNTLIKGLSNQGMIL 408
Query: 65 EAMECYNEA-------------VGENSSVKMSAVAN--------------------NSVL 91
EA + NE + N KM V++ N ++
Sbjct: 409 EAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILI 468
Query: 92 DALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMG 151
K + AL++ D M + P ++ ++N + +G C +F+D +E ++ M
Sbjct: 469 HGYSTQLKMENALEILDVMLDNGVDP-----DVYTYNSLLNGLCKTSKFEDVMETYKTMV 523
Query: 152 EYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVD 211
E C+P+ +FN L++ LC+ L EA L EM +K VNPD T+G L+D + +D
Sbjct: 524 EKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLD 583
Query: 212 DGATYFRKMVDS-GLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-LKMDDASYKFM 269
T FRKM ++ + + YN ++ + + A+ F MV + L D +Y+ M
Sbjct: 584 GAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLM 643
Query: 270 MKALSDGGKLD 280
+ G ++
Sbjct: 644 VDGFCKTGNVN 654
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 128/281 (45%), Gaps = 10/281 (3%)
Query: 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60
M +G D Y+ L+ G+ + G R+ + G V D Y SL+ G +
Sbjct: 312 MVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGD--AVFNGFVPDQFTYRSLIDGLCHE 369
Query: 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120
G A+ +NEA+G+ +K + + N+++ L N G EA +L + M K L
Sbjct: 370 GETNRALALFNEALGK--GIKPNVILYNTLIKGLSNQGMILEAAQLANEMSE-----KGL 422
Query: 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEE 180
+ +FN++ +G C G DA + + M PD +FN LI + A E
Sbjct: 423 IPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALE 482
Query: 181 LYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240
+ M D GV+PD YTY L++ + ++ +D ++ MV+ G PNL +N L+ L
Sbjct: 483 ILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLC 542
Query: 241 QVGMLDEAKSFFDIMV-KKLKMDDASYKFMMKALSDGGKLD 280
+ LDEA + M K + D ++ ++ G LD
Sbjct: 543 RYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLD 583
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/361 (22%), Positives = 139/361 (38%), Gaps = 80/361 (22%)
Query: 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME 63
+G D ++ M F + RL + + G + V Y +++ G++ + +
Sbjct: 140 RGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQ--GCEMNVVAYCTVVGGFYEENFK 197
Query: 64 EEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123
E E + + + S+ +S N +L LC G E KL D++ P N
Sbjct: 198 AEGYELFGKMLASGVSLCLSTF--NKLLRVLCKKGDVKECEKLLDKVIKRGVLP-----N 250
Query: 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183
L ++N+ G C +G A+ + + E PD +++NNLI LCKN EAE G
Sbjct: 251 LFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLG 310
Query: 184 EMSDKGVNPDEYTY-----------------------------------GLLMDACFEVN 208
+M ++G+ PD YTY L+D
Sbjct: 311 KMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEG 370
Query: 209 RVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSF---------------FD 253
+ F + + G++PN+ +YN L+ L GM+ EA F+
Sbjct: 371 ETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFN 430
Query: 254 IMVKKL-KM--------------------DDASYKFMMKALSDGGKLDEILEIVGGILDD 292
I+V L KM D ++ ++ S K++ LEI+ +LD+
Sbjct: 431 ILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDN 490
Query: 293 G 293
G
Sbjct: 491 G 491
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 121/260 (46%), Gaps = 9/260 (3%)
Query: 35 ELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDAL 94
+++E +G + +GV G+ MK Y KG +EA+ + + + + + N+++ L
Sbjct: 65 DMRENVGNHMLEGVYVGA-MKNYGRKGKVQEAVNVFERM--DFYDCEPTVFSYNAIMSVL 121
Query: 95 CNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYR 154
++G FD+A K++ RM++ P ++ SF + +C R A+ + M
Sbjct: 122 VDSGYFDQAHKVYMRMRDRGITP-----DVYSFTIRMKSFCKTSRPHAALRLLNNMSSQG 176
Query: 155 CSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGA 214
C + +++ ++ + AE EL+G+M GV+ T+ L+ + V +
Sbjct: 177 CEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECE 236
Query: 215 TYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-LKMDDASYKFMMKAL 273
K++ G+ PNL YN + L Q G LD A ++++ K D +Y ++ L
Sbjct: 237 KLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGL 296
Query: 274 SDGGKLDEILEIVGGILDDG 293
K E +G ++++G
Sbjct: 297 CKNSKFQEAEVYLGKMVNEG 316
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 119/265 (44%), Gaps = 41/265 (15%)
Query: 65 EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124
+A+E +N ++ + K + SV++ L GKF+ ++ M+ V +
Sbjct: 22 KALEMFN-SMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGVYV 80
Query: 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGE 184
G+ Y +G+ ++A+ VF +M Y C P S+N ++ L +G +A ++Y
Sbjct: 81 GAMK----NYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMR 136
Query: 185 MSDKGVNPDEYTYGLLMDA-C----------------------------------FEVNR 209
M D+G+ PD Y++ + M + C +E N
Sbjct: 137 MRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENF 196
Query: 210 VDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDA-SYKF 268
+G F KM+ SG+ L+ +N+L+ L + G + E + D ++K+ + + +Y
Sbjct: 197 KAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNL 256
Query: 269 MMKALSDGGKLDEILEIVGGILDDG 293
++ L G+LD + +VG +++ G
Sbjct: 257 FIQGLCQRGELDGAVRMVGCLIEQG 281
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 85/219 (38%), Gaps = 37/219 (16%)
Query: 8 ADPVVYSY--LMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEE 65
DP VY+Y L+ G + + V ++ + EK G + + L++ +E
Sbjct: 492 VDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEK--GCAPNLFTFNILLESLCRYRKLDE 549
Query: 66 AMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEH-----NPPKRL 120
A+ E +N SV AV +++D C NG D A LF +M+ + P +
Sbjct: 550 ALGLLEEM--KNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNI 607
Query: 121 AVN----------------------LG----SFNVMADGYCGQGRFKDAIEVFRKMGEYR 154
++ LG ++ +M DG+C G + +M E
Sbjct: 608 IIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENG 667
Query: 155 CSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPD 193
P + +I+ LC + EA + M KG+ P+
Sbjct: 668 FIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPE 706
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.133 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,007,619
Number of Sequences: 539616
Number of extensions: 6483251
Number of successful extensions: 34854
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 388
Number of HSP's that attempted gapping in prelim test: 27075
Number of HSP's gapped (non-prelim): 3567
length of query: 407
length of database: 191,569,459
effective HSP length: 120
effective length of query: 287
effective length of database: 126,815,539
effective search space: 36396059693
effective search space used: 36396059693
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)