Query 015416
Match_columns 407
No_of_seqs 663 out of 2654
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 06:06:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015416.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015416hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 3E-50 6.5E-55 391.5 44.6 326 1-336 463-791 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 2.5E-49 5.3E-54 385.1 42.0 316 8-333 435-753 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 4.9E-48 1.1E-52 373.0 30.7 361 1-389 149-559 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 4.9E-47 1.1E-51 374.4 33.3 368 1-390 279-723 (857)
5 PLN03081 pentatricopeptide (PP 100.0 8.9E-46 1.9E-50 357.3 31.0 308 5-328 118-455 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 8.3E-44 1.8E-48 351.5 31.2 306 3-326 215-616 (857)
7 TIGR02917 PEP_TPR_lipo putativ 99.9 6.6E-24 1.4E-28 213.6 40.8 348 10-385 533-898 (899)
8 KOG4626 O-linked N-acetylgluco 99.9 1.1E-24 2.4E-29 190.8 29.0 358 9-394 115-492 (966)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 1.4E-23 3E-28 211.3 41.2 296 14-326 435-730 (899)
10 PRK11788 tetratricopeptide rep 99.9 2E-22 4.4E-27 183.0 36.7 302 16-332 41-351 (389)
11 PRK15174 Vi polysaccharide exp 99.9 3.7E-22 8.1E-27 190.1 37.4 299 14-329 46-348 (656)
12 TIGR00990 3a0801s09 mitochondr 99.9 2.6E-21 5.6E-26 184.9 41.0 361 12-393 129-577 (615)
13 PRK15174 Vi polysaccharide exp 99.9 6.5E-21 1.4E-25 181.7 41.6 314 9-339 75-392 (656)
14 PRK11788 tetratricopeptide rep 99.9 2.3E-21 5E-26 176.1 30.4 282 8-300 67-354 (389)
15 TIGR00990 3a0801s09 mitochondr 99.9 4.7E-19 1E-23 169.4 40.3 276 6-291 156-495 (615)
16 KOG4626 O-linked N-acetylgluco 99.9 9.1E-21 2E-25 166.5 25.6 289 23-329 197-486 (966)
17 PRK11447 cellulose synthase su 99.9 8.8E-19 1.9E-23 178.2 39.2 306 9-328 302-700 (1157)
18 PRK11447 cellulose synthase su 99.9 1.4E-18 3.1E-23 176.7 38.5 298 16-328 275-666 (1157)
19 PRK10049 pgaA outer membrane p 99.9 5.1E-18 1.1E-22 165.4 37.4 340 8-388 47-457 (765)
20 PRK10049 pgaA outer membrane p 99.8 2.3E-16 5.1E-21 153.8 40.0 318 7-334 80-462 (765)
21 PRK10747 putative protoheme IX 99.8 8E-16 1.7E-20 138.7 33.3 282 23-326 97-388 (398)
22 PRK09782 bacteriophage N4 rece 99.8 1.5E-15 3.2E-20 148.9 36.8 306 9-329 375-707 (987)
23 KOG1126 DNA-binding cell divis 99.8 5.5E-17 1.2E-21 144.4 23.4 289 25-331 334-623 (638)
24 PF13429 TPR_15: Tetratricopep 99.8 1.9E-18 4.1E-23 149.1 13.4 262 52-326 13-275 (280)
25 PRK09782 bacteriophage N4 rece 99.8 1.8E-15 3.9E-20 148.2 35.0 280 30-327 458-739 (987)
26 PRK14574 hmsH outer membrane p 99.8 6.7E-15 1.5E-19 141.4 38.1 330 20-363 44-498 (822)
27 TIGR00540 hemY_coli hemY prote 99.8 3E-15 6.5E-20 135.8 33.4 288 21-326 95-397 (409)
28 PF13429 TPR_15: Tetratricopep 99.8 3.3E-18 7.2E-23 147.6 12.5 267 8-291 7-276 (280)
29 KOG1155 Anaphase-promoting com 99.8 8.2E-15 1.8E-19 125.3 31.1 297 17-328 234-536 (559)
30 KOG1155 Anaphase-promoting com 99.7 2.7E-14 5.8E-19 122.2 31.6 304 7-327 161-494 (559)
31 PRK14574 hmsH outer membrane p 99.7 9.1E-14 2E-18 133.7 37.2 295 17-326 109-477 (822)
32 KOG2076 RNA polymerase III tra 99.7 2.7E-14 5.9E-19 131.5 31.8 337 8-383 137-508 (895)
33 KOG2002 TPR-containing nuclear 99.7 5.9E-14 1.3E-18 130.2 33.5 301 8-320 268-585 (1018)
34 COG2956 Predicted N-acetylgluc 99.7 7.9E-14 1.7E-18 114.1 30.3 294 23-331 48-350 (389)
35 KOG1126 DNA-binding cell divis 99.7 3.8E-15 8.3E-20 132.9 24.0 267 11-293 354-621 (638)
36 COG3071 HemY Uncharacterized e 99.7 3.4E-13 7.3E-18 113.7 31.7 285 23-326 97-388 (400)
37 KOG2003 TPR repeat-containing 99.7 6.4E-14 1.4E-18 119.7 27.2 293 18-328 427-722 (840)
38 KOG2002 TPR-containing nuclear 99.7 6.8E-14 1.5E-18 129.8 29.3 312 8-328 412-745 (1018)
39 PRK12370 invasion protein regu 99.7 1.1E-13 2.3E-18 130.4 30.0 270 45-331 254-538 (553)
40 KOG0547 Translocase of outer m 99.7 1.5E-13 3.2E-18 118.5 27.6 366 13-400 118-579 (606)
41 PRK10747 putative protoheme IX 99.7 6.1E-13 1.3E-17 120.1 32.6 266 13-292 121-390 (398)
42 KOG2076 RNA polymerase III tra 99.7 6.5E-13 1.4E-17 122.6 32.0 310 7-326 170-510 (895)
43 TIGR00540 hemY_coli hemY prote 99.7 1E-12 2.2E-17 119.3 31.5 269 7-291 114-398 (409)
44 COG2956 Predicted N-acetylgluc 99.6 6.3E-13 1.4E-17 108.9 26.5 257 59-325 47-308 (389)
45 KOG1129 TPR repeat-containing 99.6 3E-14 6.4E-19 116.7 18.8 230 51-292 227-458 (478)
46 PRK12370 invasion protein regu 99.6 4.8E-13 1E-17 126.1 29.6 267 9-292 255-535 (553)
47 KOG4422 Uncharacterized conser 99.6 4.4E-12 9.5E-17 107.9 31.3 308 6-329 203-552 (625)
48 TIGR02521 type_IV_pilW type IV 99.6 6.6E-13 1.4E-17 111.5 25.8 202 45-257 29-231 (234)
49 KOG1173 Anaphase-promoting com 99.6 1.6E-12 3.5E-17 114.1 28.2 284 5-305 239-528 (611)
50 KOG2003 TPR repeat-containing 99.6 5.2E-13 1.1E-17 114.2 24.3 189 135-329 501-690 (840)
51 TIGR02521 type_IV_pilW type IV 99.6 1.2E-12 2.5E-17 110.0 26.5 197 126-326 33-230 (234)
52 KOG1129 TPR repeat-containing 99.6 7E-13 1.5E-17 108.8 19.9 235 9-258 222-458 (478)
53 KOG0495 HAT repeat protein [RN 99.6 7.5E-11 1.6E-15 105.6 33.7 306 4-327 473-781 (913)
54 KOG0547 Translocase of outer m 99.6 8.6E-11 1.9E-15 101.7 31.7 221 97-328 339-566 (606)
55 KOG0495 HAT repeat protein [RN 99.6 1.1E-10 2.4E-15 104.5 33.1 297 11-326 517-814 (913)
56 KOG1173 Anaphase-promoting com 99.5 1.7E-11 3.6E-16 107.9 26.9 273 45-331 242-521 (611)
57 KOG4422 Uncharacterized conser 99.5 9.2E-11 2E-15 100.0 30.3 306 11-329 117-463 (625)
58 KOG1174 Anaphase-promoting com 99.5 4.5E-11 9.8E-16 101.3 27.9 308 7-332 191-504 (564)
59 PRK11189 lipoprotein NlpI; Pro 99.5 1.9E-11 4.1E-16 105.8 25.9 227 61-303 40-274 (296)
60 PRK11189 lipoprotein NlpI; Pro 99.5 5.3E-11 1.1E-15 103.0 28.5 199 49-263 66-270 (296)
61 PF12569 NARP1: NMDA receptor- 99.5 1.6E-10 3.4E-15 105.7 32.5 292 16-326 10-332 (517)
62 COG3071 HemY Uncharacterized e 99.5 7.7E-11 1.7E-15 99.7 28.0 285 59-385 96-388 (400)
63 KOG1840 Kinesin light chain [C 99.5 2.5E-11 5.4E-16 109.6 26.8 251 81-331 196-482 (508)
64 KOG1840 Kinesin light chain [C 99.5 2.1E-11 4.6E-16 110.0 24.9 245 46-291 198-478 (508)
65 cd05804 StaR_like StaR_like; a 99.5 8.2E-10 1.8E-14 99.2 34.8 305 11-329 7-337 (355)
66 COG3063 PilF Tfp pilus assembl 99.5 7.9E-11 1.7E-15 92.4 24.1 201 49-260 37-238 (250)
67 COG3063 PilF Tfp pilus assembl 99.5 6.9E-11 1.5E-15 92.7 23.7 199 86-292 37-236 (250)
68 KOG1915 Cell cycle control pro 99.5 8E-10 1.7E-14 95.6 32.2 317 6-330 170-538 (677)
69 KOG1174 Anaphase-promoting com 99.5 1.3E-10 2.9E-15 98.6 25.9 270 6-292 228-500 (564)
70 KOG0624 dsRNA-activated protei 99.4 1.4E-09 3E-14 90.4 28.7 332 14-358 42-403 (504)
71 PF12569 NARP1: NMDA receptor- 99.4 3E-10 6.4E-15 103.9 26.3 261 53-329 10-292 (517)
72 KOG1125 TPR repeat-containing 99.4 1.3E-10 2.9E-15 102.8 20.2 258 53-321 291-564 (579)
73 KOG4340 Uncharacterized conser 99.4 3.4E-09 7.4E-14 86.5 25.9 279 1-288 1-335 (459)
74 cd05804 StaR_like StaR_like; a 99.3 8.9E-09 1.9E-13 92.5 31.4 318 46-388 5-337 (355)
75 KOG4162 Predicted calmodulin-b 99.3 8.4E-09 1.8E-13 94.5 29.7 358 6-401 319-793 (799)
76 KOG1125 TPR repeat-containing 99.3 4.1E-10 9E-15 99.7 20.5 255 18-284 293-563 (579)
77 PF13041 PPR_2: PPR repeat fam 99.3 5.2E-12 1.1E-16 77.1 5.4 50 8-59 1-50 (50)
78 PF13041 PPR_2: PPR repeat fam 99.3 1E-11 2.2E-16 75.8 6.6 49 157-205 1-49 (50)
79 KOG4318 Bicoid mRNA stability 99.3 6.5E-10 1.4E-14 103.0 20.3 253 1-278 16-286 (1088)
80 KOG1156 N-terminal acetyltrans 99.3 4.2E-08 9E-13 88.4 30.8 97 231-329 373-469 (700)
81 PF04733 Coatomer_E: Coatomer 99.3 1.3E-09 2.7E-14 93.2 19.5 252 18-292 9-265 (290)
82 KOG2047 mRNA splicing factor [ 99.2 5.8E-07 1.2E-11 81.2 34.5 308 11-328 249-615 (835)
83 PF04733 Coatomer_E: Coatomer 99.2 7.2E-09 1.6E-13 88.6 21.4 252 55-329 9-266 (290)
84 KOG0548 Molecular co-chaperone 99.2 3.7E-08 8.1E-13 86.9 25.7 92 236-329 365-456 (539)
85 KOG1915 Cell cycle control pro 99.2 7.8E-07 1.7E-11 77.6 32.5 299 15-329 146-501 (677)
86 PLN02789 farnesyltranstransfer 99.2 1E-07 2.2E-12 82.6 27.1 204 60-275 50-267 (320)
87 KOG1128 Uncharacterized conser 99.1 8.1E-09 1.8E-13 94.1 20.0 225 80-330 394-618 (777)
88 TIGR03302 OM_YfiO outer membra 99.1 1.1E-08 2.4E-13 86.0 20.0 191 9-223 32-232 (235)
89 PRK04841 transcriptional regul 99.1 2.4E-07 5.2E-12 93.9 32.5 316 14-329 413-761 (903)
90 KOG1128 Uncharacterized conser 99.1 2.8E-08 6.1E-13 90.7 22.6 237 6-273 394-633 (777)
91 KOG1070 rRNA processing protei 99.1 8.4E-08 1.8E-12 93.4 26.5 224 67-299 1444-1669(1710)
92 KOG2376 Signal recognition par 99.1 8.9E-07 1.9E-11 79.2 30.9 121 16-152 18-138 (652)
93 KOG0624 dsRNA-activated protei 99.1 5.8E-07 1.3E-11 75.2 27.8 273 8-293 67-371 (504)
94 PLN02789 farnesyltranstransfer 99.1 2.9E-07 6.2E-12 79.9 27.5 215 12-241 39-267 (320)
95 KOG3785 Uncharacterized conser 99.1 2E-07 4.4E-12 78.2 25.1 300 15-330 62-459 (557)
96 KOG4162 Predicted calmodulin-b 99.1 1.5E-06 3.3E-11 80.2 32.6 126 199-327 655-782 (799)
97 TIGR03302 OM_YfiO outer membra 99.1 5.1E-08 1.1E-12 82.0 21.8 105 45-152 31-143 (235)
98 PRK14720 transcript cleavage f 99.1 7.6E-08 1.6E-12 92.7 24.9 221 8-274 29-268 (906)
99 KOG1156 N-terminal acetyltrans 99.1 1.2E-06 2.7E-11 79.2 29.1 247 13-274 11-264 (700)
100 KOG2047 mRNA splicing factor [ 99.0 5.6E-06 1.2E-10 75.0 32.4 306 11-331 388-722 (835)
101 PRK10370 formate-dependent nit 99.0 9.7E-08 2.1E-12 77.1 19.6 157 16-197 22-181 (198)
102 COG5010 TadD Flp pilus assembl 99.0 5.4E-08 1.2E-12 78.4 17.4 165 46-222 66-230 (257)
103 KOG0548 Molecular co-chaperone 99.0 2.9E-06 6.3E-11 75.3 29.2 298 18-332 10-425 (539)
104 PRK04841 transcriptional regul 99.0 1.9E-06 4.2E-11 87.4 32.4 306 20-328 384-720 (903)
105 PRK15179 Vi polysaccharide bio 99.0 5.6E-07 1.2E-11 85.9 26.4 134 191-328 83-217 (694)
106 PRK15359 type III secretion sy 99.0 5.4E-08 1.2E-12 74.4 15.9 109 31-154 14-122 (144)
107 COG5010 TadD Flp pilus assembl 99.0 2.8E-07 6E-12 74.4 19.6 158 88-254 70-227 (257)
108 PRK14720 transcript cleavage f 99.0 3.4E-07 7.3E-12 88.3 23.8 233 45-310 29-268 (906)
109 KOG1070 rRNA processing protei 99.0 6.8E-07 1.5E-11 87.4 25.4 229 105-345 1445-1681(1710)
110 PRK15359 type III secretion sy 98.9 1.1E-07 2.3E-12 72.7 15.3 95 197-292 27-121 (144)
111 KOG1914 mRNA cleavage and poly 98.9 2.5E-05 5.5E-10 69.6 31.3 130 195-326 367-499 (656)
112 PRK10370 formate-dependent nit 98.9 5.9E-08 1.3E-12 78.4 14.4 128 23-163 52-182 (198)
113 PF12854 PPR_1: PPR repeat 98.9 2.1E-09 4.7E-14 58.9 3.7 34 4-37 1-34 (34)
114 KOG2376 Signal recognition par 98.9 1.3E-05 2.9E-10 72.0 29.2 297 22-328 91-487 (652)
115 KOG3081 Vesicle coat complex C 98.9 2.4E-06 5.2E-11 69.1 22.3 152 130-291 114-270 (299)
116 KOG3081 Vesicle coat complex C 98.9 2.5E-06 5.5E-11 69.0 21.6 250 54-327 15-270 (299)
117 PRK15179 Vi polysaccharide bio 98.9 6E-07 1.3E-11 85.8 21.1 147 42-199 81-227 (694)
118 KOG4318 Bicoid mRNA stability 98.8 3.2E-07 6.9E-12 85.7 17.8 260 31-323 11-295 (1088)
119 KOG3785 Uncharacterized conser 98.8 1E-05 2.2E-10 68.2 24.6 192 129-328 290-490 (557)
120 KOG1127 TPR repeat-containing 98.8 1.9E-06 4.2E-11 81.6 21.8 305 12-331 494-882 (1238)
121 TIGR02552 LcrH_SycD type III s 98.8 5.1E-07 1.1E-11 68.6 14.4 94 87-187 20-113 (135)
122 KOG3617 WD40 and TPR repeat-co 98.7 1.2E-05 2.7E-10 75.0 24.8 284 9-326 756-1107(1416)
123 COG4783 Putative Zn-dependent 98.7 2.8E-05 6.1E-10 68.6 25.8 112 170-284 317-429 (484)
124 KOG3060 Uncharacterized conser 98.7 7.5E-06 1.6E-10 65.8 20.1 191 22-223 24-220 (289)
125 PF09976 TPR_21: Tetratricopep 98.7 4.4E-07 9.6E-12 69.7 12.8 132 11-150 13-144 (145)
126 KOG3060 Uncharacterized conser 98.7 2.6E-05 5.7E-10 62.8 22.5 188 61-257 26-219 (289)
127 TIGR02552 LcrH_SycD type III s 98.7 7.3E-07 1.6E-11 67.7 13.6 116 32-161 5-120 (135)
128 KOG4340 Uncharacterized conser 98.7 9.2E-06 2E-10 66.9 19.6 263 49-324 12-335 (459)
129 COG4783 Putative Zn-dependent 98.7 1.8E-05 4E-10 69.7 22.4 242 17-292 209-454 (484)
130 TIGR02795 tol_pal_ybgF tol-pal 98.7 1.2E-06 2.6E-11 64.8 13.5 106 11-116 3-108 (119)
131 PF09976 TPR_21: Tetratricopep 98.6 1.5E-06 3.2E-11 66.7 13.8 130 50-185 15-144 (145)
132 PF12854 PPR_1: PPR repeat 98.6 6.2E-08 1.3E-12 53.0 4.1 32 154-185 2-33 (34)
133 KOG1127 TPR repeat-containing 98.6 3.1E-05 6.7E-10 73.9 23.7 222 98-327 472-699 (1238)
134 KOG0550 Molecular chaperone (D 98.6 1.5E-05 3.2E-10 68.7 19.7 295 53-361 55-385 (486)
135 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 2.2E-06 4.7E-11 76.0 15.4 126 12-152 171-296 (395)
136 TIGR02795 tol_pal_ybgF tol-pal 98.6 3.9E-06 8.5E-11 62.0 13.7 104 48-154 3-106 (119)
137 KOG0985 Vesicle coat protein c 98.5 0.00022 4.7E-09 68.5 27.0 231 48-323 1105-1336(1666)
138 KOG0550 Molecular chaperone (D 98.5 4.8E-05 1E-09 65.6 20.3 269 15-293 54-351 (486)
139 KOG1130 Predicted G-alpha GTPa 98.5 1.7E-06 3.8E-11 74.2 11.1 271 55-329 25-345 (639)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 1.3E-05 2.9E-10 71.1 16.3 122 199-326 174-295 (395)
141 KOG3616 Selective LIM binding 98.4 2.2E-05 4.7E-10 72.5 17.5 51 271-325 858-908 (1636)
142 KOG2053 Mitochondrial inherita 98.4 0.00051 1.1E-08 65.2 26.1 222 59-292 21-255 (932)
143 KOG3617 WD40 and TPR repeat-co 98.4 8.6E-05 1.9E-09 69.6 20.8 243 9-291 725-995 (1416)
144 COG3898 Uncharacterized membra 98.4 0.0011 2.3E-08 57.3 31.0 294 13-329 85-393 (531)
145 PRK15363 pathogenicity island 98.4 3E-05 6.6E-10 58.5 14.5 99 46-153 34-132 (157)
146 KOG1130 Predicted G-alpha GTPa 98.4 3.7E-06 8E-11 72.2 10.8 266 18-291 25-343 (639)
147 KOG0985 Vesicle coat protein c 98.4 0.002 4.3E-08 62.3 29.3 282 11-329 937-1250(1666)
148 KOG3616 Selective LIM binding 98.4 0.00021 4.5E-09 66.3 22.3 190 96-324 744-933 (1636)
149 PRK15363 pathogenicity island 98.4 3.6E-05 7.9E-10 58.1 14.6 95 197-292 38-132 (157)
150 cd00189 TPR Tetratricopeptide 98.3 1.1E-05 2.5E-10 56.5 10.7 95 13-113 3-97 (100)
151 PRK10866 outer membrane biogen 98.3 0.0006 1.3E-08 57.1 21.9 188 46-255 31-238 (243)
152 cd00189 TPR Tetratricopeptide 98.3 1.6E-05 3.6E-10 55.7 11.0 91 199-290 5-95 (100)
153 PF12895 Apc3: Anaphase-promot 98.3 2.9E-06 6.4E-11 58.2 6.1 80 242-324 2-83 (84)
154 PF05843 Suf: Suppressor of fo 98.2 3.3E-05 7.1E-10 66.3 13.6 129 196-327 3-135 (280)
155 COG4700 Uncharacterized protei 98.2 0.00082 1.8E-08 51.8 19.2 155 167-326 64-220 (251)
156 PF12895 Apc3: Anaphase-promot 98.2 4.1E-06 8.8E-11 57.5 6.4 82 23-109 2-83 (84)
157 PLN03088 SGT1, suppressor of 98.2 7.2E-05 1.6E-09 66.6 15.7 90 202-292 10-99 (356)
158 PLN03088 SGT1, suppressor of 98.2 4.4E-05 9.4E-10 68.0 14.3 93 17-115 9-101 (356)
159 PRK10803 tol-pal system protei 98.2 3.7E-05 8E-10 64.8 12.9 107 10-116 143-249 (263)
160 PF14938 SNAP: Soluble NSF att 98.2 0.00018 3.9E-09 62.0 17.4 27 12-38 37-63 (282)
161 PRK02603 photosystem I assembl 98.2 8.8E-05 1.9E-09 58.8 14.1 101 48-154 36-150 (172)
162 PRK02603 photosystem I assembl 98.2 7.3E-05 1.6E-09 59.3 13.3 119 83-209 34-166 (172)
163 CHL00033 ycf3 photosystem I as 98.2 2.9E-05 6.4E-10 61.3 10.9 103 26-135 15-117 (168)
164 PRK10866 outer membrane biogen 98.2 0.0012 2.6E-08 55.3 21.0 185 84-290 32-239 (243)
165 PRK10153 DNA-binding transcrip 98.2 0.00013 2.9E-09 67.8 16.5 137 42-187 332-481 (517)
166 KOG2053 Mitochondrial inherita 98.2 0.0082 1.8E-07 57.4 30.4 226 21-262 20-259 (932)
167 PF13525 YfiO: Outer membrane 98.1 0.00038 8.2E-09 56.8 17.1 64 16-79 11-74 (203)
168 CHL00033 ycf3 photosystem I as 98.1 0.00013 2.9E-09 57.6 13.8 97 10-109 35-138 (168)
169 TIGR00756 PPR pentatricopeptid 98.1 4.9E-06 1.1E-10 46.1 4.0 33 12-46 2-34 (35)
170 PF12688 TPR_5: Tetratrico pep 98.1 0.00028 6.1E-09 51.4 13.8 100 50-152 4-103 (120)
171 KOG0553 TPR repeat-containing 98.1 0.00019 4.1E-09 59.6 14.2 129 55-194 89-221 (304)
172 TIGR00756 PPR pentatricopeptid 98.1 8.8E-06 1.9E-10 45.1 4.5 33 161-193 2-34 (35)
173 KOG1914 mRNA cleavage and poly 98.1 0.0054 1.2E-07 55.3 23.4 130 126-257 368-500 (656)
174 PF12688 TPR_5: Tetratrico pep 98.1 0.0005 1.1E-08 50.1 14.5 87 202-288 9-100 (120)
175 PF13812 PPR_3: Pentatricopept 98.0 9.2E-06 2E-10 44.7 4.2 33 11-45 2-34 (34)
176 PF13812 PPR_3: Pentatricopept 98.0 1E-05 2.2E-10 44.5 4.2 31 161-191 3-33 (34)
177 PF14938 SNAP: Soluble NSF att 98.0 0.00031 6.6E-09 60.6 15.3 125 165-290 120-264 (282)
178 PF05843 Suf: Suppressor of fo 98.0 0.00022 4.7E-09 61.3 14.0 129 49-187 3-135 (280)
179 PF10037 MRP-S27: Mitochondria 98.0 0.0002 4.4E-09 64.0 14.0 124 81-207 63-186 (429)
180 PRK10153 DNA-binding transcrip 98.0 0.00039 8.5E-09 64.8 16.4 134 81-222 334-481 (517)
181 PF13414 TPR_11: TPR repeat; P 98.0 2.7E-05 5.9E-10 51.1 6.4 64 47-113 3-67 (69)
182 COG4235 Cytochrome c biogenesi 98.0 0.00034 7.3E-09 58.5 13.8 112 67-188 142-256 (287)
183 KOG1941 Acetylcholine receptor 98.0 0.00026 5.7E-09 60.2 13.2 228 59-291 18-274 (518)
184 KOG0553 TPR repeat-containing 98.0 0.00015 3.2E-09 60.3 11.6 130 91-229 88-221 (304)
185 COG4235 Cytochrome c biogenesi 98.0 0.00058 1.3E-08 57.1 15.0 115 102-224 140-257 (287)
186 COG4700 Uncharacterized protei 98.0 0.0045 9.7E-08 47.9 18.9 124 83-213 88-212 (251)
187 KOG2796 Uncharacterized conser 97.9 0.0012 2.6E-08 53.8 15.7 130 87-222 180-314 (366)
188 PF10037 MRP-S27: Mitochondria 97.9 0.00025 5.3E-09 63.5 13.0 120 123-242 65-186 (429)
189 PF13432 TPR_16: Tetratricopep 97.9 5.1E-05 1.1E-09 49.0 6.6 58 235-292 3-60 (65)
190 PF13525 YfiO: Outer membrane 97.9 0.0031 6.6E-08 51.4 18.5 70 48-117 6-75 (203)
191 PF13432 TPR_16: Tetratricopep 97.9 8.4E-05 1.8E-09 48.0 7.3 59 53-114 3-61 (65)
192 PRK10803 tol-pal system protei 97.9 0.00056 1.2E-08 57.8 13.9 88 240-327 154-245 (263)
193 PF14559 TPR_19: Tetratricopep 97.9 8.1E-05 1.7E-09 48.6 7.2 53 240-292 2-54 (68)
194 PF13414 TPR_11: TPR repeat; P 97.9 9.4E-05 2E-09 48.4 7.4 63 229-291 3-66 (69)
195 PF08579 RPM2: Mitochondrial r 97.8 0.00045 9.8E-09 48.5 10.2 76 130-205 31-115 (120)
196 PF08579 RPM2: Mitochondrial r 97.8 0.00055 1.2E-08 48.1 10.4 79 163-241 29-116 (120)
197 PF13281 DUF4071: Domain of un 97.8 0.016 3.5E-07 51.0 21.5 187 102-292 121-334 (374)
198 COG1729 Uncharacterized protei 97.8 0.0011 2.4E-08 54.8 13.0 106 10-116 142-247 (262)
199 PRK15331 chaperone protein Sic 97.7 0.0033 7.2E-08 47.9 14.5 92 235-328 43-134 (165)
200 PF14559 TPR_19: Tetratricopep 97.7 0.00015 3.2E-09 47.3 6.2 48 61-111 5-52 (68)
201 PF01535 PPR: PPR repeat; Int 97.7 7.9E-05 1.7E-09 39.8 3.6 28 126-153 2-29 (31)
202 KOG1941 Acetylcholine receptor 97.7 0.021 4.6E-07 49.1 19.3 234 21-257 17-274 (518)
203 PF01535 PPR: PPR repeat; Int 97.6 8E-05 1.7E-09 39.8 3.5 29 161-189 2-30 (31)
204 PF03704 BTAD: Bacterial trans 97.6 0.0034 7.4E-08 48.2 13.8 74 231-304 64-141 (146)
205 PRK15331 chaperone protein Sic 97.6 0.0074 1.6E-07 46.1 14.8 93 199-292 42-134 (165)
206 COG5107 RNA14 Pre-mRNA 3'-end 97.6 0.043 9.4E-07 48.7 28.9 131 195-328 398-531 (660)
207 PF03704 BTAD: Bacterial trans 97.6 0.0084 1.8E-07 46.0 15.3 70 126-196 64-138 (146)
208 PF06239 ECSIT: Evolutionarily 97.6 0.0018 4E-08 51.5 11.4 49 123-171 46-99 (228)
209 KOG2041 WD40 repeat protein [G 97.5 0.04 8.7E-07 51.6 20.9 29 45-73 690-718 (1189)
210 PF13371 TPR_9: Tetratricopept 97.5 0.00052 1.1E-08 45.4 7.0 56 237-292 3-58 (73)
211 PF13512 TPR_18: Tetratricopep 97.5 0.0059 1.3E-07 45.5 12.8 82 11-95 12-93 (142)
212 PF13281 DUF4071: Domain of un 97.5 0.024 5.2E-07 50.0 18.3 176 83-262 140-338 (374)
213 PF13424 TPR_12: Tetratricopep 97.4 0.00053 1.1E-08 46.1 6.1 26 231-256 7-32 (78)
214 PF13371 TPR_9: Tetratricopept 97.4 0.00082 1.8E-08 44.5 6.9 55 19-76 4-58 (73)
215 PRK11906 transcriptional regul 97.4 0.021 4.6E-07 51.2 17.3 164 160-325 252-433 (458)
216 KOG2796 Uncharacterized conser 97.4 0.052 1.1E-06 44.7 23.5 140 161-303 179-323 (366)
217 COG1729 Uncharacterized protei 97.4 0.005 1.1E-07 51.0 12.3 88 206-293 153-245 (262)
218 PF13424 TPR_12: Tetratricopep 97.4 0.00076 1.7E-08 45.3 6.5 63 12-74 7-73 (78)
219 PF04840 Vps16_C: Vps16, C-ter 97.4 0.08 1.7E-06 46.2 24.3 111 195-325 178-288 (319)
220 KOG0543 FKBP-type peptidyl-pro 97.3 0.008 1.7E-07 52.5 13.5 96 229-326 257-353 (397)
221 PF08631 SPO22: Meiosis protei 97.3 0.085 1.8E-06 45.4 25.1 103 125-229 85-192 (278)
222 PF10300 DUF3808: Protein of u 97.3 0.031 6.8E-07 51.9 18.1 164 164-331 193-379 (468)
223 KOG0543 FKBP-type peptidyl-pro 97.3 0.01 2.2E-07 51.8 13.9 126 166-292 215-355 (397)
224 PF06239 ECSIT: Evolutionarily 97.3 0.0069 1.5E-07 48.3 11.8 84 83-171 46-150 (228)
225 KOG1585 Protein required for f 97.3 0.071 1.5E-06 43.4 18.4 207 85-323 32-251 (308)
226 COG4105 ComL DNA uptake lipopr 97.3 0.08 1.7E-06 43.7 20.4 187 8-222 33-232 (254)
227 PLN03098 LPA1 LOW PSII ACCUMUL 97.2 0.011 2.4E-07 52.8 12.9 69 45-113 73-141 (453)
228 COG4105 ComL DNA uptake lipopr 97.2 0.1 2.3E-06 43.0 20.4 68 50-117 37-104 (254)
229 KOG1585 Protein required for f 97.1 0.082 1.8E-06 43.1 15.8 60 11-73 32-97 (308)
230 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.01 2.2E-07 53.1 11.9 63 193-257 74-140 (453)
231 KOG4555 TPR repeat-containing 97.1 0.025 5.5E-07 41.0 11.7 97 237-334 51-150 (175)
232 PF13512 TPR_18: Tetratricopep 97.1 0.032 6.9E-07 41.7 12.3 84 48-136 11-94 (142)
233 COG3898 Uncharacterized membra 97.1 0.19 4.1E-06 44.0 27.0 251 21-292 131-392 (531)
234 KOG2610 Uncharacterized conser 96.9 0.03 6.5E-07 47.7 12.6 117 24-149 117-234 (491)
235 PF12921 ATP13: Mitochondrial 96.9 0.022 4.8E-07 42.0 10.6 95 193-308 1-97 (126)
236 PRK11906 transcriptional regul 96.8 0.21 4.5E-06 45.1 17.6 159 48-219 252-432 (458)
237 KOG1258 mRNA processing protei 96.8 0.41 8.9E-06 44.4 23.6 133 12-153 47-180 (577)
238 PF10300 DUF3808: Protein of u 96.8 0.29 6.4E-06 45.5 19.4 164 126-291 190-375 (468)
239 COG3118 Thioredoxin domain-con 96.8 0.26 5.6E-06 41.6 17.4 152 165-318 140-291 (304)
240 KOG1538 Uncharacterized conser 96.8 0.5 1.1E-05 44.3 19.7 259 6-291 552-845 (1081)
241 KOG2610 Uncharacterized conser 96.7 0.14 3.1E-06 43.7 15.0 149 137-288 116-272 (491)
242 COG0457 NrfG FOG: TPR repeat [ 96.7 0.26 5.6E-06 40.7 29.9 199 127-328 62-265 (291)
243 KOG2280 Vacuolar assembly/sort 96.6 0.73 1.6E-05 44.0 21.7 110 195-323 685-794 (829)
244 PF13428 TPR_14: Tetratricopep 96.5 0.0087 1.9E-07 34.8 5.0 37 232-268 4-40 (44)
245 PF08631 SPO22: Meiosis protei 96.5 0.47 1E-05 40.9 24.9 162 161-325 86-272 (278)
246 PF13428 TPR_14: Tetratricopep 96.5 0.0084 1.8E-07 34.9 4.7 29 49-77 3-31 (44)
247 COG0457 NrfG FOG: TPR repeat [ 96.5 0.4 8.7E-06 39.5 29.4 224 60-292 36-265 (291)
248 KOG4555 TPR repeat-containing 96.4 0.1 2.2E-06 38.0 10.6 96 54-154 50-145 (175)
249 PF04053 Coatomer_WDAD: Coatom 96.4 0.21 4.6E-06 45.8 15.5 158 56-254 270-427 (443)
250 PF04184 ST7: ST7 protein; In 96.4 0.55 1.2E-05 42.7 17.4 57 15-77 173-230 (539)
251 COG4785 NlpI Lipoprotein NlpI, 96.4 0.36 7.9E-06 38.7 16.0 183 94-292 75-266 (297)
252 PF12921 ATP13: Mitochondrial 96.4 0.1 2.2E-06 38.6 11.1 98 158-275 1-100 (126)
253 COG5107 RNA14 Pre-mRNA 3'-end 96.4 0.67 1.5E-05 41.5 22.0 226 44-292 299-531 (660)
254 PF04184 ST7: ST7 protein; In 96.4 0.59 1.3E-05 42.5 17.3 150 52-222 173-323 (539)
255 KOG1538 Uncharacterized conser 96.4 0.67 1.4E-05 43.5 17.9 253 46-327 555-845 (1081)
256 PF04840 Vps16_C: Vps16, C-ter 96.3 0.68 1.5E-05 40.6 23.1 110 161-289 179-288 (319)
257 COG3118 Thioredoxin domain-con 96.3 0.59 1.3E-05 39.5 17.4 52 57-111 144-195 (304)
258 PF07079 DUF1347: Protein of u 96.2 0.93 2E-05 40.7 25.1 262 20-292 16-327 (549)
259 KOG2041 WD40 repeat protein [G 96.1 1.3 2.7E-05 42.2 24.2 280 14-325 764-1083(1189)
260 PF13170 DUF4003: Protein of u 96.1 0.53 1.1E-05 40.8 15.6 50 27-78 79-134 (297)
261 PF10602 RPN7: 26S proteasome 96.1 0.063 1.4E-06 42.5 9.1 66 48-113 37-102 (177)
262 COG4785 NlpI Lipoprotein NlpI, 96.0 0.61 1.3E-05 37.5 16.2 183 55-257 73-265 (297)
263 PF04053 Coatomer_WDAD: Coatom 96.0 0.66 1.4E-05 42.7 16.2 158 18-220 269-428 (443)
264 PF10602 RPN7: 26S proteasome 96.0 0.11 2.4E-06 41.1 9.9 101 11-112 37-141 (177)
265 KOG4234 TPR repeat-containing 95.9 0.22 4.8E-06 39.4 11.0 85 240-326 106-195 (271)
266 COG3629 DnrI DNA-binding trans 95.8 0.15 3.3E-06 43.1 10.4 79 230-308 154-236 (280)
267 COG2976 Uncharacterized protei 95.7 0.77 1.7E-05 36.3 14.0 98 235-335 95-195 (207)
268 PF09205 DUF1955: Domain of un 95.7 0.54 1.2E-05 34.5 14.2 141 171-333 14-154 (161)
269 COG4649 Uncharacterized protei 95.7 0.71 1.5E-05 35.7 13.8 124 95-222 69-195 (221)
270 PF07079 DUF1347: Protein of u 95.6 1.7 3.6E-05 39.2 30.2 116 210-329 396-525 (549)
271 smart00299 CLH Clathrin heavy 95.5 0.78 1.7E-05 34.7 15.6 125 14-170 11-136 (140)
272 smart00299 CLH Clathrin heavy 95.1 1.1 2.4E-05 33.9 16.2 85 128-220 11-95 (140)
273 PF13176 TPR_7: Tetratricopept 95.0 0.06 1.3E-06 29.6 4.0 24 50-73 2-25 (36)
274 PF13431 TPR_17: Tetratricopep 95.0 0.035 7.5E-07 30.1 2.9 27 256-282 6-32 (34)
275 COG2976 Uncharacterized protei 95.0 1.3 2.8E-05 35.1 12.3 95 90-189 95-189 (207)
276 KOG2114 Vacuolar assembly/sort 94.9 2.2 4.7E-05 41.5 15.8 119 88-219 338-456 (933)
277 KOG3941 Intermediate in Toll s 94.8 0.22 4.8E-06 41.6 8.3 73 138-210 86-174 (406)
278 KOG1920 IkappaB kinase complex 94.8 5.3 0.00012 40.7 23.7 57 235-291 971-1027(1265)
279 PF09613 HrpB1_HrpK: Bacterial 94.8 1.4 3E-05 33.9 12.7 56 19-77 19-74 (160)
280 COG3629 DnrI DNA-binding trans 94.8 0.43 9.3E-06 40.5 10.1 58 127-185 156-213 (280)
281 PF13176 TPR_7: Tetratricopept 94.7 0.083 1.8E-06 29.0 4.0 23 266-288 2-24 (36)
282 COG1747 Uncharacterized N-term 94.5 3.8 8.2E-05 37.7 21.2 160 126-292 68-234 (711)
283 KOG4648 Uncharacterized conser 94.5 0.35 7.6E-06 41.6 9.0 91 200-292 103-194 (536)
284 PF13431 TPR_17: Tetratricopep 94.4 0.048 1E-06 29.5 2.6 21 83-103 12-32 (34)
285 PF09613 HrpB1_HrpK: Bacterial 94.4 1.8 3.8E-05 33.3 12.9 50 206-257 22-72 (160)
286 KOG3941 Intermediate in Toll s 94.4 0.56 1.2E-05 39.3 9.6 89 157-245 65-174 (406)
287 KOG4234 TPR repeat-containing 94.3 1.6 3.6E-05 34.7 11.4 57 236-292 141-197 (271)
288 KOG1464 COP9 signalosome, subu 94.3 2.8 6E-05 35.1 19.1 212 42-255 21-257 (440)
289 PF00515 TPR_1: Tetratricopept 94.2 0.093 2E-06 28.3 3.5 28 49-76 3-30 (34)
290 KOG2114 Vacuolar assembly/sort 94.2 3.3 7.1E-05 40.4 15.3 218 12-255 285-516 (933)
291 COG4649 Uncharacterized protei 94.1 2.1 4.7E-05 33.2 15.8 53 240-292 143-196 (221)
292 KOG1550 Extracellular protein 94.0 5.9 0.00013 38.0 23.4 83 22-114 261-358 (552)
293 PF11207 DUF2989: Protein of u 93.9 0.72 1.6E-05 36.8 9.0 82 57-144 117-198 (203)
294 KOG2471 TPR repeat-containing 93.9 2.7 5.9E-05 38.3 13.4 287 18-311 25-381 (696)
295 PF09205 DUF1955: Domain of un 93.5 2.3 4.9E-05 31.4 15.6 140 58-226 13-152 (161)
296 PF07719 TPR_2: Tetratricopept 93.5 0.16 3.4E-06 27.2 3.5 28 49-76 3-30 (34)
297 KOG4642 Chaperone-dependent E3 93.3 2.4 5.2E-05 34.8 11.1 116 168-287 19-141 (284)
298 PF00515 TPR_1: Tetratricopept 93.2 0.28 6.1E-06 26.3 4.3 30 85-114 2-31 (34)
299 COG4455 ImpE Protein of avirul 93.1 0.99 2.1E-05 36.4 8.6 79 12-93 3-81 (273)
300 KOG4570 Uncharacterized conser 93.0 2 4.4E-05 36.7 10.7 96 125-222 65-163 (418)
301 KOG4648 Uncharacterized conser 93.0 0.43 9.3E-06 41.1 6.9 93 18-116 105-197 (536)
302 PF10345 Cohesin_load: Cohesin 92.9 9.8 0.00021 37.1 27.5 292 27-323 38-428 (608)
303 KOG4642 Chaperone-dependent E3 92.8 3.3 7.1E-05 34.1 11.2 119 133-255 19-143 (284)
304 KOG1464 COP9 signalosome, subu 92.6 5.5 0.00012 33.4 16.3 124 96-221 39-172 (440)
305 KOG1550 Extracellular protein 92.6 10 0.00022 36.4 26.3 273 26-329 228-539 (552)
306 PF02284 COX5A: Cytochrome c o 92.5 2.6 5.6E-05 29.4 9.3 41 217-257 33-73 (108)
307 PF02259 FAT: FAT domain; Int 92.4 7.7 0.00017 34.6 21.2 65 158-222 145-212 (352)
308 COG2909 MalT ATP-dependent tra 92.0 14 0.0003 36.7 23.5 198 131-329 422-648 (894)
309 PF07719 TPR_2: Tetratricopept 92.0 0.66 1.4E-05 24.6 4.8 27 265-291 3-29 (34)
310 KOG0276 Vesicle coat complex C 92.0 3.1 6.7E-05 39.0 11.3 29 158-186 665-693 (794)
311 PRK15180 Vi polysaccharide bio 91.8 9.6 0.00021 34.9 13.9 126 17-154 296-421 (831)
312 cd00923 Cyt_c_Oxidase_Va Cytoc 91.8 1.8 3.9E-05 29.8 7.4 31 225-255 38-68 (103)
313 PF11207 DUF2989: Protein of u 91.6 2.4 5.2E-05 33.9 9.1 73 246-319 123-198 (203)
314 PF06552 TOM20_plant: Plant sp 91.6 1.5 3.4E-05 34.2 7.8 75 100-188 51-136 (186)
315 KOG2471 TPR repeat-containing 91.4 4.3 9.4E-05 37.1 11.4 110 131-241 247-381 (696)
316 PRK09687 putative lyase; Provi 91.2 9 0.0002 33.0 26.3 121 158-291 141-262 (280)
317 PF07035 Mic1: Colon cancer-as 91.1 6 0.00013 30.8 14.1 101 31-150 15-115 (167)
318 PF06552 TOM20_plant: Plant sp 91.1 3.3 7.2E-05 32.5 9.2 68 252-328 58-136 (186)
319 PF13374 TPR_10: Tetratricopep 90.2 0.93 2E-05 25.4 4.5 27 231-257 4-30 (42)
320 PF13174 TPR_6: Tetratricopept 90.1 0.73 1.6E-05 24.2 3.8 26 267-292 4-29 (33)
321 PF13374 TPR_10: Tetratricopep 90.1 0.88 1.9E-05 25.5 4.3 27 265-291 4-30 (42)
322 KOG2280 Vacuolar assembly/sort 90.1 20 0.00042 34.9 26.3 311 2-329 424-774 (829)
323 TIGR02561 HrpB1_HrpK type III 90.0 6.9 0.00015 29.7 12.6 51 97-153 23-73 (153)
324 PF02259 FAT: FAT domain; Int 89.7 14 0.00031 32.9 23.3 65 193-257 145-212 (352)
325 PF13170 DUF4003: Protein of u 89.6 13 0.00028 32.3 19.3 136 63-204 78-227 (297)
326 PF10345 Cohesin_load: Cohesin 89.6 22 0.00047 34.8 29.0 272 11-287 60-428 (608)
327 PF13174 TPR_6: Tetratricopept 89.5 0.57 1.2E-05 24.7 3.0 24 53-76 6-29 (33)
328 PF13181 TPR_8: Tetratricopept 89.4 1 2.2E-05 24.0 4.0 27 49-75 3-29 (34)
329 PRK15180 Vi polysaccharide bio 89.2 18 0.00039 33.3 14.1 93 167-261 331-423 (831)
330 KOG4507 Uncharacterized conser 89.0 5.4 0.00012 37.4 10.2 88 95-188 618-705 (886)
331 TIGR02561 HrpB1_HrpK type III 88.9 8.5 0.00018 29.2 11.8 51 242-292 23-73 (153)
332 cd00923 Cyt_c_Oxidase_Va Cytoc 88.8 5.5 0.00012 27.6 7.7 45 177-221 25-69 (103)
333 COG1747 Uncharacterized N-term 88.7 20 0.00044 33.3 24.8 165 157-328 64-234 (711)
334 KOG0686 COP9 signalosome, subu 88.7 17 0.00038 32.5 14.9 161 86-257 152-332 (466)
335 PF13181 TPR_8: Tetratricopept 88.7 1.4 3.1E-05 23.4 4.3 27 265-291 3-29 (34)
336 PF09986 DUF2225: Uncharacteri 88.7 7.3 0.00016 32.0 10.1 24 304-327 170-193 (214)
337 COG4455 ImpE Protein of avirul 88.6 4.5 9.7E-05 32.8 8.3 79 49-133 3-81 (273)
338 KOG0276 Vesicle coat complex C 88.5 6.3 0.00014 37.1 10.3 133 12-186 616-748 (794)
339 PF07035 Mic1: Colon cancer-as 88.2 11 0.00023 29.5 16.5 29 182-210 17-45 (167)
340 PRK10941 hypothetical protein; 88.1 8 0.00017 33.0 10.2 78 51-135 185-262 (269)
341 KOG0551 Hsp90 co-chaperone CNS 87.9 6.3 0.00014 34.2 9.2 98 194-291 81-181 (390)
342 KOG1586 Protein required for f 87.9 14 0.00031 30.5 16.5 22 236-257 161-182 (288)
343 PRK11619 lytic murein transgly 87.8 29 0.00063 34.1 28.0 118 207-327 254-374 (644)
344 PF10579 Rapsyn_N: Rapsyn N-te 87.5 2.1 4.6E-05 28.2 5.0 48 275-322 18-66 (80)
345 PF07721 TPR_4: Tetratricopept 87.3 0.94 2E-05 22.6 2.7 21 303-323 5-25 (26)
346 KOG0890 Protein kinase of the 87.0 58 0.0013 36.6 26.3 290 15-328 1388-1731(2382)
347 PRK10941 hypothetical protein; 86.9 14 0.0003 31.6 11.0 77 232-308 184-260 (269)
348 TIGR03504 FimV_Cterm FimV C-te 86.8 2.6 5.7E-05 24.3 4.6 25 305-329 5-29 (44)
349 KOG4507 Uncharacterized conser 86.7 3.6 7.8E-05 38.5 7.7 88 205-292 618-705 (886)
350 COG3947 Response regulator con 86.6 3.6 7.8E-05 34.9 7.0 57 88-150 283-339 (361)
351 KOG0686 COP9 signalosome, subu 86.3 25 0.00053 31.7 14.0 165 49-222 152-332 (466)
352 PF08424 NRDE-2: NRDE-2, neces 86.3 23 0.0005 31.3 17.4 117 212-329 49-184 (321)
353 PF08424 NRDE-2: NRDE-2, neces 86.1 24 0.00051 31.2 17.5 63 101-170 48-110 (321)
354 PF02284 COX5A: Cytochrome c o 85.9 9.8 0.00021 26.7 9.1 46 177-222 28-73 (108)
355 KOG2396 HAT (Half-A-TPR) repea 85.9 29 0.00064 32.2 27.3 100 226-327 456-558 (568)
356 PF14561 TPR_20: Tetratricopep 85.7 9.3 0.0002 26.3 8.9 59 257-315 16-74 (90)
357 smart00028 TPR Tetratricopepti 85.6 2 4.4E-05 21.6 3.9 27 49-75 3-29 (34)
358 KOG4570 Uncharacterized conser 85.2 5.2 0.00011 34.4 7.4 104 42-152 59-163 (418)
359 COG0790 FOG: TPR repeat, SEL1 84.8 25 0.00055 30.4 24.3 150 59-224 53-221 (292)
360 COG5159 RPN6 26S proteasome re 84.7 24 0.00052 30.1 11.6 128 164-291 8-153 (421)
361 COG0790 FOG: TPR repeat, SEL1 84.5 26 0.00056 30.3 23.9 165 22-208 53-236 (292)
362 PF00637 Clathrin: Region in C 84.1 0.47 1E-05 36.0 1.0 53 166-218 14-66 (143)
363 PRK09687 putative lyase; Provi 83.7 28 0.0006 30.1 28.3 233 8-273 35-277 (280)
364 KOG1308 Hsp70-interacting prot 83.4 0.91 2E-05 39.2 2.4 90 59-157 126-215 (377)
365 KOG1920 IkappaB kinase complex 82.4 66 0.0014 33.4 23.6 89 231-329 941-1029(1265)
366 COG2909 MalT ATP-dependent tra 82.3 58 0.0012 32.7 26.3 267 17-288 367-684 (894)
367 PF13762 MNE1: Mitochondrial s 82.3 20 0.00042 27.3 9.3 94 2-97 29-128 (145)
368 PF04910 Tcf25: Transcriptiona 82.3 38 0.00082 30.5 15.2 104 165-273 109-234 (360)
369 PF10579 Rapsyn_N: Rapsyn N-te 82.0 4 8.8E-05 27.0 4.4 48 59-106 18-65 (80)
370 KOG4279 Serine/threonine prote 81.9 20 0.00044 34.9 10.5 185 101-292 180-395 (1226)
371 PRK13184 pknD serine/threonine 81.7 67 0.0015 33.1 26.5 98 17-118 482-586 (932)
372 PF14561 TPR_20: Tetratricopep 81.7 14 0.00031 25.3 8.8 32 83-114 21-52 (90)
373 KOG1258 mRNA processing protei 81.7 49 0.0011 31.4 30.5 95 14-111 83-178 (577)
374 PF00637 Clathrin: Region in C 81.2 0.55 1.2E-05 35.7 0.4 54 130-183 13-66 (143)
375 TIGR03504 FimV_Cterm FimV C-te 80.7 3.4 7.3E-05 23.9 3.4 25 268-292 4-28 (44)
376 KOG1308 Hsp70-interacting prot 80.6 3 6.4E-05 36.2 4.4 86 206-292 126-211 (377)
377 PF12862 Apc5: Anaphase-promot 80.2 16 0.00036 25.2 7.5 18 273-290 51-68 (94)
378 PF09986 DUF2225: Uncharacteri 80.2 32 0.00069 28.3 11.0 67 231-297 120-199 (214)
379 smart00028 TPR Tetratricopepti 80.0 4.1 9E-05 20.3 3.7 28 86-113 3-30 (34)
380 KOG2396 HAT (Half-A-TPR) repea 79.9 52 0.0011 30.6 21.8 243 30-292 302-559 (568)
381 PF04097 Nic96: Nup93/Nic96; 79.9 64 0.0014 31.6 16.4 87 166-257 265-355 (613)
382 PF13929 mRNA_stabil: mRNA sta 79.8 38 0.00083 29.1 14.3 60 123-182 201-261 (292)
383 KOG1586 Protein required for f 78.2 38 0.00082 28.1 16.8 19 205-223 165-183 (288)
384 PF10255 Paf67: RNA polymerase 77.7 15 0.00033 33.3 8.2 26 231-256 166-191 (404)
385 PF12862 Apc5: Anaphase-promot 77.0 16 0.00035 25.3 6.6 56 20-75 8-69 (94)
386 KOG2063 Vacuolar assembly/sort 76.7 92 0.002 31.7 22.0 118 49-171 506-638 (877)
387 PF07163 Pex26: Pex26 protein; 76.2 49 0.0011 28.3 14.2 90 128-217 87-181 (309)
388 KOG0376 Serine-threonine phosp 76.1 10 0.00022 34.7 6.6 106 53-169 10-115 (476)
389 PF11846 DUF3366: Domain of un 76.0 21 0.00045 28.8 8.0 35 258-292 139-173 (193)
390 COG5159 RPN6 26S proteasome re 74.8 54 0.0012 28.1 13.4 165 128-292 7-194 (421)
391 KOG0376 Serine-threonine phosp 74.4 9.8 0.00021 34.8 6.0 94 16-115 10-103 (476)
392 COG5108 RPO41 Mitochondrial DN 74.0 30 0.00066 33.3 9.2 93 15-112 33-131 (1117)
393 PF11817 Foie-gras_1: Foie gra 73.6 22 0.00048 30.0 7.9 58 232-289 181-244 (247)
394 PF07163 Pex26: Pex26 protein; 73.6 57 0.0012 27.9 12.3 88 90-182 89-181 (309)
395 PF10255 Paf67: RNA polymerase 73.1 26 0.00057 31.8 8.5 61 126-186 124-191 (404)
396 PF09670 Cas_Cas02710: CRISPR- 72.3 77 0.0017 28.8 12.1 51 206-257 143-197 (379)
397 KOG2066 Vacuolar assembly/sort 72.2 1.1E+02 0.0023 30.4 12.4 171 54-257 363-533 (846)
398 KOG1839 Uncharacterized protei 70.3 88 0.0019 33.0 12.0 158 166-323 939-1123(1236)
399 PF14689 SPOB_a: Sensor_kinase 70.1 19 0.00041 22.6 5.1 46 280-328 7-52 (62)
400 KOG0890 Protein kinase of the 70.1 2E+02 0.0044 32.8 24.8 123 52-186 1388-1510(2382)
401 KOG4077 Cytochrome c oxidase, 70.0 41 0.0009 24.8 9.9 51 214-264 69-119 (149)
402 KOG0545 Aryl-hydrocarbon recep 69.4 67 0.0015 26.9 11.7 61 266-328 233-293 (329)
403 KOG4077 Cytochrome c oxidase, 69.3 43 0.00093 24.7 7.7 58 247-306 67-125 (149)
404 PRK11619 lytic murein transgly 69.0 1.2E+02 0.0027 29.9 31.3 116 173-290 255-373 (644)
405 PF11846 DUF3366: Domain of un 68.8 29 0.00063 27.9 7.3 47 281-330 129-175 (193)
406 PF11817 Foie-gras_1: Foie gra 68.8 29 0.00064 29.3 7.6 61 126-186 180-245 (247)
407 smart00386 HAT HAT (Half-A-TPR 68.7 14 0.0003 18.8 4.0 12 280-291 4-15 (33)
408 PF08311 Mad3_BUB1_I: Mad3/BUB 68.5 45 0.00099 24.6 10.4 80 243-324 40-124 (126)
409 cd00280 TRFH Telomeric Repeat 67.8 57 0.0012 25.9 8.1 24 269-292 117-140 (200)
410 cd08819 CARD_MDA5_2 Caspase ac 67.3 37 0.0008 23.1 7.1 66 66-144 21-86 (88)
411 smart00777 Mad3_BUB1_I Mad3/BU 64.0 38 0.00082 25.0 6.3 44 280-323 80-123 (125)
412 KOG4521 Nuclear pore complex, 63.8 2E+02 0.0043 30.3 14.6 128 195-325 984-1128(1480)
413 PF12968 DUF3856: Domain of Un 63.0 57 0.0012 23.8 10.8 22 231-252 57-78 (144)
414 PF14689 SPOB_a: Sensor_kinase 62.6 22 0.00047 22.4 4.3 21 235-255 29-49 (62)
415 COG3947 Response regulator con 62.4 1E+02 0.0023 26.6 17.2 63 265-329 281-343 (361)
416 PF04910 Tcf25: Transcriptiona 62.0 1.2E+02 0.0027 27.3 19.8 161 156-331 37-225 (360)
417 KOG2659 LisH motif-containing 61.9 91 0.002 25.8 9.8 99 191-291 23-131 (228)
418 KOG2063 Vacuolar assembly/sort 61.4 2E+02 0.0043 29.5 16.9 167 126-292 506-713 (877)
419 PF09670 Cas_Cas02710: CRISPR- 61.2 1.3E+02 0.0028 27.4 12.5 57 131-188 138-198 (379)
420 PF14853 Fis1_TPR_C: Fis1 C-te 61.2 34 0.00075 20.7 6.0 26 267-292 5-30 (53)
421 COG0735 Fur Fe2+/Zn2+ uptake r 60.8 72 0.0016 24.3 7.8 57 185-242 12-68 (145)
422 PF13762 MNE1: Mitochondrial s 60.4 74 0.0016 24.2 10.0 24 87-110 42-65 (145)
423 PF14669 Asp_Glu_race_2: Putat 58.8 94 0.002 25.0 14.7 180 3-218 1-205 (233)
424 PF00244 14-3-3: 14-3-3 protei 58.8 1.1E+02 0.0024 25.7 11.3 46 246-291 143-197 (236)
425 PF14853 Fis1_TPR_C: Fis1 C-te 58.7 39 0.00084 20.5 6.3 31 301-331 3-33 (53)
426 KOG0687 26S proteasome regulat 58.6 1.3E+02 0.0028 26.5 14.0 27 231-257 106-132 (393)
427 COG5187 RPN7 26S proteasome re 58.2 1.2E+02 0.0027 26.1 9.8 141 6-152 77-220 (412)
428 PRK13800 putative oxidoreducta 57.9 2.4E+02 0.0052 29.4 26.9 249 45-329 633-882 (897)
429 PF00244 14-3-3: 14-3-3 protei 57.3 1.2E+02 0.0025 25.5 11.3 50 280-329 143-199 (236)
430 KOG3364 Membrane protein invol 57.2 81 0.0018 23.7 10.8 67 226-292 29-100 (149)
431 KOG2422 Uncharacterized conser 56.2 1.9E+02 0.0042 27.7 16.9 155 173-328 252-448 (665)
432 KOG1839 Uncharacterized protei 55.4 2.9E+02 0.0062 29.5 12.7 157 131-287 939-1123(1236)
433 COG5108 RPO41 Mitochondrial DN 55.3 1.3E+02 0.0028 29.4 9.5 76 52-135 33-114 (1117)
434 KOG4567 GTPase-activating prot 55.3 56 0.0012 28.3 6.6 70 214-287 263-342 (370)
435 KOG4814 Uncharacterized conser 54.3 1.3E+02 0.0029 29.2 9.3 90 201-291 361-456 (872)
436 PF09454 Vps23_core: Vps23 cor 54.1 37 0.00081 21.6 4.3 50 44-96 5-54 (65)
437 PF11838 ERAP1_C: ERAP1-like C 53.9 1.5E+02 0.0033 25.9 12.9 59 126-187 171-229 (324)
438 COG4941 Predicted RNA polymera 53.7 1.6E+02 0.0035 26.1 12.9 121 209-331 271-397 (415)
439 KOG2297 Predicted translation 53.5 1.5E+02 0.0033 25.8 14.6 18 265-282 323-340 (412)
440 PF10366 Vps39_1: Vacuolar sor 52.8 83 0.0018 22.5 7.2 27 126-152 41-67 (108)
441 PRK10564 maltose regulon perip 52.6 33 0.00072 29.6 5.0 41 157-197 254-295 (303)
442 COG4259 Uncharacterized protei 51.0 84 0.0018 22.0 6.8 15 238-252 81-95 (121)
443 COG5191 Uncharacterized conser 50.9 72 0.0016 27.8 6.6 68 7-77 104-172 (435)
444 PRK12798 chemotaxis protein; R 50.3 2E+02 0.0044 26.3 23.4 199 137-339 125-335 (421)
445 PF10475 DUF2450: Protein of u 50.2 1.7E+02 0.0037 25.4 11.3 52 130-187 104-155 (291)
446 KOG0551 Hsp90 co-chaperone CNS 50.0 1.8E+02 0.004 25.7 15.3 93 161-255 83-179 (390)
447 KOG3807 Predicted membrane pro 49.3 1.9E+02 0.0041 25.6 13.9 56 165-222 281-339 (556)
448 PHA02875 ankyrin repeat protei 49.3 2.1E+02 0.0046 26.2 14.0 230 1-256 21-265 (413)
449 COG4976 Predicted methyltransf 48.9 53 0.0012 27.2 5.3 56 19-77 4-59 (287)
450 PF11768 DUF3312: Protein of u 48.7 2.5E+02 0.0054 26.8 10.4 25 14-38 412-436 (545)
451 KOG3364 Membrane protein invol 48.6 1.2E+02 0.0025 22.9 9.9 68 82-153 30-100 (149)
452 KOG4567 GTPase-activating prot 47.6 1.3E+02 0.0029 26.2 7.6 71 179-254 263-343 (370)
453 KOG2422 Uncharacterized conser 47.3 2.7E+02 0.0058 26.8 16.2 162 96-257 250-447 (665)
454 PF15297 CKAP2_C: Cytoskeleton 47.1 1.7E+02 0.0036 26.1 8.3 65 27-93 120-184 (353)
455 PF09454 Vps23_core: Vps23 cor 47.0 37 0.00079 21.7 3.4 44 195-239 9-52 (65)
456 PF04190 DUF410: Protein of un 46.5 1.9E+02 0.004 24.7 19.1 25 123-147 89-113 (260)
457 PF11123 DNA_Packaging_2: DNA 46.5 52 0.0011 21.4 3.9 35 23-60 10-44 (82)
458 PRK11639 zinc uptake transcrip 46.3 73 0.0016 25.0 5.8 49 51-101 29-77 (169)
459 PF15297 CKAP2_C: Cytoskeleton 46.1 1.7E+02 0.0038 26.0 8.3 44 126-169 142-185 (353)
460 KOG4521 Nuclear pore complex, 46.1 3.9E+02 0.0085 28.4 13.6 116 53-176 926-1071(1480)
461 PF11768 DUF3312: Protein of u 46.0 1.8E+02 0.0039 27.7 8.8 23 199-221 413-435 (545)
462 PRK12798 chemotaxis protein; R 45.4 2.5E+02 0.0054 25.8 20.5 155 60-222 125-285 (421)
463 COG4259 Uncharacterized protei 45.2 1.1E+02 0.0023 21.6 6.9 50 63-114 53-102 (121)
464 PRK10564 maltose regulon perip 45.2 75 0.0016 27.5 5.9 30 87-116 260-289 (303)
465 PF11663 Toxin_YhaV: Toxin wit 45.0 33 0.00071 25.6 3.3 28 24-55 109-136 (140)
466 TIGR02710 CRISPR-associated pr 44.7 2.5E+02 0.0053 25.6 11.5 53 18-72 138-196 (380)
467 COG5191 Uncharacterized conser 44.6 94 0.002 27.1 6.3 71 43-116 103-174 (435)
468 PF11848 DUF3368: Domain of un 44.6 65 0.0014 18.9 5.1 6 216-221 24-29 (48)
469 PF11663 Toxin_YhaV: Toxin wit 44.3 30 0.00065 25.8 3.0 19 140-158 111-129 (140)
470 PRK09462 fur ferric uptake reg 43.3 82 0.0018 24.0 5.6 16 62-77 32-47 (148)
471 PF04097 Nic96: Nup93/Nic96; 43.1 3.4E+02 0.0074 26.8 16.9 88 200-292 264-356 (613)
472 PRK13800 putative oxidoreducta 43.1 4.1E+02 0.0089 27.7 30.2 216 82-328 633-849 (897)
473 PHA02537 M terminase endonucle 42.7 2E+02 0.0043 24.0 9.6 25 202-226 91-115 (230)
474 PF13929 mRNA_stabil: mRNA sta 42.3 2.3E+02 0.005 24.6 22.7 139 173-311 142-290 (292)
475 COG2178 Predicted RNA-binding 42.3 1.8E+02 0.004 23.4 9.3 77 27-114 20-99 (204)
476 KOG3677 RNA polymerase I-assoc 42.3 1.7E+02 0.0037 26.7 7.8 60 15-74 240-299 (525)
477 KOG2300 Uncharacterized conser 41.3 3.1E+02 0.0067 25.8 23.9 279 10-288 212-552 (629)
478 PTZ00131 glycophorin-binding p 40.8 2.1E+02 0.0046 23.7 21.0 239 46-292 111-405 (413)
479 KOG3636 Uncharacterized conser 40.4 3E+02 0.0065 25.4 9.0 86 188-274 177-271 (669)
480 PRK13342 recombination factor 40.1 3E+02 0.0066 25.4 17.0 45 141-187 154-202 (413)
481 cd08819 CARD_MDA5_2 Caspase ac 38.7 1.3E+02 0.0028 20.6 7.0 67 28-104 20-86 (88)
482 COG5187 RPN7 26S proteasome re 38.7 2.6E+02 0.0057 24.2 11.9 26 195-220 116-141 (412)
483 COG4976 Predicted methyltransf 38.5 2.4E+02 0.0051 23.6 7.7 55 206-262 7-62 (287)
484 KOG2659 LisH motif-containing 38.1 2.3E+02 0.0051 23.5 9.7 68 43-111 22-91 (228)
485 PF07720 TPR_3: Tetratricopept 38.1 70 0.0015 17.4 3.8 19 267-285 5-23 (36)
486 KOG1498 26S proteasome regulat 38.0 3.2E+02 0.0068 24.9 16.4 102 199-300 136-249 (439)
487 PF10516 SHNi-TPR: SHNi-TPR; 37.6 75 0.0016 17.6 3.9 26 49-74 3-28 (38)
488 KOG0545 Aryl-hydrocarbon recep 36.9 2.6E+02 0.0057 23.7 13.3 62 231-292 232-293 (329)
489 PF06957 COPI_C: Coatomer (COP 36.5 3.5E+02 0.0076 25.1 10.4 23 53-75 124-146 (422)
490 PF02184 HAT: HAT (Half-A-TPR) 36.2 72 0.0016 17.0 3.4 13 210-222 3-15 (32)
491 KOG2062 26S proteasome regulat 36.1 4.6E+02 0.01 26.3 16.7 88 204-292 511-600 (929)
492 PF07575 Nucleopor_Nup85: Nup8 35.8 4.2E+02 0.0092 25.8 12.0 31 275-306 507-537 (566)
493 PHA02537 M terminase endonucle 35.6 2.6E+02 0.0057 23.3 9.0 28 164-191 88-115 (230)
494 COG0735 Fur Fe2+/Zn2+ uptake r 35.5 2E+02 0.0043 21.9 7.0 27 128-154 24-50 (145)
495 PRK09462 fur ferric uptake reg 35.5 2E+02 0.0043 21.9 7.8 34 210-243 33-66 (148)
496 PF11838 ERAP1_C: ERAP1-like C 34.5 3.2E+02 0.0069 23.9 19.1 81 140-223 146-230 (324)
497 KOG0687 26S proteasome regulat 34.4 3.3E+02 0.0072 24.1 13.8 143 4-152 64-209 (393)
498 KOG0292 Vesicle coat complex C 33.9 2.4E+02 0.0052 28.7 8.0 45 240-289 654-698 (1202)
499 PF07575 Nucleopor_Nup85: Nup8 33.6 2.8E+02 0.0061 26.9 8.8 22 241-262 507-529 (566)
500 PRK11639 zinc uptake transcrip 33.6 2.4E+02 0.0051 22.2 7.9 34 210-243 41-74 (169)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3e-50 Score=391.49 Aligned_cols=326 Identities=20% Similarity=0.328 Sum_probs=309.4
Q ss_pred CCcCCCCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 015416 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSV 80 (407)
Q Consensus 1 M~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 80 (407)
|.+.|+.||..+|+.||.+|++.|+++.|.++|++|.+. |+.||..+|+.++.+|++.|++++|.++|+.|...+ +
T Consensus 463 M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~--Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G--v 538 (1060)
T PLN03218 463 VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA--GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN--V 538 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC--C
Confidence 567899999999999999999999999999999999998 999999999999999999999999999999999988 8
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 015416 81 KMSAVANNSVLDALCNNGKFDEALKLFDRMKN--EHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD 158 (407)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 158 (407)
.||..+|+.++.+|++.|++++|.++|++|.. .+..| +..+|+.++.+|++.|++++|.++|+.|.+.|++|+
T Consensus 539 ~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-----D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~ 613 (1060)
T PLN03218 539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-----DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT 613 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999986 45555 888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 015416 159 TLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGK 238 (407)
Q Consensus 159 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 238 (407)
..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.|+.+
T Consensus 614 ~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~a 693 (1060)
T PLN03218 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGA 693 (1060)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHH
Q 015416 239 LVQVGMLDEAKSFFDIMVK-KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEE 317 (407)
Q Consensus 239 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 317 (407)
|++.|++++|.++|+.|.. +..|+..+|+.++.+|++.|++++|.++|++|... |+.|+..+|..++.+|.+.|++++
T Consensus 694 y~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~sLL~a~~k~G~le~ 772 (1060)
T PLN03218 694 CSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSILLVASERKDDADV 772 (1060)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999987 78999999999999999999999999999999886 689999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHH
Q 015416 318 VVKLMEKKEREKAEAKARE 336 (407)
Q Consensus 318 A~~~~~~~~~~~~~~~~~~ 336 (407)
|.+++++|.+.+.......
T Consensus 773 A~~l~~~M~k~Gi~pd~~t 791 (1060)
T PLN03218 773 GLDLLSQAKEDGIKPNLVM 791 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHH
Confidence 9999999998876655433
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.5e-49 Score=385.14 Aligned_cols=316 Identities=18% Similarity=0.311 Sum_probs=306.0
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhH
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVAN 87 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (407)
||..+|+.+|.+|++.|+++.|.++|+.|.+. |..||..+|+.|+.+|++.|+++.|.++|++|...+ +.||..+|
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~--Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G--v~PdvvTy 510 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEA--GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG--VEANVHTF 510 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC--CCCCHHHH
Confidence 99999999999999999999999999999998 999999999999999999999999999999999988 89999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhh--CCCCCCHHHHHHH
Q 015416 88 NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGE--YRCSPDTLSFNNL 165 (407)
Q Consensus 88 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~l 165 (407)
+.++.+|++.|++++|.++|++|.+.+..| |..+|+.|+.+|++.|++++|.++|++|.. .|+.||..+|+.+
T Consensus 511 naLI~gy~k~G~~eeAl~lf~~M~~~Gv~P-----D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaL 585 (1060)
T PLN03218 511 GALIDGCARAGQVAKAFGAYGIMRSKNVKP-----DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGAL 585 (1060)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 999999999999999999999999999888 888999999999999999999999999976 6789999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 015416 166 IDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGML 245 (407)
Q Consensus 166 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 245 (407)
+.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++
T Consensus 586 I~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~ 665 (1060)
T PLN03218 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDL 665 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 015416 246 DEAKSFFDIMVK-KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEK 324 (407)
Q Consensus 246 ~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 324 (407)
++|.++|+.|.+ +.+|+..+|+.++.+|++.|++++|.++|++|... ++.|+..+|+.++.+|++.|++++|.+++++
T Consensus 666 eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 666 DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999998 88999999999999999999999999999999886 6899999999999999999999999999999
Q ss_pred HHHhhHHHH
Q 015416 325 KEREKAEAK 333 (407)
Q Consensus 325 ~~~~~~~~~ 333 (407)
|...+..+.
T Consensus 745 M~~~Gi~Pd 753 (1060)
T PLN03218 745 MKRLGLCPN 753 (1060)
T ss_pred HHHcCCCCC
Confidence 988775544
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.9e-48 Score=372.98 Aligned_cols=361 Identities=20% Similarity=0.267 Sum_probs=309.2
Q ss_pred CCcCCCCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--
Q 015416 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENS-- 78 (407)
Q Consensus 1 M~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-- 78 (407)
|.+.|+.||..+|+.|+.+|++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|+++|++|...+.
T Consensus 149 m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~------~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p 222 (697)
T PLN03081 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE------RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA 222 (697)
T ss_pred HHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC------CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC
Confidence 45678999999999999999999999999999988854 5888999999999999999999999999877651
Q ss_pred -------------------------------CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchH
Q 015416 79 -------------------------------SVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSF 127 (407)
Q Consensus 79 -------------------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 127 (407)
++.||..+|+.|+.+|++.|++++|.++|+.|... +..+|
T Consensus 223 ~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~---------~~vt~ 293 (697)
T PLN03081 223 EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK---------TTVAW 293 (697)
T ss_pred ChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC---------ChhHH
Confidence 13445566677888888888888888888887542 67789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 015416 128 NVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEV 207 (407)
Q Consensus 128 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 207 (407)
+.++.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.
T Consensus 294 n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~ 373 (697)
T PLN03081 294 NSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW 373 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHC
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015416 208 NRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK-KLKMDDASYKFMMKALSDGGKLDEILEIV 286 (407)
Q Consensus 208 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 286 (407)
|++++|.++|++|. .||..+|+.|+.+|++.|+.++|.++|++|.. +..||..||..++.+|.+.|++++|.++|
T Consensus 374 G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f 449 (697)
T PLN03081 374 GRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIF 449 (697)
T ss_pred CCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 99999999999885 36888999999999999999999999999988 89999999999999999999999999999
Q ss_pred HHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh----------------HHHHHHHHHHHHHHHHHHHHH
Q 015416 287 GGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREK----------------AEAKAREAEAAEAAKRSARAA 350 (407)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~ 350 (407)
+.|.+.+++.|+..+|..++++|.+.|++++|.+++++|.... ....++...+......|.+..
T Consensus 450 ~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~ 529 (697)
T PLN03081 450 QSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLN 529 (697)
T ss_pred HHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCc
Confidence 9999888899999999999999999999999999999885322 122333333334445565666
Q ss_pred HHhhcCCCcCCCccccccccccChhhHhhHHHHhcCccc
Q 015416 351 IASLIPSKFGDKVGGTEMADNANANEAASVAEAQAGKEV 389 (407)
Q Consensus 351 ~~~~l~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~~~~~ 389 (407)
.|..|.+.|...+ +|++|.++++....+-.
T Consensus 530 ~y~~L~~~y~~~G---------~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 530 NYVVLLNLYNSSG---------RQAEAAKVVETLKRKGL 559 (697)
T ss_pred chHHHHHHHHhCC---------CHHHHHHHHHHHHHcCC
Confidence 7778888888888 99999999998876654
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.9e-47 Score=374.39 Aligned_cols=368 Identities=19% Similarity=0.211 Sum_probs=261.0
Q ss_pred CCcCCCCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 015416 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSV 80 (407)
Q Consensus 1 M~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 80 (407)
|++.|+.||..||+.++.+|++.|+++.|.+++..|.+. |..||..+|+.|+.+|++.|++++|.++|++|.
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~--g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~------ 350 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT--GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME------ 350 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh--CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC------
Confidence 445566666666666666666666666666666666665 666666666666666666666666666666553
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc------------------------------ccccchHHHH
Q 015416 81 KMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL------------------------------AVNLGSFNVM 130 (407)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~l 130 (407)
.||..+|+.++.+|.+.|++++|.++|++|.+.+..|+.. .++..+++.|
T Consensus 351 ~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~L 430 (857)
T PLN03077 351 TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANAL 430 (857)
T ss_pred CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 2345556666666666666666666666665555554211 1144555566
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 015416 131 ADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRV 210 (407)
Q Consensus 131 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 210 (407)
+.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|.+
T Consensus 431 i~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l 505 (857)
T PLN03077 431 IEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGAL 505 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchH
Confidence 6666666666666666665543 4555666666666666666666666666654 3677777777666666655555
Q ss_pred HHHHHHHHHHHHCCC------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cC
Q 015416 211 DDGATYFRKMVDSGL------------------------------RPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK-KL 259 (407)
Q Consensus 211 ~~a~~~~~~~~~~~~------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~ 259 (407)
+.+.+++..+.+.|+ .||..+|+.++.+|++.|+.++|.++|++|.+ +.
T Consensus 506 ~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~ 585 (857)
T PLN03077 506 MCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585 (857)
T ss_pred HHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 555555555544443 46777899999999999999999999999998 89
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh----------
Q 015416 260 KMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREK---------- 329 (407)
Q Consensus 260 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------- 329 (407)
.||..||..++.+|.+.|++++|.++|+.|.+.+|+.|+..+|..++.+|.+.|++++|.+++++|+-..
T Consensus 586 ~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ 665 (857)
T PLN03077 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLN 665 (857)
T ss_pred CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999778999999999999999999999999999999985221
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccccccccccChhhHhhHHHHhcCcccc
Q 015416 330 ------AEAKAREAEAAEAAKRSARAAIASLIPSKFGDKVGGTEMADNANANEAASVAEAQAGKEVN 390 (407)
Q Consensus 330 ------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~~~~~~ 390 (407)
....++...+......|.....+..|+++|...+ +|++|.++++...++...
T Consensus 666 ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g---------~~~~a~~vr~~M~~~g~~ 723 (857)
T PLN03077 666 ACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAG---------KWDEVARVRKTMRENGLT 723 (857)
T ss_pred HHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCC---------ChHHHHHHHHHHHHcCCC
Confidence 1123334444556678888899999999999999 999999999888766443
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8.9e-46 Score=357.30 Aligned_cols=308 Identities=18% Similarity=0.279 Sum_probs=292.5
Q ss_pred CCCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCch
Q 015416 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSA 84 (407)
Q Consensus 5 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 84 (407)
++.||..+|+.++.+|.+.++++.+.+++..|.+. |+.||..+|+.|+.+|++.|+++.|.++|++|. .||.
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~--g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~------~~~~ 189 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESS--GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP------ERNL 189 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC------CCCe
Confidence 47899999999999999999999999999999998 999999999999999999999999999999995 4678
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc------------------------------cccccchHHHHHHHH
Q 015416 85 VANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKR------------------------------LAVNLGSFNVMADGY 134 (407)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~l~~~~ 134 (407)
.+|+.++.+|++.|++++|.++|++|.+.|+.|+. +.++..+++.|+.+|
T Consensus 190 ~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y 269 (697)
T PLN03081 190 ASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMY 269 (697)
T ss_pred eeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHH
Confidence 99999999999999999999999999998877752 234777899999999
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 015416 135 CGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGA 214 (407)
Q Consensus 135 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 214 (407)
++.|++++|.++|++|.. +|..+||.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.
T Consensus 270 ~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 345 (697)
T PLN03081 270 SKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAK 345 (697)
T ss_pred HHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHH
Confidence 999999999999999964 7999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 015416 215 TYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGG 294 (407)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 294 (407)
+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|+.|.+ ||..+|+.++.+|++.|+.++|+++|++|.+. |
T Consensus 346 ~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-g 421 (697)
T PLN03081 346 QAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAE-G 421 (697)
T ss_pred HHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-C
Confidence 9999999999999999999999999999999999999999864 79999999999999999999999999999986 7
Q ss_pred CCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh
Q 015416 295 IEFSEELQEFVKGELSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 295 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 328 (407)
+.|+..+|..++.+|.+.|..++|.++|+.|.+.
T Consensus 422 ~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~ 455 (697)
T PLN03081 422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455 (697)
T ss_pred CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999753
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.3e-44 Score=351.49 Aligned_cols=306 Identities=22% Similarity=0.296 Sum_probs=200.3
Q ss_pred cCCCCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC
Q 015416 3 VKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKM 82 (407)
Q Consensus 3 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 82 (407)
+.|+.||..+||+||.+|++.|+++.|..+|+.|.. ||..+|+.++.+|++.|++++|+++|.+|...+ +.|
T Consensus 215 ~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~------~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g--~~P 286 (857)
T PLN03077 215 RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR------RDCISWNAMISGYFENGECLEGLELFFTMRELS--VDP 286 (857)
T ss_pred HcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC------CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCC
Confidence 445556666666666666666666666666666643 356666666666666666666666666666665 566
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 015416 83 SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSF 162 (407)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 162 (407)
|..+|+.++.+|.+.|+.+.|.+++..+.+.|..| +..+|+.|+.+|++.|++++|.++|++|.. ||..+|
T Consensus 287 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~-----d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~ 357 (857)
T PLN03077 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAV-----DVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSW 357 (857)
T ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc-----chHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeH
Confidence 66666666666666666666666666666666555 666666666666666666666666666643 566666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 015416 163 NNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQV 242 (407)
Q Consensus 163 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 242 (407)
+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.|+.+|++.
T Consensus 358 n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~ 437 (857)
T PLN03077 358 TAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHH-------------------------------hcCC-------------------------------
Q 015416 243 GMLDEAKSFFDIMV-------------------------------KKLK------------------------------- 260 (407)
Q Consensus 243 g~~~~A~~~~~~~~-------------------------------~~~~------------------------------- 260 (407)
|++++|.++|++|. .+.+
T Consensus 438 g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~ 517 (857)
T PLN03077 438 KCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLR 517 (857)
T ss_pred CCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH
Confidence 66666655555443 2223
Q ss_pred ----------------------------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Q 015416 261 ----------------------------------MDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVK 306 (407)
Q Consensus 261 ----------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 306 (407)
+|..+|+.++.+|++.|+.++|+++|++|.+. |+.|+..+|..++
T Consensus 518 ~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~-g~~Pd~~T~~~ll 596 (857)
T PLN03077 518 TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVES-GVNPDEVTFISLL 596 (857)
T ss_pred hCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCcccHHHHH
Confidence 34445666666666677777777777777654 5677777777777
Q ss_pred HHHhhcCcHHHHHHHHHHHH
Q 015416 307 GELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~~~ 326 (407)
.+|.+.|++++|.++|+.|.
T Consensus 597 ~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 597 CACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred HHHhhcChHHHHHHHHHHHH
Confidence 77777777777777777776
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=6.6e-24 Score=213.60 Aligned_cols=348 Identities=14% Similarity=0.087 Sum_probs=189.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHH
Q 015416 10 PVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNS 89 (407)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (407)
..++..+...+.+.|++++|..+++++... .+.+...+..++..+...|++++|+.+++.+.... +.+...|..
T Consensus 533 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~ 606 (899)
T TIGR02917 533 LRAILALAGLYLRTGNEEEAVAWLEKAAEL---NPQEIEPALALAQYYLGKGQLKKALAILNEAADAA---PDSPEAWLM 606 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC---CCCHHHHHH
Confidence 334444444444445555555555444442 22334444445555555555555555555554433 334455555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 015416 90 VLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQL 169 (407)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 169 (407)
++.+|...|++++|...|+++.+..+. +...+..++.+|.+.|++++|..+|+++.+.. +.+..++..++..+
T Consensus 607 l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 679 (899)
T TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQPD------SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLL 679 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 555555555555555555555544322 33345555555555566666666665555543 33445555555555
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015416 170 CKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAK 249 (407)
Q Consensus 170 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 249 (407)
...|++++|..+++.+.+.+ +++...+..++..+...|++++|...|+.+... .|+..++..++.++...|++++|.
T Consensus 680 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 756 (899)
T TIGR02917 680 LAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAV 756 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHH
Confidence 55566666666555555442 334455555566666666666666666666553 233355555666666666666666
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh-
Q 015416 250 SFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKERE- 328 (407)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 328 (407)
..++.+.+..|.+..++..++..|...|++++|..+|+++.+.+ +.+...+..++..+.+.|+ ++|+..++++...
T Consensus 757 ~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 757 KTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA--PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 66666666555566666666666666666666666666666542 4455556666666666666 5566666555321
Q ss_pred -----------------hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccccccccccChhhHhhHHHHhc
Q 015416 329 -----------------KAEAKAREAEAAEAAKRSARAAIASLIPSKFGDKVGGTEMADNANANEAASVAEAQA 385 (407)
Q Consensus 329 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~ 385 (407)
+....+....+......|....++..++..+...| ++++|+.+.+.+.
T Consensus 834 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g---------~~~~A~~~~~~~~ 898 (899)
T TIGR02917 834 PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATG---------RKAEARKELDKLL 898 (899)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC---------CHHHHHHHHHHHh
Confidence 12223333333344444445555555555555555 6777777766543
No 8
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=1.1e-24 Score=190.79 Aligned_cols=358 Identities=16% Similarity=0.155 Sum_probs=287.5
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHH
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANN 88 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
-..+|..+...+...|+++.|+.+|+.+++. -+.....|..+..++...|+.+.|.+.|..+++.+|. ......
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel---~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~---l~ca~s 188 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIEL---KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPD---LYCARS 188 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhc---CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcc---hhhhhc
Confidence 3567888999999999999999999999995 3457889999999999999999999999999987632 333444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 015416 89 SVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQ 168 (407)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 168 (407)
.+...+...|+..+|...|.+.++..+. -..+|..|...+..+|+...|+..|++..+.+ |.=...|-.|+..
T Consensus 189 ~lgnLlka~Grl~ea~~cYlkAi~~qp~------fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV 261 (966)
T KOG4626|consen 189 DLGNLLKAEGRLEEAKACYLKAIETQPC------FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNV 261 (966)
T ss_pred chhHHHHhhcccchhHHHHHHHHhhCCc------eeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHH
Confidence 5666667788889999988888876543 45578888888888899999999888888865 2235678888888
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH
Q 015416 169 LCKNGMLAEAEELYGEMSDKGVNPD-EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPN-LAVYNRLVGKLVQVGMLD 246 (407)
Q Consensus 169 ~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 246 (407)
|...+.++.|+..|.++... .|+ ...+..+...|...|.++-|+..|++.++ +.|+ ...|+.|..++-..|+..
T Consensus 262 ~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ 337 (966)
T KOG4626|consen 262 YKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVT 337 (966)
T ss_pred HHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchH
Confidence 88888888888888888763 444 66788888888888888888888888887 3555 348888888888888888
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015416 247 EAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 247 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 326 (407)
+|.+.+.+.+...+....+.+.|...|...|.+++|..+|...++-+ +--...++.|+..|..+|++++|+..+++..
T Consensus 338 ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~--p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 338 EAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF--PEFAAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--hhhhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 88888888888777778888888888888888888888888888752 4445577788888888888888888888776
Q ss_pred H------------------hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccccccccccChhhHhhHHHHhcCcc
Q 015416 327 R------------------EKAEAKAREAEAAEAAKRSARAAIASLIPSKFGDKVGGTEMADNANANEAASVAEAQAGKE 388 (407)
Q Consensus 327 ~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~~~~ 388 (407)
+ .+....+......+.+..|.-+...++|+++|++.| +..+||+..+.+...+
T Consensus 416 rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsG---------ni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 416 RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSG---------NIPEAIQSYRTALKLK 486 (966)
T ss_pred hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccC---------CcHHHHHHHHHHHccC
Confidence 3 333344445555567778888999999999999999 9999999999998888
Q ss_pred cchhhh
Q 015416 389 VNLEEA 394 (407)
Q Consensus 389 ~~~~~~ 394 (407)
.+.-+|
T Consensus 487 PDfpdA 492 (966)
T KOG4626|consen 487 PDFPDA 492 (966)
T ss_pred CCCchh
Confidence 776555
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=1.4e-23 Score=211.27 Aligned_cols=296 Identities=15% Similarity=0.136 Sum_probs=154.0
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHH
Q 015416 14 SYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDA 93 (407)
Q Consensus 14 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (407)
..++..+.+.|++++|..+++.+... .++++.+|..++.++...|++++|...|+++.+.+ +.+...+..++..
T Consensus 435 ~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la~~ 508 (899)
T TIGR02917 435 LLLILSYLRSGQFDKALAAAKKLEKK---QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE---PDFFPAAANLARI 508 (899)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh---CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC---CCcHHHHHHHHHH
Confidence 33444455555555555555555442 34455555566666666666666666666655544 2234445555555
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 015416 94 LCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNG 173 (407)
Q Consensus 94 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 173 (407)
+...|++++|.+.|+++....+. +..++..++..+.+.|++++|..+|+++...+ +.+...+..++..|...|
T Consensus 509 ~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 581 (899)
T TIGR02917 509 DIQEGNPDDAIQRFEKVLTIDPK------NLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKG 581 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCC
Confidence 55556666666666555554332 33445555555555555555555555554433 334444455555555555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015416 174 MLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFD 253 (407)
Q Consensus 174 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 253 (407)
++++|..+++.+.+. .+.+...|..++.+|...|++++|...|+++.+.. +.+...+..++..+...|++++|..+|+
T Consensus 582 ~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 659 (899)
T TIGR02917 582 QLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLK 659 (899)
T ss_pred CHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555555443 13344455555555555555555555555555432 2234445555555555555555555555
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015416 254 IMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 326 (407)
++....|.+..++..++..+...|++++|.++++.+.... +.+...+..++..+.+.|++++|...++++.
T Consensus 660 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 730 (899)
T TIGR02917 660 RALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH--PKAALGFELEGDLYLRQKDYPAAIQAYRKAL 730 (899)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5555444445555555555555555555555555554432 3344444445555555555555555555543
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=2e-22 Score=183.01 Aligned_cols=302 Identities=15% Similarity=0.108 Sum_probs=247.7
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC--chhhHHHHHHH
Q 015416 16 LMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKM--SAVANNSVLDA 93 (407)
Q Consensus 16 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~ 93 (407)
....+...|++++|+..|.++.+. .+.+..++..++..+...|++++|+.+++.+....+ ..+ ....+..++..
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKV---DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPD-LTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHH
Confidence 344567889999999999999985 345777899999999999999999999999987531 111 13567888999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHH
Q 015416 94 LCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD----TLSFNNLIDQL 169 (407)
Q Consensus 94 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~ 169 (407)
|...|+++.|..+|.++.+..+. +..++..++.++.+.|++++|.+.++.+.+.+..+. ...+..++..+
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 190 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEGDF------AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQA 190 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCCcc------hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 99999999999999999876432 566899999999999999999999999988653222 12456778888
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015416 170 CKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAK 249 (407)
Q Consensus 170 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 249 (407)
...|++++|..+|+++.+.. +.+...+..++..+.+.|++++|.++++++.+.+......++..++.+|...|++++|.
T Consensus 191 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 269 (389)
T PRK11788 191 LARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGL 269 (389)
T ss_pred HhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998753 33466788899999999999999999999997532222457889999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhh---cCcHHHHHHHHHHHH
Q 015416 250 SFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSK---EGREEEVVKLMEKKE 326 (407)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 326 (407)
..++++... .|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..+++++.
T Consensus 270 ~~l~~~~~~-~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 270 EFLRRALEE-YPGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HHHHHHHHh-CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 999999885 355566788999999999999999999999886 5777777766665553 569999999999998
Q ss_pred HhhHHH
Q 015416 327 REKAEA 332 (407)
Q Consensus 327 ~~~~~~ 332 (407)
+.....
T Consensus 346 ~~~~~~ 351 (389)
T PRK11788 346 GEQLKR 351 (389)
T ss_pred HHHHhC
Confidence 877553
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.93 E-value=3.7e-22 Score=190.15 Aligned_cols=299 Identities=12% Similarity=0.072 Sum_probs=229.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHH
Q 015416 14 SYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDA 93 (407)
Q Consensus 14 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (407)
..++..+.+.|++++|..+++..... .+-+...+..++.++...|+++.|+..|+++...+ |.+...+..+..+
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~---~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~---P~~~~a~~~la~~ 119 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLT---AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN---VCQPEDVLLVASV 119 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHh---CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHH
Confidence 34566677888888888888888885 45567777788888888888888888888888876 4466778888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 015416 94 LCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNG 173 (407)
Q Consensus 94 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 173 (407)
+...|++++|...|+++.+..+. +...+..++.++...|++++|...++.+.... +.+...+..+ ..+...|
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~P~------~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g 191 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAFSG------NSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKS 191 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcC
Confidence 88888888888888888876544 55678888888888888888888888876654 2333344333 3477788
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HH
Q 015416 174 MLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDE----AK 249 (407)
Q Consensus 174 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~ 249 (407)
++++|...++.+.+....++...+..++.++...|++++|...++++.+.. +.+...+..++..+...|++++ |.
T Consensus 192 ~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~ 270 (656)
T PRK15174 192 RLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAA 270 (656)
T ss_pred CHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHH
Confidence 888888888888765333344455556677888888888888888888753 4456677888888888888875 78
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 250 SFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
..|+++....|.+..++..++..+...|++++|+..+++++... +.+...+..++.+|.+.|++++|...++++....
T Consensus 271 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 271 EHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 88888888777778888888888888888888888888888763 5556677778888888888888888888877654
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=2.6e-21 Score=184.91 Aligned_cols=361 Identities=13% Similarity=0.042 Sum_probs=279.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHH
Q 015416 12 VYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVL 91 (407)
Q Consensus 12 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (407)
.+......+.+.|++++|+..|++.+.. .|+...|..+..+|...|++++|+..++.+++.+ +.+..+|..+.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~----~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~---p~~~~a~~~~a 201 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC----KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD---PDYSKALNRRA 201 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC---CCCHHHHHHHH
Confidence 3556778899999999999999999874 4678889999999999999999999999999987 45678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCC------------------------ccccccchHHHHHH---------------
Q 015416 92 DALCNNGKFDEALKLFDRMKNEHNPPK------------------------RLAVNLGSFNVMAD--------------- 132 (407)
Q Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~l~~--------------- 132 (407)
.+|...|++++|+..|..+........ ....+...+..+..
T Consensus 202 ~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 202 NAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLE 281 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhh
Confidence 999999999999877655432211000 00000001111100
Q ss_pred ---------------HH------HhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 015416 133 ---------------GY------CGQGRFKDAIEVFRKMGEYR--CSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKG 189 (407)
Q Consensus 133 ---------------~~------~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 189 (407)
.+ ...+++++|++.|+.....+ .+.....|+.++..+...|++++|+..|++.++.
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l- 360 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL- 360 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Confidence 00 12367889999999998764 2334567888899999999999999999999885
Q ss_pred CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 015416 190 VNPD-EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKF 268 (407)
Q Consensus 190 ~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 268 (407)
.|+ ...|..+...+...|++++|...|+++++.. +.+..+|..++..+...|++++|...|++.+...|.+...+..
T Consensus 361 -~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~ 438 (615)
T TIGR00990 361 -DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQ 438 (615)
T ss_pred -CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHH
Confidence 454 6688889999999999999999999998853 4467799999999999999999999999999988888899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhH------------------
Q 015416 269 MMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKA------------------ 330 (407)
Q Consensus 269 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------------ 330 (407)
++.++.+.|++++|+..|++++..+ +.+...+..++.++...|++++|++.+++.....+
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA 516 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHH
Confidence 9999999999999999999999863 66678899999999999999999999998765321
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccccccccccChhhHhhHHHHhcCcccchhh
Q 015416 331 -------EAKAREAEAAEAAKRSARAAIASLIPSKFGDKVGGTEMADNANANEAASVAEAQAGKEVNLEE 393 (407)
Q Consensus 331 -------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~~~~~~~~~ 393 (407)
...+....+......|.....+..++.++...+ ++++|+...++.........+
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g---------~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQG---------DVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcc---------CHHHHHHHHHHHHHHhccHHH
Confidence 112222333333344555555666777777777 899999998888776554333
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=6.5e-21 Score=181.72 Aligned_cols=314 Identities=13% Similarity=0.091 Sum_probs=260.9
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHH
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANN 88 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
+...+..++..+...|+++.|+..|+++... .|.+...+..++..+...|++++|+..|++++... +.+...+.
T Consensus 75 ~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~---~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~---P~~~~a~~ 148 (656)
T PRK15174 75 GRDLLRRWVISPLASSQPDAVLQVVNKLLAV---NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF---SGNSQIFA 148 (656)
T ss_pred chhHHHHHhhhHhhcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHH
Confidence 3445566677778899999999999999996 45578889999999999999999999999999876 45678889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 015416 89 SVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQ 168 (407)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 168 (407)
.++.++...|++++|...++.+....+.+ ...+..+ ..+...|++++|...++.+......++...+..++.+
T Consensus 149 ~la~~l~~~g~~~eA~~~~~~~~~~~P~~------~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~ 221 (656)
T PRK15174 149 LHLRTLVLMDKELQAISLARTQAQEVPPR------GDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDT 221 (656)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHhCCCC------HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 99999999999999999999988776543 2234333 3478899999999999998876533445555666788
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 015416 169 LCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDD----GATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244 (407)
Q Consensus 169 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 244 (407)
+...|++++|+..|+++.+.. +.+...+..+...+...|++++ |...|+++.+.. +.+..++..++..+...|+
T Consensus 222 l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~ 299 (656)
T PRK15174 222 LCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQ 299 (656)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCC
Confidence 999999999999999999864 3457788889999999999986 899999999853 4456799999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 015416 245 LDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEK 324 (407)
Q Consensus 245 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 324 (407)
+++|...++++....|.+...+..+..++...|++++|+..|+++.... +.....+..++.++...|+.++|...+++
T Consensus 300 ~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~ 377 (656)
T PRK15174 300 NEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEH 377 (656)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999778888899999999999999999999999999863 33334455567889999999999999999
Q ss_pred HHHhhHHHHHHHHHH
Q 015416 325 KEREKAEAKAREAEA 339 (407)
Q Consensus 325 ~~~~~~~~~~~~~~~ 339 (407)
..+..+......+.+
T Consensus 378 al~~~P~~~~~~~~e 392 (656)
T PRK15174 378 YIQARASHLPQSFEE 392 (656)
T ss_pred HHHhChhhchhhHHH
Confidence 988766655444443
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=2.3e-21 Score=176.12 Aligned_cols=282 Identities=14% Similarity=0.167 Sum_probs=231.5
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccC---CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCch
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVS---DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSA 84 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 84 (407)
.+..++..+...+...|++++|..+++.+... +..+ ....+..++..|...|++++|+.+|+++.+.. +.+.
T Consensus 67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~---~~~~ 141 (389)
T PRK11788 67 ETVELHLALGNLFRRRGEVDRAIRIHQNLLSR--PDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG---DFAE 141 (389)
T ss_pred ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC---cchH
Confidence 35567899999999999999999999999874 2111 12567889999999999999999999999865 5577
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 015416 85 VANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNN 164 (407)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 164 (407)
.++..++.++.+.|++++|.+.++.+.+.++.+... .....+..++..+.+.|++++|..+|+++.+.. +.+...+..
T Consensus 142 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 219 (389)
T PRK11788 142 GALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV-EIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASIL 219 (389)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHH
Confidence 889999999999999999999999999876543210 012245678888999999999999999998864 445678888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 015416 165 LIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244 (407)
Q Consensus 165 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 244 (407)
++..+.+.|++++|.++|+++.+.+......++..++.+|...|++++|...++++.+. .|+...+..++..+.+.|+
T Consensus 220 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~ 297 (389)
T PRK11788 220 LGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEG 297 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCC
Confidence 99999999999999999999997532222567888999999999999999999999985 5666777899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCcHH
Q 015416 245 LDEAKSFFDIMVKKLKMDDASYKFMMKALSD---GGKLDEILEIVGGILDDGGIEFSEE 300 (407)
Q Consensus 245 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~ 300 (407)
+++|..+++++.+. .|+...+..++..+.. .|+.++++.+++++.+. ++.|++.
T Consensus 298 ~~~A~~~l~~~l~~-~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 298 PEAAQALLREQLRR-HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHHHh-CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH-HHhCCCC
Confidence 99999999999885 5677788877777664 56899999999999875 2445444
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=4.7e-19 Score=169.44 Aligned_cols=276 Identities=16% Similarity=0.095 Sum_probs=144.3
Q ss_pred CCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC------
Q 015416 6 FVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSS------ 79 (407)
Q Consensus 6 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------ 79 (407)
+.|+...|..+..+|.+.|++++|++.++...+. .|.+...|..+..+|...|++++|+..|..+...++.
T Consensus 156 ~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l---~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~ 232 (615)
T TIGR00990 156 CKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL---DPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSA 232 (615)
T ss_pred cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHH
Confidence 5678888888999999999999999999998885 3446678888888888889988887655433211100
Q ss_pred ---------------------CCCchhhHHHHHH------------------------------HH------HhcCCHHH
Q 015416 80 ---------------------VKMSAVANNSVLD------------------------------AL------CNNGKFDE 102 (407)
Q Consensus 80 ---------------------~~~~~~~~~~l~~------------------------------~~------~~~~~~~~ 102 (407)
.+++...+..+.. .+ ...+++++
T Consensus 233 ~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~ 312 (615)
T TIGR00990 233 QAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEE 312 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHH
Confidence 0000000000000 00 01134555
Q ss_pred HHHHHHHHHhcCC-CCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 015416 103 ALKLFDRMKNEHN-PPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEEL 181 (407)
Q Consensus 103 A~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 181 (407)
|.+.|+.+.+.+. .|. ....+..+..++...|++++|+..|++.+... +.....|..+...+...|++++|+..
T Consensus 313 A~~~~~~al~~~~~~~~----~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 313 AARAFEKALDLGKLGEK----EAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred HHHHHHHHHhcCCCChh----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 5555555554431 111 23344455555555555555555555554432 22233444555555555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 015416 182 YGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKM 261 (407)
Q Consensus 182 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 261 (407)
|+++++.. +.+...|..+...+...|++++|...|++.++.. +.+...+..++.++.+.|++++|+..|++.....|.
T Consensus 388 ~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~ 465 (615)
T TIGR00990 388 FDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE 465 (615)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 55554431 1224444455555555555555555555555432 223334444555555555555555555555544444
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 262 DDASYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 262 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
++..+..++.++...|++++|++.|++++.
T Consensus 466 ~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 466 APDVYNYYGELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 444555555555555555555555554444
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=9.1e-21 Score=166.55 Aligned_cols=289 Identities=17% Similarity=0.162 Sum_probs=221.2
Q ss_pred cCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHH
Q 015416 23 DGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDE 102 (407)
Q Consensus 23 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 102 (407)
.|++.+|...|.+.++. .+-=...|+.|+..+...|+...|++.|+++++.+|.+ ..+|..|...|...+.++.
T Consensus 197 ~Grl~ea~~cYlkAi~~---qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f---~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAIET---QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNF---LDAYINLGNVYKEARIFDR 270 (966)
T ss_pred hcccchhHHHHHHHHhh---CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcc---hHHHhhHHHHHHHHhcchH
Confidence 45555555555555443 12234567777777778888888888888888877543 4577788888888888888
Q ss_pred HHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 015416 103 ALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELY 182 (407)
Q Consensus 103 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 182 (407)
|+..|.+.....+. ...++..+...|..+|+++-|+..|++.++.. |.=...|+.|..++-..|+..+|+..|
T Consensus 271 Avs~Y~rAl~lrpn------~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 271 AVSCYLRALNLRPN------HAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred HHHHHHHHHhcCCc------chhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHH
Confidence 88888887766544 55677777788888888888888888888764 223568888888888888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 015416 183 GEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNL-AVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKM 261 (407)
Q Consensus 183 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 261 (407)
.+.+... +......+.|...|...|.++.|..+|....+ +.|.. ..++.|...|-++|++++|+..+++.+...|.
T Consensus 344 nkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~ 420 (966)
T KOG4626|consen 344 NKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT 420 (966)
T ss_pred HHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch
Confidence 8888742 22366788888888888888888888888887 44554 47888888889999999999999888886555
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 262 DDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 262 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
-..+|..++..|...|+++.|++.+.+++..+ |.-.+.+..|+..|...|+..+|+.-++...+.+
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQIN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 67788889999999999999999998888753 4455688888888989999999998888877443
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.88 E-value=8.8e-19 Score=178.22 Aligned_cols=306 Identities=12% Similarity=0.054 Sum_probs=179.2
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchH------------HHHHHHHHHcCCHHHHHHHHHHHHhC
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVY------------GSLMKGYFMKGMEEEAMECYNEAVGE 76 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~ 76 (407)
+...+..|...|.+.|++++|+..|++..+..+... ....| ......+.+.|++++|+..|++++..
T Consensus 302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~-~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~ 380 (1157)
T PRK11447 302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSS-NRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV 380 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc-chhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 556666777777777777777777777766422111 11111 12244556677777777777777766
Q ss_pred CCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHH----------------------------
Q 015416 77 NSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFN---------------------------- 128 (407)
Q Consensus 77 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 128 (407)
. +.+...+..+..++...|++++|++.|+++.+..+.. ..++.
T Consensus 381 ~---P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~------~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~ 451 (1157)
T PRK11447 381 D---NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN------TNAVRGLANLYRQQSPEKALAFIASLSASQRRS 451 (1157)
T ss_pred C---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHH
Confidence 5 3355666677777777888888888888777665431 11222
Q ss_pred --------------HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 015416 129 --------------VMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDE 194 (407)
Q Consensus 129 --------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 194 (407)
.+...+...|++++|++.|++.++.. |.+...+..+...|.+.|++++|...++++.+.. +.+.
T Consensus 452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~ 529 (1157)
T PRK11447 452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDP 529 (1157)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCH
Confidence 22334445667777777777766654 3345556666667777777777777777766532 1123
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC---------------------------------------CCCCCHHHHHHH
Q 015416 195 YTYGLLMDACFEVNRVDDGATYFRKMVDS---------------------------------------GLRPNLAVYNRL 235 (407)
Q Consensus 195 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------------------------------~~~~~~~~~~~l 235 (407)
..+..+...+...++.++|...++.+... ..+.+...+..+
T Consensus 530 ~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~L 609 (1157)
T PRK11447 530 EQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTL 609 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHH
Confidence 22322222333334444433333322100 012334455556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcH
Q 015416 236 VGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGRE 315 (407)
Q Consensus 236 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 315 (407)
...+...|++++|+..|+++....|.+...+..++.+|...|++++|++.++.+.... +.+...+..++.++...|++
T Consensus 610 a~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~--p~~~~~~~~la~~~~~~g~~ 687 (1157)
T PRK11447 610 ADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA--NDSLNTQRRVALAWAALGDT 687 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHhCCCH
Confidence 6666677777777777777776666666677777777777777777777777666542 33444555566666677777
Q ss_pred HHHHHHHHHHHHh
Q 015416 316 EEVVKLMEKKERE 328 (407)
Q Consensus 316 ~~A~~~~~~~~~~ 328 (407)
++|.++++++...
T Consensus 688 ~eA~~~~~~al~~ 700 (1157)
T PRK11447 688 AAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHHhhh
Confidence 7777777766543
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.87 E-value=1.4e-18 Score=176.73 Aligned_cols=298 Identities=11% Similarity=0.052 Sum_probs=222.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhH--------
Q 015416 16 LMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVAN-------- 87 (407)
Q Consensus 16 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------- 87 (407)
....+...|++++|+..|++..+. .|.+..++..++.++.+.|++++|+..|+++++.+|... ....|
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~---~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~-~~~~~~~ll~~~~ 350 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRA---NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSS-NRDKWESLLKVNR 350 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc-chhHHHHHHHhhh
Confidence 356677899999999999999985 445788999999999999999999999999998775322 21112
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 015416 88 ----NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFN 163 (407)
Q Consensus 88 ----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 163 (407)
......+.+.|++++|+..|+++++..+. +...+..+..++...|++++|++.|+++++.. +.+...+.
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~------~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~ 423 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQVDNT------DSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVR 423 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 22355678999999999999999988654 56678889999999999999999999998764 33333333
Q ss_pred HH------------------------------------------HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015416 164 NL------------------------------------------IDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLM 201 (407)
Q Consensus 164 ~l------------------------------------------~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 201 (407)
.+ ...+...|++++|+..|+++++.. +-+...+..+.
T Consensus 424 ~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA 502 (1157)
T PRK11447 424 GLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLA 502 (1157)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 22 334456788888888888888743 22466777888
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------------------------
Q 015416 202 DACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK------------------------ 257 (407)
Q Consensus 202 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------ 257 (407)
..|...|++++|...++++.+.. +.+...+..+...+...+++++|...++.+..
T Consensus 503 ~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~ 581 (1157)
T PRK11447 503 QDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETAN 581 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHH
Confidence 88999999999999999888642 22444444444444445555555444433210
Q ss_pred ----------------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHH
Q 015416 258 ----------------KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKL 321 (407)
Q Consensus 258 ----------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 321 (407)
..|.++..+..+...+.+.|++++|+..|++++... |.+...+..++.+|...|++++|.+.
T Consensus 582 ~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 582 RLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--PGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred HHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 245566677788888888899999999999888863 56677888888888889999999988
Q ss_pred HHHHHHh
Q 015416 322 MEKKERE 328 (407)
Q Consensus 322 ~~~~~~~ 328 (407)
++++...
T Consensus 660 l~~ll~~ 666 (1157)
T PRK11447 660 LAKLPAT 666 (1157)
T ss_pred HHHHhcc
Confidence 8877643
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=5.1e-18 Score=165.36 Aligned_cols=340 Identities=9% Similarity=0.017 Sum_probs=217.9
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhH
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVAN 87 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (407)
.+...+..+...+.+.|++++|..+|++..+. .|.+...+..++.++...|++++|+..++++++.. |.+.. +
T Consensus 47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~---P~~~~-~ 119 (765)
T PRK10049 47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSL---EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA---PDKAN-L 119 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHH-H
Confidence 34456888888999999999999999998885 45567778888889999999999999999998876 44566 8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhh---------------
Q 015416 88 NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGE--------------- 152 (407)
Q Consensus 88 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------- 152 (407)
..+..++...|+.++|+..++++.+..+. +...+..+..++...|..+.|+..++....
T Consensus 120 ~~la~~l~~~g~~~~Al~~l~~al~~~P~------~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~ 193 (765)
T PRK10049 120 LALAYVYKRAGRHWDELRAMTQALPRAPQ------TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAE 193 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 88888899999999999999999987665 445556667777776776666555543222
Q ss_pred -------------------------------C-CCCCCHH-HH----HHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCH
Q 015416 153 -------------------------------Y-RCSPDTL-SF----NNLIDQLCKNGMLAEAEELYGEMSDKGVN-PDE 194 (407)
Q Consensus 153 -------------------------------~-~~~~~~~-~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~~ 194 (407)
. ...|+.. .+ ...+.++...|++++|+..|+++.+.+.+ |+.
T Consensus 194 ~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~ 273 (765)
T PRK10049 194 LVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW 273 (765)
T ss_pred HHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH
Confidence 1 0011110 00 01122334556777777777776665321 221
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----------
Q 015416 195 YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRP---NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKM---------- 261 (407)
Q Consensus 195 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------- 261 (407)
....+..+|...|++++|+.+|+++.+..... .......|..++...|++++|..+++.+....|+
T Consensus 274 -a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~ 352 (765)
T PRK10049 274 -AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTS 352 (765)
T ss_pred -HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCC
Confidence 22224556677777777777777766432110 1234555555666777777777777776664331
Q ss_pred --C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHHHHHHH
Q 015416 262 --D---DASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAEAKARE 336 (407)
Q Consensus 262 --~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 336 (407)
+ ...+..++..+...|++++|+++++++.... |.+...+..++..+...|++++|++.+++.....
T Consensus 353 ~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~--P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~------- 423 (765)
T PRK10049 353 IPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA--PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE------- 423 (765)
T ss_pred CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-------
Confidence 1 1234556666667777777777777776652 5555666667777777777777777777665544
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcCCCccccccccccChhhHhhHHHHhcCcc
Q 015416 337 AEAAEAAKRSARAAIASLIPSKFGDKVGGTEMADNANANEAASVAEAQAGKE 388 (407)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~~~~ 388 (407)
|........++..+...+ ++.+|.++.+.+..+.
T Consensus 424 ---------Pd~~~l~~~~a~~al~~~---------~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 424 ---------PRNINLEVEQAWTALDLQ---------EWRQMDVLTDDVVARE 457 (765)
T ss_pred ---------CCChHHHHHHHHHHHHhC---------CHHHHHHHHHHHHHhC
Confidence 444444444444444555 6667776666665543
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=2.3e-16 Score=153.81 Aligned_cols=318 Identities=12% Similarity=0.006 Sum_probs=240.4
Q ss_pred CcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhh
Q 015416 7 VADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVA 86 (407)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (407)
+.+...+..++..+...|++++|+..++++.+. .|.+.. +..+..++...|++++|+..++++++.. |.+...
T Consensus 80 P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~---~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~---P~~~~~ 152 (765)
T PRK10049 80 PQNDDYQRGLILTLADAGQYDEALVKAKQLVSG---APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA---PQTQQY 152 (765)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHH
Confidence 345666788889999999999999999999985 445666 9899999999999999999999999987 445666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH----------------------------------------------HHHhcC-CCCCc
Q 015416 87 NNSVLDALCNNGKFDEALKLFD----------------------------------------------RMKNEH-NPPKR 119 (407)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~----------------------------------------------~~~~~~-~~~~~ 119 (407)
+..+..++...+..+.|+..++ .+.+.. ..|+.
T Consensus 153 ~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~ 232 (765)
T PRK10049 153 PTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDA 232 (765)
T ss_pred HHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCcc
Confidence 6667777766666665554444 333221 11110
Q ss_pred cccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHH
Q 015416 120 LAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCS-PDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNP---DEY 195 (407)
Q Consensus 120 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~ 195 (407)
...........+..+...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|+..|+++.+..... ...
T Consensus 233 ~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~ 311 (765)
T PRK10049 233 TADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDE 311 (765)
T ss_pred chHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChH
Confidence 0000001111133456779999999999999987522 222 22335788999999999999999987643111 134
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 015416 196 TYGLLMDACFEVNRVDDGATYFRKMVDSGL-----------RPN---LAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKM 261 (407)
Q Consensus 196 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 261 (407)
....+..++...|++++|..+++.+..... .|+ ...+..++..+...|++++|+.+++++....|.
T Consensus 312 ~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~ 391 (765)
T PRK10049 312 ELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG 391 (765)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 566677788999999999999999987421 123 235667888999999999999999999998888
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHHHHH
Q 015416 262 DDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAEAKA 334 (407)
Q Consensus 262 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 334 (407)
+...+..++..+...|++++|++.+++++... |.+...+...+..+.+.|++++|..+++++.+..+....
T Consensus 392 n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 392 NQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999999999999999974 555677888888999999999999999999877655443
No 21
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.80 E-value=8e-16 Score=138.75 Aligned_cols=282 Identities=11% Similarity=0.095 Sum_probs=222.5
Q ss_pred cCChhhHHHHHHHHHHhhCCccCCcchHHHH-HHHHHHcCCHHHHHHHHHHHHhCCCCCCCchh--hHHHHHHHHHhcCC
Q 015416 23 DGDSDGVFRLFEELKEKLGGVVSDGVVYGSL-MKGYFMKGMEEEAMECYNEAVGENSSVKMSAV--ANNSVLDALCNNGK 99 (407)
Q Consensus 23 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~ 99 (407)
.|+++.|.+.+....+. .+++..+..+ ..+..+.|+++.|..+|.++.+.. |+.. ........+...|+
T Consensus 97 eGd~~~A~k~l~~~~~~----~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~----~~~~~~~~l~~a~l~l~~g~ 168 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH----AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELA----DNDQLPVEITRVRIQLARNE 168 (398)
T ss_pred CCCHHHHHHHHHHHHhc----ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CcchHHHHHHHHHHHHHCCC
Confidence 59999999888776553 2233444444 455589999999999999998754 3332 22234678899999
Q ss_pred HHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH-------HHHHHHHHHHHc
Q 015416 100 FDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTL-------SFNNLIDQLCKN 172 (407)
Q Consensus 100 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~ 172 (407)
++.|...++++.+..|. ++.+...+...|.+.|++++|.+++..+.+.+..++.. +|..++......
T Consensus 169 ~~~Al~~l~~~~~~~P~------~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 169 NHAARHGVDKLLEVAPR------HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred HHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999988765 67789999999999999999999999999876443221 233333334444
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015416 173 GMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFF 252 (407)
Q Consensus 173 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 252 (407)
.+.+...++++.+-+. .+.++.....+...+...|+.++|.+++++..+. +|+.... ++.+....++.+++.+.+
T Consensus 243 ~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~ 317 (398)
T PRK10747 243 QGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVL 317 (398)
T ss_pred cCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHH
Confidence 5566666777766443 3457888899999999999999999999999883 5555332 233334569999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015416 253 DIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 326 (407)
+...+..|.|+..+..+++.|.+.|++++|.+.|+.+.+. .|+...+..++.++.+.|+.++|...+++-.
T Consensus 318 e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~---~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 318 RQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ---RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999988999999999999999999999999999999985 7999999999999999999999999998754
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.79 E-value=1.5e-15 Score=148.87 Aligned_cols=306 Identities=10% Similarity=-0.004 Sum_probs=234.9
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCC---HHHHHHH----------------
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGM---EEEAMEC---------------- 69 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~---------------- 69 (407)
+....-.+--...+.|+.++|.++|++.....+....+......++..|.+.+. ..++..+
T Consensus 375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 454 (987)
T PRK09782 375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQL 454 (987)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhh
Confidence 334444445556788999999999999887322233344455577777777665 3333222
Q ss_pred ------HHHHHhCCCCCCC--chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHH
Q 015416 70 ------YNEAVGENSSVKM--SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFK 141 (407)
Q Consensus 70 ------~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 141 (407)
++.....-+..++ +...|..+..++.. +++++|+..+.+.....+. ......+...+...|+++
T Consensus 455 ~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd-------~~~~L~lA~al~~~Gr~e 526 (987)
T PRK09782 455 PGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPD-------AWQHRAVAYQAYQVEDYA 526 (987)
T ss_pred hhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCc-------hHHHHHHHHHHHHCCCHH
Confidence 2222222122245 67788888888877 8999999989888876532 223444455567899999
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 015416 142 DAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMV 221 (407)
Q Consensus 142 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 221 (407)
+|...|+++... +|+...+..++.++.+.|++++|..++++.++.. ++....+..+...+...|++++|...+++.+
T Consensus 527 eAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL 603 (987)
T PRK09782 527 TALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSL 603 (987)
T ss_pred HHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999998664 4566667788889999999999999999998854 2233344444455556799999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHH
Q 015416 222 DSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEEL 301 (407)
Q Consensus 222 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 301 (407)
+. .|+...+..++.++.+.|++++|...|++.....|.+...+..+..++...|++++|+.+|+++++.. |-+...
T Consensus 604 ~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~--P~~~~a 679 (987)
T PRK09782 604 NI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL--PDDPAL 679 (987)
T ss_pred Hh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHH
Confidence 84 57788999999999999999999999999999888899999999999999999999999999999974 667788
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 302 QEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 302 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
+..++.++...|++++|+..+++..+..
T Consensus 680 ~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 680 IRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999997544
No 23
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=5.5e-17 Score=144.45 Aligned_cols=289 Identities=12% Similarity=0.088 Sum_probs=240.0
Q ss_pred ChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 015416 25 DSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEAL 104 (407)
Q Consensus 25 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 104 (407)
+..+|+.+|..+... +..+..+...++.+|...+++++|..+|+.+....|-.-.+..+|.+.+-.+-+ +-++
T Consensus 334 ~~~~A~~~~~klp~h---~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~L 406 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH---HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVAL 406 (638)
T ss_pred HHHHHHHHHHhhHHh---cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHH
Confidence 568899999996664 444556777899999999999999999999998876656678888888754422 2233
Q ss_pred HHHH-HHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 015416 105 KLFD-RMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183 (407)
Q Consensus 105 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 183 (407)
..+. .+....+. .+.+|.+++.+|.-+++++.|++.|++.++.+ +....+|+.++.-+.....+|.|...|+
T Consensus 407 s~Laq~Li~~~~~------sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr 479 (638)
T KOG1126|consen 407 SYLAQDLIDTDPN------SPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFR 479 (638)
T ss_pred HHHHHHHHhhCCC------CcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHH
Confidence 3333 34443332 66799999999999999999999999999976 3478899999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q 015416 184 EMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDD 263 (407)
Q Consensus 184 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 263 (407)
.++.... -+-..|.-++..|.+.++++.|+-.|+++.+-+ +.+.+....++..+.+.|+.++|+.+++++....+.++
T Consensus 480 ~Al~~~~-rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~ 557 (638)
T KOG1126|consen 480 KALGVDP-RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP 557 (638)
T ss_pred hhhcCCc-hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc
Confidence 9987421 135567778899999999999999999999854 44667888899999999999999999999999888899
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHH
Q 015416 264 ASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAE 331 (407)
Q Consensus 264 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 331 (407)
-.-...+..+...+++++|+..++++.+. +|.+..+|..++..|.+.|+.+.|+.-|--+.+..++
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 99999999999999999999999999986 5677779999999999999999999988888765544
No 24
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.78 E-value=1.9e-18 Score=149.06 Aligned_cols=262 Identities=18% Similarity=0.207 Sum_probs=97.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHH
Q 015416 52 SLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMA 131 (407)
Q Consensus 52 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 131 (407)
.+...+.+.|++++|++++........ .+.+...|..+...+...++++.|...++++...+.. +...+..++
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~-~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~------~~~~~~~l~ 85 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIA-PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA------NPQDYERLI 85 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc------ccccccccc
Confidence 456777777778888777755433320 0234455555666666777778888888777765433 344566666
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCh
Q 015416 132 DGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKG-VNPDEYTYGLLMDACFEVNRV 210 (407)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~ 210 (407)
.. ...+++++|.+++....+.. ++...+..++..+...++++++..+++.+.... .+++...|..+...+.+.|+.
T Consensus 86 ~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 86 QL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp -----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH
T ss_pred cc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 66 57777788877776665432 555666677777777788888888877766432 344566777777777888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015416 211 DDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGIL 290 (407)
Q Consensus 211 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 290 (407)
++|++.++++++.. +.|......++..+...|+.+++..++.......+.++..+..++.+|...|+.++|+.+|++..
T Consensus 163 ~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 163 DKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccc
Confidence 88888888887742 22466777777778888888887777777777556666777778888888888888888888877
Q ss_pred hcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015416 291 DDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 291 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 326 (407)
..+ +.++.....++.++...|+.++|..+.+++.
T Consensus 242 ~~~--p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 242 KLN--PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHS--TT-HHHHHHHHHHHT----------------
T ss_pred ccc--ccccccccccccccccccccccccccccccc
Confidence 753 5677777778888888888888887777654
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.78 E-value=1.8e-15 Score=148.22 Aligned_cols=280 Identities=12% Similarity=0.041 Sum_probs=222.6
Q ss_pred HHHHHHHHHhhCCccC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 015416 30 FRLFEELKEKLGGVVS--DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLF 107 (407)
Q Consensus 30 ~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 107 (407)
...++......+..++ +...|..++.++.. +++++|+..|.+..... |+......+...+...|++++|...|
T Consensus 458 ~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~----Pd~~~~L~lA~al~~~Gr~eeAi~~~ 532 (987)
T PRK09782 458 ADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ----PDAWQHRAVAYQAYQVEDYATALAAW 532 (987)
T ss_pred hhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC----CchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3334444443333455 77888999988887 89999999999988765 34444445566667899999999999
Q ss_pred HHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015416 108 DRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSD 187 (407)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 187 (407)
+++....+ ....+..++.++.+.|++++|...|++.++.. +++...+..+.......|++++|...|++.++
T Consensus 533 rka~~~~p-------~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~ 604 (987)
T PRK09782 533 QKISLHDM-------SNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN 604 (987)
T ss_pred HHHhccCC-------CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99865422 22346677888999999999999999998875 34444444445555567999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 015416 188 KGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYK 267 (407)
Q Consensus 188 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 267 (407)
. .|+...+..+..++.+.|++++|+..|++..... +.+...++.+..++...|++++|+..|++..+..|.++..+.
T Consensus 605 l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~ 681 (987)
T PRK09782 605 I--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIR 681 (987)
T ss_pred h--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 4 5678899999999999999999999999999864 446678899999999999999999999999998888999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 015416 268 FMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKER 327 (407)
Q Consensus 268 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 327 (407)
.+..++...|++++|+..|+++++.. +-...+.........+..+++.|.+-+++...
T Consensus 682 nLA~al~~lGd~~eA~~~l~~Al~l~--P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 682 QLAYVNQRLDDMAATQHYARLVIDDI--DNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999863 44445666667777777777777777666543
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=6.7e-15 Score=141.43 Aligned_cols=330 Identities=13% Similarity=0.069 Sum_probs=189.9
Q ss_pred HHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCC
Q 015416 20 FVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGK 99 (407)
Q Consensus 20 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 99 (407)
..+.|+++.|++.|+++.+..| -+......++..+...|+.++|+.+++++.... +........++..|...|+
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P---~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~---n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGP---LQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM---NISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCc---cchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC---CCCHHHHHHHHHHHHHcCC
Confidence 3466666677777766666411 121111255566666666666666666665211 2223333333455666666
Q ss_pred HHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 015416 100 FDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAE 179 (407)
Q Consensus 100 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 179 (407)
+++|+++|+++.+..+. ++..+..++..|...++.++|++.++++.... |+...+..++..+...++..+|+
T Consensus 118 yd~Aiely~kaL~~dP~------n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL 189 (822)
T PRK14574 118 WDQALALWQSSLKKDPT------NPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDAL 189 (822)
T ss_pred HHHHHHHHHHHHhhCCC------CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHH
Confidence 66666666666665544 34445555566666666666666666665542 34333333333332333443455
Q ss_pred HHHHHHHhCCC---------------------------------------------------------------------
Q 015416 180 ELYGEMSDKGV--------------------------------------------------------------------- 190 (407)
Q Consensus 180 ~~~~~~~~~~~--------------------------------------------------------------------- 190 (407)
..++++.+...
T Consensus 190 ~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ 269 (822)
T PRK14574 190 QASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADK 269 (822)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 55555444210
Q ss_pred --------------CCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015416 191 --------------NPDE-----YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSF 251 (407)
Q Consensus 191 --------------~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 251 (407)
.|.. ....-.+-++...|++.++++.|+.+...+.+....+-..++.+|...+++++|..+
T Consensus 270 ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l 349 (822)
T PRK14574 270 ALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPI 349 (822)
T ss_pred HHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 0110 011122334455677777777777777666544455777788888888888888888
Q ss_pred HHHHHhcC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----------CCCcH---HHHHHHHHHHhhc
Q 015416 252 FDIMVKKL------KMDDASYKFMMKALSDGGKLDEILEIVGGILDDGG----------IEFSE---ELQEFVKGELSKE 312 (407)
Q Consensus 252 ~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----------~~~~~---~~~~~l~~~~~~~ 312 (407)
|..+.... +++......|.-+|...+++++|..+++++.+... ..|++ ..+..++..+...
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~ 429 (822)
T PRK14574 350 LSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVAL 429 (822)
T ss_pred HHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHc
Confidence 88886622 22344457788888888888888888888877321 01222 2444567778888
Q ss_pred CcHHHHHHHHHHHHHh------------------hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCc
Q 015416 313 GREEEVVKLMEKKERE------------------KAEAKAREAEAAEAAKRSARAAIASLIPSKFGDKV 363 (407)
Q Consensus 313 g~~~~A~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 363 (407)
|+..+|++.++++... +....++.........+|....+.+..+..+...+
T Consensus 430 gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~ 498 (822)
T PRK14574 430 NDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQ 498 (822)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhh
Confidence 8888888888888632 22334444445555556666666666666655555
No 27
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.78 E-value=3e-15 Score=135.78 Aligned_cols=288 Identities=10% Similarity=0.049 Sum_probs=218.0
Q ss_pred HhcCChhhHHHHHHHHHHhhCCccCCcc-hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCC
Q 015416 21 VRDGDSDGVFRLFEELKEKLGGVVSDGV-VYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGK 99 (407)
Q Consensus 21 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 99 (407)
...|+++.|.+.+....+. .|++. .+-....+..+.|+++.|.++|.++.+..| .+...........+...|+
T Consensus 95 ~~~g~~~~A~~~l~~~~~~----~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p--~~~l~~~~~~a~l~l~~~~ 168 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH----AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAG--NDNILVEIARTRILLAQNE 168 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--cCchHHHHHHHHHHHHCCC
Confidence 3579999999999887764 34443 344557788889999999999999987542 1122344445788899999
Q ss_pred HHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH-HHHHHH---HHcCCH
Q 015416 100 FDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFN-NLIDQL---CKNGML 175 (407)
Q Consensus 100 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~g~~ 175 (407)
++.|...++.+.+..|. +..++..+...|...|+++.|.+.+..+.+.+.. +...+. ....++ ...+..
T Consensus 169 ~~~Al~~l~~l~~~~P~------~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~ 241 (409)
T TIGR00540 169 LHAARHGVDKLLEMAPR------HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMA 241 (409)
T ss_pred HHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998765 6678999999999999999999999999998743 333332 111222 333333
Q ss_pred HHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHH
Q 015416 176 AEAEELYGEMSDKGV---NPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAV---YNRLVGKLVQVGMLDEAK 249 (407)
Q Consensus 176 ~~a~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~ 249 (407)
+++...+..+.+... +.+...+..++..+...|+.++|.+++++..+.. |+... ...........++.+.+.
T Consensus 242 ~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~ 319 (409)
T TIGR00540 242 DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLE 319 (409)
T ss_pred hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHH
Confidence 444445555554321 2378889999999999999999999999999853 33331 122222234457889999
Q ss_pred HHHHHHHhcCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHH--HHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 015416 250 SFFDIMVKKLKMDD--ASYKFMMKALSDGGKLDEILEIVGG--ILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKK 325 (407)
Q Consensus 250 ~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 325 (407)
+.++...+..|.++ ....+++..|.+.|++++|.+.|+. ..+ ..|+...+..++..+.+.|+.++|.+++++.
T Consensus 320 ~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~---~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 320 KLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK---EQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998777788 7888999999999999999999995 544 3788888889999999999999999999875
Q ss_pred H
Q 015416 326 E 326 (407)
Q Consensus 326 ~ 326 (407)
.
T Consensus 397 l 397 (409)
T TIGR00540 397 L 397 (409)
T ss_pred H
Confidence 3
No 28
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.77 E-value=3.3e-18 Score=147.57 Aligned_cols=267 Identities=17% Similarity=0.221 Sum_probs=117.1
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCC-ccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhh
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGG-VVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVA 86 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (407)
|+...+ .+...+.+.|++++|+++++..... . .+.++..|..+...+...++++.|+..++++...++ -+...
T Consensus 7 ~~~~~l-~~A~~~~~~~~~~~Al~~L~~~~~~--~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~---~~~~~ 80 (280)
T PF13429_consen 7 PSEEAL-RLARLLYQRGDYEKALEVLKKAAQK--IAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK---ANPQD 80 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccc-ccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccc---ccccc
Confidence 333334 5688889999999999999765553 2 244667777888888899999999999999998763 35666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCCHHHHHHH
Q 015416 87 NNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYR-CSPDTLSFNNL 165 (407)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l 165 (407)
+..++.. ...+++++|.+++....+... +...+..++..+.+.++++++..+++.+.... .+++...|..+
T Consensus 81 ~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-------~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 152 (280)
T PF13429_consen 81 YERLIQL-LQDGDPEEALKLAEKAYERDG-------DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLAL 152 (280)
T ss_dssp ---------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHH
T ss_pred ccccccc-ccccccccccccccccccccc-------ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHH
Confidence 7777777 789999999999988765542 44467778889999999999999999977533 34677889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 015416 166 IDQLCKNGMLAEAEELYGEMSDKGVNP-DEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244 (407)
Q Consensus 166 ~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 244 (407)
+..+.+.|++++|+..|++.++. .| +......++..+...|+.+++.++++...+.. +.+...+..++.+|...|+
T Consensus 153 a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~ 229 (280)
T PF13429_consen 153 AEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGR 229 (280)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccc
Confidence 99999999999999999999985 45 47788889999999999999999999888653 4566688899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 245 LDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 245 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
.++|..+|++.....|.|+.....++.++...|+.++|.++.+++..
T Consensus 230 ~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 230 YEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999998888999999999999999999999999988765
No 29
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=8.2e-15 Score=125.25 Aligned_cols=297 Identities=12% Similarity=0.075 Sum_probs=232.2
Q ss_pred HHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHh
Q 015416 17 MLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCN 96 (407)
Q Consensus 17 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (407)
..++....+.+++..-.+..... |.+.+...-+..+.+.....+++.|+.+|+++.+.+|---.|..+|..++ |.+
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~--gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~ 309 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSV--GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHH
Confidence 34555666777888878777776 77777777777777778889999999999999988765445677887777 444
Q ss_pred cCCHHHHHHHHHHHH-hcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 015416 97 NGKFDEALKLFDRMK-NEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGML 175 (407)
Q Consensus 97 ~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 175 (407)
..+-. +..+.+-. ..+ .+ -+.|+..+++-|.-.++.++|..+|++.++.+ |.....|+.++.-|....+.
T Consensus 310 ~~~sk--Ls~LA~~v~~id----Ky--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt 380 (559)
T KOG1155|consen 310 NDKSK--LSYLAQNVSNID----KY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNT 380 (559)
T ss_pred hhhHH--HHHHHHHHHHhc----cC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhccc
Confidence 43322 22222111 110 01 34478888999999999999999999999986 45667899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 176 AEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIM 255 (407)
Q Consensus 176 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 255 (407)
..|++-|+.+++.. +-|-..|..++++|.-.+...-|+-+|++..+.. +-|...|.+|+.+|.+.++.++|++.|.+.
T Consensus 381 ~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykra 458 (559)
T KOG1155|consen 381 HAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRA 458 (559)
T ss_pred HHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 99999999999863 4578899999999999999999999999999853 447789999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---C-CCC-cHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh
Q 015416 256 VKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDG---G-IEF-SEELQEFVKGELSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 256 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 328 (407)
......+...+..++..|-+.++.++|...|.+.++.. | +.+ .......|+.-+.+.+++++|.........-
T Consensus 459 i~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 459 ILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 98656677899999999999999999999998877631 2 233 3445666888888999999999877776644
No 30
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=2.7e-14 Score=122.18 Aligned_cols=304 Identities=12% Similarity=0.060 Sum_probs=210.3
Q ss_pred CcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHH-----------------------------HHHH
Q 015416 7 VADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSL-----------------------------MKGY 57 (407)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l-----------------------------~~~~ 57 (407)
.-|...+-.....+.+.|....|++.|...... .|-.-..|..| ..++
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~---~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR---YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc---CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 345555555555566677777888777776663 22222222222 2223
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhc
Q 015416 58 FMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQ 137 (407)
Q Consensus 58 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 137 (407)
-...+.+++++-.+.....| ++.+...-+....+.....+++.|+.+|+++.+..|-- +. +..+|..++-+--.+
T Consensus 238 ~el~q~~e~~~k~e~l~~~g--f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYR--l~-dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVG--FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYR--LD-DMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHhcc--CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc--ch-hHHHHhHHHHHHhhh
Confidence 33334445555555555544 33344444444445556666777777777666653321 11 444554443322221
Q ss_pred CCHHHHHHHHHH-HhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 015416 138 GRFKDAIEVFRK-MGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATY 216 (407)
Q Consensus 138 g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 216 (407)
..+ .++-+ ....+ +--+.|...+++-|.-.++.++|..+|++.++.+ +-....|+.++.-|....+...|.+.
T Consensus 313 skL----s~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 313 SKL----SYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HHH----HHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 111 11111 11111 1234455667777788889999999999999864 23467899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 015416 217 FRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIE 296 (407)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 296 (407)
|+++++-. +-|...|..|+++|.-.+...=|+-+|++...-.|.|...|..|+.+|.+.++.++|++.|.++...+ .
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~--d 463 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG--D 463 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc--c
Confidence 99999864 55888999999999999999999999999999888899999999999999999999999999999864 4
Q ss_pred CcHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 015416 297 FSEELQEFVKGELSKEGREEEVVKLMEKKER 327 (407)
Q Consensus 297 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 327 (407)
.+...+..++.+|.+.++.++|...+++..+
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5778899999999999999999999998765
No 31
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.73 E-value=9.1e-14 Score=133.74 Aligned_cols=295 Identities=9% Similarity=0.024 Sum_probs=164.2
Q ss_pred HHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHh
Q 015416 17 MLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCN 96 (407)
Q Consensus 17 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (407)
...|...|++++|+++|+++.+. .|.++..+..++..+...++.++|++.++++...+ |+...+..++..+..
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~---dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d----p~~~~~l~layL~~~ 181 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKK---DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD----PTVQNYMTLSYLNRA 181 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC----cchHHHHHHHHHHHh
Confidence 55777889999999999999986 44467788888888999999999999999998765 334445455555555
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHH-------------------------------
Q 015416 97 NGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIE------------------------------- 145 (407)
Q Consensus 97 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~------------------------------- 145 (407)
.++..+|++.++++.+..|. +...+..+..++.+.|-...|.+
T Consensus 182 ~~~~~~AL~~~ekll~~~P~------n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~ 255 (822)
T PRK14574 182 TDRNYDALQASSEAVRLAPT------SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVL 255 (822)
T ss_pred cchHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccc
Confidence 66676699999999888654 22233333333333332222221
Q ss_pred -----------------HHHHHhhC-C-CCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015416 146 -----------------VFRKMGEY-R-CSPDTL----SFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMD 202 (407)
Q Consensus 146 -----------------~~~~~~~~-~-~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 202 (407)
-++.+... + .|+... ...-.+.++...|++.++++.|+.+...+.+....+-..+..
T Consensus 256 ~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ad 335 (822)
T PRK14574 256 PTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAAS 335 (822)
T ss_pred ccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Confidence 12221110 0 011111 112233444555556666666666555544433445555555
Q ss_pred HHHhcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------------CC---
Q 015416 203 ACFEVNRVDDGATYFRKMVDSG-----LRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLK------------MD--- 262 (407)
Q Consensus 203 ~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------~~--- 262 (407)
+|...+++++|+.+|+.+.... .+++......|.-+|...+++++|..+++.+.+..| |+
T Consensus 336 ayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~ 415 (822)
T PRK14574 336 AYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDW 415 (822)
T ss_pred HHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccH
Confidence 5666666666666665554321 112233344555555555666666655555554211 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015416 263 DASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 263 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 326 (407)
...+..++..+...|+..+|.+.++++... -|-+..+...++..+...|++.+|...++...
T Consensus 416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 416 IEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 123344445555555566666665555554 24555555555555555555555555555444
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.73 E-value=2.7e-14 Score=131.48 Aligned_cols=337 Identities=16% Similarity=0.114 Sum_probs=245.2
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhH
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVAN 87 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (407)
|.....-.........|++++|.+++.++++. .|.+...|..|+.+|-+.|+.+++...+-.+-..+ |.|...|
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq---dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~---p~d~e~W 210 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQ---DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN---PKDYELW 210 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC---CCChHHH
Confidence 33444444445555569999999999999995 56789999999999999999999999988887776 5577899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH----HHH
Q 015416 88 NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTL----SFN 163 (407)
Q Consensus 88 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~ 163 (407)
..+.....+.|.++.|.-+|.++++..|. +...+---+..|-+.|+...|...|.++.....+.|.. ...
T Consensus 211 ~~ladls~~~~~i~qA~~cy~rAI~~~p~------n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~ 284 (895)
T KOG2076|consen 211 KRLADLSEQLGNINQARYCYSRAIQANPS------NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIR 284 (895)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCc------chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHH
Confidence 99999999999999999999999998765 55566667889999999999999999999875322322 223
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC------------------
Q 015416 164 NLIDQLCKNGMLAEAEELYGEMSDK-GVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSG------------------ 224 (407)
Q Consensus 164 ~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------------------ 224 (407)
.++..+...++-+.|.+.++..... +-..+...++.++..|.+...++.+...........
T Consensus 285 ~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~ 364 (895)
T KOG2076|consen 285 RVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEP 364 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccc
Confidence 3456677778778899988887752 223456678888889998888888888777766511
Q ss_pred ---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-c--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 225 ---------LRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK-K--LKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 225 ---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
+.++..+ ..+.-++.+....+....+...... . ...+...|.-+..+|...|++.+|+.+|..+...
T Consensus 365 ~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~ 443 (895)
T KOG2076|consen 365 NALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR 443 (895)
T ss_pred cccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC
Confidence 1222333 1222233333333333333333333 2 2335677888889999999999999999988886
Q ss_pred CCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCcccccccccc
Q 015416 293 GGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAEAKAREAEAAEAAKRSARAAIASLIPSKFGDKVGGTEMADNA 372 (407)
Q Consensus 293 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 372 (407)
.+ ..+...|..++++|...|..++|...++++.... |......+.|++++..+|
T Consensus 444 ~~-~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~----------------p~~~D~Ri~Lasl~~~~g--------- 497 (895)
T KOG2076|consen 444 EG-YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA----------------PDNLDARITLASLYQQLG--------- 497 (895)
T ss_pred cc-ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC----------------CCchhhhhhHHHHHHhcC---------
Confidence 43 2335578888899999999999999988887654 566667777777777777
Q ss_pred ChhhHhhHHHH
Q 015416 373 NANEAASVAEA 383 (407)
Q Consensus 373 ~~~ea~~~~~~ 383 (407)
+.++|....+.
T Consensus 498 ~~EkalEtL~~ 508 (895)
T KOG2076|consen 498 NHEKALETLEQ 508 (895)
T ss_pred CHHHHHHHHhc
Confidence 56655555544
No 33
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.73 E-value=5.9e-14 Score=130.23 Aligned_cols=301 Identities=16% Similarity=0.169 Sum_probs=216.4
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhH
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVAN 87 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (407)
-|+...+.|...|.-.|+++.+..+...+......-..-...|..++++|-..|++++|..+|.+..+.+++. ....+
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~--~~l~~ 345 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN--FVLPL 345 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC--ccccc
Confidence 4677788899999999999999999999888521112234568889999999999999999999998876321 24556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcC----CHHHHHHHHHHHhhCCCCCCHHHHH
Q 015416 88 NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQG----RFKDAIEVFRKMGEYRCSPDTLSFN 163 (407)
Q Consensus 88 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~ 163 (407)
..++..|.+.|+++.+...|+.+.+..+. +..+...|+..|...+ ..+.|..++.+..... +.|...|-
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p~------~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l 418 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQLPN------NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWL 418 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhCcc------hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHH
Confidence 67889999999999999999999987654 5667777888887775 5567777777776654 56777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCC------CCHH
Q 015416 164 NLIDQLCKNGMLAEAEELYGEMS----DKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDS---GLR------PNLA 230 (407)
Q Consensus 164 ~l~~~~~~~g~~~~a~~~~~~~~----~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~------~~~~ 230 (407)
.+...+-..+-+.. +.+|..+. ..+..+.+...|.+...+...|.+.+|...|...... ... ++..
T Consensus 419 ~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt 497 (1018)
T KOG2002|consen 419 ELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLT 497 (1018)
T ss_pred HHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhH
Confidence 77776665544433 66665543 3445567778888888888888888888888877753 112 2233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHh
Q 015416 231 VYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELS 310 (407)
Q Consensus 231 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 310 (407)
+-..+...+-..++++.|...|..+.+..|.-...|..++......+...+|..++..++..+ ..++..+..++..+.
T Consensus 498 ~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d--~~np~arsl~G~~~l 575 (1018)
T KOG2002|consen 498 LKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID--SSNPNARSLLGNLHL 575 (1018)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc--cCCcHHHHHHHHHHH
Confidence 455567777777788888888888888666666677777655555677778888888877754 445555555665565
Q ss_pred hcCcHHHHHH
Q 015416 311 KEGREEEVVK 320 (407)
Q Consensus 311 ~~g~~~~A~~ 320 (407)
+...+.-|.+
T Consensus 576 ~k~~~~~a~k 585 (1018)
T KOG2002|consen 576 KKSEWKPAKK 585 (1018)
T ss_pred hhhhhccccc
Confidence 5555555554
No 34
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.73 E-value=7.9e-14 Score=114.09 Aligned_cols=294 Identities=13% Similarity=0.114 Sum_probs=223.9
Q ss_pred cCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCc--hhhHHHHHHHHHhcCCH
Q 015416 23 DGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMS--AVANNSVLDALCNNGKF 100 (407)
Q Consensus 23 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~ 100 (407)
..+.++|.++|-+|.+ ..+.+..+.-+|++.|-+.|..+.|+.+.+.+.... +.+.+ ..+...|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~---~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp-dlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQ---EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP-DLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHh---cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHHHHHhhhh
Confidence 4678999999999998 445567777889999999999999999999888642 22221 22345577889999999
Q ss_pred HHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH----HHHHHHHHHHHcCCHH
Q 015416 101 DEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTL----SFNNLIDQLCKNGMLA 176 (407)
Q Consensus 101 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~ 176 (407)
|.|..+|..+.+.+.- -..+...|+..|-...+|++|+++-+++.+.+-.+... .|.-+...+....+++
T Consensus 124 DRAE~~f~~L~de~ef------a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d 197 (389)
T COG2956 124 DRAEDIFNQLVDEGEF------AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVD 197 (389)
T ss_pred hHHHHHHHHHhcchhh------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHH
Confidence 9999999999875432 34478889999999999999999999998876433322 4566667777788999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015416 177 EAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMV 256 (407)
Q Consensus 177 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 256 (407)
.|..++.+..+.+ +..+..-..+...+...|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++...++..+.
T Consensus 198 ~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 198 RARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM 276 (389)
T ss_pred HHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999998753 223445556788899999999999999999987544445588889999999999999999999988
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHh---hcCcHHHHHHHHHHHHHhhHH
Q 015416 257 KKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELS---KEGREEEVVKLMEKKEREKAE 331 (407)
Q Consensus 257 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~ 331 (407)
+. .+....-..+........-.+.|...+.+-+.. .|+...+..+++... ..|+..+....+++|.....+
T Consensus 277 ~~-~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~ 350 (389)
T COG2956 277 ET-NTGADAELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLR 350 (389)
T ss_pred Hc-cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHh
Confidence 82 334444555555555555567777777766665 688887777777543 336678888888888766644
No 35
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=3.8e-15 Score=132.88 Aligned_cols=267 Identities=15% Similarity=0.099 Sum_probs=220.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHH-HHHHHhCCCCCCCchhhHHH
Q 015416 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMEC-YNEAVGENSSVKMSAVANNS 89 (407)
Q Consensus 11 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~~~ 89 (407)
.+...+..+|...+++++|..+|+.+.+..|-..-+.++|.+.+..+-+. -++.+ -+.+...+ +....+|..
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~Laq~Li~~~---~~sPesWca 426 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYLAQDLIDTD---PNSPESWCA 426 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHHHHHHHhhC---CCCcHHHHH
Confidence 34577889999999999999999999998655556788888887765332 22222 23444444 456789999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 015416 90 VLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQL 169 (407)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 169 (407)
++.+|.-+++.+.|++.|++.+..++. ...+|+.+..-+.....+|.|...|+..+... +.+-..|.-++..|
T Consensus 427 ~GNcfSLQkdh~~Aik~f~RAiQldp~------faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy 499 (638)
T KOG1126|consen 427 LGNCFSLQKDHDTAIKCFKRAIQLDPR------FAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVY 499 (638)
T ss_pred hcchhhhhhHHHHHHHHHHHhhccCCc------cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhhe
Confidence 999999999999999999999988655 67799999999999999999999999988743 23344566678889
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015416 170 CKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAK 249 (407)
Q Consensus 170 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 249 (407)
.+.++++.|+-.|+++.+.+ +-+.+....++..+.+.|+.++|+++|+++.... +.|+..-...+..+...+++++|+
T Consensus 500 ~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal 577 (638)
T KOG1126|consen 500 LKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVEAL 577 (638)
T ss_pred eccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHHHH
Confidence 99999999999999999853 2356677778888999999999999999999754 335556666778888999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 015416 250 SFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDG 293 (407)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 293 (407)
..++++.+..|.+...|..++..|.+.|+.+.|+..|.-+.+.+
T Consensus 578 ~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 578 QELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 99999999888899999999999999999999999999988763
No 36
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.70 E-value=3.4e-13 Score=113.68 Aligned_cols=285 Identities=12% Similarity=0.084 Sum_probs=233.1
Q ss_pred cCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHH
Q 015416 23 DGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDE 102 (407)
Q Consensus 23 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 102 (407)
.|+|.+|+++...-.+. + +.....|..-+.+.-+.|+.+.+-.++.++-+.. -.++........+.....|+++.
T Consensus 97 eG~~~qAEkl~~rnae~--~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~--~~~~l~v~ltrarlll~~~d~~a 171 (400)
T COG3071 97 EGDFQQAEKLLRRNAEH--G-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA--GDDTLAVELTRARLLLNRRDYPA 171 (400)
T ss_pred cCcHHHHHHHHHHhhhc--C-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC--CCchHHHHHHHHHHHHhCCCchh
Confidence 69999999999987775 3 2334455666777788999999999999998763 24566677777888999999999
Q ss_pred HHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH-------HHHHHHHHHHHcCCH
Q 015416 103 ALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTL-------SFNNLIDQLCKNGML 175 (407)
Q Consensus 103 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~ 175 (407)
|..-++++.+.++. ++.+......+|.+.|++.....++..+.+.|.-.+.. +|..++.-....+..
T Consensus 172 A~~~v~~ll~~~pr------~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 172 ARENVDQLLEMTPR------HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred HHHHHHHHHHhCcC------ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999998776 56689999999999999999999999999988766654 566666665555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 176 AEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIM 255 (407)
Q Consensus 176 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 255 (407)
+.-...|+..-.. .+.++..-..++.-+...|+.++|.++..+..+++.+|+ -...-.+.+-++.+.-++..+.-
T Consensus 246 ~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 246 EGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKW 320 (400)
T ss_pred hHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHH
Confidence 5555566655433 455677778889999999999999999999998877665 22223456778888888888888
Q ss_pred HhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015416 256 VKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 256 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 326 (407)
.+..+.++..+.+|++.|.+.+.|.+|...|+..++. .|+...|..++.++.+.|+..+|....++..
T Consensus 321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~---~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL---RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc---CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 8888888999999999999999999999999988874 8999999999999999999999999888765
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=6.4e-14 Score=119.73 Aligned_cols=293 Identities=13% Similarity=0.161 Sum_probs=227.3
Q ss_pred HHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHH--cCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHH
Q 015416 18 LGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFM--KGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALC 95 (407)
Q Consensus 18 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (407)
.-|.++|+++.|++++..+.+. ....-...-+.|-..+.- -.++..|.++-+.++..+ .-+......-.....
T Consensus 427 ~~~lk~~d~~~aieilkv~~~k--dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d---ryn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKK--DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID---RYNAAALTNKGNIAF 501 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhc--cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc---ccCHHHhhcCCceee
Confidence 3567899999999999998886 222222222333222222 457888999988888765 445666655566667
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 015416 96 NNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGML 175 (407)
Q Consensus 96 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 175 (407)
..|++++|...|++.+..... -+.+...+.-.+-..|++++|++.|-++... +..+..+.-.+...|-...+.
T Consensus 502 ~ngd~dka~~~ykeal~ndas------c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~ 574 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDAS------CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDP 574 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchH------HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCH
Confidence 789999999999999876432 2334444556788899999999999887553 235677888899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 176 AEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIM 255 (407)
Q Consensus 176 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 255 (407)
.+|++++.+.... ++.|+.....|...|-+.|+-.+|.+++-.--.. ++-+..+...|...|....-+++++.+|++.
T Consensus 575 aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~eka 652 (840)
T KOG2003|consen 575 AQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKA 652 (840)
T ss_pred HHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999988775 5667999999999999999999999987665543 5678889999999999999999999999987
Q ss_pred HhcCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh
Q 015416 256 VKKLKMDDASYKFMMKAL-SDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 256 ~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 328 (407)
.- ..|+..-|..++..| .+.|++++|.++|+....+ +|.+..+..+|++.....|- .++.++-+++.+.
T Consensus 653 al-iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk--fpedldclkflvri~~dlgl-~d~key~~klek~ 722 (840)
T KOG2003|consen 653 AL-IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK--FPEDLDCLKFLVRIAGDLGL-KDAKEYADKLEKA 722 (840)
T ss_pred Hh-cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CccchHHHHHHHHHhccccc-hhHHHHHHHHHHH
Confidence 65 678888888877665 4689999999999999987 58899999999998877774 4566666655543
No 38
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.69 E-value=6.8e-14 Score=129.84 Aligned_cols=312 Identities=13% Similarity=0.122 Sum_probs=240.3
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHh--hCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCC---
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEK--LGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGEN-SSVK--- 81 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~--- 81 (407)
.|...|-.+...+.. ++...++..|...... ..+.++.+...|.++..+...|++.+|...|..++..- +...
T Consensus 412 ~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de 490 (1018)
T KOG2002|consen 412 VDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDE 490 (1018)
T ss_pred ccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccc
Confidence 455666666666544 4444557777665421 01445778889999999999999999999999888651 0011
Q ss_pred ---CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 015416 82 ---MSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD 158 (407)
Q Consensus 82 ---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 158 (407)
++..+--.+..++-..++++.|.+.|..+.+..|. -+..|..++.+....+...+|...+......+ ..+
T Consensus 491 ~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~------YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~n 563 (1018)
T KOG2002|consen 491 GKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG------YIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSN 563 (1018)
T ss_pred cccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch------hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCC
Confidence 22223345667777788999999999999887644 33355555544455678889999999988754 567
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh------------cCChHHHHHHHHHHHHCCC
Q 015416 159 TLSFNNLIDQLCKNGMLAEAEELYGEMSDK-GVNPDEYTYGLLMDACFE------------VNRVDDGATYFRKMVDSGL 225 (407)
Q Consensus 159 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~~ 225 (407)
+..+..++..+.+...+..|.+-|....+. ...+|..+...|.+.|.. .+..++|+++|.++++..
T Consensus 564 p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d- 642 (1018)
T KOG2002|consen 564 PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND- 642 (1018)
T ss_pred cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-
Confidence 778888888999999999998877776642 234677787788887653 345788999999999864
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 015416 226 RPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFV 305 (407)
Q Consensus 226 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 305 (407)
+-|..+-|.++-.++..|++.+|..+|.++.+.......+|..++.+|...|+|..|+++|+...+.+....+..+..+|
T Consensus 643 pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~L 722 (1018)
T KOG2002|consen 643 PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYL 722 (1018)
T ss_pred cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 55888889999999999999999999999999655677899999999999999999999999999987777788899999
Q ss_pred HHHHhhcCcHHHHHHHHHHHHHh
Q 015416 306 KGELSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 306 ~~~~~~~g~~~~A~~~~~~~~~~ 328 (407)
++++.+.|++.+|.+.+......
T Consensus 723 ara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 723 ARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHh
Confidence 99999999999999988877643
No 39
>PRK12370 invasion protein regulator; Provisional
Probab=99.68 E-value=1.1e-13 Score=130.43 Aligned_cols=270 Identities=10% Similarity=-0.005 Sum_probs=200.4
Q ss_pred CCcchHHHHHHHHHH-----cCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 015416 45 SDGVVYGSLMKGYFM-----KGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCN---------NGKFDEALKLFDRM 110 (407)
Q Consensus 45 ~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~ 110 (407)
.+...|...+.+... .+.+++|+.+|+++++.+| .+...|..+..++.. .+++++|...++++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP---~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP---NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC---ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 345555565555322 2456899999999999874 356677777665542 24589999999999
Q ss_pred HhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 015416 111 KNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGV 190 (407)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 190 (407)
.+..+. +..++..+..++...|++++|...|++.++.+ |.+...+..+..++...|++++|+..++++.+.
T Consensus 331 l~ldP~------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l-- 401 (553)
T PRK12370 331 TELDHN------NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL-- 401 (553)
T ss_pred HhcCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 988765 67788899999999999999999999999876 556778889999999999999999999999985
Q ss_pred CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 015416 191 NPD-EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFM 269 (407)
Q Consensus 191 ~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 269 (407)
.|+ ...+..++..+...|++++|...++++.+...+.+...+..+..++...|++++|...+.++....+.+......+
T Consensus 402 ~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l 481 (553)
T PRK12370 402 DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLL 481 (553)
T ss_pred CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHH
Confidence 344 3333445556777899999999999988653222455678888999999999999999999877655566667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHH
Q 015416 270 MKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAE 331 (407)
Q Consensus 270 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 331 (407)
...|...| +.|...++.+.+...-.+..... +...|.-.|+.+.+..+ +++.+.+..
T Consensus 482 ~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~~~ 538 (553)
T PRK12370 482 YAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNEDNI 538 (553)
T ss_pred HHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccchH
Confidence 77778777 47888888877653222222222 44456667777777776 777766543
No 40
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=1.5e-13 Score=118.46 Aligned_cols=366 Identities=16% Similarity=0.061 Sum_probs=236.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCC-cchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHH
Q 015416 13 YSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSD-GVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVL 91 (407)
Q Consensus 13 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (407)
+-...+-|.+.|.+++|++.|.+.++. .|+ +..|.....+|...|+|+++++.-.++++.+| .-+-++..-.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l----~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P---~Y~KAl~RRA 190 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL----CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNP---DYVKALLRRA 190 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc----CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCc---HHHHHHHHHH
Confidence 445567788999999999999999985 456 88899999999999999999999999988763 2344555555
Q ss_pred HHHHhcCCHHHHHHH----------------------HHHH--------HhcCCCCCccccccchHHHHHHHH-------
Q 015416 92 DALCNNGKFDEALKL----------------------FDRM--------KNEHNPPKRLAVNLGSFNVMADGY------- 134 (407)
Q Consensus 92 ~~~~~~~~~~~A~~~----------------------~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~------- 134 (407)
.++-..|++++|+.- +... .+.+.+| .-|+.....+....+
T Consensus 191 ~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p--~lPS~~fi~syf~sF~~~~~~~ 268 (606)
T KOG0547|consen 191 SAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPP--VLPSATFIASYFGSFHADPKPL 268 (606)
T ss_pred HHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCC--CCCcHHHHHHHHhhcccccccc
Confidence 556666666555431 1110 0100111 111211111111111
Q ss_pred ----------------Hh--cC---CHHHHHHHHHHHhhC---CCCCC---------HHHHHHHHHHHHHcCCHHHHHHH
Q 015416 135 ----------------CG--QG---RFKDAIEVFRKMGEY---RCSPD---------TLSFNNLIDQLCKNGMLAEAEEL 181 (407)
Q Consensus 135 ----------------~~--~g---~~~~A~~~~~~~~~~---~~~~~---------~~~~~~l~~~~~~~g~~~~a~~~ 181 (407)
.. .+ .+.+|...+.+-... ....+ ..+....+..+.-.|+.-.|..-
T Consensus 269 ~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d 348 (606)
T KOG0547|consen 269 FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQED 348 (606)
T ss_pred ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhh
Confidence 10 01 122333222221110 00111 22333334445567888889999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 015416 182 YGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKM 261 (407)
Q Consensus 182 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 261 (407)
|+..++.... +...|.-+..+|....+.++.++.|....+.+ +-+..+|..-++.+.-.+++++|..-|++.....|.
T Consensus 349 ~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe 426 (606)
T KOG0547|consen 349 FDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE 426 (606)
T ss_pred HHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh
Confidence 9988875433 23337778888888899999999999888754 335668888888888888999999999998887777
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHH----------
Q 015416 262 DDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAE---------- 331 (407)
Q Consensus 262 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------- 331 (407)
+...|..+.-+..+.++++++...|++...+ +|..+++|...+..+...+++++|.+.+++..+....
T Consensus 427 ~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~p 504 (606)
T KOG0547|consen 427 NAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAP 504 (606)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchh
Confidence 8888888888888888999999999999887 4788888999999999999999999998887754322
Q ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccccccccccChhhHhhHHHHhcCcccchhhhhh
Q 015416 332 ---------------AKAREAEAAEAAKRSARAAIASLIPSKFGDKVGGTEMADNANANEAASVAEAQAGKEVNLEEATA 396 (407)
Q Consensus 332 ---------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~~~~~~~~~~~~ 396 (407)
..+..+...+...+|.---.+.-|+.+....+ +.+||+.+.+..+...--..+=-|
T Consensus 505 lV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~---------~i~eAielFEksa~lArt~~E~~~ 575 (606)
T KOG0547|consen 505 LVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRG---------KIDEAIELFEKSAQLARTESEMVH 575 (606)
T ss_pred hhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHh---------hHHHHHHHHHHHHHHHHhHHHHHH
Confidence 12222333333334444444455555555555 777777777776665444333334
Q ss_pred hhhh
Q 015416 397 VESA 400 (407)
Q Consensus 397 ~~~~ 400 (407)
..|+
T Consensus 576 a~s~ 579 (606)
T KOG0547|consen 576 AYSL 579 (606)
T ss_pred HHHH
Confidence 4443
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=6.1e-13 Score=120.12 Aligned_cols=266 Identities=12% Similarity=0.089 Sum_probs=208.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHH--HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHH
Q 015416 13 YSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYG--SLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSV 90 (407)
Q Consensus 13 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (407)
|-....+..+.|+++.|...|.++.+. .|+..... .....+...|+++.|...++++.+.. |.+...+..+
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~----~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~---P~~~~al~ll 193 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAEL----ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA---PRHPEVLRLA 193 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHH
Confidence 333345558999999999999999874 44554333 34678899999999999999999887 5577888999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCccc--cccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 015416 91 LDALCNNGKFDEALKLFDRMKNEHNPPKRLA--VNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQ 168 (407)
Q Consensus 91 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 168 (407)
..+|.+.|++++|..++..+.+....++... ....+|..++.......+.+...++++.+... .+.+......+...
T Consensus 194 ~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~ 272 (398)
T PRK10747 194 EQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEH 272 (398)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHH
Confidence 9999999999999999999998765421100 00013344444445555667777777777553 35678888999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 015416 169 LCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEA 248 (407)
Q Consensus 169 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 248 (407)
+...|+.++|..++++..+. +|+.... ++.+....++.+++.+..+...+.. +-|...+..++..+.+.+++++|
T Consensus 273 l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A 347 (398)
T PRK10747 273 LIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEA 347 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999873 5555322 3344446699999999999999763 45677889999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 249 KSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
.+.|+.+.+ ..|+...+..+..++.+.|+.++|.+++++.+..
T Consensus 348 ~~~le~al~-~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 348 SLAFRAALK-QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHh-cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999998 5688888999999999999999999999988653
No 42
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.67 E-value=6.5e-13 Score=122.61 Aligned_cols=310 Identities=13% Similarity=0.111 Sum_probs=240.2
Q ss_pred CcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhh
Q 015416 7 VADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVA 86 (407)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (407)
+.+...|.+|...|-..|+.+++...+-.... -.|.|...|..+.....+.|++..|.-+|.++++.+ |++...
T Consensus 170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH---L~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~---p~n~~~ 243 (895)
T KOG2076|consen 170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH---LNPKDYELWKRLADLSEQLGNINQARYCYSRAIQAN---PSNWEL 243 (895)
T ss_pred ccchhhHHHHHHHHHHcccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC---CcchHH
Confidence 45677899999999999999999988866655 355688999999999999999999999999999987 566666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHHHHHHH
Q 015416 87 NNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY-RCSPDTLSFNNL 165 (407)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l 165 (407)
+-.-...|-+.|+...|...|.++....++. ........--..+..|...++.+.|.+.++..... +-..+...++.+
T Consensus 244 ~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~-d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ 322 (895)
T KOG2076|consen 244 IYERSSLYQKTGDLKRAMETFLQLLQLDPPV-DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNIL 322 (895)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHhhCCch-hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHH
Confidence 6667788999999999999999999886632 11111122334466677788889999998887762 123455678899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCC---------------------------CHHHHHHHHHHHHhcCChHHHHHHHH
Q 015416 166 IDQLCKNGMLAEAEELYGEMSDKGVNP---------------------------DEYTYGLLMDACFEVNRVDDGATYFR 218 (407)
Q Consensus 166 ~~~~~~~g~~~~a~~~~~~~~~~~~~p---------------------------~~~~~~~l~~~~~~~g~~~~a~~~~~ 218 (407)
+..+.+...++.+......+......+ +... .-+.-++.+....+....+..
T Consensus 323 ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~ 401 (895)
T KOG2076|consen 323 AELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLH 401 (895)
T ss_pred HHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHH
Confidence 999999999999998887776521122 2222 123334445555555555566
Q ss_pred HHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 015416 219 KMVDSGLRP--NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKM-DDASYKFMMKALSDGGKLDEILEIVGGILDDGGI 295 (407)
Q Consensus 219 ~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 295 (407)
.+.+..+.| +...|..+..+|...|++.+|+.+|..+..+.+. +...|..++++|...|.+++|++.|+.++...
T Consensus 402 ~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-- 479 (895)
T KOG2076|consen 402 FLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-- 479 (895)
T ss_pred HHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC--
Confidence 666655333 4568999999999999999999999999983322 46789999999999999999999999999974
Q ss_pred CCcHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015416 296 EFSEELQEFVKGELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 296 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 326 (407)
|.+......|...+.+.|+.++|.+.++.+.
T Consensus 480 p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 480 PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 6666788889999999999999999999854
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.65 E-value=1e-12 Score=119.32 Aligned_cols=269 Identities=14% Similarity=0.061 Sum_probs=198.3
Q ss_pred CcCHHH-HHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcc--hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCc
Q 015416 7 VADPVV-YSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGV--VYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMS 83 (407)
Q Consensus 7 ~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 83 (407)
.|++.. +-....++.+.|+++.|.+.+.+..+. .|+.. ........+...|+++.|...++.+.+.. |.+
T Consensus 114 ~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~----~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~---P~~ 186 (409)
T TIGR00540 114 AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL----AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA---PRH 186 (409)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCC
Confidence 455444 345567788899999999999999875 24443 44446888999999999999999999987 446
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHH----HHHHHHHhcCCHHHHHHHHHHHhhCC---CC
Q 015416 84 AVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFN----VMADGYCGQGRFKDAIEVFRKMGEYR---CS 156 (407)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~---~~ 156 (407)
..++..+..++...|+++.|.+.+..+.+.+..+ ...+. .....+...+..++..+.+..+.... .+
T Consensus 187 ~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~------~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~ 260 (409)
T TIGR00540 187 KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD------DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRR 260 (409)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHh
Confidence 7788899999999999999999999999886542 11221 11111122333333334554444432 12
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HH
Q 015416 157 PDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYT---YGLLMDACFEVNRVDDGATYFRKMVDSGLRPNL--AV 231 (407)
Q Consensus 157 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~ 231 (407)
.+...+..++..+...|++++|...+++..+. .|+... ...........++.+.+.+.++...+.. +-|. ..
T Consensus 261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~l 337 (409)
T TIGR00540 261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCI 337 (409)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHH
Confidence 37888999999999999999999999999985 344332 1222223344578888999999888742 3344 66
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 232 YNRLVGKLVQVGMLDEAKSFFDIMVK-KLKMDDASYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 232 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
..+++..+.+.|++++|.+.|+.... ...|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 338 l~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 338 NRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77999999999999999999996333 3567888888999999999999999999998754
No 44
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=6.3e-13 Score=108.87 Aligned_cols=257 Identities=11% Similarity=0.163 Sum_probs=193.9
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcC
Q 015416 59 MKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQG 138 (407)
Q Consensus 59 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 138 (407)
-..++++|+++|-+|.+.+ +.+..+..+|.+.|.+.|..|.|+++.+.+.+.-.-+ ......+...|..-|...|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d---~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT--~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED---PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLT--FEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred hhcCcchHHHHHHHHHhcC---chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHHHHHHhh
Confidence 3578999999999999876 5567788889999999999999999999988752111 0012234556778899999
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHH
Q 015416 139 RFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPD----EYTYGLLMDACFEVNRVDDGA 214 (407)
Q Consensus 139 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~ 214 (407)
-++.|+.+|..+.+.+ ..-......|+..|....+|++|+.+-+++.+.+-.+. ...|.-+...+....+.+.|.
T Consensus 122 l~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 122 LLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 9999999999998865 34456778899999999999999999999988665543 345667777777888999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 015416 215 TYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKL-KMDDASYKFMMKALSDGGKLDEILEIVGGILDDG 293 (407)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 293 (407)
..+.+..+.+ +..+..-..+++.+...|+++.|.+.++.+.+.. ..-+.+...|..+|.+.|+.++....+.++.+.+
T Consensus 201 ~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 201 ELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 9999998754 3345566678889999999999999999998833 2346678888999999999999999999988863
Q ss_pred CCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 015416 294 GIEFSEELQEFVKGELSKEGREEEVVKLMEKK 325 (407)
Q Consensus 294 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 325 (407)
+....-..+.+......-.+.|...+.+-
T Consensus 280 ---~g~~~~l~l~~lie~~~G~~~Aq~~l~~Q 308 (389)
T COG2956 280 ---TGADAELMLADLIELQEGIDAAQAYLTRQ 308 (389)
T ss_pred ---CCccHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 34433334444333333344555444443
No 45
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=3e-14 Score=116.71 Aligned_cols=230 Identities=11% Similarity=0.080 Sum_probs=174.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHH
Q 015416 51 GSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVM 130 (407)
Q Consensus 51 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l 130 (407)
+.+.++|.+.|.+.+|.+.|+..+.+ .|-+.||..|.++|.+..++..|+.+|.+-++.-|. ++.....+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~------~VT~l~g~ 296 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF------DVTYLLGQ 296 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc------hhhhhhhh
Confidence 56788888888888888888887765 345667777888888888888888888777665432 55556667
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 015416 131 ADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRV 210 (407)
Q Consensus 131 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 210 (407)
...+-..++.++|.++|+...+.. +.++.....+...|.-.++++-|+.+|+++++.|+. ++..|+.+.-+|...+++
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcch
Confidence 777777888888888888877764 456666667777777788888888888888887755 677788888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015416 211 DDGATYFRKMVDSGLRPNL--AVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGG 288 (407)
Q Consensus 211 ~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 288 (407)
+-++..|.+.+..--.|+. .+|..|.......|++..|.+.|+-.+...+.+...++.|...-.+.|++++|..+++.
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 8888888877754333443 37777888778888888888888888777777778888888888888888888888887
Q ss_pred HHhc
Q 015416 289 ILDD 292 (407)
Q Consensus 289 ~~~~ 292 (407)
+...
T Consensus 455 A~s~ 458 (478)
T KOG1129|consen 455 AKSV 458 (478)
T ss_pred hhhh
Confidence 7664
No 46
>PRK12370 invasion protein regulator; Provisional
Probab=99.64 E-value=4.8e-13 Score=126.05 Aligned_cols=267 Identities=9% Similarity=-0.024 Sum_probs=195.6
Q ss_pred CHHHHHHHHHHHHh-----cCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHH---------cCCHHHHHHHHHHHH
Q 015416 9 DPVVYSYLMLGFVR-----DGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFM---------KGMEEEAMECYNEAV 74 (407)
Q Consensus 9 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~ 74 (407)
+...|...+.+-.. .+++++|+.+|++..+. .|.+...|..+..++.. .+++++|...+++++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l---dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM---SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 44555556555322 23468999999999985 33356677777766553 245899999999999
Q ss_pred hCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 015416 75 GENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYR 154 (407)
Q Consensus 75 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 154 (407)
+.+ |.+..++..+..++...|++++|...|+++.+..+. +...+..+..++...|++++|+..+++..+..
T Consensus 332 ~ld---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~ 402 (553)
T PRK12370 332 ELD---HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI------SADIKYYYGWNLFMAGQLEEALQTINECLKLD 402 (553)
T ss_pred hcC---CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 987 457888889999999999999999999999998765 56688899999999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 015416 155 CSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNR 234 (407)
Q Consensus 155 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 234 (407)
|.+...+..++..+...|++++|+..++++.....+-++..+..+..++...|++++|...+.++.... +.+....+.
T Consensus 403 -P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~ 480 (553)
T PRK12370 403 -PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNL 480 (553)
T ss_pred -CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHH
Confidence 223334444555677789999999999998865322245567788889999999999999999987632 223446666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 235 LVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 235 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
+...|...| +.|...++.+.+...-.......+...|.-.|+-+.+..+ +++.+.
T Consensus 481 l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 481 LYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 777778777 4888888887772211111122244555566776666666 777664
No 47
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=4.4e-12 Score=107.88 Aligned_cols=308 Identities=13% Similarity=0.179 Sum_probs=228.5
Q ss_pred CCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchh
Q 015416 6 FVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAV 85 (407)
Q Consensus 6 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 85 (407)
.+.+..+|.++|.+.++.-..+.|.++|++.... ..+.+..+||.+|.+-.-. ...++..+|.+.. +.||..
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~--k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqk--m~Pnl~ 274 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAA--KGKVYREAFNGLIGASSYS----VGKKLVAEMISQK--MTPNLF 274 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh--hheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhh--cCCchH
Confidence 4557789999999999999999999999999887 6778888999988775433 3378889999888 899999
Q ss_pred hHHHHHHHHHhcCCHHH----HHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHH-HHHHHHHHhh----CCC-
Q 015416 86 ANNSVLDALCNNGKFDE----ALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKD-AIEVFRKMGE----YRC- 155 (407)
Q Consensus 86 ~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~----~~~- 155 (407)
|+|.++.+..+.|+++. |.+++.+|++.|+.| ...+|..++..+++.++..+ +..++.++.. ..+
T Consensus 275 TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVeP-----sLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 275 TFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEP-----SLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCc-----chhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 99999999999998765 456778899999988 88899999999999988755 4444444432 111
Q ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 015416 156 ---SPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKG----VNPD---EYTYGLLMDACFEVNRVDDGATYFRKMVDSGL 225 (407)
Q Consensus 156 ---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 225 (407)
+.|...|..-+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....+.....+.-...|+.|.-.-+
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 2344567777888888888888888776654321 3333 33466777778888889999999999986667
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcC-CH--------HH-----HHHHH----
Q 015416 226 RPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK-KLKMDDASYKFMMKALSDGG-KL--------DE-----ILEIV---- 286 (407)
Q Consensus 226 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g-~~--------~~-----A~~~~---- 286 (407)
-|+..+...++++....|+++-.-++|..+.. +..........++..+++.. .. .. |..++
T Consensus 430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e 509 (625)
T KOG4422|consen 430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYE 509 (625)
T ss_pred cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888999999999999988888888877 44444444444444444433 10 00 11111
Q ss_pred ---HHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 287 ---GGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 287 ---~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
.++.+ ..........++-.+.|.|+.++|.+++..+.+.+
T Consensus 510 ~~~~R~r~---~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 510 SQPIRQRA---QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred hhHHHHHh---ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 12222 34566667777888999999999999999886544
No 48
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.63 E-value=6.6e-13 Score=111.54 Aligned_cols=202 Identities=16% Similarity=0.136 Sum_probs=159.1
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccccc
Q 015416 45 SDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124 (407)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (407)
.....+..++..+...|++++|...|++++... +.+...+..+...+...|++++|.+.+++..+..+. +.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~ 99 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD---PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN------NG 99 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CH
Confidence 345677888888889999999999999888765 445677888888888899999999999888876543 44
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015416 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYRC-SPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDA 203 (407)
Q Consensus 125 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 203 (407)
..+..+...+...|++++|.+.|++...... +.....+..+..++...|++++|...+.+..+.. +.+...+..+...
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 178 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAEL 178 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHH
Confidence 5777888888899999999999988876421 2234567778888888999999999999888753 3346677788888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 204 CFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 204 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 257 (407)
+...|++++|...+++..+. .+.+...+..++..+...|+.+.|..+++.+..
T Consensus 179 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 179 YYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 88999999999999988875 344566777788888888999999888877665
No 49
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.6e-12 Score=114.12 Aligned_cols=284 Identities=13% Similarity=0.067 Sum_probs=227.1
Q ss_pred CCCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCch
Q 015416 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSA 84 (407)
Q Consensus 5 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 84 (407)
|+.-|+.....-..-+...+++.+..++++.+.+. .|+....+..-|.++...|+..+-..+-.++.... |...
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~---dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y---P~~a 312 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEK---DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY---PSKA 312 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh---CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC---CCCC
Confidence 34556667777778888899999999999999984 67788888888889999999888888888888775 5578
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 015416 85 VANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNN 164 (407)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 164 (407)
.+|-+++--|.-.|+..+|.+.|.+....++. -...|-.++..|+-.|..++|+..+....+.= +..-.-+-.
T Consensus 313 ~sW~aVg~YYl~i~k~seARry~SKat~lD~~------fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LY 385 (611)
T KOG1173|consen 313 LSWFAVGCYYLMIGKYSEARRYFSKATTLDPT------FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLY 385 (611)
T ss_pred cchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc------ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHH
Confidence 88999998888889999999999998776544 23389999999999999999999888776541 122223334
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----C--CCCCHHHHHHHHHH
Q 015416 165 LIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDS----G--LRPNLAVYNRLVGK 238 (407)
Q Consensus 165 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~ 238 (407)
++--|.+.+.+..|.++|.++... .+.|+...+-+.-.....+.+.+|..+|+..+.. + ..--..+++.|+++
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~ 464 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA 464 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence 566788889999999999999875 3446778888888888889999999999887731 0 01134478999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 015416 239 LVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFV 305 (407)
Q Consensus 239 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 305 (407)
|.+.+.+++|+..+++.+...+.+..++..++-.|...|+++.|++.|.+.+.. .|+..+-..+
T Consensus 465 ~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l---~p~n~~~~~l 528 (611)
T KOG1173|consen 465 YRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL---KPDNIFISEL 528 (611)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc---CCccHHHHHH
Confidence 999999999999999999988889999999999999999999999999999875 5665444333
No 50
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.62 E-value=5.2e-13 Score=114.24 Aligned_cols=189 Identities=10% Similarity=0.052 Sum_probs=156.2
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 015416 135 CGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGA 214 (407)
Q Consensus 135 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 214 (407)
...|++++|.+.|++.+.... .-......+.-.+-..|++++|+..|-++... +..+......+...|....+..+|+
T Consensus 501 f~ngd~dka~~~ykeal~nda-sc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDA-SCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eecCcHHHHHHHHHHHHcCch-HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 446789999999999887542 22333444566678889999999999888653 3446778888999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 015416 215 TYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGG 294 (407)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 294 (407)
+++.+.... ++.|+.+...|...|-+.|+-..|++++-.--.-+|.+..+...|...|....-+++++.+|+++--
T Consensus 579 e~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--- 654 (840)
T KOG2003|consen 579 ELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--- 654 (840)
T ss_pred HHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh---
Confidence 999888764 5667889999999999999999999988777777888999999999999999999999999999865
Q ss_pred CCCcHHHHHHHH-HHHhhcCcHHHHHHHHHHHHHhh
Q 015416 295 IEFSEELQEFVK-GELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 295 ~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
+.|+..-|..++ .++.|.|++.+|.++++.+.++-
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 588888887665 57788999999999999987654
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.62 E-value=1.2e-12 Score=110.02 Aligned_cols=197 Identities=13% Similarity=0.049 Sum_probs=97.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACF 205 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 205 (407)
.+..+...|...|++++|...+++..+.. +.+...+..++..+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 33444444444444444444444444332 2233344444444444444555544444444432 122334444444445
Q ss_pred hcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015416 206 EVNRVDDGATYFRKMVDSGL-RPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILE 284 (407)
Q Consensus 206 ~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 284 (407)
..|++++|.+.++++..... +.....+..++..+...|++++|...+.+.....+.+...+..+...+...|++++|..
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 55555555555555443211 11223444455555566666666666666555444445555556666666666666666
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015416 285 IVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 326 (407)
.++++... .+.+...+..++..+...|+.++|..+.+.+.
T Consensus 191 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 191 YLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66665554 13344444455555556666666666555543
No 52
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.57 E-value=7e-13 Score=108.78 Aligned_cols=235 Identities=13% Similarity=0.061 Sum_probs=203.9
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHH
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANN 88 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
|-..-+.+...|.+.|-+.+|.+-|+.-.+. .|-+.+|..|.+.|.+..++..|+.+|.+-+..- |.++....
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f---P~~VT~l~ 294 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF---PFDVTYLL 294 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC---Cchhhhhh
Confidence 3334478899999999999999999998874 5788899999999999999999999999998763 55666667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 015416 89 SVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQ 168 (407)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 168 (407)
...+.+-..++.++|.++|+.+.+..+. ++.+...+...|.-.++++-|+.+|+++++.|+ .+...|+.+.-+
T Consensus 295 g~ARi~eam~~~~~a~~lYk~vlk~~~~------nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLC 367 (478)
T KOG1129|consen 295 GQARIHEAMEQQEDALQLYKLVLKLHPI------NVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLC 367 (478)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHhcCCc------cceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHH
Confidence 7889999999999999999999988654 666777778889999999999999999999995 688999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 015416 169 LCKNGMLAEAEELYGEMSDKGVNPD--EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLD 246 (407)
Q Consensus 169 ~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 246 (407)
|.-.++++-++.-|++.+..-..|+ ...|..+.......|++..|.+.|+-.+..+ ..+...++.|.-.-.+.|+++
T Consensus 368 C~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~ 446 (478)
T KOG1129|consen 368 CLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDIL 446 (478)
T ss_pred HHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchH
Confidence 9999999999999999987544455 4568888888899999999999999998764 446779999999999999999
Q ss_pred HHHHHHHHHHhc
Q 015416 247 EAKSFFDIMVKK 258 (407)
Q Consensus 247 ~A~~~~~~~~~~ 258 (407)
.|..++......
T Consensus 447 ~Arsll~~A~s~ 458 (478)
T KOG1129|consen 447 GARSLLNAAKSV 458 (478)
T ss_pred HHHHHHHHhhhh
Confidence 999999988873
No 53
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.57 E-value=7.5e-11 Score=105.58 Aligned_cols=306 Identities=12% Similarity=0.019 Sum_probs=220.0
Q ss_pred CCCCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 015416 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVS--DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVK 81 (407)
Q Consensus 4 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 81 (407)
.|+..+-.-|-.=...|-+.|..-.+..+....+.- |+.. -..+|..-...|.+.+.++-|..+|..+++.. +
T Consensus 473 ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigi--gvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf---p 547 (913)
T KOG0495|consen 473 NGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGI--GVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF---P 547 (913)
T ss_pred cceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhh--ccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc---c
Confidence 344455555555555555555555555555555543 3221 23567777777777788888888888887764 4
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 015416 82 MSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLS 161 (407)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 161 (407)
.+...|......--..|..++-..+|+++...-+. ....|......+...|++..|..++....+.. +.+...
T Consensus 548 ~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk------ae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseei 620 (913)
T KOG0495|consen 548 CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK------AEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEI 620 (913)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc------chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHH
Confidence 56667777766666667788888888888776544 44466666777777888888888888887764 446667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q 015416 162 FNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNL-AVYNRLVGKLV 240 (407)
Q Consensus 162 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 240 (407)
|..-+..-..+..++.|..+|.+... ..|+...|.--+..-...+..++|.+++++.++. -|+. ..|..+++.+-
T Consensus 621 wlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHH
Confidence 87777888888888888888888776 4567777777777777778888888888888773 3444 37778888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHH
Q 015416 241 QVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVK 320 (407)
Q Consensus 241 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 320 (407)
+.++.+.|...|..-.+..|..+..|..+...--+.|.+-.|..++++.+-++ |-+...|...++.-.|.|..+.|..
T Consensus 697 ~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN--Pk~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN--PKNALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC--CCcchhHHHHHHHHHHcCCHHHHHH
Confidence 88888888888887777777777788888888788888888888888887764 6667777778888888888888887
Q ss_pred HHHHHHH
Q 015416 321 LMEKKER 327 (407)
Q Consensus 321 ~~~~~~~ 327 (407)
++.+...
T Consensus 775 lmakALQ 781 (913)
T KOG0495|consen 775 LMAKALQ 781 (913)
T ss_pred HHHHHHH
Confidence 7776653
No 54
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=8.6e-11 Score=101.75 Aligned_cols=221 Identities=14% Similarity=0.118 Sum_probs=156.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH
Q 015416 97 NGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLA 176 (407)
Q Consensus 97 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 176 (407)
.|+.-.|..-|+..+...+.+ ...|--+..+|....+.++..+.|....+.+ +.++.+|..-...+.-.++++
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~------~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAF------NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred cCCchhhhhhHHHHHhcCccc------chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHH
Confidence 355555666666665554442 2236667777888888888888888887766 556777777777777778888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015416 177 EAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMV 256 (407)
Q Consensus 177 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 256 (407)
+|..=|++.+... +-+...|..+..+..+.+++++++..|++..+. ++.-+.+|+.....+..+++++.|.+.|+..+
T Consensus 412 ~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 412 EAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 8888888887742 224666777777777888888888888888865 55566788888888888888888888888887
Q ss_pred hcCCC------CHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh
Q 015416 257 KKLKM------DDASYKFMM-KALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 257 ~~~~~------~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 328 (407)
..-+. ++..+..-. ..+.-.+++..|+.+++++.+.+ |-....|..|+....+.|+.++|+++|++....
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~D--pkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELD--PKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred hhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccC--chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 72222 222222111 11223478888888888888753 445558888899889999999999999887543
No 55
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.55 E-value=1.1e-10 Score=104.52 Aligned_cols=297 Identities=10% Similarity=0.006 Sum_probs=239.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHH
Q 015416 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSV 90 (407)
Q Consensus 11 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (407)
.||+.-...|.+.+.++-|..+|....+- .+.+...|......--..|..+.-..+|++++..- +.....|...
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv---fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~---pkae~lwlM~ 590 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV---FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC---PKAEILWLMY 590 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh---ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC---CcchhHHHHH
Confidence 46777778888889999999999999884 56688889888888888899999999999999874 5566778778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 015416 91 LDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLC 170 (407)
Q Consensus 91 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 170 (407)
...+-..|+...|..++.++.+..+. +...|..-+..-....+++.|..+|.+.... .|+...|.--+..--
T Consensus 591 ake~w~agdv~~ar~il~~af~~~pn------seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er 662 (913)
T KOG0495|consen 591 AKEKWKAGDVPAARVILDQAFEANPN------SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLER 662 (913)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhCCC------cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHH
Confidence 88888889999999999999887665 5668888888899999999999999998875 478888877777777
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015416 171 KNGMLAEAEELYGEMSDKGVNPD-EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAK 249 (407)
Q Consensus 171 ~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 249 (407)
-.+..++|.+++++.++. -|+ ...|..+.+.+-+.++++.|...|..-.+. ++-....|..|...--+.|.+-.|.
T Consensus 663 ~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR 739 (913)
T KOG0495|consen 663 YLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRAR 739 (913)
T ss_pred HhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHH
Confidence 788999999999988874 344 567888888899999999999888876653 3445668888888888889999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015416 250 SFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 326 (407)
.++++..-..|.+...|...++.-.+.|+.+.|..++.++++.. |.+...|..-+...-+.++-..+...+++..
T Consensus 740 ~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec--p~sg~LWaEaI~le~~~~rkTks~DALkkce 814 (913)
T KOG0495|consen 740 SILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQEC--PSSGLLWAEAIWLEPRPQRKTKSIDALKKCE 814 (913)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccchhHHHHHHhccCcccchHHHHHHHhcc
Confidence 99999988888899999999999999999999999998888863 5555555555555555555555555554443
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.7e-11 Score=107.94 Aligned_cols=273 Identities=11% Similarity=0.052 Sum_probs=225.3
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccccc
Q 015416 45 SDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124 (407)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (407)
.++........-+...+++.+..++++.....+ |+....+..-|.++...|+..+-.-+=.++.+..|. .+
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d---pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~------~a 312 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD---PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS------KA 312 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC---CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC------CC
Confidence 355566666777888999999999999999987 667777777788999999988888888888888765 67
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015416 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDAC 204 (407)
Q Consensus 125 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 204 (407)
.+|-+++--|.-.|+..+|.+.|.+....+ +.=...|-..+..|.-.|..++|+..|..+-+. ++-..--+.-+.--|
T Consensus 313 ~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey 390 (611)
T KOG1173|consen 313 LSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEY 390 (611)
T ss_pred cchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHH
Confidence 799999999999999999999999988764 223457889999999999999999999888663 111111233355668
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHhcC
Q 015416 205 FEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK-------KLKMDDASYKFMMKALSDGG 277 (407)
Q Consensus 205 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g 277 (407)
.+.+.++.|.++|.++.... +.|+.+.+-++-.....+.+.+|..+|+..+. ..+.-..+++.|+.+|.+.+
T Consensus 391 ~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~ 469 (611)
T KOG1173|consen 391 MRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN 469 (611)
T ss_pred HHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence 88999999999999999742 55777889998888889999999999998885 11124567899999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHH
Q 015416 278 KLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAE 331 (407)
Q Consensus 278 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 331 (407)
++++|+..+++.+.. .+.+..++..++-.|...|+++.|.+.|.+.....+.
T Consensus 470 ~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred hHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 999999999999997 4888899999999999999999999999998865533
No 57
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=9.2e-11 Score=100.00 Aligned_cols=306 Identities=13% Similarity=0.197 Sum_probs=224.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHH--HHHcCCHHHH-HHHHHHHHhCCC---------
Q 015416 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKG--YFMKGMEEEA-MECYNEAVGENS--------- 78 (407)
Q Consensus 11 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A-~~~~~~~~~~~~--------- 78 (407)
.+=|.|+.. ..+|....+.-+|+.|.+. |++.+...-..|++. |....++.-| .+.|-.|.+.+.
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e--~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSE--NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhc--CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 345666665 4678899999999999998 777777766665543 3333333322 122323322210
Q ss_pred --------CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 79 --------SVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKM 150 (407)
Q Consensus 79 --------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 150 (407)
..|.+..++..+|.++++--..+.|.+++++..+...+. +..+||.+|.+-.-.. ..+++.+|
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv-----~~~aFN~lI~~~S~~~----~K~Lv~EM 264 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKV-----YREAFNGLIGASSYSV----GKKLVAEM 264 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhee-----eHHhhhhhhhHHHhhc----cHHHHHHH
Confidence 135567889999999999999999999999988766554 7778998887755333 37889999
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHH---
Q 015416 151 GEYRCSPDTLSFNNLIDQLCKNGMLAE----AEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDD-GATYFRKMVD--- 222 (407)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~--- 222 (407)
....+.||..|+|+++.+..+.|+++. |.+++.+|.+.|+.|...+|..++..+.+.++..+ +..++.++..
T Consensus 265 isqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~lt 344 (625)
T KOG4422|consen 265 ISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLT 344 (625)
T ss_pred HHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhc
Confidence 999999999999999999999998875 56788889999999999999999999988888754 4444444442
Q ss_pred -CCC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 223 -SGL---RP-NLAVYNRLVGKLVQVGMLDEAKSFFDIMVK-----KLKMDD---ASYKFMMKALSDGGKLDEILEIVGGI 289 (407)
Q Consensus 223 -~~~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~ 289 (407)
..+ .| +...|...+..|.+..+.+-|.++-.-+.. .++|+. .-|..+....+.....+.-...|+.+
T Consensus 345 GK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l 424 (625)
T KOG4422|consen 345 GKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL 424 (625)
T ss_pred cCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222 23 344666777778888898888888777766 233332 23566677778888889999999998
Q ss_pred HhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 290 LDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 290 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
+-. -+-|...+...+.++..-.|+++-.-+++..+..-+
T Consensus 425 VP~-~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 425 VPS-AYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred ccc-eecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 875 356888888888888888898888888888877655
No 58
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=4.5e-11 Score=101.33 Aligned_cols=308 Identities=11% Similarity=0.047 Sum_probs=232.1
Q ss_pred CcCHHHHHHHHHHHHh--cCChhhH--HHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC
Q 015416 7 VADPVVYSYLMLGFVR--DGDSDGV--FRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKM 82 (407)
Q Consensus 7 ~p~~~~~~~li~~~~~--~g~~~~A--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 82 (407)
+|+..+...-+.++.. .++-..| ..++-+... -.+.|++....+..++...|+.++|+..|++....+| -
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~---~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dp---y 264 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNT---TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANP---D 264 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhc---cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCCh---h
Confidence 3443343333444333 3343333 444444444 4667889999999999999999999999999988763 2
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 015416 83 SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSF 162 (407)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 162 (407)
+........-.+...|+++....+...+...... ....|..-+.......+++.|+.+-++.++.. +.+...|
T Consensus 265 ~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~------ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~al 337 (564)
T KOG1174|consen 265 NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY------TASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEAL 337 (564)
T ss_pred hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhc------chhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHH
Confidence 3444444455567889998888888877654311 33345555666777889999999999998865 5567778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-
Q 015416 163 NNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLV-GKLV- 240 (407)
Q Consensus 163 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~- 240 (407)
-.-+..+...|++.+|.-.|+.++... +-+...|.-|+.+|...|.+.+|.-.-+...+. ++.+..+...++ ..+.
T Consensus 338 ilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~ 415 (564)
T KOG1174|consen 338 ILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFP 415 (564)
T ss_pred HhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeecc
Confidence 777888999999999999999998742 346889999999999999999998888777653 344555555553 2332
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHH
Q 015416 241 QVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVK 320 (407)
Q Consensus 241 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 320 (407)
....-++|.+++++.+...|.-....+.+...|...|+.+.++.++++.+.. .|+...+..|++.+.....+++|++
T Consensus 416 dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~---~~D~~LH~~Lgd~~~A~Ne~Q~am~ 492 (564)
T KOG1174|consen 416 DPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII---FPDVNLHNHLGDIMRAQNEPQKAME 492 (564)
T ss_pred CchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh---ccccHHHHHHHHHHHHhhhHHHHHH
Confidence 2334578999999998866666778889999999999999999999999985 6899999999999999999999999
Q ss_pred HHHHHHHhhHHH
Q 015416 321 LMEKKEREKAEA 332 (407)
Q Consensus 321 ~~~~~~~~~~~~ 332 (407)
.|....+..+..
T Consensus 493 ~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 493 YYYKALRQDPKS 504 (564)
T ss_pred HHHHHHhcCccc
Confidence 999998766543
No 59
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.52 E-value=1.9e-11 Score=105.80 Aligned_cols=227 Identities=12% Similarity=0.044 Sum_probs=140.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCC
Q 015416 61 GMEEEAMECYNEAVGENSSVKM-SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGR 139 (407)
Q Consensus 61 g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 139 (407)
+..+.++.-+.+++...+-.++ ....|..+...|...|++++|...|++.++..+. +..+|+.+...|...|+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~~~~~g~ 113 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD------MADAYNYLGIYLTQAGN 113 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHCCC
Confidence 3566677777777754321111 1345666777777788888888888887776544 55677788888888888
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 015416 140 FKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRK 219 (407)
Q Consensus 140 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 219 (407)
+++|...|++.++.. |.+..+|..++.++...|++++|++.|++..+. .|+..........+...+++++|...|.+
T Consensus 114 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 114 FDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 888888888877754 334567777777777788888888888887764 34322222222233455677888888866
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 220 MVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-------LKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 220 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
..... .|+...+ .......|+...+ ..+..+... .+....+|..++..+...|++++|+..|+++...
T Consensus 191 ~~~~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 191 RYEKL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHhhC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 55322 2322221 2223334555443 344444431 1223457888888888888888888888888875
Q ss_pred CCCCCcHHHHH
Q 015416 293 GGIEFSEELQE 303 (407)
Q Consensus 293 ~~~~~~~~~~~ 303 (407)
+ +++..-+.
T Consensus 266 ~--~~~~~e~~ 274 (296)
T PRK11189 266 N--VYNFVEHR 274 (296)
T ss_pred C--CchHHHHH
Confidence 3 34444333
No 60
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.52 E-value=5.3e-11 Score=103.03 Aligned_cols=199 Identities=16% Similarity=0.115 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHH
Q 015416 49 VYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFN 128 (407)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (407)
.|..++..+...|+++.|+..|+++++.+ |.+...|+.+...+...|++++|...|++.++..+. +..++.
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~------~~~a~~ 136 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALR---PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT------YNYAYL 136 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHH
Confidence 35555555556666666666666665554 334555555666666666666666666665554433 334555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 015416 129 VMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVN 208 (407)
Q Consensus 129 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 208 (407)
.++.++...|++++|++.|+...+.. |+..........+...+++++|...|.+.... ..|+...+ .......|
T Consensus 137 ~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~---~~~~~~lg 210 (296)
T PRK11189 137 NRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW---NIVEFYLG 210 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH---HHHHHHcc
Confidence 55555555666666666666555543 22211111112223345556666655444322 12221111 11222233
Q ss_pred ChHHHHHHHHHHHHC---C--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q 015416 209 RVDDGATYFRKMVDS---G--LRP-NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDD 263 (407)
Q Consensus 209 ~~~~a~~~~~~~~~~---~--~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 263 (407)
+...+ +.+..+.+. . +.| ...+|..++..+...|++++|...|++.....+|+.
T Consensus 211 ~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 211 KISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred CCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 33332 233333211 0 001 123555556666666666666666666655444443
No 61
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.52 E-value=1.6e-10 Score=105.70 Aligned_cols=292 Identities=17% Similarity=0.143 Sum_probs=212.7
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHH
Q 015416 16 LMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALC 95 (407)
Q Consensus 16 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (407)
....+...|++++|++.++.-.. .+..........+..+.+.|+.++|..+|..++..+ |.+..-|..+..+..
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~---~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN---Pdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEK---QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN---PDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhh---hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHh
Confidence 34567889999999999988766 356567777889999999999999999999999988 556777777777663
Q ss_pred hc-----CCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHH-HHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 015416 96 NN-----GKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFK-DAIEVFRKMGEYRCSPDTLSFNNLIDQL 169 (407)
Q Consensus 96 ~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 169 (407)
-. .+.+....+|+++....+... +...+.-.+.....+. .+..++..++..|+| .+|+.+-..|
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~-------~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly 153 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSD-------APRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLY 153 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCcccc-------chhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHH
Confidence 32 357788889998887764321 1111211222222232 345566777777854 3445555566
Q ss_pred HHcCCHHHHHHHHHHHHhC----C----------CCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHH
Q 015416 170 CKNGMLAEAEELYGEMSDK----G----------VNPDE--YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPN-LAVY 232 (407)
Q Consensus 170 ~~~g~~~~a~~~~~~~~~~----~----------~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~ 232 (407)
.......-...++...... + -+|+. .++..+...|-..|++++|++++++.+++ .|+ +..|
T Consensus 154 ~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely 231 (517)
T PF12569_consen 154 KDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELY 231 (517)
T ss_pred cChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHH
Confidence 6555555555555554321 1 12333 45567788899999999999999999985 455 6689
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHH--------HH
Q 015416 233 NRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQ--------EF 304 (407)
Q Consensus 233 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--------~~ 304 (407)
..-++.|-+.|++.+|...++.......-|...-+..+..+.+.|++++|.+++......+. .|....+ ..
T Consensus 232 ~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~-~~~~~L~~mQc~Wf~~e 310 (517)
T PF12569_consen 232 MTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV-DPLSNLNDMQCMWFETE 310 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC-CcccCHHHHHHHHHHHH
Confidence 99999999999999999999999997777888888899999999999999999998876542 3333221 33
Q ss_pred HHHHHhhcCcHHHHHHHHHHHH
Q 015416 305 VKGELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 305 l~~~~~~~g~~~~A~~~~~~~~ 326 (407)
.+.+|.+.|++..|++.+..+.
T Consensus 311 ~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 311 CAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHhhHHHHHHHHHHHH
Confidence 4779999999999998887776
No 62
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.52 E-value=7.7e-11 Score=99.69 Aligned_cols=285 Identities=13% Similarity=0.093 Sum_probs=226.5
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcC
Q 015416 59 MKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQG 138 (407)
Q Consensus 59 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 138 (407)
-.|+|.+|++...+..+.+ +-....|..-+.+-...|+.+.+-.++.++.+....+ +....-+........|
T Consensus 96 ~eG~~~qAEkl~~rnae~~---e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~-----~l~v~ltrarlll~~~ 167 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG---EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDD-----TLAVELTRARLLLNRR 167 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC---cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCc-----hHHHHHHHHHHHHhCC
Confidence 3699999999999987776 3345667777788889999999999999998874443 6667888889999999
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCChH
Q 015416 139 RFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDE-------YTYGLLMDACFEVNRVD 211 (407)
Q Consensus 139 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~ 211 (407)
+++.|..-+.++...+ +.+.........+|.+.|++.....++.++.+.|.-.+. .+|..++.-....+..+
T Consensus 168 d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~ 246 (400)
T COG3071 168 DYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE 246 (400)
T ss_pred CchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence 9999999999999876 677888999999999999999999999999998866553 46667777666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015416 212 DGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK-KLKMDDASYKFMMKALSDGGKLDEILEIVGGIL 290 (407)
Q Consensus 212 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 290 (407)
.-...++..-.. .+-++..-..++.-+.++|+.++|.++..+..+ ...|. ......+.+-++...-++..++-.
T Consensus 247 gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l 321 (400)
T COG3071 247 GLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWL 321 (400)
T ss_pred HHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHH
Confidence 666677766543 455677888899999999999999999999888 33333 344455677888999999999888
Q ss_pred hcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCcccccccc
Q 015416 291 DDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAEAKAREAEAAEAAKRSARAAIASLIPSKFGDKVGGTEMAD 370 (407)
Q Consensus 291 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 370 (407)
+.. +.++..+..|+..|.+.+.|.+|...|+...+.+.. ..-+..++..+...+
T Consensus 322 ~~h--~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-----------------~~~~~~la~~~~~~g------- 375 (400)
T COG3071 322 KQH--PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-----------------ASDYAELADALDQLG------- 375 (400)
T ss_pred HhC--CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-----------------hhhHHHHHHHHHHcC-------
Confidence 875 555588999999999999999999999977665533 233445556666777
Q ss_pred ccChhhHhhHHHHhc
Q 015416 371 NANANEAASVAEAQA 385 (407)
Q Consensus 371 ~~~~~ea~~~~~~~~ 385 (407)
...+|.+++++..
T Consensus 376 --~~~~A~~~r~e~L 388 (400)
T COG3071 376 --EPEEAEQVRREAL 388 (400)
T ss_pred --ChHHHHHHHHHHH
Confidence 7777777776655
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.52 E-value=2.5e-11 Score=109.63 Aligned_cols=251 Identities=15% Similarity=0.171 Sum_probs=186.1
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-cccc-cchHHHHHHHHHhcCCHHHHHHHHHHHhhC-----
Q 015416 81 KMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKR-LAVN-LGSFNVMADGYCGQGRFKDAIEVFRKMGEY----- 153 (407)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 153 (407)
|.-..+...+...|...|+++.|+.++.+.++.-..... ..+. ....+.+...|...+++.+|..+|+++...
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 334456667899999999999999999998775100000 0002 224456888999999999999999998652
Q ss_pred C-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-
Q 015416 154 R-CSPD-TLSFNNLIDQLCKNGMLAEAEELYGEMSDK-----GVN-PD-EYTYGLLMDACFEVNRVDDGATYFRKMVDS- 223 (407)
Q Consensus 154 ~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 223 (407)
| ..|. ..+++.|..+|.+.|++++|..+++++.+. |.. |. ...++.++..|...+++++|..+++...+.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 2 1122 347888889999999999999998887541 222 22 335777888899999999999999887642
Q ss_pred --CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----c---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 224 --GLRPN----LAVYNRLVGKLVQVGMLDEAKSFFDIMVK-----K---LKMDDASYKFMMKALSDGGKLDEILEIVGGI 289 (407)
Q Consensus 224 --~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 289 (407)
-+.++ ..+++.|...|...|++++|.++++.++. . .......++.+...|.+.+++++|.++|.+.
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 11222 34899999999999999999999999987 1 2223557888999999999999999998876
Q ss_pred Hhc---C--CCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHH
Q 015416 290 LDD---G--GIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAE 331 (407)
Q Consensus 290 ~~~---~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 331 (407)
... . +.+....+|..|+.+|.+.|++++|.++.+.+...+..
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~ 482 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQ 482 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 543 1 12233448889999999999999999999998865543
No 64
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.50 E-value=2.1e-11 Score=110.03 Aligned_cols=245 Identities=17% Similarity=0.185 Sum_probs=184.0
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CCCCCCchh-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGE-----NSSVKMSAV-ANNSVLDALCNNGKFDEALKLFDRMKNEHNPP-- 117 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-- 117 (407)
-..+...|...|...|+++.|+.++.+++.. +. ..|... ..+.+...|...+++++|..+|+++...-...
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~-~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G 276 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGL-KHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG 276 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCc-cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 3456667999999999999999999998865 10 123333 34457889999999999999999987642100
Q ss_pred CccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhC-----CC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhC--
Q 015416 118 KRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY-----RC-SPDTL-SFNNLIDQLCKNGMLAEAEELYGEMSDK-- 188 (407)
Q Consensus 118 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~-- 188 (407)
....--..+++.|..+|.+.|++++|..+++...+. +. .|.+. .++.++..++..+++++|..+++...+.
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 001114457888999999999999998888776432 21 12222 4677888899999999999999987542
Q ss_pred -CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015416 189 -GVNPD----EYTYGLLMDACFEVNRVDDGATYFRKMVDS----GL--RPN-LAVYNRLVGKLVQVGMLDEAKSFFDIMV 256 (407)
Q Consensus 189 -~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~--~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 256 (407)
-+.++ ..+++.+...|...|++++|+++|++++.. +. .+. ...++.|...|.+.+++.+|.++|.+..
T Consensus 357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK 436 (508)
T ss_pred hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 12222 468999999999999999999999998742 11 222 3478889999999999999999998776
Q ss_pred h-------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 257 K-------KLKMDDASYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 257 ~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
. ..+....+|..|+..|...|+++.|+++.+.+..
T Consensus 437 ~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 437 DIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 6 2333456899999999999999999999988763
No 65
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.49 E-value=8.2e-10 Score=99.16 Aligned_cols=305 Identities=11% Similarity=0.054 Sum_probs=199.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcch---HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhH
Q 015416 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVV---YGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVAN 87 (407)
Q Consensus 11 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (407)
..|..+...+...|+.+.+...+....+. .+++... .......+...|++++|..++++++... |.+...+
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---P~~~~a~ 80 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQA---LAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY---PRDLLAL 80 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHH---hccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHH
Confidence 34677777777889999988888887775 3333332 3334556678899999999999999876 3344454
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 015416 88 NSVLDALCN----NGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFN 163 (407)
Q Consensus 88 ~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 163 (407)
.. ...+.. .+..+.+.+.+..... ..|. .......+...+...|++++|...+++..+.. +.+...+.
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~----~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~ 152 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPLWAP--ENPD----YWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVH 152 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhccCc--CCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHH
Confidence 42 223333 3445555555544111 1111 33455567778999999999999999999876 55677888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHH-H--HHH
Q 015416 164 NLIDQLCKNGMLAEAEELYGEMSDKGV-NPDE--YTYGLLMDACFEVNRVDDGATYFRKMVDSGL-RPNLAVY-N--RLV 236 (407)
Q Consensus 164 ~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~ 236 (407)
.+..++...|++++|..++++...... .|+. ..|..+...+...|++++|..+++++..... .+..... + .++
T Consensus 153 ~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l 232 (355)
T cd05804 153 AVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLL 232 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHH
Confidence 999999999999999999999887432 1232 3455788899999999999999999864322 1222211 1 333
Q ss_pred HHHHhcCCHHHHHHH--HHHH-HhcCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------CCCcHHHHHH
Q 015416 237 GKLVQVGMLDEAKSF--FDIM-VKKLK--MDDASYKFMMKALSDGGKLDEILEIVGGILDDGG-------IEFSEELQEF 304 (407)
Q Consensus 237 ~~~~~~g~~~~A~~~--~~~~-~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~~ 304 (407)
.-+...|....+.++ +... ....+ ...........++...|+.+.|..++..+..... ..........
T Consensus 233 ~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l 312 (355)
T cd05804 233 WRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLA 312 (355)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHH
Confidence 344445544333333 2111 11111 1122234567788889999999999998866321 1112233444
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 305 VKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 305 l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
.+.++.+.|+.++|.+.+.......
T Consensus 313 ~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 313 EALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4557789999999999999887654
No 66
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.49 E-value=7.9e-11 Score=92.42 Aligned_cols=201 Identities=15% Similarity=0.097 Sum_probs=122.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHH
Q 015416 49 VYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFN 128 (407)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (407)
+...|.-.|.+.|++..|..-++++++.+ |.+..+|..+...|.+.|+.+.|.+.|++.+...+. +..+.|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D---Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~------~GdVLN 107 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD---PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN------NGDVLN 107 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC------ccchhh
Confidence 34456666677777777777777777666 335566666666677777777777777776666544 455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 015416 129 VMADGYCGQGRFKDAIEVFRKMGEYRC-SPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEV 207 (407)
Q Consensus 129 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 207 (407)
.....+|..|++++|...|++....-. .-...+|..++-+..+.|+++.|...|++.++.. +-.+.+...+.....+.
T Consensus 108 NYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~ 186 (250)
T COG3063 108 NYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKA 186 (250)
T ss_pred hhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhc
Confidence 666666777777777777766655311 1123456666666666666666666666666542 11244555566666666
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 015416 208 NRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLK 260 (407)
Q Consensus 208 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 260 (407)
|++-.|..+++.....+. ++..+....|+.-...|+-+.+.++=..+...+|
T Consensus 187 ~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 187 GDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred ccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 666666666666655442 5555555555555666666665555555554433
No 67
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.49 E-value=6.9e-11 Score=92.75 Aligned_cols=199 Identities=14% Similarity=0.095 Sum_probs=152.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 015416 86 ANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNL 165 (407)
Q Consensus 86 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 165 (407)
+...|.-.|...|++..|..-+++.++.++. +..+|..+...|.+.|+.+.|.+.|++.++.. +.+-.+.|..
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs------~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNY 109 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS------YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNY 109 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhh
Confidence 4555677788888888888888888887655 56678888888888888888888888888765 5566778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 015416 166 IDQLCKNGMLAEAEELYGEMSDKGVNP-DEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244 (407)
Q Consensus 166 ~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 244 (407)
+.-+|..|++++|...|+++...-.-+ -..+|..+.-+..+.|+++.|...|++.++.. +-...+...+.......|+
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGD 188 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhccc
Confidence 888888888888888888887642222 24577788888888888888888888888753 2344567777788888888
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 245 LDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 245 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
+-.|..+++.......++..+....|+.-...|+.+.+-++=.++...
T Consensus 189 y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 189 YAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred chHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 888888888888766678888888888888888888777776666665
No 68
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=8e-10 Score=95.57 Aligned_cols=317 Identities=10% Similarity=0.065 Sum_probs=214.6
Q ss_pred CCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchh
Q 015416 6 FVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAV 85 (407)
Q Consensus 6 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 85 (407)
..|+...|++.|..=.+.+.++.|..+|+...- +.|++.+|-.....-.+.|+...|..+|+.+...-.+-..+..
T Consensus 170 w~P~eqaW~sfI~fElRykeieraR~IYerfV~----~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~ 245 (677)
T KOG1915|consen 170 WEPDEQAWLSFIKFELRYKEIERARSIYERFVL----VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEI 245 (677)
T ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe----ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHH
Confidence 578888899999988888889999999988875 4588888888888888888888888888887754211112223
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc--------------------------------------cccccchH
Q 015416 86 ANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKR--------------------------------------LAVNLGSF 127 (407)
Q Consensus 86 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~ 127 (407)
.+.+...-=..+..++.|.-+|.-.+..-+.... ...|-.+|
T Consensus 246 lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsW 325 (677)
T KOG1915|consen 246 LFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSW 325 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHH
Confidence 3444444334556666676666666554333210 00144455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH--HHHHHH--------HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 015416 128 NVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTL--SFNNLI--------DQLCKNGMLAEAEELYGEMSDKGVNPDEYTY 197 (407)
Q Consensus 128 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~--------~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 197 (407)
-..+..-...|+.+...++|++.+.. +||-.. .|.-.| -.=....+.+.+.++|+..++. ++....||
T Consensus 326 fdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtF 403 (677)
T KOG1915|consen 326 FDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTF 403 (677)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchH
Confidence 56666666677777777777777764 344322 111111 1112456777777777777763 44445555
Q ss_pred HHHHHHH----HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 015416 198 GLLMDAC----FEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKAL 273 (407)
Q Consensus 198 ~~l~~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 273 (407)
..+--.| .+..++..|.+++..++. .-|-..+|...|..-.+.++++.+.+++++.+.-.|.+..+|......-
T Consensus 404 aKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE 481 (677)
T KOG1915|consen 404 AKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELE 481 (677)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHH
Confidence 5444333 356777788888877764 4677778888888888888888888888888886667778888888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhH
Q 015416 274 SDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKA 330 (407)
Q Consensus 274 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 330 (407)
...|+.+.|..+|.-+++...+......+...++.-...|.++.|..+++++.....
T Consensus 482 ~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 482 TSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 888888888888888887654455555666777777778888888888888876553
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.3e-10 Score=98.56 Aligned_cols=270 Identities=11% Similarity=0.041 Sum_probs=216.3
Q ss_pred CCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchh
Q 015416 6 FVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAV 85 (407)
Q Consensus 6 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 85 (407)
++-|+.....+...+...|+.++|+..|++.... .+-+........-.+.+.|+++....+...+.... ..+..
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~---dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~---~~ta~ 301 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA---NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV---KYTAS 301 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC---ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh---hcchh
Confidence 4567778899999999999999999999998875 22233344444556678899998888888887654 34566
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 015416 86 ANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNL 165 (407)
Q Consensus 86 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 165 (407)
.|..-+......+++..|+.+-++.+...+. +...+-.-...+...|++++|.-.|+...... |-+..+|.-|
T Consensus 302 ~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r------~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL 374 (564)
T KOG1174|consen 302 HWFVHAQLLYDEKKFERALNFVEKCIDSEPR------NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGL 374 (564)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHhccCcc------cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHH
Confidence 6666677777889999999999999887544 55677777788999999999999999988764 5678899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHh-cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc
Q 015416 166 IDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLM-DACFE-VNRVDDGATYFRKMVDSGLRPNLA-VYNRLVGKLVQV 242 (407)
Q Consensus 166 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~-~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~ 242 (407)
+..|...|.+.+|.-+-+...+. ++.+..+...+. ..|.- ..--++|.++++..+. +.|+.. ..+.+...+...
T Consensus 375 ~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~E 451 (564)
T KOG1174|consen 375 FHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVE 451 (564)
T ss_pred HHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhh
Confidence 99999999999999888777654 445666666553 33332 2335789999999887 456644 778888999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 243 GMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 243 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
|..++++.++++.+. ..||....+.|++.+...+.+++|.+.|..++..
T Consensus 452 g~~~D~i~LLe~~L~-~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 452 GPTKDIIKLLEKHLI-IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred CccchHHHHHHHHHh-hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 999999999999988 4678888999999999999999999999999986
No 70
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.43 E-value=1.4e-09 Score=90.42 Aligned_cols=332 Identities=13% Similarity=0.097 Sum_probs=243.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchh-hHHHHHH
Q 015416 14 SYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAV-ANNSVLD 92 (407)
Q Consensus 14 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~l~~ 92 (407)
--|...+...|++..|+..|...++ +.|.+-.++..-...|...|+...|+.-+.+.++.. ||-. +...-..
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve---~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK----pDF~~ARiQRg~ 114 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVE---GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK----PDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHc---CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC----ccHHHHHHHhch
Confidence 3456677778999999999999988 544555566666778999999999999999999864 4432 2223446
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCcc-------ccc--cchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 015416 93 ALCNNGKFDEALKLFDRMKNEHNPPKRL-------AVN--LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFN 163 (407)
Q Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 163 (407)
.+.++|.++.|..-|+.++...+..... .+. .......+..+.-.|+...|+.+...+++.. +-|...|.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~ 193 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQ 193 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHH
Confidence 6889999999999999999886542210 000 1122233455677899999999999999865 67888899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HHHHH----
Q 015416 164 NLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLA----VYNRL---- 235 (407)
Q Consensus 164 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l---- 235 (407)
.-..+|...|.+..|+.=++...+.. ..+..++..+-..+...|+.+.++...++.++ +.||.. .|-.|
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHH
Confidence 99999999999999999888887653 34566777788889999999999999999988 456643 22221
Q ss_pred -----HHHHHhcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Q 015416 236 -----VGKLVQVGMLDEAKSFFDIMVKKLKM----DDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVK 306 (407)
Q Consensus 236 -----~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 306 (407)
+......++|.++..-.+...+..|. ....+..+-.++...|++.+|++...+++... +.+..++.--+
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d--~~dv~~l~dRA 348 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID--PDDVQVLCDRA 348 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC--chHHHHHHHHH
Confidence 12234567888888888888773332 23345666778888999999999999999852 45578888889
Q ss_pred HHHhhcCcHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 015416 307 GELSKEGREEEVVKLMEKKEREK---AEAKAREAEAAEAAKRSARAAIASLIPSK 358 (407)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 358 (407)
.+|.-...++.|+.-|++..+.. ............+...+.+...|-+||-+
T Consensus 349 eA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRDYYKILGVk 403 (504)
T KOG0624|consen 349 EAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKRDYYKILGVK 403 (504)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccchHHHHhhhc
Confidence 99999999999999999987543 22222222333445566677778777755
No 71
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.41 E-value=3e-10 Score=103.94 Aligned_cols=261 Identities=16% Similarity=0.137 Sum_probs=194.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHH
Q 015416 53 LMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMAD 132 (407)
Q Consensus 53 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (407)
....+...|++++|++.++.-... +..........+..+.+.|+.++|..+|..+++.+|. +..-|..+..
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~---I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd------n~~Yy~~L~~ 80 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ---ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD------NYDYYRGLEE 80 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------cHHHHHHHHH
Confidence 445667889999999999876554 3444566677889999999999999999999999865 5556777777
Q ss_pred HHHhcC-----CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015416 133 GYCGQG-----RFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLA-EAEELYGEMSDKGVNPDEYTYGLLMDACFE 206 (407)
Q Consensus 133 ~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 206 (407)
+..... +.+....+|+++...- |.......+.-.+.....+. .+..++..+...|++ .+|..+-..|..
T Consensus 81 ~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d 155 (517)
T PF12569_consen 81 ALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKD 155 (517)
T ss_pred HHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcC
Confidence 763332 5677788888887643 44444333333333323333 455677777888865 366777777765
Q ss_pred cCChHHHHHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 015416 207 VNRVDDGATYFRKMVDS----G----------LRPNL--AVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMM 270 (407)
Q Consensus 207 ~g~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 270 (407)
.....-..+++...... + -+|+. .++..+.+.|...|++++|+.++++.+...|..+..|..-+
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Ka 235 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKA 235 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 55555555555554421 1 13444 35577788999999999999999999997777899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 271 KALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 271 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
+.+.+.|++.+|.+.++.+...+ ..|.-+-+..+..+.|.|+.++|.+.+....+.+
T Consensus 236 rilKh~G~~~~Aa~~~~~Ar~LD--~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 236 RILKHAGDLKEAAEAMDEARELD--LADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCC--hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 99999999999999999999974 5666677778888999999999999999987765
No 72
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.37 E-value=1.3e-10 Score=102.76 Aligned_cols=258 Identities=16% Similarity=0.075 Sum_probs=199.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHH
Q 015416 53 LMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMAD 132 (407)
Q Consensus 53 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (407)
.+.-+.+.|++.+|.-.|+.+++.+ |-+..+|..|+......++-..|+..+++..+..+. +..+...|.-
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqd---P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~------NleaLmaLAV 361 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQD---PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT------NLEALMALAV 361 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhC---hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc------cHHHHHHHHH
Confidence 4555678899999999999999998 558999999999999999999999999999998765 7788999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHH
Q 015416 133 GYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNN-------LIDQLCKNGMLAEAEELYGEM-SDKGVNPDEYTYGLLMDAC 204 (407)
Q Consensus 133 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~g~~~~a~~~~~~~-~~~~~~p~~~~~~~l~~~~ 204 (407)
.|...|.-..|+++++..+.... |-...-.. .-..+.....+....++|-++ ...+..+|+.....|.-.|
T Consensus 362 SytNeg~q~~Al~~L~~Wi~~~p-~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 362 SYTNEGLQNQALKMLDKWIRNKP-KYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLY 440 (579)
T ss_pred HHhhhhhHHHHHHHHHHHHHhCc-cchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHH
Confidence 99999999999999999876431 11000000 001111222344455555555 4555557888899999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015416 205 FEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILE 284 (407)
Q Consensus 205 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 284 (407)
.-.|++++|...|+.++... +-|...||.|+-.++...+.++|+..|.++++..|--..+...|+.+|...|.+++|.+
T Consensus 441 ~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 441 NLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred hcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 99999999999999999843 33566999999999999999999999999999666667799999999999999999999
Q ss_pred HHHHHHhcC--------CCCCcHHHHHHHHHHHhhcCcHHHHHHH
Q 015416 285 IVGGILDDG--------GIEFSEELQEFVKGELSKEGREEEVVKL 321 (407)
Q Consensus 285 ~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 321 (407)
.|-.++... ...++..+|..|-.++.-.++.+-+...
T Consensus 520 hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 520 HLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 998877542 1122345777777777777777654443
No 73
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=3.4e-09 Score=86.46 Aligned_cols=279 Identities=11% Similarity=0.101 Sum_probs=165.0
Q ss_pred CCcCCCCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 015416 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSV 80 (407)
Q Consensus 1 M~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 80 (407)
|.-.|+....--+++.+..+.+..+++.|++++..-.++ .+.+....+.|+.+|....++..|-..|+++....
T Consensus 1 M~~~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er---~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--- 74 (459)
T KOG4340|consen 1 MAGSGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELER---SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--- 74 (459)
T ss_pred CCcccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---
Confidence 444565555555778888888999999999999888875 34477888999999999999999999999998754
Q ss_pred CCchhhHHH-HHHHHHhcCCHHHHHHHHHHHHhcCC--------------CCCcc------------ccccchHHHHHHH
Q 015416 81 KMSAVANNS-VLDALCNNGKFDEALKLFDRMKNEHN--------------PPKRL------------AVNLGSFNVMADG 133 (407)
Q Consensus 81 ~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~--------------~~~~~------------~~~~~~~~~l~~~ 133 (407)
|...-|.. -...+.+.+.+..|+++...|..... ..+.+ ..+..+.+...-.
T Consensus 75 -P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCl 153 (459)
T KOG4340|consen 75 -PELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCL 153 (459)
T ss_pred -hHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchhe
Confidence 33333333 34556677777778777766654200 00000 0022333444444
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-------------CH------
Q 015416 134 YCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNP-------------DE------ 194 (407)
Q Consensus 134 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-------------~~------ 194 (407)
..+.|+++.|.+-|+...+.+--.....|+.-+ +..+.|+++.|+++..+++++|++. |.
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt 232 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNT 232 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccch
Confidence 556666777776666666544333445555433 3344566667777666666665431 11
Q ss_pred ---------HHHHHHHHHHHhcCChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 015416 195 ---------YTYGLLMDACFEVNRVDDGATYFRKMV-DSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDA 264 (407)
Q Consensus 195 ---------~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 264 (407)
..++.-...+.+.++++.|.+.+..|- ......|+.|...+.-.= -.+++.+...-+.-+....|....
T Consensus 233 ~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~E 311 (459)
T KOG4340|consen 233 LVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPE 311 (459)
T ss_pred HHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChH
Confidence 112222223345566666666555554 111223444444433221 123444444444444444555667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Q 015416 265 SYKFMMKALSDGGKLDEILEIVGG 288 (407)
Q Consensus 265 ~~~~l~~~~~~~g~~~~A~~~~~~ 288 (407)
||..++-.||+..-++-|.+++.+
T Consensus 312 TFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 312 TFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHHhhhHHHhHHHHHHhh
Confidence 788888888887777777777654
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.35 E-value=8.9e-09 Score=92.47 Aligned_cols=318 Identities=11% Similarity=-0.007 Sum_probs=197.7
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCch-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccccc
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSA-VANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (407)
.+..|..+...+...|+.+.+...+.......+. .++. .........+...|++++|.+.++++.+..|. +.
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~------~~ 77 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAA-RATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR------DL 77 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------cH
Confidence 4556777888888889999988888887766532 1222 22233345567889999999999999987544 33
Q ss_pred chHHH---HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015416 125 GSFNV---MADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLM 201 (407)
Q Consensus 125 ~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 201 (407)
..+.. +.......+....+.+.+..... ..+........+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la 155 (355)
T cd05804 78 LALKLHLGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVA 155 (355)
T ss_pred HHHHHhHHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHH
Confidence 34332 12222234555556665554222 223334455677788999999999999999999863 34567788899
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCHHHH-H--HHHHHH
Q 015416 202 DACFEVNRVDDGATYFRKMVDSGL-RPNL--AVYNRLVGKLVQVGMLDEAKSFFDIMVKKLK--MDDASY-K--FMMKAL 273 (407)
Q Consensus 202 ~~~~~~g~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~-~--~l~~~~ 273 (407)
.+|...|++++|..++++...... .|+. ..|..+...+...|++++|..++++.....+ +..... . .++.-+
T Consensus 156 ~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 235 (355)
T cd05804 156 HVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRL 235 (355)
T ss_pred HHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHH
Confidence 999999999999999999887432 1232 3466788999999999999999999875322 222211 1 233333
Q ss_pred HhcCCHHHHHHH--H-HHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 015416 274 SDGGKLDEILEI--V-GGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAEAKAREAEAAEAAKRSARAA 350 (407)
Q Consensus 274 ~~~g~~~~A~~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (407)
...|....+.++ + .........+.........+.++...|+.++|..+++.+......... .........
T Consensus 236 ~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~-------~~~~~~~~~ 308 (355)
T cd05804 236 ELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADD-------NKQPARDVG 308 (355)
T ss_pred HhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCc-------hhhhHHhhh
Confidence 444543333332 1 111111000111222234667788999999999999998654432000 001122233
Q ss_pred HHhhcCCCcCCCccccccccccChhhHhhHHHHhcCcc
Q 015416 351 IASLIPSKFGDKVGGTEMADNANANEAASVAEAQAGKE 388 (407)
Q Consensus 351 ~~~~l~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~~~~ 388 (407)
+....+-.+..++ ++.+|+.+...+...-
T Consensus 309 ~~~l~A~~~~~~g---------~~~~A~~~L~~al~~a 337 (355)
T cd05804 309 LPLAEALYAFAEG---------NYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHcC---------CHHHHHHHHHHHHHHH
Confidence 3334444455666 8888888877766544
No 75
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.33 E-value=8.4e-09 Score=94.51 Aligned_cols=358 Identities=16% Similarity=0.107 Sum_probs=211.5
Q ss_pred CCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchh
Q 015416 6 FVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAV 85 (407)
Q Consensus 6 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 85 (407)
+.-|+..|..|.-+..+.|+++.+.+.|++... +..-....|+.+...|...|.-..|+.+++......+ -+++..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~---~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~-~ps~~s 394 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALP---FSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSE-QPSDIS 394 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---hhhhhHHHHHHHHHHHHHhccchHHHHHHHhhccccc-CCCcch
Confidence 345788899999999999999999999999887 4555778899999999999999999999998876542 133445
Q ss_pred hHHHHHHHHHh-cCCHHHHHHHHHHHHhcC-CCCCccccccchHHHHHHHHHhcC-----------CHHHHHHHHHHHhh
Q 015416 86 ANNSVLDALCN-NGKFDEALKLFDRMKNEH-NPPKRLAVNLGSFNVMADGYCGQG-----------RFKDAIEVFRKMGE 152 (407)
Q Consensus 86 ~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~ 152 (407)
.+......|.. .+.+++++.+-.++.... ...+.+ ....|..++-+|...- ...++++.+++..+
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l--~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHL--KPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhh--hhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 55555555544 477777777777766521 111111 1222333333332111 12333344444433
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCC------
Q 015416 153 YRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVD-SGL------ 225 (407)
Q Consensus 153 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~------ 225 (407)
.+ +.|..+...+.--|+..++...|.+..++..+.+-.-+...|..+.-.+...+++.+|+.+.+...+ .|.
T Consensus 473 ~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~ 551 (799)
T KOG4162|consen 473 FD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD 551 (799)
T ss_pred cC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch
Confidence 32 1222222222333333444444444444444432223333333333333333333333333332221 000
Q ss_pred --------------------------------------------------------------------------------
Q 015416 226 -------------------------------------------------------------------------------- 225 (407)
Q Consensus 226 -------------------------------------------------------------------------------- 225 (407)
T Consensus 552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~ 631 (799)
T KOG4162|consen 552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSEL 631 (799)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccc
Confidence
Q ss_pred -------C--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015416 226 -------R--PN------LAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGIL 290 (407)
Q Consensus 226 -------~--~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 290 (407)
. |+ ...|......+...++.++|...+.+.....+.....|...+..+...|.+.+|.+.|..++
T Consensus 632 ~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 632 KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 0 01 12344455566667777777777777777666677777777777777777888888777777
Q ss_pred hcCCCCCcHHHHHHHHHHHhhcCcHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCcccccc
Q 015416 291 DDGGIEFSEELQEFVKGELSKEGREEEVVK--LMEKKEREKAEAKAREAEAAEAAKRSARAAIASLIPSKFGDKVGGTEM 368 (407)
Q Consensus 291 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 368 (407)
..+ |........++.++.+.|+..-|.. ++..+.+ .+|.....++.+|.++...|
T Consensus 712 ~ld--P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr----------------~dp~n~eaW~~LG~v~k~~G----- 768 (799)
T KOG4162|consen 712 ALD--PDHVPSMTALAELLLELGSPRLAEKRSLLSDALR----------------LDPLNHEAWYYLGEVFKKLG----- 768 (799)
T ss_pred hcC--CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh----------------hCCCCHHHHHHHHHHHHHcc-----
Confidence 653 4445566777777777776555555 4444433 44777788888999988888
Q ss_pred ccccChhhHhhHHHHhcCcccchhhhhhhhhhc
Q 015416 369 ADNANANEAASVAEAQAGKEVNLEEATAVESAS 401 (407)
Q Consensus 369 ~~~~~~~ea~~~~~~~~~~~~~~~~~~~~~~~~ 401 (407)
+..+|......+.. +++..++.++|
T Consensus 769 ----d~~~Aaecf~aa~q----Le~S~PV~pFs 793 (799)
T KOG4162|consen 769 ----DSKQAAECFQAALQ----LEESNPVLPFS 793 (799)
T ss_pred ----chHHHHHHHHHHHh----hccCCCccccc
Confidence 77788888776654 44556666665
No 76
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.33 E-value=4.1e-10 Score=99.69 Aligned_cols=255 Identities=16% Similarity=0.150 Sum_probs=194.7
Q ss_pred HHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhc
Q 015416 18 LGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNN 97 (407)
Q Consensus 18 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 97 (407)
..+.+.|++.+|.-+|+..++. .|-+...|..|+......++-..|+..+.++++.+ |.|..+...|.-.|...
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkq---dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld---P~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQ---DPQHAEAWQKLGITQAENENEQNAISALRRCLELD---PTNLEALMALAVSYTNE 366 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhh---ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC---CccHHHHHHHHHHHhhh
Confidence 3457899999999999999996 45589999999999999999999999999999988 55889999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcccc---ccchHHHHHHHHHhcCCHHHHHHHHHHHh-hCCCCCCHHHHHHHHHHHHHcC
Q 015416 98 GKFDEALKLFDRMKNEHNPPKRLAV---NLGSFNVMADGYCGQGRFKDAIEVFRKMG-EYRCSPDTLSFNNLIDQLCKNG 173 (407)
Q Consensus 98 ~~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g 173 (407)
|.-..|.+.|+.-+...++.....+ +...-.. ..+.....+....++|-++. ..+..+|..+...|.-.|.-.|
T Consensus 367 g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred hhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 9999999999988765533210000 0000000 11122223444555555553 4444578889999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHH
Q 015416 174 MLAEAEELYGEMSDKGVNP-DEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLA-VYNRLVGKLVQVGMLDEAKSF 251 (407)
Q Consensus 174 ~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~ 251 (407)
.+++|+..|+.++.. +| |...|+.|..++....+.++|+..|.++++ +.|+.+ +...|+-+|...|.+.+|.+.
T Consensus 445 efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred HHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 999999999999984 45 578899999999999999999999999998 677755 888899999999999999999
Q ss_pred HHHHHhc----------CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015416 252 FDIMVKK----------LKMDDASYKFMMKALSDGGKLDEILE 284 (407)
Q Consensus 252 ~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~ 284 (407)
|-.++.. ..++...|..|=.++.-.++.|-+..
T Consensus 521 lL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 521 LLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 9888761 11123456655556666666654433
No 77
>PF13041 PPR_2: PPR repeat family
Probab=99.30 E-value=5.2e-12 Score=77.09 Aligned_cols=50 Identities=30% Similarity=0.661 Sum_probs=41.6
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHH
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFM 59 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 59 (407)
||..+||++|++|++.|++++|.++|++|.+. |++||..+|+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~--g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKR--GIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHcC
Confidence 78888888888888888888888888888887 888888888888887753
No 78
>PF13041 PPR_2: PPR repeat family
Probab=99.30 E-value=1e-11 Score=75.84 Aligned_cols=49 Identities=41% Similarity=0.876 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015416 157 PDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACF 205 (407)
Q Consensus 157 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 205 (407)
||..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555566666666666666666666666665556666666666555554
No 79
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.29 E-value=6.5e-10 Score=102.97 Aligned_cols=253 Identities=11% Similarity=0.123 Sum_probs=161.5
Q ss_pred CCcCCCCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 015416 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSV 80 (407)
Q Consensus 1 M~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 80 (407)
|...|+.||-+||..+|.-|+..|+.+.|- +|.-|.-+ ..+.+...++.++....+.++.+.+.
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~k--sLpv~e~vf~~lv~sh~~And~Enpk------------- 79 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK--SLPVREGVFRGLVASHKEANDAENPK------------- 79 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcc--cccccchhHHHHHhcccccccccCCC-------------
Confidence 356799999999999999999999999998 99999887 77788889999999888888766554
Q ss_pred CCchhhHHHHHHHHHhcCCHHH---HHHHHHHHHh----cCCCCCcc--------cc-ccchHHHHHHHHHhcCCHHHHH
Q 015416 81 KMSAVANNSVLDALCNNGKFDE---ALKLFDRMKN----EHNPPKRL--------AV-NLGSFNVMADGYCGQGRFKDAI 144 (407)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~----~~~~~~~~--------~~-~~~~~~~l~~~~~~~g~~~~A~ 144 (407)
.|...+|..|..+|...|+... +.+.+..+.. .|...... .| ....-...+....-.|-++.++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 5568899999999999998654 2222222211 11110000 00 0001122333344445555555
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 015416 145 EVFRKMGEYRCSPDTLSFNNLIDQLCKNGM-LAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDS 223 (407)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 223 (407)
+++..+...... ..... .++-+..... +++-..+.....+ .|+..+|..++.+-...|+.+.|..++..|.+.
T Consensus 160 kll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 160 KLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 555554332110 11111 2333332222 2222222222222 577888888888888888888888888888888
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCC
Q 015416 224 GLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK-KLKMDDASYKFMMKALSDGGK 278 (407)
Q Consensus 224 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 278 (407)
|++.+..-|..|+.+ .++..-+..++..|.. ++.|+..|+...+..+...|.
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 887777766666655 6677777777777776 788888888777777776444
No 80
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.28 E-value=4.2e-08 Score=88.37 Aligned_cols=97 Identities=14% Similarity=0.149 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHh
Q 015416 231 VYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELS 310 (407)
Q Consensus 231 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 310 (407)
++..+++.|-..|+++.|..+++......|.-+..|..-.+.+.+.|++++|..++.++.+.+ .++.-+-..-+.-..
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD--~aDR~INsKcAKYmL 450 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD--TADRAINSKCAKYML 450 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc--chhHHHHHHHHHHHH
Confidence 334566667777777777777777777555555666677777777777777777777777753 455555545566666
Q ss_pred hcCcHHHHHHHHHHHHHhh
Q 015416 311 KEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 311 ~~g~~~~A~~~~~~~~~~~ 329 (407)
++.+.++|.++..+..+.+
T Consensus 451 rAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 451 RANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HccccHHHHHHHHHhhhcc
Confidence 7777777777666655444
No 81
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.26 E-value=1.3e-09 Score=93.18 Aligned_cols=252 Identities=14% Similarity=0.085 Sum_probs=144.2
Q ss_pred HHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhc
Q 015416 18 LGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNN 97 (407)
Q Consensus 18 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 97 (407)
+.+.-.|++..++.-.+ .... ....+......+.+++...|+++.++.- .... -+|.......+...+...
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~--~~~~~~e~~~~~~Rs~iAlg~~~~vl~e---i~~~---~~~~l~av~~la~y~~~~ 79 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSF--SPENKLERDFYQYRSYIALGQYDSVLSE---IKKS---SSPELQAVRLLAEYLSSP 79 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTS--TCHHHHHHHHHHHHHHHHTT-HHHHHHH---S-TT---SSCCCHHHHHHHHHHCTS
T ss_pred HHHHHhhhHHHHHHHhh-ccCC--CchhHHHHHHHHHHHHHHcCChhHHHHH---hccC---CChhHHHHHHHHHHHhCc
Confidence 44455677777775555 2221 2122344455667777777777654432 2222 144455554444433333
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 015416 98 GKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAE 177 (407)
Q Consensus 98 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 177 (407)
++-+.++.-+.........+. +.........++...|++++|++++... .+.......+.+|.+.++++.
T Consensus 80 ~~~e~~l~~l~~~~~~~~~~~----~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dl 149 (290)
T PF04733_consen 80 SDKESALEELKELLADQAGES----NEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDL 149 (290)
T ss_dssp TTHHCHHHHHHHCCCTS---C----HHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHH
T ss_pred cchHHHHHHHHHHHHhccccc----cHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHH
Confidence 444444444444332221110 2223333445566678888777766542 356666677777888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015416 178 AEELYGEMSDKGVNPDEYTYGLLMDACFE----VNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFD 253 (407)
Q Consensus 178 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 253 (407)
|.+.++.|.+. ..| .+...+..++.. ...+.+|..+|+++.+. ..+++.+.+.++.++...|++++|..++.
T Consensus 150 A~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~ 225 (290)
T PF04733_consen 150 AEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLE 225 (290)
T ss_dssp HHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 88888887764 223 334445444432 23577888888887653 45677777777778888888888888888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhc
Q 015416 254 IMVKKLKMDDASYKFMMKALSDGGKL-DEILEIVGGILDD 292 (407)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 292 (407)
+.....+-++.++..++.+....|+. +.+.+++.++...
T Consensus 226 ~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 226 EALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 77776666777777777777777776 5566777777664
No 82
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.22 E-value=5.8e-07 Score=81.20 Aligned_cols=308 Identities=12% Similarity=0.133 Sum_probs=206.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcC----------------------CHHHHHH
Q 015416 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKG----------------------MEEEAME 68 (407)
Q Consensus 11 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------------~~~~A~~ 68 (407)
..|.+|.+.|.+.|.+++|.++|++.... ..++.-|..+.++|++-. +++-.+.
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~----v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a 324 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQT----VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMA 324 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh----heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHH
Confidence 46899999999999999999999998875 224445555555554311 2333444
Q ss_pred HHHHHHhCCCC---------CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc-ccccchHHHHHHHHHhcC
Q 015416 69 CYNEAVGENSS---------VKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL-AVNLGSFNVMADGYCGQG 138 (407)
Q Consensus 69 ~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 138 (407)
-|+.+....|- -+.+...|..-.. ...|+..+-...|.++++. +.|... ..-...|..+...|-..|
T Consensus 325 ~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~ 401 (835)
T KOG2047|consen 325 RFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNG 401 (835)
T ss_pred HHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcC
Confidence 55555443321 1334444444333 3356777888888887764 222211 112346888999999999
Q ss_pred CHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC----------C-------CHHHHH
Q 015416 139 RFKDAIEVFRKMGEYRCSPD---TLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVN----------P-------DEYTYG 198 (407)
Q Consensus 139 ~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----------p-------~~~~~~ 198 (407)
+++.|..+|++..+...+.- ..+|......=.+..+++.|+++++.+...--. | +...|.
T Consensus 402 ~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs 481 (835)
T KOG2047|consen 402 DLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWS 481 (835)
T ss_pred cHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHH
Confidence 99999999999987643222 235666666667788999999999887642111 1 223455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHh-
Q 015416 199 LLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMD--DASYKFMMKALSD- 275 (407)
Q Consensus 199 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~- 275 (407)
..+..--..|-++....+|+++++..+. ++.+....+..+-.+.-++++.+++++-+..+++. ...|+..+.-+.+
T Consensus 482 ~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~r 560 (835)
T KOG2047|consen 482 MYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKR 560 (835)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHH
Confidence 5566666778899999999999986543 55555556666677778999999999988854443 4466666665543
Q ss_pred --cCCHHHHHHHHHHHHhcCCCCCcHH--HHHHHHHHHhhcCcHHHHHHHHHHHHHh
Q 015416 276 --GGKLDEILEIVGGILDDGGIEFSEE--LQEFVKGELSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 276 --~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 328 (407)
.-..+.|..+|+++++. .||... +|...+..-.+.|-...|+.++++....
T Consensus 561 ygg~klEraRdLFEqaL~~--Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 561 YGGTKLERARDLFEQALDG--CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred hcCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 45789999999999984 455443 3333444445668888999999886543
No 83
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.20 E-value=7.2e-09 Score=88.57 Aligned_cols=252 Identities=13% Similarity=0.119 Sum_probs=170.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHH
Q 015416 55 KGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGY 134 (407)
Q Consensus 55 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 134 (407)
+-+.-.|++..++.-.+ ..... ..........+.+++...|+++.++. ++.... .| .......+...+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~--~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~-----~l~av~~la~y~ 76 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFS--PENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SP-----ELQAVRLLAEYL 76 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTST--CHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SC-----CCHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCC--chhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-Ch-----hHHHHHHHHHHH
Confidence 44556799999997766 32222 13344555667889999999876543 332222 22 555665565555
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 015416 135 CGQGRFKDAIEVFRKMGEYRCSPDTLSF-NNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDG 213 (407)
Q Consensus 135 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 213 (407)
...++-+.++.-+++.......++..++ ......+...|++++|++++... .+.......+..|.+.++++.|
T Consensus 77 ~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA 150 (290)
T PF04733_consen 77 SSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLA 150 (290)
T ss_dssp CTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHH
T ss_pred hCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHH
Confidence 5445666676666665544433233333 33345566789999999887642 3567777889999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 214 ATYFRKMVDSGLRPNLAVYNRLVGKLVQ----VGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGI 289 (407)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 289 (407)
.+.++.|.+. ..|. +...|+.++.. .+.+.+|..+|+++....++++.+.+.++.++...|++++|.+++.++
T Consensus 151 ~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~a 227 (290)
T PF04733_consen 151 EKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEA 227 (290)
T ss_dssp HHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999874 3443 34445554433 346999999999999888889999999999999999999999999999
Q ss_pred HhcCCCCCcHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHhh
Q 015416 290 LDDGGIEFSEELQEFVKGELSKEGRE-EEVVKLMEKKEREK 329 (407)
Q Consensus 290 ~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~ 329 (407)
...+ +-++.+...++-+....|+. +.+.+++.++....
T Consensus 228 l~~~--~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 228 LEKD--PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp CCC---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred HHhc--cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 8764 56667777788888888888 66778888877543
No 84
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=3.7e-08 Score=86.86 Aligned_cols=92 Identities=11% Similarity=-0.003 Sum_probs=63.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcH
Q 015416 236 VGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGRE 315 (407)
Q Consensus 236 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 315 (407)
+..+.+.|++..|+..|.+++...|.|...|....-+|.+.|.+..|++-.+..++.+ ++....|..-+.++.-..++
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~--p~~~kgy~RKg~al~~mk~y 442 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD--PNFIKAYLRKGAALRAMKEY 442 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777667777777777777777777777777777777653 44555666666666667777
Q ss_pred HHHHHHHHHHHHhh
Q 015416 316 EEVVKLMEKKEREK 329 (407)
Q Consensus 316 ~~A~~~~~~~~~~~ 329 (407)
++|.+.|++..+..
T Consensus 443 dkAleay~eale~d 456 (539)
T KOG0548|consen 443 DKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHhcC
Confidence 77777777666544
No 85
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=7.8e-07 Score=77.56 Aligned_cols=299 Identities=13% Similarity=0.042 Sum_probs=207.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHH
Q 015416 15 YLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDAL 94 (407)
Q Consensus 15 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (407)
-.+.+=-..|+...|.++|+...+ -.|+...|.+.+..-.+-..++.|..+|++.+- +.|++.+|....+.=
T Consensus 146 KY~ymEE~LgNi~gaRqiferW~~----w~P~eqaW~sfI~fElRykeieraR~IYerfV~----~HP~v~~wikyarFE 217 (677)
T KOG1915|consen 146 KYIYMEEMLGNIAGARQIFERWME----WEPDEQAWLSFIKFELRYKEIERARSIYERFVL----VHPKVSNWIKYARFE 217 (677)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe----ecccHHHHHHHHHHH
Confidence 334444456788888888887765 467888888888888888888888888888875 356778888888777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhC---------------------
Q 015416 95 CNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY--------------------- 153 (407)
Q Consensus 95 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------------- 153 (407)
.+.|+...|.++|..+.+.-..... +...+.++...=.++..++.|.-+|.-.+..
T Consensus 218 ~k~g~~~~aR~VyerAie~~~~d~~---~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfG 294 (677)
T KOG1915|consen 218 EKHGNVALARSVYERAIEFLGDDEE---AEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFG 294 (677)
T ss_pred HhcCcHHHHHHHHHHHHHHhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhc
Confidence 8888888888888877654221100 2223444433334444455544444433221
Q ss_pred ----------------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHH
Q 015416 154 ----------------------RCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDE-------YTYGLLMDAC 204 (407)
Q Consensus 154 ----------------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-------~~~~~l~~~~ 204 (407)
..+-|-.+|-..+..-...|+.+...++|++++.. ++|-. ..|..+=-+|
T Consensus 295 d~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYal 373 (677)
T KOG1915|consen 295 DKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYAL 373 (677)
T ss_pred chhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHH
Confidence 11345556777777777788999999999998875 55532 1222221222
Q ss_pred ---HhcCChHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 015416 205 ---FEVNRVDDGATYFRKMVDSGLRPNLAVYN----RLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGG 277 (407)
Q Consensus 205 ---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 277 (407)
....+.+.+.++|+..++. ++....||. ...+...++.++..|.+++...+. ..|-..+|...|..-.+.+
T Consensus 374 yeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG-~cPK~KlFk~YIelElqL~ 451 (677)
T KOG1915|consen 374 YEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG-KCPKDKLFKGYIELELQLR 451 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc-cCCchhHHHHHHHHHHHHh
Confidence 3467888899999998883 333334444 344445578899999999988876 5677788888999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 278 KLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 278 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
+++....+|++.+.-. |-+-.++...+..-...|+.+.|..+|+-.....
T Consensus 452 efDRcRkLYEkfle~~--Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 452 EFDRCRKLYEKFLEFS--PENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred hHHHHHHHHHHHHhcC--hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 9999999999999852 5566688888888888999999999999877544
No 86
>PLN02789 farnesyltranstransferase
Probab=99.17 E-value=1e-07 Score=82.59 Aligned_cols=204 Identities=11% Similarity=0.019 Sum_probs=89.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcC
Q 015416 60 KGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNG-KFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQG 138 (407)
Q Consensus 60 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 138 (407)
.+..++|+.++.+++..+ |-+..+|+.-..++...| ++++++..++++.+..++ +..+|+....++.+.|
T Consensus 50 ~e~serAL~lt~~aI~ln---P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk------nyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 50 DERSPRALDLTADVIRLN---PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK------NYQIWHHRRWLAEKLG 120 (320)
T ss_pred CCCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc------chHHhHHHHHHHHHcC
Confidence 344455555555555443 223334444434444444 345555555555544333 3334444433333444
Q ss_pred CH--HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CC----
Q 015416 139 RF--KDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEV---NR---- 209 (407)
Q Consensus 139 ~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~---- 209 (407)
+. ++++.+++++++.. +-+..+|+...-++...|+++++++.++++++.+.. +...|+....++.+. |.
T Consensus 121 ~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 121 PDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred chhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccccc
Confidence 32 34444554554443 334445555555555555555555555555543322 333333333333222 11
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 015416 210 VDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQV----GMLDEAKSFFDIMVKKLKMDDASYKFMMKALSD 275 (407)
Q Consensus 210 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 275 (407)
.+....+..+++... +-|...|+.+...+... ++..+|...+.+.....+.+......|+..|+.
T Consensus 199 ~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 199 RDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 123444444444422 22334555555554442 223445555555444334445555555555554
No 87
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.15 E-value=8.1e-09 Score=94.09 Aligned_cols=225 Identities=16% Similarity=0.080 Sum_probs=159.2
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 015416 80 VKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDT 159 (407)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 159 (407)
++|-...-..+...+.+.|-...|..+|++.. .|..++.+|...|+..+|..+..+.++. +|+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle--------------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~ 457 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE--------------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDP 457 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH--------------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcc
Confidence 34444455667788888898999998888764 5677788899999888888888887773 5888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 015416 160 LSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKL 239 (407)
Q Consensus 160 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 239 (407)
..|..+++......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|..++.+.
T Consensus 458 ~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~A 529 (777)
T KOG1128|consen 458 RLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAA 529 (777)
T ss_pred hhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHH
Confidence 88888888777777777777777654321 11222233334677777777777777643 33556777777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHH
Q 015416 240 VQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVV 319 (407)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 319 (407)
.+.+++..|.+.|.......|.+...|+++..+|.+.|+-.+|...+.++.+-+ ..+-.++...+-...+.|.+++|+
T Consensus 530 Lqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn--~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 530 LQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN--YQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC--CCCCeeeechhhhhhhcccHHHHH
Confidence 788888888888888777777777788888888888888888888888777754 333334444455566778888888
Q ss_pred HHHHHHHHhhH
Q 015416 320 KLMEKKEREKA 330 (407)
Q Consensus 320 ~~~~~~~~~~~ 330 (407)
+.+.++...+.
T Consensus 608 ~A~~rll~~~~ 618 (777)
T KOG1128|consen 608 KAYHRLLDLRK 618 (777)
T ss_pred HHHHHHHHhhh
Confidence 87777765443
No 88
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.15 E-value=1.1e-08 Score=85.99 Aligned_cols=191 Identities=12% Similarity=0.012 Sum_probs=129.3
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHH
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANN 88 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
....+..+...+...|+++.|...|+.+....|..+....++..++.++...|++++|+..|+++++..|+-+.-..++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 45567777888889999999999999988853221112246788889999999999999999999887654222223566
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 015416 89 SVLDALCNN--------GKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTL 160 (407)
Q Consensus 89 ~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 160 (407)
.+..++... |+++.|.+.|+.+....+.. ...+..+..... .... . ..
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~a~~~~~~----~~~~------~--------~~ 167 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS------EYAPDAKKRMDY----LRNR------L--------AG 167 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC------hhHHHHHHHHHH----HHHH------H--------HH
Confidence 666666655 77888999999988776542 222222211100 0000 0 01
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 015416 161 SFNNLIDQLCKNGMLAEAEELYGEMSDKGV--NPDEYTYGLLMDACFEVNRVDDGATYFRKMVDS 223 (407)
Q Consensus 161 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 223 (407)
....+...|.+.|++.+|+..++.+.+... +.....+..++.++...|++++|..+++.+...
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 122466678888999999998888876421 123567888888899999999999888887753
No 89
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.14 E-value=2.4e-07 Score=93.87 Aligned_cols=316 Identities=14% Similarity=0.074 Sum_probs=206.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHhhCCcc----CC--cchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC--chh
Q 015416 14 SYLMLGFVRDGDSDGVFRLFEELKEKLGGVV----SD--GVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKM--SAV 85 (407)
Q Consensus 14 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~ 85 (407)
......+...|++++|..++........... +. ......+...+...|+++.|...+++.....+...+ ...
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 3444555678999999999988766421111 11 122233445667889999999999998864311111 123
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC--C-C
Q 015416 86 ANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY----RCS--P-D 158 (407)
Q Consensus 86 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~ 158 (407)
..+.+...+...|+++.|...+++................++..+...+...|+++.|...+++.... +.. + .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 44566777888999999999999887543221111112235566778889999999999998876542 211 1 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHH--
Q 015416 159 TLSFNNLIDQLCKNGMLAEAEELYGEMSDK--GVNP--DEYTYGLLMDACFEVNRVDDGATYFRKMVDS--GLRPNLA-- 230 (407)
Q Consensus 159 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~-- 230 (407)
...+..+...+...|++++|...+.+.... ...+ ....+..+...+...|+++.|...+..+... .......
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 234556677788889999999999887642 1112 2344555677788999999999999888642 1111111
Q ss_pred HH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCC-cHH
Q 015416 231 VY--NRLVGKLVQVGMLDEAKSFFDIMVKKLKMDD----ASYKFMMKALSDGGKLDEILEIVGGILDD---GGIEF-SEE 300 (407)
Q Consensus 231 ~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~-~~~ 300 (407)
.. ...+..+...|+.+.|..++........... ..+..+..++...|++++|..+++++... .+... ...
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 11 1122445568899999999877654211111 12456778889999999999999988764 22222 223
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 301 LQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 301 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
....++.++.+.|+.++|...+.+.....
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 56677889999999999999999987543
No 90
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.13 E-value=2.8e-08 Score=90.69 Aligned_cols=237 Identities=13% Similarity=0.145 Sum_probs=152.3
Q ss_pred CCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchh
Q 015416 6 FVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAV 85 (407)
Q Consensus 6 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 85 (407)
++|=...-..+...+...|-...|+.+|+++.. |..++.+|...|+..+|..+..+-++ . +|+..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erlem-----------w~~vi~CY~~lg~~~kaeei~~q~le-k---~~d~~ 458 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLEM-----------WDPVILCYLLLGQHGKAEEINRQELE-K---DPDPR 458 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHHH-----------HHHHHHHHHHhcccchHHHHHHHHhc-C---CCcch
Confidence 344444445566667777777777777766543 55667777777777777777776665 2 55666
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 015416 86 ANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNL 165 (407)
Q Consensus 86 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 165 (407)
.|..+++......-+++|.++++..... +-..+.....+.++++++.+.|+.-.+.. +-...+|..+
T Consensus 459 lyc~LGDv~~d~s~yEkawElsn~~sar------------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~ 525 (777)
T KOG1128|consen 459 LYCLLGDVLHDPSLYEKAWELSNYISAR------------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGL 525 (777)
T ss_pred hHHHhhhhccChHHHHHHHHHhhhhhHH------------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhc
Confidence 7777776666666666676666654332 22223333444677777777777766654 4556677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 015416 166 IDQLCKNGMLAEAEELYGEMSDKGVNPD-EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244 (407)
Q Consensus 166 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 244 (407)
..+..+.+++..|.+.|..... ..|+ ...|+.+-.+|.+.++..+|...+.+..+.+ .-+..+|.+.+......|.
T Consensus 526 G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge 602 (777)
T KOG1128|consen 526 GCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGE 602 (777)
T ss_pred cHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhccc
Confidence 7777777777777777777766 3444 5567777777777777777777777777765 4455667677777777777
Q ss_pred HHHHHHHHHHHHh--cCCCCHHHHHHHHHHH
Q 015416 245 LDEAKSFFDIMVK--KLKMDDASYKFMMKAL 273 (407)
Q Consensus 245 ~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~ 273 (407)
+++|++.+.++.. ....+..+...++...
T Consensus 603 ~eda~~A~~rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 603 FEDAIKAYHRLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHHHHHHHHHHHHhhhhcccchhhHHHHHHH
Confidence 7777777777766 2222444444444433
No 91
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.12 E-value=8.4e-08 Score=93.41 Aligned_cols=224 Identities=12% Similarity=0.144 Sum_probs=179.5
Q ss_pred HHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHH
Q 015416 67 MECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEV 146 (407)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 146 (407)
.+-|++.+... |-+...|...+......++.+.|.+++++++.. +.+..-.--...|.++++.-..-|.-+...++
T Consensus 1444 aeDferlvrss---PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1444 AEDFERLVRSS---PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred HHHHHHHHhcC---CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 34455555554 446778889999999999999999999998764 22211111344788888888888888889999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 015416 147 FRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLR 226 (407)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 226 (407)
|+++.+.. .....|..|...|.+.+.+++|.++|+.|.+. +......|...+..+.+.++-+.|..++.++++. ++
T Consensus 1520 FeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-lP 1595 (1710)
T KOG1070|consen 1520 FERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS-LP 1595 (1710)
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-cc
Confidence 99998853 34567889999999999999999999999875 4456788999999999999999999999999874 22
Q ss_pred C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcH
Q 015416 227 P--NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSE 299 (407)
Q Consensus 227 ~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 299 (407)
- ........++.-.+.|+.+.+..+|+..+...|.-...|+.+++.-.++|+.+.+..+|++++... +.|..
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~-l~~kk 1669 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK-LSIKK 1669 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC-CChhH
Confidence 2 345677778888899999999999999999888888999999999999999999999999999873 44433
No 92
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=8.9e-07 Score=79.24 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=71.2
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHH
Q 015416 16 LMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALC 95 (407)
Q Consensus 16 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (407)
=++.+...|++++|.+...++.. ..|.+...+.+-+-+..+.+++++|+.+.+.-.... .+...+..-+-+..
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~---~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~----~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILS---IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL----VINSFFFEKAYCEY 90 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHh---cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh----hcchhhHHHHHHHH
Confidence 45667788999999999999988 456677888888888888888888886654432211 01111111223334
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 015416 96 NNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGE 152 (407)
Q Consensus 96 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 152 (407)
+.+..++|+..+.-.... +..+...-...+.+.|++++|+++|+.+.+
T Consensus 91 rlnk~Dealk~~~~~~~~---------~~~ll~L~AQvlYrl~~ydealdiY~~L~k 138 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRL---------DDKLLELRAQVLYRLERYDEALDIYQHLAK 138 (652)
T ss_pred HcccHHHHHHHHhccccc---------chHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 555566665555521111 222444445555556666666666655533
No 93
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.12 E-value=5.8e-07 Score=75.17 Aligned_cols=273 Identities=14% Similarity=0.102 Sum_probs=205.8
Q ss_pred cCHHHHHHHH---HHHHhcCChhhHHHHHHHHHHhhCCccCCcch-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCc
Q 015416 8 ADPVVYSYLM---LGFVRDGDSDGVFRLFEELKEKLGGVVSDGVV-YGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMS 83 (407)
Q Consensus 8 p~~~~~~~li---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 83 (407)
.|+..|.++. ..|...|....|+.=+..+.+. .||-.. -..-...+.+.|.++.|..-|+..++..|+-...
T Consensus 67 ~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel----KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~ 142 (504)
T KOG0624|consen 67 GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL----KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLV 142 (504)
T ss_pred CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc----CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchh
Confidence 3455554443 5678889999999989888874 455332 2335667889999999999999999887532222
Q ss_pred hhhH------------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 015416 84 AVAN------------NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMG 151 (407)
Q Consensus 84 ~~~~------------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 151 (407)
...+ ...+..+...|+...|+.....+++..+- +...+..-..+|...|++..|+.-++...
T Consensus 143 ~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W------da~l~~~Rakc~i~~~e~k~AI~Dlk~as 216 (504)
T KOG0624|consen 143 LEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW------DASLRQARAKCYIAEGEPKKAIHDLKQAS 216 (504)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc------hhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 2222 22345567789999999999999986433 77788889999999999999999888887
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH----HHHH---------HHHHHhcCChHHHHHHHH
Q 015416 152 EYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYT----YGLL---------MDACFEVNRVDDGATYFR 218 (407)
Q Consensus 152 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~----~~~l---------~~~~~~~g~~~~a~~~~~ 218 (407)
+.. ..++..+.-+-..+...|+...++...++.++ +.||-.. |..+ +......+++.++.+..+
T Consensus 217 kLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge 293 (504)
T KOG0624|consen 217 KLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGE 293 (504)
T ss_pred hcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 765 45677777788889999999999999999887 4566321 2211 122345678888888888
Q ss_pred HHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 015416 219 KMVDSGLRPN---LAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDG 293 (407)
Q Consensus 219 ~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 293 (407)
..++...... ...+..+-.++...|++.+|++...+++...+.|..++.--..+|.-...++.|+.-|+.+.+.+
T Consensus 294 ~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 294 KVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 8887532211 22455667778888999999999999999777789999999999999999999999999998864
No 94
>PLN02789 farnesyltranstransferase
Probab=99.12 E-value=2.9e-07 Score=79.86 Aligned_cols=215 Identities=10% Similarity=0.033 Sum_probs=166.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCCchhhHHHH
Q 015416 12 VYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKG-MEEEAMECYNEAVGENSSVKMSAVANNSV 90 (407)
Q Consensus 12 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (407)
++..+-..+...+..++|+.++.++++. .|-+..+|+....++...| ++++++..++++...+ +.+..+|+..
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l---nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n---pknyqaW~~R 112 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL---NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN---PKNYQIWHHR 112 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH---CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC---CcchHHhHHH
Confidence 4556666777788999999999999996 3446778888888888888 6899999999999887 5567778776
Q ss_pred HHHHHhcCCH--HHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 015416 91 LDALCNNGKF--DEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQ 168 (407)
Q Consensus 91 ~~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 168 (407)
..++.+.|+. +.++.+++++++..+. +..+|+....++...|+++++++.++++++.+ +.+...|+....+
T Consensus 113 ~~~l~~l~~~~~~~el~~~~kal~~dpk------Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~v 185 (320)
T PLN02789 113 RWLAEKLGPDAANKELEFTRKILSLDAK------NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFV 185 (320)
T ss_pred HHHHHHcCchhhHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHH
Confidence 6666677763 6789999999988765 78899999999999999999999999999987 4677788877766
Q ss_pred HHHc---CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 015416 169 LCKN---GML----AEAEELYGEMSDKGVNPDEYTYGLLMDACFEV----NRVDDGATYFRKMVDSGLRPNLAVYNRLVG 237 (407)
Q Consensus 169 ~~~~---g~~----~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 237 (407)
+.+. |.+ ++.+.+..+++... +-+...|+.+...+... +...+|...+.++.+.+ +.+......|+.
T Consensus 186 l~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d 263 (320)
T PLN02789 186 ITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLD 263 (320)
T ss_pred HHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHH
Confidence 6554 222 46777777777753 34577788788877763 34566888888877643 345667888888
Q ss_pred HHHh
Q 015416 238 KLVQ 241 (407)
Q Consensus 238 ~~~~ 241 (407)
.|+.
T Consensus 264 ~~~~ 267 (320)
T PLN02789 264 LLCE 267 (320)
T ss_pred HHHh
Confidence 8875
No 95
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=2e-07 Score=78.16 Aligned_cols=300 Identities=14% Similarity=0.099 Sum_probs=167.6
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC--------------C--
Q 015416 15 YLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGEN--------------S-- 78 (407)
Q Consensus 15 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------~-- 78 (407)
.+...+.+.|++++|+..|.-+... ..++...+..|..++.-.|.+.+|..+-.++.+.. .
T Consensus 62 Wia~C~fhLgdY~~Al~~Y~~~~~~---~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk 138 (557)
T KOG3785|consen 62 WIAHCYFHLGDYEEALNVYTFLMNK---DDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEK 138 (557)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhcc---CCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHH
Confidence 3556778889999999999888774 55677788888888888888888877655443211 0
Q ss_pred -------CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHH-HHHHHHHhcCCHHHHHHHHHHH
Q 015416 79 -------SVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFN-VMADGYCGQGRFKDAIEVFRKM 150 (407)
Q Consensus 79 -------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~ 150 (407)
++..+..--.+|.......-.+.+|+.++.+++...+.. ...| .+.-+|.+..-++-+.+++.-.
T Consensus 139 ~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey-------~alNVy~ALCyyKlDYydvsqevl~vY 211 (557)
T KOG3785|consen 139 RILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY-------IALNVYMALCYYKLDYYDVSQEVLKVY 211 (557)
T ss_pred HHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh-------hhhHHHHHHHHHhcchhhhHHHHHHHH
Confidence 001111112233333334445777777777777654321 1222 2344556666666666666555
Q ss_pred hhCCCCCCHHHHHHHHHHHHHc--CCHH---------------------------------HHHHHHHHHHhCCCCCCHH
Q 015416 151 GEYRCSPDTLSFNNLIDQLCKN--GMLA---------------------------------EAEELYGEMSDKGVNPDEY 195 (407)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~~~~--g~~~---------------------------------~a~~~~~~~~~~~~~p~~~ 195 (407)
++. ++.++...|..+....+. |+.. .|++++-.+.+ + -+.
T Consensus 212 L~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~--~--IPE 286 (557)
T KOG3785|consen 212 LRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK--H--IPE 286 (557)
T ss_pred HHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHh--h--ChH
Confidence 443 233333333333322221 1111 11111111110 0 011
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHH--------------------------------------HHCCCCCC-HHHHHHHH
Q 015416 196 TYGLLMDACFEVNRVDDGATYFRKM--------------------------------------VDSGLRPN-LAVYNRLV 236 (407)
Q Consensus 196 ~~~~l~~~~~~~g~~~~a~~~~~~~--------------------------------------~~~~~~~~-~~~~~~l~ 236 (407)
....++-.|.+.++..+|..+.+.+ -+.+..-| ..--.++.
T Consensus 287 ARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmA 366 (557)
T KOG3785|consen 287 ARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMA 366 (557)
T ss_pred hhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHH
Confidence 2223333444455555554444333 22111111 11223444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHH
Q 015416 237 GKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREE 316 (407)
Q Consensus 237 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 316 (407)
..+.-..++++.+.++..+..-+..|......+.++++..|++.+|.++|-++.... +.........|+++|.+.++++
T Consensus 367 s~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~-ikn~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 367 SYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPE-IKNKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChh-hhhhHHHHHHHHHHHHhcCCch
Confidence 455555667777777777777555566666778899999999999999998876542 3444445567889999999999
Q ss_pred HHHHHHHHHHHhhH
Q 015416 317 EVVKLMEKKEREKA 330 (407)
Q Consensus 317 ~A~~~~~~~~~~~~ 330 (407)
-|..++-++...+.
T Consensus 446 lAW~~~lk~~t~~e 459 (557)
T KOG3785|consen 446 LAWDMMLKTNTPSE 459 (557)
T ss_pred HHHHHHHhcCCchh
Confidence 99998877754443
No 96
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.11 E-value=1.5e-06 Score=80.21 Aligned_cols=126 Identities=15% Similarity=0.083 Sum_probs=107.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 015416 199 LLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGK 278 (407)
Q Consensus 199 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 278 (407)
.....+.+.+..++|...+.++... .+.....|...+..+...|.+++|...|.....-.|.++.+...+..++.+.|+
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~ 733 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGS 733 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence 4455566777888888888887764 244566888888999999999999999999999888889999999999999999
Q ss_pred HHHHHH--HHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 015416 279 LDEILE--IVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKER 327 (407)
Q Consensus 279 ~~~A~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 327 (407)
..-|.. ++..+++.+ +.+.+.|..++..+.+.|+.++|.+.|.-...
T Consensus 734 ~~la~~~~~L~dalr~d--p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 734 PRLAEKRSLLSDALRLD--PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred cchHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 888888 999999875 78888999999999999999999999987654
No 97
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.10 E-value=5.1e-08 Score=81.97 Aligned_cols=105 Identities=15% Similarity=0.102 Sum_probs=69.8
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccccc
Q 015416 45 SDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124 (407)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (407)
.....+..++..+...|+++.|...|+++....|+-+....++..++.++...|++++|...++++.+..+.... ..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~ 107 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD---AD 107 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc---hH
Confidence 355677888888889999999999999988876432222356777888889999999999999998887654211 11
Q ss_pred chHHHHHHHHHhc--------CCHHHHHHHHHHHhh
Q 015416 125 GSFNVMADGYCGQ--------GRFKDAIEVFRKMGE 152 (407)
Q Consensus 125 ~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~ 152 (407)
.++..+..++... |++++|.+.|+.+..
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 143 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR 143 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence 1344455555443 344444444444443
No 98
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.09 E-value=7.6e-08 Score=92.66 Aligned_cols=221 Identities=9% Similarity=0.026 Sum_probs=123.9
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhH
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVAN 87 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (407)
.+...+..|+..|...+++++|.++.+...+. .|-....|..++..+.+.++...+..+ .+...
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~---~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~----------- 92 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE---HKKSISALYISGILSLSRRPLNDSNLL--NLIDS----------- 92 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-----------
Confidence 35566889999999999999999999977774 444667777777788888886666555 33322
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015416 88 NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLID 167 (407)
Q Consensus 88 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 167 (407)
.....++.-...++..+...+. +..++..++.+|-+.|+.++|..+|+++++.. +-|..+.|.++-
T Consensus 93 ------~~~~~~~~~ve~~~~~i~~~~~-------~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY 158 (906)
T PRK14720 93 ------FSQNLKWAIVEHICDKILLYGE-------NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLAT 158 (906)
T ss_pred ------cccccchhHHHHHHHHHHhhhh-------hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHH
Confidence 2222222222222222222111 22244555555555555555555555555554 344555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-------------------CCCCC
Q 015416 168 QLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDS-------------------GLRPN 228 (407)
Q Consensus 168 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------------~~~~~ 228 (407)
.|... ++++|++++.+++.. |...+++..+.+++.++... |..--
T Consensus 159 ~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~ 222 (906)
T PRK14720 159 SYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRL 222 (906)
T ss_pred HHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchh
Confidence 55555 555555555555432 12222222333333332221 11122
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 015416 229 LAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALS 274 (407)
Q Consensus 229 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 274 (407)
..++..+-..|...++|+++..+++.+++..+.|..+..-++.+|.
T Consensus 223 ~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 223 VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 3344555566667777778888887777766667777777777665
No 99
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.05 E-value=1.2e-06 Score=79.17 Aligned_cols=247 Identities=15% Similarity=0.139 Sum_probs=177.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHH
Q 015416 13 YSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLD 92 (407)
Q Consensus 13 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (407)
|..++..| ..+++...++..+.+.+. .+-...+....+-.+...|+-++|.......+..+ ..+.+.|..++-
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k---~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d---~~S~vCwHv~gl 83 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK---FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND---LKSHVCWHVLGL 83 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh---CCccchhHHhccchhhcccchHHHHHHHHHHhccC---cccchhHHHHHH
Confidence 45555554 568899999999998884 55577777777777788899999999998888766 557788888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 015416 93 ALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKN 172 (407)
Q Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 172 (407)
.+....++++|+++|+.+...++. |...+.-+.-.-++.|+++.....-..+.+.. +..-..|..++.++.-.
T Consensus 84 ~~R~dK~Y~eaiKcy~nAl~~~~d------N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~ 156 (700)
T KOG1156|consen 84 LQRSDKKYDEAIKCYRNALKIEKD------NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLL 156 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHH
Confidence 888889999999999999887655 66778777777888888888888888877754 34455777788888888
Q ss_pred CCHHHHHHHHHHHHhCC-CCCCHHHHHHHH------HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 015416 173 GMLAEAEELYGEMSDKG-VNPDEYTYGLLM------DACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGML 245 (407)
Q Consensus 173 g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 245 (407)
|++..|..+++...+.. -.|+...|.-.. ......|.++.|.+.+..-... +......-..-...+.+.+++
T Consensus 157 g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~l 235 (700)
T KOG1156|consen 157 GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQL 235 (700)
T ss_pred HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhH
Confidence 88999988888887543 245555444332 2334566666666666554432 121222333455667778888
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 015416 246 DEAKSFFDIMVKKLKMDDASYKFMMKALS 274 (407)
Q Consensus 246 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 274 (407)
++|..++..++...|.+..-|..+..++.
T Consensus 236 EeA~~~y~~Ll~rnPdn~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 236 EEAVKVYRRLLERNPDNLDYYEGLEKALG 264 (700)
T ss_pred HhHHHHHHHHHhhCchhHHHHHHHHHHHH
Confidence 88888888888866666666666666664
No 100
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.04 E-value=5.6e-06 Score=75.04 Aligned_cols=306 Identities=14% Similarity=0.136 Sum_probs=199.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCC---cchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--------
Q 015416 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSD---GVVYGSLMKGYFMKGMEEEAMECYNEAVGENSS-------- 79 (407)
Q Consensus 11 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------- 79 (407)
..|..+...|-+.|+++.|..+|++..+- ..+-- ..+|..-+..-.+..+++.|+.+.+++.....+
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V--~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~ 465 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKV--PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDN 465 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcC--CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcC
Confidence 35788888899999999999999988774 22111 345666666667788899999988887653210
Q ss_pred -CC------CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 015416 80 -VK------MSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGE 152 (407)
Q Consensus 80 -~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 152 (407)
.+ .+...|..+++.--..|-++....+|++++...+. ++.........+-...-++++.++|++-+.
T Consensus 466 ~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria------TPqii~NyAmfLEeh~yfeesFk~YErgI~ 539 (835)
T KOG2047|consen 466 SEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA------TPQIIINYAMFLEEHKYFEESFKAYERGIS 539 (835)
T ss_pred CCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC------CHHHHHHHHHHHHhhHHHHHHHHHHHcCCc
Confidence 01 12334555666666778888888899988887654 333444444455556667888888888766
Q ss_pred CCCCCCHH-HHHHHHHHHHH---cCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 015416 153 YRCSPDTL-SFNNLIDQLCK---NGMLAEAEELYGEMSDKGVNPDEY--TYGLLMDACFEVNRVDDGATYFRKMVDSGLR 226 (407)
Q Consensus 153 ~~~~~~~~-~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 226 (407)
.--.|+.. .|+..+.-+.+ ...++.|..+|+++++ |.+|... .|......=-..|-...|+.+|+++... ++
T Consensus 540 LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~ 617 (835)
T KOG2047|consen 540 LFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VK 617 (835)
T ss_pred cCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CC
Confidence 54445543 56666655544 2468899999999998 5665432 2222222223457788899999987653 34
Q ss_pred CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHH
Q 015416 227 PNL--AVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDA---SYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEEL 301 (407)
Q Consensus 227 ~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 301 (407)
+.. ..|+..|.--...=-+.....+|++.++.. |+.. +.......-++.|..+.|..+|...-+......+...
T Consensus 618 ~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~L-p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~f 696 (835)
T KOG2047|consen 618 EAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESL-PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEF 696 (835)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhC-ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHH
Confidence 332 367777765555545566778888888753 3333 3344455667889999999999888776444455667
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHHhhHH
Q 015416 302 QEFVKGELSKEGREEEVVKLMEKKEREKAE 331 (407)
Q Consensus 302 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 331 (407)
|...-..-.+.|+- +.+++|.+.+..
T Consensus 697 W~twk~FEvrHGne----dT~keMLRikRs 722 (835)
T KOG2047|consen 697 WDTWKEFEVRHGNE----DTYKEMLRIKRS 722 (835)
T ss_pred HHHHHHHHHhcCCH----HHHHHHHHHHHH
Confidence 77777777888983 344555544433
No 101
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.03 E-value=9.7e-08 Score=77.13 Aligned_cols=157 Identities=13% Similarity=0.135 Sum_probs=114.9
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHH
Q 015416 16 LMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALC 95 (407)
Q Consensus 16 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (407)
-+..|...|+++.+....+.+.. |. . .+...++.++++..++..++.+ +.+...|..+...|.
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~------~~-~-------~~~~~~~~~~~i~~l~~~L~~~---P~~~~~w~~Lg~~~~ 84 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLAD------PL-H-------QFASQQTPEAQLQALQDKIRAN---PQNSEQWALLGEYYL 84 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhC------cc-c-------cccCchhHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHH
Confidence 34567788888876554432221 11 0 1112567788888888888877 567888888988999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHH-HHhcCC--HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 015416 96 NNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADG-YCGQGR--FKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKN 172 (407)
Q Consensus 96 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 172 (407)
..|+++.|...|++..+..+. +...+..+..+ +...|+ .++|.+++++..+.+ +.+...+..+...+...
T Consensus 85 ~~g~~~~A~~a~~~Al~l~P~------~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~ 157 (198)
T PRK10370 85 WRNDYDNALLAYRQALQLRGE------NAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQ 157 (198)
T ss_pred HCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHc
Confidence 999999999999988887755 66677788776 466676 488999999888876 45777888888888889
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHH
Q 015416 173 GMLAEAEELYGEMSDKGVNPDEYTY 197 (407)
Q Consensus 173 g~~~~a~~~~~~~~~~~~~p~~~~~ 197 (407)
|++++|+..|+++.+.. +|+..-+
T Consensus 158 g~~~~Ai~~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 158 ADYAQAIELWQKVLDLN-SPRVNRT 181 (198)
T ss_pred CCHHHHHHHHHHHHhhC-CCCccHH
Confidence 99999999999888753 4444333
No 102
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.02 E-value=5.4e-08 Score=78.39 Aligned_cols=165 Identities=16% Similarity=0.139 Sum_probs=124.1
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccc
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLG 125 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (407)
|..+ ..+...+...|+-+....+........ +.+......++....+.|++..|...|+++....++ |..
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~---~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~------d~~ 135 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY---PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT------DWE 135 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC---cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC------Chh
Confidence 4555 666777777788888877777765443 445556666788888888888888888888776554 777
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACF 205 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 205 (407)
+|+.+.-+|.+.|+++.|..-|.+..+.. +.+...++.+.-.+.-.|+++.|..++......+ .-|...-..+.....
T Consensus 136 ~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~ 213 (257)
T COG5010 136 AWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVG 213 (257)
T ss_pred hhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHh
Confidence 88888888888888888888888887764 4566677888888888888888888888887653 336666777778888
Q ss_pred hcCChHHHHHHHHHHHH
Q 015416 206 EVNRVDDGATYFRKMVD 222 (407)
Q Consensus 206 ~~g~~~~a~~~~~~~~~ 222 (407)
..|+++.|..+...-..
T Consensus 214 ~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 214 LQGDFREAEDIAVQELL 230 (257)
T ss_pred hcCChHHHHhhcccccc
Confidence 88888888887766543
No 103
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=2.9e-06 Score=75.28 Aligned_cols=298 Identities=16% Similarity=0.089 Sum_probs=213.0
Q ss_pred HHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhc
Q 015416 18 LGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNN 97 (407)
Q Consensus 18 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 97 (407)
.+.+..||++.|+.+|-+.+.. .|+|...|+.-..+|...|++++|++--.+.+...|. -...|...+.++.-.
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l---~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~---w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIML---SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD---WAKGYSRKGAALFGL 83 (539)
T ss_pred HhhcccccHHHHHHHHHHHHcc---CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc---hhhHHHHhHHHHHhc
Confidence 4567889999999999999985 4568889999999999999999999998888887643 356899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCC--------------------------------------
Q 015416 98 GKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGR-------------------------------------- 139 (407)
Q Consensus 98 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------------------------------------- 139 (407)
|++++|+..|.+-++..+. +...++.+..++.-...
T Consensus 84 g~~~eA~~ay~~GL~~d~~------n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~ 157 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPS------NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQK 157 (539)
T ss_pred ccHHHHHHHHHHHhhcCCc------hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhc
Confidence 9999999999999887655 66677777776621100
Q ss_pred -------------HHHHHHHHHHH-----hhC-------CCCC---------CH-------------HHHHHHHHHHHHc
Q 015416 140 -------------FKDAIEVFRKM-----GEY-------RCSP---------DT-------------LSFNNLIDQLCKN 172 (407)
Q Consensus 140 -------------~~~A~~~~~~~-----~~~-------~~~~---------~~-------------~~~~~l~~~~~~~ 172 (407)
+..+.-.+... ... +..| .. .-...++++..+.
T Consensus 158 ~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykk 237 (539)
T KOG0548|consen 158 NPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKK 237 (539)
T ss_pred CcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHh
Confidence 00000000000 000 0001 00 1134566677777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHhcCCH
Q 015416 173 GMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYN-------RLVGKLVQVGML 245 (407)
Q Consensus 173 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~g~~ 245 (407)
.++..|++.+....+.. -+..-++....+|...|.+..+........+.|.. ...-|+ .++.+|.+.+++
T Consensus 238 k~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~ 314 (539)
T KOG0548|consen 238 KDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDY 314 (539)
T ss_pred hhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhH
Confidence 78888888888888754 45556677778888888888888877777765522 222233 344466667888
Q ss_pred HHHHHHHHHHHh-cCCCCHH-------------------------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcH
Q 015416 246 DEAKSFFDIMVK-KLKMDDA-------------------------SYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSE 299 (407)
Q Consensus 246 ~~A~~~~~~~~~-~~~~~~~-------------------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 299 (407)
+.|...|.+.+. ...|+.. -...-+..+.+.|++..|+..|.+++... |-+.
T Consensus 315 ~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--P~Da 392 (539)
T KOG0548|consen 315 EGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--PEDA 392 (539)
T ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--Cchh
Confidence 999999988776 2222211 12223567888999999999999999974 7788
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHHH
Q 015416 300 ELQEFVKGELSKEGREEEVVKLMEKKEREKAEA 332 (407)
Q Consensus 300 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 332 (407)
..|...+-+|.+.|.+..|++-.+...+..+..
T Consensus 393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~ 425 (539)
T KOG0548|consen 393 RLYSNRAACYLKLGEYPEALKDAKKCIELDPNF 425 (539)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchH
Confidence 899999999999999999999877777655443
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.00 E-value=1.9e-06 Score=87.40 Aligned_cols=306 Identities=13% Similarity=0.079 Sum_probs=192.3
Q ss_pred HHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC----CC--chhhHHHHHHH
Q 015416 20 FVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSV----KM--SAVANNSVLDA 93 (407)
Q Consensus 20 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~--~~~~~~~l~~~ 93 (407)
....|++..+..+++.+... ....++.........+...|++++|..++..+...-... .+ .......+...
T Consensus 384 l~~~g~~~~l~~~l~~lp~~--~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWE--VLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHhcCChHHHHHHHHhCCHH--HHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34456666555555554221 111233344555666678899999999998876432110 11 11222334456
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---CCC--HHHHHHHHHH
Q 015416 94 LCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRC---SPD--TLSFNNLIDQ 168 (407)
Q Consensus 94 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~~~~~l~~~ 168 (407)
+...|+++.|...+++......... ........+.+...+...|+++.|...+.+.....- .+. ..++..+...
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTW-YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 6789999999999999876422211 000123456677788899999999999988764210 111 2345667778
Q ss_pred HHHcCCHHHHHHHHHHHHh----CCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCC--CHHHHHHHHH
Q 015416 169 LCKNGMLAEAEELYGEMSD----KGVN--P-DEYTYGLLMDACFEVNRVDDGATYFRKMVDS--GLRP--NLAVYNRLVG 237 (407)
Q Consensus 169 ~~~~g~~~~a~~~~~~~~~----~~~~--p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~--~~~~~~~l~~ 237 (407)
+...|+++.|...+++... .+.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 8899999999999988764 2211 1 2334555667778889999999999887642 1112 2335556777
Q ss_pred HHHhcCCHHHHHHHHHHHHh---cCCCCHH--HH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--cHHHHHHHHHH
Q 015416 238 KLVQVGMLDEAKSFFDIMVK---KLKMDDA--SY--KFMMKALSDGGKLDEILEIVGGILDDGGIEF--SEELQEFVKGE 308 (407)
Q Consensus 238 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~--~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~ 308 (407)
.+...|+++.|...+..... ....... .. ...+..+...|+.+.|..++..........+ ....+..++.+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 88899999999999988865 1111111 11 1122445568999999999877654211011 11123567778
Q ss_pred HhhcCcHHHHHHHHHHHHHh
Q 015416 309 LSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 309 ~~~~g~~~~A~~~~~~~~~~ 328 (407)
+...|+.++|...+++....
T Consensus 701 ~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 701 QILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 89999999999999988764
No 105
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.00 E-value=5.6e-07 Score=85.94 Aligned_cols=134 Identities=10% Similarity=0.052 Sum_probs=97.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 015416 191 NPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPN-LAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFM 269 (407)
Q Consensus 191 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 269 (407)
..+...+..|.......|.+++|..+++.+.+. .|+ ......++..+.+.+++++|+..+++.....|.+......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 445667777777777777777777777777773 444 44666777777777788888877777777777777777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh
Q 015416 270 MKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 270 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 328 (407)
..++.+.|++++|..+|+++...+ +-+...+..++.++...|+.++|...|++....
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777888888888888777632 444667777777777778888888777777653
No 106
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.99 E-value=5.4e-08 Score=74.42 Aligned_cols=109 Identities=11% Similarity=-0.019 Sum_probs=73.8
Q ss_pred HHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 31 RLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRM 110 (407)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 110 (407)
.+|++..+. ++..+..++..+...|++++|...|+.++..+ +.+...|..+..++...|++++|...|+++
T Consensus 14 ~~~~~al~~------~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~y~~A 84 (144)
T PRK15359 14 DILKQLLSV------DPETVYASGYASWQEGDYSRAVIDFSWLVMAQ---PWSWRAHIALAGTWMMLKEYTTAINFYGHA 84 (144)
T ss_pred HHHHHHHHc------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455555553 23335556667777777777777777777665 446677777777777777777777777777
Q ss_pred HhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 015416 111 KNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYR 154 (407)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 154 (407)
.+..+. +..++..+..++...|++++|+..|+..+...
T Consensus 85 l~l~p~------~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 85 LMLDAS------HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HhcCCC------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 766543 55667777777777777777777777776654
No 107
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.97 E-value=2.8e-07 Score=74.40 Aligned_cols=158 Identities=18% Similarity=0.139 Sum_probs=84.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015416 88 NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLID 167 (407)
Q Consensus 88 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 167 (407)
..+-..+...|+-+....+........+. +......++....+.|++..|+..|++..... ++|...|+.+.-
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~------d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPK------DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcc------cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 44445555555555555555554332221 33344445555566666666666666655543 455566666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 015416 168 QLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDE 247 (407)
Q Consensus 168 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 247 (407)
+|.+.|+++.|..-|.+..+.. .-++..++.+.-.|.-.|+++.|..++......+ .-|..+-..|.......|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHH
Confidence 6666666666666666655531 2234455555555555666666666665555432 2244555555555555666655
Q ss_pred HHHHHHH
Q 015416 248 AKSFFDI 254 (407)
Q Consensus 248 A~~~~~~ 254 (407)
|.++...
T Consensus 221 A~~i~~~ 227 (257)
T COG5010 221 AEDIAVQ 227 (257)
T ss_pred HHhhccc
Confidence 5555443
No 108
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.97 E-value=3.4e-07 Score=88.35 Aligned_cols=233 Identities=13% Similarity=0.091 Sum_probs=158.3
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccccc
Q 015416 45 SDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124 (407)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (407)
.+...+..|+..+...+++++|.++.+..+...| -....|-.++..+.+.++...+.-+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P---~~i~~yy~~G~l~~q~~~~~~~~lv------------------ 87 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHK---KSISALYISGILSLSRRPLNDSNLL------------------ 87 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---cceehHHHHHHHHHhhcchhhhhhh------------------
Confidence 3567888999999999999999999998887753 3444555555567777775555444
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015416 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDAC 204 (407)
Q Consensus 125 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 204 (407)
.++.......++.-...+...+...+ -+...+..++.+|-+.|+.++|..+|+++++.. +-++.+.+.+...|
T Consensus 88 ----~~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ 160 (906)
T PRK14720 88 ----NLIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSY 160 (906)
T ss_pred ----hhhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHH
Confidence 33444444555544444555565543 566688899999999999999999999999976 45788999999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH---H--HhcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhcC
Q 015416 205 FEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGK---L--VQVGMLDEAKSFFDIMVK--KLKMDDASYKFMMKALSDGG 277 (407)
Q Consensus 205 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~--~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g 277 (407)
... ++++|++++.+++..-+ +..-|+.+... + ....+++.-.++.+.+.. +..--..++..+...|...+
T Consensus 161 ae~-dL~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~ 237 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALE 237 (906)
T ss_pred HHh-hHHHHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhh
Confidence 999 99999999999886411 11111111111 1 112233333334444433 22233445556667788888
Q ss_pred CHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHh
Q 015416 278 KLDEILEIVGGILDDGGIEFSEELQEFVKGELS 310 (407)
Q Consensus 278 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 310 (407)
+|++++.+++.+++.. +-+.....-++.+|.
T Consensus 238 ~~~~~i~iLK~iL~~~--~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 238 DWDEVIYILKKILEHD--NKNNKAREELIRFYK 268 (906)
T ss_pred hhhHHHHHHHHHHhcC--CcchhhHHHHHHHHH
Confidence 9999999999999864 556667777888776
No 109
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.96 E-value=6.8e-07 Score=87.37 Aligned_cols=229 Identities=10% Similarity=0.005 Sum_probs=183.1
Q ss_pred HHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-----HHHHHHHHHHHHHcCCHHHHH
Q 015416 105 KLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD-----TLSFNNLIDQLCKNGMLAEAE 179 (407)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~ 179 (407)
+-|++.....|. +...|-..|......++.++|.+++++.+.. +.+. ...|.++++.-..-|.-+...
T Consensus 1445 eDferlvrssPN------SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~ 1517 (1710)
T KOG1070|consen 1445 EDFERLVRSSPN------SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLK 1517 (1710)
T ss_pred HHHHHHHhcCCC------cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHH
Confidence 344555554443 6668999999999999999999999998763 2221 236777777777778888999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 015416 180 ELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKL 259 (407)
Q Consensus 180 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 259 (407)
++|+++.+. .-....|..|...|.+.+..++|.++|+.|.+. +.-...+|...+..+.++.+-+.|..++.++++..
T Consensus 1518 kVFeRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l 1594 (1710)
T KOG1070|consen 1518 KVFERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL 1594 (1710)
T ss_pred HHHHHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc
Confidence 999999884 223567889999999999999999999999975 34567799999999999999999999999999955
Q ss_pred CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHH-HHHHH
Q 015416 260 KM--DDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAE-AKARE 336 (407)
Q Consensus 260 ~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~ 336 (407)
|. +.......++.-.+.|+.+.+..+|+..+..+ |-....|..+++.-.++|+.+.+..+|+++...+.. .+++.
T Consensus 1595 Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKf 1672 (1710)
T KOG1070|consen 1595 PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKF 1672 (1710)
T ss_pred chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHH
Confidence 55 56677777888889999999999999999974 667779999999999999999999999999876533 23444
Q ss_pred HHHHHHHHH
Q 015416 337 AEAAEAAKR 345 (407)
Q Consensus 337 ~~~~~~~~~ 345 (407)
....++.+.
T Consensus 1673 ffKkwLeyE 1681 (1710)
T KOG1070|consen 1673 FFKKWLEYE 1681 (1710)
T ss_pred HHHHHHHHH
Confidence 444444444
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.92 E-value=1.1e-07 Score=72.75 Aligned_cols=95 Identities=11% Similarity=-0.062 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 015416 197 YGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDG 276 (407)
Q Consensus 197 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 276 (407)
+..+...+...|++++|...|+.+.... +.+...|..++.++...|++++|...|++.....|.++..+..++.++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 3445566666677777777776666543 335556666666777777777777777777766666666777777777777
Q ss_pred CCHHHHHHHHHHHHhc
Q 015416 277 GKLDEILEIVGGILDD 292 (407)
Q Consensus 277 g~~~~A~~~~~~~~~~ 292 (407)
|++++|+..|+.++..
T Consensus 106 g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 106 GEPGLAREAFQTAIKM 121 (144)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 7777777777776664
No 111
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.92 E-value=2.5e-05 Score=69.57 Aligned_cols=130 Identities=14% Similarity=0.115 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 015416 195 YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRP-NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKAL 273 (407)
Q Consensus 195 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 273 (407)
.+|..+++.-.+..-+..|..+|.++.+.+..+ ++.++++++..||. ++..-|.++|+--++.++.++.--...+.-+
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFL 445 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 357777888888888999999999999876666 67788888888775 6889999999999987888888888889999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCcH--HHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015416 274 SDGGKLDEILEIVGGILDDGGIEFSE--ELQEFVKGELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 274 ~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~ 326 (407)
.+.++-..+..+|++++.. +++++. ++|..++.--..-|+..-+.++-+++.
T Consensus 446 ~~lNdd~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTS-VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHhCcchhHHHHHHHHHhc-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 9999999999999999987 455544 589999988888899999888877664
No 112
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.92 E-value=5.9e-08 Score=78.41 Aligned_cols=128 Identities=13% Similarity=0.196 Sum_probs=109.2
Q ss_pred cCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHH-HhcCC--
Q 015416 23 DGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDAL-CNNGK-- 99 (407)
Q Consensus 23 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~-- 99 (407)
.++.++++..++...+. .|.+...|..++..|...|+++.|+..|+++...+ +.+...+..+..++ ...|+
T Consensus 52 ~~~~~~~i~~l~~~L~~---~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~---P~~~~~~~~lA~aL~~~~g~~~ 125 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR---GENAELYAALATVLYYQAGQHM 125 (198)
T ss_pred chhHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCCCC
Confidence 45667888888888885 56799999999999999999999999999999987 55788888888864 67777
Q ss_pred HHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 015416 100 FDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFN 163 (407)
Q Consensus 100 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 163 (407)
.++|.+++++..+.++. +..++..+...+...|++++|+..|+++.+.. +|+..-+.
T Consensus 126 ~~~A~~~l~~al~~dP~------~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~~ 182 (198)
T PRK10370 126 TPQTREMIDKALALDAN------EVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRTQ 182 (198)
T ss_pred cHHHHHHHHHHHHhCCC------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHHH
Confidence 59999999999998876 67799999999999999999999999999875 55554443
No 113
>PF12854 PPR_1: PPR repeat
Probab=98.90 E-value=2.1e-09 Score=58.85 Aligned_cols=34 Identities=38% Similarity=0.751 Sum_probs=28.7
Q ss_pred CCCCcCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 015416 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELK 37 (407)
Q Consensus 4 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 37 (407)
+|+.||..+||+||++|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4788888888888888888888888888888773
No 114
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=1.3e-05 Score=71.99 Aligned_cols=297 Identities=14% Similarity=0.122 Sum_probs=144.1
Q ss_pred hcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC----------------------
Q 015416 22 RDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSS---------------------- 79 (407)
Q Consensus 22 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------------------- 79 (407)
+.+..++|+..++-..+ .+..+...-...+.+.|++++|+.+|+.+.+.+.+
T Consensus 91 rlnk~Dealk~~~~~~~------~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~ 164 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDR------LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLL 164 (652)
T ss_pred HcccHHHHHHHHhcccc------cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHH
Confidence 44555555555552211 13335555666777788888888888877544310
Q ss_pred ----CCCchhhHHH---HHHHHHhcCCHHHHHHHHHHHHhcCCC----CC----cccccc-chHHHHHHHHHhcCCHHHH
Q 015416 80 ----VKMSAVANNS---VLDALCNNGKFDEALKLFDRMKNEHNP----PK----RLAVNL-GSFNVMADGYCGQGRFKDA 143 (407)
Q Consensus 80 ----~~~~~~~~~~---l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~----~~~~~~-~~~~~l~~~~~~~g~~~~A 143 (407)
..| ..+|.. ....+...|++.+|+++++...+.+.. .+ .+.... ..-..|..++-..|+.++|
T Consensus 165 q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 165 QSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 011 123333 234566778899999888887322110 00 000000 1233456667788899999
Q ss_pred HHHHHHHhhCCCCCCHHH----HHHHHHHHHHcCCHH----------------HH-------------------------
Q 015416 144 IEVFRKMGEYRCSPDTLS----FNNLIDQLCKNGMLA----------------EA------------------------- 178 (407)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~----------------~a------------------------- 178 (407)
..++...++.. ++|... -|.|+..-....-++ .+
T Consensus 244 ~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk 322 (652)
T KOG2376|consen 244 SSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNK 322 (652)
T ss_pred HHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99888887765 333321 122221110000000 00
Q ss_pred -HHHHHHHHh-CCCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-
Q 015416 179 -EELYGEMSD-KGVNPDEYTYGLLMDACFE--VNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFD- 253 (407)
Q Consensus 179 -~~~~~~~~~-~~~~p~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~- 253 (407)
.++.+.... .+..| ...+..++..+.+ .....++..++...-+....-...+...+++.....|+++.|.+++.
T Consensus 323 ~~q~r~~~a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~ 401 (652)
T KOG2376|consen 323 MDQVRELSASLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSL 401 (652)
T ss_pred HHHHHHHHHhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 000000000 01112 2233333333322 12355666666666553222123455556666677777777777777
Q ss_pred -------HHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCCCcHHHHHHHHHHHhhcCcHHHHHHH
Q 015416 254 -------IMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDG-----GIEFSEELQEFVKGELSKEGREEEVVKL 321 (407)
Q Consensus 254 -------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 321 (407)
.+.+ ....+.+...+...+.+.++.+.|..++..++... +-..-..++..++..-.+.|+-++|..+
T Consensus 402 ~~~~~~ss~~~-~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~ 480 (652)
T KOG2376|consen 402 FLESWKSSILE-AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSL 480 (652)
T ss_pred Hhhhhhhhhhh-hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHH
Confidence 3322 23334444555555666555555555555544321 1111122333344444555777777777
Q ss_pred HHHHHHh
Q 015416 322 MEKKERE 328 (407)
Q Consensus 322 ~~~~~~~ 328 (407)
++++.+.
T Consensus 481 leel~k~ 487 (652)
T KOG2376|consen 481 LEELVKF 487 (652)
T ss_pred HHHHHHh
Confidence 7777653
No 115
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=2.4e-06 Score=69.10 Aligned_cols=152 Identities=18% Similarity=0.165 Sum_probs=89.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---
Q 015416 130 MADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFE--- 206 (407)
Q Consensus 130 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--- 206 (407)
-+..|+..|++++|++..... .+......=...+.+..+++-|.+.+++|.+.. +..|.+.|..++.+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLAT 184 (299)
T ss_pred hhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhc
Confidence 344566677777777666552 133333333444556666677777777776532 44555555555543
Q ss_pred -cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH-H
Q 015416 207 -VNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEIL-E 284 (407)
Q Consensus 207 -~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~ 284 (407)
.+.+..|.-+|+++.+. .+|++.+.+..+.++...|++++|..+++..+...+.++.+...++.+-...|...++. +
T Consensus 185 ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r 263 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTER 263 (299)
T ss_pred cchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHH
Confidence 24466667777776653 45666666666666667777777777777776666666666666666666666554433 3
Q ss_pred HHHHHHh
Q 015416 285 IVGGILD 291 (407)
Q Consensus 285 ~~~~~~~ 291 (407)
.+.++..
T Consensus 264 ~l~QLk~ 270 (299)
T KOG3081|consen 264 NLSQLKL 270 (299)
T ss_pred HHHHHHh
Confidence 3444433
No 116
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=2.5e-06 Score=68.98 Aligned_cols=250 Identities=12% Similarity=0.108 Sum_probs=164.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHH
Q 015416 54 MKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADG 133 (407)
Q Consensus 54 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 133 (407)
++-+.-.|++..++..-....... .+...-.-+.++|...|++.....- +.... .+ .......+...
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~----~~~e~d~y~~raylAlg~~~~~~~e---I~~~~-~~-----~lqAvr~~a~~ 81 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK----TDVELDVYMYRAYLALGQYQIVISE---IKEGK-AT-----PLQAVRLLAEY 81 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc----chhHHHHHHHHHHHHcccccccccc---ccccc-CC-----hHHHHHHHHHH
Confidence 344555688888877766654432 2233334456677777776543322 22211 11 33344444444
Q ss_pred HHhcCCHHHHHH-HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 015416 134 YCGQGRFKDAIE-VFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDD 212 (407)
Q Consensus 134 ~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 212 (407)
...-++.+.-+. +.+.+.......+......-+..|+..|++++|++...... +......=...+.+..+++-
T Consensus 82 ~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~ 155 (299)
T KOG3081|consen 82 LELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDL 155 (299)
T ss_pred hhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHH
Confidence 444555454443 34444443323333334444567889999999999887622 22233333455667888999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015416 213 GATYFRKMVDSGLRPNLAVYNRLVGKLVQ----VGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGG 288 (407)
Q Consensus 213 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 288 (407)
|.+.+++|.+. .+..+.+.|..++.+ .+.+.+|.-+|+++.+..+|++.+.+....++...|++++|..+++.
T Consensus 156 A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 156 AEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred HHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 99999999973 256677778777765 45789999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCcHHHHHHHHHHHhhcCcHHHH-HHHHHHHHH
Q 015416 289 ILDDGGIEFSEELQEFVKGELSKEGREEEV-VKLMEKKER 327 (407)
Q Consensus 289 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 327 (407)
++.++ .-++++...++-+-...|+..++ .+.+.++..
T Consensus 233 aL~kd--~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 233 ALDKD--AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHhcc--CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 99975 56677776666666667776554 455555553
No 117
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.86 E-value=6e-07 Score=85.76 Aligned_cols=147 Identities=9% Similarity=0.035 Sum_probs=120.6
Q ss_pred CccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccc
Q 015416 42 GVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLA 121 (407)
Q Consensus 42 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 121 (407)
..+.++..+..|..+..+.|.+++|..+++.+.+.. |.+...+..++.++.+.+++++|...+++.....+.
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~---Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~----- 152 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF---PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS----- 152 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC---CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-----
Confidence 345578888899999999999999999999999876 446778888889999999999999999999888765
Q ss_pred cccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 015416 122 VNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGL 199 (407)
Q Consensus 122 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 199 (407)
+......+..++.+.|++++|..+|+++...+ +.+..++..+..++...|+.++|...|++..+. ..|....|+.
T Consensus 153 -~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~ 227 (694)
T PRK15179 153 -SAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTR 227 (694)
T ss_pred -CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHH
Confidence 67788888999999999999999999998743 445778888999999999999999999998764 2334444443
No 118
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.84 E-value=3.2e-07 Score=85.72 Aligned_cols=260 Identities=13% Similarity=0.158 Sum_probs=177.5
Q ss_pred HHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 31 RLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRM 110 (407)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 110 (407)
..+-.+... |+.|+-.+|..+|.-|+..|+.+.|- +|..|.... .+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~--gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks--Lpv~e~vf~~lv~sh~~And~Enpk------ 79 (1088)
T KOG4318|consen 11 NFLALHEIS--GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS--LPVREGVFRGLVASHKEANDAENPK------ 79 (1088)
T ss_pred hHHHHHHHh--cCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc--ccccchhHHHHHhcccccccccCCC------
Confidence 345556666 99999999999999999999999998 999988777 6778888999998888888877665
Q ss_pred HhcCCCCCccccccchHHHHHHHHHhcCCHHH---HHHHHHHH----hhCCCCCCHHHH---------------HHHHHH
Q 015416 111 KNEHNPPKRLAVNLGSFNVMADGYCGQGRFKD---AIEVFRKM----GEYRCSPDTLSF---------------NNLIDQ 168 (407)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~----~~~~~~~~~~~~---------------~~l~~~ 168 (407)
.| .+.+|..|..+|...||+.. +.+.+..+ ...|+. ....| .+.+..
T Consensus 80 -----ep-----~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~ill 148 (1088)
T KOG4318|consen 80 -----EP-----LADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILL 148 (1088)
T ss_pred -----CC-----chhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHH
Confidence 22 66699999999999999765 22212221 222321 11111 122333
Q ss_pred HHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 015416 169 LCKNGMLAEAEELYGEMSDKG-VNPDEYTYGLLMDACFEVNR-VDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLD 246 (407)
Q Consensus 169 ~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 246 (407)
....|.++.+++++..+-... ..|.. .++.-+..... +++-..+.+...+ .|+..++..++..-...|+.+
T Consensus 149 lv~eglwaqllkll~~~Pvsa~~~p~~----vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d 221 (1088)
T KOG4318|consen 149 LVLEGLWAQLLKLLAKVPVSAWNAPFQ----VFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVD 221 (1088)
T ss_pred HHHHHHHHHHHHHHhhCCcccccchHH----HHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchh
Confidence 344455566655554442210 11111 12444433332 3333333333333 589999999999999999999
Q ss_pred HHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHH
Q 015416 247 EAKSFFDIMVK-KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLME 323 (407)
Q Consensus 247 ~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 323 (407)
.|..++..|.+ +++....-|..++-+ .++..-+..+++.|... |+.|+.+++...+..+...|....+.+..+
T Consensus 222 ~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~-gv~p~seT~adyvip~l~N~~t~~~~e~sq 295 (1088)
T KOG4318|consen 222 GAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEK-GVQPGSETQADYVIPQLSNGQTKYGEEGSQ 295 (1088)
T ss_pred hHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHh-cCCCCcchhHHHHHhhhcchhhhhcccccc
Confidence 99999999999 888888777777766 77888888888888775 799999999877777777776555544443
No 119
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=1e-05 Score=68.21 Aligned_cols=192 Identities=13% Similarity=0.070 Sum_probs=114.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 015416 129 VMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNG-------MLAEAEELYGEMSDKGVNPD-EYTYGLL 200 (407)
Q Consensus 129 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~p~-~~~~~~l 200 (407)
.|+--|.+++++.+|..+.+++.- .++.-|-.-.-.+...| ...-|.+.|+..-+.+..-| .....++
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~P----ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsm 365 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDP----TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSM 365 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCC----CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHH
Confidence 334445566666666655554431 22222222222222222 23344444444433333222 2223445
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHhcCCH
Q 015416 201 MDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASY-KFMMKALSDGGKL 279 (407)
Q Consensus 201 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~ 279 (407)
...+.-..++++++-++......- ..|...-..+.++++..|++.+|+++|-++......+..+| ..+.++|.+.+++
T Consensus 366 As~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP 444 (557)
T KOG3785|consen 366 ASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKP 444 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCc
Confidence 555556667888888888777642 33333444588999999999999999998877333344555 5567889999999
Q ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh
Q 015416 280 DEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 280 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 328 (407)
+.|..++-++... .........++.-+.+.+.+--|.+.|+.++..
T Consensus 445 ~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 445 QLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred hHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 9998887654321 222234556677788899988888888887743
No 120
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.80 E-value=1.9e-06 Score=81.65 Aligned_cols=305 Identities=13% Similarity=0.051 Sum_probs=160.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHH
Q 015416 12 VYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVL 91 (407)
Q Consensus 12 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (407)
.|..|...|+..-|...|..+|+...+. .+.+...+......|++..+++.|..+.-..-+..+ ...-...|....
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeL---Datdaeaaaa~adtyae~~~we~a~~I~l~~~qka~-a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFEL---DATDAEAAAASADTYAEESTWEEAFEICLRAAQKAP-AFACKENWVQRG 569 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC---CchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhch-HHHHHhhhhhcc
Confidence 4566666666666666777777766664 223556666666666666666666666333322221 011112233344
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHH
Q 015416 92 DALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDT-LSFNNLIDQLC 170 (407)
Q Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 170 (407)
-.|...++...|+.-|+...+..|. |...|..++.+|...|++..|+++|.+....+ |+. ..-.-....-+
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~dPk------D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s~y~~fk~A~~ec 641 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTDPK------DYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLSKYGRFKEAVMEC 641 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCCch------hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHhHHHHHHHHHHHH
Confidence 4455566666666666666655444 66677778888888888888888887776653 332 22222223334
Q ss_pred HcCCHHHHHHHHHHHHhCC-----C-------------------------------------------CCCHHHHHHHHH
Q 015416 171 KNGMLAEAEELYGEMSDKG-----V-------------------------------------------NPDEYTYGLLMD 202 (407)
Q Consensus 171 ~~g~~~~a~~~~~~~~~~~-----~-------------------------------------------~p~~~~~~~l~~ 202 (407)
..|.+.+|+..+....... . ..+...|..+..
T Consensus 642 d~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asd 721 (1238)
T KOG1127|consen 642 DNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASD 721 (1238)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhH
Confidence 4566666555554443210 0 001111111111
Q ss_pred HHHhcCChH--H----HHHHHH-HHHHCCC--------------------CCCHHHHHHHHHHHHh--------cCCHHH
Q 015416 203 ACFEVNRVD--D----GATYFR-KMVDSGL--------------------RPNLAVYNRLVGKLVQ--------VGMLDE 247 (407)
Q Consensus 203 ~~~~~g~~~--~----a~~~~~-~~~~~~~--------------------~~~~~~~~~l~~~~~~--------~g~~~~ 247 (407)
+|.-.-..+ . ...++. +....+. ..+..+|..|+..|.+ ..+...
T Consensus 722 ac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~ 801 (1238)
T KOG1127|consen 722 ACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACT 801 (1238)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHH
Confidence 111000000 0 000000 0111110 1123345555544443 122335
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 015416 248 AKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKER 327 (407)
Q Consensus 248 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 327 (407)
|...+.+.++....+..+|+.|... ...|++.-+...|-+.+..+ +.....|..+.-.+.+..+++.|...+.+...
T Consensus 802 Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se--p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 802 AIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE--PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc--ccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 6667776666555566666666655 55567777777666665542 45555677777778888889988888888875
Q ss_pred hhHH
Q 015416 328 EKAE 331 (407)
Q Consensus 328 ~~~~ 331 (407)
..+.
T Consensus 879 LdP~ 882 (1238)
T KOG1127|consen 879 LDPL 882 (1238)
T ss_pred cCch
Confidence 5444
No 121
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.76 E-value=5.1e-07 Score=68.59 Aligned_cols=94 Identities=18% Similarity=0.181 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015416 87 NNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLI 166 (407)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 166 (407)
...++..+...|++++|...|+.+...++. +...+..+..++...|++++|..+++.....+ +.+...+..+.
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la 92 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPY------NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAA 92 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence 333444444444444444444444443322 33344444444444444444444444444332 23334444444
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 015416 167 DQLCKNGMLAEAEELYGEMSD 187 (407)
Q Consensus 167 ~~~~~~g~~~~a~~~~~~~~~ 187 (407)
..+...|++++|...|+...+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 444444444444444444444
No 122
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=1.2e-05 Score=74.96 Aligned_cols=284 Identities=16% Similarity=0.116 Sum_probs=155.9
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhC------CccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLG------GVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKM 82 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 82 (407)
+...|..+.++|.+..+++-|.-++-.|....+ ..+.+...=..........|.+++|+.+|.+....
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~------ 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY------ 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH------
Confidence 456688888888888888877777766643210 01111123333444455678888888888877653
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhh----------
Q 015416 83 SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGE---------- 152 (407)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------- 152 (407)
..|-..|...|.|++|.++-+.--+... ..+|......+-..++.+.|+++|++...
T Consensus 830 -----DLlNKlyQs~g~w~eA~eiAE~~DRiHL--------r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~ 896 (1416)
T KOG3617|consen 830 -----DLLNKLYQSQGMWSEAFEIAETKDRIHL--------RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLK 896 (1416)
T ss_pred -----HHHHHHHHhcccHHHHHHHHhhccceeh--------hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHH
Confidence 3444567778889888887665333322 23677777777888888888888876421
Q ss_pred CC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 015416 153 YR---------CSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDS 223 (407)
Q Consensus 153 ~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 223 (407)
.. -..|...|.....-+-..|+.+.|+.+|..+.+ |..++...+-.|+.++|-++-++-
T Consensus 897 e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es--- 964 (1416)
T KOG3617|consen 897 EYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES--- 964 (1416)
T ss_pred hChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc---
Confidence 11 012334455555555567777777777776654 222333333444444444333221
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---------cCCCCHH-------------------------HHHHH
Q 015416 224 GLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK---------KLKMDDA-------------------------SYKFM 269 (407)
Q Consensus 224 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~-------------------------~~~~l 269 (407)
-|......|.+.|-..|++.+|..+|.+... ....+.. -+...
T Consensus 965 ---gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~A 1041 (1416)
T KOG3617|consen 965 ---GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKA 1041 (1416)
T ss_pred ---ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHH
Confidence 1334444555555555555555555554432 0000000 11222
Q ss_pred HHHHHhcCCHHHHHHHHHH---------HHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015416 270 MKALSDGGKLDEILEIVGG---------ILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 270 ~~~~~~~g~~~~A~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 326 (407)
+..|-+.|.+.+|+++--+ +-+.-.-..++.....-++.+....++++|..++-...
T Consensus 1042 VmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1042 VMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3344455555555544211 11111223455666666777777777777777765544
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.74 E-value=2.8e-05 Score=68.58 Aligned_cols=112 Identities=20% Similarity=0.223 Sum_probs=55.3
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 015416 170 CKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPN-LAVYNRLVGKLVQVGMLDEA 248 (407)
Q Consensus 170 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A 248 (407)
...|.++.|+..++.++.. .+-|+.........+...++.++|.+.++++... .|+ ......+.++|.+.|++.+|
T Consensus 317 ~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 3445555555555555442 1223333344444555555555555555555542 233 33444455555555555555
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015416 249 KSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILE 284 (407)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 284 (407)
+.+++......|.++..|..|.++|...|+..++..
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH
Confidence 555555555555555555555555555555544443
No 124
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=7.5e-06 Score=65.85 Aligned_cols=191 Identities=14% Similarity=0.158 Sum_probs=141.2
Q ss_pred hcCChhhHHHHHHHHHHhhC-C-ccCCc-chHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcC
Q 015416 22 RDGDSDGVFRLFEELKEKLG-G-VVSDG-VVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNG 98 (407)
Q Consensus 22 ~~g~~~~A~~~~~~~~~~~~-~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 98 (407)
...+.++.++++.++....+ + ..++. ..|..++-+....|+.+.|..+++.+..+-| -+...-..-.-.+-..|
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp---~S~RV~~lkam~lEa~~ 100 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFP---GSKRVGKLKAMLLEATG 100 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCC---CChhHHHHHHHHHHHhh
Confidence 45677888888888776522 2 23343 3455677777888999999999999887743 23333333333466789
Q ss_pred CHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 015416 99 KFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEA 178 (407)
Q Consensus 99 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 178 (407)
++++|+++++.+++.++. |..++-.-+.+....|+.-+|++-+....+. +..|...|..+...|...|++.+|
T Consensus 101 ~~~~A~e~y~~lL~ddpt------~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA 173 (289)
T KOG3060|consen 101 NYKEAIEYYESLLEDDPT------DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKA 173 (289)
T ss_pred chhhHHHHHHHHhccCcc------hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHH
Confidence 999999999999988754 6667777777788888888898888888775 467999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHC
Q 015416 179 EELYGEMSDKGVNPDEYTYGLLMDACFEVN---RVDDGATYFRKMVDS 223 (407)
Q Consensus 179 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~ 223 (407)
.-.+++++-.. +.++..|..+...+...| +..-+.++|.+.++.
T Consensus 174 ~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 174 AFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 99999998642 334556666666665554 456788999998884
No 125
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.72 E-value=4.4e-07 Score=69.69 Aligned_cols=132 Identities=19% Similarity=0.295 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHH
Q 015416 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSV 90 (407)
Q Consensus 11 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (407)
..|..++..+ ..++...+...++.+.+..++.+......-.+...+...|++++|...|+.+....++..........+
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 4566666666 478888888888888886433222334455577788888999999999999887652211123355567
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 91 LDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKM 150 (407)
Q Consensus 91 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 150 (407)
..++...|++++|+..++....... ....+...+.+|.+.|++++|...|+..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~-------~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAF-------KALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcch-------HHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7888889999999998866322111 4446777888899999999998888764
No 126
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=2.6e-05 Score=62.80 Aligned_cols=188 Identities=20% Similarity=0.193 Sum_probs=97.4
Q ss_pred CCHHHHHHHHHHHHhCCCC--CCCchh-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhc
Q 015416 61 GMEEEAMECYNEAVGENSS--VKMSAV-ANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQ 137 (407)
Q Consensus 61 g~~~~A~~~~~~~~~~~~~--~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 137 (407)
.+.++.++++..++...+. ..++.. .|..++-+....|+.+.|..+++++...-+. +..+-..-...+-..
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~------S~RV~~lkam~lEa~ 99 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG------SKRVGKLKAMLLEAT 99 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC------ChhHHHHHHHHHHHh
Confidence 4566666666665532210 122222 2333444455566666777777666655432 222222223334445
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 015416 138 GRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYF 217 (407)
Q Consensus 138 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 217 (407)
|++++|+++++.+++.+ |.|..++.--+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-++
T Consensus 100 ~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 100 GNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred hchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 66666666666666654 445555555555555556555666655555544 4445666666666666666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh
Q 015416 218 RKMVDSGLRPNLAVYNRLVGKLVQVG---MLDEAKSFFDIMVK 257 (407)
Q Consensus 218 ~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 257 (407)
++++-.. |.++..+..+...+.-.| +.+.+.++|.+.++
T Consensus 178 EE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 178 EELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 6665421 223334444444433322 33445555555555
No 127
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.70 E-value=7.3e-07 Score=67.72 Aligned_cols=116 Identities=9% Similarity=0.039 Sum_probs=85.9
Q ss_pred HHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015416 32 LFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMK 111 (407)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 111 (407)
.|+.+... .|.+......++..+...|++++|...|+.+...+ +.+...+..+..++...|++++|...+++..
T Consensus 5 ~~~~~l~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 5 TLKDLLGL---DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD---PYNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred hHHHHHcC---ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555553 22345566777788888888888888888888766 4467778888888888888888888888887
Q ss_pred hcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 015416 112 NEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLS 161 (407)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 161 (407)
+..+. +...+..+..+|...|++++|...|+...+.. |+...
T Consensus 79 ~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~ 120 (135)
T TIGR02552 79 ALDPD------DPRPYFHAAECLLALGEPESALKALDLAIEIC--GENPE 120 (135)
T ss_pred hcCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--cccch
Confidence 76543 55577778888888888888888888888754 44443
No 128
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=9.2e-06 Score=66.91 Aligned_cols=263 Identities=12% Similarity=0.085 Sum_probs=184.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHH
Q 015416 49 VYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFN 128 (407)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (407)
-+.+.+..+.+..++..|++++..-.+.. +.+......|..+|....++..|..+++++....|... .--.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~---p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~------qYrl 82 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS---PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELE------QYRL 82 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHH------HHHH
Confidence 46677777788899999999999888876 55778888999999999999999999999987765421 1111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCC-----------------------------C--CCCHHHHHHHHHHHHHcCCHHH
Q 015416 129 VMADGYCGQGRFKDAIEVFRKMGEYR-----------------------------C--SPDTLSFNNLIDQLCKNGMLAE 177 (407)
Q Consensus 129 ~l~~~~~~~g~~~~A~~~~~~~~~~~-----------------------------~--~~~~~~~~~l~~~~~~~g~~~~ 177 (407)
--...+.+.+.+..|+.+...|.... . ..+..+.+.......+.|+++.
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHH
Confidence 23455666777777777776664310 0 0123344555556678899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-------------C---------------H
Q 015416 178 AEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRP-------------N---------------L 229 (407)
Q Consensus 178 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~---------------~ 229 (407)
|.+-|+...+.+--.....|+..+.. .+.++.+.|+++..+++++|++. | .
T Consensus 163 AvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 99999999874433345577755544 57789999999999999988652 1 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Q 015416 230 AVYNRLVGKLVQVGMLDEAKSFFDIMVK--KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKG 307 (407)
Q Consensus 230 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 307 (407)
..+|.-...+.+.|+++.|.+.+..|.. ....|+.|...+...-.. +++.+..+-+.-++..+ |...++|..+.-
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~-~~p~~g~~KLqFLL~~n--PfP~ETFANlLl 318 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMD-ARPTEGFEKLQFLLQQN--PFPPETFANLLL 318 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhccc-CCccccHHHHHHHHhcC--CCChHHHHHHHH
Confidence 1233333446678999999988888765 344577787776554433 44455555556566654 566778888888
Q ss_pred HHhhcCcHHHHHHHHHH
Q 015416 308 ELSKEGREEEVVKLMEK 324 (407)
Q Consensus 308 ~~~~~g~~~~A~~~~~~ 324 (407)
.|++..-++-|..++-+
T Consensus 319 lyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 319 LYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHhhhHHHhHHHHHHhh
Confidence 89999988888877654
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.67 E-value=1.8e-05 Score=69.68 Aligned_cols=242 Identities=13% Similarity=0.108 Sum_probs=149.5
Q ss_pred HHHHHhcC-ChhhHHHHHHHHHH--hhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHH
Q 015416 17 MLGFVRDG-DSDGVFRLFEELKE--KLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDA 93 (407)
Q Consensus 17 i~~~~~~g-~~~~A~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (407)
+..+.+.| +.....+.|+++.. ..++.+|. .. +..=.-..++..+...-+.+...+..-.|+...+...+.+
T Consensus 209 i~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~-yl----~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~ 283 (484)
T COG4783 209 ITTLVRAGYDPQGMPEFFERLADQLRYGGQPPE-YL----LTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRA 283 (484)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHHhcCCCCCh-HH----hcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHH
Confidence 34445555 45667788888775 22232222 11 1111122344444545555554432224444555555554
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 015416 94 LCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNG 173 (407)
Q Consensus 94 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 173 (407)
......-..+-..+.+..+.+ .........-.+...|+++.|+..++.++..- |.|...+......+.+.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~--------~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~n 354 (484)
T COG4783 284 KYEALPNQQAADLLAKRSKRG--------GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEAN 354 (484)
T ss_pred HhccccccchHHHHHHHhCcc--------chHHHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 444333333333333332211 22244455556677888888888888877753 455666677778888888
Q ss_pred CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015416 174 MLAEAEELYGEMSDKGVNPD-EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFF 252 (407)
Q Consensus 174 ~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 252 (407)
+..+|.+.++++... .|+ ......+..+|.+.|++.+|+.+++...... +.|+..|..|.++|...|+..++....
T Consensus 355 k~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 355 KAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred ChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 888888888888874 454 5666677888888888888888888887653 567778888888888888888887777
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 253 DIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
.+... ..|+++.|+..+....+.
T Consensus 432 AE~~~-----------------~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 432 AEGYA-----------------LAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHH-----------------hCCCHHHHHHHHHHHHHh
Confidence 66554 246677777777777665
No 130
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.66 E-value=1.2e-06 Score=64.81 Aligned_cols=106 Identities=14% Similarity=0.099 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHH
Q 015416 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSV 90 (407)
Q Consensus 11 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (407)
.++..++..+.+.|++++|.+.|..+.+..++.+.....+..++.++.+.|+++.|+..|+.+....|+.+....++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45666778888899999999999999886333222345677788899999999999999999887765434345667788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC
Q 015416 91 LDALCNNGKFDEALKLFDRMKNEHNP 116 (407)
Q Consensus 91 ~~~~~~~~~~~~A~~~~~~~~~~~~~ 116 (407)
..++.+.|++++|.+.++++.+..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 88888999999999999998887654
No 131
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.64 E-value=1.5e-06 Score=66.75 Aligned_cols=130 Identities=18% Similarity=0.229 Sum_probs=84.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHH
Q 015416 50 YGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNV 129 (407)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (407)
|..++..+ ..++...+...++.+....|+.+........+...+...|++++|...|+.+....+.+. + ...+...
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~-l--~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE-L--KPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH-H--HHHHHHH
Confidence 33444444 477788888888888776644323344455566777788888888888888877653321 0 2234555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015416 130 MADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEM 185 (407)
Q Consensus 130 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 185 (407)
|..++...|++++|+..++..... ......+...+.+|.+.|++++|...|+..
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 677778888888888887664332 234456667777788888888888877764
No 132
>PF12854 PPR_1: PPR repeat
Probab=98.63 E-value=6.2e-08 Score=53.02 Aligned_cols=32 Identities=50% Similarity=0.947 Sum_probs=18.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015416 154 RCSPDTLSFNNLIDQLCKNGMLAEAEELYGEM 185 (407)
Q Consensus 154 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 185 (407)
|+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 133
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.61 E-value=3.1e-05 Score=73.87 Aligned_cols=222 Identities=16% Similarity=0.085 Sum_probs=161.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 015416 98 GKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAE 177 (407)
Q Consensus 98 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 177 (407)
.+...|+..|-+..+..+. -...|..|+..|+...+...|.+.|++..+.+ +.+...+......|+...+++.
T Consensus 472 K~~~~al~ali~alrld~~------~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~ 544 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVS------LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEE 544 (1238)
T ss_pred hhHHHHHHHHHHHHhcccc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHH
Confidence 3477788888777776543 34489999999999889999999999998876 5677788899999999999999
Q ss_pred HHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015416 178 AEELYGEMSDKG-VNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMV 256 (407)
Q Consensus 178 a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 256 (407)
|..+.-..-+.. ...-...|....-.|...++..++...|+...... +-|...|..++.+|..+|++..|.++|.++.
T Consensus 545 a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 545 AFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred HHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 998843332211 00112233445566788899999999999998754 4477799999999999999999999999988
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 015416 257 KKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDG-----GIEFSEELQEFVKGELSKEGREEEVVKLMEKKER 327 (407)
Q Consensus 257 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 327 (407)
...|.+...-......-+..|++.+|+..+..++... +...-.+++..++..+.-.|-..+|..++++..+
T Consensus 624 ~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie 699 (1238)
T KOG1127|consen 624 LLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIE 699 (1238)
T ss_pred hcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 8555555555555666778899999999998877642 1122233444444455555666677777666543
No 134
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.5e-05 Score=68.65 Aligned_cols=295 Identities=14% Similarity=0.041 Sum_probs=169.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHH
Q 015416 53 LMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMAD 132 (407)
Q Consensus 53 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (407)
....+.+..++..|+..+..++... +.+..-|..-+..+...+++++|.--.++-++..+. ....+.-...
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~---pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~------~~k~~~r~~~ 125 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMC---PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG------FSKGQLREGQ 125 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhC---ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC------ccccccchhh
Confidence 4445566667777777777777665 334555655556666666666666655555444322 1112222233
Q ss_pred HHHhcCCHHHHHHHHH---------------HHhhCC-CCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 015416 133 GYCGQGRFKDAIEVFR---------------KMGEYR-CSPDTLSFNNLI-DQLCKNGMLAEAEELYGEMSDKGVNPDEY 195 (407)
Q Consensus 133 ~~~~~g~~~~A~~~~~---------------~~~~~~-~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 195 (407)
++...++..+|...++ ...... -+|...+|..+- .++.-.|++++|.+.--..++.. ..+..
T Consensus 126 c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~ 204 (486)
T KOG0550|consen 126 CHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAE 204 (486)
T ss_pred hhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhH
Confidence 3333333333332222 111111 123334444332 34556788888877766666542 22333
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-------------HHHHHHHHHHhcCCHHHHHHHHHHHHh----c
Q 015416 196 TYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLA-------------VYNRLVGKLVQVGMLDEAKSFFDIMVK----K 258 (407)
Q Consensus 196 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------------~~~~l~~~~~~~g~~~~A~~~~~~~~~----~ 258 (407)
....-..++...++.+.+...|++.+.. .|+.. .+..=+.-..+.|++..|.+.|...+. .
T Consensus 205 al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n 282 (486)
T KOG0550|consen 205 ALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN 282 (486)
T ss_pred HHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc
Confidence 3334445556677788888888888763 34432 122223345577888899999988887 4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHH-HHHHHH
Q 015416 259 LKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAE-AKAREA 337 (407)
Q Consensus 259 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~ 337 (407)
..++...|.....+..+.|+..+|+.-.+.++..+ +.-...+..-+.++.-.++|++|++-+++....... ...+.+
T Consensus 283 ~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l 360 (486)
T KOG0550|consen 283 KKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTL 360 (486)
T ss_pred cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 44566677777788888899999998888887752 223334555566777788899998888887643222 222233
Q ss_pred HHH-HHHHHHHHHHHHhhcCCCcCC
Q 015416 338 EAA-EAAKRSARAAIASLIPSKFGD 361 (407)
Q Consensus 338 ~~~-~~~~~~~~~~~~~~l~~~~~~ 361 (407)
.++ .....+.+.+.+.+|+.....
T Consensus 361 ~~A~~aLkkSkRkd~ykilGi~~~a 385 (486)
T KOG0550|consen 361 REAQLALKKSKRKDWYKILGISRNA 385 (486)
T ss_pred HHHHHHHHHhhhhhHHHHhhhhhhc
Confidence 333 333345556677777766443
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.61 E-value=2.2e-06 Score=75.95 Aligned_cols=126 Identities=22% Similarity=0.275 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHH
Q 015416 12 VYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVL 91 (407)
Q Consensus 12 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (407)
....|+..+...++++.|+.+|+++.+. ++.....+++.+...++-.+|++++.+.+... +.+...+..-.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~------~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~---p~d~~LL~~Qa 241 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER------DPEVAVLLARVYLLMNEEVEAIRLLNEALKEN---PQDSELLNLQA 241 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc------CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC---CCCHHHHHHHH
Confidence 3455666666778888888888888875 34456667888888888888888888888665 44666666667
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 015416 92 DALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGE 152 (407)
Q Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 152 (407)
..|.+.++++.|+++.+++....|. +-.+|..|..+|.+.|+++.|+-.++.+.-
T Consensus 242 ~fLl~k~~~~lAL~iAk~av~lsP~------~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 242 EFLLSKKKYELALEIAKKAVELSPS------EFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCch------hHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 7788888888888888888877544 555788888888888888888888877654
No 136
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.56 E-value=3.9e-06 Score=62.02 Aligned_cols=104 Identities=12% Similarity=0.092 Sum_probs=72.7
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchH
Q 015416 48 VVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSF 127 (407)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 127 (407)
.++..++..+.+.|++++|...|..+....|+.+.....+..++.++.+.|+++.|...|+.+....+.... ...++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~~ 79 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPK---APDAL 79 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCc---ccHHH
Confidence 356677777788888888888888887765432333456666777888888888888888887765543210 23456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 015416 128 NVMADGYCGQGRFKDAIEVFRKMGEYR 154 (407)
Q Consensus 128 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 154 (407)
..+..++.+.|++++|...++++....
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 677777788888888888888877754
No 137
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=0.00022 Score=68.50 Aligned_cols=231 Identities=15% Similarity=0.224 Sum_probs=106.2
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchH
Q 015416 48 VVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSF 127 (407)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 127 (407)
..|+.+..+-.+.|...+|++-|-++ + |...|..++....+.|.|++-.+.+..+++....| .+-
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika---d-----Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~-------~id 1169 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA---D-----DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP-------YID 1169 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc---C-----CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc-------cch
Confidence 34555555555555555554444322 1 23344455555555555555555544444333222 123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 015416 128 NVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEV 207 (407)
Q Consensus 128 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 207 (407)
..|+-+|++.+++.+.++++ . .|+......++.-|...|.++.|.-+|... .-|..+...+...
T Consensus 1170 ~eLi~AyAkt~rl~elE~fi----~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~L 1233 (1666)
T KOG0985|consen 1170 SELIFAYAKTNRLTELEEFI----A---GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYL 1233 (1666)
T ss_pred HHHHHHHHHhchHHHHHHHh----c---CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHH
Confidence 34445555555444433221 1 144444444555555555555544444322 2344455555555
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015416 208 NRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK-KLKMDDASYKFMMKALSDGGKLDEILEIV 286 (407)
Q Consensus 208 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 286 (407)
|++..|...-+++ .+..+|.....+|...+.+.-| +|.. ..-....-..-++..|...|-+++.+.++
T Consensus 1234 geyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~ 1302 (1666)
T KOG0985|consen 1234 GEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLL 1302 (1666)
T ss_pred HHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHH
Confidence 5555554443332 1334555555555554444332 1222 22224444556666666677777777666
Q ss_pred HHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHH
Q 015416 287 GGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLME 323 (407)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 323 (407)
+..+... ......|..|+-.|.+- ++++..+.++
T Consensus 1303 Ea~LGLE--RAHMgmfTELaiLYsky-kp~km~EHl~ 1336 (1666)
T KOG0985|consen 1303 EAGLGLE--RAHMGMFTELAILYSKY-KPEKMMEHLK 1336 (1666)
T ss_pred Hhhhchh--HHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 6655431 22333455555555443 3344333333
No 138
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=4.8e-05 Score=65.63 Aligned_cols=269 Identities=11% Similarity=0.010 Sum_probs=181.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHH
Q 015416 15 YLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDAL 94 (407)
Q Consensus 15 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (407)
-....+.+..++..|+..+...++. .|.++.-|..-+..+...|+++.|.--.+..+...+++ ........+++
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~---~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~---~k~~~r~~~c~ 127 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDM---CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGF---SKGQLREGQCH 127 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHh---CccchhhhchhHHHHHHHHhHhhcccchhhheecCCCc---cccccchhhhh
Confidence 3445666778899999999999986 34467777778888888899999988887777665432 22444444555
Q ss_pred HhcCCHHHHHHHHH------------HHHhcCCCCCccccccchHHHH-HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 015416 95 CNNGKFDEALKLFD------------RMKNEHNPPKRLAVNLGSFNVM-ADGYCGQGRFKDAIEVFRKMGEYRCSPDTLS 161 (407)
Q Consensus 95 ~~~~~~~~A~~~~~------------~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 161 (407)
...++..+|...|+ .....-+. ..-.|....+..| ..++.-.|++++|.+.--..++.. +.+...
T Consensus 128 ~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s-~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~a 205 (486)
T KOG0550|consen 128 LALSDLIEAEEKLKSKQAYKAANALPTLEKLAPS-HSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEA 205 (486)
T ss_pred hhhHHHHHHHHHhhhhhhhHHhhhhhhhhccccc-ccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHH
Confidence 55555544444433 11111100 0000111223222 456778899999999888877764 234444
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH-------------HHHHHHHHHhcCChHHHHHHHHHHHHC---CC
Q 015416 162 FNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYT-------------YGLLMDACFEVNRVDDGATYFRKMVDS---GL 225 (407)
Q Consensus 162 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-------------~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~ 225 (407)
.-.-..++.-.++.+.+...|++.+.. .|+... +..-.+-..+.|.+..|.+.|.+.+.. +.
T Consensus 206 l~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~ 283 (486)
T KOG0550|consen 206 LYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNK 283 (486)
T ss_pred HHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcccc
Confidence 333344555678899999999999874 344322 112223346789999999999999862 33
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 015416 226 RPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDG 293 (407)
Q Consensus 226 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 293 (407)
.|+...|........+.|+..+|+.--+...+..+.-...+..-..++...++|++|.+-|+...+..
T Consensus 284 ~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 284 KTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred chhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45566788888889999999999999998887544445566677778888999999999999998863
No 139
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.49 E-value=1.7e-06 Score=74.18 Aligned_cols=271 Identities=12% Similarity=0.107 Sum_probs=172.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCC-CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH--h--cCCCCCccccccchHHH
Q 015416 55 KGYFMKGMEEEAMECYNEAVGENSS-VKMSAVANNSVLDALCNNGKFDEALKLFDRMK--N--EHNPPKRLAVNLGSFNV 129 (407)
Q Consensus 55 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~--~~~~~~~~~~~~~~~~~ 129 (407)
.-+++.|+....+.+|+.+++.|.. +..-..+|..|..+|.-.+++++|+++...=+ . .|-... ...+...
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklG----EAKssgN 100 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLG----EAKSSGN 100 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhc----ccccccc
Confidence 3456778888888888888877621 11112345666677777777888877653211 1 111100 2224445
Q ss_pred HHHHHHhcCCHHHHHHHHHH----HhhCCC-CCCHHHHHHHHHHHHHcCC--------------------HHHHHHHHHH
Q 015416 130 MADGYCGQGRFKDAIEVFRK----MGEYRC-SPDTLSFNNLIDQLCKNGM--------------------LAEAEELYGE 184 (407)
Q Consensus 130 l~~~~~~~g~~~~A~~~~~~----~~~~~~-~~~~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~ 184 (407)
|...+--.|.+++|+-.-.+ ..+.|- ......+..+...|...|+ ++.|.++|.+
T Consensus 101 LGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~e 180 (639)
T KOG1130|consen 101 LGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYME 180 (639)
T ss_pred ccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHH
Confidence 66666667777777654322 222220 0123345557777765542 3345555544
Q ss_pred HHh----CCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHH----HCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015416 185 MSD----KGVN-PDEYTYGLLMDACFEVNRVDDGATYFRKMV----DSGLRP-NLAVYNRLVGKLVQVGMLDEAKSFFDI 254 (407)
Q Consensus 185 ~~~----~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 254 (407)
=++ .|-. .-...|..|...|.-.|+++.|+...+.-+ +.|-+. ....+..|..++.-.|+++.|.+.|+.
T Consensus 181 NL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 181 NLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred HHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence 222 2211 123567888888888999999988776543 333222 234788899999999999999999987
Q ss_pred HHh------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 015416 255 MVK------KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD----GGIEFSEELQEFVKGELSKEGREEEVVKLMEK 324 (407)
Q Consensus 255 ~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 324 (407)
... .......+..+|...|.-..++++|+.++.+-+.. ....-....+..|+.++...|..++|+.+.+.
T Consensus 261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 665 23345667888999999999999999998765432 22344566788899999999999999998887
Q ss_pred HHHhh
Q 015416 325 KEREK 329 (407)
Q Consensus 325 ~~~~~ 329 (407)
-.+..
T Consensus 341 hl~~s 345 (639)
T KOG1130|consen 341 HLRSS 345 (639)
T ss_pred HHHHH
Confidence 76544
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.46 E-value=1.3e-05 Score=71.07 Aligned_cols=122 Identities=16% Similarity=0.076 Sum_probs=71.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 015416 199 LLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGK 278 (407)
Q Consensus 199 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 278 (407)
.++..+...++++.|..+++++.+.. |+ ....+++.+...++-.+|.+++.+.+...|.+...+..-...|...++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 34444555556666666666666532 33 233355555555666666666666665555555555555566666666
Q ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015416 279 LDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 279 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 326 (407)
++.|+.+.+++... .|.+...|..|+.+|.+.|+++.|+..+..++
T Consensus 250 ~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 66666666666664 24444566666666666666666666666665
No 141
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.44 E-value=2.2e-05 Score=72.55 Aligned_cols=51 Identities=14% Similarity=0.200 Sum_probs=23.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 015416 271 KALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKK 325 (407)
Q Consensus 271 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 325 (407)
..|-+.|..+..+++..+-.. ..-..+...++.-|...|+.+.|..-|-+.
T Consensus 858 qmydk~~~~ddmirlv~k~h~----d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 858 QMYDKHGLDDDMIRLVEKHHG----DHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred HHHHhhCcchHHHHHHHHhCh----hhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 344444444444444433211 122334444555566666666666555443
No 142
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.42 E-value=0.00051 Score=65.20 Aligned_cols=222 Identities=14% Similarity=0.164 Sum_probs=114.8
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcC
Q 015416 59 MKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQG 138 (407)
Q Consensus 59 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 138 (407)
..+++.+|+....++.+..|+ .+...++.. -...+.|+.++|..+++.....++. |..+...+-.+|...+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn-~~~a~vLka--Lsl~r~gk~~ea~~~Le~~~~~~~~------D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPN-ALYAKVLKA--LSLFRLGKGDEALKLLEALYGLKGT------DDLTLQFLQNVYRDLG 91 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCC-cHHHHHHHH--HHHHHhcCchhHHHHHhhhccCCCC------chHHHHHHHHHHHHHh
Confidence 446666777766666665432 111112222 2245666777777666655544333 4556666666777777
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------
Q 015416 139 RFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNR--------- 209 (407)
Q Consensus 139 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--------- 209 (407)
+.++|..+|++..... |+......+..+|.+.+.+.+-.+.--++.+. ++-.+..|-++++.+...-.
T Consensus 92 ~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i 168 (932)
T KOG2053|consen 92 KLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPI 168 (932)
T ss_pred hhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccch
Confidence 7777777777766543 55555555666666666665444433333332 23334445455554443211
Q ss_pred -hHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHhcC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015416 210 -VDDGATYFRKMVDSG-LRPNLAVYNRLVGKLVQVGMLDEAKSFFDI-MVKKL-KMDDASYKFMMKALSDGGKLDEILEI 285 (407)
Q Consensus 210 -~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 285 (407)
..-|.+.++.+.+.+ ---+..-...-...+...|++++|.+++.. ..+.. +.+...-+.-+..+...++|.+..++
T Consensus 169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l 248 (932)
T KOG2053|consen 169 LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFEL 248 (932)
T ss_pred hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHH
Confidence 123445555555432 111111222223334556677777777732 22222 22333344555666666777777776
Q ss_pred HHHHHhc
Q 015416 286 VGGILDD 292 (407)
Q Consensus 286 ~~~~~~~ 292 (407)
..+++..
T Consensus 249 ~~~Ll~k 255 (932)
T KOG2053|consen 249 SSRLLEK 255 (932)
T ss_pred HHHHHHh
Confidence 6666665
No 143
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.42 E-value=8.6e-05 Score=69.59 Aligned_cols=243 Identities=16% Similarity=0.199 Sum_probs=166.1
Q ss_pred CHHHHHHHH--HHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-------C
Q 015416 9 DPVVYSYLM--LGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENS-------S 79 (407)
Q Consensus 9 ~~~~~~~li--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~ 79 (407)
|..|-..++ +.|...|+.+.|.+-.+-+.. ..+|..+.+.|.+..+.+-|.-.+-.|..... .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS--------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS--------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh--------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 444444444 345677999998887776654 45899999999999888888776665543210 0
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 015416 80 VKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDT 159 (407)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 159 (407)
-.++ ..-..+.-.....|-.++|..+|++-.+ |..|=..|-..|.|++|.++-+.--... =-
T Consensus 797 q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR--------------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr 858 (1416)
T KOG3617|consen 797 QNGE-EDEAKVAVLAIELGMLEEALILYRQCKR--------------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LR 858 (1416)
T ss_pred hCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH--------------HHHHHHHHHhcccHHHHHHHHhhcccee---hh
Confidence 0111 2222233335678999999999998764 4456667888999999998876543321 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh----------CC---------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015416 160 LSFNNLIDQLCKNGMLAEAEELYGEMSD----------KG---------VNPDEYTYGLLMDACFEVNRVDDGATYFRKM 220 (407)
Q Consensus 160 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------~~---------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 220 (407)
.||......+-..++.+.|+++|++... .. -..|...|......+-..|+.+.|+.+|..+
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 3566666677777888888888876321 10 1224455666666666778888888888776
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 221 VDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 221 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
.+ |..+++..|-+|+.++|-++-++- .|..+...+.+.|-..|++.+|+.+|.++..
T Consensus 939 ~D---------~fs~VrI~C~qGk~~kAa~iA~es-----gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 939 KD---------YFSMVRIKCIQGKTDKAARIAEES-----GDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hh---------hhhheeeEeeccCchHHHHHHHhc-----ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 54 556777778888888888777653 3666777889999999999999998887643
No 144
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.40 E-value=0.0011 Score=57.27 Aligned_cols=294 Identities=14% Similarity=0.119 Sum_probs=196.2
Q ss_pred HHHHHHHHHh--cCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHH--HHcCCHHHHHHHHHHHHhCCCCCCCchhhHH
Q 015416 13 YSYLMLGFVR--DGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGY--FMKGMEEEAMECYNEAVGENSSVKMSAVANN 88 (407)
Q Consensus 13 ~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
|..|-.++.. .||-..|.++-.+..+. +..|......|+.+- .-.|+++.|.+-|+.|.... ..-..-..
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l---lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP---EtRllGLR 158 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL---LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP---ETRLLGLR 158 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh---hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh---HHHHHhHH
Confidence 3444444433 46777777776665542 344666666665544 34699999999999998531 11112223
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCCHH--HHHHH
Q 015416 89 SVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYR-CSPDTL--SFNNL 165 (407)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~--~~~~l 165 (407)
.|.-.-.+.|..+.|.++-+..-...+. -.+.+...+...+..|+|+.|+++++.-.... +.++.. .-..|
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~Ap~------l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvL 232 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKAPQ------LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVL 232 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhccC------CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHH
Confidence 3333345678899999988888776544 55688889999999999999999998765432 233432 11222
Q ss_pred HHHHH---HcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 015416 166 IDQLC---KNGMLAEAEELYGEMSDKGVNPDE-YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQ 241 (407)
Q Consensus 166 ~~~~~---~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 241 (407)
+.+-. -.-+...|...-.+..+ +.||. ..-.....++.+.|++.++-.+++.+.+....| .++ ..|..
T Consensus 233 LtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP--~ia----~lY~~ 304 (531)
T COG3898 233 LTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP--DIA----LLYVR 304 (531)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh--HHH----HHHHH
Confidence 22211 12356667766666665 56663 334456678899999999999999999865444 333 33444
Q ss_pred cCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhc-CcHHH
Q 015416 242 VGMLDEAKSFFDIMVK---KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKE-GREEE 317 (407)
Q Consensus 242 ~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~ 317 (407)
..--+.+..-+++... ..+.+..+...+..+-...|++..|..--+..... .|....|..|++.-.-. |+-.+
T Consensus 305 ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~---~pres~~lLlAdIeeAetGDqg~ 381 (531)
T COG3898 305 ARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE---APRESAYLLLADIEEAETGDQGK 381 (531)
T ss_pred hcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh---CchhhHHHHHHHHHhhccCchHH
Confidence 3344455555555544 44456788888999999999999999888777664 79999999998876555 99999
Q ss_pred HHHHHHHHHHhh
Q 015416 318 VVKLMEKKEREK 329 (407)
Q Consensus 318 A~~~~~~~~~~~ 329 (407)
+..++-+..+..
T Consensus 382 vR~wlAqav~AP 393 (531)
T COG3898 382 VRQWLAQAVKAP 393 (531)
T ss_pred HHHHHHHHhcCC
Confidence 999998877543
No 145
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.39 E-value=3e-05 Score=58.52 Aligned_cols=99 Identities=9% Similarity=-0.095 Sum_probs=86.0
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccc
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLG 125 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (407)
+......+...+...|++++|..+|+.+...+ +.+..-|..|..++...|++.+|+..|.......+. ++.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D---p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d------dp~ 104 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD---AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID------APQ 104 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC------Cch
Confidence 44566677788889999999999999999887 557888899999999999999999999999888754 777
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEY 153 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 153 (407)
.+..+..++...|+.+.|.+.|+..+..
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8889999999999999999999988764
No 146
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.39 E-value=3.7e-06 Score=72.22 Aligned_cols=266 Identities=14% Similarity=0.128 Sum_probs=176.5
Q ss_pred HHHHhcCChhhHHHHHHHHHHhhCCccCC----cchHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCCCCCchhhHHH
Q 015416 18 LGFVRDGDSDGVFRLFEELKEKLGGVVSD----GVVYGSLMKGYFMKGMEEEAMECYNEAVG----ENSSVKMSAVANNS 89 (407)
Q Consensus 18 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~~ 89 (407)
.-+++.|+....+.+|+..++. |. .| ..+|..|..+|.-.+++.+|+++...=+. .+. -.-...+...
T Consensus 25 ERLck~gdcraGv~ff~aA~qv--GT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgd-klGEAKssgN 100 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQV--GT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGD-KLGEAKSSGN 100 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHh--cc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcc-hhcccccccc
Confidence 4578999999999999999986 42 23 34678889999999999999987643211 110 0112334445
Q ss_pred HHHHHHhcCCHHHHHHHHHHH----HhcCCCCCccccccchHHHHHHHHHhcCC--------------------HHHHHH
Q 015416 90 VLDALCNNGKFDEALKLFDRM----KNEHNPPKRLAVNLGSFNVMADGYCGQGR--------------------FKDAIE 145 (407)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------------~~~A~~ 145 (407)
|...+--.|.+++|+-+..+- .+.|-... ...++..|...|...|+ ++.|.+
T Consensus 101 LGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~----e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~ 176 (639)
T KOG1130|consen 101 LGNTLKVKGAFDEALTCCFRHLDFARELGDRVL----ESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVK 176 (639)
T ss_pred ccchhhhhcccchHHHHHHHHhHHHHHHhHHHh----hhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHH
Confidence 666677778888877654432 22221110 33466667888876664 344555
Q ss_pred HHHHHhh----CCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHHhcCChHHHHH
Q 015416 146 VFRKMGE----YRC-SPDTLSFNNLIDQLCKNGMLAEAEELYGEMS----DKGVN-PDEYTYGLLMDACFEVNRVDDGAT 215 (407)
Q Consensus 146 ~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~ 215 (407)
+|.+-++ .|- ...-..|..|...|.-.|+++.|+...+.-+ +.|-+ .....+..+..++.-.|+++.|.+
T Consensus 177 fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~e 256 (639)
T KOG1130|consen 177 FYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIE 256 (639)
T ss_pred HHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHH
Confidence 5544222 110 0112356667777777889999987765432 33322 224678889999999999999999
Q ss_pred HHHHHHH----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015416 216 YFRKMVD----SGL-RPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK------KLKMDDASYKFMMKALSDGGKLDEILE 284 (407)
Q Consensus 216 ~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~ 284 (407)
.|+.... .|- ........+|...|.-...+++|+.++.+-+. ...-...++.+|..+|...|..++|+.
T Consensus 257 hYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~ 336 (639)
T KOG1130|consen 257 HYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY 336 (639)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH
Confidence 9987652 221 12344777899999999999999999987765 223356788999999999999999988
Q ss_pred HHHHHHh
Q 015416 285 IVGGILD 291 (407)
Q Consensus 285 ~~~~~~~ 291 (407)
+.+..++
T Consensus 337 fae~hl~ 343 (639)
T KOG1130|consen 337 FAELHLR 343 (639)
T ss_pred HHHHHHH
Confidence 7766543
No 147
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.002 Score=62.28 Aligned_cols=282 Identities=14% Similarity=0.154 Sum_probs=181.0
Q ss_pred HHHHHHHHHHHhcCChhhHH-----------HHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 015416 11 VVYSYLMLGFVRDGDSDGVF-----------RLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSS 79 (407)
Q Consensus 11 ~~~~~li~~~~~~g~~~~A~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 79 (407)
..|-.+.+.+.+..|.+--. ++.+++.+..-....|+...+....++...+-+.+-++++++..-.++.
T Consensus 937 SlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~ 1016 (1666)
T KOG0985|consen 937 SLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSV 1016 (1666)
T ss_pred hHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcc
Confidence 34555566666666654333 3445555541112346677788889999999999999999998865544
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCC-----
Q 015416 80 VKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYR----- 154 (407)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 154 (407)
+..+...-+.|+-...+. +.....+..+++-.-+.+ .+.......+-+++|..+|++.-..+
T Consensus 1017 Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~------------~ia~iai~~~LyEEAF~ifkkf~~n~~A~~V 1083 (1666)
T KOG0985|consen 1017 FSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAP------------DIAEIAIENQLYEEAFAIFKKFDMNVSAIQV 1083 (1666)
T ss_pred cccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCch------------hHHHHHhhhhHHHHHHHHHHHhcccHHHHHH
Confidence 444445555555544444 334455555555432211 12233444444555555554431100
Q ss_pred ----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 015416 155 ----------------CSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFR 218 (407)
Q Consensus 155 ----------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 218 (407)
--..+..|..+..+-.+.|...+|++-|-+. .|+..|..++....+.|.+++-.+++.
T Consensus 1084 Lie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~ 1157 (1666)
T KOG0985|consen 1084 LIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLL 1157 (1666)
T ss_pred HHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 0124557788888888888888887766432 256778888888889999988888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 015416 219 KMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFS 298 (407)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 298 (407)
.+.+..-.|. +=..|+-+|++.++..+-+.++ ..|+......++.-|...|.++.|.-+|..+
T Consensus 1158 MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------- 1220 (1666)
T KOG0985|consen 1158 MARKKVREPY--IDSELIFAYAKTNRLTELEEFI------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------- 1220 (1666)
T ss_pred HHHHhhcCcc--chHHHHHHHHHhchHHHHHHHh------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------
Confidence 7776544443 4456788888888877655443 3467777788888888888888887776644
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 299 EELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 299 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
..|..|+..+...|.+..|...-++....+
T Consensus 1221 -SN~a~La~TLV~LgeyQ~AVD~aRKAns~k 1250 (1666)
T KOG0985|consen 1221 -SNFAKLASTLVYLGEYQGAVDAARKANSTK 1250 (1666)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHhhhccchh
Confidence 236778888888899998888777765433
No 148
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.39 E-value=0.00021 Score=66.33 Aligned_cols=190 Identities=17% Similarity=0.221 Sum_probs=104.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 015416 96 NNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGML 175 (407)
Q Consensus 96 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 175 (407)
....|.+|+.+++.+..... -+.-|..+.+.|...|+++.|.++|-+.- .++-.|..|.+.|+|
T Consensus 744 ~akew~kai~ildniqdqk~-------~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKT-------ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhcc-------ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 34445555555554444322 12234555566666666666666554321 123345556666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 176 AEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIM 255 (407)
Q Consensus 176 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 255 (407)
..|.++-.+... .......|..-..-+-..|++.+|+++|-.+. .|+ ..++.|-+.|..+..+++..+.
T Consensus 808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHh
Confidence 666655544432 22233444444444555666666666554332 232 2355666666666666665543
Q ss_pred HhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 015416 256 VKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEK 324 (407)
Q Consensus 256 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 324 (407)
... .-..|...+..-|-..|+...|...|-++-+ |..-+..|...+-|++|.++-+.
T Consensus 877 h~d--~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 877 HGD--HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred Chh--hhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhc
Confidence 221 1234666777778888888888887765533 44455667777888888776543
No 149
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.38 E-value=3.6e-05 Score=58.11 Aligned_cols=95 Identities=8% Similarity=-0.076 Sum_probs=56.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 015416 197 YGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDG 276 (407)
Q Consensus 197 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 276 (407)
...+...+...|++++|..+|+.+.... +-+..-|..|+.++-..|++++|+..|.......+.++..+..+..++...
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 3344445556666666666666666532 223445556666666666666666666666665555666666666666666
Q ss_pred CCHHHHHHHHHHHHhc
Q 015416 277 GKLDEILEIVGGILDD 292 (407)
Q Consensus 277 g~~~~A~~~~~~~~~~ 292 (407)
|+.+.|.+.|+.++..
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6666666666666554
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.32 E-value=1.1e-05 Score=56.52 Aligned_cols=95 Identities=25% Similarity=0.291 Sum_probs=61.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHH
Q 015416 13 YSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLD 92 (407)
Q Consensus 13 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (407)
+..+...+...|++++|...++.+.+. .+.+..++..++.++...+++++|.+.|+...... +.+..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~ 76 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL---DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD---PDNAKAYYNLGL 76 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CcchhHHHHHHH
Confidence 445566666677777777777777663 23344566667777777777777777777776654 333456666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 015416 93 ALCNNGKFDEALKLFDRMKNE 113 (407)
Q Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (407)
++...|+++.|...+....+.
T Consensus 77 ~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 77 AYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHhHHHHHHHHHHHHcc
Confidence 777777777777777666554
No 151
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.30 E-value=0.0006 Score=57.09 Aligned_cols=188 Identities=10% Similarity=-0.018 Sum_probs=100.8
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccc
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLG 125 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (407)
++..+...+..+...|++++|+..|+.+....|.-+.-....-.++.++.+.++++.|...|++.++..|..+. ...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~---~~~ 107 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN---IDY 107 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc---hHH
Confidence 34444455666667788888888888888776543222333456677778888888888888888877665444 333
Q ss_pred hHHHHHHHHHhcC---------------C---HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015416 126 SFNVMADGYCGQG---------------R---FKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSD 187 (407)
Q Consensus 126 ~~~~l~~~~~~~g---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 187 (407)
++-.++.++...+ + ..+|+..|+.+++.- |++.- ..+|...+..+..
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y--P~S~y-------------a~~A~~rl~~l~~ 172 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY--PNSQY-------------TTDATKRLVFLKD 172 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC--cCChh-------------HHHHHHHHHHHHH
Confidence 4444443321111 2 234556666666542 34321 2222222222221
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 188 KGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDS--GLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIM 255 (407)
Q Consensus 188 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 255 (407)
. .-. .-..+...|.+.|.+..|..-++.+++. +.+........++.+|...|..++|..+...+
T Consensus 173 ~---la~-~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 173 R---LAK-YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred H---HHH-HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 0 000 1113455566666666666666666643 11122335555666666666666666655544
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.29 E-value=1.6e-05 Score=55.67 Aligned_cols=91 Identities=20% Similarity=0.262 Sum_probs=41.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 015416 199 LLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGK 278 (407)
Q Consensus 199 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 278 (407)
.++..+...|++++|...++.+.+.. +.+...+..++..+...|++++|...++......+.+..++..++..+...|+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 34444444555555555555544421 12223444444444444555555555544444333333444444444444455
Q ss_pred HHHHHHHHHHHH
Q 015416 279 LDEILEIVGGIL 290 (407)
Q Consensus 279 ~~~A~~~~~~~~ 290 (407)
++.|...+....
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 555544444443
No 153
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.26 E-value=2.9e-06 Score=58.21 Aligned_cols=80 Identities=20% Similarity=0.300 Sum_probs=49.2
Q ss_pred cCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHH
Q 015416 242 VGMLDEAKSFFDIMVKKLKM--DDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVV 319 (407)
Q Consensus 242 ~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 319 (407)
.|+++.|+.+++++.+..+. +...+..++.+|.+.|++++|+.++++ .... +.+......++.++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46677777777777774332 344555567777777777777777776 2221 223344445577777777777777
Q ss_pred HHHHH
Q 015416 320 KLMEK 324 (407)
Q Consensus 320 ~~~~~ 324 (407)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77765
No 154
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.25 E-value=3.3e-05 Score=66.32 Aligned_cols=129 Identities=14% Similarity=0.097 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 015416 196 TYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQ-VGMLDEAKSFFDIMVKKLKMDDASYKFMMKALS 274 (407)
Q Consensus 196 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 274 (407)
+|..++....+.+..+.|..+|.++.+.+ ..+..+|...+..-.. .++.+.|.++|+...+.++.+...|...+..+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 56666666666666777777777776432 2234455555554333 445555777777777766667777777777777
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcH---HHHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 015416 275 DGGKLDEILEIVGGILDDGGIEFSE---ELQEFVKGELSKEGREEEVVKLMEKKER 327 (407)
Q Consensus 275 ~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 327 (407)
..|+.+.|..+|++.+.. +++.. .+|...++.-.+.|+.+.+.++.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777664 22222 3666666666666777777766666654
No 155
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.25 E-value=0.00082 Score=51.80 Aligned_cols=155 Identities=12% Similarity=0.049 Sum_probs=115.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 015416 167 DQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLD 246 (407)
Q Consensus 167 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 246 (407)
.+..+.=+++....-..+-.+ ..|+......|..+....|+..+|...|++....-+..|......+.++....+++.
T Consensus 64 ~a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A 141 (251)
T COG4700 64 MALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFA 141 (251)
T ss_pred HHHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHH
Confidence 333344444444433333333 567888888899999999999999999999887555667888888999999999999
Q ss_pred HHHHHHHHHHhcCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 015416 247 EAKSFFDIMVKKLK--MDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEK 324 (407)
Q Consensus 247 ~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 324 (407)
.|...++++.+-.| -++.+...+.+.+...|++..|...|+.+... -|...........+.++|+.+++..-+..
T Consensus 142 ~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 142 AAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 99999999888221 13455677888999999999999999999885 56677666677778899988887755544
Q ss_pred HH
Q 015416 325 KE 326 (407)
Q Consensus 325 ~~ 326 (407)
+-
T Consensus 219 v~ 220 (251)
T COG4700 219 VV 220 (251)
T ss_pred HH
Confidence 43
No 156
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.24 E-value=4.1e-06 Score=57.50 Aligned_cols=82 Identities=22% Similarity=0.346 Sum_probs=49.1
Q ss_pred cCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHH
Q 015416 23 DGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDE 102 (407)
Q Consensus 23 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 102 (407)
.|+++.|+.+++++.+..+. .++...+..++.+|.+.|++++|+.++++ ...+ +.+......++.+|.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~---~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-NPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD---PSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-THHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH---HCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC---CCCHHHHHHHHHHHHHhCCHHH
Confidence 46777777777777775221 11344455567777777777777777766 3322 2233444455677777777777
Q ss_pred HHHHHHH
Q 015416 103 ALKLFDR 109 (407)
Q Consensus 103 A~~~~~~ 109 (407)
|+++|++
T Consensus 77 Ai~~l~~ 83 (84)
T PF12895_consen 77 AIKALEK 83 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 7777764
No 157
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.22 E-value=7.2e-05 Score=66.61 Aligned_cols=90 Identities=10% Similarity=0.007 Sum_probs=55.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 015416 202 DACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDE 281 (407)
Q Consensus 202 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 281 (407)
..+...|+++.|+..|+++++.. +.+...|..++.+|...|++++|+..+++++...+.+...|..++.+|...|++++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 34445566666666666666532 23445566666666666666666666666666555566666666666666666666
Q ss_pred HHHHHHHHHhc
Q 015416 282 ILEIVGGILDD 292 (407)
Q Consensus 282 A~~~~~~~~~~ 292 (407)
|+..|++++..
T Consensus 89 A~~~~~~al~l 99 (356)
T PLN03088 89 AKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHh
Confidence 66666666654
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.22 E-value=4.4e-05 Score=67.99 Aligned_cols=93 Identities=14% Similarity=0.030 Sum_probs=54.2
Q ss_pred HHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHh
Q 015416 17 MLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCN 96 (407)
Q Consensus 17 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (407)
...+...|+++.|+++|+++++. .+.+...|..+..+|...|++++|+..+++++..+ +.+...|..++.+|..
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~---P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELD---PSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHH
Confidence 34445556666666666666654 23355556666666666666666666666666554 3345555566666666
Q ss_pred cCCHHHHHHHHHHHHhcCC
Q 015416 97 NGKFDEALKLFDRMKNEHN 115 (407)
Q Consensus 97 ~~~~~~A~~~~~~~~~~~~ 115 (407)
.|++++|+..|++.++..+
T Consensus 83 lg~~~eA~~~~~~al~l~P 101 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAP 101 (356)
T ss_pred hCCHHHHHHHHHHHHHhCC
Confidence 6666666666666665543
No 159
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.22 E-value=3.7e-05 Score=64.80 Aligned_cols=107 Identities=13% Similarity=0.077 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHH
Q 015416 10 PVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNS 89 (407)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (407)
...|...+..+.+.|++++|+..|+.+.+.+|+.+-.+.++..++.+|...|++++|+..|+.+....|+-+....++..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 34466666666778999999999999999754433234678889999999999999999999999877655556777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 015416 90 VLDALCNNGKFDEALKLFDRMKNEHNP 116 (407)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~~~~~~~~ 116 (407)
++.++...|+.+.|..+|+.+++..+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 888898999999999999999988655
No 160
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.21 E-value=0.00018 Score=62.05 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHH
Q 015416 12 VYSYLMLGFVRDGDSDGVFRLFEELKE 38 (407)
Q Consensus 12 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 38 (407)
.|......|...|++++|.+.|.....
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~ 63 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAAD 63 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 466666667777777777777776654
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.19 E-value=8.8e-05 Score=58.82 Aligned_cols=101 Identities=21% Similarity=0.207 Sum_probs=53.8
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchH
Q 015416 48 VVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSF 127 (407)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 127 (407)
..+..++..+...|++++|+..|++++...++.......+..++.++.+.|++++|...+.++....+. +...+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~ 109 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK------QPSAL 109 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------cHHHH
Confidence 344555555555555555555555555433211111234555555555555555555555555554332 33345
Q ss_pred HHHHHHHHhcCC--------------HHHHHHHHHHHhhCC
Q 015416 128 NVMADGYCGQGR--------------FKDAIEVFRKMGEYR 154 (407)
Q Consensus 128 ~~l~~~~~~~g~--------------~~~A~~~~~~~~~~~ 154 (407)
..++.+|...|+ +++|.+++++....+
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 555555555554 677777777777775
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.18 E-value=7.3e-05 Score=59.28 Aligned_cols=119 Identities=18% Similarity=0.186 Sum_probs=82.9
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 015416 83 SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSF 162 (407)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 162 (407)
....+..++..+...|++++|...|+++.+..+.+.. ....+..++.++.+.|++++|...+.+........ ...+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~ 109 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND---RSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ-PSAL 109 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHH
Confidence 4556777788888888888888888888876544321 23477888888888888888888888887765443 4556
Q ss_pred HHHHHHHHHcCC--------------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 015416 163 NNLIDQLCKNGM--------------LAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNR 209 (407)
Q Consensus 163 ~~l~~~~~~~g~--------------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 209 (407)
..++.++...|+ +++|.+++++.... .|+. |..++..+...|+
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~--~p~~--~~~~~~~~~~~~~ 166 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL--APNN--YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh--Cchh--HHHHHHHHHhcCc
Confidence 666777777666 57788888888763 3332 5555555555544
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.17 E-value=2.9e-05 Score=61.31 Aligned_cols=103 Identities=15% Similarity=-0.003 Sum_probs=67.5
Q ss_pred hhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 015416 26 SDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALK 105 (407)
Q Consensus 26 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 105 (407)
+..+...+..+.+.. +..-....|..++..+...|++++|+..|++++...++......++..+..++...|++++|+.
T Consensus 15 ~~~~~~~l~~~~~~~-~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~ 93 (168)
T CHL00033 15 FTIVADILLRILPTT-SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE 93 (168)
T ss_pred cccchhhhhHhccCC-chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 444455555543220 2222355677788888888999999999988876643222234578888888888899999999
Q ss_pred HHHHHHhcCCCCCccccccchHHHHHHHHH
Q 015416 106 LFDRMKNEHNPPKRLAVNLGSFNVMADGYC 135 (407)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 135 (407)
.++++....+. ....+..+...+.
T Consensus 94 ~~~~Al~~~~~------~~~~~~~la~i~~ 117 (168)
T CHL00033 94 YYFQALERNPF------LPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHhCcC------cHHHHHHHHHHHH
Confidence 98888876433 3345556666665
No 164
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.17 E-value=0.0012 Score=55.27 Aligned_cols=185 Identities=8% Similarity=0.020 Sum_probs=121.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 015416 84 AVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFN 163 (407)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 163 (407)
...+-.....+...|++++|...|+.+....+.+.. -....-.++.+|.+.++++.|...+++.++....-...-+.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~---a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPY---SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 333444556677899999999999999998776421 22344678889999999999999999998764333333322
Q ss_pred HHHHHHH--HcC---------------C---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 015416 164 NLIDQLC--KNG---------------M---LAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDS 223 (407)
Q Consensus 164 ~l~~~~~--~~g---------------~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 223 (407)
....+.+ ..+ + ...|+..|+.+++. -|+.. -..+|...+..+...
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~-------------ya~~A~~rl~~l~~~ 173 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQ-------------YTTDATKRLVFLKDR 173 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCCh-------------hHHHHHHHHHHHHHH
Confidence 2222222 111 2 23566777777763 34431 123344333333321
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015416 224 GLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK---LKMDDASYKFMMKALSDGGKLDEILEIVGGIL 290 (407)
Q Consensus 224 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 290 (407)
. ...-..++..|.+.|.+..|..-++.+++. .+....+...++.+|...|..++|......+.
T Consensus 174 ---l-a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 ---L-AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ---H-HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0 011225778899999999999999999983 34456778889999999999999998877654
No 165
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.16 E-value=0.00013 Score=67.84 Aligned_cols=137 Identities=12% Similarity=0.036 Sum_probs=80.3
Q ss_pred CccCCcchHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcC--------CHHHHHHHHH
Q 015416 42 GVVSDGVVYGSLMKGYFMK-----GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNG--------KFDEALKLFD 108 (407)
Q Consensus 42 ~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~ 108 (407)
..+.+...|...+++.... ++...|+.+|+++++.+|+ ....|..+..++.... +...+.+...
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~---~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD---FTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3456777888877775432 2367889999999988743 4556655544443221 1223333333
Q ss_pred HHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015416 109 RMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSD 187 (407)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 187 (407)
+.......+. +..+|..+...+...|++++|...+++.+..+ |+...|..++..+...|++++|...|+++..
T Consensus 409 ~a~al~~~~~----~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 409 NIVALPELNV----LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HhhhcccCcC----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3222211111 33456556555556677777777777766654 5666666667777777777777777766665
No 166
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.15 E-value=0.0082 Score=57.43 Aligned_cols=226 Identities=15% Similarity=0.175 Sum_probs=146.0
Q ss_pred HhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHH--HHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcC
Q 015416 21 VRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMK--GYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNG 98 (407)
Q Consensus 21 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 98 (407)
...+++.+|+....++.++.| +. .|..++. .+.+.|+.++|..+++...... ..|..+...+-.+|...+
T Consensus 20 ld~~qfkkal~~~~kllkk~P----n~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~---~~D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHP----NA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK---GTDDLTLQFLQNVYRDLG 91 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCC----Cc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC---CCchHHHHHHHHHHHHHh
Confidence 456789999999999888632 22 2333333 4568899999998888776655 337888888899999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-C---
Q 015416 99 KFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNG-M--- 174 (407)
Q Consensus 99 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~--- 174 (407)
+.++|..+|++.....| +......+..+|.+-+.+.+-.+.--++-+. .+.+...+-.+++.+...- .
T Consensus 92 ~~d~~~~~Ye~~~~~~P-------~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~ 163 (932)
T KOG2053|consen 92 KLDEAVHLYERANQKYP-------SEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENE 163 (932)
T ss_pred hhhHHHHHHHHHHhhCC-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcc
Confidence 99999999999987654 3335556677888877776654444444332 2334444444555544321 1
Q ss_pred ------HHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 015416 175 ------LAEAEELYGEMSDKG-VNPDEYTYGLLMDACFEVNRVDDGATYFR-KMVDSGLRPNLAVYNRLVGKLVQVGMLD 246 (407)
Q Consensus 175 ------~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 246 (407)
..-|...++.+.+.+ .--+..-...-...+...|++++|+.++. ...+.-..-+...-+.-+..+...++|.
T Consensus 164 ~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~ 243 (932)
T KOG2053|consen 164 LLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQ 243 (932)
T ss_pred cccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChH
Confidence 234556666666543 21222233334445567788999999984 4444333334445556677788888999
Q ss_pred HHHHHHHHHHhcCCCC
Q 015416 247 EAKSFFDIMVKKLKMD 262 (407)
Q Consensus 247 ~A~~~~~~~~~~~~~~ 262 (407)
+..++-.++....+.|
T Consensus 244 ~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 244 ELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHHHHHhCCcc
Confidence 9888888888855555
No 167
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.14 E-value=0.00038 Score=56.76 Aligned_cols=64 Identities=22% Similarity=0.303 Sum_probs=45.2
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 015416 16 LMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSS 79 (407)
Q Consensus 16 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 79 (407)
....+...|++.+|...|+.+....|+.+--..+...++.++.+.|+++.|...|++.+...|.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 4455667888888888888888875554445566677888888888888888888888877654
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.12 E-value=0.00013 Score=57.56 Aligned_cols=97 Identities=15% Similarity=0.093 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHH
Q 015416 10 PVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNS 89 (407)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (407)
...|..+...+...|++++|+..|+......++......+|..+..++...|++++|+..+++++... +....++..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~---~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN---PFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCcHHHHHH
Confidence 45577888888899999999999999987522211123588999999999999999999999999876 334566777
Q ss_pred HHHHHH-------hcCCHHHHHHHHHH
Q 015416 90 VLDALC-------NNGKFDEALKLFDR 109 (407)
Q Consensus 90 l~~~~~-------~~~~~~~A~~~~~~ 109 (407)
+..++. ..|+++.|...+++
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 777777 66776655544443
No 169
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.12 E-value=4.9e-06 Score=46.11 Aligned_cols=33 Identities=30% Similarity=0.664 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCC
Q 015416 12 VYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSD 46 (407)
Q Consensus 12 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 46 (407)
+||++|.+|++.|++++|.++|++|.+. |+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~--g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER--GIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCC
Confidence 5677777777777777777777777766 66665
No 170
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.10 E-value=0.00028 Score=51.42 Aligned_cols=100 Identities=27% Similarity=0.214 Sum_probs=59.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHH
Q 015416 50 YGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNV 129 (407)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (407)
...+..++-..|+.++|+.+|++.+..+..-..-...+..+...+...|++++|..+|++.....+... . +......
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~-~--~~~l~~f 80 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDE-L--NAALRVF 80 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc-c--cHHHHHH
Confidence 344556666777777777777777776522111234555666777777777777777777766543311 1 2223333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhh
Q 015416 130 MADGYCGQGRFKDAIEVFRKMGE 152 (407)
Q Consensus 130 l~~~~~~~g~~~~A~~~~~~~~~ 152 (407)
+..++...|+.++|+.++-....
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 44466677777777777655544
No 171
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.09 E-value=0.00019 Score=59.60 Aligned_cols=129 Identities=20% Similarity=0.262 Sum_probs=90.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHH
Q 015416 55 KGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGY 134 (407)
Q Consensus 55 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 134 (407)
.-+.+.+++.+|+..|.++++.+ |.|.+-|..-..+|.+.|.++.|++-.+..+..++. ...+|..|..+|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~---P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~------yskay~RLG~A~ 159 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD---PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH------YSKAYGRLGLAY 159 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC---CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH------HHHHHHHHHHHH
Confidence 44567788888888888888876 557777888888888888888888888888877654 556888888888
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH-HHcCCHH---HHHHHHHHHHhCCCCCCH
Q 015416 135 CGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQL-CKNGMLA---EAEELYGEMSDKGVNPDE 194 (407)
Q Consensus 135 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~---~a~~~~~~~~~~~~~p~~ 194 (407)
...|++++|++.|++.+... |+..+|-.=+... .+.+... .+..-++.....|..|+.
T Consensus 160 ~~~gk~~~A~~aykKaLeld--P~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~ 221 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKALELD--PDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDS 221 (304)
T ss_pred HccCcHHHHHHHHHhhhccC--CCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccc
Confidence 88888888888888888754 6666665444433 3333333 333444444444444553
No 172
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.08 E-value=8.8e-06 Score=45.06 Aligned_cols=33 Identities=52% Similarity=0.975 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 015416 161 SFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPD 193 (407)
Q Consensus 161 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 193 (407)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 345555555555555555555555555555444
No 173
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.06 E-value=0.0054 Score=55.31 Aligned_cols=130 Identities=14% Similarity=0.149 Sum_probs=70.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSP-DTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDAC 204 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 204 (407)
+|..++..-.+..-+..|..+|.++.+.+..+ ++.++++++..|| .++..-|.++|+.-++. ..-++.-....+..+
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFL 445 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHH
Confidence 55555665556666666666666665554444 4445555555444 34555666666554432 122233334445555
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 205 FEVNRVDDGATYFRKMVDSGLRPNL--AVYNRLVGKLVQVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 205 ~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 257 (407)
...++-..+..+|++++..++.|+. .+|..++..-..-|+...+.++-++...
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 5556666666666666655444332 3566666655566666665555555544
No 174
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.06 E-value=0.0005 Score=50.14 Aligned_cols=87 Identities=22% Similarity=0.274 Sum_probs=36.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhc
Q 015416 202 DACFEVNRVDDGATYFRKMVDSGLRPN--LAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKM---DDASYKFMMKALSDG 276 (407)
Q Consensus 202 ~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 276 (407)
.++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..+|+......|. +......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 333444444444444444444443322 113333444444444444444444444443222 222223333344444
Q ss_pred CCHHHHHHHHHH
Q 015416 277 GKLDEILEIVGG 288 (407)
Q Consensus 277 g~~~~A~~~~~~ 288 (407)
|+.++|++.+-.
T Consensus 89 gr~~eAl~~~l~ 100 (120)
T PF12688_consen 89 GRPKEALEWLLE 100 (120)
T ss_pred CCHHHHHHHHHH
Confidence 444444444433
No 175
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.05 E-value=9.2e-06 Score=44.66 Aligned_cols=33 Identities=36% Similarity=0.696 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccC
Q 015416 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVS 45 (407)
Q Consensus 11 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 45 (407)
.+|+.+|.+|++.|+++.|.++|+.|.+. |++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~--gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQ--GVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC
Confidence 46777777777777777777777777776 6655
No 176
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.04 E-value=1e-05 Score=44.52 Aligned_cols=31 Identities=32% Similarity=0.568 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 015416 161 SFNNLIDQLCKNGMLAEAEELYGEMSDKGVN 191 (407)
Q Consensus 161 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 191 (407)
+|+.++.+|++.|+++.|..+|+.|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444433
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.03 E-value=0.00031 Score=60.62 Aligned_cols=125 Identities=12% Similarity=0.155 Sum_probs=63.2
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----CCHH-H
Q 015416 165 LIDQLCKN-GMLAEAEELYGEMSD----KGVNPD--EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLR-----PNLA-V 231 (407)
Q Consensus 165 l~~~~~~~-g~~~~a~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~-~ 231 (407)
+...|... |++++|++.|+++.+ .+ .+. ..++..+...+.+.|++++|.++|+++...... .+.. .
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 33445455 666666666666543 12 111 234556666677777777777777776643211 1111 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCC--HHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 015416 232 YNRLVGKLVQVGMLDEAKSFFDIMVKK---LKMD--DASYKFMMKALSD--GGKLDEILEIVGGIL 290 (407)
Q Consensus 232 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~--~~~~~~l~~~~~~--~g~~~~A~~~~~~~~ 290 (407)
+...+-++...|++..|...|++.... +..+ ......|+.+|-. ...++.++.-|+.+.
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 333444555667777777777776652 2222 2344555555543 334555555555443
No 178
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.02 E-value=0.00022 Score=61.29 Aligned_cols=129 Identities=13% Similarity=0.070 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCCccccccchH
Q 015416 49 VYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCN-NGKFDEALKLFDRMKNEHNPPKRLAVNLGSF 127 (407)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 127 (407)
+|..+++..-+.+..+.|..+|.++++.+ ..+..+|......-.. .++.+.|.++|+...+.-+. +...|
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~---~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~------~~~~~ 73 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK---RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS------DPDFW 73 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-------HHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC------CHHHH
Confidence 34455555555555555555555555332 2223333333333222 34444455555555544222 34445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015416 128 NVMADGYCGQGRFKDAIEVFRKMGEYRCSPDT---LSFNNLIDQLCKNGMLAEAEELYGEMSD 187 (407)
Q Consensus 128 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 187 (407)
...++.+...|+.+.|..+|++.+.. ++++. ..|...+..=.+.|+.+.+..+.+++.+
T Consensus 74 ~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 74 LEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555555555443 22111 2455555555555555555555555554
No 179
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.01 E-value=0.0002 Score=64.02 Aligned_cols=124 Identities=17% Similarity=0.268 Sum_probs=97.7
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 015416 81 KMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTL 160 (407)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 160 (407)
+-+......+++.+....+.+.+..++.+..... .....-..+..++++.|...|..+.++.++..=...|+-||..
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~---~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSP---NCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCc---ccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 4466667777887877888888888888877652 2222234466789999999999999999999988999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 015416 161 SFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEV 207 (407)
Q Consensus 161 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 207 (407)
++|.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999998888766666667776666666554
No 180
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.01 E-value=0.00039 Score=64.76 Aligned_cols=134 Identities=12% Similarity=-0.021 Sum_probs=71.0
Q ss_pred CCchhhHHHHHHHHHhc--C---CHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcC--------CHHHHHHHH
Q 015416 81 KMSAVANNSVLDALCNN--G---KFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQG--------RFKDAIEVF 147 (407)
Q Consensus 81 ~~~~~~~~~l~~~~~~~--~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~ 147 (407)
+.+...|...+++.... + +...|..+|+++++..|. ....+..+..+|.... ++..+.+..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~------~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD------FTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 56677888877765432 2 377899999999988655 4445555444443221 112222222
Q ss_pred HHHhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015416 148 RKMGEY-RCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVD 222 (407)
Q Consensus 148 ~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 222 (407)
.+.... ..+.+...|..+...+...|++++|...++++... .|+...|..+...+...|+.++|.+.|++...
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 222221 11223344554544444555555555555555553 24555555555555555555555555555554
No 181
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.99 E-value=2.7e-05 Score=51.07 Aligned_cols=64 Identities=25% Similarity=0.315 Sum_probs=37.5
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHHhc
Q 015416 47 GVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNG-KFDEALKLFDRMKNE 113 (407)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~ 113 (407)
+.+|..++..+...|++++|+..|+++++.+ +.+...|..+..+|...| ++++|++.+++.++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~---p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD---PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS---TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4455556666666666666666666666554 334555666666666666 466666666655543
No 182
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.00034 Score=58.46 Aligned_cols=112 Identities=15% Similarity=0.077 Sum_probs=84.7
Q ss_pred HHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcC---CHHHH
Q 015416 67 MECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQG---RFKDA 143 (407)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A 143 (407)
..-++.-+..+ |-|...|..|..+|...|+++.|...|.+..+..++ +...+..+..++..+. ...++
T Consensus 142 ~a~Le~~L~~n---P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~------n~~~~~g~aeaL~~~a~~~~ta~a 212 (287)
T COG4235 142 IARLETHLQQN---PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD------NPEILLGLAEALYYQAGQQMTAKA 212 (287)
T ss_pred HHHHHHHHHhC---CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCcccHHH
Confidence 33444555565 557888888888888888888888888888887654 5666777776665443 35678
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 015416 144 IEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDK 188 (407)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 188 (407)
..+|++++..+ +.|+.+...|...+...|++.+|...|+.|++.
T Consensus 213 ~~ll~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 213 RALLRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 88888888876 566777788888888889999999999888875
No 183
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.98 E-value=0.00026 Score=60.22 Aligned_cols=228 Identities=12% Similarity=0.097 Sum_probs=122.4
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHH----HHHHhcCCCCCccccccchHHHHHHHH
Q 015416 59 MKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLF----DRMKNEHNPPKRLAVNLGSFNVMADGY 134 (407)
Q Consensus 59 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~ 134 (407)
...+..+|+..+.+.+..-.+......++..+..+.+..|.+++++..- +-..+.. ....-..+|..+..++
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~----ds~~~~ea~lnlar~~ 93 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELE----DSDFLLEAYLNLARSN 93 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 3445555555555544332111122334444555556666655544321 1111110 0000122455555555
Q ss_pred HhcCCHHHHHHHHHHHhhC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHH
Q 015416 135 CGQGRFKDAIEVFRKMGEY-RCSP---DTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVN-----PDEYTYGLLMDACF 205 (407)
Q Consensus 135 ~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----p~~~~~~~l~~~~~ 205 (407)
-+.-++.+++.+-..-... |..| .-....++..++...+.++++++.|+.+.+.-.. .....+..+...|.
T Consensus 94 e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~ 173 (518)
T KOG1941|consen 94 EKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFA 173 (518)
T ss_pred HHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHH
Confidence 5555566665554443332 1111 1123344667777777888888888877652111 12456777888888
Q ss_pred hcCChHHHHHHHHHHHH----CCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCC-CHHHHHHH
Q 015416 206 EVNRVDDGATYFRKMVD----SGLRPNLA------VYNRLVGKLVQVGMLDEAKSFFDIMVK-----KLKM-DDASYKFM 269 (407)
Q Consensus 206 ~~g~~~~a~~~~~~~~~----~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~~~~~~~l 269 (407)
...++++|.-+..+..+ .++. |.. +...|.-++...|....|.+.-++..+ +..+ .......+
T Consensus 174 ~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~ 252 (518)
T KOG1941|consen 174 QLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCF 252 (518)
T ss_pred HHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 88888887776665543 1221 111 223344566677888777777777665 2222 34456677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 015416 270 MKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 270 ~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
.+.|...|+.+.|..-|+.+..
T Consensus 253 aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 253 ADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHhcccHhHHHHHHHHHHH
Confidence 7788888888888877776654
No 184
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.98 E-value=0.00015 Score=60.25 Aligned_cols=130 Identities=18% Similarity=0.202 Sum_probs=99.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 015416 91 LDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLC 170 (407)
Q Consensus 91 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 170 (407)
..-+.+.+++.+|+..|.++++..+. +...|..-..+|.+.|.++.|++-.+..+..+ +-...+|..|..+|.
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~------nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPT------NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCC------cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHH
Confidence 34467899999999999999998766 78889999999999999999999999998875 344679999999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCChH---HHHHHHHHHHHCCCCCCH
Q 015416 171 KNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDAC-FEVNRVD---DGATYFRKMVDSGLRPNL 229 (407)
Q Consensus 171 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~---~a~~~~~~~~~~~~~~~~ 229 (407)
..|++.+|++.|++.++ +.|+-.+|-.=+... .+.+... .+..-++-....|..|+.
T Consensus 161 ~~gk~~~A~~aykKaLe--ldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~ 221 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALE--LDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDS 221 (304)
T ss_pred ccCcHHHHHHHHHhhhc--cCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccc
Confidence 99999999999999998 678766766555544 3334433 333334433344443553
No 185
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.00058 Score=57.08 Aligned_cols=115 Identities=17% Similarity=0.224 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC---CHHHH
Q 015416 102 EALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNG---MLAEA 178 (407)
Q Consensus 102 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a 178 (407)
....-++.-+..+|. |...|..|...|...|+++.|..-|....+.. +++...+..+..++.... ...++
T Consensus 140 ~l~a~Le~~L~~nP~------d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a 212 (287)
T COG4235 140 ALIARLETHLQQNPG------DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKA 212 (287)
T ss_pred HHHHHHHHHHHhCCC------CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHH
Confidence 333444444555544 78899999999999999999999999998875 577777777777765543 45688
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 015416 179 EELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSG 224 (407)
Q Consensus 179 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 224 (407)
..+|++++..+ +.+..+...+...+...|++.+|...|+.|++..
T Consensus 213 ~~ll~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 213 RALLRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 89999999864 3467788888899999999999999999999863
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.97 E-value=0.0045 Score=47.88 Aligned_cols=124 Identities=14% Similarity=0.150 Sum_probs=51.1
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHH
Q 015416 83 SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRC-SPDTLS 161 (407)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~ 161 (407)
+......|..++...|++.+|...|++....-... +......+.++....+++..|...++++.+... ..+..+
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~-----d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAH-----DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC-----CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 33333444444445555555555554444321111 334444444444444555555554444433210 001112
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 015416 162 FNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDG 213 (407)
Q Consensus 162 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 213 (407)
.-.+.+.+...|.+.+|+.-|+.+.. .-|+..........+.+.|+.+++
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHH
Confidence 22334444445555555555555444 233333333333333444444433
No 187
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=0.0012 Score=53.82 Aligned_cols=130 Identities=11% Similarity=0.069 Sum_probs=64.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCC-----CCCCHHH
Q 015416 87 NNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYR-----CSPDTLS 161 (407)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~ 161 (407)
.+.++.++.-.|.+.-....+.++++..++. ++.....|++.-.+.||.+.|..+|++..+.. +.....+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~-----~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V 254 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQ-----EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMV 254 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcc-----cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHH
Confidence 3444555555555555555555555544332 45555556666666666666666655443321 1122222
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015416 162 FNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVD 222 (407)
Q Consensus 162 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 222 (407)
.......|.-.+++..|...|.+....+ +.++...|.-.-+....|+..+|.+.++.+.+
T Consensus 255 ~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 255 LMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred HhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2233334444555555555555555432 22344444444444455566666666666655
No 188
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.93 E-value=0.00025 Score=63.51 Aligned_cols=120 Identities=15% Similarity=0.151 Sum_probs=78.2
Q ss_pred ccchHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 015416 123 NLGSFNVMADGYCGQGRFKDAIEVFRKMGEYR--CSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLL 200 (407)
Q Consensus 123 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 200 (407)
+......+++.+....+++.+..++.+..... ...-..|..++++.|...|..+.++.+++.=...|+-||..+++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 44455566666666667777777777765531 1111223457777777777777777777777777777777777777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 015416 201 MDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQV 242 (407)
Q Consensus 201 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 242 (407)
+..+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777555555555555444444443
No 189
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.92 E-value=5.1e-05 Score=49.03 Aligned_cols=58 Identities=26% Similarity=0.304 Sum_probs=34.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 235 LVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 235 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
++..+...|++++|...|+.+++..|.+...+..++.++...|++++|+.+|+++++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455556666666666666666655555666666666666666666666666666554
No 190
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.92 E-value=0.0031 Score=51.44 Aligned_cols=70 Identities=14% Similarity=0.181 Sum_probs=45.3
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 015416 48 VVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPP 117 (407)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 117 (407)
..+...+..+...|++.+|+..|+.+....|.-+....+...++.++.+.|+++.|...+++.++..|..
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~ 75 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS 75 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 3444556666777888888888888877665444445566667777778888888888888877766543
No 191
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.90 E-value=8.4e-05 Score=48.00 Aligned_cols=59 Identities=22% Similarity=0.388 Sum_probs=34.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 015416 53 LMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEH 114 (407)
Q Consensus 53 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 114 (407)
++..+...|++++|+..|+++++.. |-+...+..+..++...|++++|...|+++++..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD---PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS---TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3445556666666666666666554 3355566666666666666666666666665543
No 192
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.89 E-value=0.00056 Score=57.76 Aligned_cols=88 Identities=13% Similarity=0.075 Sum_probs=41.6
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHhhcCcH
Q 015416 240 VQVGMLDEAKSFFDIMVKKLKMD---DASYKFMMKALSDGGKLDEILEIVGGILDDGGI-EFSEELQEFVKGELSKEGRE 315 (407)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 315 (407)
.+.|++++|...|+.+++..|.+ +.++..++.+|...|++++|+..|+.+...+.. +.....+..++.++...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 34455555555555555533332 234455555555555555555555555543211 11222333344445555555
Q ss_pred HHHHHHHHHHHH
Q 015416 316 EEVVKLMEKKER 327 (407)
Q Consensus 316 ~~A~~~~~~~~~ 327 (407)
++|...++++.+
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 193
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.89 E-value=8.1e-05 Score=48.60 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=39.8
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 240 VQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
...|++++|..+|+++....|.+...+..++.+|.+.|++++|..+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45677777888887777777777777777778888888888888887777775
No 194
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.88 E-value=9.4e-05 Score=48.44 Aligned_cols=63 Identities=19% Similarity=0.190 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 015416 229 LAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGG-KLDEILEIVGGILD 291 (407)
Q Consensus 229 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 291 (407)
..+|..++..+...|++++|+..|.+.++..|.+...|..++.+|...| ++++|++.++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3445555555555555555555555555544445555555555555555 45555555555554
No 195
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.83 E-value=0.00045 Score=48.53 Aligned_cols=76 Identities=11% Similarity=0.302 Sum_probs=43.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 015416 130 MADGYCGQGRFKDAIEVFRKMGEYRC-SPDTLSFNNLIDQLCKNG--------MLAEAEELYGEMSDKGVNPDEYTYGLL 200 (407)
Q Consensus 130 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~p~~~~~~~l 200 (407)
.|.-+...+++...-.+|+.+...|+ .|+..+|+.++.+.++.. +.-..+.+|+.|+..+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444455666666666666666666 666666666666655432 122344555555555555555555555
Q ss_pred HHHHH
Q 015416 201 MDACF 205 (407)
Q Consensus 201 ~~~~~ 205 (407)
+..+.
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 55543
No 196
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.82 E-value=0.00055 Score=48.11 Aligned_cols=79 Identities=19% Similarity=0.363 Sum_probs=64.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHCCCCCCHHHHH
Q 015416 163 NNLIDQLCKNGMLAEAEELYGEMSDKGV-NPDEYTYGLLMDACFEVN--------RVDDGATYFRKMVDSGLRPNLAVYN 233 (407)
Q Consensus 163 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~ 233 (407)
...|.-+...+++.....+|+.+.+.|+ -|+..+|+.++.+..+.. ++-..+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455666677999999999999999999 899999999998877643 2446778889999888999999999
Q ss_pred HHHHHHHh
Q 015416 234 RLVGKLVQ 241 (407)
Q Consensus 234 ~l~~~~~~ 241 (407)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88887765
No 197
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.79 E-value=0.016 Score=51.00 Aligned_cols=187 Identities=14% Similarity=0.157 Sum_probs=119.2
Q ss_pred HHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHH---cCCH
Q 015416 102 EALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYR---CSPDTLSFNNLIDQLCK---NGML 175 (407)
Q Consensus 102 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~ 175 (407)
+..+.+.++...-..|..+ +..+...++-+|....+|+..+++++.+.... +......-...+-++.+ .|+.
T Consensus 121 ~l~~~L~~i~~rLd~~~~l--s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdr 198 (374)
T PF13281_consen 121 ELAKELRRIRQRLDDPELL--SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDR 198 (374)
T ss_pred HHHHHHHHHHHhhCCHhhc--ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCH
Confidence 3344445555443333323 33455567778999999999999999998751 11122233344556666 8999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-H
Q 015416 176 AEAEELYGEMSDKGVNPDEYTYGLLMDACFE---------VNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM-L 245 (407)
Q Consensus 176 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~ 245 (407)
++|+.++..+......+++.+|..++..|-. ...+++|+..|.+..+. .|+...--+++..+...|. .
T Consensus 199 e~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~ 276 (374)
T PF13281_consen 199 EKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDF 276 (374)
T ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcc
Confidence 9999999996665567888899988887742 22377888888888763 4665533334444444443 2
Q ss_pred H---HHHHHH---HHHH-h----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 246 D---EAKSFF---DIMV-K----KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 246 ~---~A~~~~---~~~~-~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
+ +..++- ..+. + ....+...+.+++.++.-.|++++|.+.+++|...
T Consensus 277 ~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 277 ETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2 222222 1111 1 23446677788888889999999999999998875
No 198
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.75 E-value=0.0011 Score=54.79 Aligned_cols=106 Identities=16% Similarity=0.132 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHH
Q 015416 10 PVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNS 89 (407)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (407)
...|+.-+..+ ..|++..|...|...++.+|+-.-.+..+.-|+.++...|+++.|..+|..+.+..|..+.-...+.-
T Consensus 142 ~~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 142 TKLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred hHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 34687777665 67889999999999999877766677788889999999999999999999999887766666788888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 015416 90 VLDALCNNGKFDEALKLFDRMKNEHNP 116 (407)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~~~~~~~~ 116 (407)
|..+..+.|+.+.|...|+++.+..|.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999988765
No 199
>PRK15331 chaperone protein SicA; Provisional
Probab=97.75 E-value=0.0033 Score=47.94 Aligned_cols=92 Identities=10% Similarity=-0.022 Sum_probs=57.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCc
Q 015416 235 LVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGR 314 (407)
Q Consensus 235 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 314 (407)
...-+...|++++|..+|+-+.--.+.++.-+..|..++...+++++|+..|..+.... .-++..+...+.+|...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCCccchHHHHHHHhCC
Confidence 34445566777777777776666555566666666666666777777777776655542 2333334445666777777
Q ss_pred HHHHHHHHHHHHHh
Q 015416 315 EEEVVKLMEKKERE 328 (407)
Q Consensus 315 ~~~A~~~~~~~~~~ 328 (407)
.+.|...|+.....
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777666653
No 200
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.71 E-value=0.00015 Score=47.31 Aligned_cols=48 Identities=27% Similarity=0.386 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015416 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMK 111 (407)
Q Consensus 61 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 111 (407)
|++++|+.+|+++.... |.+...+..++.+|.+.|++++|..+++.+.
T Consensus 5 ~~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRN---PDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp THHHHHHHHHHHHHHHT---TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred cCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444443332 2233333334444444444444444444333
No 201
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.66 E-value=7.9e-05 Score=39.78 Aligned_cols=28 Identities=43% Similarity=0.950 Sum_probs=13.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEY 153 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 153 (407)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
No 202
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.65 E-value=0.021 Score=49.06 Aligned_cols=234 Identities=13% Similarity=0.075 Sum_probs=149.6
Q ss_pred HhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHH----HHHhCCCCCCCchhhHHHHHHHHHh
Q 015416 21 VRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYN----EAVGENSSVKMSAVANNSVLDALCN 96 (407)
Q Consensus 21 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (407)
....+.++|+..+.+...+..+......+|..+..+..+.|.+++++..-- -+..... -..--.+|..+.+++.+
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~d-s~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELED-SDFLLEAYLNLARSNEK 95 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 456778888888887776522222234567777888888888887765432 2222110 01123456677777777
Q ss_pred cCCHHHHHHHHHHHHhcC-CCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-----CCHHHHHHHHHHHH
Q 015416 97 NGKFDEALKLFDRMKNEH-NPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCS-----PDTLSFNNLIDQLC 170 (407)
Q Consensus 97 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~ 170 (407)
.-++.+++.+-..-.... ..+.. ..-....++..++...+.++++++.|+...+.... ....++-.|...|.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~--~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~ 173 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQ--LGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFA 173 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCccc--ccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHH
Confidence 777888887776655431 11111 02234455777888888999999999887653211 12347888999999
Q ss_pred HcCCHHHHHHHHHHHHh----CCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHH
Q 015416 171 KNGMLAEAEELYGEMSD----KGVNPD-----EYTYGLLMDACFEVNRVDDGATYFRKMVD----SGLRPN-LAVYNRLV 236 (407)
Q Consensus 171 ~~g~~~~a~~~~~~~~~----~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~ 236 (407)
+..++++|.-+..++.+ .++..- ......+.-++...|.+..|.+..++..+ .|-.+. ......+.
T Consensus 174 ~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~a 253 (518)
T KOG1941|consen 174 QLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFA 253 (518)
T ss_pred HHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 99999999888777653 222211 11233455667788888888888877653 443322 23556778
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 015416 237 GKLVQVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 237 ~~~~~~g~~~~A~~~~~~~~~ 257 (407)
..|...|+.+.|+.-|+....
T Consensus 254 DIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 254 DIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHhcccHhHHHHHHHHHHH
Confidence 889999999999988887765
No 203
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.65 E-value=8e-05 Score=39.76 Aligned_cols=29 Identities=41% Similarity=0.832 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 015416 161 SFNNLIDQLCKNGMLAEAEELYGEMSDKG 189 (407)
Q Consensus 161 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 189 (407)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777777655
No 204
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.64 E-value=0.0034 Score=48.18 Aligned_cols=74 Identities=26% Similarity=0.378 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCcHHHHHH
Q 015416 231 VYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD----GGIEFSEELQEF 304 (407)
Q Consensus 231 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~ 304 (407)
+...++..+...|+++.|..+++.+....|.+...|..++.+|...|+..+|+++|+++... .|++|++.+-..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l 141 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRAL 141 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHH
Confidence 55667778888999999999999999988889999999999999999999999998877543 477888776554
No 205
>PRK15331 chaperone protein SicA; Provisional
Probab=97.62 E-value=0.0074 Score=46.09 Aligned_cols=93 Identities=14% Similarity=0.048 Sum_probs=74.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 015416 199 LLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGK 278 (407)
Q Consensus 199 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 278 (407)
...--+...|++++|..+|+-+.-.+ .-+..-|..|+.++-..+++++|...|.......+.|+..+.....+|...|+
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 34445567899999999999888654 33566778888888888999999999988877556677778888999999999
Q ss_pred HHHHHHHHHHHHhc
Q 015416 279 LDEILEIVGGILDD 292 (407)
Q Consensus 279 ~~~A~~~~~~~~~~ 292 (407)
.+.|...|..+...
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999988873
No 206
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.61 E-value=0.043 Score=48.67 Aligned_cols=131 Identities=11% Similarity=0.145 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 015416 195 YTYGLLMDACFEVNRVDDGATYFRKMVDSG-LRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKAL 273 (407)
Q Consensus 195 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 273 (407)
..|...+....+...++.|..+|-++.+.+ +.+++.++++++..++ .|+..-|..+|+--...++.++.-....+..+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 345566777777777888888888888777 4567778888887766 46778888888887776666666667777778
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCc--HHHHHHHHHHHhhcCcHHHHHHHHHHHHHh
Q 015416 274 SDGGKLDEILEIVGGILDDGGIEFS--EELQEFVKGELSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 274 ~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 328 (407)
...++-+.|..+|+..+.+ +..+ ..+|..++.--..-|+...+..+-+.+.+.
T Consensus 477 i~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 477 IRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 8888888888888876664 2333 568888888777888888888777776543
No 207
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.58 E-value=0.0084 Score=45.98 Aligned_cols=70 Identities=20% Similarity=0.386 Sum_probs=38.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----hCCCCCCHHH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMS-----DKGVNPDEYT 196 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~p~~~~ 196 (407)
+...++..+...|+++.|..+...+.... |.+...|..++.+|...|+...|.+.|+++. +.|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44455556666666666666666666654 4555666666666666666666666666553 2456665544
No 208
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.57 E-value=0.0018 Score=51.52 Aligned_cols=49 Identities=20% Similarity=0.315 Sum_probs=32.7
Q ss_pred ccchHHHHHHHHHh-----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 015416 123 NLGSFNVMADGYCG-----QGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCK 171 (407)
Q Consensus 123 ~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 171 (407)
+..+|..++..|.+ .|.++-....+..|.+.|+..|..+|+.|++.+=+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 34455555555543 35666666777777778888888888888776643
No 209
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.54 E-value=0.04 Score=51.56 Aligned_cols=29 Identities=10% Similarity=0.059 Sum_probs=16.4
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHH
Q 015416 45 SDGVVYGSLMKGYFMKGMEEEAMECYNEA 73 (407)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 73 (407)
|.+..|..|.......-.++-|...|-+.
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 55556666665555555555555555444
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.53 E-value=0.00052 Score=45.43 Aligned_cols=56 Identities=18% Similarity=0.111 Sum_probs=38.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 237 GKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 237 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
..|.+.+++++|.++++.+....|.++..+...+.++...|++++|...|++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45666677777777777777666666666666777777777777777777777664
No 211
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.52 E-value=0.0059 Score=45.52 Aligned_cols=82 Identities=16% Similarity=0.188 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHH
Q 015416 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSV 90 (407)
Q Consensus 11 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (407)
..|+ -.....+.|++++|.+.|+.+..+.|..+-...+.-.|+.+|.+.++++.|+..+++.++.+|.. |+ .-|...
T Consensus 12 ~ly~-~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~h-p~-vdYa~Y 88 (142)
T PF13512_consen 12 ELYQ-EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTH-PN-VDYAYY 88 (142)
T ss_pred HHHH-HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-CC-ccHHHH
Confidence 3344 34455688999999999999999866655566777889999999999999999999999988753 33 334444
Q ss_pred HHHHH
Q 015416 91 LDALC 95 (407)
Q Consensus 91 ~~~~~ 95 (407)
+.+++
T Consensus 89 ~~gL~ 93 (142)
T PF13512_consen 89 MRGLS 93 (142)
T ss_pred HHHHH
Confidence 44433
No 212
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.49 E-value=0.024 Score=49.98 Aligned_cols=176 Identities=15% Similarity=0.032 Sum_probs=117.0
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHh---cCCHHHHHHHHHHHhhCCCCCCH
Q 015416 83 SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCG---QGRFKDAIEVFRKMGEYRCSPDT 159 (407)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~ 159 (407)
+..+...++-+|....+++..+++++.+...-.. + +.-...+-...+.++.+ .|+.++|++++..+......++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~-~-~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~ 217 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTC-D-VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP 217 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCcc-c-hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh
Confidence 3344456667799999999999999998865211 0 11133344566777778 89999999999996665567899
Q ss_pred HHHHHHHHHHHH---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH----HHHHHH---HHHH-H
Q 015416 160 LSFNNLIDQLCK---------NGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVD----DGATYF---RKMV-D 222 (407)
Q Consensus 160 ~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~----~a~~~~---~~~~-~ 222 (407)
.+|..++..|-. ....++|+..|.+.-+. .|+..+=..++..+...|... +..++- ..+. +
T Consensus 218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~ 295 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGR 295 (374)
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHh
Confidence 999988887753 22467888888887763 466544333444444444322 222222 2211 3
Q ss_pred CCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 015416 223 SGL---RPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMD 262 (407)
Q Consensus 223 ~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 262 (407)
.|. ..+...+..++.+..-.|++++|.+..+++....+|.
T Consensus 296 kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 296 KGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred hccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 332 3455677788899999999999999999999864443
No 213
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.43 E-value=0.00053 Score=46.12 Aligned_cols=26 Identities=27% Similarity=0.524 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015416 231 VYNRLVGKLVQVGMLDEAKSFFDIMV 256 (407)
Q Consensus 231 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 256 (407)
+++.++..|...|++++|+..|++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444444444444444
No 214
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.43 E-value=0.00082 Score=44.48 Aligned_cols=55 Identities=20% Similarity=0.211 Sum_probs=25.6
Q ss_pred HHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 015416 19 GFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGE 76 (407)
Q Consensus 19 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 76 (407)
.|.+.++++.|+++++.+... .|.++..|...+.++...|++++|...|+++++.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALEL---DPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHh---CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344444444444444444443 2224444444444444444444444444444443
No 215
>PRK11906 transcriptional regulator; Provisional
Probab=97.42 E-value=0.021 Score=51.20 Aligned_cols=164 Identities=9% Similarity=0.014 Sum_probs=118.0
Q ss_pred HHH--HHHHHHHHHc-----CCHHHHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHh---------cCChHHHHHHHHHHH
Q 015416 160 LSF--NNLIDQLCKN-----GMLAEAEELYGEMSD-KGVNPD-EYTYGLLMDACFE---------VNRVDDGATYFRKMV 221 (407)
Q Consensus 160 ~~~--~~l~~~~~~~-----g~~~~a~~~~~~~~~-~~~~p~-~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~ 221 (407)
..| ..++.+.... ...+.|+.+|.+... ..+.|+ ...|..+..++.. .....+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 5555554442 234678889999882 224555 4455555444432 223456777888888
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHH
Q 015416 222 DSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEEL 301 (407)
Q Consensus 222 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 301 (407)
+.+ +.|..+...++.+....++++.|...|++.....|....+|......+...|+.++|.+.+++.++.........+
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~ 410 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVV 410 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHH
Confidence 865 5578888888888888889999999999999977888889999999999999999999999998887544444455
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHH
Q 015416 302 QEFVKGELSKEGREEEVVKLMEKK 325 (407)
Q Consensus 302 ~~~l~~~~~~~g~~~~A~~~~~~~ 325 (407)
....++.|+..+ .++|++++-+-
T Consensus 411 ~~~~~~~~~~~~-~~~~~~~~~~~ 433 (458)
T PRK11906 411 IKECVDMYVPNP-LKNNIKLYYKE 433 (458)
T ss_pred HHHHHHHHcCCc-hhhhHHHHhhc
Confidence 556666776655 67777776553
No 216
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.052 Score=44.67 Aligned_cols=140 Identities=12% Similarity=0.117 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-----HHHHHHH
Q 015416 161 SFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPN-----LAVYNRL 235 (407)
Q Consensus 161 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l 235 (407)
+.+.++..+.-.|.+.-...++.+.++...+.++.....+++.-.+.|+.+.|..+|++..+..-..+ ..+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 45667777778889999999999999876667788888999999999999999999998775322333 3333444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHH
Q 015416 236 VGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQE 303 (407)
Q Consensus 236 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 303 (407)
...|.-.+++..|...+.++....+.++...+.-.-+..-.|+...|++.++.++.. .|...+..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~---~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ---DPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc---CCccchhh
Confidence 455677889999999999998877778888888888888889999999999999886 45554444
No 217
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.40 E-value=0.005 Score=50.95 Aligned_cols=88 Identities=15% Similarity=0.137 Sum_probs=45.1
Q ss_pred hcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHH
Q 015416 206 EVNRVDDGATYFRKMVDSGLR--PNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLK---MDDASYKFMMKALSDGGKLD 280 (407)
Q Consensus 206 ~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~ 280 (407)
+.|++..|...|...++.... -....+..|+.++...|++++|..+|..+.+..| .-+.++..+..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 444455555555555543110 1122445555555555555555555555555222 23445555555555555555
Q ss_pred HHHHHHHHHHhcC
Q 015416 281 EILEIVGGILDDG 293 (407)
Q Consensus 281 ~A~~~~~~~~~~~ 293 (407)
+|...|+++.+.+
T Consensus 233 ~A~atl~qv~k~Y 245 (262)
T COG1729 233 EACATLQQVIKRY 245 (262)
T ss_pred HHHHHHHHHHHHC
Confidence 5555555555553
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.39 E-value=0.00076 Score=45.33 Aligned_cols=63 Identities=27% Similarity=0.380 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHh---hCCccCC-cchHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015416 12 VYSYLMLGFVRDGDSDGVFRLFEELKEK---LGGVVSD-GVVYGSLMKGYFMKGMEEEAMECYNEAV 74 (407)
Q Consensus 12 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 74 (407)
+|+.+...|...|++++|++.|++..+. .+...|+ ..+++.++.++...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455555555555555555555555432 1111111 3344445555555555555555555443
No 219
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.39 E-value=0.08 Score=46.24 Aligned_cols=111 Identities=15% Similarity=0.094 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 015416 195 YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALS 274 (407)
Q Consensus 195 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 274 (407)
.+.+..+.-+...|+...|.++-.+. . .|+...|...+.+++..++|++-..+... +-++.-|...+.+|.
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACL 248 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHH
Confidence 35556667777888888887776554 2 47888999999999999999887776432 235678889999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 015416 275 DGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKK 325 (407)
Q Consensus 275 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 325 (407)
..|...+|..+..++ ++ ..-+..|.+.|.+.+|.+..-+.
T Consensus 249 ~~~~~~eA~~yI~k~------~~-----~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI------PD-----EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhC------Ch-----HHHHHHHHHCCCHHHHHHHHHHc
Confidence 999999999888762 22 23455678889998888765444
No 220
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.008 Score=52.48 Aligned_cols=96 Identities=15% Similarity=-0.044 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Q 015416 229 LAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGE 308 (407)
Q Consensus 229 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 308 (407)
..++..|..+|.+.+++..|+....+.+...++|......-+.+|...|+++.|+..|+++.+.. |.+..+...++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence 34677888889999999999999999999888899999999999999999999999999999863 4555566666555
Q ss_pred HhhcCcHHHH-HHHHHHHH
Q 015416 309 LSKEGREEEV-VKLMEKKE 326 (407)
Q Consensus 309 ~~~~g~~~~A-~~~~~~~~ 326 (407)
-.+..+..+. .++|..|-
T Consensus 335 ~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4444333322 44444443
No 221
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.33 E-value=0.085 Score=45.42 Aligned_cols=103 Identities=14% Similarity=0.149 Sum_probs=54.4
Q ss_pred chHHHHHHHHHhcCCHH---HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015416 125 GSFNVMADGYCGQGRFK---DAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLM 201 (407)
Q Consensus 125 ~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 201 (407)
.++..++.+|...+..+ +|..+++.+.... +....++..-+..+.+.++.+.+.+.+.+|+.. +......+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHH
Confidence 35666777777766544 3445555554432 223445545566666677788888888888764 222333444444
Q ss_pred HHHHh--cCChHHHHHHHHHHHHCCCCCCH
Q 015416 202 DACFE--VNRVDDGATYFRKMVDSGLRPNL 229 (407)
Q Consensus 202 ~~~~~--~g~~~~a~~~~~~~~~~~~~~~~ 229 (407)
..+.. ......+...+..++...+.|..
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 44421 12234455555555533334433
No 222
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.32 E-value=0.031 Score=51.87 Aligned_cols=164 Identities=18% Similarity=0.174 Sum_probs=116.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCH-----HHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHH
Q 015416 164 NLIDQLCKNGMLAEAEELYGEMSDKG-VNPDE-----YTYGLLMDACFE----VNRVDDGATYFRKMVDSGLRPNLAVYN 233 (407)
Q Consensus 164 ~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~-----~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 233 (407)
.++....=.|+-+.+++.+.+..+.+ +.-.. -.|..++..++. ....+.|.+++..+.+. -|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 34555556789999999998877532 22211 233333433333 45678899999999974 56665554
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHH-H
Q 015416 234 -RLVGKLVQVGMLDEAKSFFDIMVK----KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVK-G 307 (407)
Q Consensus 234 -~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~-~ 307 (407)
.-++.+...|++++|++.|+.... -.......+.-++.++...++|++|...|..+.+.. ..+..+|..+. .
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s--~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES--KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc--ccHHHHHHHHHHH
Confidence 446677889999999999997664 122245567778888999999999999999999974 55666776654 4
Q ss_pred HHhhcCcH-------HHHHHHHHHHHHhhHH
Q 015416 308 ELSKEGRE-------EEVVKLMEKKEREKAE 331 (407)
Q Consensus 308 ~~~~~g~~-------~~A~~~~~~~~~~~~~ 331 (407)
++...|+. ++|.+++.+++....+
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k 379 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPKLKQK 379 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 56678888 9999999999865443
No 223
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.01 Score=51.80 Aligned_cols=126 Identities=14% Similarity=0.124 Sum_probs=96.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC-----CCCC---------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 015416 166 IDQLCKNGMLAEAEELYGEMSDK-----GVNP---------DEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAV 231 (407)
Q Consensus 166 ~~~~~~~g~~~~a~~~~~~~~~~-----~~~p---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 231 (407)
...|.+.|++..|...|++++.. +..+ -..++..+..+|.+.+++..|+....+.++.+ ++|.-.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 45667777777777777775431 1111 13467888999999999999999999999865 667788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhc
Q 015416 232 YNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDE-ILEIVGGILDD 292 (407)
Q Consensus 232 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~ 292 (407)
...-+++|...|+++.|...|+++.+..|.|..+-..++.+-.+.....+ ..++|..|...
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88899999999999999999999999777777777777766666555444 47788888775
No 224
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.32 E-value=0.0069 Score=48.35 Aligned_cols=84 Identities=13% Similarity=0.188 Sum_probs=42.9
Q ss_pred chhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhc----------------CCHH
Q 015416 83 SAVANNSVLDALCNN-----GKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQ----------------GRFK 141 (407)
Q Consensus 83 ~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g~~~ 141 (407)
+..+|..++..|.+. |..+-....+..|.+-|..- |..+|+.|++++=+. .+-+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~k-----DL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~ 120 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEK-----DLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQE 120 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcc-----cHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHH
Confidence 455555555555432 45555555666666666554 556666666655431 1223
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 015416 142 DAIEVFRKMGEYRCSPDTLSFNNLIDQLCK 171 (407)
Q Consensus 142 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 171 (407)
-|++++++|...|+.||..++..++..+.+
T Consensus 121 c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 121 CAIDLLEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 344445555555555555555544444433
No 225
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.071 Score=43.42 Aligned_cols=207 Identities=13% Similarity=0.103 Sum_probs=111.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 015416 85 VANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNN 164 (407)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 164 (407)
..|.....+|....++++|...+.+..+.... +...|. ....++.|.-+.+++.+.. --...|+-
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEn------nrslfh-------AAKayEqaamLake~~kls--Evvdl~eK 96 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYEN------NRSLFH-------AAKAYEQAAMLAKELSKLS--EVVDLYEK 96 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh------cccHHH-------HHHHHHHHHHHHHHHHHhH--HHHHHHHH
Confidence 34555566777778888888877776643211 111111 1223455555555555431 22234555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH---CCC--CCCHHHHHHHHHHH
Q 015416 165 LIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVD---SGL--RPNLAVYNRLVGKL 239 (407)
Q Consensus 165 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~--~~~~~~~~~l~~~~ 239 (407)
-...|...|.++.|-..+++.-+. ...-++++|+++|++... .+- .--...+......+
T Consensus 97 As~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~l 160 (308)
T KOG1585|consen 97 ASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVL 160 (308)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHh
Confidence 566677777777666666654321 112233444444444331 110 01122344455566
Q ss_pred HhcCCHHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCcHHHHHHHHHHHhh
Q 015416 240 VQVGMLDEAKSFFDIMVK------KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGI--EFSEELQEFVKGELSK 311 (407)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~ 311 (407)
.+...+++|-..|.+-.. ..+..-..|...+..+....++..|.+.++.-.+..++ +.+..+...|+.+| .
T Consensus 161 Vrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d 239 (308)
T KOG1585|consen 161 VRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-D 239 (308)
T ss_pred hhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-c
Confidence 666777776665554433 12222345677777777788888999888875554322 23344566666665 5
Q ss_pred cCcHHHHHHHHH
Q 015416 312 EGREEEVVKLME 323 (407)
Q Consensus 312 ~g~~~~A~~~~~ 323 (407)
.|+.+++..++.
T Consensus 240 ~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 240 EGDIEEIKKVLS 251 (308)
T ss_pred cCCHHHHHHHHc
Confidence 677777666544
No 226
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.27 E-value=0.08 Score=43.68 Aligned_cols=187 Identities=13% Similarity=0.119 Sum_probs=106.5
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhH
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVAN 87 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (407)
|-...|+.-+.. .+.|++++|.+.|+.+..+.|..+-...+.-.++.++.+.++++.|+..+++.+...|+ .||. .|
T Consensus 33 p~~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~-~~n~-dY 109 (254)
T COG4105 33 PASELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT-HPNA-DY 109 (254)
T ss_pred CHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC-CCCh-hH
Confidence 334445555444 47788999999999988876665556667777888888889999999999888887764 3333 34
Q ss_pred HHHHHHHHhc-------CC---HHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 015416 88 NSVLDALCNN-------GK---FDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSP 157 (407)
Q Consensus 88 ~~l~~~~~~~-------~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 157 (407)
...+.+++.- .+ ...|..-|+.++..-|... ..++ |...+..+...
T Consensus 110 ~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~-Ya~d-------------------A~~~i~~~~d~---- 165 (254)
T COG4105 110 AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR-YAPD-------------------AKARIVKLNDA---- 165 (254)
T ss_pred HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc-chhh-------------------HHHHHHHHHHH----
Confidence 4444443321 12 2345555555555544321 1111 11111111000
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015416 158 DTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPD---EYTYGLLMDACFEVNRVDDGATYFRKMVD 222 (407)
Q Consensus 158 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 222 (407)
=...=..+..-|.+.|.+..|..-++.|++. .+-+ ...+-.+..+|...|-.++|...-.-+..
T Consensus 166 LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 166 LAGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 0000013456677777777777777777764 2211 33455566677777777777665555443
No 227
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.18 E-value=0.011 Score=52.81 Aligned_cols=69 Identities=13% Similarity=0.046 Sum_probs=51.3
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 45 SDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNE 113 (407)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 113 (407)
.+...|+.++.+|...|++++|+..|+++++.+|+...-..+|..+..+|...|+.++|+..++++++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345678888888888888888888888888876431111145788888888888888888888888775
No 228
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.16 E-value=0.1 Score=43.00 Aligned_cols=68 Identities=22% Similarity=0.163 Sum_probs=48.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 015416 50 YGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPP 117 (407)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 117 (407)
+..-+..-.+.|++++|...|+.+..+.|.-+....+...++.++.+.++++.|+..+++.....|..
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~ 104 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTH 104 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Confidence 33344445677888888888888887776555555666667777788888888888888887776654
No 229
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.082 Score=43.07 Aligned_cols=60 Identities=10% Similarity=0.081 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHH------HHHHHHHHcCCHHHHHHHHHHH
Q 015416 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYG------SLMKGYFMKGMEEEAMECYNEA 73 (407)
Q Consensus 11 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~------~l~~~~~~~g~~~~A~~~~~~~ 73 (407)
..|..-..+|....++++|...+.+..+ +...+...|. ..+-..-....+.++..+|+++
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~---~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKA 97 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASK---GYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKA 97 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHH---HHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3466667788888999999998888876 3333443332 2222233334455555555544
No 230
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.11 E-value=0.01 Score=53.13 Aligned_cols=63 Identities=17% Similarity=0.102 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 193 DEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNL----AVYNRLVGKLVQVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 193 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 257 (407)
+...++.+..+|...|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..+++.++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3566777777777777777777777777663 4442 2467777777777777777777777665
No 231
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.11 E-value=0.025 Score=41.04 Aligned_cols=97 Identities=16% Similarity=0.087 Sum_probs=74.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHH---HHHHHHHHHhhcC
Q 015416 237 GKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEE---LQEFVKGELSKEG 313 (407)
Q Consensus 237 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g 313 (407)
-++...|+.+.|++.|.+.+...|..+..|+.-.+++.-.|+.++|++-++++++..|-. ... .|..-+..|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 456778899999999988888777788889999999999999999999888888875433 332 2333345677889
Q ss_pred cHHHHHHHHHHHHHhhHHHHH
Q 015416 314 REEEVVKLMEKKEREKAEAKA 334 (407)
Q Consensus 314 ~~~~A~~~~~~~~~~~~~~~~ 334 (407)
+.+.|..-|+...+.|.+...
T Consensus 130 ~dd~AR~DFe~AA~LGS~FAr 150 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSKFAR 150 (175)
T ss_pred chHHHHHhHHHHHHhCCHHHH
Confidence 999999988888877765543
No 232
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.06 E-value=0.032 Score=41.68 Aligned_cols=84 Identities=17% Similarity=0.144 Sum_probs=63.5
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchH
Q 015416 48 VVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSF 127 (407)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 127 (407)
..+..-+....+.|+++.|++.|+.+..+-|.-+-...+...++.+|.+.++++.|...+++.++..|.... ..|
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-----vdY 85 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-----VDY 85 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-----ccH
Confidence 344455666678899999999999999887654555667778899999999999999999999999876532 245
Q ss_pred HHHHHHHHh
Q 015416 128 NVMADGYCG 136 (407)
Q Consensus 128 ~~l~~~~~~ 136 (407)
...+.+++.
T Consensus 86 a~Y~~gL~~ 94 (142)
T PF13512_consen 86 AYYMRGLSY 94 (142)
T ss_pred HHHHHHHHH
Confidence 445555443
No 233
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.05 E-value=0.19 Score=44.01 Aligned_cols=251 Identities=16% Similarity=0.184 Sum_probs=166.9
Q ss_pred HhcCChhhHHHHHHHHHHhhCCccCCcchHH----HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHh
Q 015416 21 VRDGDSDGVFRLFEELKEKLGGVVSDGVVYG----SLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCN 96 (407)
Q Consensus 21 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (407)
.-.|+++.|.+-|+.|.. |+.+-. .|.-..-+.|..+.|.++-+..-...| .-...+...+...+.
T Consensus 131 l~eG~~~~Ar~kfeAMl~-------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap---~l~WA~~AtLe~r~~ 200 (531)
T COG3898 131 LLEGDYEDARKKFEAMLD-------DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAP---QLPWAARATLEARCA 200 (531)
T ss_pred HhcCchHHHHHHHHHHhc-------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhcc---CCchHHHHHHHHHHh
Confidence 457999999999999987 344433 333334577999999999999988763 346788889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHH---hcCCHHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHHc
Q 015416 97 NGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYC---GQGRFKDAIEVFRKMGEYRCSPDTLS-FNNLIDQLCKN 172 (407)
Q Consensus 97 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~ 172 (407)
.|+|+.|+++++.-.......... -...-..|+.+-. -.-+...|...-.+..+. .|+..- --.-..++.+.
T Consensus 201 ~gdWd~AlkLvd~~~~~~vie~~~--aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d 276 (531)
T COG3898 201 AGDWDGALKLVDAQRAAKVIEKDV--AERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRD 276 (531)
T ss_pred cCChHHHHHHHHHHHHHHhhchhh--HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhc
Confidence 999999999999876654322110 0011122222211 123455666665555554 466542 23345788999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 015416 173 GMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVD-SGLRPN-LAVYNRLVGKLVQVGMLDEAKS 250 (407)
Q Consensus 173 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 250 (407)
|+..++-.+++.+-+....|+ .+ .+-.+.+.|+. +..-+++... ..++|| ......+..+-...|++..|..
T Consensus 277 ~~~rKg~~ilE~aWK~ePHP~--ia--~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa 350 (531)
T COG3898 277 GNLRKGSKILETAWKAEPHPD--IA--LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARA 350 (531)
T ss_pred cchhhhhhHHHHHHhcCCChH--HH--HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHH
Confidence 999999999999988644444 32 22234455553 3333333331 114454 4566777888888999988877
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhc
Q 015416 251 FFDIMVKKLKMDDASYKFMMKALSD-GGKLDEILEIVGGILDD 292 (407)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~ 292 (407)
--+.... ..|....|..|.+.--- .|+-.++...+.+.++.
T Consensus 351 ~Aeaa~r-~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 351 KAEAAAR-EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHhh-hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 6666554 56777788888877654 59999999999998874
No 234
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=0.03 Score=47.67 Aligned_cols=117 Identities=16% Similarity=0.123 Sum_probs=60.6
Q ss_pred CChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCCchhhHHHHHHHHHhcCCHHH
Q 015416 24 GDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGE-NSSVKMSAVANNSVLDALCNNGKFDE 102 (407)
Q Consensus 24 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ 102 (407)
|++.+|-..++++.+ ..|.|..++...=.+|.-.|+...-...+++.+.. ++++|-.......+.-++...|-+++
T Consensus 117 g~~h~a~~~wdklL~---d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLD---DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccHHHHHHHHHHH---hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 445555555555555 24445555555555555556655555555555543 33333333333344444555566666
Q ss_pred HHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHH
Q 015416 103 ALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRK 149 (407)
Q Consensus 103 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 149 (407)
|.+.-++..+.+.. |..+..++...+--.|++.++.++..+
T Consensus 194 AEk~A~ralqiN~~------D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 194 AEKQADRALQINRF------DCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHhhccCCCc------chHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 66655555554332 444555555555555565555555444
No 235
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.92 E-value=0.022 Score=42.03 Aligned_cols=95 Identities=14% Similarity=0.056 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCHHHHHHHH
Q 015416 193 DEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK--KLKMDDASYKFMM 270 (407)
Q Consensus 193 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~ 270 (407)
|..++..++.++++.|+++....+++..-. +.++... ..+. ... ...|+..+..+++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~----------~~~~spl~Pt~~lL~AIv 59 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD----------YPPSSPLYPTSRLLIAIV 59 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc----------cCCCCCCCCCHHHHHHHH
Confidence 345666677777777777776666655432 2221100 0000 111 4567888888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Q 015416 271 KALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGE 308 (407)
Q Consensus 271 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 308 (407)
.+|+..|++..|+++++...+.++++.+..++..|..-
T Consensus 60 ~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 60 HSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99988899999999999888888888888888877763
No 236
>PRK11906 transcriptional regulator; Provisional
Probab=96.83 E-value=0.21 Score=45.12 Aligned_cols=159 Identities=12% Similarity=0.034 Sum_probs=98.3
Q ss_pred chH--HHHHHHHHHc-----CCHHHHHHHHHHHH---hCCCCCCCchhhHHHHHHHHHhc---------CCHHHHHHHHH
Q 015416 48 VVY--GSLMKGYFMK-----GMEEEAMECYNEAV---GENSSVKMSAVANNSVLDALCNN---------GKFDEALKLFD 108 (407)
Q Consensus 48 ~~~--~~l~~~~~~~-----g~~~~A~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~ 108 (407)
..| ..++++.... ...+.|+.+|.++. ..+ |.....|..+..++... ....+|.+.-+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ld---p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~ 328 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQ---TLKTECYCLLAECHMSLALHGKSELELAAQKALELLD 328 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCC---cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 556 5555554432 23567888999998 444 22355555555444322 23456667777
Q ss_pred HHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 015416 109 RMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDK 188 (407)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 188 (407)
+..+.++. |..+...+..++...++++.|...|++....+ |....+|....-.+.-.|+.++|.+.+++..+.
T Consensus 329 rAveld~~------Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 329 YVSDITTV------DGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred HHHhcCCC------CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 77776654 67777777777778888888888888888765 334456666666677788888888888887663
Q ss_pred CCCCCHH---HHHHHHHHHHhcCChHHHHHHHHH
Q 015416 189 GVNPDEY---TYGLLMDACFEVNRVDDGATYFRK 219 (407)
Q Consensus 189 ~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~ 219 (407)
.|... .....+..|+. ..++.++++|-+
T Consensus 402 --sP~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 432 (458)
T PRK11906 402 --EPRRRKAVVIKECVDMYVP-NPLKNNIKLYYK 432 (458)
T ss_pred --CchhhHHHHHHHHHHHHcC-CchhhhHHHHhh
Confidence 44422 22222334443 345566666544
No 237
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.83 E-value=0.41 Score=44.38 Aligned_cols=133 Identities=17% Similarity=0.168 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHH
Q 015416 12 VYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVL 91 (407)
Q Consensus 12 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (407)
.|+.||.---...+.+.+..++..+... .|.----|......-.+.|..+.+.++|++.+.. ++.+...|....
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~k---yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a---ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSK---YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA---IPLSVDLWLSYL 120 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhh---CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---hhhHHHHHHHHH
Confidence 3444554444444445556666666653 2223334555555556666677777777766654 355566665555
Q ss_pred HHHH-hcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 015416 92 DALC-NNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY 153 (407)
Q Consensus 92 ~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 153 (407)
.-+. ..|+.+.....|+.+...-... + .+...|...+.--..++++.....+|+++++.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~d--F-~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLD--F-LSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccc--h-hccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 4332 3456666666666665432110 0 03335555666666666666666666666554
No 238
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.80 E-value=0.29 Score=45.54 Aligned_cols=164 Identities=16% Similarity=0.132 Sum_probs=116.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH------HHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTL------SFNNLIDQLCK----NGMLAEAEELYGEMSDKGVNPDEY 195 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~ 195 (407)
.+..++....-.||-+.+++.+.+..+.+--..+. .|..++..++. ....+.|.+++..+.+. -|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 56778888888999999999998876643112221 34555544443 35678899999999874 56655
Q ss_pred HHH-HHHHHHHhcCChHHHHHHHHHHHHC--CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 015416 196 TYG-LLMDACFEVNRVDDGATYFRKMVDS--GL-RPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMK 271 (407)
Q Consensus 196 ~~~-~l~~~~~~~g~~~~a~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 271 (407)
.|. .-...+...|++++|++.|+..... .. ......+.-++..+.-.++|++|...|..+.+....+...|..+..
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 544 3446677889999999999986631 11 1233466778888999999999999999999966666666655554
Q ss_pred HH-HhcCCH-------HHHHHHHHHHHh
Q 015416 272 AL-SDGGKL-------DEILEIVGGILD 291 (407)
Q Consensus 272 ~~-~~~g~~-------~~A~~~~~~~~~ 291 (407)
+| ...|+. ++|.++|.++-.
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 44 457877 888888887654
No 239
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.26 Score=41.59 Aligned_cols=152 Identities=12% Similarity=0.032 Sum_probs=101.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 015416 165 LIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244 (407)
Q Consensus 165 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 244 (407)
-.......|++.+|..+|....... +-+......++.+|...|+.+.|..++..+-..--.........-+..+.+...
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 3445667899999999999888753 223556677889999999999999999887642111111121222344444444
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHH
Q 015416 245 LDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEV 318 (407)
Q Consensus 245 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 318 (407)
..+...+-.+.-. .|.|...-..+...+...|+.+.|.+.+-.++.++.-.-+......++..+.-.|..+.+
T Consensus 219 ~~~~~~l~~~~aa-dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 219 TPEIQDLQRRLAA-DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CCCHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 4444444444433 566888888999999999999999998888877654455666777777777666644433
No 240
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.75 E-value=0.5 Score=44.29 Aligned_cols=259 Identities=19% Similarity=0.207 Sum_probs=125.5
Q ss_pred CCcCHHHHHHHHHHHHhcCChhhHHHHHH---------HHHHhhCCccCCcchHHHHHHHHHHcCCH--HHHHHHHHHHH
Q 015416 6 FVADPVVYSYLMLGFVRDGDSDGVFRLFE---------ELKEKLGGVVSDGVVYGSLMKGYFMKGME--EEAMECYNEAV 74 (407)
Q Consensus 6 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~ 74 (407)
+.|....+.+-+--|...|.+++|.++-- .+... ..+.--++..=.+|.+..+. -+.+.-++++.
T Consensus 552 i~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~----ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k 627 (1081)
T KOG1538|consen 552 ISAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME----ALEALDFETARKAYIRVRDLRYLELISELEERK 627 (1081)
T ss_pred eecccccccccchhhhhccchhhhhcccccceecchHHHHHHH----HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34445555666667778888887765321 11100 01122233333444444332 23344445555
Q ss_pred hCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHH-----HHHHHHHhcCCHHHHHHHHHH
Q 015416 75 GENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFN-----VMADGYCGQGRFKDAIEVFRK 149 (407)
Q Consensus 75 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~ 149 (407)
+.+ -.|+.. .+...|+-.|.+.+|.++|.+- |.... -...|+ -+..-|...|..++-..+.++
T Consensus 628 ~rg--e~P~~i---LlA~~~Ay~gKF~EAAklFk~~---G~enR----AlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RK 695 (1081)
T KOG1538|consen 628 KRG--ETPNDL---LLADVFAYQGKFHEAAKLFKRS---GHENR----ALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRK 695 (1081)
T ss_pred hcC--CCchHH---HHHHHHHhhhhHHHHHHHHHHc---Cchhh----HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHH
Confidence 555 335543 3455677778888888888653 21110 000111 112233334443333333322
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH------HHHhCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015416 150 MGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG------EMSDKGVN---PDEYTYGLLMDACFEVNRVDDGATYFRKM 220 (407)
Q Consensus 150 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~------~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 220 (407)
-.+.. .+..--.+....+...|+.++|..+.- -+.+.+-+ .+..+...+...+.+...+.-|-++|..|
T Consensus 696 RA~WA--r~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~ 773 (1081)
T KOG1538|consen 696 RADWA--RNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKM 773 (1081)
T ss_pred HHHHh--hhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHh
Confidence 11100 011111223444555677666665431 12222112 23344444445555566677777777776
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015416 221 VDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMD----------DASYKFMMKALSDGGKLDEILEIVGGIL 290 (407)
Q Consensus 221 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 290 (407)
-+ ...+++.....++|++|..+-++..+-.+.- ..-|.-.-.+|.+.|+-.+|.++++++.
T Consensus 774 gD---------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 774 GD---------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred cc---------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 53 2246677788889999988888766521111 1123333456666666677776666654
Q ss_pred h
Q 015416 291 D 291 (407)
Q Consensus 291 ~ 291 (407)
.
T Consensus 845 n 845 (1081)
T KOG1538|consen 845 N 845 (1081)
T ss_pred h
Confidence 4
No 241
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.14 Score=43.74 Aligned_cols=149 Identities=18% Similarity=0.154 Sum_probs=67.1
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHH
Q 015416 137 QGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDE----YTYGLLMDACFEVNRVDD 212 (407)
Q Consensus 137 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~ 212 (407)
.|++.+|-..++++++. .|.|...++..=.+|...|+.+.-...+++.+.. -.||. .....+..++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 34444444455555442 3445555555555555555555555555555432 11222 122222233344555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015416 213 GATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMD----DASYKFMMKALSDGGKLDEILEIVGG 288 (407)
Q Consensus 213 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 288 (407)
|++.-++..+.+ +.|......+.+.+.-.|+..++.++..+-....... ...|-...-.+...+.++.|+.+|++
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 555555555432 2344444445555555555555555554443311110 11122233334444555555555543
No 242
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.73 E-value=0.26 Score=40.66 Aligned_cols=199 Identities=21% Similarity=0.149 Sum_probs=83.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HH
Q 015416 127 FNVMADGYCGQGRFKDAIEVFRKMGEY-RCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMD-AC 204 (407)
Q Consensus 127 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~-~~ 204 (407)
+......+...+++..+...+...... ........+..+...+...+.+..+...+.........+ ......... .+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 140 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHH
Confidence 333444444444444444444443321 112233333444444444444444444444444322111 111111111 44
Q ss_pred HhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhcCCHHH
Q 015416 205 FEVNRVDDGATYFRKMVDSGL--RPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKM-DDASYKFMMKALSDGGKLDE 281 (407)
Q Consensus 205 ~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 281 (407)
...|+++.+...+.+...... ......+......+...++.+.+...+.......+. ....+..+...+...++++.
T Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (291)
T COG0457 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEE 220 (291)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHH
Confidence 455555555555555433110 011222233333344455555555555555554333 34555555555555555555
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh
Q 015416 282 ILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 282 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 328 (407)
+...+....... +.....+..+...+...|..+++...+.+....
T Consensus 221 a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 221 ALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555555555531 111223333333333444455555555554443
No 243
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.73 Score=43.98 Aligned_cols=110 Identities=11% Similarity=0.082 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 015416 195 YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALS 274 (407)
Q Consensus 195 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 274 (407)
.+.+--+.-+...|+..+|.++-.+.. -||...|..-+.+++..++|++-+++-+... .+.-|.....+|.
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk-----sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK-----SPIGYLPFVEACL 755 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-----CCCCchhHHHHHH
Confidence 344445555556666666666655543 3566666666677777777766555544332 2445666667777
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHH
Q 015416 275 DGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLME 323 (407)
Q Consensus 275 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 323 (407)
+.|+.++|.+++.+... .. -...+|.+.|++.+|.++--
T Consensus 756 ~~~n~~EA~KYiprv~~------l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGG------LQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hcccHHHHhhhhhccCC------hH----HHHHHHHHhccHHHHHHHHH
Confidence 77777777777665422 11 34456667777777665433
No 244
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.53 E-value=0.0087 Score=34.84 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 015416 232 YNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKF 268 (407)
Q Consensus 232 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 268 (407)
+..+...|...|++++|.++|+++++..|.++..+..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 3444444444444444444444444444444444433
No 245
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.50 E-value=0.47 Score=40.87 Aligned_cols=162 Identities=9% Similarity=0.130 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 015416 161 SFNNLIDQLCKNGMLA---EAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVG 237 (407)
Q Consensus 161 ~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 237 (407)
++..++.+|...+..+ +|..+++.+.... .-.+..+..-+..+.+.++.+.+.+.+.+|+.. +.-....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHH
Confidence 5677888888877655 5666666665432 222455656677777789999999999999975 2212334444444
Q ss_pred HH---HhcCCHHHHHHHHHHHHh-cCCCCHH-HHHH-HH-HH--HHhcCC------HHHHHHHHHHHHhcCCCCCcHHHH
Q 015416 238 KL---VQVGMLDEAKSFFDIMVK-KLKMDDA-SYKF-MM-KA--LSDGGK------LDEILEIVGGILDDGGIEFSEELQ 302 (407)
Q Consensus 238 ~~---~~~g~~~~A~~~~~~~~~-~~~~~~~-~~~~-l~-~~--~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~ 302 (407)
.+ .... ...|...+..+.. ...|... .... ++ .. ....++ .+....++..+....+.+.+..+-
T Consensus 164 ~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 164 HIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 43 4443 3455555555554 4444443 1111 11 11 112211 444555555444443445555443
Q ss_pred HHH-------HHHHhhcCcHHHHHHHHHHH
Q 015416 303 EFV-------KGELSKEGREEEVVKLMEKK 325 (407)
Q Consensus 303 ~~l-------~~~~~~~g~~~~A~~~~~~~ 325 (407)
..+ +....+.+++++|..+++-.
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 333 34567889999999998854
No 246
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.49 E-value=0.0084 Score=34.91 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 015416 49 VYGSLMKGYFMKGMEEEAMECYNEAVGEN 77 (407)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 77 (407)
+|..+...|.+.|++++|+++|+++++..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 44555555555666666666666655554
No 247
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.45 E-value=0.4 Score=39.48 Aligned_cols=224 Identities=19% Similarity=0.142 Sum_probs=150.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCccccccchHHHHHHHHHhc
Q 015416 60 KGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNE--HNPPKRLAVNLGSFNVMADGYCGQ 137 (407)
Q Consensus 60 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ 137 (407)
.+....+...+.......+. ......+......+...+.+..+...+...... ... ....+..+...+...
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 108 (291)
T COG0457 36 LGELAEALELLEEALELLPN-SDLAGLLLLLALALLKLGRLEEALELLEKALELELLPN------LAEALLNLGLLLEAL 108 (291)
T ss_pred HhhHHHHHHHHHHHHhcCcc-ccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccc------hHHHHHHHHHHHHHH
Confidence 45566666666666654311 012456666777777888888888877776642 111 444566677777777
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHH
Q 015416 138 GRFKDAIEVFRKMGEYRCSPDTLSFNNLID-QLCKNGMLAEAEELYGEMSDKGV--NPDEYTYGLLMDACFEVNRVDDGA 214 (407)
Q Consensus 138 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~ 214 (407)
+++..+...+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 187 (291)
T COG0457 109 GKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEAL 187 (291)
T ss_pred hhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHH
Confidence 78888888888877654222 222223333 67788888888888888855221 122344444455567788888899
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 215 TYFRKMVDSGLRP-NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 215 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
..+....... +. ....+..+...+...++++.|...+.......+.....+..+...+...+.++.+...+.+....
T Consensus 188 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 188 ELLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888742 23 36678888888888889999999999888855554556666666666777799999999888876
No 248
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.45 E-value=0.1 Score=38.04 Aligned_cols=96 Identities=20% Similarity=0.100 Sum_probs=66.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHH
Q 015416 54 MKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADG 133 (407)
Q Consensus 54 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 133 (407)
..+....|+.+.|++.|.+.+..- |.....||.-..++.-.|+.++|+.-+.+.++........ -..+|..-...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~---P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trt--acqa~vQRg~l 124 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLA---PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRT--ACQAFVQRGLL 124 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhc---ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchH--HHHHHHHHHHH
Confidence 345667788888888888887764 5567788888888888888888888888777654322110 12244445566
Q ss_pred HHhcCCHHHHHHHHHHHhhCC
Q 015416 134 YCGQGRFKDAIEVFRKMGEYR 154 (407)
Q Consensus 134 ~~~~g~~~~A~~~~~~~~~~~ 154 (407)
|...|+-+.|..-|+..-+.|
T Consensus 125 yRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 125 YRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHhCchHHHHHhHHHHHHhC
Confidence 777788888888787777666
No 249
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.43 E-value=0.21 Score=45.85 Aligned_cols=158 Identities=16% Similarity=0.147 Sum_probs=80.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHH
Q 015416 56 GYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYC 135 (407)
Q Consensus 56 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 135 (407)
...-.++++.+.++...-.-. |.+| ..-.+.++.-+.+.|..+.|+++...-. .-.....
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll-~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~-----------------~rFeLAl 329 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLL-PNIP--KDQGQSIARFLEKKGYPELALQFVTDPD-----------------HRFELAL 329 (443)
T ss_dssp HHHHTT-HHH-----HHHHTG-GG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH-----------------HHHHHHH
T ss_pred HHHHcCChhhhhhhhhhhhhc-ccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH-----------------HHhHHHH
Confidence 344456666666555411100 1122 3335666666667777777766543321 1234555
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 015416 136 GQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGAT 215 (407)
Q Consensus 136 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 215 (407)
+.|+++.|.++.++. ++...|..|.....+.|+++-|++.|.+..+ |..|+-.|...|+.+.-.+
T Consensus 330 ~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 330 QLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred hcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 667777666544322 3566777777777777777777777766542 4456666666777666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015416 216 YFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDI 254 (407)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 254 (407)
+.+.....| -++....++.-.|+.++..+++..
T Consensus 395 l~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 395 LAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666655544 134444445555666666555544
No 250
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.43 E-value=0.55 Score=42.71 Aligned_cols=57 Identities=19% Similarity=0.054 Sum_probs=33.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHhhCCccC-CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 015416 15 YLMLGFVRDGDSDGVFRLFEELKEKLGGVVS-DGVVYGSLMKGYFMKGMEEEAMECYNEAVGEN 77 (407)
Q Consensus 15 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 77 (407)
.+|.-.-+..+.+.-+++-.+..+. .| .+..|..|.. -......++.++|++.++.+
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei----~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAg 230 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEI----NPDCADAYILLAE--EEASTIVEAEELLRQAVKAG 230 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh----hhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHH
Confidence 4555556777777777777777764 22 2333333322 23455788888888877644
No 251
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.43 E-value=0.36 Score=38.73 Aligned_cols=183 Identities=14% Similarity=0.053 Sum_probs=100.8
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 015416 94 LCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNG 173 (407)
Q Consensus 94 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 173 (407)
|-..|-+..|.--|.+.....|. -+.+||.|.--+...|+++.|.+.|+...+.+. ....+...-.-++.-.|
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~------m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp-~y~Ya~lNRgi~~YY~g 147 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPD------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGG 147 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCC------cHHHHHHHHHHHHhcccchHHHHHhhhHhccCC-cchHHHhccceeeeecC
Confidence 33445555666666666665544 455888888888888999999999988888752 22223323333344567
Q ss_pred CHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHH
Q 015416 174 MLAEAEELYGEMSDKGV-NPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNR-LVGKLVQVGMLDEAKSF 251 (407)
Q Consensus 174 ~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~ 251 (407)
++.-|.+-+.+.-+.+. .|-...|.-+. -..-++.+|..-+.+--+ ..+..-|.. ++..|...=.. ..+
T Consensus 148 R~~LAq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yLgkiS~---e~l 218 (297)
T COG4785 148 RYKLAQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYLGKISE---ETL 218 (297)
T ss_pred chHhhHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHHhhccH---HHH
Confidence 88888776666655431 12122222111 122344555443333222 123333332 23333322122 223
Q ss_pred HHHHHhcCCC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 252 FDIMVKKLKM-------DDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 252 ~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
++++...... -..+|..+...+...|+.++|..+|+-.+..
T Consensus 219 ~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 219 MERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3333332221 2457888888889999999999999887764
No 252
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.42 E-value=0.1 Score=38.58 Aligned_cols=98 Identities=13% Similarity=0.121 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 015416 158 DTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVG 237 (407)
Q Consensus 158 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 237 (407)
|..++.+++.++++.|+.+....+++..-. +.++...- .+. .-....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~~---------~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKKK---------EGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCccc---------cCc---------cCCCCCCCCCHHHHHHHHH
Confidence 467888999999999999999999877643 22221000 000 1113345677777777777
Q ss_pred HHHhcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Q 015416 238 KLVQVGMLDEAKSFFDIMVK--KLKMDDASYKFMMKALSD 275 (407)
Q Consensus 238 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~ 275 (407)
+|+..|++..|+++++.+.+ +.+.+..+|..|+.-+..
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 77777777777777777777 555556677776665443
No 253
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.40 E-value=0.67 Score=41.54 Aligned_cols=226 Identities=13% Similarity=0.134 Sum_probs=130.6
Q ss_pred cCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccc
Q 015416 44 VSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123 (407)
Q Consensus 44 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 123 (407)
+-.+.+|.--...+...++-++|++........ .|+ ....+...|....+-+.....|+.....-
T Consensus 299 ~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~----sps--L~~~lse~yel~nd~e~v~~~fdk~~q~L--------- 363 (660)
T COG5107 299 YYAEEVWFDYSEYLIGISDKQKALKTVERGIEM----SPS--LTMFLSEYYELVNDEEAVYGCFDKCTQDL--------- 363 (660)
T ss_pred hhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC----CCc--hheeHHHHHhhcccHHHHhhhHHHHHHHH---------
Confidence 334555555555566677777777776655443 222 11223344444555555555555443210
Q ss_pred cchHHHHHHHHH---hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHH
Q 015416 124 LGSFNVMADGYC---GQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKG-VNPDEYTYGL 199 (407)
Q Consensus 124 ~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~ 199 (407)
..--..+..=+ .-|+++...+++-+-.. .=..+|...+....+..-.+.|..+|-++.+.+ +.++...+++
T Consensus 364 -~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~----k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A 438 (660)
T COG5107 364 -KRKYSMGESESASKVDNNFEYSKELLLKRIN----KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCA 438 (660)
T ss_pred -HHHHhhhhhhhhccccCCccccHHHHHHHHh----hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHH
Confidence 00000000000 01223222222211111 123456666777677777888888888888777 5667777888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhc
Q 015416 200 LMDACFEVNRVDDGATYFRKMVDSGLRPNLA-VYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMD--DASYKFMMKALSDG 276 (407)
Q Consensus 200 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 276 (407)
++..++ .|+..-|..+|+--+.. -||.. -.+..+..+...++-+.|..+|+..+.....+ ...|..++..-..-
T Consensus 439 ~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~ 515 (660)
T COG5107 439 FIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMV 515 (660)
T ss_pred HHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhh
Confidence 877764 46777788888765543 23433 33455666677888888888888776644444 56788888888888
Q ss_pred CCHHHHHHHHHHHHhc
Q 015416 277 GKLDEILEIVGGILDD 292 (407)
Q Consensus 277 g~~~~A~~~~~~~~~~ 292 (407)
|+...+..+=+++...
T Consensus 516 G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 516 GSLNNVYSLEERFREL 531 (660)
T ss_pred cchHHHHhHHHHHHHH
Confidence 8888888887777775
No 254
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.38 E-value=0.59 Score=42.52 Aligned_cols=150 Identities=15% Similarity=0.082 Sum_probs=73.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHH
Q 015416 52 SLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMA 131 (407)
Q Consensus 52 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 131 (407)
.++.-.-+..+++.-++.-.++++.+|+ -...|..|. --......++.++|++..+.+... +
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pd---CAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE~~---------l---- 234 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPD---CADAYILLA--EEEASTIVEAEELLRQAVKAGEAS---------L---- 234 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhh---hhHHHhhcc--cccccCHHHHHHHHHHHHHHHHHh---------h----
Confidence 3444455667777777777777775522 233333332 223455788888888877654211 0
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCh
Q 015416 132 DGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVN-PDEYTYGLLMDACFEVNRV 210 (407)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~ 210 (407)
.+.......-..++.+......+-..+-..+..++-+.|+.++|++.+++|.+.... ........|+.++...+.+
T Consensus 235 ---g~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Y 311 (539)
T PF04184_consen 235 ---GKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAY 311 (539)
T ss_pred ---chhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCH
Confidence 000000000001111111111122222233455555666666666666666543211 1233555666666666666
Q ss_pred HHHHHHHHHHHH
Q 015416 211 DDGATYFRKMVD 222 (407)
Q Consensus 211 ~~a~~~~~~~~~ 222 (407)
.++..++.+..+
T Consensus 312 ad~q~lL~kYdD 323 (539)
T PF04184_consen 312 ADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhcc
Confidence 666666666544
No 255
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.37 E-value=0.67 Score=43.50 Aligned_cols=253 Identities=16% Similarity=0.172 Sum_probs=136.2
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHH---------HHHhCCCCCCCchhhHHHHHHHHHhcCC--HHHHHHHHHHHHhcC
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYN---------EAVGENSSVKMSAVANNSVLDALCNNGK--FDEALKLFDRMKNEH 114 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~ 114 (407)
....+.+-+..|...|.+++|.++-- .+-.. ..+.-.++..-.+|.+..+ +-+.+.-++++.+.|
T Consensus 555 ~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~----ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rg 630 (1081)
T KOG1538|consen 555 VEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME----ALEALDFETARKAYIRVRDLRYLELISELEERKKRG 630 (1081)
T ss_pred ccccccccchhhhhccchhhhhcccccceecchHHHHHHH----HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcC
Confidence 34445555566777788877765421 10000 0112223334445555444 334444556677777
Q ss_pred CCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH-----HHHHHHHcCCHHHHHHHHHHHHh--
Q 015416 115 NPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNN-----LIDQLCKNGMLAEAEELYGEMSD-- 187 (407)
Q Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~-- 187 (407)
..|+ -..+...++-.|.+.+|-++|.+--..+ .-...|+- ...-+...|..++-..+.++-.+
T Consensus 631 e~P~--------~iLlA~~~Ay~gKF~EAAklFk~~G~en--RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WA 700 (1081)
T KOG1538|consen 631 ETPN--------DLLLADVFAYQGKFHEAAKLFKRSGHEN--RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWA 700 (1081)
T ss_pred CCch--------HHHHHHHHHhhhhHHHHHHHHHHcCchh--hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHh
Confidence 6552 2246677888889999998887653321 11122221 23334445555444444433221
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHH------HHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 188 KGVNPDEYTYGLLMDACFEVNRVDDGATYFR------KMVDSGLR---PNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK 258 (407)
Q Consensus 188 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~------~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 258 (407)
.+++-. ......+...|+.++|..+.- -+.+-+-+ .+..+...+...+.+...+.-|-++|.+|-.
T Consensus 701 r~~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD- 775 (1081)
T KOG1538|consen 701 RNIKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD- 775 (1081)
T ss_pred hhcCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc-
Confidence 111111 123344556677777665532 11121111 2334555666666677788888888888754
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHH-----------HHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 015416 259 LKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEE-----------LQEFVKGELSKEGREEEVVKLMEKKER 327 (407)
Q Consensus 259 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 327 (407)
...+++.....++|++|..+-++.-+- .++.. -+...-.+|.++|+..+|..+++++..
T Consensus 776 -------~ksiVqlHve~~~W~eAFalAe~hPe~---~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 776 -------LKSLVQLHVETQRWDEAFALAEKHPEF---KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred -------HHHHhhheeecccchHhHhhhhhCccc---cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 345677788899999999988765442 22221 122223467777888888877777753
No 256
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.30 E-value=0.68 Score=40.56 Aligned_cols=110 Identities=20% Similarity=0.206 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015416 161 SFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240 (407)
Q Consensus 161 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 240 (407)
+.+..+.-+...|+...|.++-.+.. -|+...|...+.+++..++|++-.++... +-++.-|..++..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44555666677888887777765552 36788888888899988888877665432 113366778888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 241 QVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGI 289 (407)
Q Consensus 241 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 289 (407)
..|+..+|..+..++ .+..-+..|.+.|++.+|.+...+.
T Consensus 249 ~~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 888888888888772 1245567778888888887765544
No 257
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.59 Score=39.52 Aligned_cols=52 Identities=13% Similarity=0.108 Sum_probs=27.1
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015416 57 YFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMK 111 (407)
Q Consensus 57 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 111 (407)
....|++..|...|..+.... +-+......++.+|...|+.+.|..++..+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~---~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA---PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC---cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 344555555555555555544 2234444455555555555555555555543
No 258
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.16 E-value=0.93 Score=40.73 Aligned_cols=262 Identities=11% Similarity=0.130 Sum_probs=153.4
Q ss_pred HHhcCChhhHHHHHHHHHHhhCCccCCcchH------HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHH-
Q 015416 20 FVRDGDSDGVFRLFEELKEKLGGVVSDGVVY------GSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLD- 92 (407)
Q Consensus 20 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~- 92 (407)
+.+++++.+|.++|.++.+. ...++..+ +.++++|.. .+.+.....+....+.. + ...|..+..
T Consensus 16 Lqkq~~~~esEkifskI~~e---~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~---~--~s~~l~LF~~ 86 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDE---KESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF---G--KSAYLPLFKA 86 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHH---hhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc---C--CchHHHHHHH
Confidence 45789999999999999885 33343333 346666654 56666666666665543 2 233444433
Q ss_pred -HHHhcCCHHHHHHHHHHHHhc--CCCCCccc-------cccchHHHHHHHHHhcCCHHHHHHHHHHHhhCC----CCCC
Q 015416 93 -ALCNNGKFDEALKLFDRMKNE--HNPPKRLA-------VNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYR----CSPD 158 (407)
Q Consensus 93 -~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~ 158 (407)
.+.+.+++.+|.+.+..-... +..+.-+. .+-..-+..+.++...|++.++..+++++...= ..-+
T Consensus 87 L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~ 166 (549)
T PF07079_consen 87 LVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWN 166 (549)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhccc
Confidence 356889999999998877655 22221110 012223566788899999999999998886532 3367
Q ss_pred HHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcC--ChHHHHH
Q 015416 159 TLSFNNLIDQLCKNG---------------MLAEAEELYGEMSDK------GVNPDEYTYGLLMDACFEVN--RVDDGAT 215 (407)
Q Consensus 159 ~~~~~~l~~~~~~~g---------------~~~~a~~~~~~~~~~------~~~p~~~~~~~l~~~~~~~g--~~~~a~~ 215 (407)
..+|+.++-.+.+.= -++.+.-+.+++... .+-|....+..++....-.. +..--.+
T Consensus 167 ~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq 246 (549)
T PF07079_consen 167 SDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQ 246 (549)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHH
Confidence 888888655554321 123333344444321 23344444555554443221 2222333
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 216 YFRKMVDSGLRPNLA-VYNRLVGKLVQVGMLDEAKSFFDIMVKK-----LKMDDASYKFMMKALSDGGKLDEILEIVGGI 289 (407)
Q Consensus 216 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 289 (407)
+++.-...-+.|+.. +...|...+.+ +.+++..+.+.+... ..--..+|..++....+.++..+|.+.+.-+
T Consensus 247 ~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL 324 (549)
T PF07079_consen 247 ILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALL 324 (549)
T ss_pred HHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 444333334556544 44445555554 566666666555441 1113457888888899999999999988876
Q ss_pred Hhc
Q 015416 290 LDD 292 (407)
Q Consensus 290 ~~~ 292 (407)
...
T Consensus 325 ~~l 327 (549)
T PF07079_consen 325 KIL 327 (549)
T ss_pred Hhc
Confidence 653
No 259
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.15 E-value=1.3 Score=42.18 Aligned_cols=280 Identities=16% Similarity=0.112 Sum_probs=133.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHH
Q 015416 14 SYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDA 93 (407)
Q Consensus 14 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (407)
...|..+.+.||+-...++++.--.. ....--...|+.++..++....|+.|.++|...... ...+.+
T Consensus 764 DLAielr~klgDwfrV~qL~r~g~~d-~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----------e~~~ec 831 (1189)
T KOG2041|consen 764 DLAIELRKKLGDWFRVYQLIRNGGSD-DDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----------ENQIEC 831 (1189)
T ss_pred hhhHHHHHhhhhHHHHHHHHHccCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----------HhHHHH
Confidence 34567788889998888777642111 001112357888888888888888888888654321 234555
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 015416 94 LCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNG 173 (407)
Q Consensus 94 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 173 (407)
+.+..++++-..+-..+.+ +....-.+..++.+.|--++|.+.|-+... |. ..+..|...+
T Consensus 832 ly~le~f~~LE~la~~Lpe----------~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----pk-----aAv~tCv~Ln 892 (1189)
T KOG2041|consen 832 LYRLELFGELEVLARTLPE----------DSELLPVMADMFTSVGMCDQAVEAYLRRSL----PK-----AAVHTCVELN 892 (1189)
T ss_pred HHHHHhhhhHHHHHHhcCc----------ccchHHHHHHHHHhhchHHHHHHHHHhccC----cH-----HHHHHHHHHH
Confidence 5555555554444433322 223444455555555555555544433211 11 1223344444
Q ss_pred CHHHHHHHHHHHHhCCCC-----------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCCH----HHHHH
Q 015416 174 MLAEAEELYGEMSDKGVN-----------PDEYTYGLLMDACFEVNRVDDGATYFRKMVD----SGLRPNL----AVYNR 234 (407)
Q Consensus 174 ~~~~a~~~~~~~~~~~~~-----------p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~----~~~~~ 234 (407)
+|.+|.++-+...-..+. .+.. ..--|..+.+.|..-.|-+++.+|.+ .+.++-. .+..+
T Consensus 893 QW~~avelaq~~~l~qv~tliak~aaqll~~~~-~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~A 971 (1189)
T KOG2041|consen 893 QWGEAVELAQRFQLPQVQTLIAKQAAQLLADAN-HMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGA 971 (1189)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHhhcc-hHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHH
Confidence 444444433322100000 0000 01123344444444444444444432 1211110 01111
Q ss_pred H-HHHH----------HhcCCHHHHHHHHHHHHh--------cCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHHhcC
Q 015416 235 L-VGKL----------VQVGMLDEAKSFFDIMVK--------KLKMDDASYKFM--MKALSDGGKLDEILEIVGGILDDG 293 (407)
Q Consensus 235 l-~~~~----------~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~ 293 (407)
+ +.-+ -..|..++|..+++.... ..--...+|..+ .+--...|.++.|++.--.+..-.
T Consensus 972 lLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYE 1051 (1189)
T KOG2041|consen 972 LLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYE 1051 (1189)
T ss_pred HHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHh
Confidence 1 1101 123445555544433222 011123444444 444556789999988766665544
Q ss_pred CCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 015416 294 GIEFSEELQEFVKGELSKEGREEEVVKLMEKK 325 (407)
Q Consensus 294 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 325 (407)
.+-|..++|..++-+-+....+.-.-+.|-++
T Consensus 1052 d~lpP~eiySllALaaca~raFGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1052 DFLPPAEIYSLLALAACAVRAFGTCSKAFMKL 1083 (1189)
T ss_pred hcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 57788889988876655554444444444333
No 260
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.14 E-value=0.53 Score=40.75 Aligned_cols=50 Identities=24% Similarity=0.308 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHhhCCccCCcchHHHHHHHHHH--c----CCHHHHHHHHHHHHhCCC
Q 015416 27 DGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFM--K----GMEEEAMECYNEAVGENS 78 (407)
Q Consensus 27 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~~ 78 (407)
++.+.+++.|.+. |...+..+|-+....... . ....+|..+|+.|.+..|
T Consensus 79 ~~~~~~y~~L~~~--gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~ 134 (297)
T PF13170_consen 79 KEVLDIYEKLKEA--GFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHP 134 (297)
T ss_pred HHHHHHHHHHHHh--ccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCc
Confidence 3445556666665 555555444432222222 1 123455666666665553
No 261
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.08 E-value=0.063 Score=42.49 Aligned_cols=66 Identities=18% Similarity=0.170 Sum_probs=48.9
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 48 VVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNE 113 (407)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 113 (407)
..+..++..|.+.|+.+.|++.|.++.....+...-...+..+++.....+++..+...+.++...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456778888888888888888888887765333334556677788888888888888887776554
No 262
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.03 E-value=0.61 Score=37.52 Aligned_cols=183 Identities=18% Similarity=0.172 Sum_probs=111.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHH
Q 015416 55 KGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGY 134 (407)
Q Consensus 55 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 134 (407)
..|-..|-+.-|.--|.+.+... |.-+.+||-+.--+...|+++.|.+.|+...+.++.. + .+...-.-.+
T Consensus 73 vlYDSlGL~~LAR~DftQaLai~---P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-----~-Ya~lNRgi~~ 143 (297)
T COG4785 73 VLYDSLGLRALARNDFSQALAIR---PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-----N-YAHLNRGIAL 143 (297)
T ss_pred chhhhhhHHHHHhhhhhhhhhcC---CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-----h-HHHhccceee
Confidence 34445566677777777777765 3346788888888899999999999999999987653 2 2222223344
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 015416 135 CGQGRFKDAIEVFRKMGEYRCSPDTL--SFNNLIDQLCKNGMLAEAEELY-GEMSDKGVNPDEYTYGLLMDACFEVNRVD 211 (407)
Q Consensus 135 ~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 211 (407)
.-.|++.-|.+-|...-+.+ +.|+. .|-.+.. ..-++.+|..-+ ++... .|..-|...+-.|. .|++.
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D-~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~y-LgkiS 214 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDD-PNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFY-LGKIS 214 (297)
T ss_pred eecCchHhhHHHHHHHHhcC-CCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHH-Hhhcc
Confidence 55789999988777776654 22332 3333322 234566665443 33433 23333433333322 12221
Q ss_pred HHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 212 DGATYFRKMVDSGLRPN-------LAVYNRLVGKLVQVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 212 ~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 257 (407)
...+++++.... ..+ ..+|--|++.+...|+.++|..+|+-.+.
T Consensus 215 -~e~l~~~~~a~a-~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 215 -EETLMERLKADA-TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred -HHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 123344444321 111 34788889999999999999999998876
No 263
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.96 E-value=0.66 Score=42.71 Aligned_cols=158 Identities=18% Similarity=0.226 Sum_probs=97.9
Q ss_pred HHHHhcCChhhHHHHHH--HHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHH
Q 015416 18 LGFVRDGDSDGVFRLFE--ELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALC 95 (407)
Q Consensus 18 ~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (407)
....-.|+++.+.++.. ++.. .+| ....+.++..+-+.|.++.|+++-.. .. .-.....
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~---~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D-----------~~---~rFeLAl 329 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP---NIP--KDQGQSIARFLEKKGYPELALQFVTD-----------PD---HRFELAL 329 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG---G----HHHHHHHHHHHHHTT-HHHHHHHSS------------HH---HHHHHHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcc---cCC--hhHHHHHHHHHHHCCCHHHHHhhcCC-----------hH---HHhHHHH
Confidence 44556789999877775 2221 233 44578888888899999999887432 21 1233456
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 015416 96 NNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGML 175 (407)
Q Consensus 96 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 175 (407)
+.|+++.|.++.++.. +...|..|.....++|+++-|++.|.+... |..|+-.|.-.|+.
T Consensus 330 ~lg~L~~A~~~a~~~~-----------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~ 389 (443)
T PF04053_consen 330 QLGNLDIALEIAKELD-----------DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDR 389 (443)
T ss_dssp HCT-HHHHHHHCCCCS-----------THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-H
T ss_pred hcCCHHHHHHHHHhcC-----------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCH
Confidence 7888888877654322 445788888888888888888888877654 34566667778888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015416 176 AEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKM 220 (407)
Q Consensus 176 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 220 (407)
+...++.+.....|- ++....++...|+.++..+++.+.
T Consensus 390 ~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 390 EKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 777777777776652 455566666778877777776554
No 264
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.95 E-value=0.11 Score=41.10 Aligned_cols=101 Identities=13% Similarity=0.027 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHH-
Q 015416 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNS- 89 (407)
Q Consensus 11 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~- 89 (407)
..+..+...|.+.||.+.|++.|.++.+...+...-...+..+++.....+++..+.....++...-.. ..+....+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~-~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK-GGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-cchHHHHHHH
Confidence 457889999999999999999999998863233334567788899999999999999998887654211 111221111
Q ss_pred -H--HHHHHhcCCHHHHHHHHHHHHh
Q 015416 90 -V--LDALCNNGKFDEALKLFDRMKN 112 (407)
Q Consensus 90 -l--~~~~~~~~~~~~A~~~~~~~~~ 112 (407)
. +-.+...+++..|-+.|-....
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCc
Confidence 1 1224456888888888876543
No 265
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.93 E-value=0.22 Score=39.36 Aligned_cols=85 Identities=18% Similarity=0.086 Sum_probs=37.0
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCc
Q 015416 240 VQVGMLDEAKSFFDIMVKKLKMDD-----ASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGR 314 (407)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 314 (407)
...|++++|..-|...+...|+.. ..|..-..++.+.+.++.|+.-..+.++.+ +........-+.+|.+..+
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHhhhh
Confidence 344444444444444444333321 223333344444555555555554444432 2222233333444555555
Q ss_pred HHHHHHHHHHHH
Q 015416 315 EEEVVKLMEKKE 326 (407)
Q Consensus 315 ~~~A~~~~~~~~ 326 (407)
+++|++-|+++.
T Consensus 184 ~eealeDyKki~ 195 (271)
T KOG4234|consen 184 YEEALEDYKKIL 195 (271)
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 266
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.77 E-value=0.15 Score=43.09 Aligned_cols=79 Identities=16% Similarity=0.257 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCcHHHHHHH
Q 015416 230 AVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD----GGIEFSEELQEFV 305 (407)
Q Consensus 230 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~l 305 (407)
.++..++..+...|+++.+...++++....|.+...|..++.+|.+.|+...|+..|+++.+. -|+.|..+.....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 366778888999999999999999999988889999999999999999999999999888763 3777887776665
Q ss_pred HHH
Q 015416 306 KGE 308 (407)
Q Consensus 306 ~~~ 308 (407)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 554
No 267
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.74 E-value=0.77 Score=36.32 Aligned_cols=98 Identities=19% Similarity=0.199 Sum_probs=64.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhh
Q 015416 235 LVGKLVQVGMLDEAKSFFDIMVKKLKM---DDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSK 311 (407)
Q Consensus 235 l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 311 (407)
+...+...+++++|...++........ ...+-..|.+.....|.+++|+..+...... .........-++.+..
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~---~w~~~~~elrGDill~ 171 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE---SWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc---cHHHHHHHHhhhHHHH
Confidence 445667788888888888777652111 1223445666777788888888888776553 3444455566778888
Q ss_pred cCcHHHHHHHHHHHHHhhHHHHHH
Q 015416 312 EGREEEVVKLMEKKEREKAEAKAR 335 (407)
Q Consensus 312 ~g~~~~A~~~~~~~~~~~~~~~~~ 335 (407)
.|+.++|..-|++..........+
T Consensus 172 kg~k~~Ar~ay~kAl~~~~s~~~~ 195 (207)
T COG2976 172 KGDKQEARAAYEKALESDASPAAR 195 (207)
T ss_pred cCchHHHHHHHHHHHHccCChHHH
Confidence 888888888888877665333333
No 268
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.73 E-value=0.54 Score=34.52 Aligned_cols=141 Identities=12% Similarity=0.159 Sum_probs=79.3
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015416 171 KNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKS 250 (407)
Q Consensus 171 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 250 (407)
-.|..++..++..+.... .+..-++.++--....-+-+-..++++..-+. .|. ..+|+......
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDi----------s~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDI----------SKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-G----------GG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------hhhcchHHHHH
Confidence 356667777777766653 24445555555554444444444444444321 111 12233333333
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhH
Q 015416 251 FFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKA 330 (407)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 330 (407)
.+-.+ ..+.......+..+...|+-+.-.+++..+.+. -.++++....++.+|.+.|+..++.+++.+.-+.|.
T Consensus 78 C~~~~----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn--~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 78 CYAKR----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKN--EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHT----T---HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHh----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33221 124445566677888899999999999888763 278888889999999999999999999999988886
Q ss_pred HHH
Q 015416 331 EAK 333 (407)
Q Consensus 331 ~~~ 333 (407)
+..
T Consensus 152 kEA 154 (161)
T PF09205_consen 152 KEA 154 (161)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
No 269
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.70 E-value=0.71 Score=35.70 Aligned_cols=124 Identities=15% Similarity=0.177 Sum_probs=64.1
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH-HHHHH--HHHHHH
Q 015416 95 CNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTL-SFNNL--IDQLCK 171 (407)
Q Consensus 95 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~ 171 (407)
.+.+..++|+.-|..+.+.|...- ...............|+...|...|+++-.-...|... -..-| .-.+..
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~Y----pvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSY----PVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcc----hHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc
Confidence 445556666666666665554320 22233444555566666666666666665433222222 11111 112345
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015416 172 NGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVD 222 (407)
Q Consensus 172 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 222 (407)
.|.+++.....+-+-..+.+--...-..|.-+-.+.|++.+|.+.|..+..
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 566666666666555444333344455555566666666666666666654
No 270
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.60 E-value=1.7 Score=39.24 Aligned_cols=116 Identities=11% Similarity=0.114 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHh-cCCC----CHHHHHHHHH--HHHh
Q 015416 210 VDDGATYFRKMVDSGLRPNLAVYNRLV----GKLVQ---VGMLDEAKSFFDIMVK-KLKM----DDASYKFMMK--ALSD 275 (407)
Q Consensus 210 ~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~-~~~~----~~~~~~~l~~--~~~~ 275 (407)
-++|+.+++.+++.. +-|...-|.+. +.|.+ ...+..-.++-+-+.+ +.+| +...-+.+.. .+..
T Consensus 396 dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 396 DEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred cHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 677888888777632 22333222221 22222 1222333333222222 4544 2334444444 3567
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 276 GGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 276 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
.|++.++.-.-.-+.+ +.|++.+|..++-++....++++|...+.+++-..
T Consensus 475 qgey~kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~ 525 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPPNE 525 (549)
T ss_pred cccHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCCch
Confidence 8999988766555554 68999999999999999999999999999998643
No 271
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.48 E-value=0.78 Score=34.70 Aligned_cols=125 Identities=15% Similarity=0.187 Sum_probs=64.2
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHH
Q 015416 14 SYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDA 93 (407)
Q Consensus 14 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (407)
..++..+...+........++.+... + +.+...++.++..|++. +..+.++.+.. .. +......+++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~--~-~~~~~~~~~li~ly~~~-~~~~ll~~l~~---~~-----~~yd~~~~~~~ 78 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKL--N-SENPALQTKLIELYAKY-DPQKEIERLDN---KS-----NHYDIEKVGKL 78 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHcc--C-ccchhHHHHHHHHHHHH-CHHHHHHHHHh---cc-----ccCCHHHHHHH
Confidence 34556666666666667766666664 3 34555666666666654 23344444432 11 22333445666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 015416 94 LCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQ-GRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLC 170 (407)
Q Consensus 94 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 170 (407)
|.+.+.++++.-++.++.. +...+..+... ++++.|.+++.+. .+...|..++..+.
T Consensus 79 c~~~~l~~~~~~l~~k~~~--------------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 79 CEKAKLYEEAVELYKKDGN--------------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred HHHcCcHHHHHHHHHhhcC--------------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 6666666666666655421 22233333333 5566666655541 24445555554443
No 272
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.06 E-value=1.1 Score=33.91 Aligned_cols=85 Identities=11% Similarity=0.162 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 015416 128 NVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEV 207 (407)
Q Consensus 128 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 207 (407)
..++..+...+.+.....+++.+...+ +.+....+.++..|++.+ ..+....+.. .++......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 345555555555666666666655554 244555556666665442 2233333321 11222233345555555
Q ss_pred CChHHHHHHHHHH
Q 015416 208 NRVDDGATYFRKM 220 (407)
Q Consensus 208 g~~~~a~~~~~~~ 220 (407)
+.++++.-++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5555555555443
No 273
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.02 E-value=0.06 Score=29.62 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=13.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 015416 50 YGSLMKGYFMKGMEEEAMECYNEA 73 (407)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~ 73 (407)
|..|+.+|.+.|++++|+++|+++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555555555555555555553
No 274
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.00 E-value=0.035 Score=30.11 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=12.2
Q ss_pred HhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 015416 256 VKKLKMDDASYKFMMKALSDGGKLDEI 282 (407)
Q Consensus 256 ~~~~~~~~~~~~~l~~~~~~~g~~~~A 282 (407)
++..|.++.+|..+...|...|++++|
T Consensus 6 ie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 6 IELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 333344444444444444444444444
No 275
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.95 E-value=1.3 Score=35.09 Aligned_cols=95 Identities=14% Similarity=0.061 Sum_probs=52.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 015416 90 VLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQL 169 (407)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 169 (407)
+...+...+++++|...++..+..-... .....+-..|.......|.+++|+..++.....+ -.......-++++
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De---~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~--w~~~~~elrGDil 169 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDE---NLKALAALRLARVQLQQKKADAALKTLDTIKEES--WAAIVAELRGDIL 169 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhH---HHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--HHHHHHHHhhhHH
Confidence 4455666666666666666665431110 0011222334556666667777776666655432 1223344455666
Q ss_pred HHcCCHHHHHHHHHHHHhCC
Q 015416 170 CKNGMLAEAEELYGEMSDKG 189 (407)
Q Consensus 170 ~~~g~~~~a~~~~~~~~~~~ 189 (407)
...|+-++|..-|.+.++.+
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc
Confidence 66777777777777666653
No 276
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.86 E-value=2.2 Score=41.52 Aligned_cols=119 Identities=16% Similarity=0.296 Sum_probs=52.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015416 88 NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLID 167 (407)
Q Consensus 88 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 167 (407)
..-+..+.+..-++.|+.+-.. .+..++. -.......++.+.+.|++++|...|-+.+.. +.|+ .++.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~---~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~ 405 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKS---QHLDEDT---LAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIK 405 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHh---cCCCHHH---HHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHH
Confidence 3445555555555555544332 1211111 1112223334444555555555555444332 1111 1233
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 015416 168 QLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRK 219 (407)
Q Consensus 168 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 219 (407)
-|....+...-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+.
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhc
Confidence 334444444455555555555543 333344555556565555554444433
No 277
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.83 E-value=0.22 Score=41.57 Aligned_cols=73 Identities=21% Similarity=0.187 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC----------------CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015416 138 GRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNG----------------MLAEAEELYGEMSDKGVNPDEYTYGLLM 201 (407)
Q Consensus 138 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 201 (407)
+.++-.-..++.|.+.|+..|..+|+.|++.+-+-. +-+-++.++++|...|+.||..+-..++
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv 165 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV 165 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 344545555667777777778888877777654322 2345788888999889999988888888
Q ss_pred HHHHhcCCh
Q 015416 202 DACFEVNRV 210 (407)
Q Consensus 202 ~~~~~~g~~ 210 (407)
+++.+.+..
T Consensus 166 n~FGr~~~p 174 (406)
T KOG3941|consen 166 NAFGRWNFP 174 (406)
T ss_pred HHhcccccc
Confidence 888776653
No 278
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.82 E-value=5.3 Score=40.67 Aligned_cols=57 Identities=16% Similarity=0.015 Sum_probs=28.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 235 LVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 235 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
.+.+|..+|+|.+|+.+..++..+..--..+-..|+.-+...+++-+|-++..+...
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 344555566666666655555431111111224455555566666666666555544
No 279
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.81 E-value=1.4 Score=33.86 Aligned_cols=56 Identities=16% Similarity=-0.014 Sum_probs=38.9
Q ss_pred HHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 015416 19 GFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGEN 77 (407)
Q Consensus 19 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 77 (407)
.-.+.++.+.+..++..+.-..| ..+..-..-...+...|+|.+|+.+|+.+....
T Consensus 19 ~al~~~~~~D~e~lL~ALrvLRP---~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVLRP---EFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHccCChHHHHHHHHHHHHhCC---CchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 33567788888888888876422 233344445566778888999999888887654
No 280
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.78 E-value=0.43 Score=40.48 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015416 127 FNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEM 185 (407)
Q Consensus 127 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 185 (407)
+..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 3344444444555555555555554443 334445555555555555555555544444
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.70 E-value=0.083 Score=29.03 Aligned_cols=23 Identities=9% Similarity=0.170 Sum_probs=11.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 015416 266 YKFMMKALSDGGKLDEILEIVGG 288 (407)
Q Consensus 266 ~~~l~~~~~~~g~~~~A~~~~~~ 288 (407)
+..|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444555555555555555554
No 282
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.53 E-value=3.8 Score=37.68 Aligned_cols=160 Identities=14% Similarity=0.116 Sum_probs=76.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACF 205 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 205 (407)
...+++..+.....+.-...+..+|+..| .+...|..++.+|... ..++-..+|+++.+..+. |...-..|...|
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y- 142 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY- 142 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH-
Confidence 44455555555555555555555555544 4555555566665555 345555555555554322 222222233333
Q ss_pred hcCChHHHHHHHHHHHHCCCCC--C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhcCC
Q 015416 206 EVNRVDDGATYFRKMVDSGLRP--N---LAVYNRLVGKLVQVGMLDEAKSFFDIMVK--KLKMDDASYKFMMKALSDGGK 278 (407)
Q Consensus 206 ~~g~~~~a~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 278 (407)
..++.+.+..+|.++..+-++. + ...|..|...- ..+.+....+..++.. +...-...+..+-.-|....+
T Consensus 143 Ekik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 143 EKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred HHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 3355555555555555431110 0 11333332211 2344445555555444 222333444444555566666
Q ss_pred HHHHHHHHHHHHhc
Q 015416 279 LDEILEIVGGILDD 292 (407)
Q Consensus 279 ~~~A~~~~~~~~~~ 292 (407)
+++|++++..+++.
T Consensus 221 ~~eai~Ilk~il~~ 234 (711)
T COG1747 221 WTEAIRILKHILEH 234 (711)
T ss_pred HHHHHHHHHHHhhh
Confidence 66666666666554
No 283
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.53 E-value=0.35 Score=41.60 Aligned_cols=91 Identities=12% Similarity=0.062 Sum_probs=51.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 015416 200 LMDACFEVNRVDDGATYFRKMVDSGLRP-NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGK 278 (407)
Q Consensus 200 l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 278 (407)
-.+.|.+.|.+++|+.+|...... .| +.+++..-..+|.+..++..|+.-....+.....-..+|..-+.+-...|.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 345566666666666666666552 33 556666666666666666666555555544322233344444444444555
Q ss_pred HHHHHHHHHHHHhc
Q 015416 279 LDEILEIVGGILDD 292 (407)
Q Consensus 279 ~~~A~~~~~~~~~~ 292 (407)
..+|.+-++.++..
T Consensus 181 ~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 181 NMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHhHHHHHhh
Confidence 55565555555553
No 284
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.44 E-value=0.048 Score=29.55 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=9.4
Q ss_pred chhhHHHHHHHHHhcCCHHHH
Q 015416 83 SAVANNSVLDALCNNGKFDEA 103 (407)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~A 103 (407)
+..+|..+..+|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 344444444444444444444
No 285
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.39 E-value=1.8 Score=33.28 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=23.3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 206 EVNRVDDGATYFRKMVDSGLRPNLA-VYNRLVGKLVQVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 206 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 257 (407)
..++.+++..++.-+.- ++|... .-..-+..+...|+|.+|..+|+.+..
T Consensus 22 ~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 44455555555555544 233332 222223344455555555555555444
No 286
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.39 E-value=0.56 Score=39.33 Aligned_cols=89 Identities=16% Similarity=0.125 Sum_probs=69.2
Q ss_pred CCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------CChHHHHH
Q 015416 157 PDTLSFNNLIDQLCKN-----GMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEV----------------NRVDDGAT 215 (407)
Q Consensus 157 ~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------------g~~~~a~~ 215 (407)
.|..+|-..+..+... +..+=....++.|.+.|+.-|..+|..|++.+-+. .+-+-+++
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 4666676666666543 45566666778888899999999999998876432 23456899
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 015416 216 YFRKMVDSGLRPNLAVYNRLVGKLVQVGML 245 (407)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 245 (407)
++++|..+|+-||..+-..|+.+|.+.+..
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 999999999999999999999999987764
No 287
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.29 E-value=1.6 Score=34.68 Aligned_cols=57 Identities=16% Similarity=0.107 Sum_probs=27.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 236 VGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 236 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
..++.+.+.++.|+.-..+.++..|....+...-..+|-+...+++|+.-|.++.+.
T Consensus 141 aaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 141 AAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 334444444444444444444433333333344444555555555555555555553
No 288
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.28 E-value=2.8 Score=35.09 Aligned_cols=212 Identities=9% Similarity=0.097 Sum_probs=109.7
Q ss_pred CccCCcchHHHHHHHH-HHcCCHHHHHHHHHHHHhCCCCCCCchh---hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 015416 42 GVVSDGVVYGSLMKGY-FMKGMEEEAMECYNEAVGENSSVKMSAV---ANNSVLDALCNNGKFDEALKLFDRMKNEHNPP 117 (407)
Q Consensus 42 ~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 117 (407)
+..||+..-|..-..- .+...+++|+.-|++.++..+ ....+ +...++..+.+.+++++....|.+++.--...
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEg--EKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA 98 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEG--EKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA 98 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhccc--ccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 4456665544432221 234577888888888776542 22222 33445677778888888888887776421000
Q ss_pred CccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--
Q 015416 118 KRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY-RCSPDTL----SFNNLIDQLCKNGMLAEAEELYGEMSDKGV-- 190 (407)
Q Consensus 118 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-- 190 (407)
.....+..+.|++++.-....+.+....+|+.-+.. .-..+.. |-.-+...|...+.+.+..++++++...--
T Consensus 99 VTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 99 VTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE 178 (440)
T ss_pred HhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc
Confidence 001113445566666655555555555555443221 0011222 224466667777777777777777654311
Q ss_pred --CCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHH----HHHHHhcCCHHHHHHHHHHH
Q 015416 191 --NPD-------EYTYGLLMDACFEVNRVDDGATYFRKMVD-SGLRPNLAVYNRL----VGKLVQVGMLDEAKSFFDIM 255 (407)
Q Consensus 191 --~p~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l----~~~~~~~g~~~~A~~~~~~~ 255 (407)
..| ...|..-+..|....+-.+-..+|++.+. ...-|.+.+...+ +....+.|.+++|..-|-++
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHH
Confidence 111 23455556666666666666667766652 1123444333322 22344567777665444333
No 289
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.25 E-value=0.093 Score=28.26 Aligned_cols=28 Identities=39% Similarity=0.527 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 015416 49 VYGSLMKGYFMKGMEEEAMECYNEAVGE 76 (407)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 76 (407)
+|..++.+|...|++++|+..|+++++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4555555555566666666666555554
No 290
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.19 E-value=3.3 Score=40.41 Aligned_cols=218 Identities=14% Similarity=0.093 Sum_probs=132.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHhh--CC----------c--cCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 015416 12 VYSYLMLGFVRDGDSDGVFRLFEELKEKL--GG----------V--VSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGEN 77 (407)
Q Consensus 12 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~----------~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 77 (407)
..+.++.+|...+.+-.=.-++..+.+.. .+ + .-..-....-+..+.+..-++-|+.+-+.-...
T Consensus 285 s~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d- 363 (933)
T KOG2114|consen 285 SSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQHLD- 363 (933)
T ss_pred chhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcCCC-
Confidence 34667777777776544334444333320 01 0 011223455677777778888888775543211
Q ss_pred CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 015416 78 SSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSP 157 (407)
Q Consensus 78 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 157 (407)
...-.......+.-+.+.|++++|...|-+.+..- .| ..++.-|....+...-..+++.+.+.|+ .
T Consensus 364 --~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~----------s~Vi~kfLdaq~IknLt~YLe~L~~~gl-a 429 (933)
T KOG2114|consen 364 --EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP----------SEVIKKFLDAQRIKNLTSYLEALHKKGL-A 429 (933)
T ss_pred --HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch----------HHHHHHhcCHHHHHHHHHHHHHHHHccc-c
Confidence 11112234445566678899999998887766431 11 2355667777777888888999998885 5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 015416 158 DTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVG 237 (407)
Q Consensus 158 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 237 (407)
+...-..|+.+|.+.++.++-.++.+.-- .|.. ..-....+..|.+.+-.++|.-+-.+... +......
T Consensus 430 ~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~i--- 498 (933)
T KOG2114|consen 430 NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDI--- 498 (933)
T ss_pred cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHH---
Confidence 66677789999999999888777766544 2221 11234566667777777777665554432 2233333
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 015416 238 KLVQVGMLDEAKSFFDIM 255 (407)
Q Consensus 238 ~~~~~g~~~~A~~~~~~~ 255 (407)
.+-..|++++|++++..+
T Consensus 499 lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 499 LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHhcCHHHHHHHHhcC
Confidence 345578899999888765
No 291
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.12 E-value=2.1 Score=33.19 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=25.4
Q ss_pred HhcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 240 VQVGMLDEAKSFFDIMVK-KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
...|.++......+.+.. +.+.-...-..|.-+-.+.|++..|.+.|..+...
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 344555555444444433 22223334444555555555555555555555543
No 292
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.04 E-value=5.9 Score=38.00 Aligned_cols=83 Identities=14% Similarity=0.072 Sum_probs=38.8
Q ss_pred hcCChhhHHHHHHHHHH-------hhCCccCCcchHHHHHHHHHHcC-----CHHHHHHHHHHHHhCCCCCCCchhhHHH
Q 015416 22 RDGDSDGVFRLFEELKE-------KLGGVVSDGVVYGSLMKGYFMKG-----MEEEAMECYNEAVGENSSVKMSAVANNS 89 (407)
Q Consensus 22 ~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (407)
...|++.|+..|+.+.+ + + .+.....+..+|.+.. +...|+.+|.+.-..+ .|+... .
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~--~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g---~~~a~~--~ 330 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATK--G---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG---NPDAQY--L 330 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhh--c---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC---CchHHH--H
Confidence 34455666666655544 2 2 3334455555555432 4455555555555554 222222 2
Q ss_pred HHHHHHhc---CCHHHHHHHHHHHHhcC
Q 015416 90 VLDALCNN---GKFDEALKLFDRMKNEH 114 (407)
Q Consensus 90 l~~~~~~~---~~~~~A~~~~~~~~~~~ 114 (407)
+..++... .+...|.++|......|
T Consensus 331 lg~~~~~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 331 LGVLYETGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred HHHHHHcCCccccHHHHHHHHHHHHHcC
Confidence 22222222 23455555555555554
No 293
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.91 E-value=0.72 Score=36.81 Aligned_cols=82 Identities=17% Similarity=0.180 Sum_probs=57.3
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHh
Q 015416 57 YFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCG 136 (407)
Q Consensus 57 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 136 (407)
+.+.|+ +.|...|-.+...+ .--++... ..+..|....+.++++.++.++.+.....+ .+++..+..|+..|.+
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~--~l~t~elq-~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~--~~n~eil~sLas~~~~ 190 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTP--ELETAELQ-YALATYYTKRDPEKTIQLLLRALELSNPDD--NFNPEILKSLASIYQK 190 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCC--CCCCHHHH-HHHHHHHHccCHHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHH
Confidence 344444 67788887877665 23344444 444455557889999999999887654432 3388899999999999
Q ss_pred cCCHHHHH
Q 015416 137 QGRFKDAI 144 (407)
Q Consensus 137 ~g~~~~A~ 144 (407)
.|+++.|-
T Consensus 191 ~~~~e~AY 198 (203)
T PF11207_consen 191 LKNYEQAY 198 (203)
T ss_pred hcchhhhh
Confidence 99998875
No 294
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.90 E-value=2.7 Score=38.30 Aligned_cols=287 Identities=11% Similarity=0.065 Sum_probs=152.9
Q ss_pred HHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHH--HHHHHHHHhCC---------CCCCCchhh
Q 015416 18 LGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEA--MECYNEAVGEN---------SSVKMSAVA 86 (407)
Q Consensus 18 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~~~~~~---------~~~~~~~~~ 86 (407)
..-...+.++..++++..+... |.......++.-...|.+.|..... ++-++.+...- .+..-....
T Consensus 25 ~~~f~~~~~d~cl~~l~~l~t~--~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~ 102 (696)
T KOG2471|consen 25 HEQFNNSEFDRCLELLQELETR--GESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVM 102 (696)
T ss_pred HhccCCcchHHHHHHHHHHHhc--cccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHH
Confidence 3334567899999999999988 7666677788888888888776532 22222221110 000111112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHH---HHHhhCC---------
Q 015416 87 NNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVF---RKMGEYR--------- 154 (407)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~---~~~~~~~--------- 154 (407)
+-...-.|.....+..|+++.......-..... ..-..+.......+....+.++|+.++ .++...+
T Consensus 103 ~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~-~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~ 181 (696)
T KOG2471|consen 103 DYNFAVIFYHHEENGSAMQLSSNLVSRTESLES-SSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHI 181 (696)
T ss_pred hhhhheeeeeHhhcchHHHhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 222222344445555666655544332100000 000112223344555666667776554 4443321
Q ss_pred --------CCCCHHH------------HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChHHH
Q 015416 155 --------CSPDTLS------------FNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTY-GLLMDACFEVNRVDDG 213 (407)
Q Consensus 155 --------~~~~~~~------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~a 213 (407)
.+|+... ...-+.+|........+..-.+.... +.-+...+ ..--..+.-.|++.+|
T Consensus 182 ~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn--~a~~s~~~l~LKsq~eY~~gn~~kA 259 (696)
T KOG2471|consen 182 PANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMN--IAQDSSMALLLKSQLEYAHGNHPKA 259 (696)
T ss_pred chhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhh--hcCCCcHHHHHHHHHHHHhcchHHH
Confidence 0111111 11112233333333333322222221 11122122 2222345667889998
Q ss_pred HHHHHHHH---HCCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------cCCCC----------HHHHH
Q 015416 214 ATYFRKMV---DSGL--RP---NLAVYNRLVGKLVQVGMLDEAKSFFDIMVK--------KLKMD----------DASYK 267 (407)
Q Consensus 214 ~~~~~~~~---~~~~--~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~----------~~~~~ 267 (407)
.+++-..- ..|. .| ....||.|+..+.+.|.+..+..+|.+... +..|. .....
T Consensus 260 ~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilY 339 (696)
T KOG2471|consen 260 MKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILY 339 (696)
T ss_pred HHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHH
Confidence 88876543 2221 12 123568888888889999888888887774 33332 23345
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhh
Q 015416 268 FMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSK 311 (407)
Q Consensus 268 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 311 (407)
..+..|...|++-.|.+.|.+....+ ..++..|..|+.++.-
T Consensus 340 NcG~~~Lh~grPl~AfqCf~~av~vf--h~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 340 NCGLLYLHSGRPLLAFQCFQKAVHVF--HRNPRLWLRLAECCIM 381 (696)
T ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHH
Confidence 56778889999999999999999874 7788889888887653
No 295
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.51 E-value=2.3 Score=31.42 Aligned_cols=140 Identities=15% Similarity=0.263 Sum_probs=72.5
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhc
Q 015416 58 FMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQ 137 (407)
Q Consensus 58 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 137 (407)
.-.|..++..++..+..... +..-+|-++--....-+-+-..+.++.+-+.- |.. .+
T Consensus 13 ildG~V~qGveii~k~v~Ss-----ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiF--------Dis----------~C 69 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS-----NIKEYNWVICNIIDAADCDYVVETLDSIGKIF--------DIS----------KC 69 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS------HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS---------GG----------G-
T ss_pred HHhchHHHHHHHHHHHcCcC-----CccccceeeeecchhhchhHHHHHHHHHhhhc--------Cch----------hh
Confidence 34577778888877777644 23333334433333334444444444443321 211 12
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 015416 138 GRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYF 217 (407)
Q Consensus 138 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 217 (407)
|++......+-.+- .+.......+......|+-++-.+++..+.+. -.+++.....+..+|.+.|+..++.+++
T Consensus 70 ~NlKrVi~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell 143 (161)
T PF09205_consen 70 GNLKRVIECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELL 143 (161)
T ss_dssp S-THHHHHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred cchHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHH
Confidence 33333333222221 23444555667777788888888888887653 3667777778888888888888888888
Q ss_pred HHHHHCCCC
Q 015416 218 RKMVDSGLR 226 (407)
Q Consensus 218 ~~~~~~~~~ 226 (407)
.++.+.|++
T Consensus 144 ~~ACekG~k 152 (161)
T PF09205_consen 144 KEACEKGLK 152 (161)
T ss_dssp HHHHHTT-H
T ss_pred HHHHHhchH
Confidence 888887753
No 296
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.47 E-value=0.16 Score=27.24 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 015416 49 VYGSLMKGYFMKGMEEEAMECYNEAVGE 76 (407)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 76 (407)
.|..++.++...|++++|++.|++++..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3445555555555555555555555543
No 297
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.31 E-value=2.4 Score=34.81 Aligned_cols=116 Identities=18% Similarity=0.107 Sum_probs=73.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCH
Q 015416 168 QLCKNGMLAEAEELYGEMSDKGVNPDE-YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLA-VYNRLVGKLVQVGML 245 (407)
Q Consensus 168 ~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~ 245 (407)
-|....+++.|+..|.+.+. +.|+. .-|+.-+.++.+..+++.+..--.+.++ +.||.. ....+...+.....+
T Consensus 19 k~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccc
Confidence 45556678888888877776 45665 4566677777888888888877777777 456655 455566777778888
Q ss_pred HHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015416 246 DEAKSFFDIMVK-----KLKMDDASYKFMMKALSDGGKLDEILEIVG 287 (407)
Q Consensus 246 ~~A~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 287 (407)
++|+..+.+..+ ..++.......|..+=-..=...+..++.+
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 888888888755 233333444444443333333334444433
No 298
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.21 E-value=0.28 Score=26.29 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 015416 85 VANNSVLDALCNNGKFDEALKLFDRMKNEH 114 (407)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 114 (407)
.+|..++.+|...|++++|+..|+++++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 356677777777888888888887777654
No 299
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=93.14 E-value=0.99 Score=36.40 Aligned_cols=79 Identities=13% Similarity=0.046 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHH
Q 015416 12 VYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVL 91 (407)
Q Consensus 12 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (407)
|.+..++.+.+.+.+.+++.+.++-++. .|.|...-..++..++-.|+|++|..-++-+-...+...+....|..++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka---kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~li 79 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA---KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLI 79 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc---CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence 3455567777888888888888777763 4557777778888888888888888877777666555556666677766
Q ss_pred HH
Q 015416 92 DA 93 (407)
Q Consensus 92 ~~ 93 (407)
++
T Consensus 80 r~ 81 (273)
T COG4455 80 RC 81 (273)
T ss_pred HH
Confidence 54
No 300
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.05 E-value=2 Score=36.73 Aligned_cols=96 Identities=18% Similarity=0.160 Sum_probs=55.7
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015416 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYR---CSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLM 201 (407)
Q Consensus 125 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 201 (407)
.+...++..-....+++.++..+-++...- ..|+... .++++.+. .-++++++.++..=+..|+-||..+++.++
T Consensus 65 ~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~ 142 (418)
T KOG4570|consen 65 LTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLM 142 (418)
T ss_pred eehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHH
Confidence 344445555555666777777766665421 1111111 12223222 234567777777667777777777777777
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 015416 202 DACFEVNRVDDGATYFRKMVD 222 (407)
Q Consensus 202 ~~~~~~g~~~~a~~~~~~~~~ 222 (407)
+.+.+.+++.+|.++...|..
T Consensus 143 D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 143 DSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHhcccHHHHHHHHHHHHH
Confidence 777777777777777666664
No 301
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.00 E-value=0.43 Score=41.09 Aligned_cols=93 Identities=14% Similarity=0.056 Sum_probs=68.1
Q ss_pred HHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhc
Q 015416 18 LGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNN 97 (407)
Q Consensus 18 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 97 (407)
.-|.++|.+++|+++|..-... .|-++.++..-..+|.+...+..|..-...++..+ ..-.-+|..-+.+-...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~---~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd---~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV---YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD---KLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc---CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh---HHHHHHHHHHHHHHHHH
Confidence 3577889999999999888763 34488899999999999999998888888877765 33344455555555556
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 015416 98 GKFDEALKLFDRMKNEHNP 116 (407)
Q Consensus 98 ~~~~~A~~~~~~~~~~~~~ 116 (407)
|...+|.+-++.+++..+.
T Consensus 179 g~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPK 197 (536)
T ss_pred hhHHHHHHhHHHHHhhCcc
Confidence 6777777777777765443
No 302
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.93 E-value=9.8 Score=37.12 Aligned_cols=292 Identities=13% Similarity=0.094 Sum_probs=161.1
Q ss_pred hhHHHHHHHHHHhhCCccCC--cchHHHHHHHHH-HcCCHHHHHHHHHHHHhCCCCCCCch-----hhHHHHHHHHHhcC
Q 015416 27 DGVFRLFEELKEKLGGVVSD--GVVYGSLMKGYF-MKGMEEEAMECYNEAVGENSSVKMSA-----VANNSVLDALCNNG 98 (407)
Q Consensus 27 ~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~ 98 (407)
..|+.+++.+.+. ...+|. ..++..++..+. ...+++.|...+++...... .++. .....++..+.+.+
T Consensus 38 ~~ai~CL~~~~~~-~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~--~~~~~d~k~~~~~ll~~i~~~~~ 114 (608)
T PF10345_consen 38 ATAIKCLEAVLKQ-FKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCE--RHRLTDLKFRCQFLLARIYFKTN 114 (608)
T ss_pred HHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHHHHHHhcC
Confidence 3567777777742 134443 345666777776 67999999999998865441 1111 12234567777777
Q ss_pred CHHHHHHHHHHHHhcCCCCCccccccchHHHH-HHHHHhcCCHHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHH--Hc
Q 015416 99 KFDEALKLFDRMKNEHNPPKRLAVNLGSFNVM-ADGYCGQGRFKDAIEVFRKMGEYR---CSPDTLSFNNLIDQLC--KN 172 (407)
Q Consensus 99 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~ 172 (407)
... |.+.+++.++.-.... ..+-...|..+ +..+...+++..|.+.++.+...- ..|...++-.++.+.. +.
T Consensus 115 ~~~-a~~~l~~~I~~~~~~~-~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~ 192 (608)
T PF10345_consen 115 PKA-ALKNLDKAIEDSETYG-HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRR 192 (608)
T ss_pred HHH-HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcC
Confidence 666 9999988776532210 10022233333 333334489999999998886532 1233444444544443 45
Q ss_pred CCHHHHHHHHHHHHhCC---------CCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHH---C--CCC----------
Q 015416 173 GMLAEAEELYGEMSDKG---------VNPDEYTYGLLMDACF--EVNRVDDGATYFRKMVD---S--GLR---------- 226 (407)
Q Consensus 173 g~~~~a~~~~~~~~~~~---------~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~---~--~~~---------- 226 (407)
+..+++.+.++++.... ..|-..+|..++..++ ..|+++.+...++++.+ . ...
T Consensus 193 ~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~ 272 (608)
T PF10345_consen 193 GSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGS 272 (608)
T ss_pred CCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCee
Confidence 66777777777764311 1234556666766554 56776666665554432 1 000
Q ss_pred ---------------CC---------HHHHHHH--HHHHHhcCCHHHHHHHHHHHHh---cCC-------CC-------H
Q 015416 227 ---------------PN---------LAVYNRL--VGKLVQVGMLDEAKSFFDIMVK---KLK-------MD-------D 263 (407)
Q Consensus 227 ---------------~~---------~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~---~~~-------~~-------~ 263 (407)
+. ..+..-+ +-..+..+..+.|.+++++..+ ... +. .
T Consensus 273 i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~ 352 (608)
T PF10345_consen 273 IPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASER 352 (608)
T ss_pred EEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHh
Confidence 10 0111111 1223345555567666666555 111 10 1
Q ss_pred HHHHHHH---------HHHHhcCCHHHHHHHHHHHHhcCCCCCc-------HHHHHHHHHHHhhcCcHHHHHHHHH
Q 015416 264 ASYKFMM---------KALSDGGKLDEILEIVGGILDDGGIEFS-------EELQEFVKGELSKEGREEEVVKLME 323 (407)
Q Consensus 264 ~~~~~l~---------~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~ 323 (407)
..|...+ ...+-.|++..|...+..+.....-.|+ +..+...+-.+...|+.+.|...|.
T Consensus 353 ~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 353 IQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 1122222 2234578899999999988865321222 2333334445566799999999998
No 303
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=92.81 E-value=3.3 Score=34.05 Aligned_cols=119 Identities=13% Similarity=0.061 Sum_probs=81.3
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCh
Q 015416 133 GYCGQGRFKDAIEVFRKMGEYRCSPDTL-SFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDE-YTYGLLMDACFEVNRV 210 (407)
Q Consensus 133 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~ 210 (407)
.|.....+..|+..|.+.+..+ |+.. -|+.-+.++.+..+++.+..=-++.++ +.|+. .....+.........+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccc
Confidence 4666778899999888888754 6664 456777888889999998887777776 45553 3455566777788889
Q ss_pred HHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 211 DDGATYFRKMV----DSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIM 255 (407)
Q Consensus 211 ~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 255 (407)
+.|+.++.+.. +..+++...+...|..+--..=...+..++.+..
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 99999998874 3344444556666655544333444555555544
No 304
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.59 E-value=5.5 Score=33.41 Aligned_cols=124 Identities=15% Similarity=0.210 Sum_probs=60.7
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhC---CC--CCCHHHHHHHHHHHH
Q 015416 96 NNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY---RC--SPDTLSFNNLIDQLC 170 (407)
Q Consensus 96 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~~~~l~~~~~ 170 (407)
+...+++|+.-|+++++...... ...-.+...++..+.+.|++++....|.+++.. .+ .-+..+.|.++....
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKg--eWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiS 116 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKG--EWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIS 116 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccc--hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHh
Confidence 44567777777777777654431 112223444566677777777777777666431 00 123344555555444
Q ss_pred HcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 015416 171 KNGMLAEAEELYGEMSDK--GVNPD---EYTYGLLMDACFEVNRVDDGATYFRKMV 221 (407)
Q Consensus 171 ~~g~~~~a~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 221 (407)
...+.+-...+|+.-++. ..+.+ -.|-+.+...|...+.+.+..++++++.
T Consensus 117 tS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh 172 (440)
T KOG1464|consen 117 TSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLH 172 (440)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHH
Confidence 444444444444332210 00000 1123344555555555555555555544
No 305
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.57 E-value=10 Score=36.43 Aligned_cols=273 Identities=14% Similarity=0.102 Sum_probs=162.3
Q ss_pred hhhHHHHHHHHHHhhCCccCCcchHHHHHHHH-----HHcCCHHHHHHHHHHHHh-------CCCCCCCchhhHHHHHHH
Q 015416 26 SDGVFRLFEELKEKLGGVVSDGVVYGSLMKGY-----FMKGMEEEAMECYNEAVG-------ENSSVKMSAVANNSVLDA 93 (407)
Q Consensus 26 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~~~l~~~ 93 (407)
...|.+.++...+. | +......++.+| ....+++.|+.+|..+.. .+ .......+..+
T Consensus 228 ~~~a~~~~~~~a~~--g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~-----~~~a~~~lg~~ 297 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--G---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG-----LPPAQYGLGRL 297 (552)
T ss_pred hhHHHHHHHHHHhh--c---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc-----CCccccHHHHH
Confidence 45788888888776 4 444444444444 355789999999999876 33 33456677888
Q ss_pred HHhcC-----CHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 015416 94 LCNNG-----KFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQG---RFKDAIEVFRKMGEYRCSPDTLSFNNL 165 (407)
Q Consensus 94 ~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l 165 (407)
|.+.. +...|..++.+.-..+.+ .....+..+|.... ++..|.++|......| ....+-.+
T Consensus 298 Y~~g~~~~~~d~~~A~~~~~~aA~~g~~--------~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~l 366 (552)
T KOG1550|consen 298 YLQGLGVEKIDYEKALKLYTKAAELGNP--------DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRL 366 (552)
T ss_pred HhcCCCCccccHHHHHHHHHHHHhcCCc--------hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHH
Confidence 87753 667799999998888744 24455555555443 6789999999999887 33333333
Q ss_pred HHHHH----HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HH--
Q 015416 166 IDQLC----KNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLV-GK-- 238 (407)
Q Consensus 166 ~~~~~----~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~-- 238 (407)
..+|. -..+...|..++.+..+.| .|....-...+..+.. +.++.+.-.+..+.+.|... ..+-...+ ..
T Consensus 367 a~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~-~q~~a~~l~~~~~ 443 (552)
T KOG1550|consen 367 ALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEV-AQSNAAYLLDQSE 443 (552)
T ss_pred HHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhH-HhhHHHHHHHhcc
Confidence 33332 2347889999999999887 3332222233333333 77777777777777655332 11111111 11
Q ss_pred -HHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 015416 239 -LVQ----VGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDG----GKLDEILEIVGGILDDGGIEFSEELQEFVKGEL 309 (407)
Q Consensus 239 -~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (407)
... ..+...+...+.+... .-+......+...|... .+++.|...+....... ......+...+
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~-----~~~~~nlg~~~ 516 (552)
T KOG1550|consen 444 EDLFSRGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG-----AQALFNLGYMH 516 (552)
T ss_pred ccccccccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh-----hHHHhhhhhHH
Confidence 111 1244555666655543 33556666666666543 34778888888776642 33222333333
Q ss_pred hhc-C--cHHHHHHHHHHHHHhh
Q 015416 310 SKE-G--REEEVVKLMEKKEREK 329 (407)
Q Consensus 310 ~~~-g--~~~~A~~~~~~~~~~~ 329 (407)
..- | ++..|.+++++....+
T Consensus 517 e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 517 EHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred hcCcCcchhHHHHHHHHHHHhcC
Confidence 221 1 1567777777766544
No 306
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.54 E-value=2.6 Score=29.44 Aligned_cols=41 Identities=10% Similarity=0.122 Sum_probs=17.1
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 217 FRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 257 (407)
+..+....+.|++.+..+.+++|.+.+++..|.++|+.+..
T Consensus 33 lN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 33 LNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444444444
No 307
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.39 E-value=7.7 Score=34.61 Aligned_cols=65 Identities=6% Similarity=0.023 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015416 158 DTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNP---DEYTYGLLMDACFEVNRVDDGATYFRKMVD 222 (407)
Q Consensus 158 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 222 (407)
...+|..++..+.+.|.++.|...+..+...+... .+.....-+...-..|+..+|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34467777777777888888877777776533111 233444455666667777777777776665
No 308
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.03 E-value=14 Score=36.70 Aligned_cols=198 Identities=12% Similarity=0.018 Sum_probs=112.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCC----HH---HHHHHHH-HHHHcCCHHHHHHHHHHHHhC----CCCCCHHHHH
Q 015416 131 ADGYCGQGRFKDAIEVFRKMGEYRCSPD----TL---SFNNLID-QLCKNGMLAEAEELYGEMSDK----GVNPDEYTYG 198 (407)
Q Consensus 131 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~---~~~~l~~-~~~~~g~~~~a~~~~~~~~~~----~~~p~~~~~~ 198 (407)
+.......++.+|..++.++...-..|+ .. .|+.+-. .....|+++.|.++.+..... -..+....+.
T Consensus 422 aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~s 501 (894)
T COG2909 422 AWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALS 501 (894)
T ss_pred HHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhh
Confidence 4455667889999988887754321222 11 3444322 334578999999998887753 1223456677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHH--HHHHhcCC--HHHHHHHHHHHHh----cCC---CCHH
Q 015416 199 LLMDACFEVNRVDDGATYFRKMVDSGLRPNLA---VYNRLV--GKLVQVGM--LDEAKSFFDIMVK----KLK---MDDA 264 (407)
Q Consensus 199 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~--~~~~~~g~--~~~A~~~~~~~~~----~~~---~~~~ 264 (407)
.+..+..-.|++++|..+..+..+..-.-+.. .|..+. ..+..+|. +.+.+..|..... ..+ +-..
T Consensus 502 v~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~ 581 (894)
T COG2909 502 VLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVR 581 (894)
T ss_pred hhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHH
Confidence 77888888999999999888776532122222 333332 33556673 3444455554444 111 1223
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCcHHHH--HHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 265 SYKFMMKALSDG-GKLDEILEIVGGILDDGGIEFSEELQ--EFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 265 ~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
++..+..++.+. +...++..-+.-.... ...|-.... ..|+.++...|+.++|...+.++....
T Consensus 582 ~r~~ll~~~~r~~~~~~ear~~~~~~~~~-~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 582 IRAQLLRAWLRLDLAEAEARLGIEVGSVY-TPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred HHHHHHHHHHHHhhhhHHhhhcchhhhhc-ccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 445555555552 2222222222222221 112222222 267888899999999999999987543
No 309
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.01 E-value=0.66 Score=24.65 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 265 SYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 265 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
.+..++.++...|++++|++.|++++.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344445555555555555555555544
No 310
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.96 E-value=3.1 Score=39.03 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015416 158 DTLSFNNLIDQLCKNGMLAEAEELYGEMS 186 (407)
Q Consensus 158 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 186 (407)
+..-|..|..+....+++..|.+.|.+..
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 33445555555555555555555544443
No 311
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.84 E-value=9.6 Score=34.89 Aligned_cols=126 Identities=13% Similarity=0.068 Sum_probs=80.4
Q ss_pred HHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHh
Q 015416 17 MLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCN 96 (407)
Q Consensus 17 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (407)
|.-....||+-.|-+-+....++.++ ++.........+...|+++.+.+.+...... +.....+...+++...+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~---~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~---~~s~~~~~~~~~r~~~~ 369 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQ---DPVLIQLRSVIFSHLGYYEQAYQDISDVEKI---IGTTDSTLRCRLRSLHG 369 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCC---CchhhHHHHHHHHHhhhHHHHHHHhhchhhh---hcCCchHHHHHHHhhhc
Confidence 33344567776665555555554333 4444444445566778888888887766543 23345677788888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 015416 97 NGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYR 154 (407)
Q Consensus 97 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 154 (407)
.|+++.|...-.-|+...+. +..+.......-...|-++++.-.++++...+
T Consensus 370 l~r~~~a~s~a~~~l~~eie------~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 370 LARWREALSTAEMMLSNEIE------DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hhhHHHHHHHHHHHhccccC------ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 89999999888888776554 33333333334445567788888888877654
No 312
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=91.79 E-value=1.8 Score=29.82 Aligned_cols=31 Identities=16% Similarity=0.170 Sum_probs=12.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 225 LRPNLAVYNRLVGKLVQVGMLDEAKSFFDIM 255 (407)
Q Consensus 225 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 255 (407)
+.|++.+..+.+++|.+.+++..|.++|+.+
T Consensus 38 lVP~P~ii~aaLrAcRRvND~alAVR~lE~v 68 (103)
T cd00923 38 LVPEPKVIEAALRACRRVNDFALAVRILEAI 68 (103)
T ss_pred cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3334444444444444444444444444433
No 313
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.63 E-value=2.4 Score=33.94 Aligned_cols=73 Identities=11% Similarity=0.009 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCcHHHHHHHHHHHhhcCcHHHHH
Q 015416 246 DEAKSFFDIMVK-KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDG--GIEFSEELQEFVKGELSKEGREEEVV 319 (407)
Q Consensus 246 ~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~ 319 (407)
+.|.+.|-.+.. +.-.++.....++..|. ..+.++++.++.++++.. +-.++++++..|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 444444444444 22223333333333333 444555555555555442 11345555556666666666555553
No 314
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.59 E-value=1.5 Score=34.23 Aligned_cols=75 Identities=17% Similarity=0.311 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCC-----------HHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 015416 100 FDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGR-----------FKDAIEVFRKMGEYRCSPDTLSFNNLIDQ 168 (407)
Q Consensus 100 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 168 (407)
+++|+.-|++.+...|. ...++..+..+|...+. +++|...|++.... .|+...|+.-+..
T Consensus 51 iedAisK~eeAL~I~P~------~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 51 IEDAISKFEEALKINPN------KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEM 122 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCc------hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHH
Confidence 34555556666665543 33466666666655432 44555555555554 3777777666655
Q ss_pred HHHcCCHHHHHHHHHHHHhC
Q 015416 169 LCKNGMLAEAEELYGEMSDK 188 (407)
Q Consensus 169 ~~~~g~~~~a~~~~~~~~~~ 188 (407)
.. +|-++..++.+.
T Consensus 123 ~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 123 AA------KAPELHMEIHKQ 136 (186)
T ss_dssp HH------THHHHHHHHHHS
T ss_pred HH------hhHHHHHHHHHH
Confidence 42 344555555444
No 315
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.44 E-value=4.3 Score=37.08 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=76.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhh---CC--CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------CCCCCCH-
Q 015416 131 ADGYCGQGRFKDAIEVFRKMGE---YR--CSPD---TLSFNNLIDQLCKNGMLAEAEELYGEMSD-------KGVNPDE- 194 (407)
Q Consensus 131 ~~~~~~~g~~~~A~~~~~~~~~---~~--~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~p~~- 194 (407)
-..+.-.|++.+|.+++...-- .| +.|. -..||.|+..+.+.|.+.-+..+|.++++ .|++|..
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 4556778999999988765422 12 1121 22468888888888888888888877763 4555431
Q ss_pred ---------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 015416 195 ---------YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQ 241 (407)
Q Consensus 195 ---------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 241 (407)
.......-.|...|++-.|.+.|...... +..++..|..|..+|.-
T Consensus 327 ~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred eehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 12223556678899999999999988864 46688899999888864
No 316
>PRK09687 putative lyase; Provisional
Probab=91.25 E-value=9 Score=33.03 Aligned_cols=121 Identities=15% Similarity=0.006 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 015416 158 DTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVN-RVDDGATYFRKMVDSGLRPNLAVYNRLV 236 (407)
Q Consensus 158 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 236 (407)
+..+-...+.++.+.++ ..++..+-.+.+. ++...-...+.++...+ ....+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 33444444444444443 3344444444431 23333333333333321 12234444444442 23444444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 237 GKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 237 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
.++.+.|+ ..|...+-...+. ++ .....+.++...|.. +|+..+..+..
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~--~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKK--GT--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcC--Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 55555554 2333333333331 11 223444455555543 45555555544
No 317
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.15 E-value=6 Score=30.83 Aligned_cols=101 Identities=13% Similarity=0.131 Sum_probs=48.2
Q ss_pred HHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 31 RLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRM 110 (407)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 110 (407)
+.++.+.+. +++|+...+..++..+.+.|++..-.+++..-. -+|.......+ +...+.+..+.++--.|
T Consensus 15 EYirSl~~~--~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~V------i~DSk~lA~~L--Ls~~~~~~~~~Ql~lDM 84 (167)
T PF07035_consen 15 EYIRSLNQH--NIPVQHELYELLIDLLIRNGQFSQLHQLLQYHV------IPDSKPLACQL--LSLGNQYPPAYQLGLDM 84 (167)
T ss_pred HHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc------cCCcHHHHHHH--HHhHccChHHHHHHHHH
Confidence 344444444 666666677777777777776655554443222 22222222222 11122223333333333
Q ss_pred HhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 111 KNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKM 150 (407)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 150 (407)
.++- ...+..++..+...|++-+|+++.+..
T Consensus 85 LkRL---------~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 85 LKRL---------GTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HHHh---------hhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 3320 003455556666666666666666554
No 318
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.13 E-value=3.3 Score=32.47 Aligned_cols=68 Identities=12% Similarity=0.067 Sum_probs=37.7
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHH
Q 015416 252 FDIMVKKLKMDDASYKFMMKALSDGGK-----------LDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVK 320 (407)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 320 (407)
|+..+...|....++..++.+|...+. +++|...|+++... .|+.+.|..-.... .+|-+
T Consensus 58 ~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~---~P~ne~Y~ksLe~~------~kap~ 128 (186)
T PF06552_consen 58 FEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE---DPNNELYRKSLEMA------AKAPE 128 (186)
T ss_dssp HHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHH------HTHHH
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc---CCCcHHHHHHHHHH------HhhHH
Confidence 333333444455666666666654332 56677777777775 78888887665544 23555
Q ss_pred HHHHHHHh
Q 015416 321 LMEKKERE 328 (407)
Q Consensus 321 ~~~~~~~~ 328 (407)
+..++.+.
T Consensus 129 lh~e~~~~ 136 (186)
T PF06552_consen 129 LHMEIHKQ 136 (186)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHH
Confidence 55555544
No 319
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.21 E-value=0.93 Score=25.44 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 231 VYNRLVGKLVQVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 231 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 257 (407)
+++.|+..|...|++++|..++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 444455555555555555555554443
No 320
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.14 E-value=0.73 Score=24.24 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=13.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 267 KFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 267 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
..++.++.+.|++++|.+.|+++++.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34444555555555555555555544
No 321
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.09 E-value=0.88 Score=25.55 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 265 SYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 265 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
+++.+...|...|++++|..++++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 444555555555555555555555443
No 322
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.06 E-value=20 Score=34.95 Aligned_cols=311 Identities=11% Similarity=0.057 Sum_probs=167.7
Q ss_pred CcCCCCcCHHHHH-----HHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCH--HHHHHHHHHHH
Q 015416 2 FVKGFVADPVVYS-----YLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME--EEAMECYNEAV 74 (407)
Q Consensus 2 ~~~g~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~ 74 (407)
.+-|++.+..-|. .+|+-+...+.+..|+++-..+... ... ...+|......+.+..+. +.+++..++=+
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p--~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kl 500 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLP--ESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKL 500 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCc--ccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHh
Confidence 4556666665554 4566677778888888887766442 111 245666666666665322 23333333333
Q ss_pred hCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhC-
Q 015416 75 GENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY- 153 (407)
Q Consensus 75 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 153 (407)
+.. . ....+|..+.+-....|+.+.|..+++.=...+.... +-.+..-+...+.-....|+.+-...++-.+...
T Consensus 501 s~~--~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~-lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~ 576 (829)
T KOG2280|consen 501 SAK--L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVP-LLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL 576 (829)
T ss_pred ccc--C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhH-HHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 321 1 2356677788777889999999988764322221100 1113334455556666777777766666555432
Q ss_pred ----------CCCCCHHHHHHHHHH--------HHHcCCHHHHHHHH--HHHHhC-CCCCCHHHHHHHHHHHHhcCChH-
Q 015416 154 ----------RCSPDTLSFNNLIDQ--------LCKNGMLAEAEELY--GEMSDK-GVNPDEYTYGLLMDACFEVNRVD- 211 (407)
Q Consensus 154 ----------~~~~~~~~~~~l~~~--------~~~~g~~~~a~~~~--~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~- 211 (407)
..|.....|..+++- +.+.++-.++..-| +..... .+.+-..........|.+.....
T Consensus 577 ~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~ 656 (829)
T KOG2280|consen 577 NRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSF 656 (829)
T ss_pred HHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhh
Confidence 011111222222220 01111111111111 111000 01111222333344444433311
Q ss_pred ---------HHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 015416 212 ---------DGATYFRKMV-DSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDE 281 (407)
Q Consensus 212 ---------~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 281 (407)
+-+++.+.+. +.|..-..-+.+--+.-+...|+..+|.++-.+.. -|+-..|..-+.++...++|++
T Consensus 657 e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk---ipdKr~~wLk~~aLa~~~kwee 733 (829)
T KOG2280|consen 657 EAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK---IPDKRLWWLKLTALADIKKWEE 733 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC---CcchhhHHHHHHHHHhhhhHHH
Confidence 1122222222 12222233355666677778889888888877764 4788888889999999999998
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 282 ILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 282 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
-.++-+.... +--|.-.+.++.+.|+.++|.+++-++....
T Consensus 734 LekfAkskks-------PIGy~PFVe~c~~~~n~~EA~KYiprv~~l~ 774 (829)
T KOG2280|consen 734 LEKFAKSKKS-------PIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ 774 (829)
T ss_pred HHHHHhccCC-------CCCchhHHHHHHhcccHHHHhhhhhccCChH
Confidence 7776554332 3345556778889999999999988876544
No 323
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.99 E-value=6.9 Score=29.66 Aligned_cols=51 Identities=12% Similarity=0.079 Sum_probs=25.1
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 015416 97 NGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY 153 (407)
Q Consensus 97 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 153 (407)
.++.+++..+++.+.-..|... ..-..-...+...|+|.+|..+|+++...
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~------e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLK------ELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCcc------ccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 4555555555555554443321 12222233445555666666666655553
No 324
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.72 E-value=14 Score=32.89 Aligned_cols=65 Identities=11% Similarity=0.022 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 193 DEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRP---NLAVYNRLVGKLVQVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 193 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 257 (407)
...++..++..+.+.|.++.|...+.++...+... .+.+...-++.+-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45678889999999999999999999988643211 344555566777788999999998887776
No 325
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.64 E-value=13 Score=32.32 Aligned_cols=136 Identities=15% Similarity=0.149 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHh--c----CCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHh
Q 015416 63 EEEAMECYNEAVGENSSVKMSAVANNSVLDALCN--N----GKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCG 136 (407)
Q Consensus 63 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 136 (407)
+++.+.+++.+.+.+ +..+..++.+..-.... . .....|..+|+.|++..+-..+ ++-.++..++.. .
T Consensus 78 ~~~~~~~y~~L~~~g--Fk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs--~~D~~~a~lLA~--~ 151 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAG--FKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTS--PEDYPFAALLAM--T 151 (297)
T ss_pred HHHHHHHHHHHHHhc--cCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccC--ccchhHHHHHhc--c
Confidence 345577888888887 67676666554333332 1 2367788999999987654321 122334444333 3
Q ss_pred cCCH----HHHHHHHHHHhhCCCCCCHH--HHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015416 137 QGRF----KDAIEVFRKMGEYRCSPDTL--SFNNLIDQLCKNGM--LAEAEELYGEMSDKGVNPDEYTYGLLMDAC 204 (407)
Q Consensus 137 ~g~~----~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 204 (407)
..++ +.++.+|+.+...|+..+.. ....++..+..... ..++..+++.+.+.|+++....|..++-..
T Consensus 152 ~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 152 SEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 3333 45667777777766654433 23333332222222 346777888888888887777666554443
No 326
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=89.59 E-value=22 Score=34.79 Aligned_cols=272 Identities=13% Similarity=0.096 Sum_probs=148.6
Q ss_pred HHHHHHHHHHH-hcCChhhHHHHHHHHHHhhCCccCCcc-----hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCc-
Q 015416 11 VVYSYLMLGFV-RDGDSDGVFRLFEELKEKLGGVVSDGV-----VYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMS- 83 (407)
Q Consensus 11 ~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~- 83 (407)
.++--+...+. ...+++.|...+++.... ...++.. ....++..+.+.+... |....++.++.-.+.+.+
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l--~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILL--CERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 34555666665 578899999999988665 2222222 2234566666666665 999998877643221222
Q ss_pred -hhhHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHH--HhcCCHHHHHHHHHHHhhCC-----
Q 015416 84 -AVANNSV-LDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGY--CGQGRFKDAIEVFRKMGEYR----- 154 (407)
Q Consensus 84 -~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~----- 154 (407)
...+..+ +..+...+++..|.+.++.+........ .+...++..++.+. .+.+..+++.+.++.+....
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~--d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~ 214 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRG--DPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQL 214 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcC--CHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhccc
Confidence 2233333 2233334799999999998876542111 11333444444443 34565677777777663321
Q ss_pred ----CCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHh---C-CCC--------------------------CCHH---
Q 015416 155 ----CSPDTLSFNNLIDQLC--KNGMLAEAEELYGEMSD---K-GVN--------------------------PDEY--- 195 (407)
Q Consensus 155 ----~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~---~-~~~--------------------------p~~~--- 195 (407)
.+|...+|..++..++ ..|+++.+...++++.. . .-. |...
T Consensus 215 ~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl 294 (608)
T PF10345_consen 215 DPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWL 294 (608)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeec
Confidence 2345667777776654 56777777666555432 0 000 1000
Q ss_pred --------HHHHHHHHHHhcCChHHHHHHHHHHHH---C-----CCCCC--------HHHHHH---------HHHHHHhc
Q 015416 196 --------TYGLLMDACFEVNRVDDGATYFRKMVD---S-----GLRPN--------LAVYNR---------LVGKLVQV 242 (407)
Q Consensus 196 --------~~~~l~~~~~~~g~~~~a~~~~~~~~~---~-----~~~~~--------~~~~~~---------l~~~~~~~ 242 (407)
.|..-.-..+..+..+++.+++++..+ . ...+. ...|.. .+...+-.
T Consensus 295 ~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~ 374 (608)
T PF10345_consen 295 PKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIR 374 (608)
T ss_pred CHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHC
Confidence 111111223344555566666655442 1 11111 112211 12233457
Q ss_pred CCHHHHHHHHHHHHhc---CCC------CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015416 243 GMLDEAKSFFDIMVKK---LKM------DDASYKFMMKALSDGGKLDEILEIVG 287 (407)
Q Consensus 243 g~~~~A~~~~~~~~~~---~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~ 287 (407)
+++..|...+..+... .++ .+..+...+..+...|+.+.|...|.
T Consensus 375 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 375 GDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred cCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 8999999999988872 221 13334444455566899999999998
No 327
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.54 E-value=0.57 Score=24.67 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=11.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC
Q 015416 53 LMKGYFMKGMEEEAMECYNEAVGE 76 (407)
Q Consensus 53 l~~~~~~~g~~~~A~~~~~~~~~~ 76 (407)
++.++.+.|++++|...|++++..
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 444444445555555555544443
No 328
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.41 E-value=1 Score=23.96 Aligned_cols=27 Identities=37% Similarity=0.394 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015416 49 VYGSLMKGYFMKGMEEEAMECYNEAVG 75 (407)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 75 (407)
+|..+...|...|++++|...|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455555556666666666666655554
No 329
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.17 E-value=18 Score=33.25 Aligned_cols=93 Identities=9% Similarity=0.114 Sum_probs=53.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 015416 167 DQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLD 246 (407)
Q Consensus 167 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 246 (407)
..+...|+++.+.+.+...... +.....+...++....+.|+++.|...-.-|+...+. +..+.......-...|-++
T Consensus 331 ~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d 408 (831)
T PRK15180 331 VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFD 408 (831)
T ss_pred HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHH
Confidence 3445567777776666555432 2334455666666667777777777777666654443 3333333333344556667
Q ss_pred HHHHHHHHHHhcCCC
Q 015416 247 EAKSFFDIMVKKLKM 261 (407)
Q Consensus 247 ~A~~~~~~~~~~~~~ 261 (407)
++...|+++....+|
T Consensus 409 ~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 409 KSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHHHhccCCh
Confidence 777777766653333
No 330
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=89.05 E-value=5.4 Score=37.38 Aligned_cols=88 Identities=16% Similarity=0.056 Sum_probs=41.9
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 015416 95 CNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGM 174 (407)
Q Consensus 95 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 174 (407)
...|+...|.+++..+....+.. .-.....|.....+.|-...|..++.+.+... ...+.++-.+++++....+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~-----~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~ 691 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQ-----QDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKN 691 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhh-----hcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhh
Confidence 34455555555555544433221 11223344444455555555555555544433 2233344445555555555
Q ss_pred HHHHHHHHHHHHhC
Q 015416 175 LAEAEELYGEMSDK 188 (407)
Q Consensus 175 ~~~a~~~~~~~~~~ 188 (407)
.+.|++.|+++.+.
T Consensus 692 i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 692 ISGALEAFRQALKL 705 (886)
T ss_pred hHHHHHHHHHHHhc
Confidence 55555555555543
No 331
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.90 E-value=8.5 Score=29.19 Aligned_cols=51 Identities=18% Similarity=0.077 Sum_probs=24.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 242 VGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 242 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
.++.+++..++..+.--.|.....-..-+..+...|+|.+|+++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 455555555555554433333333333344445555555555555555543
No 332
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.83 E-value=5.5 Score=27.57 Aligned_cols=45 Identities=13% Similarity=0.153 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 015416 177 EAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMV 221 (407)
Q Consensus 177 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 221 (407)
++.+-++.+...++.|++....+.+.+|.+.+++..|.++++-+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444455555555555555555555555555555554
No 333
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.73 E-value=20 Score=33.28 Aligned_cols=165 Identities=14% Similarity=0.129 Sum_probs=126.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 015416 157 PDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLV 236 (407)
Q Consensus 157 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 236 (407)
.|....-+++..+..+-.+.-.+.+..+|+..| -+...|..++.+|... ..++-..+++++.+..+. |...-..|+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 455666778888888888888899999999854 4677899999999888 667888999999986543 455555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHh
Q 015416 237 GKLVQVGMLDEAKSFFDIMVKKLKMDD------ASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELS 310 (407)
Q Consensus 237 ~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 310 (407)
..|-+ ++.+.+..+|.++...+-|.. ..|..+... -..+.+....+...+....|...-...+..+..-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 66666 889999999999988555521 234433322 156788888888888888777777778888888899
Q ss_pred hcCcHHHHHHHHHHHHHh
Q 015416 311 KEGREEEVVKLMEKKERE 328 (407)
Q Consensus 311 ~~g~~~~A~~~~~~~~~~ 328 (407)
...++++|++++..+.+.
T Consensus 217 ~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 217 ENENWTEAIRILKHILEH 234 (711)
T ss_pred cccCHHHHHHHHHHHhhh
Confidence 999999999999988753
No 334
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.70 E-value=17 Score=32.54 Aligned_cols=161 Identities=12% Similarity=0.054 Sum_probs=85.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhC---------CCC
Q 015416 86 ANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY---------RCS 156 (407)
Q Consensus 86 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~ 156 (407)
.+.-+...|..+|+++.|++.|.+...- +.. .......|..+|..-.-.|+|.....+..+..+. .++
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs--~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDY-CTS--AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhh-hcc--hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence 4566778888889999999988885432 111 1113446666777777778888777777666543 122
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChHHHHH-----HHHHHHHCCC
Q 015416 157 PDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKG------VNPDEYTYGLLMDACFEVNRVDDGAT-----YFRKMVDSGL 225 (407)
Q Consensus 157 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~a~~-----~~~~~~~~~~ 225 (407)
+....+..+.... .+++..|.+.|-...... +.|...+....+.+....++-+--.. .|+...+
T Consensus 229 ~kl~C~agLa~L~--lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~fle--- 303 (466)
T KOG0686|consen 229 AKLKCAAGLANLL--LKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLE--- 303 (466)
T ss_pred cchHHHHHHHHHH--HHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHh---
Confidence 3333343333333 336666666654443211 23333333334444443333222222 2223322
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 226 RPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 226 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 257 (407)
..+..+..|...|. +++...+++++++..
T Consensus 304 -l~Pqlr~il~~fy~--sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 304 -LEPQLREILFKFYS--SKYASCLELLREIKP 332 (466)
T ss_pred -cChHHHHHHHHHhh--hhHHHHHHHHHHhcc
Confidence 22334444444433 477888888887776
No 335
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.69 E-value=1.4 Score=23.36 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 265 SYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 265 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
+|..+...|...|++++|...|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555555555555555555544
No 336
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=88.67 E-value=7.3 Score=31.99 Aligned_cols=24 Identities=8% Similarity=0.101 Sum_probs=12.8
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHH
Q 015416 304 FVKGELSKEGREEEVVKLMEKKER 327 (407)
Q Consensus 304 ~l~~~~~~~g~~~~A~~~~~~~~~ 327 (407)
.++....+.|+.++|.+.+.++..
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHc
Confidence 344455555555555555555543
No 337
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.59 E-value=4.5 Score=32.82 Aligned_cols=79 Identities=11% Similarity=0.174 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHH
Q 015416 49 VYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFN 128 (407)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (407)
+.+..+..+.+.+..++++...+.-++.+ |.+......++..++-.|+|++|..-++-.-...++. .+....|.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak---Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~---t~~a~lyr 76 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK---PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD---TVGASLYR 76 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC---CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc---chHHHHHH
Confidence 34455667778888888888888887776 5567777778888888899988888887766654331 12334555
Q ss_pred HHHHH
Q 015416 129 VMADG 133 (407)
Q Consensus 129 ~l~~~ 133 (407)
.++.+
T Consensus 77 ~lir~ 81 (273)
T COG4455 77 HLIRC 81 (273)
T ss_pred HHHHH
Confidence 55543
No 338
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.46 E-value=6.3 Score=37.09 Aligned_cols=133 Identities=17% Similarity=0.075 Sum_probs=92.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHH
Q 015416 12 VYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVL 91 (407)
Q Consensus 12 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (407)
.-+.+++.+.++|-.++|+++- +|+.- -.....+.|+++.|.++..+.. +..-|..|.
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s-----------~D~d~---rFelal~lgrl~iA~~la~e~~--------s~~Kw~~Lg 673 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS-----------TDPDQ---RFELALKLGRLDIAFDLAVEAN--------SEVKWRQLG 673 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC-----------CChhh---hhhhhhhcCcHHHHHHHHHhhc--------chHHHHHHH
Confidence 3466777777778777776543 23222 2234457788998888765543 456789999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 015416 92 DALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCK 171 (407)
Q Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 171 (407)
++..+.+++..|.++|.+... |..|+-.+...|+-+....+-....+.|. .| . -..+|..
T Consensus 674 ~~al~~~~l~lA~EC~~~a~d--------------~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~N-~----AF~~~~l 733 (794)
T KOG0276|consen 674 DAALSAGELPLASECFLRARD--------------LGSLLLLYTSSGNAEGLAVLASLAKKQGK-NN-L----AFLAYFL 733 (794)
T ss_pred HHHhhcccchhHHHHHHhhcc--------------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-cc-h----HHHHHHH
Confidence 999999999999999987653 55567777788887777777777777772 22 2 2335667
Q ss_pred cCCHHHHHHHHHHHH
Q 015416 172 NGMLAEAEELYGEMS 186 (407)
Q Consensus 172 ~g~~~~a~~~~~~~~ 186 (407)
.|+++++.+++..-.
T Consensus 734 ~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 734 SGDYEECLELLISTQ 748 (794)
T ss_pred cCCHHHHHHHHHhcC
Confidence 789998888876553
No 339
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.18 E-value=11 Score=29.47 Aligned_cols=29 Identities=14% Similarity=0.260 Sum_probs=13.6
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 015416 182 YGEMSDKGVNPDEYTYGLLMDACFEVNRV 210 (407)
Q Consensus 182 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 210 (407)
++.+.+.+++|+...+..++..+.+.|++
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 33334444444444555555555554443
No 340
>PRK10941 hypothetical protein; Provisional
Probab=88.07 E-value=8 Score=33.01 Aligned_cols=78 Identities=6% Similarity=-0.125 Sum_probs=48.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHH
Q 015416 51 GSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVM 130 (407)
Q Consensus 51 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l 130 (407)
+.+-.+|.+.++++.|+.+.+.++... |.+..-+.--+-.|.+.|.+..|..-++..++.-+... ++......
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~---P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp----~a~~ik~q 257 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD---PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP----ISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch----hHHHHHHH
Confidence 345566777777777777777777765 33455555556667777777777777777766654432 44444444
Q ss_pred HHHHH
Q 015416 131 ADGYC 135 (407)
Q Consensus 131 ~~~~~ 135 (407)
+....
T Consensus 258 l~~l~ 262 (269)
T PRK10941 258 IHSIE 262 (269)
T ss_pred HHHHh
Confidence 44433
No 341
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=87.86 E-value=6.3 Score=34.19 Aligned_cols=98 Identities=15% Similarity=0.129 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 015416 194 EYTYGLLMDACFEVNRVDDGATYFRKMVDSG-LRP--NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMM 270 (407)
Q Consensus 194 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 270 (407)
...|--=++-|.+..++..|...|.+-++.. -.| +...|+.-..+-...|++..|+.=....+...|.+...|..-.
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 3455566667777777777887777766432 123 3446666666666667777777777777765566666777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 015416 271 KALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 271 ~~~~~~g~~~~A~~~~~~~~~ 291 (407)
.++....++.+|....+....
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 777777777777777666544
No 342
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.86 E-value=14 Score=30.47 Aligned_cols=22 Identities=9% Similarity=0.190 Sum_probs=14.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 015416 236 VGKLVQVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 236 ~~~~~~~g~~~~A~~~~~~~~~ 257 (407)
...-...+++.+|+++|+++..
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334556777778888777766
No 343
>PRK11619 lytic murein transglycosylase; Provisional
Probab=87.82 E-value=29 Score=34.06 Aligned_cols=118 Identities=10% Similarity=0.150 Sum_probs=68.4
Q ss_pred cCChHHHHHHHHHHHHC-CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015416 207 VNRVDDGATYFRKMVDS-GLRPNL--AVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEIL 283 (407)
Q Consensus 207 ~g~~~~a~~~~~~~~~~-~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 283 (407)
..+.+.|...+...... ++.+.. .++..++......+...++...+....... .+......-++.....++++.+.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHHccCHHHHH
Confidence 34557777777766432 222221 133444433344332456666666544321 23444455555556788888888
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 015416 284 EIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKER 327 (407)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 327 (407)
..+..|-... .-......-+++++...|+.++|...|+++..
T Consensus 333 ~~i~~L~~~~--~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 333 TWLARLPMEA--KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHhcCHhh--ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888775532 33445555677777778888888888888753
No 344
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=87.47 E-value=2.1 Score=28.23 Aligned_cols=48 Identities=8% Similarity=0.050 Sum_probs=28.5
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHhhcCcHHHHHHHH
Q 015416 275 DGGKLDEILEIVGGILDDGGIEFSE-ELQEFVKGELSKEGREEEVVKLM 322 (407)
Q Consensus 275 ~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 322 (407)
...+.++|+..|..+++...-+++. .++.+++.+|...|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777776653222221 24556666777777777766653
No 345
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.34 E-value=0.94 Score=22.58 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=11.2
Q ss_pred HHHHHHHhhcCcHHHHHHHHH
Q 015416 303 EFVKGELSKEGREEEVVKLME 323 (407)
Q Consensus 303 ~~l~~~~~~~g~~~~A~~~~~ 323 (407)
..++.++...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344555555555555555543
No 346
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=86.98 E-value=58 Score=36.59 Aligned_cols=290 Identities=11% Similarity=0.048 Sum_probs=150.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHH----HHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHH
Q 015416 15 YLMLGFVRDGDSDGVFRLFEEL----KEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSV 90 (407)
Q Consensus 15 ~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (407)
.|..+-.+++.+.+|+..+++- .+. ......|..+...|+..+++|....+...-.. .|+ ...-
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~----~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~s---l~~q 1455 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK----ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPS---LYQQ 1455 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh----HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Ccc---HHHH
Confidence 5566777889999999999883 221 11223445555589999999998888765222 112 2334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH-HHHH
Q 015416 91 LDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNL-IDQL 169 (407)
Q Consensus 91 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~ 169 (407)
+......|++..|...|+++.+.++. ...+++.++......|.+...+-..+-..... .+....|+++ +.+-
T Consensus 1456 il~~e~~g~~~da~~Cye~~~q~~p~------~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaa 1528 (2382)
T KOG0890|consen 1456 ILEHEASGNWADAAACYERLIQKDPD------KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAA 1528 (2382)
T ss_pred HHHHHhhccHHHHHHHHHHhhcCCCc------cccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHH
Confidence 44567789999999999999887654 34466666666666677776666555444321 2222233322 1222
Q ss_pred HHcCCHHHHHHHHH--------------HHHhCCCCCCHHHH-HHH----------HHHHHhcCChHHHHHHHHHHH---
Q 015416 170 CKNGMLAEAEELYG--------------EMSDKGVNPDEYTY-GLL----------MDACFEVNRVDDGATYFRKMV--- 221 (407)
Q Consensus 170 ~~~g~~~~a~~~~~--------------~~~~~~~~p~~~~~-~~l----------~~~~~~~g~~~~a~~~~~~~~--- 221 (407)
=+.++++....... .+... .+-|...+ ..+ +.++...|.+..+.++.-++.
T Consensus 1529 W~l~qwD~~e~~l~~~n~e~w~~~~~g~~ll~~-~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~ 1607 (2382)
T KOG0890|consen 1529 WRLSQWDLLESYLSDRNIEYWSVESIGKLLLRN-KKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL 1607 (2382)
T ss_pred hhhcchhhhhhhhhcccccchhHHHHHHHHHhh-cccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH
Confidence 33444444333322 11111 01111111 110 111222222222222211110
Q ss_pred ------H--CCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHh--c-----CCCCHHHHHHHHHHHHhcCCHH
Q 015416 222 ------D--SGLRPNLA------VYNRLVGKLVQVGMLDEAKSFFDIMVK--K-----LKMDDASYKFMMKALSDGGKLD 280 (407)
Q Consensus 222 ------~--~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-----~~~~~~~~~~l~~~~~~~g~~~ 280 (407)
+ .+..++.. -|..-+..-....+..+-+--+++..- . ...-..+|....+.....|.++
T Consensus 1608 el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q 1687 (2382)
T KOG0890|consen 1608 ELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQ 1687 (2382)
T ss_pred HHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHH
Confidence 0 01111111 111111111111111221111222111 1 1223567888888888899999
Q ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh
Q 015416 281 EILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 281 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 328 (407)
.|...+-.+.+.. -+..+...+..+...|+...|+.++++....
T Consensus 1688 ~A~nall~A~e~r----~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1688 RAQNALLNAKESR----LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHhhhhcc----cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 9988877776641 4455666777888899999999998887743
No 347
>PRK10941 hypothetical protein; Provisional
Probab=86.94 E-value=14 Score=31.63 Aligned_cols=77 Identities=8% Similarity=-0.090 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Q 015416 232 YNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGE 308 (407)
Q Consensus 232 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 308 (407)
.+.|-.+|.+.++++.|+.+.+.+..-.|.++.-+.--+-.|.+.|.+..|..=++..++...-.|+.......+..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 34455566677777777777777777666666666666666777777777777777666654334444444443333
No 348
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.83 E-value=2.6 Score=24.35 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=15.0
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 305 VKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 305 l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
++.+|...|+.+.|.++++++...+
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4556666666666666666665433
No 349
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=86.74 E-value=3.6 Score=38.48 Aligned_cols=88 Identities=10% Similarity=0.027 Sum_probs=47.3
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015416 205 FEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILE 284 (407)
Q Consensus 205 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 284 (407)
...|+...|.+.+..+......-.......|.+...+.|..-.|-.++.+.+......+-++..+++++....+++.|++
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 34566666666665555321111122334455555555555566666665555334455556666666666666666666
Q ss_pred HHHHHHhc
Q 015416 285 IVGGILDD 292 (407)
Q Consensus 285 ~~~~~~~~ 292 (407)
.|+++++.
T Consensus 698 ~~~~a~~~ 705 (886)
T KOG4507|consen 698 AFRQALKL 705 (886)
T ss_pred HHHHHHhc
Confidence 66666654
No 350
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.56 E-value=3.6 Score=34.91 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 88 NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKM 150 (407)
Q Consensus 88 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 150 (407)
+.....|..+|.+.+|.++.++....++- +...+-.|+..+...|+--.+.+.++++
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL------~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPL------SEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChh------hhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34445555555555555555555555433 4445555555555555544444444443
No 351
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.34 E-value=25 Score=31.66 Aligned_cols=165 Identities=13% Similarity=0.130 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCCcccccc
Q 015416 49 VYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEH----NPPKRLAVNL 124 (407)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~ 124 (407)
.+.-+...|..+|+++.|++.|.++..--.........|..++..-...|+|.....+..+....- .....+.+..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 567788899999999999999998654321123345567777888888899988888777766541 0000111122
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHhhCC------CCC-CHHHHHHHHHHHHHcCCHHHHHH-----HHHHHHhCCCCC
Q 015416 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYR------CSP-DTLSFNNLIDQLCKNGMLAEAEE-----LYGEMSDKGVNP 192 (407)
Q Consensus 125 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~-~~~~~~~l~~~~~~~g~~~~a~~-----~~~~~~~~~~~p 192 (407)
..+..|... ..+++..|.+.|-...... +.| |..+|. .+.++..-++-+--.. .|+...+ .
T Consensus 232 ~C~agLa~L--~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYg-gLcALAtfdr~~Lk~~vi~n~~Fk~fle----l 304 (466)
T KOG0686|consen 232 KCAAGLANL--LLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYG-GLCALATFDRQDLKLNVIKNESFKLFLE----L 304 (466)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHhCCCCccCccceecchhhHHHH-hhHhhccCCHHHHHHHHHcchhhhhHHh----c
Confidence 233334333 3447777777665443211 123 333343 3334333333222111 2333333 2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015416 193 DEYTYGLLMDACFEVNRVDDGATYFRKMVD 222 (407)
Q Consensus 193 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 222 (407)
.+..+..+...| .+++...+++++++..
T Consensus 305 ~Pqlr~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 305 EPQLREILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred ChHHHHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 334444444444 4578888888888764
No 352
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=86.30 E-value=23 Score=31.30 Aligned_cols=117 Identities=8% Similarity=-0.033 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHH
Q 015416 212 DGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSD---GGKLDEILEIVGG 288 (407)
Q Consensus 212 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~ 288 (407)
.-+.+++++++.+ +.+......++..+.+..+.+...+-|+++....+.+...|...+..... .-.++....+|.+
T Consensus 49 ~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 49 RKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 3344555555442 23444555555555555555555555555555444455555555544433 2234444444444
Q ss_pred HHhcC-----CC----CCcH-------HHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 289 ILDDG-----GI----EFSE-------ELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 289 ~~~~~-----~~----~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
.+..- +. .+.. .++..+...+..+|..+.|..+++-+.+-+
T Consensus 128 ~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 128 CLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 33220 00 0001 122233445667788888888888777554
No 353
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=86.12 E-value=24 Score=31.24 Aligned_cols=63 Identities=5% Similarity=-0.060 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 015416 101 DEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLC 170 (407)
Q Consensus 101 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 170 (407)
+.-+.+++++++..+. +...+..++..+.+..+.++..+-+++++... +-+...|...+....
T Consensus 48 E~klsilerAL~~np~------~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q 110 (321)
T PF08424_consen 48 ERKLSILERALKHNPD------SERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQ 110 (321)
T ss_pred HHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHH
Confidence 3445556665555332 44455555666666666666666666665543 234455555554433
No 354
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.91 E-value=9.8 Score=26.68 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015416 177 EAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVD 222 (407)
Q Consensus 177 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 222 (407)
+..+-++.+....+.|++....+.+.+|.+.+++..|.++++-+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445555555555666666666777777777777777777766663
No 355
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=85.91 E-value=29 Score=32.15 Aligned_cols=100 Identities=13% Similarity=0.107 Sum_probs=73.7
Q ss_pred CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCCCcHHHH
Q 015416 226 RPNLAV-YNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSD--GGKLDEILEIVGGILDDGGIEFSEELQ 302 (407)
Q Consensus 226 ~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~ 302 (407)
.|+..+ -+.++..+.+.|-..+|.+.+..+....||+...|..+++.-.. +-+..-+..+|+.+...+| .++..|
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw 533 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLW 533 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHH
Confidence 444443 35567777788889999999999998878888888888875432 3347788899999999887 666666
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHH
Q 015416 303 EFVKGELSKEGREEEVVKLMEKKER 327 (407)
Q Consensus 303 ~~l~~~~~~~g~~~~A~~~~~~~~~ 327 (407)
.-....-...|+.+.+-.++.+..+
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHHH
Confidence 6655555678888887777766544
No 356
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=85.75 E-value=9.3 Score=26.27 Aligned_cols=59 Identities=12% Similarity=0.017 Sum_probs=32.8
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcH
Q 015416 257 KKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGRE 315 (407)
Q Consensus 257 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 315 (407)
...|.|......+...+...|++++|++.+-.++..+.-.-+......|+..+.-.|.-
T Consensus 16 a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 16 AANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 34556667777777777777777777777777766542222334445555555555543
No 357
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=85.59 E-value=2 Score=21.62 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015416 49 VYGSLMKGYFMKGMEEEAMECYNEAVG 75 (407)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 75 (407)
+|..++.++...|+++.|...|+..++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344555555555666666666555554
No 358
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.23 E-value=5.2 Score=34.41 Aligned_cols=104 Identities=12% Similarity=0.051 Sum_probs=51.4
Q ss_pred CccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc
Q 015416 42 GVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSS-VKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL 120 (407)
Q Consensus 42 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 120 (407)
|.+.+..+...++..-....+++.++.++-++.....- ..++. +-...++.+. .-+.++++.++..=+.-|+-|
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~--- 133 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFP--- 133 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhcccc---
Confidence 44445555555555555556666666665555432100 01111 1111222222 224456666666555666555
Q ss_pred ccccchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 015416 121 AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGE 152 (407)
Q Consensus 121 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 152 (407)
|-.+++.+++.+.+.+++.+|.++.-.|..
T Consensus 134 --dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 134 --DQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred --chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 555666666666666666666665555443
No 359
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=84.78 E-value=25 Score=30.41 Aligned_cols=150 Identities=13% Similarity=0.077 Sum_probs=82.2
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHH
Q 015416 59 MKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNN----GKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGY 134 (407)
Q Consensus 59 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 134 (407)
..+++..+...+......+ +......+...|... .+...|...|..+.+.+.. .....|..+|
T Consensus 53 ~~~~~~~a~~~~~~a~~~~-----~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~--------~a~~~lg~~~ 119 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG-----DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA--------EALFNLGLMY 119 (292)
T ss_pred ccccHHHHHHHHHHhhhcC-----ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH--------HHHHhHHHHH
Confidence 4566777777777776544 223444444444432 4567788888876666532 2555566666
Q ss_pred Hh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015416 135 CG----QGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNG-------MLAEAEELYGEMSDKGVNPDEYTYGLLMDA 203 (407)
Q Consensus 135 ~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 203 (407)
.. ..+..+|..+|++....|..+...+...+...|..-+ +...|...|.++...+ +......+...
T Consensus 120 ~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~ 196 (292)
T COG0790 120 ANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRM 196 (292)
T ss_pred hcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHH
Confidence 65 3477778888888777764332222333444443321 2225666666666554 33333334433
Q ss_pred HHh----cCChHHHHHHHHHHHHCC
Q 015416 204 CFE----VNRVDDGATYFRKMVDSG 224 (407)
Q Consensus 204 ~~~----~g~~~~a~~~~~~~~~~~ 224 (407)
|.. ..+..+|...|....+.|
T Consensus 197 y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 197 YEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred HHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 322 234566666666666654
No 360
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=84.69 E-value=24 Score=30.10 Aligned_cols=128 Identities=15% Similarity=0.127 Sum_probs=80.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCCHHHH
Q 015416 164 NLIDQLCKNGMLAEAEELYGEMSDKGVNPDE-------YTYGLLMDACFEVNRVDDGATYFRKMVD----SGLRPNLAVY 232 (407)
Q Consensus 164 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~ 232 (407)
.+.+-..+.+++++|+..|.+.+..|+..+. .+...+...|...|+...-.+......+ ..-+....+.
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 3556677889999999999999998877664 3556677888888887766655544332 2111223355
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 233 NRLVGKLVQ-VGMLDEAKSFFDIMVKKLKMD------DASYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 233 ~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
..|+..+.. ...++..+.+.....+-.... ...-..++..+.+.|.+.+|+.+...+..
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 566665544 345666666666666511111 12223456677778888888777665544
No 361
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=84.53 E-value=26 Score=30.34 Aligned_cols=165 Identities=18% Similarity=0.092 Sum_probs=109.0
Q ss_pred hcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHh-
Q 015416 22 RDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFM----KGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCN- 96 (407)
Q Consensus 22 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 96 (407)
..+++..+...+...... + +......+...|.. ..+..+|..+|..+...+ .......|...|..
T Consensus 53 ~~~~~~~a~~~~~~a~~~--~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g-----~~~a~~~lg~~~~~G 122 (292)
T COG0790 53 YPPDYAKALKSYEKAAEL--G---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG-----LAEALFNLGLMYANG 122 (292)
T ss_pred ccccHHHHHHHHHHhhhc--C---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc-----cHHHHHhHHHHHhcC
Confidence 446777888888877764 3 33455555555544 356889999999877766 34455556666665
Q ss_pred ---cCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcC-------CHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015416 97 ---NGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQG-------RFKDAIEVFRKMGEYRCSPDTLSFNNLI 166 (407)
Q Consensus 97 ---~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 166 (407)
..+..+|...|.++.+.|..+ ...+...+...|..-. +...|...|.+.-..+ +......+.
T Consensus 123 ~gv~~d~~~A~~~~~~Aa~~g~~~-----a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg 194 (292)
T COG0790 123 RGVPLDLVKALKYYEKAAKLGNVE-----AALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLG 194 (292)
T ss_pred CCcccCHHHHHHHHHHHHHcCChh-----HHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHH
Confidence 348999999999999988553 1122566666666542 2347888999888876 555555566
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 015416 167 DQLCK----NGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVN 208 (407)
Q Consensus 167 ~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 208 (407)
..|.. ..++.+|...|...-+.|. ......+. .+...|
T Consensus 195 ~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g 236 (292)
T COG0790 195 RMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcC
Confidence 55543 3478999999999998774 33333333 444444
No 362
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.07 E-value=0.47 Score=36.04 Aligned_cols=53 Identities=9% Similarity=0.136 Sum_probs=26.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 015416 166 IDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFR 218 (407)
Q Consensus 166 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 218 (407)
+..+.+.+.+.....+++.+...+...+....+.++..|++.+..+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 44444455555555555555544333445555555555555555455444444
No 363
>PRK09687 putative lyase; Provisional
Probab=83.72 E-value=28 Score=30.06 Aligned_cols=233 Identities=15% Similarity=0.053 Sum_probs=143.0
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCH----HHHHHHHHHHHhCCCCCCCc
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME----EEAMECYNEAVGENSSVKMS 83 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~ 83 (407)
+|.......+..+...|. +.+...+..+... +|+..-...+.++++.|+. +++...+..+... .++
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~-----~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~----D~d 104 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS-----KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE----DKS 104 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC-----CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc----CCC
Confidence 455555556666666665 3444444444442 3666666677777888764 4677777766443 334
Q ss_pred hhhHHHHHHHHHhcCC-----HHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 015416 84 AVANNSVLDALCNNGK-----FDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD 158 (407)
Q Consensus 84 ~~~~~~l~~~~~~~~~-----~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 158 (407)
..+....+.++...+. ...+...+....... +..+-...+.++.+.++ ..++..+-.+.+. ++
T Consensus 105 ~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~--------~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~ 172 (280)
T PRK09687 105 ACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDK--------STNVRFAVAFALSVIND-EAAIPLLINLLKD---PN 172 (280)
T ss_pred HHHHHHHHHHHhcccccccccchHHHHHHHHHhhCC--------CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CC
Confidence 5555555555555432 123344443333321 44466677778888877 5677777777763 55
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 015416 159 TLSFNNLIDQLCKNG-MLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVG 237 (407)
Q Consensus 159 ~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 237 (407)
..+-...+.++.+.+ ....+...+..+.. .++.......+.++.+.++ ..+...+-...+.+ + .....+.
T Consensus 173 ~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ 243 (280)
T PRK09687 173 GDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIE 243 (280)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHH
Confidence 566555666666543 24567777777774 4567777788888888888 45666666666543 2 2456778
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 015416 238 KLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKAL 273 (407)
Q Consensus 238 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 273 (407)
++...|.. +|...+..+....+ |..+-...+.+|
T Consensus 244 ALg~ig~~-~a~p~L~~l~~~~~-d~~v~~~a~~a~ 277 (280)
T PRK09687 244 AAGELGDK-TLLPVLDTLLYKFD-DNEIITKAIDKL 277 (280)
T ss_pred HHHhcCCH-hHHHHHHHHHhhCC-ChhHHHHHHHHH
Confidence 88888885 68888888887444 666655555544
No 364
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.41 E-value=0.91 Score=39.22 Aligned_cols=90 Identities=12% Similarity=0.056 Sum_probs=55.3
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcC
Q 015416 59 MKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQG 138 (407)
Q Consensus 59 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 138 (407)
..|.++.|++.|...+..+ ++....|..-..++.+.+++..|++-+...++..+. +..-|-.-..+....|
T Consensus 126 n~G~~~~ai~~~t~ai~ln---p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D------sa~~ykfrg~A~rllg 196 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN---PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD------SAKGYKFRGYAERLLG 196 (377)
T ss_pred cCcchhhhhcccccccccC---CchhhhcccccceeeeccCCchhhhhhhhhhccCcc------cccccchhhHHHHHhh
Confidence 4566777777777777665 455566666666667777777777777666665433 2233444444555566
Q ss_pred CHHHHHHHHHHHhhCCCCC
Q 015416 139 RFKDAIEVFRKMGEYRCSP 157 (407)
Q Consensus 139 ~~~~A~~~~~~~~~~~~~~ 157 (407)
+|++|...|....+.++.+
T Consensus 197 ~~e~aa~dl~~a~kld~dE 215 (377)
T KOG1308|consen 197 NWEEAAHDLALACKLDYDE 215 (377)
T ss_pred chHHHHHHHHHHHhccccH
Confidence 7777777777766665433
No 365
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=82.37 E-value=66 Score=33.44 Aligned_cols=89 Identities=19% Similarity=0.222 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHh
Q 015416 231 VYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELS 310 (407)
Q Consensus 231 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 310 (407)
.|.+.+..+...+++++|.-.|+..-+ ....+.+|...|+|.+|+.+..++... ..--..+-..|+.-+.
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk--------lekAl~a~~~~~dWr~~l~~a~ql~~~--~de~~~~a~~L~s~L~ 1010 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK--------LEKALKAYKECGDWREALSLAAQLSEG--KDELVILAEELVSRLV 1010 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc--------HHHHHHHHHHhccHHHHHHHHHhhcCC--HHHHHHHHHHHHHHHH
Confidence 445555556667788888777776543 344567888889999998888776432 1111112255666777
Q ss_pred hcCcHHHHHHHHHHHHHhh
Q 015416 311 KEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 311 ~~g~~~~A~~~~~~~~~~~ 329 (407)
..++.-+|-+++.+.....
T Consensus 1011 e~~kh~eAa~il~e~~sd~ 1029 (1265)
T KOG1920|consen 1011 EQRKHYEAAKILLEYLSDP 1029 (1265)
T ss_pred HcccchhHHHHHHHHhcCH
Confidence 7777777777777665433
No 366
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=82.30 E-value=58 Score=32.68 Aligned_cols=267 Identities=15% Similarity=0.083 Sum_probs=142.6
Q ss_pred HHHHHhcCChhhHHHHHHHHHHhhC-------------CccCCcchH----HHHHH--HHHHcCCHHHHHHHHHHHHhCC
Q 015416 17 MLGFVRDGDSDGVFRLFEELKEKLG-------------GVVSDGVVY----GSLMK--GYFMKGMEEEAMECYNEAVGEN 77 (407)
Q Consensus 17 i~~~~~~g~~~~A~~~~~~~~~~~~-------------~~~~~~~~~----~~l~~--~~~~~g~~~~A~~~~~~~~~~~ 77 (407)
|....+.||++.|.+++++...... .+| +.... -.+.. ......++.+|..++.++...-
T Consensus 367 I~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP-~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l 445 (894)
T COG2909 367 IDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALP-AELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFL 445 (894)
T ss_pred HHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCC-HHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHh
Confidence 4445567788888777776622200 111 11111 11222 2345688999999888876543
Q ss_pred CC--CCCchh---hHHHHH-HHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 015416 78 SS--VKMSAV---ANNSVL-DALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMG 151 (407)
Q Consensus 78 ~~--~~~~~~---~~~~l~-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 151 (407)
+. ..+... .|+.+- ......|+++.|.++.+.....-+. .........+..+..+..-.|++++|..+..+..
T Consensus 446 ~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~-~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~ 524 (894)
T COG2909 446 KAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE-AAYRSRIVALSVLGEAAHIRGELTQALALMQQAE 524 (894)
T ss_pred CcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc-ccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHH
Confidence 10 111111 233322 2345678899999999888765433 2222255677778888889999999998887765
Q ss_pred hCCCCCCHHH---HHHH--HHHHHHcCCHH--HHHHHHHHHHhCC--CC----CCHHHHHHHHHHHHhcCChHHHHHHHH
Q 015416 152 EYRCSPDTLS---FNNL--IDQLCKNGMLA--EAEELYGEMSDKG--VN----PDEYTYGLLMDACFEVNRVDDGATYFR 218 (407)
Q Consensus 152 ~~~~~~~~~~---~~~l--~~~~~~~g~~~--~a~~~~~~~~~~~--~~----p~~~~~~~l~~~~~~~g~~~~a~~~~~ 218 (407)
+..-.-+... |..+ ...+...|+.. +.+..|....... -+ +-..++..++.++.+ ++.+..-..
T Consensus 525 ~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear 601 (894)
T COG2909 525 QMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEAR 601 (894)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhh
Confidence 5321223332 2222 23455667333 3333333332210 11 122344455555544 333333222
Q ss_pred HH----HHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHh---cC--CCCHHHHHHHHH--HHHhcCCHHHHHHH
Q 015416 219 KM----VDSGLRPNLA--VYNRLVGKLVQVGMLDEAKSFFDIMVK---KL--KMDDASYKFMMK--ALSDGGKLDEILEI 285 (407)
Q Consensus 219 ~~----~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~--~~~~~~~~~l~~--~~~~~g~~~~A~~~ 285 (407)
.- ......|-.. .+..|+..+...|++++|...+.++.. .. .++..+-...+. .....|+...+...
T Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~ 681 (894)
T COG2909 602 LGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEW 681 (894)
T ss_pred hcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHH
Confidence 22 2222122222 334678888899999999999999887 11 222222223333 33457888888777
Q ss_pred HHH
Q 015416 286 VGG 288 (407)
Q Consensus 286 ~~~ 288 (407)
..+
T Consensus 682 l~~ 684 (894)
T COG2909 682 LLK 684 (894)
T ss_pred HHh
Confidence 766
No 367
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=82.28 E-value=20 Score=27.25 Aligned_cols=94 Identities=9% Similarity=0.073 Sum_probs=50.1
Q ss_pred CcCCCCcCHHH--HHHHHHHHHhcCChhhHHHHHHHHHHhhCC---ccCCcchHHHHHHHHHHcCC-HHHHHHHHHHHHh
Q 015416 2 FVKGFVADPVV--YSYLMLGFVRDGDSDGVFRLFEELKEKLGG---VVSDGVVYGSLMKGYFMKGM-EEEAMECYNEAVG 75 (407)
Q Consensus 2 ~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 75 (407)
++.+..++..+ .|+++.-....+++...+.+++.+..-.+. ...+..+|..++.+.....- --.+..+|..+.+
T Consensus 29 ~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~ 108 (145)
T PF13762_consen 29 QEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK 108 (145)
T ss_pred hhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 34455555544 366666666666666666666665332100 01244556666666654444 3345556666655
Q ss_pred CCCCCCCchhhHHHHHHHHHhc
Q 015416 76 ENSSVKMSAVANNSVLDALCNN 97 (407)
Q Consensus 76 ~~~~~~~~~~~~~~l~~~~~~~ 97 (407)
.+ .+++..-|..++.++.+.
T Consensus 109 ~~--~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 109 ND--IEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cC--CCCCHHHHHHHHHHHHcC
Confidence 44 455666666666655443
No 368
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=82.27 E-value=38 Score=30.53 Aligned_cols=104 Identities=13% Similarity=0.099 Sum_probs=65.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHC------CCCCCHHHHHHHHH
Q 015416 165 LIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACF-EVNRVDDGATYFRKMVDS------GLRPNLAVYNRLVG 237 (407)
Q Consensus 165 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~ 237 (407)
.+..+.+.|.+..|+++.+-+...+..-|+.....+|+.|+ +.++++--+++++..... ..-|+. .|+ ..-
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~-a~S-~aL 186 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNF-AFS-IAL 186 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccH-HHH-HHH
Confidence 35567788999999999999988765546777777777765 667777777777765541 012332 333 333
Q ss_pred HHHhcCCH---------------HHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 015416 238 KLVQVGML---------------DEAKSFFDIMVKKLKMDDASYKFMMKAL 273 (407)
Q Consensus 238 ~~~~~g~~---------------~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 273 (407)
++...++. +.|...+.+.... -+.+...|+..+
T Consensus 187 A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~---fP~vl~~Ll~~l 234 (360)
T PF04910_consen 187 AYFRLEKEESSQSSAQSGRSENSESADEALQKAILR---FPWVLVPLLDKL 234 (360)
T ss_pred HHHHhcCccccccccccccccchhHHHHHHHHHHHH---hHHHHHHHHHHh
Confidence 34444444 7788887777664 334445555544
No 369
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=81.97 E-value=4 Score=26.98 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=23.8
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 015416 59 MKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKL 106 (407)
Q Consensus 59 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 106 (407)
...+.++|+..|..+++..++.+.-..++..++.+|+..|++.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666655432111122344455555555655555443
No 370
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=81.93 E-value=20 Score=34.94 Aligned_cols=185 Identities=17% Similarity=0.235 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH----------HHHHHHHHH
Q 015416 101 DEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLS----------FNNLIDQLC 170 (407)
Q Consensus 101 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------~~~l~~~~~ 170 (407)
++-...+.+|..+--.|+.+ ...+...++-.|....+++..+++.+.+... ||..- |...++--.
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL--~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRN 254 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVL--HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRN 254 (1226)
T ss_pred HHHHHHHHHHHhhcCCcccc--CHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccC
Confidence 34455677888776666555 3345667888899999999999999998774 44321 222223233
Q ss_pred HcCCHHHHHHHHHHHHhC--CCCCCHHH-----HHHH--HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 015416 171 KNGMLAEAEELYGEMSDK--GVNPDEYT-----YGLL--MDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQ 241 (407)
Q Consensus 171 ~~g~~~~a~~~~~~~~~~--~~~p~~~~-----~~~l--~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 241 (407)
+-|+-++|+...-.+.+. .+.||... |.-+ -+.|...+..+.|.+.|++..+ +.|+...-..+...+..
T Consensus 255 r~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~a 332 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRA 332 (1226)
T ss_pred CCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHH
Confidence 457888888887777643 24555332 2211 1234456677889999999887 56665533333333333
Q ss_pred cC-CHHHHHHHHHHHHh-----cCCCC---HHHHH---HHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 242 VG-MLDEAKSFFDIMVK-----KLKMD---DASYK---FMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 242 ~g-~~~~A~~~~~~~~~-----~~~~~---~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
.| +++...++-.-... +.+-. ..-|. ..+.+-.-.+++.+|++.-+.|.+.
T Consensus 333 aG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 333 AGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred hhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhcc
Confidence 33 23322222111111 11111 11121 1223334567888888888888775
No 371
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=81.70 E-value=67 Score=33.06 Aligned_cols=98 Identities=11% Similarity=0.030 Sum_probs=64.9
Q ss_pred HHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHH----HHcC---CHHHHHHHHHHHHhCCCCCCCchhhHHH
Q 015416 17 MLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGY----FMKG---MEEEAMECYNEAVGENSSVKMSAVANNS 89 (407)
Q Consensus 17 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (407)
=+++.....++.|+..|+++....||..-.-.....++-.. ...| .+++|+.-|+.+...- --.--|..
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 557 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGV----GAPLEYLG 557 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCC----CCchHHHh
Confidence 36777888999999999999996555433333222222222 2234 4778888888876432 12233555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 015416 90 VLDALCNNGKFDEALKLFDRMKNEHNPPK 118 (407)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 118 (407)
-..+|.+.|++++-++.+.-..++.++.+
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHP 586 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCC
Confidence 55678899999999999998888766543
No 372
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=81.67 E-value=14 Score=25.33 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=14.9
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 015416 83 SAVANNSVLDALCNNGKFDEALKLFDRMKNEH 114 (407)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 114 (407)
|......+...+...|+++.|++.+-.+++..
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 44444445555555555555555555555443
No 373
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=81.66 E-value=49 Score=31.43 Aligned_cols=95 Identities=9% Similarity=0.058 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHH-HcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHH
Q 015416 14 SYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYF-MKGMEEEAMECYNEAVGENSSVKMSAVANNSVLD 92 (407)
Q Consensus 14 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (407)
......=.+.|..+.+..+|++-+. +++.+...|......+. ..|+.+.....|+.+......--.+...|...+.
T Consensus 83 ~kfA~~E~klg~~~~s~~Vfergv~---aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie 159 (577)
T KOG1258|consen 83 KKFADYEYKLGNAENSVKVFERGVQ---AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIE 159 (577)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHH
Confidence 3344444455666666666666665 45556666655444333 3355555556666555432111222334444444
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 015416 93 ALCNNGKFDEALKLFDRMK 111 (407)
Q Consensus 93 ~~~~~~~~~~A~~~~~~~~ 111 (407)
--..++++.....++++.+
T Consensus 160 ~en~qks~k~v~~iyeRil 178 (577)
T KOG1258|consen 160 FENGQKSWKRVANIYERIL 178 (577)
T ss_pred HHhccccHHHHHHHHHHHH
Confidence 4444445555554444444
No 374
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.22 E-value=0.55 Score=35.66 Aligned_cols=54 Identities=9% Similarity=0.066 Sum_probs=28.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 015416 130 MADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183 (407)
Q Consensus 130 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 183 (407)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344555555555555666666554433445555666666666655555555544
No 375
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.65 E-value=3.4 Score=23.89 Aligned_cols=25 Identities=16% Similarity=0.375 Sum_probs=17.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 268 FMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 268 ~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
.+..+|...|+.+.|.++++++...
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHc
Confidence 4566777777777777777777653
No 376
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.61 E-value=3 Score=36.25 Aligned_cols=86 Identities=14% Similarity=0.100 Sum_probs=46.9
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015416 206 EVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEI 285 (407)
Q Consensus 206 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 285 (407)
..|.++.|++.|...++.. ++....|..-..++.+.+++..|++-+.......+....-|-.-..+....|+|++|...
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 3455666666666655532 333344555555556666666666666555553333344444444445556666666666
Q ss_pred HHHHHhc
Q 015416 286 VGGILDD 292 (407)
Q Consensus 286 ~~~~~~~ 292 (407)
|..+.+.
T Consensus 205 l~~a~kl 211 (377)
T KOG1308|consen 205 LALACKL 211 (377)
T ss_pred HHHHHhc
Confidence 6666654
No 377
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=80.22 E-value=16 Score=25.21 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=7.8
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 015416 273 LSDGGKLDEILEIVGGIL 290 (407)
Q Consensus 273 ~~~~g~~~~A~~~~~~~~ 290 (407)
....|++++|...+++.+
T Consensus 51 ~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 333444444444444443
No 378
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=80.15 E-value=32 Score=28.30 Aligned_cols=67 Identities=13% Similarity=0.141 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCCHH-------HHHHHHHHHHh--cCCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 015416 231 VYNRLVGKLVQVGMLD-------EAKSFFDIMVK--KLKM---D-DASYKFMMKALSDGGKLDEILEIVGGILDDGGIEF 297 (407)
Q Consensus 231 ~~~~l~~~~~~~g~~~-------~A~~~~~~~~~--~~~~---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 297 (407)
.+..+...|...|+.+ .|.+.|.+... ..+. + ......++....+.|+.++|.+.|.+++...+...
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 4555666677777744 44555555544 1111 2 33455566777889999999999999998754333
No 379
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.00 E-value=4.1 Score=20.33 Aligned_cols=28 Identities=25% Similarity=0.371 Sum_probs=19.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 86 ANNSVLDALCNNGKFDEALKLFDRMKNE 113 (407)
Q Consensus 86 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 113 (407)
+|..+..++...++++.|...|+..++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4556666677777777777777766654
No 380
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=79.95 E-value=52 Score=30.65 Aligned_cols=243 Identities=13% Similarity=0.139 Sum_probs=135.9
Q ss_pred HHHHHHHHHhhCCccCCcchHHHHHHHHHHcC------CHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHH-
Q 015416 30 FRLFEELKEKLGGVVSDGVVYGSLMKGYFMKG------MEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDE- 102 (407)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~- 102 (407)
..+|+..... .|+...|+..|..|...- ....-..+|+.....+.-.+.....|..+..++.......+
T Consensus 302 ~~v~ee~v~~----l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 302 CAVYEEAVKT----LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHHHHHHH----hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 3555555542 345666666666665431 34445556666555443223344455555555555544333
Q ss_pred HHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcC-CHHHH-HHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-HHHH-
Q 015416 103 ALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQG-RFKDA-IEVFRKMGEYRCSPDTLSFNNLIDQLCKNGM-LAEA- 178 (407)
Q Consensus 103 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a- 178 (407)
|..+..+.... +...|..-+....+.. +++-- ...|......-..+....|+... .++ ....
T Consensus 378 a~~l~~e~f~~---------s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~ 443 (568)
T KOG2396|consen 378 AVKLTTELFRD---------SGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDT 443 (568)
T ss_pred HHHhhHHHhcc---------hHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHH
Confidence 33333233322 3344444444443221 22111 12223333321223334444433 122 1111
Q ss_pred H-HHHHHHHhCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHH
Q 015416 179 E-ELYGEMSDKGVNPDEYT-YGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQ--VGMLDEAKSFFDI 254 (407)
Q Consensus 179 ~-~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~ 254 (407)
+ .++..+... ..|+..+ -+.++..+...|-..+|..+|..+... .+|+...|..+++.-.. .-+...+..+++.
T Consensus 444 ~~~Ii~a~~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~ 521 (568)
T KOG2396|consen 444 LDLIISALLSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDR 521 (568)
T ss_pred HHHHHHHHHHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHH
Confidence 1 122233332 2444333 456777788899999999999999985 36677888888876432 2347888999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 255 MVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 255 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
+...+..++..|...+.--...|..+.+-.++.++.+.
T Consensus 522 a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 522 ALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred HHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHHHh
Confidence 99855588888888888777899999888888887764
No 381
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=79.87 E-value=64 Score=31.63 Aligned_cols=87 Identities=13% Similarity=0.165 Sum_probs=34.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh---
Q 015416 166 IDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSG-LRPNLAVYNRLVGKLVQ--- 241 (407)
Q Consensus 166 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--- 241 (407)
..++.-.|+++.|++++-. ..+...+..++...+..| |-+......-..+.... -.|...-+..|+..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~---gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYY---GLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT---T------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHc---CCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3445557888888887766 111233344443333332 22111111112222110 01112456667777765
Q ss_pred cCCHHHHHHHHHHHHh
Q 015416 242 VGMLDEAKSFFDIMVK 257 (407)
Q Consensus 242 ~g~~~~A~~~~~~~~~ 257 (407)
..+..+|.++|--+..
T Consensus 340 ~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 340 ITDPREALQYLYLICL 355 (613)
T ss_dssp TT-HHHHHHHHHGGGG
T ss_pred ccCHHHHHHHHHHHHH
Confidence 4567777777776665
No 382
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=79.79 E-value=38 Score=29.05 Aligned_cols=60 Identities=5% Similarity=0.070 Sum_probs=32.3
Q ss_pred ccchHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 015416 123 NLGSFNVMADGYCGQGRFKDAIEVFRKMGEY-RCSPDTLSFNNLIDQLCKNGMLAEAEELY 182 (407)
Q Consensus 123 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 182 (407)
+..+...++..++..++|.+-.++++..... +...|...|..++......|+..-...+.
T Consensus 201 ~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 201 TRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred ChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 3345555566666666666666665555443 33345555666666666666654444333
No 383
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.23 E-value=38 Score=28.11 Aligned_cols=19 Identities=5% Similarity=0.232 Sum_probs=10.3
Q ss_pred HhcCChHHHHHHHHHHHHC
Q 015416 205 FEVNRVDDGATYFRKMVDS 223 (407)
Q Consensus 205 ~~~g~~~~a~~~~~~~~~~ 223 (407)
...+++.+|+.+|+++...
T Consensus 165 a~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555566666555543
No 384
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=77.71 E-value=15 Score=33.27 Aligned_cols=26 Identities=12% Similarity=0.099 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015416 231 VYNRLVGKLVQVGMLDEAKSFFDIMV 256 (407)
Q Consensus 231 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 256 (407)
++.-++-+|.-.+++.+|.+.|..++
T Consensus 166 ~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 166 TYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555444
No 385
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=76.97 E-value=16 Score=25.28 Aligned_cols=56 Identities=20% Similarity=0.138 Sum_probs=29.9
Q ss_pred HHhcCChhhHHHHHHHHHHhhC-CccCC-----cchHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015416 20 FVRDGDSDGVFRLFEELKEKLG-GVVSD-----GVVYGSLMKGYFMKGMEEEAMECYNEAVG 75 (407)
Q Consensus 20 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 75 (407)
..+.||+..|.+.+.+..+... ...+. ....-.+...+...|++++|+..+++++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567888888666666554311 11111 11222344455566777777777766654
No 386
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.71 E-value=92 Score=31.71 Aligned_cols=118 Identities=20% Similarity=0.196 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCCchhhHHHHHHHHHhcCCH--HHHHHHHHHHHhcCCCCCccccccc
Q 015416 49 VYGSLMKGYFMKGMEEEAMECYNEAVGENS-SVKMSAVANNSVLDALCNNGKF--DEALKLFDRMKNEHNPPKRLAVNLG 125 (407)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (407)
-|..|+..|...|+.++|++++.+...... .-..-...+-.++.-+.+.+.. +-..++-+......+.. ...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~-----gi~ 580 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEA-----GIQ 580 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchh-----hee
Confidence 578899999999999999999998876321 0011122233355555555544 66666666665544332 111
Q ss_pred hHH------------HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 015416 126 SFN------------VMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCK 171 (407)
Q Consensus 126 ~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 171 (407)
++. ..+-.|......+-+..+++.+....-.++....+.++..|+.
T Consensus 581 Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 581 IFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred eeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 111 1233455666677777778777665544566666666666654
No 387
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=76.18 E-value=49 Score=28.29 Aligned_cols=90 Identities=10% Similarity=0.027 Sum_probs=55.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 015416 128 NVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFE- 206 (407)
Q Consensus 128 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 206 (407)
..=|.+++..++|.+++.+.-+.-+.--.-.......-|-.|.+.+.+..+.++-..-+...-.-+...|..++..|..
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 3446778888888888776555433211122344455566788888888888777776653222234446666666543
Q ss_pred ----cCChHHHHHHH
Q 015416 207 ----VNRVDDGATYF 217 (407)
Q Consensus 207 ----~g~~~~a~~~~ 217 (407)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 58888887776
No 388
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=76.06 E-value=10 Score=34.65 Aligned_cols=106 Identities=15% Similarity=0.121 Sum_probs=75.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHH
Q 015416 53 LMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMAD 132 (407)
Q Consensus 53 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (407)
-+.-+...+.++.|+.++.++++.+ +-.+..|..=..++.+.+++..|+.=+..+++..+. ....|..-..
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ld---pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~------~~K~Y~rrg~ 80 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELD---PNCAIYFANRALAHLKVESFGGALHDALKAIELDPT------YIKAYVRRGT 80 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcC---CcceeeechhhhhheeechhhhHHHHHHhhhhcCch------hhheeeeccH
Confidence 4556667788999999999998865 335666666678888899999999888888887643 3334555556
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 015416 133 GYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQL 169 (407)
Q Consensus 133 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 169 (407)
++.+.+.+.+|+..|+..... .|+..-...++.-|
T Consensus 81 a~m~l~~~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 81 AVMALGEFKKALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred HHHhHHHHHHHHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 677777788888888877764 46666555554443
No 389
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=76.03 E-value=21 Score=28.76 Aligned_cols=35 Identities=17% Similarity=0.076 Sum_probs=23.4
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 258 KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 258 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
...|++.+|..++.++...|+.++|.+...++...
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35566666666677777777777776666666664
No 390
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=74.85 E-value=54 Score=28.13 Aligned_cols=165 Identities=10% Similarity=0.092 Sum_probs=104.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHh---CCCCC-CHHH
Q 015416 128 NVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTL-------SFNNLIDQLCKNGMLAEAEELYGEMSD---KGVNP-DEYT 196 (407)
Q Consensus 128 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~p-~~~~ 196 (407)
.-+.+-..+.+++++|+..+.+++..|+..+.. +...+...|...|++...-+......+ .-.+| ....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 346677788999999999999999998776654 455678889999988877666654332 11122 2344
Q ss_pred HHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCHHH
Q 015416 197 YGLLMDACFEV-NRVDDGATYFRKMVDSGLRPNL-----AVYNRLVGKLVQVGMLDEAKSFFDIMVK-----KLKMDDAS 265 (407)
Q Consensus 197 ~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 265 (407)
...++.-+... ..++.-+.+.....+...+-.. ..-.-++..+.+.|.+.+|+.+...+.. ..+++..+
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 55555555433 4467777777776653222111 1224567888899999999998887765 34444433
Q ss_pred H-HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 266 Y-KFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 266 ~-~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
. ..=-.+|....++.++..-+..++..
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~ 194 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTL 194 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHH
Confidence 2 22234555555666666555555544
No 391
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=74.42 E-value=9.8 Score=34.81 Aligned_cols=94 Identities=14% Similarity=0.016 Sum_probs=73.4
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHH
Q 015416 16 LMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALC 95 (407)
Q Consensus 16 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (407)
-+.-+...++++.|+.+|.+.++. .+..+..|..-..++.+.+++..|+.=+.++++.+ +.....|..=..++.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~l---dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d---P~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIEL---DPNCAIYFANRALAHLKVESFGGALHDALKAIELD---PTYIKAYVRRGTAVM 83 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhc---CCcceeeechhhhhheeechhhhHHHHHHhhhhcC---chhhheeeeccHHHH
Confidence 345567788999999999999985 23356666667799999999999999999999876 334555666667777
Q ss_pred hcCCHHHHHHHHHHHHhcCC
Q 015416 96 NNGKFDEALKLFDRMKNEHN 115 (407)
Q Consensus 96 ~~~~~~~A~~~~~~~~~~~~ 115 (407)
+.+.+.+|...|+......+
T Consensus 84 ~l~~~~~A~~~l~~~~~l~P 103 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKLAP 103 (476)
T ss_pred hHHHHHHHHHHHHHhhhcCc
Confidence 88888899998888876543
No 392
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=74.02 E-value=30 Score=33.30 Aligned_cols=93 Identities=15% Similarity=0.076 Sum_probs=61.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHH------HHHHHHHHHHhCCCCCCCchhhHH
Q 015416 15 YLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEE------EAMECYNEAVGENSSVKMSAVANN 88 (407)
Q Consensus 15 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
+|+.+|...|++..+.++++.+.....|.+.=...+|..++-..+.|.++ .|.+.++...- .-|..||.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~l-----n~d~~t~a 107 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARL-----NGDSLTYA 107 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhc-----CCcchHHH
Confidence 78999999999999999999998864444444567888888888888764 45555555542 23566776
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 89 SVLDALCNNGKFDEALKLFDRMKN 112 (407)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~~~~ 112 (407)
.++.+-..--+-....-++.+++.
T Consensus 108 ll~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 108 LLCQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHHHhhcChHhHHhccHHHHHHHH
Confidence 666554433222333334444443
No 393
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=73.63 E-value=22 Score=29.97 Aligned_cols=58 Identities=9% Similarity=0.125 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 232 YNRLVGKLVQVGMLDEAKSFFDIMVKK------LKMDDASYKFMMKALSDGGKLDEILEIVGGI 289 (407)
Q Consensus 232 ~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 289 (407)
...++..|...|++++|.++|+.+... ..+...+...+..++.+.|+.+..+.+.-++
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334556666667777777766666441 1122334444555555566665555544333
No 394
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=73.61 E-value=57 Score=27.89 Aligned_cols=88 Identities=17% Similarity=0.155 Sum_probs=52.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 015416 90 VLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQL 169 (407)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 169 (407)
=|.+++..++|.++....-+.-+. |..+ .+.+...-|-.|.+.|.+..+.++-...+...-..+...|..++..|
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~---pEkl--PpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELy 163 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQV---PEKL--PPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELY 163 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcC---cccC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHH
Confidence 356777777777766655443322 2222 23345555667778888877777777766532223334466666555
Q ss_pred HH-----cCCHHHHHHHH
Q 015416 170 CK-----NGMLAEAEELY 182 (407)
Q Consensus 170 ~~-----~g~~~~a~~~~ 182 (407)
.. .|.+++|+++.
T Consensus 164 Ll~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 164 LLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHhccccHHHHHHHH
Confidence 44 57788887766
No 395
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=73.14 E-value=26 Score=31.84 Aligned_cols=61 Identities=11% Similarity=0.100 Sum_probs=44.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEY------RCS-PDTLSFNNLIDQLCKNGMLAEAEELYGEMS 186 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 186 (407)
+...|++.++-.||+..|+++++.+.-. .++ -.+.++-.++-+|...+++.+|.+.|...+
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888999999999998876321 111 223466778888888999999999888764
No 396
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=72.30 E-value=77 Score=28.83 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=23.6
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHh
Q 015416 206 EVNRVDDGATYFRKMVDSGLRPNLA--VYNRLVGKLV--QVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 206 ~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~~~ 257 (407)
+.+++..|.++++.+... ++++.. .+..+..+|. ..-++.+|.+.++....
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 445555555555555543 333322 3333333333 23445555555555544
No 397
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.25 E-value=1.1e+02 Score=30.43 Aligned_cols=171 Identities=13% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHH
Q 015416 54 MKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADG 133 (407)
Q Consensus 54 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 133 (407)
++.+.+.+.+++|+...+.....-+.+ .-...+..++..+...|++++|-...-.|... +..-|...+..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~-~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn---------~~~eWe~~V~~ 432 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERF-VIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN---------NAAEWELWVFK 432 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCcccc-chHHHHHHHHHHHHhcchHHHHHhhhHHHhcc---------hHHHHHHHHHH
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 015416 134 YCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDG 213 (407)
Q Consensus 134 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 213 (407)
+...++......++=.-.. ..+...|..++..+.. ..-..+++...+ -+++...-..++++-...-+-...
T Consensus 433 f~e~~~l~~Ia~~lPt~~~---rL~p~vYemvLve~L~----~~~~~F~e~i~~--Wp~~Lys~l~iisa~~~q~~q~Se 503 (846)
T KOG2066|consen 433 FAELDQLTDIAPYLPTGPP---RLKPLVYEMVLVEFLA----SDVKGFLELIKE--WPGHLYSVLTIISATEPQIKQNSE 503 (846)
T ss_pred hccccccchhhccCCCCCc---ccCchHHHHHHHHHHH----HHHHHHHHHHHh--CChhhhhhhHHHhhcchHHHhhcc
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 214 ATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 257 (407)
...+.+. |+..|...++++.|+.++-.+..
T Consensus 504 ~~~L~e~--------------La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 504 STALLEV--------------LAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred chhHHHH--------------HHHHHHHccChHHHHHHHHhccC
No 398
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=70.33 E-value=88 Score=32.97 Aligned_cols=158 Identities=13% Similarity=0.011 Sum_probs=99.8
Q ss_pred HHHHHHcCCHHHHHH------HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH---H--CCCC--CCHHHH
Q 015416 166 IDQLCKNGMLAEAEE------LYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMV---D--SGLR--PNLAVY 232 (407)
Q Consensus 166 ~~~~~~~g~~~~a~~------~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~--~~~~--~~~~~~ 232 (407)
.......|.+.++.+ ++......-.++....|..+...+.+.|+.++|...-.... + .|.. -+...|
T Consensus 939 gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y 1018 (1236)
T KOG1839|consen 939 GQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAY 1018 (1236)
T ss_pred hhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHh
Confidence 334445566666665 55533322123346678888888899999999888765543 1 1222 234467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh--------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CC--CCc
Q 015416 233 NRLVGKLVQVGMLDEAKSFFDIMVK--------KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDG----GI--EFS 298 (407)
Q Consensus 233 ~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~--~~~ 298 (407)
..+...+...++...|...+.+... ..||...++..+-..+...++++.|+++.+.+.... |. -..
T Consensus 1019 ~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~ 1098 (1236)
T KOG1839|consen 1019 GNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELET 1098 (1236)
T ss_pred hHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhh
Confidence 7777777778888888888888776 244455566666666667788999999998887642 11 223
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHH
Q 015416 299 EELQEFVKGELSKEGREEEVVKLME 323 (407)
Q Consensus 299 ~~~~~~l~~~~~~~g~~~~A~~~~~ 323 (407)
...+..+.+.+...+++..|....+
T Consensus 1099 ~~~~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1099 ALSYHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHh
Confidence 3456666666666666666554433
No 399
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=70.10 E-value=19 Score=22.64 Aligned_cols=46 Identities=15% Similarity=0.171 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh
Q 015416 280 DEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 280 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 328 (407)
+...++++.+... .-+....-.++.+|...|++++|.++++++...
T Consensus 7 ~~~~~~~~~lR~~---RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 7 EELEELIDSLRAQ---RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3344444444332 233444455667777777777777777776543
No 400
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=70.09 E-value=2e+02 Score=32.78 Aligned_cols=123 Identities=9% Similarity=0.029 Sum_probs=83.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHH
Q 015416 52 SLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMA 131 (407)
Q Consensus 52 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 131 (407)
.+..+-.+++.+.+|.-+++.-......-.....-+..+...|...+++|....+....... | .....+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~---~--------sl~~qi 1456 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD---P--------SLYQQI 1456 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC---c--------cHHHHH
Confidence 55667778899999999999842111000112233444555999999999988887752221 1 344566
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015416 132 DGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMS 186 (407)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 186 (407)
......|++..|...|+.+.+.+ ++...+++-++......|.+...+...+-..
T Consensus 1457 l~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~ 1510 (2382)
T KOG0890|consen 1457 LEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLI 1510 (2382)
T ss_pred HHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchh
Confidence 67788999999999999999976 4446677777776666777777666554443
No 401
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=69.98 E-value=41 Score=24.76 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=29.1
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 015416 214 ATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDA 264 (407)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 264 (407)
.+-+..+...++.|++.+...-++++.+.+++..|.++|+-+.....+...
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~ 119 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQ 119 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHH
Confidence 344444455555666666666666666666666666666666554444333
No 402
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=69.41 E-value=67 Score=26.94 Aligned_cols=61 Identities=15% Similarity=-0.056 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh
Q 015416 266 YKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 266 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 328 (407)
+..+.+++...|++-++++...+++..+ +.+...|..-+.+....=+..+|.+-|.++.+.
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~--~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHH--PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 3444455555666666666666666542 444445555555555555555555555555543
No 403
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=69.28 E-value=43 Score=24.68 Aligned_cols=58 Identities=10% Similarity=0.125 Sum_probs=41.3
Q ss_pred HHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Q 015416 247 EAKSFFDIMVK-KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVK 306 (407)
Q Consensus 247 ~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 306 (407)
+..+-+..+.. ..-|++......+++|.+.+++..|+++|+-+..+. .+....|..++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~--g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC--GAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc--ccHHHHHHHHH
Confidence 34444455554 677888888999999999999999999998887763 44444565554
No 404
>PRK11619 lytic murein transglycosylase; Provisional
Probab=68.98 E-value=1.2e+02 Score=29.86 Aligned_cols=116 Identities=13% Similarity=0.127 Sum_probs=54.6
Q ss_pred CCHHHHHHHHHHHHhC-CCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015416 173 GMLAEAEELYGEMSDK-GVNPDE--YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAK 249 (407)
Q Consensus 173 g~~~~a~~~~~~~~~~-~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 249 (407)
.+.+.|..++...... +..+.. ..+..+.......+...++...+....... .+......-+..-...++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHH
Confidence 4456777777665332 122111 122222222222222344444444433221 12333333344444666666666
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015416 250 SFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGIL 290 (407)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 290 (407)
..+..|.........-..-+++++...|+.++|...|+.+.
T Consensus 333 ~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 333 TWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 66666554333344444555666555666666666666653
No 405
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=68.80 E-value=29 Score=27.89 Aligned_cols=47 Identities=15% Similarity=0.103 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhH
Q 015416 281 EILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKA 330 (407)
Q Consensus 281 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 330 (407)
..++..++... ..|++..+..++.++...|+.++|...++++..--+
T Consensus 129 ~~~~~a~~~l~---~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 129 AYIEWAERLLR---RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHH---hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33444445554 479999999999999999999999999998876443
No 406
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=68.77 E-value=29 Score=29.26 Aligned_cols=61 Identities=16% Similarity=0.093 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhh----CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGE----YR-CSPDTLSFNNLIDQLCKNGMLAEAEELYGEMS 186 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 186 (407)
....+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++...|+.+..+.+--++.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 444566667777777777777666532 22 12333445556666667777776666554443
No 407
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=68.74 E-value=14 Score=18.82 Aligned_cols=12 Identities=17% Similarity=0.232 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHh
Q 015416 280 DEILEIVGGILD 291 (407)
Q Consensus 280 ~~A~~~~~~~~~ 291 (407)
+.+..+|++++.
T Consensus 4 ~~~r~i~e~~l~ 15 (33)
T smart00386 4 ERARKIYERALE 15 (33)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 408
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=68.45 E-value=45 Score=24.63 Aligned_cols=80 Identities=16% Similarity=0.099 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHH
Q 015416 243 GMLDEAKSFFDIMVKKLKM-----DDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEE 317 (407)
Q Consensus 243 g~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 317 (407)
+.-..-..++++....+.. +..-|..+-..|+..-+ .+.++|..|...+--.-.+..|...+..+...|++++
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~ 117 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKK 117 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHH
Confidence 4445555566665552222 22334444444444332 8888888888764335566688888888889999999
Q ss_pred HHHHHHH
Q 015416 318 VVKLMEK 324 (407)
Q Consensus 318 A~~~~~~ 324 (407)
|.++++.
T Consensus 118 A~~I~~~ 124 (126)
T PF08311_consen 118 ADEIYQL 124 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988875
No 409
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=67.84 E-value=57 Score=25.92 Aligned_cols=24 Identities=13% Similarity=0.350 Sum_probs=16.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 269 MMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 269 l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
.+..|.+.|.+++|.+++++....
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~d 140 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFSD 140 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhcC
Confidence 345667777777777777777663
No 410
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=67.29 E-value=37 Score=23.12 Aligned_cols=66 Identities=14% Similarity=0.183 Sum_probs=37.8
Q ss_pred HHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHH
Q 015416 66 AMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAI 144 (407)
Q Consensus 66 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 144 (407)
+.++++.+.+.+ + .+..-...+-.+-...|+.+.|.+++..+. .|+. .|..++.++...|.-.-|.
T Consensus 21 ~~~v~d~ll~~~--i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~---------aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQG--L-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEG---------WFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcC--C-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCc---------HHHHHHHHHHHcCchhhhh
Confidence 345666666665 1 122222222222235577788888887777 5433 6777777777777655443
No 411
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=63.99 E-value=38 Score=25.02 Aligned_cols=44 Identities=18% Similarity=0.052 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHH
Q 015416 280 DEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLME 323 (407)
Q Consensus 280 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 323 (407)
++..++|..|....--.-....|...+..+...|++.+|.++++
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33566777777753223334467777888888888888888875
No 412
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.83 E-value=2e+02 Score=30.31 Aligned_cols=128 Identities=10% Similarity=0.072 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 015416 195 YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPN----LAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMM 270 (407)
Q Consensus 195 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 270 (407)
.-|..+++.+-..+..+.+.++-..+++. ++++ ..+++.+.+.....|.+-+|...+-+... ...-..+...++
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd-serrrdcLRqlv 1061 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPD-SERRRDCLRQLV 1061 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc-HHHHHHHHHHHH
Confidence 34667778888888888888888777764 2332 23667777888888888888766543221 111123556666
Q ss_pred HHHHhcCCHH------------HHHH-HHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 015416 271 KALSDGGKLD------------EILE-IVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKK 325 (407)
Q Consensus 271 ~~~~~~g~~~------------~A~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 325 (407)
..++..|.++ +... +++..-.. ........|..|...+...+++.+|-.++-+.
T Consensus 1062 ivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs-~~~mk~nyYelLYAfh~~RhN~RkaatvMYEy 1128 (1480)
T KOG4521|consen 1062 IVLFECGELEALATFPFIGLEQEVEDFLRESAARS-SPSMKKNYYELLYAFHVARHNFRKAATVMYEY 1128 (1480)
T ss_pred HHHHhccchHHHhhCCccchHHHHHHHHHHHHhhc-CccccccHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 6677666654 3334 22222222 22334456777777788889998887765543
No 413
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=62.99 E-value=57 Score=23.84 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH
Q 015416 231 VYNRLVGKLVQVGMLDEAKSFF 252 (407)
Q Consensus 231 ~~~~l~~~~~~~g~~~~A~~~~ 252 (407)
.+..|..++...|++++++.--
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA 78 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSA 78 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHH
Confidence 4455555666666666554433
No 414
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=62.62 E-value=22 Score=22.39 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=8.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 015416 235 LVGKLVQVGMLDEAKSFFDIM 255 (407)
Q Consensus 235 l~~~~~~~g~~~~A~~~~~~~ 255 (407)
++.+|...|++++|.+++..+
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 333444444444444444333
No 415
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=62.40 E-value=1e+02 Score=26.63 Aligned_cols=63 Identities=19% Similarity=0.178 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 265 SYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 265 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
++......|...|.+.+|+++.++.+..+ +.+...+..++..|...|+--.|.+-++++.+.-
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld--pL~e~~nk~lm~~la~~gD~is~~khyerya~vl 343 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD--PLSEQDNKGLMASLATLGDEISAIKHYERYAEVL 343 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHH
Confidence 34555667777888888888888877764 6666777777788888888777777777766543
No 416
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=61.98 E-value=1.2e+02 Score=27.32 Aligned_cols=161 Identities=10% Similarity=0.032 Sum_probs=93.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---hcCChHHHHHHHHHHHHCCCCCCHHHH
Q 015416 156 SPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACF---EVNRVDDGATYFRKMVDSGLRPNLAVY 232 (407)
Q Consensus 156 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~ 232 (407)
|-.+.++-.+...+...|+...|.+++++++-.- + .++......+. ..|.. + +.....-|...|
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~---e-~~~~~~F~~~~~~~~~g~~--------r-L~~~~~eNR~ff 103 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF---E-RAFHPSFSPFRSNLTSGNC--------R-LDYRRPENRQFF 103 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---H-HHHHHHhhhhhcccccCcc--------c-cCCccccchHHH
Confidence 4566677777778888888888888877765210 0 00100110000 00000 0 000111133333
Q ss_pred H---HHHHHHHhcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcC--C---CCCcHHHH
Q 015416 233 N---RLVGKLVQVGMLDEAKSFFDIMVKKLKM-DDASYKFMMKALS-DGGKLDEILEIVGGILDDG--G---IEFSEELQ 302 (407)
Q Consensus 233 ~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~--~---~~~~~~~~ 302 (407)
. ..+..+.+.|-+..|.++.+-+..-.|. |+.....+|+.|+ +.++++--+++++...... . .-|+.. |
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a-~ 182 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFA-F 182 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHH-H
Confidence 3 3466788899999999999999996666 7777777777775 6788888888888765521 0 123322 2
Q ss_pred HHHHHHHhhcCcH---------------HHHHHHHHHHHHhhHH
Q 015416 303 EFVKGELSKEGRE---------------EEVVKLMEKKEREKAE 331 (407)
Q Consensus 303 ~~l~~~~~~~g~~---------------~~A~~~~~~~~~~~~~ 331 (407)
..+-++...++. +.|...+.+....-+.
T Consensus 183 -S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 183 -SIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred -HHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 233345556666 7888888777655443
No 417
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=61.93 E-value=91 Score=25.78 Aligned_cols=99 Identities=18% Similarity=0.229 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHH--HHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCHH
Q 015416 191 NPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRP---NLAVY--NRLVGKLVQVGMLDEAKSFFDIMVK-KLKMDDA 264 (407)
Q Consensus 191 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~ 264 (407)
.+...-++.|+--|.-...+.+|-+.|..-. |+.| +...+ ..-+......|+.++|+.....+.. ....|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 3444444455444444444444444443322 2222 22222 2334445566666666666655543 2222322
Q ss_pred HHHHHHH----HHHhcCCHHHHHHHHHHHHh
Q 015416 265 SYKFMMK----ALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 265 ~~~~l~~----~~~~~g~~~~A~~~~~~~~~ 291 (407)
.+..+.. =..+.|..++|+++++.=+.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 2222221 13445556666655555444
No 418
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.36 E-value=2e+02 Score=29.50 Aligned_cols=167 Identities=16% Similarity=0.114 Sum_probs=90.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---CCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhCCCCCCHHHHH--
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRC---SPDTLSFNNLIDQLCKNGML--AEAEELYGEMSDKGVNPDEYTYG-- 198 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~--~~a~~~~~~~~~~~~~p~~~~~~-- 198 (407)
-|..|+..|...|..++|+++|.+.....- ..-...+..++.-+.+.+.. +-.+++-+-..+.........+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 588899999999999999999999877320 00111233344444444433 33333333333221110011111
Q ss_pred ----------HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--------CHHHHHHH-----HHHH
Q 015416 199 ----------LLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG--------MLDEAKSF-----FDIM 255 (407)
Q Consensus 199 ----------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~-----~~~~ 255 (407)
..+-.|......+-+..+++.+....-.++....+.++..|+..= +.+++.+. +..+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 122334566677788888888886544556677777777776421 12223222 1122
Q ss_pred Hh---cCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 256 VK---KLKM--------DDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 256 ~~---~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
.. ...| ....|......+.+.|+.++|+.++-..+..
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d 713 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDD 713 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcc
Confidence 21 1111 1333444445556888888888888777663
No 419
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=61.22 E-value=1.3e+02 Score=27.39 Aligned_cols=57 Identities=11% Similarity=0.074 Sum_probs=40.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHHH--cCCHHHHHHHHHHHHhC
Q 015416 131 ADGYCGQGRFKDAIEVFRKMGEYRCSPDTL--SFNNLIDQLCK--NGMLAEAEELYGEMSDK 188 (407)
Q Consensus 131 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~--~g~~~~a~~~~~~~~~~ 188 (407)
+..+.+.+++..|.++|+.+... ++++.. .+..+..+|.. .-++.+|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34456889999999999999886 555554 45555555553 56788899998887754
No 420
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=61.19 E-value=34 Score=20.70 Aligned_cols=26 Identities=8% Similarity=0.137 Sum_probs=14.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 267 KFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 267 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
..+..++.+.|++++|.+..+.+++.
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 34455556666666666666666653
No 421
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=60.85 E-value=72 Score=24.29 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=24.6
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 015416 185 MSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQV 242 (407)
Q Consensus 185 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 242 (407)
+.+.|++++.. -..++..+...++.-.|.++|+.+.+.+...+..|...-+..+...
T Consensus 12 lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~ 68 (145)
T COG0735 12 LKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEA 68 (145)
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHC
Confidence 33444444332 2234444444444455555555555544333344333333444433
No 422
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=60.42 E-value=74 Score=24.24 Aligned_cols=24 Identities=17% Similarity=0.459 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 87 NNSVLDALCNNGKFDEALKLFDRM 110 (407)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~~ 110 (407)
.+.++.-....+.+...+.+++.+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l 65 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHL 65 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHH
Confidence 445555555556666666666555
No 423
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=58.83 E-value=94 Score=24.98 Aligned_cols=180 Identities=12% Similarity=0.074 Sum_probs=85.6
Q ss_pred cCCCCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhC--CccCCc----chHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 015416 3 VKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLG--GVVSDG----VVYGSLMKGYFMKGMEEEAMECYNEAVGE 76 (407)
Q Consensus 3 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 76 (407)
+.|+.+|+..++.++..+.+..-...=++.+-.+..+.. +..++- .....-+..|-+.|+|.+--.+|-.....
T Consensus 1 eAGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~g 80 (233)
T PF14669_consen 1 EAGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMG 80 (233)
T ss_pred CCcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhh
Confidence 368889999999998888765544444444444444311 222211 11122233444455555544444333211
Q ss_pred CCCCCCchhhHHHHHHHHHhcCCHHH-----HHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 015416 77 NSSVKMSAVANNSVLDALCNNGKFDE-----ALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMG 151 (407)
Q Consensus 77 ~~~~~~~~~~~~~l~~~~~~~~~~~~-----A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 151 (407)
|-+.++++. |..+.....+ . ....|..+...-++.-+.+++-+.|--
T Consensus 81 -----------------ce~~~dlq~~~~~va~~Ltkd~Kd---k------~~vPFceFAetV~k~~q~~e~dK~~LG-- 132 (233)
T PF14669_consen 81 -----------------CEKFADLQRFCACVAEALTKDSKD---K------PGVPFCEFAETVCKDPQNDEVDKTLLG-- 132 (233)
T ss_pred -----------------cCCHHHHHHHHHHHHHHHHhcccc---c------CCCCHHHHHHHHhcCCccchhhhhhhh--
Confidence 111111111 1222222211 1 222455555555555444443332211
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--------------CCHHHHHHHHHHHHhcCChHHHHHHH
Q 015416 152 EYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVN--------------PDEYTYGLLMDACFEVNRVDDGATYF 217 (407)
Q Consensus 152 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--------------p~~~~~~~l~~~~~~~g~~~~a~~~~ 217 (407)
..--.++-.|-+.-+|.+..++++.|.+..+. +--...+.....+.+.|.++.|..++
T Consensus 133 --------RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vL 204 (233)
T PF14669_consen 133 --------RIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVL 204 (233)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHH
Confidence 11123455667777788888888887664322 22234455555566666666666665
Q ss_pred H
Q 015416 218 R 218 (407)
Q Consensus 218 ~ 218 (407)
+
T Consensus 205 r 205 (233)
T PF14669_consen 205 R 205 (233)
T ss_pred h
Confidence 5
No 424
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=58.78 E-value=1.1e+02 Score=25.67 Aligned_cols=46 Identities=11% Similarity=0.053 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHh----cCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHh
Q 015416 246 DEAKSFFDIMVK----KLKMDDASYKFMMK-----ALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 246 ~~A~~~~~~~~~----~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~ 291 (407)
+.|...|+.+.. ..+|...++..++- .|-..|+.++|+++.+.+..
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 455555555544 24554444333332 22346777777777666554
No 425
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=58.73 E-value=39 Score=20.48 Aligned_cols=31 Identities=10% Similarity=0.006 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHHhhHH
Q 015416 301 LQEFVKGELSKEGREEEVVKLMEKKEREKAE 331 (407)
Q Consensus 301 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 331 (407)
..-.++-++.+.|++++|.+..+.+.+..+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 3445777899999999999999999875543
No 426
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=58.58 E-value=1.3e+02 Score=26.50 Aligned_cols=27 Identities=15% Similarity=0.063 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 231 VYNRLVGKLVQVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 231 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 257 (407)
.+......|++.|+.+.|++.+.+..+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ 132 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYE 132 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444444555555555555555544433
No 427
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=58.19 E-value=1.2e+02 Score=26.12 Aligned_cols=141 Identities=11% Similarity=0.050 Sum_probs=81.2
Q ss_pred CCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCCc
Q 015416 6 FVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSS--VKMS 83 (407)
Q Consensus 6 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~ 83 (407)
++-|...+|.|+.-- ...+++--+-+++..... |..--..++..++..|++.++.+.+.++..+....... .+.|
T Consensus 77 ikfD~~~~n~l~kkn--eeki~Elde~i~~~eedn-gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiD 153 (412)
T COG5187 77 IKFDRGRMNTLLKKN--EEKIEELDERIREKEEDN-GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKID 153 (412)
T ss_pred eehhhHHHHHHHHhh--HHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchh
Confidence 455666677766431 122333323333333332 44456778999999999999999998887766554311 3333
Q ss_pred hhhH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 015416 84 AVAN-NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGE 152 (407)
Q Consensus 84 ~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 152 (407)
.... ..+.-.|....-+++-++..+.+.+.|...+... -..+|..+. +....++.+|-.+|.....
T Consensus 154 v~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrN-RyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 154 VFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRN-RYKVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhh-hHHHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 3222 1233345555557788888888888887654321 233555443 3334567777777766543
No 428
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=57.88 E-value=2.4e+02 Score=29.35 Aligned_cols=249 Identities=9% Similarity=0.006 Sum_probs=152.2
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccccc
Q 015416 45 SDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124 (407)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (407)
+++.+-...+..+.+.+. +.+...+..++... +...-...+.++.+.+........+..++.. + +.
T Consensus 633 ~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D~-----d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~-----d~ 698 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTP-PGFGPALVAALGDG-----AAAVRRAAAEGLRELVEVLPPAPALRDHLGS---P-----DP 698 (897)
T ss_pred CCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcCC-----CHHHHHHHHHHHHHHHhccCchHHHHHHhcC---C-----CH
Confidence 477777778888887776 44666666666432 4444445555555443322222344444432 1 44
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015416 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDAC 204 (407)
Q Consensus 125 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 204 (407)
.+-...+..+...+..+ .. .+-.++. .+|...-...+.++...+..+. +..+.. .++...-...+.++
T Consensus 699 ~VR~~A~~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL 766 (897)
T PRK13800 699 VVRAAALDVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGL 766 (897)
T ss_pred HHHHHHHHHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHH
Confidence 45556666666544221 22 3333333 3677666667777776655432 223332 45666777777777
Q ss_pred HhcCChHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015416 205 FEVNRVDD-GATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEIL 283 (407)
Q Consensus 205 ~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 283 (407)
...+..+. +...+..+.. .++..+-...+.++...|....+...+..+.. .++..+-...+.++...+. +++.
T Consensus 767 ~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~--d~d~~VR~~Aa~aL~~l~~-~~a~ 840 (897)
T PRK13800 767 ATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR--ASAWQVRQGAARALAGAAA-DVAV 840 (897)
T ss_pred HHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc--CCChHHHHHHHHHHHhccc-cchH
Confidence 77766543 3455556654 46788888899999999887665555555554 3566777778888888875 4577
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 284 EIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
..+..++. .++..+....+.++.+.+....+...+.......
T Consensus 841 ~~L~~~L~----D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~ 882 (897)
T PRK13800 841 PALVEALT----DPHLDVRKAAVLALTRWPGDPAARDALTTALTDS 882 (897)
T ss_pred HHHHHHhc----CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCC
Confidence 77777776 4677788888888888644556777776666544
No 429
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=57.29 E-value=1.2e+02 Score=25.52 Aligned_cols=50 Identities=12% Similarity=0.032 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhc--CCCCCcHHHHHHH-----HHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 280 DEILEIVGGILDD--GGIEFSEELQEFV-----KGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 280 ~~A~~~~~~~~~~--~~~~~~~~~~~~l-----~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
+.|.+.|+.+... ..++|...++..+ +-.|.-.|+.++|.++.++.-...
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 4555555554432 0135555544333 234566899999999888775444
No 430
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=57.20 E-value=81 Score=23.71 Aligned_cols=67 Identities=12% Similarity=0.088 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 226 RPNLAVYNRLVGKLVQVGM---LDEAKSFFDIMVKKLKM--DDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 226 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
.++..+-..+..++.+..+ ..+.+.+++.+.+..+| .......|.-++.+.++++.++++.+.+++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 4445555556666655443 33455566665542222 2334455555666666666666666666554
No 431
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.17 E-value=1.9e+02 Score=27.72 Aligned_cols=155 Identities=10% Similarity=0.057 Sum_probs=91.3
Q ss_pred CCHHHHHHHHHHHHhCCCCC------------CHHHHHHHHHHHHhcCChHHHHHHHHHH-------HHCCCCC------
Q 015416 173 GMLAEAEELYGEMSDKGVNP------------DEYTYGLLMDACFEVNRVDDGATYFRKM-------VDSGLRP------ 227 (407)
Q Consensus 173 g~~~~a~~~~~~~~~~~~~p------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~~~~~------ 227 (407)
.-++++...|.-.... ..| ...+...+...+...|+.+.+-.+.++. ....+.|
T Consensus 252 ~sYeqaq~~F~~av~~-~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIV-HDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred hHHHHHHHHHHHHHhh-cCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 4456666666655542 111 2334445556677777766555544443 3222222
Q ss_pred -------CHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCC-
Q 015416 228 -------NLAVYN---RLVGKLVQVGMLDEAKSFFDIMVKKLKM-DDASYKFMMKALS-DGGKLDEILEIVGGILDDGG- 294 (407)
Q Consensus 228 -------~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~- 294 (407)
|-..|. .-++.+.+.|-+..|.++.+-+.+-.+. |+.....+|..|+ +..+++-.+++++.....+.
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 122232 2345667789999999999888885555 7777788888775 57788888888887754432
Q ss_pred -CCCcHHHHHHHHHHHhhcCc---HHHHHHHHHHHHHh
Q 015416 295 -IEFSEELQEFVKGELSKEGR---EEEVVKLMEKKERE 328 (407)
Q Consensus 295 -~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~ 328 (407)
.-|+...-..++..|.+... ...|...+.+....
T Consensus 411 ~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~ 448 (665)
T KOG2422|consen 411 SQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKH 448 (665)
T ss_pred hhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHh
Confidence 34555555566666655544 34455555555433
No 432
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=55.37 E-value=2.9e+02 Score=29.50 Aligned_cols=157 Identities=15% Similarity=0.115 Sum_probs=98.1
Q ss_pred HHHHHhcCCHHHHHH------HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCC--CCCHHHH
Q 015416 131 ADGYCGQGRFKDAIE------VFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSD-----KGV--NPDEYTY 197 (407)
Q Consensus 131 ~~~~~~~g~~~~A~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~--~p~~~~~ 197 (407)
.......|.+.++.+ ++...-..-.++....|..+...+-+.|+.++|+..-.+..- .|. .-+...|
T Consensus 939 gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y 1018 (1236)
T KOG1839|consen 939 GQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAY 1018 (1236)
T ss_pred hhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHh
Confidence 334455566666655 554322221234556788888899999999999877655421 122 2234567
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cC---CCC
Q 015416 198 GLLMDACFEVNRVDDGATYFRKMVDS-----G--LRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK-----KL---KMD 262 (407)
Q Consensus 198 ~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~---~~~ 262 (407)
..+...+...+....|...+.+.... | .+|...+++.+-..+...+.++.|.++++.+.. .. -..
T Consensus 1019 ~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~ 1098 (1236)
T KOG1839|consen 1019 GNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELET 1098 (1236)
T ss_pred hHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhh
Confidence 77777777777888888888776642 1 233444667776667777899999999998887 11 224
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH
Q 015416 263 DASYKFMMKALSDGGKLDEILEIVG 287 (407)
Q Consensus 263 ~~~~~~l~~~~~~~g~~~~A~~~~~ 287 (407)
..++..+.+.+...+++..|....+
T Consensus 1099 ~~~~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1099 ALSYHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHh
Confidence 4556666666666666655554433
No 433
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=55.30 E-value=1.3e+02 Score=29.39 Aligned_cols=76 Identities=13% Similarity=0.196 Sum_probs=53.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHH------HHHHHHHHHHhcCCCCCccccccc
Q 015416 52 SLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFD------EALKLFDRMKNEHNPPKRLAVNLG 125 (407)
Q Consensus 52 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~A~~~~~~~~~~~~~~~~~~~~~~ 125 (407)
+|+.+|...|++..+.++++.....+.+-+.-...+|..++.+.+.|.++ .|.+.+++..-.| +..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~--------d~~ 104 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNG--------DSL 104 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCC--------cch
Confidence 79999999999999999999988665333334567888889899998764 3455555544222 445
Q ss_pred hHHHHHHHHH
Q 015416 126 SFNVMADGYC 135 (407)
Q Consensus 126 ~~~~l~~~~~ 135 (407)
+|..|+.+-.
T Consensus 105 t~all~~~sl 114 (1117)
T COG5108 105 TYALLCQASL 114 (1117)
T ss_pred HHHHHHHhhc
Confidence 6665555433
No 434
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=55.26 E-value=56 Score=28.32 Aligned_cols=70 Identities=13% Similarity=0.315 Sum_probs=50.9
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----------cCCHHHHH
Q 015416 214 ATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSD----------GGKLDEIL 283 (407)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~A~ 283 (407)
.++|+.+.+.++.|...++..+...+.+.=.+.+.+.+|+.+.. |+.-|..++..|+. .|++.--.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~nm 338 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS----DPQRFDFLLYICCSMLILVRERILEGDFTVNM 338 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 46778888888899888888888888888888899999998886 33446666666553 35555555
Q ss_pred HHHH
Q 015416 284 EIVG 287 (407)
Q Consensus 284 ~~~~ 287 (407)
++++
T Consensus 339 kLLQ 342 (370)
T KOG4567|consen 339 KLLQ 342 (370)
T ss_pred HHHh
Confidence 5544
No 435
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.30 E-value=1.3e+02 Score=29.16 Aligned_cols=90 Identities=11% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 015416 201 MDACFEVNRVDDGATYFRKMVDSGLRPNLA------VYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALS 274 (407)
Q Consensus 201 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 274 (407)
..-..+..++..+.+.|..-... ++.|.. ....|..+|....+.+.|.++++++.+..+.++.+-..+..+..
T Consensus 361 A~~~F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~ 439 (872)
T KOG4814|consen 361 AKKLFKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFL 439 (872)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Q ss_pred hcCCHHHHHHHHHHHHh
Q 015416 275 DGGKLDEILEIVGGILD 291 (407)
Q Consensus 275 ~~g~~~~A~~~~~~~~~ 291 (407)
..|.-++|+.+......
T Consensus 440 ~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 440 AEDKSEEALTCLQKIKS 456 (872)
T ss_pred HhcchHHHHHHHHHHHh
No 436
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=54.07 E-value=37 Score=21.62 Aligned_cols=50 Identities=10% Similarity=0.064 Sum_probs=29.5
Q ss_pred cCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHh
Q 015416 44 VSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCN 96 (407)
Q Consensus 44 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (407)
.|....++.++..+++..-.+.++.++.++...+ ..+..+|..-++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g---~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG---SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---SS-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHH
Confidence 4555666667777776666777777777777666 3344555554444443
No 437
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=53.88 E-value=1.5e+02 Score=25.93 Aligned_cols=59 Identities=7% Similarity=-0.120 Sum_probs=22.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSD 187 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 187 (407)
....+.....+.|+.+.-..+++..... ++......++.+.+...+.+...++++.+..
T Consensus 171 lr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 171 LRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp HHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 3333444444444433333333333321 2344444444444444444444444444444
No 438
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=53.74 E-value=1.6e+02 Score=26.10 Aligned_cols=121 Identities=14% Similarity=0.099 Sum_probs=81.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 015416 209 RVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQ------VGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEI 282 (407)
Q Consensus 209 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 282 (407)
-++++..++++....+ .|.+......|.++-. .-+|..-..+|+.+.. ..|++.+-.+-..+..+..-.+.+
T Consensus 271 lI~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~-~apSPvV~LNRAVAla~~~Gp~ag 348 (415)
T COG4941 271 LIDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ-AAPSPVVTLNRAVALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH-hCCCCeEeehHHHHHHHhhhHHhH
Confidence 3677888888888776 4777777666655432 2356677777777666 444444333334444444457788
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHH
Q 015416 283 LEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAE 331 (407)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 331 (407)
+...+-+.....+.-....+..-+..+.+.|+.++|...|++.......
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~ 397 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARN 397 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCC
Confidence 8888887776444444445556677899999999999999998765433
No 439
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=53.51 E-value=1.5e+02 Score=25.81 Aligned_cols=18 Identities=17% Similarity=0.301 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhcCCHHHH
Q 015416 265 SYKFMMKALSDGGKLDEI 282 (407)
Q Consensus 265 ~~~~l~~~~~~~g~~~~A 282 (407)
.|..|+.+++..|+.+-.
T Consensus 323 ~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELE 340 (412)
T ss_pred hhhHHHHHHhcCChHHHH
Confidence 456666666666665543
No 440
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.77 E-value=83 Score=22.51 Aligned_cols=27 Identities=26% Similarity=0.651 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGE 152 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 152 (407)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 577788888888888888888877765
No 441
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=52.63 E-value=33 Score=29.60 Aligned_cols=41 Identities=34% Similarity=0.409 Sum_probs=27.3
Q ss_pred CCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 015416 157 PDTLS-FNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTY 197 (407)
Q Consensus 157 ~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 197 (407)
|+..+ |+..|....+.||+++|+.+++++.+.|+.--..+|
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 44443 457777777788888888888888777765333333
No 442
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.02 E-value=84 Score=22.05 Aligned_cols=15 Identities=20% Similarity=0.131 Sum_probs=5.7
Q ss_pred HHHhcCCHHHHHHHH
Q 015416 238 KLVQVGMLDEAKSFF 252 (407)
Q Consensus 238 ~~~~~g~~~~A~~~~ 252 (407)
.|.+.|+.+.|.+-|
T Consensus 81 Lys~~G~~e~a~~eF 95 (121)
T COG4259 81 LYSNSGKDEQAVREF 95 (121)
T ss_pred HHhhcCChHHHHHHH
Confidence 333333333333333
No 443
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=50.91 E-value=72 Score=27.79 Aligned_cols=68 Identities=13% Similarity=0.070 Sum_probs=43.5
Q ss_pred CcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHH-HHHHHHHcCCHHHHHHHHHHHHhCC
Q 015416 7 VADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGS-LMKGYFMKGMEEEAMECYNEAVGEN 77 (407)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~ 77 (407)
.-|+..|...+....+.|.+.+...+|.+..+. .|.|+..|-. -..-+...++++.+..+|.+.+..+
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~k---hP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N 172 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTK---HPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN 172 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCceeeeeeccchhhhhccHHHHHHHHHhhhccC
Confidence 345666666666666666777777777777763 4556666654 3334555677777777777777665
No 444
>PRK12798 chemotaxis protein; Reviewed
Probab=50.34 E-value=2e+02 Score=26.32 Aligned_cols=199 Identities=13% Similarity=0.076 Sum_probs=123.8
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChH
Q 015416 137 QGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLC-KNGMLAEAEELYGEMSDKGVNPD----EYTYGLLMDACFEVNRVD 211 (407)
Q Consensus 137 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~ 211 (407)
.|+..++.+.+..+.....++....|-.|+.+-. ...++..|+.+|+...- ..|. ......-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6889999999998877777777777777776644 45688999999998764 2343 233444555667889988
Q ss_pred HHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 015416 212 DGATYFRKMVDSGLRPNLA---VYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMD--DASYKFMMKALSDGGKLDEILEIV 286 (407)
Q Consensus 212 ~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~ 286 (407)
++..+-.+...+ +.-+++ .+..+...+.+.++-.. ...+..+.....|+ ...|..+.+.-.-.|+.+-|.-.-
T Consensus 203 rf~~la~~Y~rR-F~~S~YA~~F~~~F~~~~~~~~d~~~-~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As 280 (421)
T PRK12798 203 KFEALARNYLRR-FRHSPYASQFAQRFVDLVVRLDDEIR-DARLVEILSFMDPERQRELYLRIARAALIDGKTELARFAS 280 (421)
T ss_pred HHHHHHHHHHHH-hccCchHHHHHHHHHHHHHhcccccc-HHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 887776666543 222222 33344445555443222 23355555534443 458888889999999999998888
Q ss_pred HHHHhcCCC--CCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHHHHHHHHHH
Q 015416 287 GGILDDGGI--EFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAEAKAREAEA 339 (407)
Q Consensus 287 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 339 (407)
.++.....- .+......+-..+-.-..+.+++.+.+..+........-+.+.+
T Consensus 281 ~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~Dr~Ll~ 335 (421)
T PRK12798 281 ERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSERDRALLE 335 (421)
T ss_pred HHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhhHHHHH
Confidence 887765311 11111111112223345678899999888876654444333333
No 445
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=50.23 E-value=1.7e+02 Score=25.42 Aligned_cols=52 Identities=13% Similarity=0.158 Sum_probs=27.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015416 130 MADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSD 187 (407)
Q Consensus 130 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 187 (407)
++..+.+.++.....+.+..+.. ...-...+..+...|+|..|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44455555555555555544432 22233445555666777777776666544
No 446
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=50.03 E-value=1.8e+02 Score=25.72 Aligned_cols=93 Identities=17% Similarity=0.186 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 015416 161 SFNNLIDQLCKNGMLAEAEELYGEMSDKGV-NP--DEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPN-LAVYNRLV 236 (407)
Q Consensus 161 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~ 236 (407)
.|.-=++-|.+..++..|...|.+-++... .| +...|+.-..+-...|++..++.=....+.. .|+ .-.|..=.
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--KPTHLKAYIRGA 160 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--Ccchhhhhhhhh
Confidence 455566777888888888888888765322 23 3566777777777778888888877777763 444 33565566
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 015416 237 GKLVQVGMLDEAKSFFDIM 255 (407)
Q Consensus 237 ~~~~~~g~~~~A~~~~~~~ 255 (407)
.++....++.+|..+.+..
T Consensus 161 kc~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 6666777777777666654
No 447
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=49.31 E-value=1.9e+02 Score=25.58 Aligned_cols=56 Identities=23% Similarity=0.173 Sum_probs=29.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015416 165 LIDQLCKNGMLAEAEELYGEMSDKGVNPD---EYTYGLLMDACFEVNRVDDGATYFRKMVD 222 (407)
Q Consensus 165 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 222 (407)
+.-+..+.|+..+|.+.|+.+.+. .|- ......++.++.....+.++..++.+..+
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333444567777777777666542 111 12334556666665555555555554444
No 448
>PHA02875 ankyrin repeat protein; Provisional
Probab=49.30 E-value=2.1e+02 Score=26.21 Aligned_cols=230 Identities=12% Similarity=0.040 Sum_probs=0.0
Q ss_pred CCcCCCCcCHHH--HHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcc--hHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 015416 1 MFVKGFVADPVV--YSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGV--VYGSLMKGYFMKGMEEEAMECYNEAVGE 76 (407)
Q Consensus 1 M~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 76 (407)
+.+.|..|+... ..+.+...+..|+.+ +.+.+.+. |..|+.. .....+...+..|+.+.+..+++.-...
T Consensus 21 Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~--ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~ 94 (413)
T PHA02875 21 LLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKH--GAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFA 94 (413)
T ss_pred HHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhC--CCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcc
Q ss_pred CCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 015416 77 NSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCS 156 (407)
Q Consensus 77 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 156 (407)
. ......-...+...+..|+. ++++.+.+.|..+.. ....-.+.+...+..|+.+-+.-+++.-.... .
T Consensus 95 ~---~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~---~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~-~ 163 (413)
T PHA02875 95 D---DVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDI---PNTDKFSPLHLAVMMGDIKGIELLIDHKACLD-I 163 (413)
T ss_pred c---ccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC-C
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---
Q 015416 157 PDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYG---LLMDACFEVNRVDDGATYFRKMVDSGLRPNLA--- 230 (407)
Q Consensus 157 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--- 230 (407)
.|..-++.+..+..... .++.+.+.+.|..++..... ..+......|+. ++.+.+.+.|..++..
T Consensus 164 ~d~~g~TpL~~A~~~g~-----~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~----~iv~~Ll~~gad~n~~~~~ 234 (413)
T PHA02875 164 EDCCGCTPLIIAMAKGD-----IAICKMLLDSGANIDYFGKNGCVAALCYAIENNKI----DIVRLFIKRGADCNIMFMI 234 (413)
T ss_pred CCCCCCCHHHHHHHcCC-----HHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH----HHHHHHHHCCcCcchHhhc
Q ss_pred -----HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015416 231 -----VYNRLVGKLVQVGMLDEAKSFFDIMV 256 (407)
Q Consensus 231 -----~~~~l~~~~~~~g~~~~A~~~~~~~~ 256 (407)
+...++..++.....+....+...+.
T Consensus 235 ~~~~~t~l~~~~~~~~~~~~~~~~~li~~i~ 265 (413)
T PHA02875 235 EGEECTILDMICNMCTNLESEAIDALIADIA 265 (413)
T ss_pred CCCchHHHHHHHhhcCCcccHHHHHHHHHHH
No 449
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=48.93 E-value=53 Score=27.21 Aligned_cols=56 Identities=16% Similarity=0.127 Sum_probs=44.3
Q ss_pred HHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 015416 19 GFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGEN 77 (407)
Q Consensus 19 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 77 (407)
...+.+|.+.+.++|.+.... .+.....|..+....-+.|+++.|.+.|++.++.+
T Consensus 4 ~~~~~~D~~aaaely~qal~l---ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 4 MLAESGDAEAAAELYNQALEL---APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hhcccCChHHHHHHHHHHhhc---CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 345678888888888888873 55577788888888888888888888888888776
No 450
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=48.66 E-value=2.5e+02 Score=26.82 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=18.6
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHH
Q 015416 14 SYLMLGFVRDGDSDGVFRLFEELKE 38 (407)
Q Consensus 14 ~~li~~~~~~g~~~~A~~~~~~~~~ 38 (407)
..|+.-|.+.+++++|+.++..|.-
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW 436 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNW 436 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCc
Confidence 3566778888888888888877755
No 451
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=48.64 E-value=1.2e+02 Score=22.95 Aligned_cols=68 Identities=13% Similarity=0.193 Sum_probs=39.0
Q ss_pred CchhhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 015416 82 MSAVANNSVLDALCNNGK---FDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY 153 (407)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 153 (407)
++..+...+..++.++.+ ..+.+.+|+.+.+.. .|.. .......|.-++.+.++++.++++.+.+++.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~---rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPER---RRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-Cccc---chhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 344455555555655543 455666777776522 2211 3334444566677777777777777777664
No 452
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=47.59 E-value=1.3e+02 Score=26.16 Aligned_cols=71 Identities=13% Similarity=0.203 Sum_probs=53.1
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----------cCCHHHH
Q 015416 179 EELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQ----------VGMLDEA 248 (407)
Q Consensus 179 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~A 248 (407)
.++|+.+...++.|.-.++..+.-.+.+.=.+.+++.+++.+... ..-|..|+..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 467888888899999999988888888888899999999999862 2225555555543 4677776
Q ss_pred HHHHHH
Q 015416 249 KSFFDI 254 (407)
Q Consensus 249 ~~~~~~ 254 (407)
+++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 666654
No 453
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.32 E-value=2.7e+02 Score=26.82 Aligned_cols=162 Identities=14% Similarity=0.067 Sum_probs=98.1
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCc------cccccchHHHHHHHHHhcCCHHHHHHHHHHH-------hhCCCC------
Q 015416 96 NNGKFDEALKLFDRMKNEHNPPKR------LAVNLGSFNVMADGYCGQGRFKDAIEVFRKM-------GEYRCS------ 156 (407)
Q Consensus 96 ~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~------ 156 (407)
....+++|...|.-.......... ....+.+...+..++..+|+.+-+-.+..+. ..-.+.
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 345678888888777654322110 0112334555667788889877666655443 221111
Q ss_pred -------CCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHC--
Q 015416 157 -------PDTLSFNNL---IDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACF-EVNRVDDGATYFRKMVDS-- 223 (407)
Q Consensus 157 -------~~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~-- 223 (407)
-|-..|-++ +..+.+.|.+..|.++-+-+......-|+.....+|..|+ +..+++--+++++.....
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 122223332 4456678999999999998888655446777777888775 567777777777776432
Q ss_pred -CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHh
Q 015416 224 -GLRPNLAVYNRLVGKLVQVGM---LDEAKSFFDIMVK 257 (407)
Q Consensus 224 -~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~ 257 (407)
..-|+...-.+|+..|..... -..|...+.++..
T Consensus 410 l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 410 LSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALK 447 (665)
T ss_pred HhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Confidence 234665555566666766555 3456666666655
No 454
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=47.09 E-value=1.7e+02 Score=26.11 Aligned_cols=65 Identities=12% Similarity=0.135 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHH
Q 015416 27 DGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDA 93 (407)
Q Consensus 27 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (407)
++++.+++.++...|...--+--|.++++.....|.++..+.+|++++..| ..|-......++..
T Consensus 120 eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~ag--AqPieElR~~l~di 184 (353)
T PF15297_consen 120 EEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAG--AQPIEELRHVLVDI 184 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcC--CChHHHHHHHHHHH
Confidence 345555555554322111222345555555555555555555555555555 34433333334333
No 455
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=47.02 E-value=37 Score=21.67 Aligned_cols=44 Identities=18% Similarity=0.267 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 015416 195 YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKL 239 (407)
Q Consensus 195 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 239 (407)
..++.++..++.-.-+++++.++.++...|. .+..+|..-++.+
T Consensus 9 ~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~L 52 (65)
T PF09454_consen 9 PLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSL 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 3444444444444444444444444444442 2333444333333
No 456
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=46.51 E-value=1.9e+02 Score=24.73 Aligned_cols=25 Identities=16% Similarity=0.321 Sum_probs=15.1
Q ss_pred ccchHHHHHHHHHhcCCHHHHHHHH
Q 015416 123 NLGSFNVMADGYCGQGRFKDAIEVF 147 (407)
Q Consensus 123 ~~~~~~~l~~~~~~~g~~~~A~~~~ 147 (407)
++.....+...|.+.|++.+|...|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5556666677777777766666554
No 457
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=46.45 E-value=52 Score=21.43 Aligned_cols=35 Identities=11% Similarity=0.109 Sum_probs=27.3
Q ss_pred cCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHc
Q 015416 23 DGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK 60 (407)
Q Consensus 23 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 60 (407)
.=+.+.|..++..+.. ....++..||++...+.+.
T Consensus 10 mlDtEmA~~mL~DLr~---dekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 10 MLDTEMAQQMLADLRD---DEKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHHHhcc---hhhcChHHHHHHHHHHHHc
Confidence 3467888888888877 4567889999998887664
No 458
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=46.28 E-value=73 Score=25.03 Aligned_cols=49 Identities=10% Similarity=0.015 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHH
Q 015416 51 GSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFD 101 (407)
Q Consensus 51 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 101 (407)
..++..+...+..-.|.++++.+.+.+++ .+..|.-..+..+...|-+.
T Consensus 29 ~~IL~~l~~~~~hlSa~eI~~~L~~~~~~--is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 29 LEVLRLMSLQPGAISAYDLLDLLREAEPQ--AKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhhCCC--CCcchHHHHHHHHHHCCCEE
Confidence 34555555566677888888888877743 34444444555666666543
No 459
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=46.10 E-value=1.7e+02 Score=25.99 Aligned_cols=44 Identities=18% Similarity=0.132 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQL 169 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 169 (407)
-|-.++......|.++.++.+|++.+..|..|-...-..++..+
T Consensus 142 YWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 142 YWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 34445555555555555555555555555555544444444443
No 460
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.07 E-value=3.9e+02 Score=28.35 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=67.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCC-----------------------CC-CCCc--hhhHHHHHHHHHhcCCHHHHHHH
Q 015416 53 LMKGYFMKGMEEEAMECYNEAVGEN-----------------------SS-VKMS--AVANNSVLDALCNNGKFDEALKL 106 (407)
Q Consensus 53 l~~~~~~~g~~~~A~~~~~~~~~~~-----------------------~~-~~~~--~~~~~~l~~~~~~~~~~~~A~~~ 106 (407)
++.+|...|...+|+..|.++...- .. .++. ..-|..+++.+-..+..+.+.++
T Consensus 926 lg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQl 1005 (1480)
T KOG4521|consen 926 LGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQL 1005 (1480)
T ss_pred hheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3445667788888888887765321 00 0111 23356677777778888888887
Q ss_pred HHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH----HHHHHHHHHHHcCCHH
Q 015416 107 FDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTL----SFNNLIDQLCKNGMLA 176 (407)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~ 176 (407)
-..+++.-+.. ...-..+++.+.......|.+-+|...+- . .||.. ....++..++..|.++
T Consensus 1006 A~~AIe~l~dd--~ps~a~~~t~vFnhhldlgh~~qAy~ai~---~---npdserrrdcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1006 AVKAIENLPDD--NPSVALISTTVFNHHLDLGHWFQAYKAIL---R---NPDSERRRDCLRQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHhCCCc--chhHHHHHHHHHHhhhchhhHHHHHHHHH---c---CCcHHHHHHHHHHHHHHHHhccchH
Confidence 77766543221 11133456677777777777777655432 2 24433 4555666666666543
No 461
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=46.01 E-value=1.8e+02 Score=27.73 Aligned_cols=23 Identities=9% Similarity=0.296 Sum_probs=12.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 015416 199 LLMDACFEVNRVDDGATYFRKMV 221 (407)
Q Consensus 199 ~l~~~~~~~g~~~~a~~~~~~~~ 221 (407)
.++.-|.+.+++++|..++..|-
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 34555555666666665555553
No 462
>PRK12798 chemotaxis protein; Reviewed
Probab=45.37 E-value=2.5e+02 Score=25.83 Aligned_cols=155 Identities=12% Similarity=0.006 Sum_probs=72.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcC
Q 015416 60 KGMEEEAMECYNEAVGENSSVKMSAVANNSVLDAL-CNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQG 138 (407)
Q Consensus 60 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 138 (407)
.|+..++.+.+..+.... .++..-.+..|+.+- ....+...|+++|++..-.-|. .-........-+......|
T Consensus 125 ~Gr~~~a~~~La~i~~~~--l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPG---TLvEEAALRRsi~la~~~g 199 (421)
T PRK12798 125 SGRGREARKLLAGVAPEY--LPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPG---TLVEEAALRRSLFIAAQLG 199 (421)
T ss_pred cCCHHHHHHHhhcCChhh--cCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCc---hHHHHHHHHHhhHHHHhcC
Confidence 466667766666665544 455555555555433 3345566677777665543221 1112334444455556666
Q ss_pred CHHHHHHHHHHHhhCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHH
Q 015416 139 RFKDAIEVFRKMGEYRCSPDTL---SFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPD--EYTYGLLMDACFEVNRVDDG 213 (407)
Q Consensus 139 ~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a 213 (407)
+.++...+-...... +..++. .+..+...+.+.++-..- ..+..++.. +.|+ ...|..+...-.-.|+.+-|
T Consensus 200 ~~~rf~~la~~Y~rR-F~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA 276 (421)
T PRK12798 200 DADKFEALARNYLRR-FRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSF-MDPERQRELYLRIARAALIDGKTELA 276 (421)
T ss_pred cHHHHHHHHHHHHHH-hccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHH
Confidence 666655443333221 111221 122222233333221111 112222221 1222 34566666666666776666
Q ss_pred HHHHHHHHH
Q 015416 214 ATYFRKMVD 222 (407)
Q Consensus 214 ~~~~~~~~~ 222 (407)
...-++...
T Consensus 277 ~~As~~A~~ 285 (421)
T PRK12798 277 RFASERALK 285 (421)
T ss_pred HHHHHHHHH
Confidence 666665554
No 463
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.19 E-value=1.1e+02 Score=21.56 Aligned_cols=50 Identities=18% Similarity=0.141 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 015416 63 EEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEH 114 (407)
Q Consensus 63 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 114 (407)
...-.+.+++....+..++|...+. |.-.|++.|+.+.|.+-|+.-...-
T Consensus 53 ~~~le~~~ek~~ak~~~vpPG~HAh--LGlLys~~G~~e~a~~eFetEKalF 102 (121)
T COG4259 53 TAALEKYLEKIGAKNGAVPPGYHAH--LGLLYSNSGKDEQAVREFETEKALF 102 (121)
T ss_pred HHHHHHHHHHHhhcCCCCCCcHHHH--HHHHHhhcCChHHHHHHHHHhhhhC
Confidence 3445667777777776677766554 4445889999999999998766554
No 464
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=45.17 E-value=75 Score=27.55 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=22.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 015416 87 NNSVLDALCNNGKFDEALKLFDRMKNEHNP 116 (407)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 116 (407)
|+..|....+.|++++|+++++++.+.|..
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 557777777888888888888888877754
No 465
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=44.97 E-value=33 Score=25.59 Aligned_cols=28 Identities=25% Similarity=0.589 Sum_probs=13.9
Q ss_pred CChhhHHHHHHHHHHhhCCccCCcchHHHHHH
Q 015416 24 GDSDGVFRLFEELKEKLGGVVSDGVVYGSLMK 55 (407)
Q Consensus 24 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 55 (407)
|.-..|-.+|..|... |.||| .|+.|+.
T Consensus 109 gsk~DaY~VF~kML~~--G~pPd--dW~~Ll~ 136 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLER--GNPPD--DWDALLK 136 (140)
T ss_pred ccCCcHHHHHHHHHhC--CCCCc--cHHHHHH
Confidence 3444555555555555 54444 3444443
No 466
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=44.65 E-value=2.5e+02 Score=25.60 Aligned_cols=53 Identities=17% Similarity=0.091 Sum_probs=33.9
Q ss_pred HHHHhcCChhhHHHHHHHHHHhhCCccCCcch----HHHHHHHH--HHcCCHHHHHHHHHH
Q 015416 18 LGFVRDGDSDGVFRLFEELKEKLGGVVSDGVV----YGSLMKGY--FMKGMEEEAMECYNE 72 (407)
Q Consensus 18 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~~~l~~~~--~~~g~~~~A~~~~~~ 72 (407)
..+.+.+++..|.++|+++.++ ..+|.... |..+..+| -..-++++|.+.++.
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r--~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRR--LLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhc--ccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3556788899999999988886 44344333 23333333 245677888888875
No 467
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=44.62 E-value=94 Score=27.12 Aligned_cols=71 Identities=10% Similarity=0.061 Sum_probs=55.9
Q ss_pred ccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 015416 43 VVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNS-VLDALCNNGKFDEALKLFDRMKNEHNP 116 (407)
Q Consensus 43 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~ 116 (407)
.+.|+..|...+....+.|.+.+...+|.++++.+ |.|+..|.. ...-|...++++.+..+|...++.++.
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh---P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH---PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 34578888888888888899999999999999987 556766654 334456778999999999998887654
No 468
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=44.61 E-value=65 Score=18.93 Aligned_cols=6 Identities=0% Similarity=0.318 Sum_probs=2.1
Q ss_pred HHHHHH
Q 015416 216 YFRKMV 221 (407)
Q Consensus 216 ~~~~~~ 221 (407)
++++|.
T Consensus 24 ~l~~l~ 29 (48)
T PF11848_consen 24 LLDRLQ 29 (48)
T ss_pred HHHHHH
Confidence 333333
No 469
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=44.27 E-value=30 Score=25.78 Aligned_cols=19 Identities=53% Similarity=0.581 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhhCCCCCC
Q 015416 140 FKDAIEVFRKMGEYRCSPD 158 (407)
Q Consensus 140 ~~~A~~~~~~~~~~~~~~~ 158 (407)
-..|-.+|.+|+..|.+||
T Consensus 111 k~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 111 KTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred CCcHHHHHHHHHhCCCCCc
Confidence 3344455555555555554
No 470
>PRK09462 fur ferric uptake regulator; Provisional
Probab=43.27 E-value=82 Score=24.00 Aligned_cols=16 Identities=13% Similarity=0.177 Sum_probs=8.3
Q ss_pred CHHHHHHHHHHHHhCC
Q 015416 62 MEEEAMECYNEAVGEN 77 (407)
Q Consensus 62 ~~~~A~~~~~~~~~~~ 77 (407)
..-.|.++++.+.+.+
T Consensus 32 ~h~sa~eI~~~l~~~~ 47 (148)
T PRK09462 32 HHVSAEDLYKRLIDMG 47 (148)
T ss_pred CCCCHHHHHHHHHhhC
Confidence 3445555555555544
No 471
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=43.05 E-value=3.4e+02 Score=26.76 Aligned_cols=88 Identities=8% Similarity=-0.004 Sum_probs=38.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHh--
Q 015416 200 LMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK--LKMDDASYKFMMKALSD-- 275 (407)
Q Consensus 200 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~-- 275 (407)
....+.-.|+++.|.+++-+-. +...+...+...+. ..|-+......-..+... ..|.+.-+..|+..|.+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~~~--~~~~dAVH~AIaL~---~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYRNE--FNRVDAVHFAIALA---YYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHH---HTT------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHhhc--cCcccHHHHHHHHH---HcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 3455566789999988887611 12223333333322 222222211111333331 11122567778888876
Q ss_pred -cCCHHHHHHHHHHHHhc
Q 015416 276 -GGKLDEILEIVGGILDD 292 (407)
Q Consensus 276 -~g~~~~A~~~~~~~~~~ 292 (407)
..+..+|.++|-.+...
T Consensus 339 ~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 339 EITDPREALQYLYLICLF 356 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS
T ss_pred hccCHHHHHHHHHHHHHc
Confidence 56788899988877664
No 472
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=43.05 E-value=4.1e+02 Score=27.71 Aligned_cols=216 Identities=13% Similarity=0.041 Sum_probs=115.5
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 015416 82 MSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLS 161 (407)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 161 (407)
++..+....+..+.+.+.. .+...+..++... +..+-...+.++.+.+........+..++.. +|..+
T Consensus 633 ~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~D~--------d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~V 700 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTPP-GFGPALVAALGDG--------AAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVV 700 (897)
T ss_pred CCHHHHHHHHHHHhhhcch-hHHHHHHHHHcCC--------CHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHH
Confidence 3556666666667666653 3555555555332 3334444444554443222222334344442 56665
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 015416 162 FNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQ 241 (407)
Q Consensus 162 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 241 (407)
-...+.++...+..+ .. .+-.+++ .+|...-...+.++...+..+. +..+.. .++..+-...+.++..
T Consensus 701 R~~A~~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 701 RAAALDVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLAT 768 (897)
T ss_pred HHHHHHHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHH
Confidence 555666665543221 12 2223332 3455555666666666544322 222332 4566677777777777
Q ss_pred cCCHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHH
Q 015416 242 VGMLDE-AKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVK 320 (407)
Q Consensus 242 ~g~~~~-A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 320 (407)
.+..+. +...+..+.. .+++..-...+.++...|....+...+..++. .++..+....+.++.+.+.. ++..
T Consensus 769 ~~~~~~~~~~~L~~ll~--D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~~-~a~~ 841 (897)
T PRK13800 769 LGAGGAPAGDAVRALTG--DPDPLVRAAALAALAELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAAD-VAVP 841 (897)
T ss_pred hccccchhHHHHHHHhc--CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhcccc-chHH
Confidence 665443 3444545443 35677788888888888876655555555554 24555666667777777653 4555
Q ss_pred HHHHHHHh
Q 015416 321 LMEKKERE 328 (407)
Q Consensus 321 ~~~~~~~~ 328 (407)
.+..+...
T Consensus 842 ~L~~~L~D 849 (897)
T PRK13800 842 ALVEALTD 849 (897)
T ss_pred HHHHHhcC
Confidence 55555433
No 473
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=42.70 E-value=2e+02 Score=24.00 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=16.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCC
Q 015416 202 DACFEVNRVDDGATYFRKMVDSGLR 226 (407)
Q Consensus 202 ~~~~~~g~~~~a~~~~~~~~~~~~~ 226 (407)
--+...|+++.|+++.+.++++|.+
T Consensus 91 vW~~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 91 VWRFDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred eeeeeccCHHHHHHHHHHHHHcCCC
Confidence 3345667777777777777766643
No 474
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=42.33 E-value=2.3e+02 Score=24.58 Aligned_cols=139 Identities=14% Similarity=0.209 Sum_probs=94.6
Q ss_pred CCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh-cC-ChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 015416 173 GMLAEAEELYGEMSD-KGVNPDEYTYGLLMDACFE-VN-RVDDGATYFRKMV-DSGLRPNLAVYNRLVGKLVQVGMLDEA 248 (407)
Q Consensus 173 g~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~-~g-~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A 248 (407)
....+|+.+|+...- ..+-.|..+...+++.... .+ ....-.++.+.+. +.+-.++..+...++..++..++|..-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 345566676663321 2244567777777777765 22 2222333444444 234567888889999999999999999
Q ss_pred HHHHHHHHhc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HhcCCCCCcHHHHHHHHHHHhh
Q 015416 249 KSFFDIMVKK--LKMDDASYKFMMKALSDGGKLDEILEIVGGI----LDDGGIEFSEELQEFVKGELSK 311 (407)
Q Consensus 249 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~ 311 (407)
.+++...... ...|...|..++......|+..-..++..+- +++++++.+......+-+.+.+
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 9999988874 4458889999999999999988777776643 2345677777777766665544
No 475
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=42.30 E-value=1.8e+02 Score=23.43 Aligned_cols=77 Identities=16% Similarity=0.134 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHH-HHHhcC--CHHHH
Q 015416 27 DGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLD-ALCNNG--KFDEA 103 (407)
Q Consensus 27 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~--~~~~A 103 (407)
++++++-.++... +..+-.....|++++|..-++++...-..++.-...|..+.. +++..+ .+-+|
T Consensus 20 EE~l~lsRei~r~-----------s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA 88 (204)
T COG2178 20 EEALKLSREIVRL-----------SGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEA 88 (204)
T ss_pred HHHHHHHHHHHHH-----------HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHH
Confidence 5566666666553 344445566788888888777765431111112223444443 333333 35566
Q ss_pred HHHHHHHHhcC
Q 015416 104 LKLFDRMKNEH 114 (407)
Q Consensus 104 ~~~~~~~~~~~ 114 (407)
.-++..+....
T Consensus 89 ~~l~~~l~~~~ 99 (204)
T COG2178 89 TLLYSILKDGR 99 (204)
T ss_pred HHHHHHHhcCC
Confidence 66666665543
No 476
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=42.28 E-value=1.7e+02 Score=26.74 Aligned_cols=60 Identities=13% Similarity=0.135 Sum_probs=31.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015416 15 YLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAV 74 (407)
Q Consensus 15 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 74 (407)
-|++...-.||.+...+.++.+.+..-|..|...+-..++-+|.-.|++.+|++.|-..+
T Consensus 240 GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 240 GLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666555556655555322323322222445566666666666666665543
No 477
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.34 E-value=3.1e+02 Score=25.84 Aligned_cols=279 Identities=14% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHh--------------------------hCCccCCcchHHHHHHHHHHcCCH
Q 015416 10 PVVYSYLMLGFVRDGDSDGVFRLFEELKEK--------------------------LGGVVSDGVVYGSLMKGYFMKGME 63 (407)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------------------------~~~~~~~~~~~~~l~~~~~~~g~~ 63 (407)
++-.+.-+..|.-.|+...+...++++.+. .|+....+-+|......-...|-+
T Consensus 212 vFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~ 291 (629)
T KOG2300|consen 212 VFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYF 291 (629)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHH
Q ss_pred HHHHHHHHHHHhCCCCCCCch-----------hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----cccccchHH
Q 015416 64 EEAMECYNEAVGENSSVKMSA-----------VANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKR----LAVNLGSFN 128 (407)
Q Consensus 64 ~~A~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~~~~ 128 (407)
++|.++-++++..-...+.-. .+...++-+-.-.|++.+|++-...|.+--...+. .........
T Consensus 292 ~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~ 371 (629)
T KOG2300|consen 292 KKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHM 371 (629)
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHH
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC------HHHHHHH
Q 015416 129 VMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSF--NNLIDQLCKNGMLAEAEELYGEMSDKGVNPD------EYTYGLL 200 (407)
Q Consensus 129 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~------~~~~~~l 200 (407)
.++.-+...|.++.|..-|....+.--..|...+ ..+...|.+.|+.+.-.++++.+--.+..+- ...+..-
T Consensus 372 LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~ 451 (629)
T KOG2300|consen 372 LLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVY 451 (629)
T ss_pred HHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHH
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHh------cCCCCHHHHHHH
Q 015416 201 MDACFEVNRVDDGATYFRKMVDSGLRPNLA-----VYNRLVGKLVQVGMLDEAKSFFDIMVK------KLKMDDASYKFM 269 (407)
Q Consensus 201 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~l 269 (407)
.-.....+++.+|...+.+-++..-.-|.. ....|...+...|+..++.....-... ..+.-......+
T Consensus 452 glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~ 531 (629)
T KOG2300|consen 452 GLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSIL 531 (629)
T ss_pred HHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHH
Q ss_pred HHHHHhcCC--HHHHHHHHHH
Q 015416 270 MKALSDGGK--LDEILEIVGG 288 (407)
Q Consensus 270 ~~~~~~~g~--~~~A~~~~~~ 288 (407)
-..+...|+ .+...+.|..
T Consensus 532 ~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 532 TDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred HHHHHHhCcchhhHHHHHHHH
No 478
>PTZ00131 glycophorin-binding protein; Provisional
Probab=40.82 E-value=2.1e+02 Score=23.75 Aligned_cols=239 Identities=13% Similarity=0.213 Sum_probs=143.9
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCch----------------hhHHHHHHHHHhcCCHHHHHHHHHH
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSA----------------VANNSVLDALCNNGKFDEALKLFDR 109 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~ 109 (407)
+...-..++.+++..-.+.+-+.+|-+++... .|+. ..-..++.+|...-.+.+-+.+|-+
T Consensus 111 sadpegqimkawaadpeyrkh~~i~y~ilt~t---dpnde~errnadnkedltsadpegqimka~aadpeyrkhl~i~y~ 187 (413)
T PTZ00131 111 SADPEGQIMKAWAADPEYRKHIEIFYKILTHT---DPNDEVERRNADNKEDLTSADPEGQIMKAWAADPEYRKHLEIFYK 187 (413)
T ss_pred CCCcccHHHHHHhcCHHHHHHHHHHHHHHccC---CCchHhhhcccccccccccCCcchHHHHHHhcCHHHHHHHHHHHH
Confidence 44445567777777777777777776666432 2221 1234567777777777777777777
Q ss_pred HHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHH
Q 015416 110 MKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLS----FNNLIDQLCKNGMLAEAEELYGEM 185 (407)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~a~~~~~~~ 185 (407)
++...-+.+.. +...-..++.+|+.--.+.+-+.+|.+++... .|+..+ -..++.+|...-.+-+-+.+|-++
T Consensus 188 ilt~tdpnd~t--sadpegqimka~aadpeyrkh~~v~~~ilt~t-dpndetsadpegqimka~aadpey~kh~~i~y~i 264 (413)
T PTZ00131 188 ILTHTDPNDDT--SADPEGQIMKAWAADPEYRKHLEVFHKILTHT-DPNDETSADPEGQIMKAWAADPEYLKHLEIFYKI 264 (413)
T ss_pred HHccCCCCCcc--cCCcchHHHHHHhcCHHHHHHHHHHHHHHccC-CCCccccCCcchHHHHHHhcCHHHHHHHHHHHHH
Confidence 66543322222 23334456777777777777777777777653 233222 245666776666666666776666
Q ss_pred HhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----------------HHHHHHHHHHhcCCH
Q 015416 186 SDKGVNPDE----YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLA----------------VYNRLVGKLVQVGML 245 (407)
Q Consensus 186 ~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----------------~~~~l~~~~~~~g~~ 245 (407)
+... .|+. ..-..++.+|...-.+-+-..+|-+++... .|+.. .-..++.+|+..-.+
T Consensus 265 ltht-dpndetsadpegqimka~aadpey~kh~~i~y~iltnt-dpnde~errnadnkedltsadpegqimka~aadpey 342 (413)
T PTZ00131 265 LTHT-DPNDETSADPEGQIMKAWAADPEYLKHLEIFYKILTNT-DPNDEVERRNADNKEDLTSADPEGQIMKAWAADPEY 342 (413)
T ss_pred HccC-CCcccccCCcchHHHHHHhcCHHHHHHHHHHHHHHcCC-CCchHhhhcccccccccccCCcchHHHHHHhcChHH
Confidence 6432 2221 123456666666555556666666555432 33322 124567777777777
Q ss_pred HHHHHHHHHHHhcCCCCHH----------------HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 246 DEAKSFFDIMVKKLKMDDA----------------SYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 246 ~~A~~~~~~~~~~~~~~~~----------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
.+-+.+|-+++..-.|+.. .-..++.+|...-.+.+-+.+|.+++..
T Consensus 343 rkh~~i~y~ilt~tdpnd~~errnadnkedltsadpegqimka~aadpeyrkh~~v~~~iltn 405 (413)
T PTZ00131 343 RKHLEIFYKILTHTDPNDDVERRNADNKEDLTSADPEGQIMKAWAADPEYRKHLEVFHKILTN 405 (413)
T ss_pred HHHHHHHHHHHccCCCchhhhhhccccccccccCCcchHHHHHHhcCHHHHHHHHHHHHHHcC
Confidence 7777777777764333322 2345778888888888888888888764
No 479
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=40.43 E-value=3e+02 Score=25.44 Aligned_cols=86 Identities=17% Similarity=0.201 Sum_probs=46.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--------HHhcCCHHHHHHHHHHHHhc-
Q 015416 188 KGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGK--------LVQVGMLDEAKSFFDIMVKK- 258 (407)
Q Consensus 188 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~- 258 (407)
..+.||..+.+.+...++..-..+-...+|+-..+.+ .|-...+..|+-. -.+...-+++.++++.|...
T Consensus 177 kkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L 255 (669)
T KOG3636|consen 177 KKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQL 255 (669)
T ss_pred cccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhc
Confidence 3466777777777777766666677777777666654 3333333222211 11234456677777766652
Q ss_pred CCCCHHHHHHHHHHHH
Q 015416 259 LKMDDASYKFMMKALS 274 (407)
Q Consensus 259 ~~~~~~~~~~l~~~~~ 274 (407)
.-.|..-+..|...|+
T Consensus 256 ~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 256 SVEDVPDFFSLAQYYS 271 (669)
T ss_pred ccccchhHHHHHHHHh
Confidence 2223444555555544
No 480
>PRK13342 recombination factor protein RarA; Reviewed
Probab=40.12 E-value=3e+02 Score=25.38 Aligned_cols=45 Identities=18% Similarity=0.111 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhhC---CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015416 141 KDAIEVFRKMGEY---RC-SPDTLSFNNLIDQLCKNGMLAEAEELYGEMSD 187 (407)
Q Consensus 141 ~~A~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 187 (407)
++...++...... ++ ..+......++..+ .|+...++.+++.+..
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~ 202 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAAL 202 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 4455555544321 32 34444444444432 5677777766666543
No 481
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=38.70 E-value=1.3e+02 Score=20.61 Aligned_cols=67 Identities=16% Similarity=0.084 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 015416 28 GVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEAL 104 (407)
Q Consensus 28 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 104 (407)
.+.++++.+.++ |+- +......+-.+-...|+.+.|.+++..+. ++| ..|...+.++...|+-+-|.
T Consensus 20 ~~~~v~d~ll~~--~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~------~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 20 KTRDVCDKCLEQ--GLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKE------GWFSKFLQALRETEHHELAR 86 (88)
T ss_pred hHHHHHHHHHhc--CCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCC------cHHHHHHHHHHHcCchhhhh
Confidence 345677777776 321 22222222222236699999999999998 663 35778888888888766554
No 482
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=38.66 E-value=2.6e+02 Score=24.25 Aligned_cols=26 Identities=8% Similarity=0.271 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHH
Q 015416 195 YTYGLLMDACFEVNRVDDGATYFRKM 220 (407)
Q Consensus 195 ~~~~~l~~~~~~~g~~~~a~~~~~~~ 220 (407)
..+..+...|++.++.+.+.+.+.+.
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~ 141 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRL 141 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 34444555555555555554444433
No 483
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=38.50 E-value=2.4e+02 Score=23.65 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=29.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 015416 206 EVNRVDDGATYFRKMVDSGLRP-NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMD 262 (407)
Q Consensus 206 ~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 262 (407)
..++.+.+.++|.+..+. .| ....|..+...-.+.|+++.|.+.|++..+..+++
T Consensus 7 ~~~D~~aaaely~qal~l--ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 7 ESGDAEAAAELYNQALEL--APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred ccCChHHHHHHHHHHhhc--CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 445555556666665552 22 23355555555566666666666666665544444
No 484
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=38.05 E-value=2.3e+02 Score=23.48 Aligned_cols=68 Identities=15% Similarity=0.199 Sum_probs=35.6
Q ss_pred ccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhH--HHHHHHHHhcCCHHHHHHHHHHHH
Q 015416 43 VVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVAN--NSVLDALCNNGKFDEALKLFDRMK 111 (407)
Q Consensus 43 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~ 111 (407)
+.+...-+|.|+--|.-...+.+|...|..-....++ ..+...+ ..-+......|+.+.|++....+.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~-~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPP-SIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCc-cCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 3445555666666565555555566655544332210 1122222 234555667777777777666554
No 485
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=38.05 E-value=70 Score=17.44 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=10.0
Q ss_pred HHHHHHHHhcCCHHHHHHH
Q 015416 267 KFMMKALSDGGKLDEILEI 285 (407)
Q Consensus 267 ~~l~~~~~~~g~~~~A~~~ 285 (407)
..+.-.+...|++++|+.+
T Consensus 5 y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3444455556666666666
No 486
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=37.98 E-value=3.2e+02 Score=24.93 Aligned_cols=102 Identities=16% Similarity=0.073 Sum_probs=61.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH--CCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCH-----HHH
Q 015416 199 LLMDACFEVNRVDDGATYFRKMVD--SGL-RPNL--AVYNRLVGKLVQVGMLDEAKSFFDIMVKK--LKMDD-----ASY 266 (407)
Q Consensus 199 ~l~~~~~~~g~~~~a~~~~~~~~~--~~~-~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~-----~~~ 266 (407)
.+...+-..|++++|..++.++.- .|. .-.. ....-=++.|...++|-.|.-+-+++... ..|+. .-|
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY 215 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYY 215 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHH
Confidence 455566678888888887766541 110 0000 11112245677788888888777777662 22332 346
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHH
Q 015416 267 KFMMKALSDGGKLDEILEIVGGILDDGGIEFSEE 300 (407)
Q Consensus 267 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 300 (407)
..+++...+.+.+=.+.+.|+.+.....+..++.
T Consensus 216 ~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~ 249 (439)
T KOG1498|consen 216 ELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPE 249 (439)
T ss_pred HHHHHhcccccchhhHHHHHHHHhcccccccChh
Confidence 7777777788888888888887776544444333
No 487
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=37.57 E-value=75 Score=17.64 Aligned_cols=26 Identities=31% Similarity=0.298 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015416 49 VYGSLMKGYFMKGMEEEAMECYNEAV 74 (407)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 74 (407)
+|..|+..-...++++.|..=|.+++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL 28 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKAL 28 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44455555555555555555555544
No 488
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=36.86 E-value=2.6e+02 Score=23.67 Aligned_cols=62 Identities=11% Similarity=-0.041 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 231 VYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 231 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
.+....+++...|++-++++.-..++...+.+..+|..-..+....=+.++|..-|..+++.
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 45556677777889999999999998888888999988888888888889999999888875
No 489
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=36.49 E-value=3.5e+02 Score=25.06 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=16.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 015416 53 LMKGYFMKGMEEEAMECYNEAVG 75 (407)
Q Consensus 53 l~~~~~~~g~~~~A~~~~~~~~~ 75 (407)
+..-+...|.++.|++++++-+.
T Consensus 124 laadhvAAGsFetAm~LLnrQiG 146 (422)
T PF06957_consen 124 LAADHVAAGSFETAMQLLNRQIG 146 (422)
T ss_dssp SHHHHHHCT-HHHHHHHHHHHC-
T ss_pred cHHHHHHhCCHHHHHHHHHHHhC
Confidence 45567788999999999987654
No 490
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=36.24 E-value=72 Score=17.00 Aligned_cols=13 Identities=15% Similarity=0.370 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHHH
Q 015416 210 VDDGATYFRKMVD 222 (407)
Q Consensus 210 ~~~a~~~~~~~~~ 222 (407)
++.|..+|++.+.
T Consensus 3 ~dRAR~IyeR~v~ 15 (32)
T PF02184_consen 3 FDRARSIYERFVL 15 (32)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555444
No 491
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=36.13 E-value=4.6e+02 Score=26.29 Aligned_cols=88 Identities=11% Similarity=0.114 Sum_probs=38.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 015416 204 CFEVNRVDDGATYFRKMVDSGLRPNLA--VYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDE 281 (407)
Q Consensus 204 ~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 281 (407)
+..-|+.++|..+.++|.... .|-.. -...++.+|+-.|+.....+++.-.......|..-...+.-++.-..+++.
T Consensus 511 L~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~ 589 (929)
T KOG2062|consen 511 LVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ 589 (929)
T ss_pred HHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChhh
Confidence 333445555555555555321 22111 222344445555555444444444444333333334444444444445555
Q ss_pred HHHHHHHHHhc
Q 015416 282 ILEIVGGILDD 292 (407)
Q Consensus 282 A~~~~~~~~~~ 292 (407)
...+..-+.+.
T Consensus 590 ~~s~V~lLses 600 (929)
T KOG2062|consen 590 LPSTVSLLSES 600 (929)
T ss_pred chHHHHHHhhh
Confidence 55555444443
No 492
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=35.78 E-value=4.2e+02 Score=25.77 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Q 015416 275 DGGKLDEILEIVGGILDDGGIEFSEELQEFVK 306 (407)
Q Consensus 275 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 306 (407)
+.|++.+|.+.+-.++.. .+.|..-....|.
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~-~~~Pk~f~~~LL~ 537 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKS-PIAPKSFWPLLLC 537 (566)
T ss_dssp --------------------------------
T ss_pred hhhhHHHHHHHHHHHHCC-CCCcHHHHHHHHH
Confidence 347777777776666653 3444444443333
No 493
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=35.55 E-value=2.6e+02 Score=23.32 Aligned_cols=28 Identities=14% Similarity=0.099 Sum_probs=21.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 015416 164 NLIDQLCKNGMLAEAEELYGEMSDKGVN 191 (407)
Q Consensus 164 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 191 (407)
.++--+...|+++.|+++.+.+++.|.+
T Consensus 88 ~~mvW~~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 88 TVMVWRFDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred EeeeeeeeccCHHHHHHHHHHHHHcCCC
Confidence 3444566789999999999999987743
No 494
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=35.54 E-value=2e+02 Score=21.91 Aligned_cols=27 Identities=11% Similarity=0.054 Sum_probs=13.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 015416 128 NVMADGYCGQGRFKDAIEVFRKMGEYR 154 (407)
Q Consensus 128 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 154 (407)
..++..+...++.-.|.++++.+.+.+
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~ 50 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEG 50 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhC
Confidence 344444444444455555555555444
No 495
>PRK09462 fur ferric uptake regulator; Provisional
Probab=35.52 E-value=2e+02 Score=21.89 Aligned_cols=34 Identities=18% Similarity=0.380 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 015416 210 VDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG 243 (407)
Q Consensus 210 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 243 (407)
.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3445555555554443334444444444444443
No 496
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=34.53 E-value=3.2e+02 Score=23.93 Aligned_cols=81 Identities=12% Similarity=-0.037 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhhCCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 015416 140 FKDAIEVFRKMGEYRC----SPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGAT 215 (407)
Q Consensus 140 ~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 215 (407)
...|.+.|+.....+. ..+......+.....+.|..+.-..+++.... .++......++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 4556666666665311 22344444555555566665444444444443 2345556666666666667666667
Q ss_pred HHHHHHHC
Q 015416 216 YFRKMVDS 223 (407)
Q Consensus 216 ~~~~~~~~ 223 (407)
+++.+...
T Consensus 223 ~l~~~l~~ 230 (324)
T PF11838_consen 223 LLDLLLSN 230 (324)
T ss_dssp HHHHHHCT
T ss_pred HHHHHcCC
Confidence 77766653
No 497
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=34.43 E-value=3.3e+02 Score=24.15 Aligned_cols=143 Identities=14% Similarity=0.090 Sum_probs=78.2
Q ss_pred CCCCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCC
Q 015416 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENS--SVK 81 (407)
Q Consensus 4 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~ 81 (407)
.+++.|...++.+...- ...+++-.+..+...+.. |-.--...+......|++.|+-+.|.+.+.+...... +.+
T Consensus 64 ~~i~~D~~~l~~m~~~n--eeki~eld~~iedaeenl-GE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~k 140 (393)
T KOG0687|consen 64 LVIKLDQDLLNSMKKAN--EEKIKELDEKIEDAEENL-GESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHK 140 (393)
T ss_pred cceeccHHHHHHHHHhh--HHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccc
Confidence 34556666677666542 223444444444444431 3334556778888888888988888887766543321 145
Q ss_pred CchhhHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 015416 82 MSAVANNS-VLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGE 152 (407)
Q Consensus 82 ~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 152 (407)
.|...+.. ++-.|....-+.+-++..+.+.+.|...+.-. -..+|..+- +...+++.+|-.+|-+...
T Consensus 141 iDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrN-RlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 141 IDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRN-RLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhh-hHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 55554433 22233333334555555555666665543321 333555443 4445677888777766543
No 498
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.93 E-value=2.4e+02 Score=28.74 Aligned_cols=45 Identities=11% Similarity=0.017 Sum_probs=23.2
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 240 VQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGI 289 (407)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 289 (407)
..+|+++.|++.-.++ .+..+|..|+......|+.+-|...|++.
T Consensus 654 Le~gnle~ale~akkl-----dd~d~w~rLge~Al~qgn~~IaEm~yQ~~ 698 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKL-----DDKDVWERLGEEALRQGNHQIAEMCYQRT 698 (1202)
T ss_pred hhcCCHHHHHHHHHhc-----CcHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 3445555555444432 24455555555555555555555555544
No 499
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=33.57 E-value=2.8e+02 Score=26.94 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHHHHHh-cCCCC
Q 015416 241 QVGMLDEAKSFFDIMVK-KLKMD 262 (407)
Q Consensus 241 ~~g~~~~A~~~~~~~~~-~~~~~ 262 (407)
+.|++.+|.+.+-.+.. ...|.
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk 529 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPK 529 (566)
T ss_dssp -----------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcH
Confidence 34777777777666665 33343
No 500
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=33.55 E-value=2.4e+02 Score=22.18 Aligned_cols=34 Identities=9% Similarity=0.091 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 015416 210 VDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG 243 (407)
Q Consensus 210 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 243 (407)
.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 41 hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 41 AISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3344444444444443333333333333444333
Done!