Query 015416
Match_columns 407
No_of_seqs 663 out of 2654
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 12:14:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015416.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015416hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 5.1E-32 1.8E-36 258.8 31.1 346 4-390 194-582 (597)
2 2xpi_A Anaphase-promoting comp 100.0 6.4E-31 2.2E-35 251.2 27.3 303 9-329 271-580 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 7E-29 2.4E-33 224.4 36.8 339 9-389 32-370 (388)
4 4g26_A Pentatricopeptide repea 100.0 1.5E-30 5.1E-35 239.9 23.3 196 2-206 17-222 (501)
5 4g26_A Pentatricopeptide repea 100.0 2E-30 6.9E-35 239.0 23.4 207 27-242 7-223 (501)
6 1w3b_A UDP-N-acetylglucosamine 100.0 3.1E-28 1.1E-32 220.1 34.6 306 7-329 64-369 (388)
7 2y4t_A DNAJ homolog subfamily 100.0 1.5E-25 5.1E-30 206.5 36.6 306 7-329 23-359 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 7E-25 2.4E-29 202.0 31.2 324 27-390 9-361 (450)
9 3ieg_A DNAJ homolog subfamily 99.9 3.1E-23 1E-27 184.8 40.3 308 9-330 2-337 (359)
10 2gw1_A Mitochondrial precursor 99.9 2E-24 6.7E-29 202.4 32.4 361 10-391 6-482 (514)
11 3fp2_A TPR repeat-containing p 99.9 1.1E-23 3.7E-28 198.5 34.8 368 10-399 25-503 (537)
12 3hym_B Cell division cycle pro 99.9 2.8E-23 9.5E-28 183.0 35.2 296 5-316 17-322 (330)
13 3ieg_A DNAJ homolog subfamily 99.9 2.4E-22 8.3E-27 179.0 31.9 307 46-391 2-339 (359)
14 2gw1_A Mitochondrial precursor 99.9 4.1E-22 1.4E-26 186.6 33.9 316 7-329 36-445 (514)
15 3hym_B Cell division cycle pro 99.9 5.1E-22 1.7E-26 174.9 32.3 274 42-329 17-300 (330)
16 1fch_A Peroxisomal targeting s 99.9 5.4E-23 1.8E-27 184.2 25.7 294 20-326 35-357 (368)
17 4eqf_A PEX5-related protein; a 99.9 4.9E-22 1.7E-26 177.8 24.7 267 46-324 64-352 (365)
18 1fch_A Peroxisomal targeting s 99.9 2.7E-21 9.1E-26 173.1 27.1 272 10-291 64-358 (368)
19 3fp2_A TPR repeat-containing p 99.9 3E-20 1E-24 174.9 35.3 309 7-331 56-494 (537)
20 4eqf_A PEX5-related protein; a 99.9 1.7E-21 5.7E-26 174.4 25.3 273 9-290 64-354 (365)
21 3cv0_A Peroxisome targeting si 99.9 4.1E-21 1.4E-25 168.8 26.7 279 9-325 20-312 (327)
22 3cv0_A Peroxisome targeting si 99.9 4.5E-21 1.6E-25 168.6 26.5 251 46-331 20-272 (327)
23 3mkr_A Coatomer subunit epsilo 99.9 5.4E-20 1.9E-24 158.6 27.1 276 17-321 6-287 (291)
24 4g1t_A Interferon-induced prot 99.9 4.7E-19 1.6E-23 164.1 29.8 362 8-388 49-460 (472)
25 3mkr_A Coatomer subunit epsilo 99.8 2.6E-18 8.8E-23 148.1 29.1 256 54-330 6-266 (291)
26 2xm6_A Protein corresponding t 99.8 7.4E-17 2.5E-21 150.0 40.5 288 9-329 38-361 (490)
27 2xm6_A Protein corresponding t 99.8 7.1E-17 2.4E-21 150.1 40.1 288 9-329 74-397 (490)
28 3u4t_A TPR repeat-containing p 99.8 1.4E-17 4.7E-22 142.4 27.8 243 13-266 6-258 (272)
29 2pl2_A Hypothetical conserved 99.8 2E-18 6.7E-23 142.4 21.7 210 44-289 2-211 (217)
30 3uq3_A Heat shock protein STI1 99.8 7E-18 2.4E-22 142.8 25.6 227 10-257 5-235 (258)
31 2pl2_A Hypothetical conserved 99.8 3.5E-18 1.2E-22 140.9 22.2 198 123-326 4-212 (217)
32 3u4t_A TPR repeat-containing p 99.8 2E-17 6.9E-22 141.3 27.5 254 46-310 2-266 (272)
33 3uq3_A Heat shock protein STI1 99.8 8.5E-18 2.9E-22 142.3 24.2 231 47-292 5-236 (258)
34 2h6f_A Protein farnesyltransfe 99.8 8.9E-18 3E-22 149.6 23.9 249 47-310 97-364 (382)
35 2h6f_A Protein farnesyltransfe 99.8 3.6E-17 1.2E-21 145.7 25.1 250 10-275 97-365 (382)
36 3sf4_A G-protein-signaling mod 99.8 3.1E-18 1.1E-22 155.1 17.0 285 45-329 7-337 (406)
37 2ooe_A Cleavage stimulation fa 99.8 4.5E-16 1.5E-20 146.2 32.1 303 8-327 11-419 (530)
38 1xnf_A Lipoprotein NLPI; TPR, 99.8 1E-17 3.5E-22 143.3 18.8 222 23-257 18-243 (275)
39 1b89_A Protein (clathrin heavy 99.8 4E-18 1.4E-22 150.5 16.0 270 8-324 30-307 (449)
40 2q7f_A YRRB protein; TPR, prot 99.8 4.2E-17 1.4E-21 136.7 21.2 212 46-269 22-233 (243)
41 1ouv_A Conserved hypothetical 99.8 1.9E-15 6.6E-20 129.1 31.7 223 46-292 5-251 (273)
42 4g1t_A Interferon-induced prot 99.8 1.8E-16 6.2E-21 146.7 26.8 311 9-331 93-462 (472)
43 3sf4_A G-protein-signaling mod 99.8 1.6E-17 5.4E-22 150.5 18.9 307 7-316 6-364 (406)
44 2ho1_A Type 4 fimbrial biogene 99.8 7E-16 2.4E-20 130.1 27.8 201 84-292 37-238 (252)
45 1ouv_A Conserved hypothetical 99.8 3.4E-15 1.2E-19 127.6 32.4 226 83-331 5-254 (273)
46 1xnf_A Lipoprotein NLPI; TPR, 99.8 1.9E-17 6.6E-22 141.6 18.3 249 58-322 16-269 (275)
47 2vq2_A PILW, putative fimbrial 99.8 1.2E-15 3.9E-20 126.2 27.5 199 85-291 9-210 (225)
48 2ho1_A Type 4 fimbrial biogene 99.8 6E-16 2E-20 130.6 25.8 208 47-265 37-245 (252)
49 2vq2_A PILW, putative fimbrial 99.8 1E-15 3.5E-20 126.5 26.6 208 47-264 8-217 (225)
50 2q7f_A YRRB protein; TPR, prot 99.8 1.1E-16 3.8E-21 134.2 20.8 213 82-305 21-233 (243)
51 1b89_A Protein (clathrin heavy 99.8 4.1E-18 1.4E-22 150.4 12.3 251 22-323 15-267 (449)
52 4a1s_A PINS, partner of inscut 99.8 3.5E-17 1.2E-21 148.6 18.7 286 46-331 47-375 (411)
53 3spa_A Mtrpol, DNA-directed RN 99.8 3.8E-18 1.3E-22 162.6 12.2 163 124-290 127-308 (1134)
54 4a1s_A PINS, partner of inscut 99.8 3E-17 1E-21 149.1 17.7 280 10-292 48-372 (411)
55 3ulq_A Response regulator aspa 99.8 2.4E-16 8.3E-21 141.8 23.1 303 20-329 22-369 (383)
56 2ooe_A Cleavage stimulation fa 99.7 2.8E-14 9.7E-19 134.0 37.5 220 102-330 256-494 (530)
57 3ro2_A PINS homolog, G-protein 99.7 6.3E-17 2.1E-21 142.3 17.7 279 10-291 5-331 (338)
58 3ro2_A PINS homolog, G-protein 99.7 6.5E-17 2.2E-21 142.2 17.0 283 47-329 5-333 (338)
59 3spa_A Mtrpol, DNA-directed RN 99.7 1.9E-17 6.7E-22 157.8 9.3 152 158-313 126-286 (1134)
60 2ond_A Cleavage stimulation fa 99.7 3E-14 1E-18 124.0 28.7 238 10-261 8-273 (308)
61 4abn_A Tetratricopeptide repea 99.7 1.6E-15 5.6E-20 139.9 21.6 216 99-326 83-319 (474)
62 3q15_A PSP28, response regulat 99.7 1.1E-14 3.9E-19 130.6 26.5 322 6-331 6-368 (378)
63 2ond_A Cleavage stimulation fa 99.7 8.4E-14 2.9E-18 121.2 29.6 220 101-330 33-272 (308)
64 3vtx_A MAMA; tetratricopeptide 99.7 7.7E-15 2.6E-19 117.4 21.1 165 10-187 5-169 (184)
65 4abn_A Tetratricopeptide repea 99.7 2.7E-15 9.2E-20 138.5 20.2 215 62-289 83-318 (474)
66 3vtx_A MAMA; tetratricopeptide 99.7 4.9E-14 1.7E-18 112.7 24.1 167 158-328 4-170 (184)
67 1xi4_A Clathrin heavy chain; a 99.7 2.9E-13 1E-17 133.4 33.2 313 14-388 989-1310(1630)
68 3nf1_A KLC 1, kinesin light ch 99.7 7.5E-16 2.6E-20 134.1 13.2 172 47-222 27-223 (311)
69 1xi4_A Clathrin heavy chain; a 99.7 2.5E-13 8.5E-18 134.0 31.2 281 16-354 1055-1337(1630)
70 3e4b_A ALGK; tetratricopeptide 99.7 4.1E-15 1.4E-19 136.4 17.8 276 16-326 9-314 (452)
71 3nf1_A KLC 1, kinesin light ch 99.6 2.7E-15 9.3E-20 130.5 14.5 248 80-329 23-308 (311)
72 3ulq_A Response regulator aspa 99.6 1.2E-14 4E-19 130.8 18.2 259 31-292 85-368 (383)
73 1hz4_A MALT regulatory protein 99.6 2.7E-13 9.2E-18 121.3 26.9 275 53-327 20-321 (373)
74 3e4b_A ALGK; tetratricopeptide 99.6 2.2E-13 7.6E-18 124.9 26.6 193 123-331 175-390 (452)
75 1hz4_A MALT regulatory protein 99.6 4.1E-13 1.4E-17 120.1 26.7 277 13-292 17-322 (373)
76 4gyw_A UDP-N-acetylglucosamine 99.6 1E-13 3.5E-18 133.1 19.4 166 46-222 8-173 (723)
77 4gyw_A UDP-N-acetylglucosamine 99.6 2.2E-13 7.4E-18 130.9 19.8 166 9-187 8-173 (723)
78 3as5_A MAMA; tetratricopeptide 99.6 1.5E-12 5.2E-17 103.7 21.7 163 126-291 10-172 (186)
79 3as5_A MAMA; tetratricopeptide 99.6 1.3E-12 4.6E-17 104.0 21.2 166 160-329 9-174 (186)
80 4i17_A Hypothetical protein; T 99.5 8.2E-13 2.8E-17 109.5 20.4 209 8-237 5-222 (228)
81 3q15_A PSP28, response regulat 99.5 5.6E-13 1.9E-17 119.5 20.2 241 50-292 104-365 (378)
82 4i17_A Hypothetical protein; T 99.5 2E-12 6.8E-17 107.1 21.6 196 81-292 4-209 (228)
83 1qqe_A Vesicular transport pro 99.5 1.4E-12 4.7E-17 112.5 19.1 239 27-290 2-267 (292)
84 3edt_B KLC 2, kinesin light ch 99.5 3.2E-13 1.1E-17 115.5 14.0 164 20-187 11-197 (283)
85 3qky_A Outer membrane assembly 99.5 3.3E-12 1.1E-16 108.2 18.3 191 8-222 13-223 (261)
86 3qky_A Outer membrane assembly 99.5 3.3E-12 1.1E-16 108.2 17.8 106 45-153 13-126 (261)
87 3edt_B KLC 2, kinesin light ch 99.5 1.4E-12 4.9E-17 111.4 15.5 232 95-328 12-281 (283)
88 1qqe_A Vesicular transport pro 99.4 3E-12 1E-16 110.4 14.6 214 25-257 32-268 (292)
89 3urz_A Uncharacterized protein 99.4 1E-11 3.5E-16 101.2 17.0 75 90-171 60-134 (208)
90 3urz_A Uncharacterized protein 99.4 1.7E-11 6E-16 99.8 17.9 175 10-200 4-196 (208)
91 2yhc_A BAMD, UPF0169 lipoprote 99.4 4.5E-11 1.5E-15 98.7 20.4 190 9-224 3-214 (225)
92 3rjv_A Putative SEL1 repeat pr 99.4 1E-10 3.4E-15 95.6 20.0 174 28-224 4-198 (212)
93 2pzi_A Probable serine/threoni 99.4 1.2E-11 4.2E-16 119.1 16.4 131 83-222 432-562 (681)
94 4ga2_A E3 SUMO-protein ligase 99.3 3.7E-12 1.3E-16 97.9 9.4 141 20-173 7-148 (150)
95 3dra_A Protein farnesyltransfe 99.3 1.4E-09 5E-14 93.0 26.3 236 59-307 44-301 (306)
96 2pzi_A Probable serine/threoni 99.3 9.1E-11 3.1E-15 113.1 20.7 174 95-278 402-583 (681)
97 3mv2_B Coatomer subunit epsilo 99.3 1E-09 3.4E-14 93.1 24.4 178 103-292 85-282 (310)
98 2fo7_A Synthetic consensus TPR 99.3 8.2E-11 2.8E-15 88.1 16.2 127 50-186 4-130 (136)
99 2yhc_A BAMD, UPF0169 lipoprote 99.3 1.7E-10 5.7E-15 95.3 19.4 193 46-262 3-217 (225)
100 2fo7_A Synthetic consensus TPR 99.3 2.4E-10 8.3E-15 85.4 17.8 128 162-291 4-131 (136)
101 4ga2_A E3 SUMO-protein ligase 99.3 1.5E-11 5.1E-16 94.5 10.6 145 53-208 3-148 (150)
102 3rjv_A Putative SEL1 repeat pr 99.3 5.7E-10 1.9E-14 91.1 20.6 173 66-257 5-196 (212)
103 3dra_A Protein farnesyltransfe 99.3 3.6E-09 1.2E-13 90.5 26.0 239 18-270 40-300 (306)
104 3mv2_B Coatomer subunit epsilo 99.3 1.6E-09 5.4E-14 91.9 23.0 204 66-293 85-306 (310)
105 4e6h_A MRNA 3'-END-processing 99.3 2.5E-08 8.7E-13 94.8 32.9 138 7-152 63-222 (679)
106 3qou_A Protein YBBN; thioredox 99.3 2.1E-10 7.2E-15 98.4 16.9 163 83-256 116-282 (287)
107 4e6h_A MRNA 3'-END-processing 99.3 1.7E-08 5.7E-13 96.1 31.2 206 125-331 344-573 (679)
108 3qou_A Protein YBBN; thioredox 99.3 2.7E-10 9.1E-15 97.8 17.0 169 156-327 114-283 (287)
109 2ifu_A Gamma-SNAP; membrane fu 99.3 1.6E-10 5.5E-15 100.3 15.8 236 23-320 4-253 (307)
110 2r5s_A Uncharacterized protein 99.2 1.5E-10 5.1E-15 91.5 13.9 160 50-220 9-170 (176)
111 2vsy_A XCC0866; transferase, g 99.2 2.4E-10 8.2E-15 108.2 17.0 154 23-189 2-158 (568)
112 2r5s_A Uncharacterized protein 99.2 1.7E-10 5.7E-15 91.3 13.4 61 126-187 8-68 (176)
113 2vsy_A XCC0866; transferase, g 99.2 1.4E-09 4.8E-14 102.9 21.4 154 137-293 2-158 (568)
114 2ifu_A Gamma-SNAP; membrane fu 99.2 1.1E-09 3.7E-14 95.0 16.3 159 167-326 44-222 (307)
115 4f3v_A ESX-1 secretion system 99.2 1.2E-09 4.2E-14 91.3 15.6 196 59-260 18-239 (282)
116 3q7a_A Farnesyltransferase alp 99.1 3.6E-08 1.2E-12 85.3 24.9 220 61-292 68-331 (349)
117 4gco_A Protein STI-1; structur 99.1 9.5E-10 3.2E-14 81.5 12.1 96 49-153 15-110 (126)
118 4gco_A Protein STI-1; structur 99.1 4.7E-09 1.6E-13 77.7 15.7 110 195-307 14-123 (126)
119 2qfc_A PLCR protein; TPR, HTH, 99.1 1.1E-07 3.8E-12 81.6 25.8 169 160-328 76-266 (293)
120 1a17_A Serine/threonine protei 99.1 8.1E-09 2.8E-13 80.3 16.7 129 195-326 14-144 (166)
121 3gyz_A Chaperone protein IPGC; 99.1 8.3E-09 2.8E-13 78.8 16.2 98 230-329 37-134 (151)
122 1hh8_A P67PHOX, NCF-2, neutrop 99.1 2.3E-08 7.8E-13 81.4 19.9 91 127-222 9-99 (213)
123 3q7a_A Farnesyltransferase alp 99.1 1.2E-07 4E-12 82.1 24.9 227 93-328 63-331 (349)
124 1hh8_A P67PHOX, NCF-2, neutrop 99.1 9.1E-09 3.1E-13 83.8 17.2 125 162-291 9-149 (213)
125 3gyz_A Chaperone protein IPGC; 99.1 3.5E-09 1.2E-13 80.9 13.2 103 46-159 35-137 (151)
126 2c2l_A CHIP, carboxy terminus 99.0 7.9E-10 2.7E-14 94.5 10.3 193 84-291 4-198 (281)
127 1a17_A Serine/threonine protei 99.0 6.9E-09 2.4E-13 80.7 14.9 128 48-185 14-143 (166)
128 2c2l_A CHIP, carboxy terminus 99.0 2.1E-09 7.1E-14 91.9 12.6 194 9-222 3-198 (281)
129 3u3w_A Transcriptional activat 99.0 3.1E-08 1.1E-12 85.1 20.0 162 130-291 81-265 (293)
130 3u3w_A Transcriptional activat 99.0 2.3E-08 7.7E-13 86.0 19.1 168 53-221 81-264 (293)
131 2qfc_A PLCR protein; TPR, HTH, 99.0 1.5E-08 5E-13 87.2 17.8 170 86-255 77-263 (293)
132 4f3v_A ESX-1 secretion system 99.0 2.6E-08 8.8E-13 83.4 18.3 197 96-306 18-248 (282)
133 2uy1_A Cleavage stimulation fa 99.0 9.8E-07 3.3E-11 81.4 30.0 298 8-325 45-380 (493)
134 1p5q_A FKBP52, FK506-binding p 99.0 8.5E-10 2.9E-14 96.8 8.9 152 24-185 127-291 (336)
135 2vyi_A SGTA protein; chaperone 99.0 7.4E-09 2.5E-13 76.7 12.9 121 8-140 10-130 (131)
136 1na0_A Designed protein CTPR3; 99.0 3.5E-08 1.2E-12 72.3 16.2 113 195-310 10-122 (125)
137 2lni_A Stress-induced-phosphop 99.0 1E-08 3.5E-13 76.4 13.3 120 7-138 13-132 (133)
138 2vyi_A SGTA protein; chaperone 99.0 7.3E-09 2.5E-13 76.8 12.4 119 46-174 11-129 (131)
139 2lni_A Stress-induced-phosphop 99.0 1.8E-08 6.1E-13 75.0 14.6 117 194-313 16-132 (133)
140 1na0_A Designed protein CTPR3; 99.0 1.6E-08 5.5E-13 74.2 14.1 115 10-136 9-123 (125)
141 3dss_A Geranylgeranyl transfer 99.0 8.9E-07 3.1E-11 76.2 26.7 165 59-235 41-233 (331)
142 2vgx_A Chaperone SYCD; alterna 99.0 6.2E-09 2.1E-13 79.5 12.1 98 194-292 21-118 (148)
143 2e2e_A Formate-dependent nitri 99.0 5.4E-09 1.8E-13 82.5 11.7 122 21-154 21-145 (177)
144 1p5q_A FKBP52, FK506-binding p 99.0 4.8E-08 1.6E-12 85.7 18.6 131 195-327 148-293 (336)
145 3gw4_A Uncharacterized protein 99.0 5.7E-09 1.9E-13 84.2 11.9 163 21-186 3-174 (203)
146 2vgx_A Chaperone SYCD; alterna 99.0 3.9E-09 1.3E-13 80.6 10.1 95 85-186 22-116 (148)
147 2e2e_A Formate-dependent nitri 99.0 5.8E-09 2E-13 82.3 11.5 121 58-188 21-144 (177)
148 3gw4_A Uncharacterized protein 99.0 9.1E-09 3.1E-13 83.0 12.7 161 58-221 3-174 (203)
149 2fbn_A 70 kDa peptidylprolyl i 98.9 1.9E-09 6.4E-14 86.9 7.4 153 17-179 11-176 (198)
150 3dss_A Geranylgeranyl transfer 98.9 1E-06 3.5E-11 75.9 24.7 182 11-206 27-239 (331)
151 3upv_A Heat shock protein STI1 98.9 4.6E-08 1.6E-12 72.2 13.1 100 9-114 3-102 (126)
152 3sz7_A HSC70 cochaperone (SGT) 98.9 6.9E-08 2.3E-12 75.0 14.6 98 194-292 11-108 (164)
153 3upv_A Heat shock protein STI1 98.9 1.3E-07 4.6E-12 69.7 15.4 95 196-291 6-100 (126)
154 2xcb_A PCRH, regulatory protei 98.9 5.3E-08 1.8E-12 73.7 13.1 97 195-292 19-115 (142)
155 4b4t_Q 26S proteasome regulato 98.9 8.8E-07 3E-11 80.5 23.6 61 161-221 137-202 (434)
156 1elw_A TPR1-domain of HOP; HOP 98.9 2.1E-07 7.2E-12 67.3 15.8 97 195-292 5-101 (118)
157 4b4t_Q 26S proteasome regulato 98.9 5.1E-07 1.7E-11 82.1 21.7 201 91-291 11-244 (434)
158 1elw_A TPR1-domain of HOP; HOP 98.9 1.2E-07 4.1E-12 68.6 14.4 102 9-116 3-104 (118)
159 4gcn_A Protein STI-1; structur 98.8 5.1E-08 1.8E-12 72.1 12.1 111 47-162 8-119 (127)
160 2xcb_A PCRH, regulatory protei 98.8 9.7E-08 3.3E-12 72.2 13.6 101 228-330 17-117 (142)
161 2uy1_A Cleavage stimulation fa 98.8 4.5E-06 1.5E-10 76.9 27.2 294 11-327 16-348 (493)
162 4gcn_A Protein STI-1; structur 98.8 9.2E-08 3.2E-12 70.7 13.1 96 196-292 10-112 (127)
163 2fbn_A 70 kDa peptidylprolyl i 98.8 6.9E-08 2.4E-12 77.6 12.8 131 10-152 38-185 (198)
164 3sz7_A HSC70 cochaperone (SGT) 98.8 1.1E-07 3.9E-12 73.8 13.7 103 8-116 9-111 (164)
165 2dba_A Smooth muscle cell asso 98.8 3.9E-07 1.3E-11 69.0 16.4 97 194-292 28-128 (148)
166 3q49_B STIP1 homology and U bo 98.8 1.6E-07 5.4E-12 70.3 14.0 99 193-292 8-106 (137)
167 3q49_B STIP1 homology and U bo 98.8 2.7E-07 9.2E-12 69.0 15.1 104 226-331 6-109 (137)
168 1elr_A TPR2A-domain of HOP; HO 98.8 1.3E-07 4.4E-12 69.9 12.4 110 195-308 5-121 (131)
169 1hxi_A PEX5, peroxisome target 98.8 1.3E-07 4.4E-12 69.2 11.7 90 235-326 23-112 (121)
170 1hxi_A PEX5, peroxisome target 98.8 7.5E-08 2.6E-12 70.5 10.4 95 49-152 19-113 (121)
171 2kck_A TPR repeat; tetratricop 98.8 1.2E-07 4.1E-12 67.9 11.4 104 9-116 5-109 (112)
172 2kck_A TPR repeat; tetratricop 98.7 2.4E-07 8.1E-12 66.3 12.8 97 195-292 7-106 (112)
173 2dba_A Smooth muscle cell asso 98.7 8.5E-07 2.9E-11 67.1 16.3 110 158-270 27-140 (148)
174 1elr_A TPR2A-domain of HOP; HO 98.7 5.6E-08 1.9E-12 71.9 9.2 114 48-166 5-119 (131)
175 3ro3_A PINS homolog, G-protein 98.7 1.2E-07 4.1E-12 73.0 11.0 141 11-151 10-156 (164)
176 2xev_A YBGF; tetratricopeptide 98.7 6.1E-07 2.1E-11 66.2 14.4 97 53-152 8-104 (129)
177 2xev_A YBGF; tetratricopeptide 98.7 5.9E-07 2E-11 66.3 13.9 101 13-116 5-108 (129)
178 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 7.3E-07 2.5E-11 81.6 15.6 128 195-325 269-412 (457)
179 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 5.8E-07 2E-11 82.3 14.8 121 12-144 270-405 (457)
180 3ro3_A PINS homolog, G-protein 98.6 2.3E-07 7.8E-12 71.4 10.2 95 196-290 51-156 (164)
181 3rkv_A Putative peptidylprolyl 98.6 5.1E-07 1.8E-11 69.8 11.8 64 229-292 63-126 (162)
182 3k9i_A BH0479 protein; putativ 98.6 1.1E-07 3.7E-12 69.2 7.5 86 207-292 3-90 (117)
183 1ihg_A Cyclophilin 40; ppiase 98.6 8.3E-07 2.8E-11 78.7 13.9 122 197-320 226-362 (370)
184 3rkv_A Putative peptidylprolyl 98.6 6.9E-07 2.4E-11 69.1 11.3 99 49-153 13-126 (162)
185 1wao_1 Serine/threonine protei 98.6 2.1E-07 7.3E-12 85.6 9.7 124 13-148 9-134 (477)
186 1ihg_A Cyclophilin 40; ppiase 98.6 6.8E-07 2.3E-11 79.2 12.6 123 49-178 225-360 (370)
187 2if4_A ATFKBP42; FKBP-like, al 98.6 2.8E-07 9.5E-12 80.8 10.0 151 159-330 179-330 (338)
188 2hr2_A Hypothetical protein; a 98.5 2.7E-06 9.2E-11 64.3 13.4 96 232-329 14-132 (159)
189 3k9i_A BH0479 protein; putativ 98.5 1.4E-07 4.9E-12 68.6 6.4 92 22-116 2-93 (117)
190 1wao_1 Serine/threonine protei 98.5 3.5E-07 1.2E-11 84.2 10.1 123 165-289 12-136 (477)
191 2hr2_A Hypothetical protein; a 98.5 1.9E-06 6.6E-11 65.1 12.1 95 198-292 15-131 (159)
192 2if4_A ATFKBP42; FKBP-like, al 98.4 6.7E-07 2.3E-11 78.4 9.2 150 123-292 178-328 (338)
193 1dce_A Protein (RAB geranylger 98.4 2E-05 6.7E-10 73.9 18.7 174 22-209 40-241 (567)
194 1dce_A Protein (RAB geranylger 98.4 3.4E-05 1.2E-09 72.3 20.3 174 139-317 44-244 (567)
195 2kat_A Uncharacterized protein 98.4 1.9E-06 6.5E-11 62.2 9.4 80 212-292 3-82 (115)
196 3n71_A Histone lysine methyltr 98.4 3.3E-06 1.1E-10 77.3 12.6 126 203-328 318-464 (490)
197 3n71_A Histone lysine methyltr 98.4 2.6E-06 8.9E-11 78.0 11.5 129 20-151 319-462 (490)
198 1klx_A Cysteine rich protein B 98.4 1.1E-05 3.6E-10 60.5 13.0 48 137-187 74-125 (138)
199 1klx_A Cysteine rich protein B 98.4 1E-05 3.5E-10 60.5 12.8 112 23-154 8-127 (138)
200 2l6j_A TPR repeat-containing p 98.3 4.5E-07 1.5E-11 64.9 4.7 90 229-320 4-99 (111)
201 2l6j_A TPR repeat-containing p 98.3 4.5E-07 1.6E-11 64.9 3.4 62 49-113 6-67 (111)
202 1na3_A Designed protein CTPR2; 98.2 2.2E-05 7.6E-10 53.5 11.5 80 230-311 10-89 (91)
203 2kat_A Uncharacterized protein 98.2 2.1E-05 7.2E-10 56.5 11.4 83 246-330 2-84 (115)
204 3ma5_A Tetratricopeptide repea 98.2 6.8E-06 2.3E-10 57.6 8.3 64 228-291 6-69 (100)
205 1na3_A Designed protein CTPR2; 98.2 1.1E-05 3.9E-10 55.0 8.9 64 48-114 10-73 (91)
206 1zu2_A Mitochondrial import re 98.2 3.8E-06 1.3E-10 63.4 6.3 94 59-163 14-128 (158)
207 1zu2_A Mitochondrial import re 98.1 1.1E-05 3.9E-10 60.7 7.8 89 208-300 16-125 (158)
208 3ma5_A Tetratricopeptide repea 98.0 9.1E-05 3.1E-09 51.7 10.6 70 259-330 3-72 (100)
209 3ly7_A Transcriptional activat 97.9 0.0002 6.8E-09 62.0 13.8 50 43-95 190-244 (372)
210 3qww_A SET and MYND domain-con 97.8 4.5E-06 1.5E-10 75.1 1.7 115 275-406 310-430 (433)
211 3qwp_A SET and MYND domain-con 97.8 1.2E-05 4.3E-10 72.4 3.7 121 269-406 293-419 (429)
212 2kc7_A BFR218_protein; tetratr 97.7 0.00016 5.6E-09 50.1 7.9 58 235-292 6-64 (99)
213 3qww_A SET and MYND domain-con 97.7 0.00016 5.3E-09 65.1 9.4 64 84-150 340-408 (433)
214 2kc7_A BFR218_protein; tetratr 97.6 0.00019 6.5E-09 49.7 7.2 57 55-114 8-65 (99)
215 3ly7_A Transcriptional activat 97.6 0.002 7E-08 55.7 14.6 49 81-135 191-244 (372)
216 3qwp_A SET and MYND domain-con 97.6 0.00031 1E-08 63.3 9.6 91 60-150 300-397 (429)
217 3bee_A Putative YFRE protein; 97.5 0.0023 7.8E-08 43.7 11.1 70 7-79 3-75 (93)
218 3bee_A Putative YFRE protein; 97.5 0.0034 1.1E-07 42.8 11.7 68 226-293 3-73 (93)
219 1pc2_A Mitochondria fission pr 97.2 0.0063 2.2E-07 45.3 11.4 80 212-292 16-100 (152)
220 3u64_A Protein TP_0956; tetrat 97.2 0.07 2.4E-06 44.4 19.0 81 210-292 179-269 (301)
221 1pc2_A Mitochondria fission pr 97.1 0.0091 3.1E-07 44.5 11.4 85 245-331 14-103 (152)
222 3mkq_A Coatomer beta'-subunit; 97.0 0.053 1.8E-06 53.2 19.8 191 55-318 607-802 (814)
223 3mkq_B Coatomer subunit alpha; 97.0 0.023 7.8E-07 43.4 13.0 129 18-185 13-141 (177)
224 2v5f_A Prolyl 4-hydroxylase su 97.0 0.012 4.1E-07 41.0 10.7 60 232-291 8-74 (104)
225 2v5f_A Prolyl 4-hydroxylase su 97.0 0.0065 2.2E-07 42.4 9.0 69 9-77 4-76 (104)
226 3mkq_A Coatomer beta'-subunit; 96.9 0.033 1.1E-06 54.7 17.0 157 131-326 606-763 (814)
227 3mkq_B Coatomer subunit alpha; 96.6 0.15 5.1E-06 39.0 16.7 102 132-254 13-114 (177)
228 4ady_A RPN2, 26S proteasome re 96.6 0.42 1.4E-05 46.8 21.0 266 56-329 383-659 (963)
229 4h7y_A Dual specificity protei 96.6 0.1 3.5E-06 38.4 12.8 113 157-271 11-136 (161)
230 1nzn_A CGI-135 protein, fissio 96.6 0.038 1.3E-06 39.5 10.5 82 210-292 17-103 (126)
231 3u64_A Protein TP_0956; tetrat 96.5 0.018 6.2E-07 47.8 9.9 95 63-163 179-281 (301)
232 1nzn_A CGI-135 protein, fissio 96.5 0.05 1.7E-06 38.9 10.7 87 242-330 14-105 (126)
233 1wy6_A Hypothetical protein ST 96.4 0.17 5.7E-06 36.5 14.5 142 170-333 18-159 (172)
234 4h7y_A Dual specificity protei 96.3 0.057 2E-06 39.7 10.2 104 8-117 11-127 (161)
235 4b4t_P 26S proteasome regulato 96.2 0.57 1.9E-05 42.2 18.5 53 61-113 30-85 (445)
236 3ffl_A Anaphase-promoting comp 95.9 0.073 2.5E-06 40.0 9.4 119 197-329 23-152 (167)
237 3txn_A 26S proteasome regulato 95.8 0.86 3E-05 40.1 19.3 133 48-186 20-166 (394)
238 3lvg_A Clathrin heavy chain 1; 95.7 2.6E-05 8.9E-10 69.0 -11.1 215 46-288 53-287 (624)
239 4b4t_P 26S proteasome regulato 95.7 1 3.4E-05 40.6 18.1 265 23-292 29-324 (445)
240 4ady_A RPN2, 26S proteasome re 95.5 2.2 7.5E-05 42.0 22.9 21 167-187 568-588 (963)
241 2ff4_A Probable regulatory pro 95.1 0.21 7E-06 44.2 11.2 81 231-311 173-257 (388)
242 4gns_B Protein CSD3, chitin bi 94.9 0.16 5.6E-06 48.7 10.5 124 199-326 253-398 (754)
243 3ffl_A Anaphase-promoting comp 94.8 0.27 9.2E-06 36.9 9.3 133 162-309 23-165 (167)
244 2ff4_A Probable regulatory pro 94.7 1.5 5E-05 38.8 15.6 68 128-196 175-247 (388)
245 4gns_B Protein CSD3, chitin bi 94.6 0.22 7.6E-06 47.7 10.6 52 238-289 346-397 (754)
246 3lvg_A Clathrin heavy chain 1; 94.5 0.00014 4.9E-09 64.4 -10.2 244 9-283 53-324 (624)
247 1qsa_A Protein (soluble lytic 94.5 3.3 0.00011 39.0 25.4 116 208-327 228-347 (618)
248 1zbp_A Hypothetical protein VP 94.5 0.6 2E-05 38.3 11.3 70 19-91 6-75 (273)
249 4fhn_B Nucleoporin NUP120; pro 94.2 1.3 4.5E-05 45.3 16.1 195 128-329 816-1051(1139)
250 1wy6_A Hypothetical protein ST 93.9 1.2 4.3E-05 32.1 17.3 140 58-226 18-157 (172)
251 4b4t_R RPN7, 26S proteasome re 93.7 0.7 2.4E-05 41.4 11.5 105 48-152 132-236 (429)
252 4b4t_R RPN7, 26S proteasome re 93.5 0.94 3.2E-05 40.6 12.2 101 12-113 133-237 (429)
253 4fhn_B Nucleoporin NUP120; pro 93.0 1.4 4.7E-05 45.1 13.7 53 15-74 817-869 (1139)
254 1v54_E Cytochrome C oxidase po 92.7 0.85 2.9E-05 30.8 7.6 43 215-257 31-73 (109)
255 3txn_A 26S proteasome regulato 92.4 5.4 0.00019 35.0 26.5 302 11-329 20-344 (394)
256 3o48_A Mitochondria fission 1 91.9 2.3 7.9E-05 30.6 9.8 67 226-292 37-107 (134)
257 3o48_A Mitochondria fission 1 89.2 4.7 0.00016 29.0 10.3 72 191-262 37-111 (134)
258 2y69_E Cytochrome C oxidase su 88.2 5.7 0.00019 28.6 9.6 54 215-268 74-127 (152)
259 1zbp_A Hypothetical protein VP 86.9 4.1 0.00014 33.4 8.9 54 203-257 6-59 (273)
260 3lpz_A GET4 (YOR164C homolog); 86.6 14 0.00048 31.5 18.4 25 123-147 135-159 (336)
261 1v54_E Cytochrome C oxidase po 86.4 5.8 0.0002 26.9 9.5 62 244-307 25-87 (109)
262 1y8m_A FIS1; mitochondria, unk 85.0 9.3 0.00032 27.8 13.0 67 226-292 36-106 (144)
263 3lpz_A GET4 (YOR164C homolog); 84.0 19 0.00065 30.7 22.2 131 127-275 38-179 (336)
264 1qsa_A Protein (soluble lytic 83.9 29 0.00098 32.7 29.5 153 173-328 228-410 (618)
265 2wpv_A GET4, UPF0363 protein Y 83.7 19 0.00065 30.4 17.8 25 123-147 133-157 (312)
266 2y69_E Cytochrome C oxidase su 83.6 10 0.00035 27.3 9.5 62 244-307 68-130 (152)
267 1y8m_A FIS1; mitochondria, unk 83.3 11 0.00038 27.4 12.4 67 192-258 37-106 (144)
268 2wpv_A GET4, UPF0363 protein Y 82.4 21 0.00073 30.1 21.2 26 228-253 133-158 (312)
269 2d2s_A Exocyst complex compone 73.1 33 0.0011 27.5 9.8 92 16-112 24-119 (235)
270 3esl_A Checkpoint serine/threo 69.9 37 0.0013 26.4 10.4 53 140-192 95-148 (202)
271 4b4t_S RPN3, 26S proteasome re 69.5 67 0.0023 29.3 12.1 68 194-261 231-302 (523)
272 1wdy_A 2-5A-dependent ribonucl 68.1 29 0.00098 28.2 9.0 52 14-71 6-60 (285)
273 3ltm_A Alpha-REP4; protein eng 65.6 44 0.0015 25.7 18.8 154 157-327 31-184 (211)
274 3ltm_A Alpha-REP4; protein eng 63.0 50 0.0017 25.4 18.6 167 126-312 35-201 (211)
275 1bpo_A Protein (clathrin); cla 60.5 31 0.0011 30.8 7.6 141 24-186 343-483 (494)
276 3esl_A Checkpoint serine/threo 59.2 61 0.0021 25.2 12.3 53 277-329 93-145 (202)
277 4a1g_A Mitotic checkpoint seri 56.7 57 0.0019 24.0 9.4 50 143-192 84-134 (152)
278 3bu8_A Telomeric repeat-bindin 55.7 73 0.0025 25.0 8.3 23 270-292 121-143 (235)
279 4b4t_S RPN3, 26S proteasome re 54.2 67 0.0023 29.3 8.9 25 12-36 233-257 (523)
280 2uwj_G Type III export protein 52.4 51 0.0018 22.3 6.8 11 135-145 50-60 (115)
281 2wvi_A Mitotic checkpoint seri 51.8 73 0.0025 23.8 10.3 51 143-193 79-130 (164)
282 2p58_C Putative type III secre 51.4 54 0.0018 22.2 7.7 14 134-147 50-63 (116)
283 2uwj_G Type III export protein 50.6 55 0.0019 22.1 7.3 11 170-180 50-60 (115)
284 4a1g_A Mitotic checkpoint seri 49.9 74 0.0025 23.4 9.9 50 178-227 84-134 (152)
285 2p58_C Putative type III secre 49.2 59 0.002 22.0 8.0 13 169-181 50-62 (116)
286 3bu8_A Telomeric repeat-bindin 49.1 79 0.0027 24.8 7.3 49 26-77 88-144 (235)
287 4gq2_M Nucleoporin NUP120; bet 47.7 2.2E+02 0.0075 28.5 12.4 89 235-327 816-925 (950)
288 4aez_C MAD3, mitotic spindle c 47.6 1E+02 0.0035 24.4 8.2 51 142-192 132-183 (223)
289 2d2s_A Exocyst complex compone 44.9 1.2E+02 0.004 24.3 11.5 90 200-291 24-119 (235)
290 2ion_A PDCD4, programmed cell 44.5 74 0.0025 23.4 6.6 23 233-255 13-35 (152)
291 2wvi_A Mitotic checkpoint seri 44.5 97 0.0033 23.2 10.1 51 178-228 79-130 (164)
292 1ya0_A SMG-7 transcript varian 44.1 1.9E+02 0.0063 26.3 11.2 75 16-96 158-232 (497)
293 2nsz_A Programmed cell death p 43.2 86 0.0029 22.2 7.9 24 233-256 11-34 (129)
294 4aez_C MAD3, mitotic spindle c 43.0 37 0.0013 26.9 4.9 54 101-158 131-184 (223)
295 2ijq_A Hypothetical protein; s 41.7 1.1E+02 0.0036 22.8 6.9 52 22-75 44-103 (161)
296 4gq2_M Nucleoporin NUP120; bet 39.8 3E+02 0.01 27.5 13.1 48 161-208 899-950 (950)
297 2r9g_A AAA ATPase, central reg 39.8 1.3E+02 0.0045 23.3 9.8 17 173-189 28-44 (204)
298 1ya0_A SMG-7 transcript varian 39.6 2.2E+02 0.0075 25.9 10.5 72 167-240 160-231 (497)
299 3eyy_A Putative iron uptake re 39.3 1.1E+02 0.0037 22.2 6.9 34 210-243 33-66 (145)
300 2ion_A PDCD4, programmed cell 38.3 1.2E+02 0.004 22.3 7.0 23 163-185 13-35 (152)
301 2b7e_A PRE-mRNA processing pro 38.1 62 0.0021 19.3 4.1 29 27-57 3-31 (59)
302 3bge_A Predicted ATPase; struc 37.8 1.4E+02 0.0048 23.1 8.1 18 173-190 21-38 (201)
303 1k1a_A B-cell lymphoma 3-encod 37.8 1.4E+02 0.0048 23.1 10.9 52 17-70 13-66 (241)
304 2fe3_A Peroxide operon regulat 37.4 1.1E+02 0.0039 22.0 8.0 57 186-243 14-70 (145)
305 2r9g_A AAA ATPase, central reg 37.2 1.4E+02 0.0049 23.1 10.2 77 199-276 16-101 (204)
306 2ijq_A Hypothetical protein; s 36.5 1.3E+02 0.0045 22.4 8.1 52 206-257 44-103 (161)
307 1wty_A Hypothetical protein TT 36.0 1.1E+02 0.0036 21.3 6.0 66 209-280 3-70 (119)
308 2w57_A Ferric uptake regulatio 34.7 1.3E+02 0.0045 21.9 7.2 59 185-244 8-67 (150)
309 1bpo_A Protein (clathrin); cla 34.5 2.6E+02 0.0088 25.2 10.5 86 194-280 361-446 (494)
310 3t5v_B Nuclear mRNA export pro 34.4 1.4E+02 0.0048 26.7 7.8 62 13-76 179-249 (455)
311 1mzb_A Ferric uptake regulatio 33.7 62 0.0021 23.1 4.6 45 53-99 23-68 (136)
312 1mzb_A Ferric uptake regulatio 33.6 1.3E+02 0.0044 21.4 7.3 58 185-243 9-67 (136)
313 2ko4_A Mediator of RNA polymer 32.5 64 0.0022 20.5 3.7 32 40-71 29-60 (81)
314 3ltj_A Alpharep-4; protein eng 31.7 1.6E+02 0.0056 22.1 19.5 92 192-291 88-179 (201)
315 2nsz_A Programmed cell death p 31.6 1.4E+02 0.0047 21.1 8.4 22 129-150 12-33 (129)
316 3ctd_A Putative ATPase, AAA fa 31.3 1.9E+02 0.0064 22.6 9.4 20 208-227 49-68 (213)
317 3t5v_B Nuclear mRNA export pro 31.1 2.6E+02 0.009 25.0 9.0 66 196-261 178-253 (455)
318 1oai_A Nuclear RNA export fact 31.0 45 0.0015 19.9 2.8 22 277-298 34-55 (59)
319 3ltj_A Alpharep-4; protein eng 30.7 1.7E+02 0.0059 22.0 19.3 17 228-244 151-167 (201)
320 4fke_A Aminopeptidase N; zinc 30.7 4.1E+02 0.014 26.4 17.9 90 54-153 693-787 (909)
321 3ygs_P Procaspase 9; apoptosis 30.4 1.1E+02 0.0039 20.2 5.2 38 98-144 51-88 (97)
322 1oyz_A Hypothetical protein YI 30.1 2.2E+02 0.0074 22.9 23.0 177 46-245 36-222 (280)
323 3ctd_A Putative ATPase, AAA fa 29.8 2E+02 0.0069 22.5 9.2 34 172-205 48-81 (213)
324 4ets_A Ferric uptake regulatio 29.6 92 0.0032 23.1 5.1 57 187-244 26-84 (162)
325 4ets_A Ferric uptake regulatio 29.2 1.5E+02 0.005 22.0 6.1 57 222-279 26-85 (162)
326 3ubw_A 14-3-3E, 14-3-3 protein 27.8 2.5E+02 0.0084 22.9 11.1 40 130-169 37-76 (261)
327 3pvs_A Replication-associated 27.6 3.3E+02 0.011 24.2 12.2 28 157-186 192-219 (447)
328 3bge_A Predicted ATPase; struc 26.2 2.3E+02 0.0078 21.9 9.1 18 137-154 20-37 (201)
329 2o03_A Probable zinc uptake re 25.8 1.1E+02 0.0037 21.6 4.8 37 171-207 22-58 (131)
330 2xig_A Ferric uptake regulatio 25.6 1.9E+02 0.0066 20.9 8.3 44 200-243 32-75 (150)
331 4b4t_O 26S proteasome regulato 25.3 3.4E+02 0.012 23.6 10.9 54 267-320 131-190 (393)
332 3l6a_A Eukaryotic translation 25.1 3E+02 0.01 23.7 8.1 148 159-313 12-165 (364)
333 1k1a_A B-cell lymphoma 3-encod 25.1 2.4E+02 0.0081 21.8 11.5 24 54-77 13-36 (241)
334 3bqo_A Telomeric repeat-bindin 24.7 1.3E+02 0.0046 23.2 5.0 25 90-114 123-147 (211)
335 2o03_A Probable zinc uptake re 24.6 1.5E+02 0.0053 20.8 5.4 45 200-244 16-60 (131)
336 3eiq_C Programmed cell death p 23.8 3.5E+02 0.012 23.3 14.1 73 231-304 219-293 (358)
337 3lxu_X Tripeptidyl-peptidase 2 23.4 4.7E+02 0.016 27.3 10.0 77 245-325 1265-1342(1354)
338 3uzd_A 14-3-3 protein gamma; s 23.1 3E+02 0.01 22.2 10.0 55 130-184 10-65 (248)
339 3jxi_A Vanilloid receptor-rela 22.9 1.6E+02 0.0054 23.3 5.9 57 16-74 8-73 (260)
340 3mwm_A ZUR, putative metal upt 22.7 1.4E+02 0.0048 21.3 4.9 42 202-243 21-62 (139)
341 1g1e_B SIN3A; four-helix bundl 22.7 1.7E+02 0.0056 19.2 4.7 30 245-274 10-39 (89)
342 3mwm_A ZUR, putative metal upt 22.7 99 0.0034 22.2 4.0 45 165-209 19-63 (139)
343 4fke_A Aminopeptidase N; zinc 22.3 5.8E+02 0.02 25.3 18.0 162 88-257 690-859 (909)
344 3eyy_A Putative iron uptake re 21.5 2.3E+02 0.0079 20.3 6.4 60 149-210 9-68 (145)
345 2f6m_A Suppressor protein STP2 21.5 1.5E+02 0.0051 18.1 4.5 25 200-224 8-32 (65)
346 2fu4_A Ferric uptake regulatio 21.0 1.6E+02 0.0055 18.4 6.9 33 211-243 34-66 (83)
347 1ug3_A EIF4GI, eukaryotic prot 20.9 1.6E+02 0.0054 25.1 5.6 27 126-152 13-39 (339)
348 3pvs_A Replication-associated 20.6 4.5E+02 0.015 23.3 12.7 38 206-243 267-304 (447)
349 3t8k_A Uncharacterized protein 20.5 2.7E+02 0.0093 20.8 8.4 66 91-158 42-108 (186)
350 3kea_A K1L; tropism, ANK repea 20.0 2.4E+02 0.0083 22.8 6.5 173 1-193 50-222 (285)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.1e-32 Score=258.82 Aligned_cols=346 Identities=9% Similarity=-0.014 Sum_probs=298.7
Q ss_pred CCCCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHH------------------------------
Q 015416 4 KGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSL------------------------------ 53 (407)
Q Consensus 4 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l------------------------------ 53 (407)
.|.+++..+|+.++.+|.+.|++++|+++|+++.+.. +.+...+..+
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 270 (597)
T 2xpi_A 194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD---AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAF 270 (597)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHH
T ss_pred cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHH
Confidence 3566789999999999999999999999999999862 2233443333
Q ss_pred --------HHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccc
Q 015416 54 --------MKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLG 125 (407)
Q Consensus 54 --------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (407)
+..|.+.|++++|+++|+++... +++..+|..++.+|.+.|++++|..+|+++.+.++. +..
T Consensus 271 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~ 340 (597)
T 2xpi_A 271 LRSLYMLKLNKTSHEDELRRAEDYLSSINGL----EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY------NLD 340 (597)
T ss_dssp HHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG----GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CCT
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHhhcC----CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc------cHH
Confidence 45566789999999999998764 568999999999999999999999999999987654 667
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACF 205 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 205 (407)
++..++.+|.+.|++++|..+|+++.... +.+..+|+.++.+|.+.|++++|..+|+++.+.. +.+..+|+.++.+|.
T Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 418 (597)
T 2xpi_A 341 VYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFA 418 (597)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 89999999999999999999999998754 5678899999999999999999999999998742 346889999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015416 206 EVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEI 285 (407)
Q Consensus 206 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 285 (407)
+.|++++|.++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+..+.++.+|..++.+|.+.|++++|+++
T Consensus 419 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 497 (597)
T 2xpi_A 419 IEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINH 497 (597)
T ss_dssp HHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999999999864 457889999999999999999999999999997788999999999999999999999999
Q ss_pred HHHHHhcC---CCCCc--HHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcC
Q 015416 286 VGGILDDG---GIEFS--EELQEFVKGELSKEGREEEVVKLMEKKEREKAEAKAREAEAAEAAKRSARAAIASLIPSKFG 360 (407)
Q Consensus 286 ~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 360 (407)
|+++.+.. +..|+ ..++..++.+|.+.|++++|.+.++++.+.. |.....+..++..+.
T Consensus 498 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------------p~~~~~~~~l~~~~~ 561 (597)
T 2xpi_A 498 FQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS----------------TNDANVHTAIALVYL 561 (597)
T ss_dssp HHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----------------SCCHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----------------CCChHHHHHHHHHHH
Confidence 99998752 34566 6799999999999999999999999987654 334566677777777
Q ss_pred CCccccccccccChhhHhhHHHHhcCcccc
Q 015416 361 DKVGGTEMADNANANEAASVAEAQAGKEVN 390 (407)
Q Consensus 361 ~~~~~~~~~~~~~~~ea~~~~~~~~~~~~~ 390 (407)
..+ ++++|+...+.+.....+
T Consensus 562 ~~g---------~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 562 HKK---------IPGLAITHLHESLAISPN 582 (597)
T ss_dssp HTT---------CHHHHHHHHHHHHHHCTT
T ss_pred HhC---------CHHHHHHHHHHHHhcCCC
Confidence 788 999999999888776544
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.4e-31 Score=251.23 Aligned_cols=303 Identities=8% Similarity=0.013 Sum_probs=272.4
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHH
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANN 88 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
...+|+.++..|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|++++|+.+|+++...+ +.+..++.
T Consensus 271 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~ 343 (597)
T 2xpi_A 271 LRSLYMLKLNKTSHEDELRRAEDYLSSINGL----EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID---PYNLDVYP 343 (597)
T ss_dssp HHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG----GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCCTTHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHhhcC----CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC---cccHHHHH
Confidence 4445666788888999999999999998873 5799999999999999999999999999999877 44788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 015416 89 SVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQ 168 (407)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 168 (407)
.++.+|.+.|++++|..+|+++.+..+. +..+++.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 416 (597)
T 2xpi_A 344 LHLASLHESGEKNKLYLISNDLVDRHPE------KAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHS 416 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTT------SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCcc------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 9999999999999999999999976543 67789999999999999999999999998864 4578899999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 015416 169 LCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEA 248 (407)
Q Consensus 169 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 248 (407)
|.+.|++++|+.+|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|
T Consensus 417 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 494 (597)
T 2xpi_A 417 FAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTA 494 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999999864 4578899999999999999999999999999864 45788999999999999999999
Q ss_pred HHHHHHHHhc-----CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHH
Q 015416 249 KSFFDIMVKK-----LKMD--DASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKL 321 (407)
Q Consensus 249 ~~~~~~~~~~-----~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 321 (407)
..+|+++.+. ..|+ ..+|..++.+|.+.|++++|+++|+++.+.. +.+...|..++.+|.+.|++++|.+.
T Consensus 495 ~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~ 572 (597)
T 2xpi_A 495 INHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--TNDANVHTAIALVYLHKKIPGLAITH 572 (597)
T ss_dssp HHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999872 2555 7899999999999999999999999999874 66888999999999999999999999
Q ss_pred HHHHHHhh
Q 015416 322 MEKKEREK 329 (407)
Q Consensus 322 ~~~~~~~~ 329 (407)
++++.+..
T Consensus 573 ~~~~l~~~ 580 (597)
T 2xpi_A 573 LHESLAIS 580 (597)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 99987755
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=7e-29 Score=224.35 Aligned_cols=339 Identities=15% Similarity=0.064 Sum_probs=288.1
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHH
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANN 88 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
+...+..+...+...|++++|...++...+. .|.+..+|..++.++.+.|++++|+..|++++..+ |.+..+|.
T Consensus 32 ~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~ 105 (388)
T 1w3b_A 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ---NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK---PDFIDGYI 105 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC---cchHHHHH
Confidence 4556677788888999999999999998885 45678899999999999999999999999999876 44677889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 015416 89 SVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQ 168 (407)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 168 (407)
.++.++...|++++|.+.|+++.+..+. +...+..+...+...|++++|.+.|+++.... |.+..+|..++..
T Consensus 106 ~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 178 (388)
T 1w3b_A 106 NLAAALVAAGDMEGAVQAYVSALQYNPD------LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCV 178 (388)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHCTT------CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 9999999999999999999999887654 55678889999999999999999999998864 4567889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 015416 169 LCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEA 248 (407)
Q Consensus 169 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 248 (407)
+...|++++|+..|+++.+.+ +.+...+..+...+...|++++|...|+++.+.. +.+..++..++..|...|++++|
T Consensus 179 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 256 (388)
T 1w3b_A 179 FNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLA 256 (388)
T ss_dssp HHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998753 3357788889999999999999999999998753 34577899999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh
Q 015416 249 KSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 328 (407)
...|+++....|.++.++..++.++.+.|++++|+..|+++++.. +.+...+..++.++.+.|++++|...++++.+.
T Consensus 257 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 257 IDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp HHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999999999777788899999999999999999999999999873 677888999999999999999999999988764
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccccccccccChhhHhhHHHHhcCccc
Q 015416 329 KAEAKAREAEAAEAAKRSARAAIASLIPSKFGDKVGGTEMADNANANEAASVAEAQAGKEV 389 (407)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~~~~~ 389 (407)
. |.....+..++..+...+ ++++|+...+.+.....
T Consensus 335 ~----------------p~~~~~~~~l~~~~~~~g---------~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 335 F----------------PEFAAAHSNLASVLQQQG---------KLQEALMHYKEAIRISP 370 (388)
T ss_dssp C----------------TTCHHHHHHHHHHHHTTT---------CCHHHHHHHHHHHTTCT
T ss_pred C----------------CCcHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHhhCC
Confidence 3 334445666666777777 89999999988876644
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.5e-30 Score=239.89 Aligned_cols=196 Identities=15% Similarity=0.182 Sum_probs=159.8
Q ss_pred CcCCCCcCHH-HHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCC---------HHHHHHHHH
Q 015416 2 FVKGFVADPV-VYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGM---------EEEAMECYN 71 (407)
Q Consensus 2 ~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~A~~~~~ 71 (407)
.+++..+++. .++.+|.+|++.|++++|+++|++|.+. |+.||..+|+.||.+|++.+. ++.|.++|+
T Consensus 17 ~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~--Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~ 94 (501)
T 4g26_A 17 KKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRN--GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFK 94 (501)
T ss_dssp -------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHH
T ss_pred HHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHH
Confidence 3455555443 4778888888888888888888888888 888888888888888876654 678888888
Q ss_pred HHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 015416 72 EAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMG 151 (407)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 151 (407)
+|...+ +.||..+|+.++.+|++.|++++|.++|++|.+.|..| +..+|+.+|.+|++.|++++|.++|++|.
T Consensus 95 ~M~~~G--~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-----d~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 95 QMIVDK--VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-----RLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHTT--CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----ccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 888887 78888888888888888888888888888888888777 77888888888888888888888888888
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015416 152 EYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFE 206 (407)
Q Consensus 152 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 206 (407)
+.|+.||..+|+.|+.+|++.|++++|.++|++|.+.|..|+..||+.++..|..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 8888888888888888888888888888888888888888888888888887765
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=2e-30 Score=239.01 Aligned_cols=207 Identities=17% Similarity=0.212 Sum_probs=180.6
Q ss_pred hhHHHHHHHHHHhhCCccCCc-chHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCC------
Q 015416 27 DGVFRLFEELKEKLGGVVSDG-VVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGK------ 99 (407)
Q Consensus 27 ~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 99 (407)
..+..+.+.+.++ +..+.+ ..++.+|.+|++.|++++|+++|++|...| +.||..+|+.||.+|++.+.
T Consensus 7 s~~e~L~~~~~~k--~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~G--v~pd~~tyn~Li~~c~~~~~~~~~~~ 82 (501)
T 4g26_A 7 SPSENLSRKAKKK--AIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNG--VQLSQYHYNVLLYVCSLAEAATESSP 82 (501)
T ss_dssp -------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--CCCCHHHHHHHHHHHTTCCCCSSSSC
T ss_pred chHHHHHHHHHHh--cccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHhCCchhhhhh
Confidence 3455666677766 555444 358889999999999999999999999998 99999999999999987665
Q ss_pred ---HHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH
Q 015416 100 ---FDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLA 176 (407)
Q Consensus 100 ---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 176 (407)
++.|.++|++|...|..| |..+|++|+.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++
T Consensus 83 ~~~l~~A~~lf~~M~~~G~~P-----d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~ 157 (501)
T 4g26_A 83 NPGLSRGFDIFKQMIVDKVVP-----NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDAD 157 (501)
T ss_dssp CHHHHHHHHHHHHHHHTTCCC-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cchHHHHHHHHHHHHHhCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHH
Confidence 688999999999999888 889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 015416 177 EAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQV 242 (407)
Q Consensus 177 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 242 (407)
+|.++|++|.+.|+.||..||+.|+.+|++.|++++|.+++++|.+.+..|+..||+.++..|+..
T Consensus 158 ~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 158 KAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999998763
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=3.1e-28 Score=220.08 Aligned_cols=306 Identities=15% Similarity=0.114 Sum_probs=276.1
Q ss_pred CcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhh
Q 015416 7 VADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVA 86 (407)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (407)
+.+..+|..+...|.+.|++++|+..|+++.+. .|.+..+|..++.++...|++++|+..|+++++.+ |.+...
T Consensus 64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~ 137 (388)
T 1w3b_A 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL---KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN---PDLYCV 137 (388)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC---TTCTHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHH
Confidence 457788999999999999999999999999986 34466789999999999999999999999999876 446678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015416 87 NNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLI 166 (407)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 166 (407)
+..+..++...|++++|.+.|+++.+..+. +..+|..++.+|...|++++|+..|+++...+ +.+...|..+.
T Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 210 (388)
T 1w3b_A 138 RSDLGNLLKALGRLEEAKACYLKAIETQPN------FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLG 210 (388)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 888999999999999999999999987654 66789999999999999999999999999875 55678899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 015416 167 DQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLD 246 (407)
Q Consensus 167 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 246 (407)
..+...|++++|+..|+++.... +.+..++..++.+|...|++++|...|+++.+.. +.+..+|..++..+.+.|+++
T Consensus 211 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 288 (388)
T 1w3b_A 211 NVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVA 288 (388)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998753 3357889999999999999999999999999854 446779999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015416 247 EAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 247 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 326 (407)
+|...|+++....|.+..++..++.++...|++++|+..|+++++.. |.+...+..++.+|.+.|++++|...++++.
T Consensus 289 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 366 (388)
T 1w3b_A 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999888899999999999999999999999999999863 6678899999999999999999999999998
Q ss_pred Hhh
Q 015416 327 REK 329 (407)
Q Consensus 327 ~~~ 329 (407)
+..
T Consensus 367 ~~~ 369 (388)
T 1w3b_A 367 RIS 369 (388)
T ss_dssp TTC
T ss_pred hhC
Confidence 654
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=1.5e-25 Score=206.51 Aligned_cols=306 Identities=14% Similarity=0.094 Sum_probs=266.4
Q ss_pred CcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhh
Q 015416 7 VADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVA 86 (407)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (407)
+.+...+..+...+.+.|++++|+.+|+.+.+. .+.+..+|..++.++...|++++|+..|+++++.+ +.+..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~ 96 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDG---DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK---MDFTAA 96 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCcHHH
Confidence 345677899999999999999999999999985 45678999999999999999999999999999987 456889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccccc---chHHHH------------HHHHHhcCCHHHHHHHHHHHh
Q 015416 87 NNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL---GSFNVM------------ADGYCGQGRFKDAIEVFRKMG 151 (407)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~A~~~~~~~~ 151 (407)
+..++.+|...|++++|...|+++.+..+. +. .++..+ +..+...|++++|+.+|+++.
T Consensus 97 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 170 (450)
T 2y4t_A 97 RLQRGHLLLKQGKLDEAEDDFKKVLKSNPS------ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL 170 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999999987644 33 455544 555999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 015416 152 EYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAV 231 (407)
Q Consensus 152 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 231 (407)
... +.+...+..++.+|...|++++|+.+|+++.+.. +.+..++..++.+|...|++++|...|+++.+.. +.+...
T Consensus 171 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~ 247 (450)
T 2y4t_A 171 EVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRC 247 (450)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHH
Confidence 865 5678899999999999999999999999998753 4468899999999999999999999999999753 334555
Q ss_pred HHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 015416 232 YNRL------------VGKLVQVGMLDEAKSFFDIMVKKLKMD----DASYKFMMKALSDGGKLDEILEIVGGILDDGGI 295 (407)
Q Consensus 232 ~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 295 (407)
+..+ +..|...|++++|..+|+++....|.+ ...+..++.++.+.|++++|+..++++....
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-- 325 (450)
T 2y4t_A 248 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-- 325 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--
Confidence 5555 889999999999999999999855555 3478899999999999999999999999863
Q ss_pred CCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 296 EFSEELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 296 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
+.+...+..++.+|...|++++|...++++.+..
T Consensus 326 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 326 PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 5678899999999999999999999999998654
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=7e-25 Score=202.00 Aligned_cols=324 Identities=13% Similarity=0.050 Sum_probs=259.6
Q ss_pred hhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 015416 27 DGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKL 106 (407)
Q Consensus 27 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 106 (407)
..+...+..+... .|.++..+..++..+.+.|++++|+.+|++++... +.+..+|..++.+|...|++++|...
T Consensus 9 ~~~~~~~~~~~~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~ 82 (450)
T 2y4t_A 9 SGVDLGTENLYFQ---SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD---PDNYIAYYRRATVFLAMGKSKAALPD 82 (450)
T ss_dssp -----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccccccccccccc---cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3444555555553 45678899999999999999999999999999876 55788999999999999999999999
Q ss_pred HHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH---HHHHHH------------HHHHHH
Q 015416 107 FDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDT---LSFNNL------------IDQLCK 171 (407)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~ 171 (407)
|+++.+.++. +..++..++.+|.+.|++++|...|+++.... +.+. ..+..+ +..+..
T Consensus 83 ~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 155 (450)
T 2y4t_A 83 LTKVIQLKMD------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFG 155 (450)
T ss_dssp HHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998654 66789999999999999999999999999865 3334 555555 445889
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015416 172 NGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSF 251 (407)
Q Consensus 172 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 251 (407)
.|++++|+..|+++.+.. +.+...+..++.+|...|++++|..+|+++.+.. +.+..++..++..|...|++++|...
T Consensus 156 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 233 (450)
T 2y4t_A 156 SGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSE 233 (450)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998753 4468889999999999999999999999999753 45788999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCCCc--HHHHHHHHHHHhhcCcHHH
Q 015416 252 FDIMVKKLKMDDASYKFM------------MKALSDGGKLDEILEIVGGILDDGGIEFS--EELQEFVKGELSKEGREEE 317 (407)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~ 317 (407)
|+++....|.+...+..+ +..|...|++++|+.+|++++......+. ...+..++.++.+.|++++
T Consensus 234 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 234 VRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 999998777777777666 88999999999999999999986321111 4478889999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccccccccccChhhHhhHHHHhcCcccc
Q 015416 318 VVKLMEKKEREKAEAKAREAEAAEAAKRSARAAIASLIPSKFGDKVGGTEMADNANANEAASVAEAQAGKEVN 390 (407)
Q Consensus 318 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~~~~~~ 390 (407)
|...++++.... |.....+..++..+...+ ++++|+...+.+......
T Consensus 314 A~~~~~~a~~~~----------------p~~~~~~~~l~~~~~~~~---------~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 314 AIRVCSEVLQME----------------PDNVNALKDRAEAYLIEE---------MYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp HHHHHHHHHHHC----------------TTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHhC----------------cccHHHHHHHHHHHHHhc---------CHHHHHHHHHHHHHhCcc
Confidence 999999987543 233344555566655666 778888887777665443
No 9
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.95 E-value=3.1e-23 Score=184.83 Aligned_cols=308 Identities=13% Similarity=0.076 Sum_probs=263.4
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHH
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANN 88 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
|+..+..+...+...|++++|+..|+.+.+. .|.++.++..++.++...|++++|+..|++++... +.+...+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~ 75 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG---DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK---MDFTAARL 75 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCcchHHH
Confidence 4667888999999999999999999999996 45578899999999999999999999999999876 44678899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHH------------HHHHHhcCCHHHHHHHHHHHhhCCCC
Q 015416 89 SVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVM------------ADGYCGQGRFKDAIEVFRKMGEYRCS 156 (407)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~ 156 (407)
.++.++...|++++|...|+++.+..+.... +...+..+ +..+...|++++|+.+|+++.... +
T Consensus 76 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~ 151 (359)
T 3ieg_A 76 QRGHLLLKQGKLDEAEDDFKKVLKSNPSEQE---EKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-V 151 (359)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTSCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCcccC---hHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-C
Confidence 9999999999999999999999987651000 44455544 688999999999999999998865 5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH---
Q 015416 157 PDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYN--- 233 (407)
Q Consensus 157 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--- 233 (407)
.+...+..++..+...|++++|...++++.+.. +.+..++..+...|...|++++|...++++.+.. +.+...+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (359)
T 3ieg_A 152 WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYK 229 (359)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHH
Confidence 678899999999999999999999999999863 4568899999999999999999999999999753 33444333
Q ss_pred ---------HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHH
Q 015416 234 ---------RLVGKLVQVGMLDEAKSFFDIMVKKLKMDDA----SYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEE 300 (407)
Q Consensus 234 ---------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 300 (407)
.++..+...|++++|...++++....+.+.. .+..++.++...|++++|+..|+++.+.. +.+..
T Consensus 230 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~ 307 (359)
T 3ieg_A 230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME--PDNVN 307 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccHH
Confidence 3367799999999999999999996666553 35668889999999999999999999873 66788
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHHhhH
Q 015416 301 LQEFVKGELSKEGREEEVVKLMEKKEREKA 330 (407)
Q Consensus 301 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 330 (407)
.+..++.+|.+.|++++|...++++.+..+
T Consensus 308 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 308 ALKDRAEAYLIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999987553
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2e-24 Score=202.36 Aligned_cols=361 Identities=14% Similarity=0.027 Sum_probs=285.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHH
Q 015416 10 PVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNS 89 (407)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (407)
...|..+...+.+.|++++|+..|+++.+. . |++.+|..++.++...|++++|+..|+++++.+ |.+..+|..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~ 78 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALEL--K--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK---PDYSKVLLR 78 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc--C--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC---hHHHHHHHH
Confidence 456778889999999999999999999996 3 688999999999999999999999999999887 557789999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc-------------------------------------------------
Q 015416 90 VLDALCNNGKFDEALKLFDRMKNEHNPPKRL------------------------------------------------- 120 (407)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------------------------------------------------- 120 (407)
++.+|...|++++|...|+++....+.....
T Consensus 79 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (514)
T 2gw1_A 79 RASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCC
Confidence 9999999999999999999998776421100
Q ss_pred ------------------------ccccchHHHHHHHHHh---cCCHHHHHHHHHHHhh-----CCC--------CCCHH
Q 015416 121 ------------------------AVNLGSFNVMADGYCG---QGRFKDAIEVFRKMGE-----YRC--------SPDTL 160 (407)
Q Consensus 121 ------------------------~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----~~~--------~~~~~ 160 (407)
..+...+..+...+.. .|++++|+.+|+++.. ... +.+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (514)
T 2gw1_A 159 PSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238 (514)
T ss_dssp CCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHH
T ss_pred chhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHH
Confidence 0012233444444444 8999999999999887 311 12345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015416 161 SFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240 (407)
Q Consensus 161 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 240 (407)
.+..++..+...|++++|..+|+++.+.. |+...+..++.+|...|++++|...++++.+.. +.+..++..++..|.
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHH
Confidence 78888899999999999999999998753 347888889999999999999999999998753 446678889999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHH
Q 015416 241 QVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVK 320 (407)
Q Consensus 241 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 320 (407)
..|++++|...|+++....+.+..++..++.++...|++++|+.+|+++.... +.+...+..++.++.+.|++++|..
T Consensus 316 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999998777788899999999999999999999999998863 5566788888999999999999999
Q ss_pred HHHHHHHh---------------------------hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccccccccccC
Q 015416 321 LMEKKERE---------------------------KAEAKAREAEAAEAAKRSARAAIASLIPSKFGDKVGGTEMADNAN 373 (407)
Q Consensus 321 ~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 373 (407)
.++++... +....+...........|.....+..++.++...+ +
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g---------~ 464 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQE---------D 464 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---------C
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc---------C
Confidence 99887643 22233333444444445555566667777777777 8
Q ss_pred hhhHhhHHHHhcCcccch
Q 015416 374 ANEAASVAEAQAGKEVNL 391 (407)
Q Consensus 374 ~~ea~~~~~~~~~~~~~~ 391 (407)
+.+|+...+.+.......
T Consensus 465 ~~~A~~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 465 IDEAITLFEESADLARTM 482 (514)
T ss_dssp HHHHHHHHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 888888887777665543
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=1.1e-23 Score=198.50 Aligned_cols=368 Identities=14% Similarity=0.065 Sum_probs=290.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHH
Q 015416 10 PVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNS 89 (407)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (407)
...|..+...+.+.|++++|+..|+++.+. .|.++.+|..++.+|...|++++|+..|++++..+ +.+..++..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~ 98 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL---DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK---PDHSKALLR 98 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh---CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CchHHHHHH
Confidence 456788899999999999999999999996 45588999999999999999999999999999987 557889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCccc--------------------------------cc--------------
Q 015416 90 VLDALCNNGKFDEALKLFDRMKNEHNPPKRLA--------------------------------VN-------------- 123 (407)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--------------------------------~~-------------- 123 (407)
++.++...|++++|...|+ .....+.+.... ++
T Consensus 99 la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 99 RASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 9999999999999999996 443322211100 00
Q ss_pred -------------cc---hHHHHHHHHHh--------cCCHHHHHHHHHHHhhCCCCCCH-------HHHHHHHHHHHHc
Q 015416 124 -------------LG---SFNVMADGYCG--------QGRFKDAIEVFRKMGEYRCSPDT-------LSFNNLIDQLCKN 172 (407)
Q Consensus 124 -------------~~---~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~ 172 (407)
.. ....+...+.. .|++++|..+|+++.+.. +.+. .++..+...+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhc
Confidence 00 11222222222 247899999999998865 3332 3577777888999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015416 173 GMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFF 252 (407)
Q Consensus 173 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 252 (407)
|++++|...|+++.+. .|+...+..+...|...|++++|...++++.+.. +.+..++..++..+...|++++|...|
T Consensus 257 ~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 257 NNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999999984 5668889999999999999999999999999754 456789999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh----
Q 015416 253 DIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKERE---- 328 (407)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 328 (407)
+++....+.+..++..++.++...|++++|+.+|+++.... +.+...+..++.++.+.|++++|...++++...
T Consensus 334 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 334 QKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 99999777788999999999999999999999999999874 666778889999999999999999999997643
Q ss_pred ------------------------------hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccccccccccChhhHh
Q 015416 329 ------------------------------KAEAKAREAEAAEAAKRSARAAIASLIPSKFGDKVGGTEMADNANANEAA 378 (407)
Q Consensus 329 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ea~ 378 (407)
+....+...........|.....+..++..+...+ ++++|+
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g---------~~~~A~ 482 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQME---------KIDEAI 482 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---------CHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---------cHHHHH
Confidence 33344455555556666777778888888888888 899999
Q ss_pred hHHHHhcCcccchhhhhhhhh
Q 015416 379 SVAEAQAGKEVNLEEATAVES 399 (407)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~ 399 (407)
...+.+........+.....+
T Consensus 483 ~~~~~al~~~~~~~~~~~~~~ 503 (537)
T 3fp2_A 483 ELFEDSAILARTMDEKLQATT 503 (537)
T ss_dssp HHHHHHHHHC--CHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHh
Confidence 999888887666555544443
No 12
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.94 E-value=2.8e-23 Score=183.00 Aligned_cols=296 Identities=10% Similarity=0.025 Sum_probs=253.9
Q ss_pred CCCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCch
Q 015416 5 GFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSA 84 (407)
Q Consensus 5 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 84 (407)
+++.+...+..+...+...|++++|+.+|+++.+. .+.+...+..++.++...|++++|+.++++++... +.+.
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~ 90 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK---DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY---PSNP 90 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTST
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC---cCCH
Confidence 45567777888999999999999999999999986 45577888889999999999999999999999876 4567
Q ss_pred hhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 015416 85 VANNSVLDALCNNG-KFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFN 163 (407)
Q Consensus 85 ~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 163 (407)
.+|..+..++...| ++++|...|+++.+..+. +..++..++.+|...|++++|+..|+++.... +.+...+.
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 163 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT------YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPML 163 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT------CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHH
Confidence 88999999999999 999999999999987654 56689999999999999999999999998865 45567788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--------CCCCHHHHHHH
Q 015416 164 NLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSG--------LRPNLAVYNRL 235 (407)
Q Consensus 164 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~l 235 (407)
.++..|...|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+.. .+....++..+
T Consensus 164 ~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 242 (330)
T 3hym_B 164 YIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNL 242 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHH
Confidence 89999999999999999999999863 4467889999999999999999999999988631 13345789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH-hhcCc
Q 015416 236 VGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGEL-SKEGR 314 (407)
Q Consensus 236 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~ 314 (407)
+..|...|++++|...++++....+.+..++..++.++...|++++|...|+++++.. +.+...+..++.++ ...|+
T Consensus 243 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 243 GHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR--RDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC--SCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC--CCchHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999777889999999999999999999999999998863 56777888888888 45565
Q ss_pred HH
Q 015416 315 EE 316 (407)
Q Consensus 315 ~~ 316 (407)
.+
T Consensus 321 ~~ 322 (330)
T 3hym_B 321 SE 322 (330)
T ss_dssp --
T ss_pred hh
Confidence 54
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=2.4e-22 Score=178.97 Aligned_cols=307 Identities=12% Similarity=0.043 Sum_probs=258.0
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccc
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLG 125 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (407)
++..+..++..+...|++++|+..|++++..+ +.+..++..++.++...|++++|...|+++.+..+. +..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~ 72 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD---PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD------FTA 72 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------cch
Confidence 45678889999999999999999999999886 557889999999999999999999999999988654 567
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhCCC
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCS---PDTLSFNNL------------IDQLCKNGMLAEAEELYGEMSDKGV 190 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~ 190 (407)
++..++.+|...|++++|...|+++.+.. + .+...+..+ +..+...|++++|+.+++++.+..
T Consensus 73 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~- 150 (359)
T 3ieg_A 73 ARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC- 150 (359)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-
Confidence 89999999999999999999999999864 2 244455544 578899999999999999998753
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH--
Q 015416 191 NPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKF-- 268 (407)
Q Consensus 191 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-- 268 (407)
+.+...+..+..++...|++++|...++++.+.. +.+..++..++..+...|++++|...|+++....+.+..++..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (359)
T 3ieg_A 151 VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK 229 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 4468889999999999999999999999999863 5578899999999999999999999999999977777665543
Q ss_pred ----------HHHHHHhcCCHHHHHHHHHHHHhcCCCCCcH----HHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHHHHH
Q 015416 269 ----------MMKALSDGGKLDEILEIVGGILDDGGIEFSE----ELQEFVKGELSKEGREEEVVKLMEKKEREKAEAKA 334 (407)
Q Consensus 269 ----------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 334 (407)
++..+...|++++|+..++++.... +.+. ..+..++.++.+.|++++|...+++.....
T Consensus 230 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----- 302 (359)
T 3ieg_A 230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME----- 302 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----
Confidence 3677999999999999999999874 3333 235567889999999999999999987653
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcCCCccccccccccChhhHhhHHHHhcCcccch
Q 015416 335 REAEAAEAAKRSARAAIASLIPSKFGDKVGGTEMADNANANEAASVAEAQAGKEVNL 391 (407)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~~~~~~~ 391 (407)
|.....+..++..+...+ ++++|+...+.+.....+.
T Consensus 303 -----------~~~~~~~~~~~~~~~~~g---------~~~~A~~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 303 -----------PDNVNALKDRAEAYLIEE---------MYDEAIQDYEAAQEHNEND 339 (359)
T ss_dssp -----------TTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHTTCTTC
T ss_pred -----------cccHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHhcCCCC
Confidence 334456666777777777 8999999998888776543
No 14
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.1e-22 Score=186.57 Aligned_cols=316 Identities=15% Similarity=0.031 Sum_probs=256.1
Q ss_pred CcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC------
Q 015416 7 VADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSV------ 80 (407)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------ 80 (407)
.|+..+|..+..+|.+.|++++|+..|+.+.+. .|.+..+|..++.++...|++++|+..|+++...++..
T Consensus 36 ~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 112 (514)
T 2gw1_A 36 KEDPVFYSNLSACYVSVGDLKKVVEMSTKALEL---KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEP 112 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHH
T ss_pred CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc---ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHH
Confidence 478999999999999999999999999999996 35577899999999999999999999999998776311
Q ss_pred ----------------------------------------------------------------------CCchhhHHHH
Q 015416 81 ----------------------------------------------------------------------KMSAVANNSV 90 (407)
Q Consensus 81 ----------------------------------------------------------------------~~~~~~~~~l 90 (407)
+.+...+...
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (514)
T 2gw1_A 113 MLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMN 192 (514)
T ss_dssp HHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHH
Confidence 0113333344
Q ss_pred HHHHHh---cCCHHHHHHHHHHHHh-----cCCCCCcc---ccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 015416 91 LDALCN---NGKFDEALKLFDRMKN-----EHNPPKRL---AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDT 159 (407)
Q Consensus 91 ~~~~~~---~~~~~~A~~~~~~~~~-----~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 159 (407)
...+.. .|++++|...|+++.+ ....|... ..+..++..++.++...|++++|...|+++.... |+.
T Consensus 193 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~ 270 (514)
T 2gw1_A 193 GLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRV 270 (514)
T ss_dssp HHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCH
T ss_pred HHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccH
Confidence 444444 8999999999999988 42222211 1145678889999999999999999999998865 447
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 015416 160 LSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKL 239 (407)
Q Consensus 160 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 239 (407)
..+..++.++...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.+.. +.+..++..++..|
T Consensus 271 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 348 (514)
T 2gw1_A 271 NSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLA 348 (514)
T ss_dssp HHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHH
Confidence 788889999999999999999999998753 3457788889999999999999999999998754 34567888899999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----HHHHHHHHHHHhh---c
Q 015416 240 VQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFS----EELQEFVKGELSK---E 312 (407)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~---~ 312 (407)
...|++++|..+++++....+.+..++..++.++...|++++|+..|+++.....-.+. ...+..++.++.+ .
T Consensus 349 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 428 (514)
T 2gw1_A 349 YRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV 428 (514)
T ss_dssp TTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCT
T ss_pred HHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhc
Confidence 99999999999999998877778888999999999999999999999988875321222 3378888888988 9
Q ss_pred CcHHHHHHHHHHHHHhh
Q 015416 313 GREEEVVKLMEKKEREK 329 (407)
Q Consensus 313 g~~~~A~~~~~~~~~~~ 329 (407)
|++++|...++++....
T Consensus 429 ~~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 429 ENFIEATNLLEKASKLD 445 (514)
T ss_dssp THHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999887543
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.92 E-value=5.1e-22 Score=174.88 Aligned_cols=274 Identities=12% Similarity=-0.007 Sum_probs=241.1
Q ss_pred CccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccc
Q 015416 42 GVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLA 121 (407)
Q Consensus 42 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 121 (407)
+.+.+...+..++..+...|++++|+.+|++++..+ +.+...+..++.++...|++++|...++++.+..+.
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----- 88 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD---PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS----- 88 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-----
Confidence 456688899999999999999999999999999887 456677888889999999999999999999987654
Q ss_pred cccchHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 015416 122 VNLGSFNVMADGYCGQG-RFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLL 200 (407)
Q Consensus 122 ~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 200 (407)
+..++..+...+...| ++++|...|+++.... +.+...|..++..+...|++++|+..|+++.+.. +.+...+..+
T Consensus 89 -~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 165 (330)
T 3hym_B 89 -NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYI 165 (330)
T ss_dssp -STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHH
T ss_pred -CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHH
Confidence 6678999999999999 9999999999999875 5567889999999999999999999999998753 3346677789
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------CCCHHHHHHHHH
Q 015416 201 MDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKL---------KMDDASYKFMMK 271 (407)
Q Consensus 201 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~ 271 (407)
...|...|++++|...++++.+.. +.+..++..++..+...|++++|...++++.... +....++..++.
T Consensus 166 ~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~ 244 (330)
T 3hym_B 166 GLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence 999999999999999999999864 4567899999999999999999999999998832 455689999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 272 ALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 272 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
++...|++++|+..|+++.+.. +.+...+..++.++.+.|++++|...++++.+..
T Consensus 245 ~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 245 VCRKLKKYAEALDYHRQALVLI--PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHHhcCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 9999999999999999999874 5677889999999999999999999999987654
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.92 E-value=5.4e-23 Score=184.18 Aligned_cols=294 Identities=14% Similarity=0.025 Sum_probs=237.5
Q ss_pred HHhcCChhhHHH-HHHHHHHhhCCccC-CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhc
Q 015416 20 FVRDGDSDGVFR-LFEELKEKLGGVVS-DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNN 97 (407)
Q Consensus 20 ~~~~g~~~~A~~-~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 97 (407)
+...|++++|++ .|++.....+..+. +...+..++..+...|++++|+.+|+++++.+ +.+..++..++.++...
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD---PKHMEAWQYLGTTQAEN 111 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC---TTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHC
Confidence 445678888888 88766554222211 46779999999999999999999999999987 55788999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH-------------
Q 015416 98 GKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNN------------- 164 (407)
Q Consensus 98 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------------- 164 (407)
|++++|...|+++.+..+. +..++..++.+|...|++++|+..|+++.... +.+...+..
T Consensus 112 g~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 184 (368)
T 1fch_A 112 EQELLAISALRRCLELKPD------NQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPS 184 (368)
T ss_dssp TCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC--------------
T ss_pred cCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHH
Confidence 9999999999999988654 66789999999999999999999999998865 233333321
Q ss_pred --HHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 015416 165 --LIDQLCKNGMLAEAEELYGEMSDKGVN-PDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQ 241 (407)
Q Consensus 165 --l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 241 (407)
.+..+...|++++|...|+++.+.... ++..++..++..|...|++++|...|+++.+.. +.+..++..++..+..
T Consensus 185 ~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 263 (368)
T 1fch_A 185 KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLAN 263 (368)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 233344899999999999999875322 147889999999999999999999999999753 4467899999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-----------HHHHHHHHHHHh
Q 015416 242 VGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFS-----------EELQEFVKGELS 310 (407)
Q Consensus 242 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~ 310 (407)
.|++++|...|+++....|.+..++..++.+|...|++++|+..|++++... +.+ ...+..++.+|.
T Consensus 264 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (368)
T 1fch_A 264 GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ--RKSRGPRGEGGAMSENIWSTLRLALS 341 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HTC------CCCCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCCCccccccchhhHHHHHHHHHHH
Confidence 9999999999999999778889999999999999999999999999998753 222 678999999999
Q ss_pred hcCcHHHHHHHHHHHH
Q 015416 311 KEGREEEVVKLMEKKE 326 (407)
Q Consensus 311 ~~g~~~~A~~~~~~~~ 326 (407)
..|++++|..++++..
T Consensus 342 ~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 342 MLGQSDAYGAADARDL 357 (368)
T ss_dssp HHTCGGGHHHHHTTCH
T ss_pred HhCChHhHHHhHHHHH
Confidence 9999999999887543
No 17
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.90 E-value=4.9e-22 Score=177.83 Aligned_cols=267 Identities=14% Similarity=0.009 Sum_probs=222.4
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccc
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLG 125 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (407)
+...|..++..+.+.|++++|+.+|++++... +.+..+|..++.+|...|++++|+..|+++.+..+. +..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~ 134 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD---PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN------NLK 134 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------CHH
Confidence 45669999999999999999999999999887 557889999999999999999999999999987654 667
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD-----------TLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVN-PD 193 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~ 193 (407)
++..++.+|...|++++|+..|+++.+.. |+ ...+..++..+...|++++|+.+|+++.+.... ++
T Consensus 135 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 212 (365)
T 4eqf_A 135 ALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID 212 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC
Confidence 89999999999999999999999998753 32 223345688899999999999999999875322 15
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 015416 194 EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKAL 273 (407)
Q Consensus 194 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 273 (407)
..++..++..|...|++++|...|+++.+.. +.+..+|..++.+|...|++++|...|+++....|.+..++..++.+|
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC 291 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 8899999999999999999999999999853 456889999999999999999999999999998788899999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC----------CCcHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 015416 274 SDGGKLDEILEIVGGILDDGGI----------EFSEELQEFVKGELSKEGREEEVVKLMEK 324 (407)
Q Consensus 274 ~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 324 (407)
...|++++|+..|++++....- ..+...+..+..++...|+.+.+....++
T Consensus 292 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 292 INLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999999875311 01357888999999999999988877654
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.90 E-value=2.7e-21 Score=173.13 Aligned_cols=272 Identities=13% Similarity=0.032 Sum_probs=229.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHH
Q 015416 10 PVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNS 89 (407)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (407)
...+..+...+.+.|++++|+..|+++.+. .|.+..+|..++.++...|++++|+..|++++..+ +.+..++..
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~ 137 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ---DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK---PDNQTALMA 137 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHS---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC---CCCHHHHHH
Confidence 456788999999999999999999999985 45678899999999999999999999999999887 557889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccc----------cchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--
Q 015416 90 VLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN----------LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSP-- 157 (407)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-- 157 (407)
++.+|...|++++|...|+++....+........ ...+..+...+ ..|++++|+.+|+++.... +.
T Consensus 138 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~-p~~~ 215 (368)
T 1fch_A 138 LAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLD-PTSI 215 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHS-TTSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhC-cCcc
Confidence 9999999999999999999999876553211000 00001233344 8999999999999998865 23
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 015416 158 DTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVG 237 (407)
Q Consensus 158 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 237 (407)
+..++..++..|...|++++|+..|+++.+.. +.+..++..++.+|...|++++|...|+++.+.. +.+..++..++.
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~ 293 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGI 293 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 57899999999999999999999999998753 3457899999999999999999999999999853 456789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 238 KLVQVGMLDEAKSFFDIMVKKLKMD-----------DASYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 238 ~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
+|...|++++|...|+++....|.+ ..+|..++.+|...|++++|..++.+.+.
T Consensus 294 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 294 SCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 9999999999999999998843333 78999999999999999999999875543
No 19
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=3e-20 Score=174.91 Aligned_cols=309 Identities=14% Similarity=0.078 Sum_probs=231.6
Q ss_pred CcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC------
Q 015416 7 VADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSV------ 80 (407)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------ 80 (407)
+.++.+|..+...|.+.|++++|++.|+++.+. .|.+..++..++.++...|++++|+..|+ .....|+.
T Consensus 56 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~ 131 (537)
T 3fp2_A 56 PNEPVFYSNISACYISTGDLEKVIEFTTKALEI---KPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIE 131 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHH
Confidence 346788999999999999999999999999986 34578889999999999999999988774 32211110
Q ss_pred --------------------------------------------------------------------------------
Q 015416 81 -------------------------------------------------------------------------------- 80 (407)
Q Consensus 81 -------------------------------------------------------------------------------- 80 (407)
T Consensus 132 ~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 211 (537)
T 3fp2_A 132 PMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGY 211 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhh
Confidence
Q ss_pred --------------------CC-c-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHH
Q 015416 81 --------------------KM-S-------AVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMAD 132 (407)
Q Consensus 81 --------------------~~-~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (407)
.| + ..++..+...+...|++++|...|+++.+..+ +..++..+..
T Consensus 212 ~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~l~~ 284 (537)
T 3fp2_A 212 LVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP-------TPNSYIFLAL 284 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC-------CchHHHHHHH
Confidence 01 1 12345555667777888888888888877643 2346777888
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 015416 133 GYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDD 212 (407)
Q Consensus 133 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 212 (407)
+|...|++++|+..|+++.... +.+..+|..++..+...|++++|...|+++.+.. +.+...+..+..+|...|++++
T Consensus 285 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 362 (537)
T 3fp2_A 285 TLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTE 362 (537)
T ss_dssp HTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888887764 4567788888888888888888888888887643 2346677788888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHhc----------
Q 015416 213 GATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKM------DDASYKFMMKALSDG---------- 276 (407)
Q Consensus 213 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~---------- 276 (407)
|..+++++.+.. +.+..++..++..+...|++++|...|+++....+. ....+.....++...
T Consensus 363 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 441 (537)
T 3fp2_A 363 SEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDE 441 (537)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhH
Confidence 888888888753 445667888888888888888888888888762111 222345556667777
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHH
Q 015416 277 GKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAE 331 (407)
Q Consensus 277 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 331 (407)
|++++|+..|+++.... +.+...+..++.+|.+.|++++|...++++....+.
T Consensus 442 ~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 442 EKFNAAIKLLTKACELD--PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 88888888888888863 566778888999999999999999999998875543
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.90 E-value=1.7e-21 Score=174.38 Aligned_cols=273 Identities=13% Similarity=0.021 Sum_probs=224.4
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHH
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANN 88 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
+...|..+...+.+.|++++|+.+|+++.+. .|.+..+|..++.++...|++++|+..|++++..+ +.+..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~ 137 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ---DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ---PNNLKALM 137 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHH
Confidence 4455888999999999999999999999996 45578899999999999999999999999999886 45688999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccc----cccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--CHHHH
Q 015416 89 SVLDALCNNGKFDEALKLFDRMKNEHNPPKRLA----VNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSP--DTLSF 162 (407)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~ 162 (407)
.++.+|...|++++|...|+++.+..+...... .....+..+..+|...|++++|+.+|+++.... +. +..++
T Consensus 138 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 216 (365)
T 4eqf_A 138 ALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQ 216 (365)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHH
Confidence 999999999999999999999998754311000 012233456889999999999999999999875 33 68899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 015416 163 NNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQV 242 (407)
Q Consensus 163 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 242 (407)
..++..|...|++++|+..|+++.+.. +.+..++..++.+|...|++++|...|+++.+.. +.+..++..++.+|...
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHC
Confidence 999999999999999999999998853 4468899999999999999999999999999853 44588999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015416 243 GMLDEAKSFFDIMVKKLKM------------DDASYKFMMKALSDGGKLDEILEIVGGIL 290 (407)
Q Consensus 243 g~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 290 (407)
|++++|...|+++....|. +..+|..+..++...|+.+.+..+..+..
T Consensus 295 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp TCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 9999999999999882211 36789999999999999999988877643
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.89 E-value=4.1e-21 Score=168.81 Aligned_cols=279 Identities=13% Similarity=-0.017 Sum_probs=157.3
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHH
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANN 88 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
+...+..+...+...|++++|+.+|+++.+. .+.+..+|..++.++...|++++|+..|+++.... +.+..++.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~ 93 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA---APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD---PKDIAVHA 93 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---cCCHHHHH
Confidence 3445667778888888888888888888885 34477788888888888888888888888888876 44677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH-
Q 015416 89 SVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLID- 167 (407)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~- 167 (407)
.++.++...|++++|.+.|+++.+..+. +...+..+...+ |+......+..
T Consensus 94 ~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~----------------------~~~~~~~~~~~~ 145 (327)
T 3cv0_A 94 ALAVSHTNEHNANAALASLRAWLLSQPQ------YEQLGSVNLQAD----------------------VDIDDLNVQSED 145 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSTT------TTTC------------------------------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCc------cHHHHHHHhHHH----------------------HHHHHHHHHHHh
Confidence 8888888888888888888888876544 222333320000 00001111111
Q ss_pred -HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 015416 168 -QLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLD 246 (407)
Q Consensus 168 -~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 246 (407)
.+...|++++|..+++++.+.. +.+...+..++..|...|++++|...++++.+.. +.+..++..++..+...|+++
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 223 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQ 223 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHH
Confidence 1333444444444444444321 1234444444444445555555555555444432 223445555555555555555
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC------------cHHHHHHHHHHHhhcCc
Q 015416 247 EAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEF------------SEELQEFVKGELSKEGR 314 (407)
Q Consensus 247 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~ 314 (407)
+|...|+++....+.+..++..++.+|...|++++|.+.|+++.... +. ....+..++.++.+.|+
T Consensus 224 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (327)
T 3cv0_A 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ--VGGTTPTGEASREATRSMWDFFRMLLNVMNR 301 (327)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence 55555555555444445555555555555555555555555554431 11 24455555555555555
Q ss_pred HHHHHHHHHHH
Q 015416 315 EEEVVKLMEKK 325 (407)
Q Consensus 315 ~~~A~~~~~~~ 325 (407)
+++|..++++.
T Consensus 302 ~~~A~~~~~~~ 312 (327)
T 3cv0_A 302 PDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.89 E-value=4.5e-21 Score=168.56 Aligned_cols=251 Identities=11% Similarity=-0.036 Sum_probs=178.8
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccc
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLG 125 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (407)
+...+..++..+...|++++|+.+|+++.... +.+..++..++.++...|++++|...|+++.+..+. +..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~ 90 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA---PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK------DIA 90 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC------CHH
Confidence 44556666667777777777777777776655 335566666666777777777777777776665433 444
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HH-H
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLL-MD-A 203 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l-~~-~ 203 (407)
++..++.+|...|++++|...++++.... +.+...+..+... .|+......+ .. .
T Consensus 91 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~ 147 (327)
T 3cv0_A 91 VHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFF 147 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHH
Confidence 56666666666666666666666666543 1122122111100 0111111222 22 3
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015416 204 CFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEIL 283 (407)
Q Consensus 204 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 283 (407)
+...|++++|..+++++.+.. +.+..++..++..|...|++++|...++++....+.+..++..++.++...|++++|+
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 778899999999999999764 4478899999999999999999999999999987888999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHH
Q 015416 284 EIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAE 331 (407)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 331 (407)
..|+++.... +.+...+..++.+|.+.|++++|...++++....+.
T Consensus 227 ~~~~~a~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 227 DAYNRALDIN--PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 9999999873 567788999999999999999999999998765544
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.88 E-value=5.4e-20 Score=158.61 Aligned_cols=276 Identities=14% Similarity=0.076 Sum_probs=211.6
Q ss_pred HHHHHhcCChhhHHHHHHHHHHhhCCccCC--cchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHH
Q 015416 17 MLGFVRDGDSDGVFRLFEELKEKLGGVVSD--GVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDAL 94 (407)
Q Consensus 17 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (407)
++.....|+++.|+..++.+... .|+ ......+.++|...|+++.|+..++. . -+|+..++..+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~----~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~---~~~~~~a~~~la~~~ 75 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS----SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S---SAPELQAVRMFAEYL 75 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC----SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T---SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccC----CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c---CChhHHHHHHHHHHH
Confidence 35566789999999988776542 222 34556778899999999999986644 2 256778888888899
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 015416 95 CNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGM 174 (407)
Q Consensus 95 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 174 (407)
...++.++|++.++++...+..|+ +...+..+..+|...|++++|++.+++ +.+...+..++..+.+.|+
T Consensus 76 ~~~~~~~~A~~~l~~ll~~~~~P~----~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~ 145 (291)
T 3mkr_A 76 ASHSRRDAIVAELDREMSRSVDVT----NTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDR 145 (291)
T ss_dssp HCSTTHHHHHHHHHHHHHSCCCCS----CHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTC
T ss_pred cCCCcHHHHHHHHHHHHhcccCCC----CHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCC
Confidence 999999999999999887764444 556778888999999999999999887 4678888999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015416 175 LAEAEELYGEMSDKGVNPDEYTY---GLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSF 251 (407)
Q Consensus 175 ~~~a~~~~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 251 (407)
+++|...|+++.+. .|+.... ..++..+...|++++|..+|+++.+. .+.+...++.++.++...|++++|...
T Consensus 146 ~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~ 222 (291)
T 3mkr_A 146 LDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGV 222 (291)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999875 3553211 12233444558899999999999876 366788899999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHH
Q 015416 252 FDIMVKKLKMDDASYKFMMKALSDGGKLDE-ILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKL 321 (407)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 321 (407)
|+++....|.++.++..++..+...|+.++ +.++++++++.. |.++.+ .+...+.+.++++..-
T Consensus 223 l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~~----~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 223 LQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPFI----KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChHH----HHHHHHHHHHHHHHHH
Confidence 999998888889999999999999999876 568888888863 333322 2334555566665543
No 24
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.86 E-value=4.7e-19 Score=164.10 Aligned_cols=362 Identities=10% Similarity=-0.005 Sum_probs=256.3
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhC---C---ccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLG---G---VVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENS--- 78 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--- 78 (407)
.....||.|...+...|++++|++.|++..+..+ + .+....+|+.++.+|...|++++|+..|+++....+
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 3456799999999999999999999998765311 1 122356789999999999999999999998875321
Q ss_pred --CCCCchhhHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHH---HHhcCCHHHHHHHHHHHh
Q 015416 79 --SVKMSAVANNSVLDALCNN--GKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADG---YCGQGRFKDAIEVFRKMG 151 (407)
Q Consensus 79 --~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~ 151 (407)
.......++..+..++... +++++|+..|+++++..|. ++..+..+..+ +...++.++|++.|++.+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~------~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al 202 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK------NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAI 202 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 1122345666666666554 5799999999999988654 45556555555 445678889999999988
Q ss_pred hCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 015416 152 EYRCSPDTLSFNNLIDQLCK----NGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRP 227 (407)
Q Consensus 152 ~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 227 (407)
+.. +.+...+..+...+.. .|++++|..++++..... +.+...+..+...|...|++++|...++++.+.. +.
T Consensus 203 ~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~ 279 (472)
T 4g1t_A 203 RLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PN 279 (472)
T ss_dssp HHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT
T ss_pred hcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CC
Confidence 865 4566777777666554 467889999999998753 4467889999999999999999999999999853 44
Q ss_pred CHHHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015416 228 NLAVYNRLVGKLVQV-------------------GMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGG 288 (407)
Q Consensus 228 ~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 288 (407)
+..++..++.+|... +.++.|...+++.....+.+..++..++..|...|++++|+..|++
T Consensus 280 ~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~k 359 (472)
T 4g1t_A 280 NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQK 359 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHH
Confidence 566788887776432 3467788888888887778888999999999999999999999999
Q ss_pred HHhcCCCCCcHH--HHHHHHH-HHhhcCcHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 015416 289 ILDDGGIEFSEE--LQEFVKG-ELSKEGREEEVVKLMEKKEREK--------AEAKAREAEAAEAAKRSARAAIASLIPS 357 (407)
Q Consensus 289 ~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 357 (407)
++... ..+... .+..++. .+...|++++|+..+++..+.. .......+.+.....+|.....+..||.
T Consensus 360 aL~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~ 438 (472)
T 4g1t_A 360 EFSKE-LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAF 438 (472)
T ss_dssp HHHSC-CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHH
T ss_pred HHhcC-CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99863 122211 2333333 3457899999999999887532 2223333444455667777778888999
Q ss_pred CcCCCccccccccccChhhHhhHHHHhcCcc
Q 015416 358 KFGDKVGGTEMADNANANEAASVAEAQAGKE 388 (407)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~ea~~~~~~~~~~~ 388 (407)
++...| ++++|+...+++.+..
T Consensus 439 ~~~~~g---------~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 439 LQELNE---------KMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHH---------HCC-------------
T ss_pred HHHHcC---------CHHHHHHHHHHHHhcC
Confidence 988888 8888988888776543
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.85 E-value=2.6e-18 Score=148.11 Aligned_cols=256 Identities=11% Similarity=0.058 Sum_probs=209.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHH
Q 015416 54 MKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADG 133 (407)
Q Consensus 54 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 133 (407)
++-....|+++.|+..+++.....| .........+.++|...|+++.|+..++. . .| ++..++..+...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p--~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~--~~----~~~~a~~~la~~ 74 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSP--ERDVERDVFLYRAYLAQRKYGVVLDEIKP---S--SA----PELQAVRMFAEY 74 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSH--HHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T--SC----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCc--hhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c--CC----hhHHHHHHHHHH
Confidence 3455678999999999988765431 11134556778999999999999986644 1 11 166788889999
Q ss_pred HHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 015416 134 YCGQGRFKDAIEVFRKMGEYRC-SPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDD 212 (407)
Q Consensus 134 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 212 (407)
+...|+.++|++.++++...+. |.+...+..++.++...|++++|+..+++ +.+...+..++..|.+.|++++
T Consensus 75 ~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~ 148 (291)
T 3mkr_A 75 LASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDL 148 (291)
T ss_dssp HHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHH
T ss_pred HcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999987764 44667788888999999999999999987 4578899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 213 GATYFRKMVDSGLRPNLAVY---NRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGI 289 (407)
Q Consensus 213 a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 289 (407)
|.+.|+++.+.. |+.... ..++..+...|++++|..+|+++.+..|.++..++.++.++.+.|++++|...|+++
T Consensus 149 A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 149 ARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999853 543211 223344455689999999999999988899999999999999999999999999999
Q ss_pred HhcCCCCCcHHHHHHHHHHHhhcCcHHH-HHHHHHHHHHhhH
Q 015416 290 LDDGGIEFSEELQEFVKGELSKEGREEE-VVKLMEKKEREKA 330 (407)
Q Consensus 290 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~ 330 (407)
+... |.+..++..++.++...|+.++ +.++++++.+..+
T Consensus 227 l~~~--p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 227 LDKD--SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred HHhC--CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 9974 6678889999999999999976 5788888876543
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=7.4e-17 Score=150.04 Aligned_cols=288 Identities=15% Similarity=0.111 Sum_probs=227.6
Q ss_pred CHHHHHHHHHHHHh----cCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCC
Q 015416 9 DPVVYSYLMLGFVR----DGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFM----KGMEEEAMECYNEAVGENSSV 80 (407)
Q Consensus 9 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~ 80 (407)
++..+..|...|.. .+++++|+..|++..+. + ++..+..|...|.. .+++++|+.+|+++...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--G---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 56667777777877 78999999999988875 4 67788888888888 889999999999988765
Q ss_pred CCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHh----cCCHHHHHHHHHHHhh
Q 015416 81 KMSAVANNSVLDALCN----NGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCG----QGRFKDAIEVFRKMGE 152 (407)
Q Consensus 81 ~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 152 (407)
+...+..|...|.. .+++++|+..|++..+.+ +..++..|..+|.. .+++++|+++|++..+
T Consensus 110 --~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~ 179 (490)
T 2xm6_A 110 --LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG--------RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE 179 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 56677778888887 788999999999888765 45577888888887 7889999999998887
Q ss_pred CCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCC
Q 015416 153 YRCSPDTLSFNNLIDQLCK----NGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFE----VNRVDDGATYFRKMVDSG 224 (407)
Q Consensus 153 ~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 224 (407)
.| +...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|..+|++..+.+
T Consensus 180 ~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 253 (490)
T 2xm6_A 180 QG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG 253 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT
T ss_pred CC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 64 67788888888887 788999999998888754 56677777777776 788888888888888754
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCC
Q 015416 225 LRPNLAVYNRLVGKLVQ----VGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDG-----GKLDEILEIVGGILDDGGI 295 (407)
Q Consensus 225 ~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~ 295 (407)
+...+..+...|.. .+++++|..+|++..+. .++..+..+...|... +++++|+.+|+++.+.
T Consensus 254 ---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--- 325 (490)
T 2xm6_A 254 ---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--- 325 (490)
T ss_dssp ---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT---
T ss_pred ---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc---
Confidence 55677778888877 78888888888888763 3566777788888776 8888888888888775
Q ss_pred CCcHHHHHHHHHHHhhcC---cHHHHHHHHHHHHHhh
Q 015416 296 EFSEELQEFVKGELSKEG---REEEVVKLMEKKEREK 329 (407)
Q Consensus 296 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 329 (407)
.+...+..++..|.+.| +.++|.+++++..+.+
T Consensus 326 -~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~ 361 (490)
T 2xm6_A 326 -GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG 361 (490)
T ss_dssp -TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT
T ss_pred -CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC
Confidence 23456666777777656 7788888888876543
No 27
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=7.1e-17 Score=150.13 Aligned_cols=288 Identities=15% Similarity=0.090 Sum_probs=249.0
Q ss_pred CHHHHHHHHHHHHh----cCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCC
Q 015416 9 DPVVYSYLMLGFVR----DGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFM----KGMEEEAMECYNEAVGENSSV 80 (407)
Q Consensus 9 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~ 80 (407)
++..+..|...|.. .+++++|..+|++..+. + ++..+..|...|.. .+++++|+.+|+++...+
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 145 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--G---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG--- 145 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 56677888888988 89999999999999885 4 67888899999998 899999999999999876
Q ss_pred CCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHh----cCCHHHHHHHHHHHhh
Q 015416 81 KMSAVANNSVLDALCN----NGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCG----QGRFKDAIEVFRKMGE 152 (407)
Q Consensus 81 ~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 152 (407)
+...+..+..+|.. .+++++|++.|++..+.+ +..++..|...|.. .+++++|..+|++..+
T Consensus 146 --~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~--------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 215 (490)
T 2xm6_A 146 --RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG--------NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT 215 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence 56778888888887 789999999999998875 56688899999988 8999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCC
Q 015416 153 YRCSPDTLSFNNLIDQLCK----NGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFE----VNRVDDGATYFRKMVDSG 224 (407)
Q Consensus 153 ~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 224 (407)
.+ +...+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .+++++|..+|++..+.+
T Consensus 216 ~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~ 289 (490)
T 2xm6_A 216 SG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG 289 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC
Confidence 65 67788888888887 889999999999998764 56677788888888 899999999999998754
Q ss_pred CCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCC
Q 015416 225 LRPNLAVYNRLVGKLVQV-----GMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGG---KLDEILEIVGGILDDGGIE 296 (407)
Q Consensus 225 ~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~ 296 (407)
+...+..|...|... +++++|..+|++..+. .+...+..+...|...| ++++|+++|+++.+.
T Consensus 290 ---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---- 360 (490)
T 2xm6_A 290 ---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---- 360 (490)
T ss_dssp ---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----
T ss_pred ---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----
Confidence 567888899999887 8999999999999873 35678888999888866 889999999999885
Q ss_pred CcHHHHHHHHHHHhh----cCcHHHHHHHHHHHHHhh
Q 015416 297 FSEELQEFVKGELSK----EGREEEVVKLMEKKEREK 329 (407)
Q Consensus 297 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 329 (407)
.+...+..++..|.. .+++++|..++++..+.+
T Consensus 361 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 361 GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 356778888999988 899999999999987765
No 28
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.82 E-value=1.4e-17 Score=142.35 Aligned_cols=243 Identities=11% Similarity=0.076 Sum_probs=112.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHH
Q 015416 13 YSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLD 92 (407)
Q Consensus 13 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (407)
+......+...|++++|+..|+++.+. .|.+..++..++.++...|++++|+..|++++...++......+|..++.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAK---KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHT---TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 334445555555555555555555553 22344455555555555555555555555555522111111223455555
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 015416 93 ALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKN 172 (407)
Q Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 172 (407)
++...|++++|+..|+++.+..+. +..++..++.+|...|++++|+..|++..+.. +.+...|..+...+...
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 155 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTT------RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYN 155 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT------CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHT
T ss_pred HHHHcccHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHH
Confidence 555555555555555555554332 33455555555555555555555555555442 33344444444222233
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhc
Q 015416 173 GMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNR---VDDGATYFRKMVDSG-LRPN------LAVYNRLVGKLVQV 242 (407)
Q Consensus 173 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~ 242 (407)
+++++|...|+++.+.. +.+...+..+..++...|+ +++|...++++.+.. -.|+ ..+|..++..|...
T Consensus 156 ~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 156 KEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc
Confidence 35555555555554421 1123444444444444444 444444444444310 0011 12344444444444
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHH
Q 015416 243 GMLDEAKSFFDIMVKKLKMDDASY 266 (407)
Q Consensus 243 g~~~~A~~~~~~~~~~~~~~~~~~ 266 (407)
|++++|...|+++.+..|.+...+
T Consensus 235 ~~~~~A~~~~~~al~~~p~~~~a~ 258 (272)
T 3u4t_A 235 RDKVKADAAWKNILALDPTNKKAI 258 (272)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCHHHHHHHHHHHHhcCccHHHHH
Confidence 444444444444444333333333
No 29
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.82 E-value=2e-18 Score=142.37 Aligned_cols=210 Identities=15% Similarity=0.074 Sum_probs=115.1
Q ss_pred cCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccc
Q 015416 44 VSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123 (407)
Q Consensus 44 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 123 (407)
|+++..+..++..+.+.|++++|+..|+++++.+ |.+...+..+..++...|++++|+..|+++++..|. +
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~------~ 72 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN---PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR------Y 72 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------C
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------c
Confidence 5677788888888888888888888888888876 456778888888888888888888888888887654 5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015416 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDA 203 (407)
Q Consensus 124 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 203 (407)
..++..+..+|...+. .. .. .+...|++++|+..|++.++.. +-+...+..+..+
T Consensus 73 ~~a~~~lg~~~~~~~~------------~~---~~---------~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~ 127 (217)
T 2pl2_A 73 LGGYMVLSEAYVALYR------------QA---ED---------RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLV 127 (217)
T ss_dssp HHHHHHHHHHHHHHHH------------TC---SS---------HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhh------------hh---hh---------hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 5677777777776610 00 00 0112244444444444444321 1123344444444
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015416 204 CFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEIL 283 (407)
Q Consensus 204 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 283 (407)
|...|++++|+..|+++++.. .+...+..++.+|...|++++|...|+++....|.+...+..+..++...|++++|+
T Consensus 128 ~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~ 205 (217)
T 2pl2_A 128 YALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAA 205 (217)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------
T ss_pred HHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHH
Confidence 444444444544444444433 344444455555555555555555555555444444555555555555555555555
Q ss_pred HHHHHH
Q 015416 284 EIVGGI 289 (407)
Q Consensus 284 ~~~~~~ 289 (407)
..|++.
T Consensus 206 ~~~~~~ 211 (217)
T 2pl2_A 206 RAAALE 211 (217)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 555443
No 30
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.82 E-value=7e-18 Score=142.79 Aligned_cols=227 Identities=13% Similarity=0.091 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCc----hh
Q 015416 10 PVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMS----AV 85 (407)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~ 85 (407)
...|..+...+...|++++|+..|+++.+. . .+..+|..++.++...|++++|+..|++++...|...++ ..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~--~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWEL--H--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--S--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--h--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 345666777777777777777777777775 3 566777777777777777777777777776644221111 35
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 015416 86 ANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNL 165 (407)
Q Consensus 86 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 165 (407)
++..++.++...|++++|...|+++.+..+. ...+...|++++|...++++.... +.+...+..+
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ 145 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLE 145 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHH
Confidence 5666666666666666666666666654321 123444455555555555555432 2233344455
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 015416 166 IDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGML 245 (407)
Q Consensus 166 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 245 (407)
+..+...|++++|+..|+++.+.. +.+...+..+..+|...|++++|...++++.+.. +.+..++..++.++...|++
T Consensus 146 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~ 223 (258)
T 3uq3_A 146 GKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEY 223 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhH
Confidence 555555555555555555554421 2234444444444444444444444444444321 22233444444444444444
Q ss_pred HHHHHHHHHHHh
Q 015416 246 DEAKSFFDIMVK 257 (407)
Q Consensus 246 ~~A~~~~~~~~~ 257 (407)
++|...|+++.+
T Consensus 224 ~~A~~~~~~a~~ 235 (258)
T 3uq3_A 224 ASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 31
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.82 E-value=3.5e-18 Score=140.87 Aligned_cols=198 Identities=14% Similarity=0.085 Sum_probs=142.9
Q ss_pred ccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015416 123 NLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMD 202 (407)
Q Consensus 123 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 202 (407)
+...+..+...+.+.|++++|+..|++.++.. |.+...+..+..++.+.|++++|+..|+++++.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 44456666666666666666666666666654 4455666666666666666666666666666532 223556666666
Q ss_pred HHHhc-----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 015416 203 ACFEV-----------NRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMK 271 (407)
Q Consensus 203 ~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 271 (407)
++... |++++|+..|++.++.. +.+...+..++.+|...|++++|+..|+++.+.. .++..+..++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHH
Confidence 66666 99999999999999853 3467799999999999999999999999999966 88999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015416 272 ALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 272 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 326 (407)
+|...|++++|+..|+++++.. |.+...+..++.++.+.|++++|...+++..
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999974 6677889999999999999999999998764
No 32
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.82 E-value=2e-17 Score=141.32 Aligned_cols=254 Identities=13% Similarity=0.045 Sum_probs=198.3
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccc
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLG 125 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (407)
|+..+...+..+...|++++|+..|+++++.+ +.+..++..++.+|...|++++|+..|+++.+....+. ....
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~ 75 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKK---YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATK---AKSA 75 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTT---CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTT---CCHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchh---HHHH
Confidence 45567788899999999999999999999887 44666888999999999999999999999988432221 1233
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACF 205 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 205 (407)
+|..++.+|...|++++|+..|++..+.. +.+...|..++..|...|++++|+..|+++.+.. +.+...+..+...+.
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 153 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYY 153 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHH
Confidence 58889999999999999999999998865 4567889999999999999999999999998752 335677777773444
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhc--CCCC------HHHHHHHHHHHH
Q 015416 206 EVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM---LDEAKSFFDIMVKK--LKMD------DASYKFMMKALS 274 (407)
Q Consensus 206 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~--~~~~------~~~~~~l~~~~~ 274 (407)
..+++++|...|+++.+.. +.+...+..++..+...|+ +++|...++++... ..|+ ..++..++..|.
T Consensus 154 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 154 YNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 5569999999999999753 3457788888888888888 88899999888872 2222 257888889999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHh
Q 015416 275 DGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELS 310 (407)
Q Consensus 275 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 310 (407)
..|++++|+..|+++++.+ |.+......+.....
T Consensus 233 ~~~~~~~A~~~~~~al~~~--p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 233 INRDKVKADAAWKNILALD--PTNKKAIDGLKMKLE 266 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHC----
T ss_pred HcCCHHHHHHHHHHHHhcC--ccHHHHHHHhhhhhc
Confidence 9999999999999999874 555656665554443
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.81 E-value=8.5e-18 Score=142.27 Aligned_cols=231 Identities=15% Similarity=0.096 Sum_probs=151.3
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-ccccccc
Q 015416 47 GVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPK-RLAVNLG 125 (407)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~ 125 (407)
...|..++..+...|++++|+.+|+++++.. .+..++..++.++...|++++|...|+++.+..+... .......
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH----KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 4567777778888888888888888877654 3566777777788888888888888887776543210 0000145
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACF 205 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 205 (407)
++..++.+|...|++++|+..|++..... |+. ..+...|++++|...++++.... +.+...+..++..+.
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHH
Confidence 66777777777777777777777777643 442 23445566777777777766632 223455666666666
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015416 206 EVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEI 285 (407)
Q Consensus 206 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 285 (407)
..|++++|...|+++.+.. +.+..++..++..|...|++++|...|+++....|.+..++..++.++...|++++|...
T Consensus 151 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7777777777777766543 334566666666677777777777777766665555666666666667677777777766
Q ss_pred HHHHHhc
Q 015416 286 VGGILDD 292 (407)
Q Consensus 286 ~~~~~~~ 292 (407)
|+++.+.
T Consensus 230 ~~~a~~~ 236 (258)
T 3uq3_A 230 LDAARTK 236 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666654
No 34
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.81 E-value=8.9e-18 Score=149.63 Aligned_cols=249 Identities=11% Similarity=0.046 Sum_probs=189.9
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCccccccc
Q 015416 47 GVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGK-FDEALKLFDRMKNEHNPPKRLAVNLG 125 (407)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (407)
..+|..+..++...|++++|+..|++++..+ +.+..+|..+..++...|+ +++|+..|+++++..+. +..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~---P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~------~~~ 167 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN---AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK------NYQ 167 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT------CHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC---ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC------CHH
Confidence 3567778888888888888888888888876 4467788888888888886 88888888888887655 666
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACF 205 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 205 (407)
+|..+..++...|++++|+..|++++... +.+...|..+..++...|++++|+..|+++++.. +-+...|+.+..++.
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~ 245 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVIS 245 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 88888888888888888888888888765 5577788888888888888888888888888753 235777888888888
Q ss_pred h-cCChHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 015416 206 E-VNRVDDG-----ATYFRKMVDSGLRPNLAVYNRLVGKLVQVG--MLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGG 277 (407)
Q Consensus 206 ~-~g~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 277 (407)
. .|..++| +..|+++++.. +-+...|+.+...+...| ++++|+..+..+ +..+.+...+..++.+|.+.|
T Consensus 246 ~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 246 NTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp HTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHH
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHh
Confidence 8 5554666 47788887743 335668888888888877 578888888887 656667788888888888764
Q ss_pred ---------CHHHHHHHHHHH-HhcCCCCCcHHHHHHHHHHHh
Q 015416 278 ---------KLDEILEIVGGI-LDDGGIEFSEELQEFVKGELS 310 (407)
Q Consensus 278 ---------~~~~A~~~~~~~-~~~~~~~~~~~~~~~l~~~~~ 310 (407)
.+++|+++|+++ .+.+ +.....|..++..+.
T Consensus 324 ~~~~~~~~~~~~~A~~~~~~l~~~~D--P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 324 ENQCDNKEDILNKALELCEILAKEKD--TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHTTC--GGGHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHH
Confidence 258888888888 6642 444456666655544
No 35
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.79 E-value=3.6e-17 Score=145.73 Aligned_cols=250 Identities=12% Similarity=0.074 Sum_probs=213.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCCchhhHH
Q 015416 10 PVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGM-EEEAMECYNEAVGENSSVKMSAVANN 88 (407)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
...|..+...+...|++++|+..|+++++. .|-+..+|+.++.++...|+ +++|+..|++++..+ +.+..+|.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l---~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~---P~~~~a~~ 170 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL---NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ---PKNYQVWH 170 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh---CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC---CCCHHHHH
Confidence 456888999999999999999999999996 34578899999999999997 999999999999987 55789999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 015416 89 SVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQ 168 (407)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 168 (407)
.+..++...|++++|+..|+++++..+. +..+|..+..++.+.|++++|+..|+++++.. +.+...|+.+..+
T Consensus 171 ~~g~~~~~~g~~~eAl~~~~kal~ldP~------~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~ 243 (382)
T 2h6f_A 171 HRRVLVEWLRDPSQELEFIADILNQDAK------NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFV 243 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCcc------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 9999999999999999999999998765 77899999999999999999999999999976 5678899999999
Q ss_pred HHH-cCCHHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015416 169 LCK-NGMLAEA-----EELYGEMSDKGVNPDEYTYGLLMDACFEVN--RVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240 (407)
Q Consensus 169 ~~~-~g~~~~a-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 240 (407)
+.. .|..++| +..|++++... +-+...|..+..++...| ++++|++.+..+ +. .+.+...+..++.+|.
T Consensus 244 l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~ 320 (382)
T 2h6f_A 244 ISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYE 320 (382)
T ss_dssp HHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHH
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHH
Confidence 999 6665777 58899988743 335778888898898888 689999999888 43 3456778999999998
Q ss_pred hcC---------CHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHh
Q 015416 241 QVG---------MLDEAKSFFDIM-VKKLKMDDASYKFMMKALSD 275 (407)
Q Consensus 241 ~~g---------~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 275 (407)
..| .+++|..+|+++ .+..|.....|..+...+..
T Consensus 321 ~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 321 DMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 874 358999999999 67666666777777666543
No 36
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.78 E-value=3.1e-18 Score=155.11 Aligned_cols=285 Identities=11% Similarity=0.060 Sum_probs=197.4
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccc
Q 015416 45 SDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKM-SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN 123 (407)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 123 (407)
+....+...+..+...|++++|+.+|++++...|..++ -..++..+..+|...|++++|...|+++.............
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 34445566777777777788887777777776532110 03456677777777788888887777765432111100113
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHHcCC--------------------HHHH
Q 015416 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRC-SPD----TLSFNNLIDQLCKNGM--------------------LAEA 178 (407)
Q Consensus 124 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~a 178 (407)
..++..+..+|...|++++|...+++...... .++ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 44677777888888888888888777654310 011 3367778888888888 8888
Q ss_pred HHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHH
Q 015416 179 EELYGEMSDK----GVNP-DEYTYGLLMDACFEVNRVDDGATYFRKMVDSGL-RPN----LAVYNRLVGKLVQVGMLDEA 248 (407)
Q Consensus 179 ~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A 248 (407)
...+++..+. +..| ...++..+...|...|++++|...++++.+... .++ ..++..++..|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 8888876542 1111 144677888888999999999999988874210 112 23788889999999999999
Q ss_pred HHHHHHHHhcCC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCCcHHHHHHHHHHHhhcCcHHHH
Q 015416 249 KSFFDIMVKKLK--MD----DASYKFMMKALSDGGKLDEILEIVGGILDDGG----IEFSEELQEFVKGELSKEGREEEV 318 (407)
Q Consensus 249 ~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A 318 (407)
...+++.....+ ++ ..++..++..|...|++++|...++++..... .......+..++.+|.+.|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999998887211 11 56788889999999999999999998876421 111245777889999999999999
Q ss_pred HHHHHHHHHhh
Q 015416 319 VKLMEKKEREK 329 (407)
Q Consensus 319 ~~~~~~~~~~~ 329 (407)
...+++.....
T Consensus 327 ~~~~~~al~~~ 337 (406)
T 3sf4_A 327 MHFAEKHLEIS 337 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 37
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=4.5e-16 Score=146.20 Aligned_cols=303 Identities=10% Similarity=0.037 Sum_probs=167.7
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhH
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVAN 87 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (407)
-|...|..++. +.+.|++++|..+|+++.+. .|.+...|..++..+.+.|++++|..+|++++... |+...|
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~---~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~----p~~~lw 82 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQ---FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV----LHIDLW 82 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC----CCHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CChHHH
Confidence 36678888888 47899999999999999985 56688899999999999999999999999999864 355566
Q ss_pred HHHHHH-HHhcCCHHHHHH----HHHHHHhc-CCCCCccccccchHHHHHHHHHh---------cCCHHHHHHHHHHHhh
Q 015416 88 NSVLDA-LCNNGKFDEALK----LFDRMKNE-HNPPKRLAVNLGSFNVMADGYCG---------QGRFKDAIEVFRKMGE 152 (407)
Q Consensus 88 ~~l~~~-~~~~~~~~~A~~----~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~ 152 (407)
..++.. ....|+++.|.+ +|++.+.. |..|. +...|...+....+ .|+++.|..+|++.++
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~----~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 83 KCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIM----SYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTT----CHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcc----cHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 665542 233455544443 45444332 22221 23344444444332 4555555555555544
Q ss_pred CCCCCC--HHHHH-----------------------------------------------------------------HH
Q 015416 153 YRCSPD--TLSFN-----------------------------------------------------------------NL 165 (407)
Q Consensus 153 ~~~~~~--~~~~~-----------------------------------------------------------------~l 165 (407)
. |.+ ...|. ..
T Consensus 159 ~--P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 159 N--PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp S--CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred c--hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 2 111 01111 11
Q ss_pred HHHHHHc----CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHHC
Q 015416 166 IDQLCKN----GML----AEAEELYGEMSDKGVNPDEYTYGLLMDACFE-------VNRVD-------DGATYFRKMVDS 223 (407)
Q Consensus 166 ~~~~~~~----g~~----~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~~ 223 (407)
+...... ++. ..+..+|++++.. .+.+...|..++..+.. .|+++ +|..+|++.++.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 1000000 011 1333444444432 12245555555555553 46654 666666666642
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHH
Q 015416 224 GLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDD-ASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQ 302 (407)
Q Consensus 224 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 302 (407)
-.+.+...|..++..+.+.|++++|..+|+++++..+.++ ..|..++..+.+.|++++|.++|+++++.. +.....+
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~~ 393 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVY 393 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHHH
Confidence 1233455666666666666666666666666666333332 356666666666666666666666666542 2222222
Q ss_pred HHHHHH-HhhcCcHHHHHHHHHHHHH
Q 015416 303 EFVKGE-LSKEGREEEVVKLMEKKER 327 (407)
Q Consensus 303 ~~l~~~-~~~~g~~~~A~~~~~~~~~ 327 (407)
...+.. +...|+.++|..+|++..+
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~ 419 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLK 419 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 222211 2245666666666665554
No 38
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.78 E-value=1e-17 Score=143.31 Aligned_cols=222 Identities=13% Similarity=0.019 Sum_probs=109.5
Q ss_pred cCChhhHHHHHHHHHHhhCC-ccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHH
Q 015416 23 DGDSDGVFRLFEELKEKLGG-VVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFD 101 (407)
Q Consensus 23 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 101 (407)
.|++++|+..|+++.+..+. .+.+..+|..++.++...|++++|+..|++++..+ +.+..+|..++.+|...|+++
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR---PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTCHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHccCHH
Confidence 45566666666666553110 11234555566666666666666666666666554 334555666666666666666
Q ss_pred HHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 015416 102 EALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEEL 181 (407)
Q Consensus 102 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 181 (407)
+|...|+++.+..+. +..++..++.+|...|++++|...|+++.+.. |+.......+..+...|++++|...
T Consensus 95 ~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~ 166 (275)
T 1xnf_A 95 AAYEAFDSVLELDPT------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEV 166 (275)
T ss_dssp HHHHHHHHHHHHCTT------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHhcCcc------ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHH
Confidence 666666666655432 34455556666666666666666666655543 3333333333333444555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 182 YGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRP---NLAVYNRLVGKLVQVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 182 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 257 (407)
+++..... +++...+ .++..+...++.++|...+..+.+..... +..++..++..|...|++++|...|+++..
T Consensus 167 ~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 167 LKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55544321 2222222 24444444455555555555444321000 023344444444444444444444444443
No 39
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=4e-18 Score=150.53 Aligned_cols=270 Identities=14% Similarity=0.135 Sum_probs=131.5
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhH
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVAN 87 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (407)
+++.+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+.+++.+.+. .++..+.
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika--------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~----~~~~~i~ 97 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK----ARESYVE 97 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC--------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh----CccchhH
Confidence 45568889999999999999999998542 36778888899998899999999977777653 3346778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015416 88 NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLID 167 (407)
Q Consensus 88 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 167 (407)
+.++.+|.+.|+++++.++++. | +..+|..++..|...|.+++|..+|..+ ..|..++.
T Consensus 98 ~~Li~~Y~Klg~l~e~e~f~~~-------p-----n~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~ 156 (449)
T 1b89_A 98 TELIFALAKTNRLAELEEFING-------P-----NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLAS 156 (449)
T ss_dssp -----------CHHHHTTTTTC-------C---------------------CTTTHHHHHHHT---------TCHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHcC-------C-----cHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHH
Confidence 8888899999999888877741 2 4458889999999999999999999876 36888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 015416 168 QLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDE 247 (407)
Q Consensus 168 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 247 (407)
++.+.|++++|++.++++ .++.+|..++.+|...|+++.|..+...+ ..++.-...++..|.+.|++++
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHH
Confidence 999999999999999888 26788999999999999999986555442 2344445568888999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCCC------cHHHHHHHHHHHhhcCcHHHHH
Q 015416 248 AKSFFDIMVKKLKMDDASYKFMMKALSDG--GKLDEILEIVGGILDDGGIEF------SEELQEFVKGELSKEGREEEVV 319 (407)
Q Consensus 248 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~ 319 (407)
|..+++..+...+-...+|.-+..+|++- ++..+.++.|. ..-.++| ....|..++-.|...++++.|.
T Consensus 226 ai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 226 LITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 99999999886667788888888888764 34444444444 3222344 3457778888899999999887
Q ss_pred HHHHH
Q 015416 320 KLMEK 324 (407)
Q Consensus 320 ~~~~~ 324 (407)
..+-+
T Consensus 303 ~tm~~ 307 (449)
T 1b89_A 303 ITMMN 307 (449)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65443
No 40
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.78 E-value=4.2e-17 Score=136.75 Aligned_cols=212 Identities=14% Similarity=0.083 Sum_probs=114.2
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccc
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLG 125 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (407)
.+..|..++..+...|++++|+.+|++++... +.+...+..++.++...|++++|...|+++.+..+. +..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~ 92 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN---KEDAIPYINFANLLSSVNELERALAFYDKALELDSS------AAT 92 (243)
T ss_dssp --------------------CCTTHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc------chH
Confidence 44556666666777777777777777776654 335666666666777777777777777776665432 445
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACF 205 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 205 (407)
++..++.+|...|++++|...|+++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..++..+.
T Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 170 (243)
T 2q7f_A 93 AYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLA 170 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 56666666666666666666666666543 3455566666666666666666666666665532 224555555556666
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 015416 206 EVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFM 269 (407)
Q Consensus 206 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 269 (407)
..|++++|...++++.+.. +.+..++..++.+|...|++++|...++++....|.+..++..+
T Consensus 171 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 233 (243)
T 2q7f_A 171 NEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAK 233 (243)
T ss_dssp HHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHH
Confidence 6666666666666655432 23444555555566666666666666665555444444444433
No 41
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.77 E-value=1.9e-15 Score=129.14 Aligned_cols=223 Identities=9% Similarity=0.008 Sum_probs=123.9
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCccc
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCN----NGKFDEALKLFDRMKNEHNPPKRLA 121 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 121 (407)
++.++..++..+...|++++|+.+|+++.+.+ +..++..+..+|.. .+++++|...|++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK-----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-------
Confidence 44455555566666666666666666655532 23445555555555 566666666666655543
Q ss_pred cccchHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCC
Q 015416 122 VNLGSFNVMADGYCG----QGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCK----NGMLAEAEELYGEMSDKGVNPD 193 (407)
Q Consensus 122 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~ 193 (407)
+..++..+..+|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +
T Consensus 73 -~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~ 145 (273)
T 1ouv_A 73 -YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---D 145 (273)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred -CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---c
Confidence 33355555555555 566666666666655543 45555555555555 566666666666655543 3
Q ss_pred HHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCHHH
Q 015416 194 EYTYGLLMDACFE----VNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQ----VGMLDEAKSFFDIMVKKLKMDDAS 265 (407)
Q Consensus 194 ~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 265 (407)
...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|..+|++..+.. +...
T Consensus 146 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a 220 (273)
T 1ouv_A 146 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGG 220 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--CHHH
Confidence 4445555555555 555666666666555532 34455555555555 556666666665555421 2445
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhc
Q 015416 266 YKFMMKALSD----GGKLDEILEIVGGILDD 292 (407)
Q Consensus 266 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 292 (407)
+..+...|.. .+++++|+..|+++.+.
T Consensus 221 ~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 221 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 5555555555 55556666666555554
No 42
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=1.8e-16 Score=146.70 Aligned_cols=311 Identities=10% Similarity=-0.039 Sum_probs=218.0
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCc-----cCCcchHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCC
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGV-----VSDGVVYGSLMKGYFMK--GMEEEAMECYNEAVGENSSVK 81 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~ 81 (407)
...+|+.+..+|...|++++|...|++..+..+.. ...+.++..++.++... +++++|+..|++++..+|
T Consensus 93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p--- 169 (472)
T 4g1t_A 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP--- 169 (472)
T ss_dssp THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST---
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC---
Confidence 45679999999999999999999999887642111 11245677777666654 579999999999999874
Q ss_pred CchhhHHHHHHH---HHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHh----cCCHHHHHHHHHHHhhCC
Q 015416 82 MSAVANNSVLDA---LCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCG----QGRFKDAIEVFRKMGEYR 154 (407)
Q Consensus 82 ~~~~~~~~l~~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 154 (407)
.+...+..+..+ +...++.++|++.|++.++..+. +..++..+...+.. .|++++|.+++++.....
T Consensus 170 ~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~------~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~ 243 (472)
T 4g1t_A 170 KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD------NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA 243 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS------CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc------chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC
Confidence 355566555544 44568888999999999887654 45566666655544 467889999999988765
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-------------------CChHHHHH
Q 015416 155 CSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEV-------------------NRVDDGAT 215 (407)
Q Consensus 155 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-------------------g~~~~a~~ 215 (407)
+.+..++..++..|...|++++|+..|+++.+.. +.+..++..+..+|... +..+.|..
T Consensus 244 -~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 321 (472)
T 4g1t_A 244 -PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVA 321 (472)
T ss_dssp -SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHH
T ss_pred -ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHH
Confidence 5677889999999999999999999999998853 33466777777666432 23567888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHH-HHHhcCCHHHHHHHHHHHHh
Q 015416 216 YFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDA---SYKFMMK-ALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~-~~~~~g~~~~A~~~~~~~~~ 291 (407)
.++++.+.. +.+..++..++..|...|++++|...|++.+...+++.. .+..+.. .+...|++++|+..|.+++.
T Consensus 322 ~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 322 HLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp HHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 888887743 334557889999999999999999999999884443322 2333333 34578999999999998876
Q ss_pred cCC----------------------CCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHH
Q 015416 292 DGG----------------------IEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAE 331 (407)
Q Consensus 292 ~~~----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 331 (407)
... -|.+...+..++.+|...|++++|++.+++..+.+..
T Consensus 401 i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 401 INQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 421 1445668888999999999999999999998876533
No 43
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.77 E-value=1.6e-17 Score=150.46 Aligned_cols=307 Identities=14% Similarity=0.093 Sum_probs=232.5
Q ss_pred CcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCC----cchHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CC
Q 015416 7 VADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSD----GVVYGSLMKGYFMKGMEEEAMECYNEAVGEN---SS 79 (407)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~ 79 (407)
.+....+......+...|++++|+..|+++.+.. +.+ ..+|..++.++...|++++|+..|++++... ..
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 82 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG---TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD 82 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc
Confidence 4566677888899999999999999999999862 223 3578899999999999999999999876531 11
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCC--------------------
Q 015416 80 VKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGR-------------------- 139 (407)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------------------- 139 (407)
.+....++..+..+|...|++++|...++++.+..+..........++..+...|...|+
T Consensus 83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~ 162 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA 162 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH
Confidence 122356788899999999999999999998876532211111124478889999999999
Q ss_pred HHHHHHHHHHHhhC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC
Q 015416 140 FKDAIEVFRKMGEY----RCS-PDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGV-NPD----EYTYGLLMDACFEVNR 209 (407)
Q Consensus 140 ~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~ 209 (407)
+++|...+.+.... +.. ....++..++..|...|++++|...++++.+... .++ ..++..+...|...|+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 99999999887542 111 1234788899999999999999999999875210 112 3478889999999999
Q ss_pred hHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCC----HHHHHHHHHHHHhcCC
Q 015416 210 VDDGATYFRKMVDSGL-RPN----LAVYNRLVGKLVQVGMLDEAKSFFDIMVKK--LKMD----DASYKFMMKALSDGGK 278 (407)
Q Consensus 210 ~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~ 278 (407)
+++|...+++..+... .++ ..++..++..|...|++++|...+++.... ...+ ..++..+..+|...|+
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 322 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN 322 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 9999999999874210 111 457889999999999999999999998871 1112 5678899999999999
Q ss_pred HHHHHHHHHHHHhcC---C-CCCcHHHHHHHHHHHhhcCcHH
Q 015416 279 LDEILEIVGGILDDG---G-IEFSEELQEFVKGELSKEGREE 316 (407)
Q Consensus 279 ~~~A~~~~~~~~~~~---~-~~~~~~~~~~l~~~~~~~g~~~ 316 (407)
+++|...++++.+.. + .+.....+..++.++...|+..
T Consensus 323 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 323 HDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 999999999987641 1 1222346667777777777663
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.77 E-value=7e-16 Score=130.13 Aligned_cols=201 Identities=14% Similarity=0.057 Sum_probs=135.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 015416 84 AVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFN 163 (407)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 163 (407)
...+..++..+...|++++|...|+++.+..+. +..++..++.+|...|++++|.+.|+++.... +.+...+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 109 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS------SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLN 109 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHH
Confidence 455666666666777777777777776665432 44566666677777777777777777766653 34556666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 015416 164 NLIDQLCKNGMLAEAEELYGEMSDKGVNP-DEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQV 242 (407)
Q Consensus 164 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 242 (407)
.++..|...|++++|..+|+++.+.+..| +...+..++.+|...|++++|..+++++.+.. +.+...+..++..|...
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 188 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKE 188 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHc
Confidence 67777777777777777777776522233 34556666677777777777777777776643 33466677777777777
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 243 GMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 243 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
|++++|..+++.+....+.+...+..+...+...|++++|.++++++.+.
T Consensus 189 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 189 REYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp TCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 77777777777777766666777777777777777777777777777765
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.77 E-value=3.4e-15 Score=127.64 Aligned_cols=226 Identities=12% Similarity=0.022 Sum_probs=201.9
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCC
Q 015416 83 SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCG----QGRFKDAIEVFRKMGEYRCSPD 158 (407)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~ 158 (407)
+..++..+...|...|++++|+..|++..+.+ +..++..+...|.. .+++++|+..|++..+.+ +
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~ 73 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK--------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---Y 73 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---C
Confidence 56788889999999999999999999999843 55688899999999 999999999999999875 7
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHH
Q 015416 159 TLSFNNLIDQLCK----NGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFE----VNRVDDGATYFRKMVDSGLRPNLA 230 (407)
Q Consensus 159 ~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 230 (407)
...+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +..
T Consensus 74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~ 147 (273)
T 1ouv_A 74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGD 147 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHH
Confidence 8899999999999 999999999999999865 77889999999999 999999999999999865 677
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCcHHHH
Q 015416 231 VYNRLVGKLVQ----VGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSD----GGKLDEILEIVGGILDDGGIEFSEELQ 302 (407)
Q Consensus 231 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 302 (407)
.+..+...|.. .+++++|..+|++..+. .++..+..+...|.. .+++++|+..|+++.+.. + ...+
T Consensus 148 a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~-~~a~ 221 (273)
T 1ouv_A 148 GCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---N-GGGC 221 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---C-HHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---C-HHHH
Confidence 88899999998 99999999999999874 357888999999999 999999999999999862 2 6677
Q ss_pred HHHHHHHhh----cCcHHHHHHHHHHHHHhhHH
Q 015416 303 EFVKGELSK----EGREEEVVKLMEKKEREKAE 331 (407)
Q Consensus 303 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 331 (407)
..++.+|.+ .+++++|...+++..+.+..
T Consensus 222 ~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 222 FNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 888999998 99999999999999877744
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.77 E-value=1.9e-17 Score=141.60 Aligned_cols=249 Identities=10% Similarity=-0.055 Sum_probs=197.9
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCC-CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHh
Q 015416 58 FMKGMEEEAMECYNEAVGENSSV-KMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCG 136 (407)
Q Consensus 58 ~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 136 (407)
...|++++|+..|+++++..+.. +.+..++..++.++...|++++|...|+++.+..+. +..++..++.+|..
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~ 89 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFNYLGIYLTQ 89 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHH
Confidence 34588999999999999864211 235678889999999999999999999999988654 66789999999999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 015416 137 QGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATY 216 (407)
Q Consensus 137 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 216 (407)
.|++++|+..|+++.... +.+...+..++.+|...|++++|...|+++.+. .|+.......+..+...|++++|...
T Consensus 90 ~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~ 166 (275)
T 1xnf_A 90 AGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEV 166 (275)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999999999865 457889999999999999999999999999984 45544455555666778999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 217 FRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLK----MDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
+.+..... +++...+ .++..+...++.++|...+.......+ .+..++..++.+|...|++++|+..|++++..
T Consensus 167 ~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 167 LKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 98888653 3444444 477778888899999999998876322 12578899999999999999999999999986
Q ss_pred CCCCCcHHHHHHHHHHHhhcCcHHHHHHHH
Q 015416 293 GGIEFSEELQEFVKGELSKEGREEEVVKLM 322 (407)
Q Consensus 293 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 322 (407)
. +.+.. ....++...|++++|++.+
T Consensus 245 ~--p~~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 245 N--VHNFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp C--CTTCH---HHHHHHHHHHHHHHC----
T ss_pred C--chhHH---HHHHHHHHHHHHHhhHHHH
Confidence 3 22322 2355677889999988776
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.76 E-value=1.2e-15 Score=126.22 Aligned_cols=199 Identities=13% Similarity=0.081 Sum_probs=92.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 015416 85 VANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNN 164 (407)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 164 (407)
..+..++..+...|++++|.+.|+++.+..+. +..++..++.+|...|++++|..+|+++.... +.+..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 81 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPK------NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNN 81 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc------chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHH
Confidence 33444444444444444444444444443322 23344444444444444444444444444332 223344444
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 015416 165 LIDQLCKN-GMLAEAEELYGEMSDKGVNPD-EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQV 242 (407)
Q Consensus 165 l~~~~~~~-g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 242 (407)
++..+... |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+.. +.+...+..++..+...
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHc
Confidence 44444444 555555555544444111121 3344444455555555555555555554432 22344555555555555
Q ss_pred CCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 243 GMLDEAKSFFDIMVKKLK-MDDASYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 243 g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
|++++|..+++++....+ .+...+..+...+...|+.+.|..+++.+..
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 555555555555555444 4445555555555555555555555555544
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.76 E-value=6e-16 Score=130.56 Aligned_cols=208 Identities=15% Similarity=0.058 Sum_probs=145.2
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccch
Q 015416 47 GVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGS 126 (407)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 126 (407)
+..|..++..+...|++++|+.+|++++... +.+..++..++.+|...|++++|.+.|+++.+..+. +..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~ 107 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID---PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR------NARV 107 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------cHHH
Confidence 4566677777777777777777777777665 335667777777777777777777777777766543 4556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015416 127 FNVMADGYCGQGRFKDAIEVFRKMGEYRCSP-DTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACF 205 (407)
Q Consensus 127 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 205 (407)
+..++.+|...|++++|.++|+++...+..| +...+..++.++...|++++|...|+++.+.. +.+...+..++..|.
T Consensus 108 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 186 (252)
T 2ho1_A 108 LNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLY 186 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHH
Confidence 7777777777777777777777776622223 44566777777777777777777777777642 234667777777777
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 015416 206 EVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDAS 265 (407)
Q Consensus 206 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 265 (407)
..|++++|..+++++.+.. +.+...+..++..+...|++++|..+++++....|.+...
T Consensus 187 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 187 KEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 7788888888887777643 3456677777777777888888888888777755545443
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.76 E-value=1e-15 Score=126.50 Aligned_cols=208 Identities=13% Similarity=0.019 Sum_probs=104.8
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccch
Q 015416 47 GVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGS 126 (407)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 126 (407)
+.+|..++..+...|++++|+.+|++++... +.+...+..++.+|...|++++|...|+++.+..+. +..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~ 78 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD---PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD------SAEI 78 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------ChHH
Confidence 3444455555555555555555555555443 223444555555555555555555555555544322 3334
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015416 127 FNVMADGYCGQ-GRFKDAIEVFRKMGEYRCSP-DTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDAC 204 (407)
Q Consensus 127 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 204 (407)
+..++.+|... |++++|...|+++...+..| +...+..++.++...|++++|+..|+++.+.. +.+...+..++.++
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 157 (225)
T 2vq2_A 79 NNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTK 157 (225)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHH
Confidence 45555555555 55555555555555421112 23445555555555555555555555555431 22344555555555
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 015416 205 FEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDA 264 (407)
Q Consensus 205 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 264 (407)
...|++++|..+++++.+.....+...+..+...+...|+.+.|..+++.+....|.++.
T Consensus 158 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 158 MLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 556666666666655554321134445555555555566666666666555543333333
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.76 E-value=1.1e-16 Score=134.15 Aligned_cols=213 Identities=14% Similarity=0.151 Sum_probs=152.8
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 015416 82 MSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLS 161 (407)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 161 (407)
.....|..++..+...|++++|...|+++.+..+. +..++..++.+|...|++++|+..|+++.... +.+...
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 93 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE------DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATA 93 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHH
Confidence 34556777788888888999999999888876543 56678888888888999999999888887764 456778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 015416 162 FNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQ 241 (407)
Q Consensus 162 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 241 (407)
+..++..+...|++++|..+++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..++..+..
T Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 171 (243)
T 2q7f_A 94 YYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLAN 171 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence 8888888888899999998888887753 3457778888888888888888888888888753 4467788888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 015416 242 VGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFV 305 (407)
Q Consensus 242 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 305 (407)
.|++++|...|+++....+.+..++..++.+|...|++++|...|+++.+.. +.+...+..+
T Consensus 172 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~ 233 (243)
T 2q7f_A 172 EGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ--PDHMLALHAK 233 (243)
T ss_dssp HTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC--cchHHHHHHH
Confidence 8888888888888888777778888888888888888888888888888763 4444444443
No 51
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=4.1e-18 Score=150.44 Aligned_cols=251 Identities=16% Similarity=0.197 Sum_probs=116.0
Q ss_pred hcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHH
Q 015416 22 RDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFD 101 (407)
Q Consensus 22 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 101 (407)
+.|++++|.+.++++. ++.+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|+++
T Consensus 15 ~~~~ld~A~~fae~~~--------~~~vWs~La~A~l~~g~~~eAIdsfika--------~D~~~y~~V~~~ae~~g~~E 78 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN--------EPAVWSQLAKAQLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWE 78 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHcC--------CCHHHHHHHHHHHHhCCCHH
Confidence 5688999999999883 3359999999999999999999999653 35668999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 015416 102 EALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEEL 181 (407)
Q Consensus 102 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 181 (407)
+|+.+++..++.. + ++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|.+++|..+
T Consensus 79 eAi~yl~~ark~~--~-----~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~ 144 (449)
T 1b89_A 79 ELVKYLQMARKKA--R-----ESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLL 144 (449)
T ss_dssp -------------------------------------CHHHHTTTTT-------CC----------------CTTTHHHH
T ss_pred HHHHHHHHHHHhC--c-----cchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999888777642 1 45578889999999999999988774 37778999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 015416 182 YGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKM 261 (407)
Q Consensus 182 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 261 (407)
|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. .
T Consensus 145 Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~----~ 205 (449)
T 1b89_A 145 YNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV----V 205 (449)
T ss_dssp HHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT----T
T ss_pred HHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH----h
Confidence 9977 37899999999999999999999998 278899999999999999999966665432 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhc--CcHHHHHHHHH
Q 015416 262 DDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKE--GREEEVVKLME 323 (407)
Q Consensus 262 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 323 (407)
++.-...++..|.+.|++++|+.+++..+... +-....|..++.+|.+- |+..+.++.|.
T Consensus 206 ~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le--~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 206 HADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 55556679999999999999999999999864 55667888887777654 45555555554
No 52
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.76 E-value=3.5e-17 Score=148.63 Aligned_cols=286 Identities=11% Similarity=0.037 Sum_probs=217.6
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccccc
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKM-SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (407)
....+..++..+...|++++|+.+|++++...++.+. -..++..+..+|...|++++|...|+++.+............
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 3445667888899999999999999999987632110 024788889999999999999999998876421111111145
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHhhC----C-CCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHH
Q 015416 125 GSFNVMADGYCGQGRFKDAIEVFRKMGEY----R-CSPDTLSFNNLIDQLCKNGM-----------------LAEAEELY 182 (407)
Q Consensus 125 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~ 182 (407)
.++..+..+|...|++++|...|++.... + .+....++..+...|...|+ +++|+..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 67888999999999999999999987653 1 11224478889999999999 99999999
Q ss_pred HHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 015416 183 GEMSDK----GVNP-DEYTYGLLMDACFEVNRVDDGATYFRKMVDSGL-RPN----LAVYNRLVGKLVQVGMLDEAKSFF 252 (407)
Q Consensus 183 ~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~ 252 (407)
++..+. +..+ ...++..+...|...|++++|...+++..+... .++ ..++..++..|...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 887642 1111 245788889999999999999999999875210 112 237888999999999999999999
Q ss_pred HHHHhcCC--C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCCcHHHHHHHHHHHhhcCcHHHHHHHH
Q 015416 253 DIMVKKLK--M----DDASYKFMMKALSDGGKLDEILEIVGGILDDGG----IEFSEELQEFVKGELSKEGREEEVVKLM 322 (407)
Q Consensus 253 ~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 322 (407)
++.....+ . ...++..++.+|...|++++|..++++++.... .......+..++.+|.+.|++++|...+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 99887221 1 256788899999999999999999999876421 1122347788899999999999999999
Q ss_pred HHHHHhhHH
Q 015416 323 EKKEREKAE 331 (407)
Q Consensus 323 ~~~~~~~~~ 331 (407)
++.......
T Consensus 367 ~~al~~~~~ 375 (411)
T 4a1s_A 367 EQHLQLAXX 375 (411)
T ss_dssp HHHHHHCCH
T ss_pred HHHHHHHhh
Confidence 998865544
No 53
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=3.8e-18 Score=162.58 Aligned_cols=163 Identities=11% Similarity=0.083 Sum_probs=131.3
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 015416 124 LGSFNVMADGYCGQGRFKDAIEVFRKMGE---YRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLL 200 (407)
Q Consensus 124 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 200 (407)
..+|++||++|++.|++++|.++|.+|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34899999999999999999999988754 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHH
Q 015416 201 MDACFEVNRV-DDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMD------DASYKFMMKAL 273 (407)
Q Consensus 201 ~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~ 273 (407)
|.++++.|+. +.|.++|++|.+.|+.||..+|+.++..+.+. ..++..+++..++.|+ ..+...|...|
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 9999999985 78999999999999999999999988655543 3444444443344333 33445566666
Q ss_pred HhcC---------CHHHHHHHHHHHH
Q 015416 274 SDGG---------KLDEILEIVGGIL 290 (407)
Q Consensus 274 ~~~g---------~~~~A~~~~~~~~ 290 (407)
.+.+ ..++-..+|++=+
T Consensus 283 s~d~~~s~pk~~~~~~~L~~~~~~Ql 308 (1134)
T 3spa_A 283 AKDGRVSYPKLHLPLKTLQCLFEKQL 308 (1134)
T ss_dssp CCCSCCCCCCCSSCHHHHHHHHHHHH
T ss_pred ccCCCCcCccccCCHHHHHHHHHHHH
Confidence 6655 2455556665543
No 54
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.75 E-value=3e-17 Score=149.09 Aligned_cols=280 Identities=15% Similarity=0.105 Sum_probs=216.8
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCc----chHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCC
Q 015416 10 PVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDG----VVYGSLMKGYFMKGMEEEAMECYNEAVGEN---SSVKM 82 (407)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~ 82 (407)
...+..+...+...|++++|+..|+++.+.. +.+. .+|..++.+|...|++++|+..|++++... .+.+.
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG---TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc---ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 3445667788899999999999999999962 2233 478899999999999999999999987641 11133
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCC-----------------HHHHHH
Q 015416 83 SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGR-----------------FKDAIE 145 (407)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~ 145 (407)
...++..+..+|...|++++|...|+++.+.............++..+..+|...|+ +++|+.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 566788899999999999999999999876521111011145578889999999999 999999
Q ss_pred HHHHHhhC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCChHHHHH
Q 015416 146 VFRKMGEY----RC-SPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGV-NPD----EYTYGLLMDACFEVNRVDDGAT 215 (407)
Q Consensus 146 ~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~ 215 (407)
.+++.... +. +....++..+...|...|++++|+..+++..+... .++ ..++..+..+|...|++++|..
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 99887542 11 11234788899999999999999999999875311 112 3378889999999999999999
Q ss_pred HHHHHHHCC--CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---C---CCCHHHHHHHHHHHHhcCCHHHHHH
Q 015416 216 YFRKMVDSG--LR---PNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK---L---KMDDASYKFMMKALSDGGKLDEILE 284 (407)
Q Consensus 216 ~~~~~~~~~--~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~~~~l~~~~~~~g~~~~A~~ 284 (407)
.++++.+.. .. ....++..++..|...|++++|..++++.... . .....++..+..+|...|++++|..
T Consensus 285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 364 (411)
T 4a1s_A 285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK 364 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 999887521 11 11457888999999999999999999998871 1 1124578889999999999999999
Q ss_pred HHHHHHhc
Q 015416 285 IVGGILDD 292 (407)
Q Consensus 285 ~~~~~~~~ 292 (407)
+|+++...
T Consensus 365 ~~~~al~~ 372 (411)
T 4a1s_A 365 YAEQHLQL 372 (411)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999875
No 55
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.75 E-value=2.4e-16 Score=141.79 Aligned_cols=303 Identities=13% Similarity=0.066 Sum_probs=219.7
Q ss_pred HHhcCChhhHHHHHHHHHHhhCCccCCcc--hHHHHHHH--HHHcCCHHHHH-----------HHHHHHHhCCCCCCCch
Q 015416 20 FVRDGDSDGVFRLFEELKEKLGGVVSDGV--VYGSLMKG--YFMKGMEEEAM-----------ECYNEAVGENSSVKMSA 84 (407)
Q Consensus 20 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~l~~~--~~~~g~~~~A~-----------~~~~~~~~~~~~~~~~~ 84 (407)
+.+.+++++|..+++++.+..+....+.. .|..++.. ....++++.+. +.++.+.... .+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~----~~~ 97 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ----ARL 97 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT----HHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC----CCc
Confidence 46789999999999999886444433433 33444332 22334455555 6666665422 112
Q ss_pred hh------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CC
Q 015416 85 VA------NNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRC-SP 157 (407)
Q Consensus 85 ~~------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~ 157 (407)
.. +...+..+...|++++|...|+++.+.............++..++.+|...|++++|+..+.+..+... .+
T Consensus 98 ~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 177 (383)
T 3ulq_A 98 TGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE 177 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS
T ss_pred hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc
Confidence 22 223667788999999999999999875221111111346889999999999999999999998865310 11
Q ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----
Q 015416 158 -----DTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGV-NPD----EYTYGLLMDACFEVNRVDDGATYFRKMVDS---- 223 (407)
Q Consensus 158 -----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 223 (407)
...+++.++.+|...|++++|+..|+++.+... .++ ..++..+..+|...|++++|...+++..+.
T Consensus 178 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 178 AYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES 257 (383)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 235788999999999999999999999875211 112 347888999999999999999999998862
Q ss_pred CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCC
Q 015416 224 GL-RPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-----LKMDDASYKFMMKALSDGGK---LDEILEIVGGILDDGG 294 (407)
Q Consensus 224 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~ 294 (407)
+. +....++..++..|...|++++|...+++.... .+.....+..+...+...|+ +++|+.++++...
T Consensus 258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--- 334 (383)
T 3ulq_A 258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--- 334 (383)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC---
T ss_pred ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC---
Confidence 22 334568999999999999999999999998871 22223346778888889999 8888888887622
Q ss_pred CCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 295 IEFSEELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 295 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
.+.....+..++..|...|++++|...+++.....
T Consensus 335 ~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 335 YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 24455578889999999999999999999886543
No 56
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=2.8e-14 Score=133.96 Aligned_cols=220 Identities=12% Similarity=0.068 Sum_probs=172.8
Q ss_pred HHHHHHHHHHhcCCCCCccccccchHHHHHHHHHh-------cCCHH-------HHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015416 102 EALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCG-------QGRFK-------DAIEVFRKMGEYRCSPDTLSFNNLID 167 (407)
Q Consensus 102 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~~~~~l~~ 167 (407)
.+..+|++++...+. +...|..++..+.+ .|+++ +|..+|++.++.-.|.+...|..++.
T Consensus 256 ~a~~~y~~al~~~p~------~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~ 329 (530)
T 2ooe_A 256 RVMFAYEQCLLVLGH------HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYAD 329 (530)
T ss_dssp HHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 334445555444322 45577777777775 79987 89999999987323556889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCC-H-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCC
Q 015416 168 QLCKNGMLAEAEELYGEMSDKGVNPD-E-YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGK-LVQVGM 244 (407)
Q Consensus 168 ~~~~~g~~~~a~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~ 244 (407)
.+.+.|++++|..+|+++++. .|+ . ..|..++..+.+.|++++|.++|++..+.. +.+...|...+.. +...|+
T Consensus 330 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~ 406 (530)
T 2ooe_A 330 YEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKD 406 (530)
T ss_dssp HHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCC
T ss_pred HHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCC
Confidence 999999999999999999984 454 3 578889999999999999999999999752 2233444433333 346899
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc--HHHHHHHHHHHhhcCcHHHHHHHH
Q 015416 245 LDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFS--EELQEFVKGELSKEGREEEVVKLM 322 (407)
Q Consensus 245 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~ 322 (407)
+++|..+|+..++..|.++..|..++..+.+.|+.++|..+|++++.....+|. ...|...+....+.|+.+.+..+.
T Consensus 407 ~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~ 486 (530)
T 2ooe_A 407 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 486 (530)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999977778999999999999999999999999999987433332 447777788888899999999999
Q ss_pred HHHHHhhH
Q 015416 323 EKKEREKA 330 (407)
Q Consensus 323 ~~~~~~~~ 330 (407)
+++.+.-+
T Consensus 487 ~r~~~~~p 494 (530)
T 2ooe_A 487 KRRFTAFR 494 (530)
T ss_dssp HHHHHHTH
T ss_pred HHHHHHCc
Confidence 98876554
No 57
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.74 E-value=6.3e-17 Score=142.34 Aligned_cols=279 Identities=14% Similarity=0.125 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCC----cchHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCC
Q 015416 10 PVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSD----GVVYGSLMKGYFMKGMEEEAMECYNEAVGEN---SSVKM 82 (407)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~ 82 (407)
...+......+...|++++|+.+|+++.+..+ .+ ..++..++..+...|++++|+..|++++... ...+.
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGT---EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 81 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCc---ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHH
Confidence 34455667778888999999999988888622 23 3567788888888899999988888876431 00122
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCC--------------------HHH
Q 015416 83 SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGR--------------------FKD 142 (407)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------------~~~ 142 (407)
...++..+..++...|++++|...+++..+.............++..+...|...|+ +++
T Consensus 82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (338)
T 3ro2_A 82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQA 161 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHH
Confidence 355677788888888888888888888765432211101123366777777777777 777
Q ss_pred HHHHHHHHhhC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCChHH
Q 015416 143 AIEVFRKMGEY----RC-SPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGV-NPD----EYTYGLLMDACFEVNRVDD 212 (407)
Q Consensus 143 A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~ 212 (407)
|...+++.... +. +.....+..+...+...|++++|...++++.+... .++ ..++..+...+...|++++
T Consensus 162 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 241 (338)
T 3ro2_A 162 AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 241 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHH
Confidence 77766665431 10 01122455556666666666666666665543100 001 1244445555555555555
Q ss_pred HHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC----CHHHHHHHHHHHHhcCCHHH
Q 015416 213 GATYFRKMVDSGL-RPN----LAVYNRLVGKLVQVGMLDEAKSFFDIMVKKL--KM----DDASYKFMMKALSDGGKLDE 281 (407)
Q Consensus 213 a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~----~~~~~~~l~~~~~~~g~~~~ 281 (407)
|...+++..+... .++ ..++..++..|...|++++|...++++.... .. ...++..+..+|...|++++
T Consensus 242 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 321 (338)
T 3ro2_A 242 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ 321 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 5555555442100 001 2244444455555555555555554444310 00 12233444444444444444
Q ss_pred HHHHHHHHHh
Q 015416 282 ILEIVGGILD 291 (407)
Q Consensus 282 A~~~~~~~~~ 291 (407)
|...++++..
T Consensus 322 A~~~~~~a~~ 331 (338)
T 3ro2_A 322 AMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.74 E-value=6.5e-17 Score=142.23 Aligned_cols=283 Identities=12% Similarity=0.067 Sum_probs=214.8
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccc
Q 015416 47 GVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMS-AVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLG 125 (407)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (407)
...+...+..+...|++++|+.+|+++++..++.++. ...+..+..++...|++++|...++++...............
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 3456667888999999999999999999876331110 467888999999999999999999987654211110111455
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHHcCC--------------------HHHHHH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRC-SPD----TLSFNNLIDQLCKNGM--------------------LAEAEE 180 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~a~~ 180 (407)
++..+...|...|++++|...+++...... .++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 788899999999999999999998765310 122 3378889999999999 999999
Q ss_pred HHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHH
Q 015416 181 LYGEMSDK----GVNP-DEYTYGLLMDACFEVNRVDDGATYFRKMVDSGL-RPN----LAVYNRLVGKLVQVGMLDEAKS 250 (407)
Q Consensus 181 ~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~ 250 (407)
.+++.... +..+ ...++..+...|...|++++|...++++.+... .++ ..++..++..+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99887542 1111 145788889999999999999999999874210 111 2378889999999999999999
Q ss_pred HHHHHHhcCC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCCcHHHHHHHHHHHhhcCcHHHHHH
Q 015416 251 FFDIMVKKLK--MD----DASYKFMMKALSDGGKLDEILEIVGGILDDG----GIEFSEELQEFVKGELSKEGREEEVVK 320 (407)
Q Consensus 251 ~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~ 320 (407)
++++.....+ .+ ..++..++.+|...|++++|...++++.... ........+..++.+|.+.|++++|..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 9999887211 12 5678889999999999999999999987642 111224477789999999999999999
Q ss_pred HHHHHHHhh
Q 015416 321 LMEKKEREK 329 (407)
Q Consensus 321 ~~~~~~~~~ 329 (407)
.+++.....
T Consensus 325 ~~~~a~~~~ 333 (338)
T 3ro2_A 325 FAEKHLEIS 333 (338)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 999987654
No 59
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=1.9e-17 Score=157.76 Aligned_cols=152 Identities=13% Similarity=0.096 Sum_probs=124.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 015416 158 DTLSFNNLIDQLCKNGMLAEAEELYGEMSD---KGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNR 234 (407)
Q Consensus 158 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 234 (407)
-..+|+++|.+|++.|++++|..+|.+|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..+|+.
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345899999999999999999999988764 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCH-HHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----CcHHHHHHHHHH
Q 015416 235 LVGKLVQVGML-DEAKSFFDIMVK-KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIE----FSEELQEFVKGE 308 (407)
Q Consensus 235 l~~~~~~~g~~-~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~~l~~~ 308 (407)
|+.++++.|+. ++|.++|++|.+ |..||..+|++++..+.+. ..++.++++...+..+ |...+...|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCcccCCCCCCcccccchHHHHHH
Confidence 99999999985 789999999999 9999999999998766653 4555555554433211 112233445555
Q ss_pred HhhcC
Q 015416 309 LSKEG 313 (407)
Q Consensus 309 ~~~~g 313 (407)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 65544
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.70 E-value=3e-14 Score=123.98 Aligned_cols=238 Identities=12% Similarity=0.052 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHHhc----CCh----hhHHHHHHHHHHhhCCccCCcchHHHHHHHHHH-------cCCH-------HHHH
Q 015416 10 PVVYSYLMLGFVRD----GDS----DGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFM-------KGME-------EEAM 67 (407)
Q Consensus 10 ~~~~~~li~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~ 67 (407)
...|...+....+. ++. ++|..+|++.... .|.++..|..++..+.. .|++ ++|.
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~---~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~ 84 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV---LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 84 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHH
Confidence 34566666654443 233 6777888888875 34577788887777653 4764 7888
Q ss_pred HHHHHHHh-CCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccc-hHHHHHHHHHhcCCHHHHHH
Q 015416 68 ECYNEAVG-ENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLG-SFNVMADGYCGQGRFKDAIE 145 (407)
Q Consensus 68 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~ 145 (407)
.+|++++. .. +.+...|..++..+...|++++|..+|+++++..+. +.. +|..++..+.+.|++++|..
T Consensus 85 ~~~~rAl~~~~---p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~~A~~ 155 (308)
T 2ond_A 85 NIYERAISTLL---KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI------DPTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHTTTT---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS------CTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHhC---cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc------CccHHHHHHHHHHHHhcCHHHHHH
Confidence 88888887 34 335667788888888888888888888888775432 333 67777788888888888888
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 015416 146 VFRKMGEYRCSPDTLSFNNLIDQLC-KNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSG 224 (407)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 224 (407)
+|++.++.. +++...|...+.... ..|++++|..+|+++++.. +.+...|..++..+...|++++|..+|++++...
T Consensus 156 ~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 233 (308)
T 2ond_A 156 IFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc
Confidence 888887754 344445543333322 2577788888887776642 2346667777777777777777777777777642
Q ss_pred -CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 015416 225 -LRP--NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKM 261 (407)
Q Consensus 225 -~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 261 (407)
++| ....|..++..+...|+.+.|..+++++.+..|.
T Consensus 234 ~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 343 3557777777777777777777777777764443
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.70 E-value=1.6e-15 Score=139.91 Aligned_cols=216 Identities=11% Similarity=0.020 Sum_probs=185.5
Q ss_pred CHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCH-HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 015416 99 KFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRF-KDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAE 177 (407)
Q Consensus 99 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 177 (407)
.+++++..++......+. +...+..+..+|...|++ ++|++.|++.++.. +.+...|..++.+|...|++++
T Consensus 83 ~~~~al~~l~~~~~~~~~------~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~ 155 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQV------EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTS 155 (474)
T ss_dssp HHHHHHHHHHHHHTTCCC------CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhccCch------hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 366777777776654432 667888899999999999 99999999998875 4567889999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc------
Q 015416 178 AEELYGEMSDKGVNPDEYTYGLLMDACFEV---------NRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQV------ 242 (407)
Q Consensus 178 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 242 (407)
|+..|+++++. .|+...+..+..+|... |++++|+..|+++++.. +.+...|..++.+|...
T Consensus 156 A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~ 232 (474)
T 4abn_A 156 AHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQ 232 (474)
T ss_dssp HHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhcc
Confidence 99999999984 57778888899999998 99999999999999853 44678999999999998
Q ss_pred --CCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHH
Q 015416 243 --GMLDEAKSFFDIMVKKLK---MDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEE 317 (407)
Q Consensus 243 --g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 317 (407)
|++++|...|++.....| .+...|..++.+|...|++++|+..|+++++.. +.+...+..+..++...|++++
T Consensus 233 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 233 NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PAWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999666 789999999999999999999999999999874 5667788899999999999999
Q ss_pred HHHHHHHHH
Q 015416 318 VVKLMEKKE 326 (407)
Q Consensus 318 A~~~~~~~~ 326 (407)
|+..+.++.
T Consensus 311 Ai~~~~~~~ 319 (474)
T 4abn_A 311 LLESKGKTK 319 (474)
T ss_dssp HHHHTTTCC
T ss_pred HHHHhcccc
Confidence 998877763
No 62
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.70 E-value=1.1e-14 Score=130.59 Aligned_cols=322 Identities=11% Similarity=0.003 Sum_probs=225.6
Q ss_pred CCcCHHHHHHHHHHH--HhcCChhhHHHHHHHHHHhhCCccCCc--chHHHHHHHH--HHcCCHHHHH---------HHH
Q 015416 6 FVADPVVYSYLMLGF--VRDGDSDGVFRLFEELKEKLGGVVSDG--VVYGSLMKGY--FMKGMEEEAM---------ECY 70 (407)
Q Consensus 6 ~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~l~~~~--~~~g~~~~A~---------~~~ 70 (407)
+.|+..+-+.|-.-| .+.+++++|..+++++.+.......|. ..|..++..- ...+.+..+. ..+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 456666666666666 789999999999999887633333333 2334443321 1112222222 566
Q ss_pred HHHHhCCCCCCC--chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHH
Q 015416 71 NEAVGENSSVKM--SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFR 148 (407)
Q Consensus 71 ~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 148 (407)
+.+........+ ....+...+..+...|++++|+..|+++.+.............++..++.+|...|+++.|+..+.
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 655432200000 011234456677899999999999999987532211111145578899999999999999999999
Q ss_pred HHhhCCC-CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 015416 149 KMGEYRC-SP-----DTLSFNNLIDQLCKNGMLAEAEELYGEMSDK----GVNP-DEYTYGLLMDACFEVNRVDDGATYF 217 (407)
Q Consensus 149 ~~~~~~~-~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 217 (407)
+...... .+ ...+++.++.+|...|++++|+..|++..+. +..+ ...++..+..+|...|++++|...+
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8765310 01 2447889999999999999999999988752 1111 1457888999999999999999999
Q ss_pred HHHHH-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHhcCC---HHHHHH
Q 015416 218 RKMVD-----SGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-----LKMDDASYKFMMKALSDGGK---LDEILE 284 (407)
Q Consensus 218 ~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~---~~~A~~ 284 (407)
++..+ .. +....++..++..|...|++++|...+++.... .+.....+..+...+...|+ +.+|+.
T Consensus 246 ~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~ 324 (378)
T 3q15_A 246 QKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324 (378)
T ss_dssp HHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 99886 33 333668899999999999999999999999882 22223456666677778888 888888
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHH
Q 015416 285 IVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAE 331 (407)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 331 (407)
.+++... .+.....+..++..|...|++++|...+++.......
T Consensus 325 ~~~~~~~---~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 368 (378)
T 3q15_A 325 YFEKKNL---HAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQED 368 (378)
T ss_dssp HHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCC---hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 8876322 2444557778999999999999999999998776544
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=8.4e-14 Score=121.15 Aligned_cols=220 Identities=12% Similarity=0.070 Sum_probs=176.6
Q ss_pred HHHHHHHHHHHhcCCCCCccccccchHHHHHHHHH-------hcCCH-------HHHHHHHHHHhh-CCCCCCHHHHHHH
Q 015416 101 DEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYC-------GQGRF-------KDAIEVFRKMGE-YRCSPDTLSFNNL 165 (407)
Q Consensus 101 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~~l 165 (407)
++|..+|++++...+. +...|..++..+. +.|++ ++|..+|++.+. .. +.+...|..+
T Consensus 33 ~~a~~~~~~al~~~p~------~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~ 105 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH------HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAY 105 (308)
T ss_dssp HHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC------CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 6778888888876544 5667777777765 35775 899999999988 33 4466789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hc
Q 015416 166 IDQLCKNGMLAEAEELYGEMSDKGVNPD-EY-TYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV-QV 242 (407)
Q Consensus 166 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 242 (407)
+..+...|++++|..+|+++++. .|+ .. .|..++..+.+.|++++|..+|+++++.. +++...|...+.... ..
T Consensus 106 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~ 182 (308)
T 2ond_A 106 ADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCS 182 (308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTS
T ss_pred HHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999984 454 33 78889999999999999999999999754 344555655444433 36
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--cHHHHHHHHHHHhhcCcHHHHHH
Q 015416 243 GMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEF--SEELQEFVKGELSKEGREEEVVK 320 (407)
Q Consensus 243 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 320 (407)
|++++|..+|++.++..|.+...|..++..+.+.|++++|+.+|++++....++| ....|..++..+.+.|+.++|..
T Consensus 183 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~ 262 (308)
T 2ond_A 183 KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 262 (308)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999997777899999999999999999999999999998633354 45688888888999999999999
Q ss_pred HHHHHHHhhH
Q 015416 321 LMEKKEREKA 330 (407)
Q Consensus 321 ~~~~~~~~~~ 330 (407)
+++++.+..+
T Consensus 263 ~~~~a~~~~p 272 (308)
T 2ond_A 263 VEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcc
Confidence 9998876553
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.69 E-value=7.7e-15 Score=117.43 Aligned_cols=165 Identities=17% Similarity=0.149 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHH
Q 015416 10 PVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNS 89 (407)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (407)
+.+|..+...|.+.|++++|++.|++..+. .|-++.+|..++.+|.+.|++++|+..+..+.... +.+...+..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~ 78 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKA---DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD---TTSAEAYYI 78 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---chhHHHHHH
Confidence 344455555555555555555555555543 12244445555555555555555555555554443 223444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 015416 90 VLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQL 169 (407)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 169 (407)
+...+...++++.|...+.+.....+. +..++..+..+|.+.|++++|++.|++.++.. |.+..+|..++.+|
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~------~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~ 151 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTV------YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAY 151 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcc------chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHH
Confidence 444555555555555555555444332 33344445555555555555555555544433 33344455555555
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 015416 170 CKNGMLAEAEELYGEMSD 187 (407)
Q Consensus 170 ~~~g~~~~a~~~~~~~~~ 187 (407)
.+.|++++|+..|+++++
T Consensus 152 ~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 152 EGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHh
Confidence 555555555555555444
No 65
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.68 E-value=2.7e-15 Score=138.48 Aligned_cols=215 Identities=15% Similarity=0.064 Sum_probs=190.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCH
Q 015416 62 MEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKF-DEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRF 140 (407)
Q Consensus 62 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 140 (407)
.+++++..++...... +.+...+..+..++...|++ ++|+..|+++++..+. +..+|..+..+|...|++
T Consensus 83 ~~~~al~~l~~~~~~~---~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~ 153 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA---QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE------LVEAWNQLGEVYWKKGDV 153 (474)
T ss_dssp HHHHHHHHHHHHHTTC---CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhccC---chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCH
Confidence 4677788888777654 55788999999999999999 9999999999988654 677999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----
Q 015416 141 KDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKN---------GMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEV---- 207 (407)
Q Consensus 141 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---- 207 (407)
++|+..|++.++.. |+...+..+..+|... |++++|+..|+++++.. +.+...|..+..+|...
T Consensus 154 ~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~ 230 (474)
T 4abn_A 154 TSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNT 230 (474)
T ss_dssp HHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhh
Confidence 99999999999875 7788999999999999 99999999999999853 33588899999999998
Q ss_pred ----CChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHH
Q 015416 208 ----NRVDDGATYFRKMVDSGLR---PNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLD 280 (407)
Q Consensus 208 ----g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 280 (407)
|++++|+..|+++.+.. + .+...|..++.+|...|++++|...|++.....|.+..++..+..++...|+++
T Consensus 231 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~ 309 (474)
T 4abn_A 231 GQNPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLT 309 (474)
T ss_dssp TCCHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999853 2 378899999999999999999999999999988888999999999999999999
Q ss_pred HHHHHHHHH
Q 015416 281 EILEIVGGI 289 (407)
Q Consensus 281 ~A~~~~~~~ 289 (407)
+|+..+.++
T Consensus 310 eAi~~~~~~ 318 (474)
T 4abn_A 310 SLLESKGKT 318 (474)
T ss_dssp HHHHHTTTC
T ss_pred HHHHHhccc
Confidence 998866543
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.67 E-value=4.9e-14 Score=112.69 Aligned_cols=167 Identities=13% Similarity=0.073 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 015416 158 DTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVG 237 (407)
Q Consensus 158 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 237 (407)
+..+|..++..|...|++++|+..|++.++.. +-+..++..+..+|...|++++|...+..+.... +.+...+..++.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 34445555555555555555555555555432 1234445555555555555555555555555432 223444555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHH
Q 015416 238 KLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEE 317 (407)
Q Consensus 238 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 317 (407)
.+...++++.|...+.+.....|.+..++..++.+|...|++++|++.|+++++.+ |.+...+..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc--chhhhHHHHHHHHHHHCCCHHH
Confidence 55555555555555555555444555555555555555555555555555555542 3444455555555555555555
Q ss_pred HHHHHHHHHHh
Q 015416 318 VVKLMEKKERE 328 (407)
Q Consensus 318 A~~~~~~~~~~ 328 (407)
|+..+++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 55555555443
No 67
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.67 E-value=2.9e-13 Score=133.42 Aligned_cols=313 Identities=16% Similarity=0.156 Sum_probs=215.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHH
Q 015416 14 SYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDA 93 (407)
Q Consensus 14 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (407)
...+.+|...|++.+|+++|+++.-.......+...-+.++.+..+. +..+..++.++.-... ...+...
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---------~~eIA~I 1058 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---------APDIANI 1058 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---------HHHHHHH
Confidence 45667888899999999999988853100112344555666666666 5566666666554211 3347777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 015416 94 LCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNG 173 (407)
Q Consensus 94 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 173 (407)
+...|.+++|..+|++... .....+.+ +-..+++++|.++.++. -+..+|..++.++...|
T Consensus 1059 ai~lglyEEAf~IYkKa~~----------~~~A~~VL---ie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV----------NTSAVQVL---IEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC----------HHHHHHHH---HHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCC
Confidence 8889999999999988631 11122223 23778899999888865 35778889999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015416 174 MLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFD 253 (407)
Q Consensus 174 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 253 (407)
++++|+..|.+. -|...|..++.+|.+.|++++|.++|....+.. ++......++.+|++.+++++...+.
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH-
Confidence 999999998664 367788889999999999999999999888743 34444446888999998888544332
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHHHH
Q 015416 254 IMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAEAK 333 (407)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 333 (407)
..++...+..++..|...|++++|..+|..+ ..|..++.+|.+.|++++|.+.+++......-..
T Consensus 1191 -----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWke 1255 (1630)
T 1xi4_A 1191 -----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKE 1255 (1630)
T ss_pred -----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHH
Confidence 2456677778999999999999999999985 3688899999999999999999988854432110
Q ss_pred -------HHHHHHHHHHH--HHHHHHHHhhcCCCcCCCccccccccccChhhHhhHHHHhcCcc
Q 015416 334 -------AREAEAAEAAK--RSARAAIASLIPSKFGDKVGGTEMADNANANEAASVAEAQAGKE 388 (407)
Q Consensus 334 -------~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~~~~ 388 (407)
..++..+.... -.........+...|...| .++||+.+.+...+.+
T Consensus 1256 v~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G---------~feEAI~LlE~aL~Le 1310 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRG---------YFEELITMLEAALGLE 1310 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHhccC
Confidence 00011000000 0001111223344466666 9999999998888776
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=7.5e-16 Score=134.06 Aligned_cols=172 Identities=17% Similarity=0.202 Sum_probs=99.8
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC------C
Q 015416 47 GVVYGSLMKGYFMKGMEEEAMECYNEAVGEN-----SSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEH------N 115 (407)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~ 115 (407)
..++..++..+...|++++|+.+|++++... +..+....++..+..+|...|++++|...|+++.... .
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 4456666666666777777777776666520 0013345556666667777777777777776665541 1
Q ss_pred CCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhC------CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 015416 116 PPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY------RC-SPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDK 188 (407)
Q Consensus 116 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 188 (407)
.+. ...++..+..+|...|++++|...|+++... +. +.....+..++..+...|++++|+.+|+++.+.
T Consensus 107 ~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 107 HPA----VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp CHH----HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred ChH----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 111 3445666666777777777777776666543 11 112335566666666677777777766666542
Q ss_pred ------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015416 189 ------GVNPD-EYTYGLLMDACFEVNRVDDGATYFRKMVD 222 (407)
Q Consensus 189 ------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 222 (407)
+..|. ..++..+..+|...|++++|..+++++.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11121 34555666666666666666666666654
No 69
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.65 E-value=2.5e-13 Score=133.95 Aligned_cols=281 Identities=15% Similarity=0.153 Sum_probs=157.6
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHH
Q 015416 16 LMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALC 95 (407)
Q Consensus 16 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (407)
+...+...|.+++|..+|++... .....+.++ -..+++++|.++.++.. +..+|..++.++.
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~-------~~~A~~VLi---e~i~nldrAiE~Aervn--------~p~vWsqLAKAql 1116 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV-------NTSAVQVLI---EHIGNLDRAYEFAERCN--------EPAVWSQLAKAQL 1116 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC-------HHHHHHHHH---HHHhhHHHHHHHHHhcC--------CHHHHHHHHHHHH
Confidence 34455556666666666655421 111111221 14455666666555431 2445666666666
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 015416 96 NNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGML 175 (407)
Q Consensus 96 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 175 (407)
..|++++|+..|.+.. +...|..++.+|.+.|++++|.++|....+.. ++....+.++.+|++.+++
T Consensus 1117 ~~G~~kEAIdsYiKAd-----------D~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rl 1183 (1630)
T 1xi4_A 1117 QKGMVKEAIDSYIKAD-----------DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRL 1183 (1630)
T ss_pred hCCCHHHHHHHHHhcC-----------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCH
Confidence 6666666666664431 44455666666666666666666666555433 2322233466666666665
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 176 AEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIM 255 (407)
Q Consensus 176 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 255 (407)
++...+. + .++...|..++..|...|++++|..+|..+ ..|..++..|.+.|++++|.+.+++.
T Consensus 1184 eele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1184 AELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred HHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 5432221 1 234445555666666666666666666653 25666666666666666666666655
Q ss_pred HhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHHH--H
Q 015416 256 VKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAEA--K 333 (407)
Q Consensus 256 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~ 333 (407)
. +..+|..+..+|...|++..|..+... +..++..+..++..|.+.|.+++|+.+++......... .
T Consensus 1248 ~-----n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gm 1316 (1630)
T 1xi4_A 1248 N-----STRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGM 1316 (1630)
T ss_pred C-----CHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHH
Confidence 2 446666666666666666666655442 23456667788888999999999999998876543222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 015416 334 AREAEAAEAAKRSARAAIASL 354 (407)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~ 354 (407)
...+.....+++|++..-+..
T Consensus 1317 ftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1317 FTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHH
Confidence 222444455566666554433
No 70
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.65 E-value=4.1e-15 Score=136.40 Aligned_cols=276 Identities=12% Similarity=0.046 Sum_probs=144.9
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCH---HHHHHHHHHHHhCCCCCCCchhhHHHHHH
Q 015416 16 LMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGME---EEAMECYNEAVGENSSVKMSAVANNSVLD 92 (407)
Q Consensus 16 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (407)
+...+.+.|++++|+++|++..+. + ++..+..|...|...|++ ++|+.+|+++... +...+..+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~--g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~------~~~A~~~Lg~ 77 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAEL--G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT------SPRAQARLGR 77 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--T---CCTGGGTCC----------------------------------CHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC------CHHHHHHHHH
Confidence 667778899999999999999886 4 666777888888888888 8999999998753 4566777777
Q ss_pred HHHhcC-----CHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHH---HHHHHHHHhhCCCCCCHHHHHH
Q 015416 93 ALCNNG-----KFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKD---AIEVFRKMGEYRCSPDTLSFNN 164 (407)
Q Consensus 93 ~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~ 164 (407)
++...+ ++++|+..|++..+.+.. .++..|...|...+...+ +.+.+......| +...+..
T Consensus 78 ~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~--------~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~ 146 (452)
T 3e4b_A 78 LLAAKPGATEAEHHEAESLLKKAFANGEG--------NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLA 146 (452)
T ss_dssp HHHTC--CCHHHHHHHHHHHHHHHHTTCS--------SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHH
T ss_pred HHHhCCCCCCcCHHHHHHHHHHHHHCCCH--------HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHH
Confidence 566655 788999999999886633 366777777766554333 333343333332 2334445
Q ss_pred HHHHHHHcCCHHHHHH----HHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 015416 165 LIDQLCKNGMLAEAEE----LYGEMSDKGVNPDEYTYGLLMDACFEVN---RVDDGATYFRKMVDSGLRPNLAVYNRLVG 237 (407)
Q Consensus 165 l~~~~~~~g~~~~a~~----~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 237 (407)
+...|...+.++++.. +++.... .++..+..+...|...| +.++|+..|++..+.| +++...+..|..
T Consensus 147 Lg~~y~~~~~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~ 221 (452)
T 3e4b_A 147 QVLLYRTQGTYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVAR 221 (452)
T ss_dssp HHHHHHHHTCGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHH
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHH
Confidence 5555555553333322 2222222 12225555555555555 5556666666666554 334444455555
Q ss_pred HHHhc----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHh
Q 015416 238 KLVQV----GMLDEAKSFFDIMVKKLKMDDASYKFMMKA-L--SDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELS 310 (407)
Q Consensus 238 ~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 310 (407)
.|... +++++|..+|++.. +.++..+..+... + ...+++++|+.+|++..+. .+...+..++.+|.
T Consensus 222 ~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~----g~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 222 VLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA----DQPRAELLLGKLYY 294 (452)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHH
T ss_pred HHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHH
Confidence 55443 45666666666655 3345555555555 2 3455666666666665543 13444445555554
Q ss_pred hcC-----cHHHHHHHHHHHH
Q 015416 311 KEG-----REEEVVKLMEKKE 326 (407)
Q Consensus 311 ~~g-----~~~~A~~~~~~~~ 326 (407)
.| ++++|..++++..
T Consensus 295 -~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 295 -EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp -HCSSSCCCHHHHHHHHHTTT
T ss_pred -cCCCCCCCHHHHHHHHHHHh
Confidence 33 5666666665554
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=2.7e-15 Score=130.51 Aligned_cols=248 Identities=15% Similarity=0.179 Sum_probs=176.6
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhC----
Q 015416 80 VKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPP--KRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY---- 153 (407)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 153 (407)
.+.+..++..++..+...|++++|..+|+++.+..... ........++..+..+|...|++++|..+|++....
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 35567788999999999999999999999988741000 000115567889999999999999999999998764
Q ss_pred --C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 015416 154 --R-CSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDK------GVNP-DEYTYGLLMDACFEVNRVDDGATYFRKMVDS 223 (407)
Q Consensus 154 --~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 223 (407)
+ .+....++..++..|...|++++|..+|+++.+. +..| ....+..+...|...|++++|..+++++.+.
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 1223557889999999999999999999998763 2222 3567888999999999999999999998863
Q ss_pred ------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCC-------HHHHHHHHHHHHhcCCHHH
Q 015416 224 ------GLRP-NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK--------LKMD-------DASYKFMMKALSDGGKLDE 281 (407)
Q Consensus 224 ------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~-------~~~~~~l~~~~~~~g~~~~ 281 (407)
+..| ...++..++..|...|++++|..+++++... ..+. ...+..+...+...+.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE 262 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 1122 2447888999999999999999999999861 1111 1222333334445566666
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 282 ILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 282 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
+...+...... .+.....+..++.+|.+.|++++|...+++..+..
T Consensus 263 a~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 263 YGGWYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp CC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 77777777654 25566688899999999999999999999987643
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.63 E-value=1.2e-14 Score=130.78 Aligned_cols=259 Identities=10% Similarity=-0.013 Sum_probs=192.0
Q ss_pred HHHHHHHHhhCCccCC----cchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CCchhhHHHHHHHHHhcCCHHHH
Q 015416 31 RLFEELKEKLGGVVSD----GVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSV---KMSAVANNSVLDALCNNGKFDEA 103 (407)
Q Consensus 31 ~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A 103 (407)
++++.+... ..+.+ ...+...+..+...|++++|+..|+++....... +....++..++.+|...|+++.|
T Consensus 85 ~~~~~i~~~--~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A 162 (383)
T 3ulq_A 85 DLLLEIDKK--QARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS 162 (383)
T ss_dssp HHHHHHHHH--THHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHhc--CCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 777776553 11111 1123347778889999999999999998752111 11456788999999999999999
Q ss_pred HHHHHHHHhcCCCCCc-cccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHHcCCHHH
Q 015416 104 LKLFDRMKNEHNPPKR-LAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRC-SPD----TLSFNNLIDQLCKNGMLAE 177 (407)
Q Consensus 104 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~ 177 (407)
...+.+..+....... ......+++.++.+|...|++++|+..|++...... .++ ..++..++.+|...|++++
T Consensus 163 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~ 242 (383)
T 3ulq_A 163 MDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED 242 (383)
T ss_dssp HHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHH
Confidence 9999998875333211 111345788999999999999999999998865310 012 2478889999999999999
Q ss_pred HHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---H
Q 015416 178 AEELYGEMSDK----GV-NPDEYTYGLLMDACFEVNRVDDGATYFRKMVDS----GLRPNLAVYNRLVGKLVQVGM---L 245 (407)
Q Consensus 178 a~~~~~~~~~~----~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~ 245 (407)
|+..|++..+. +. +....++..+..+|...|++++|...+++..+. +-+.....+..+...|...|+ +
T Consensus 243 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 322 (383)
T 3ulq_A 243 AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI 322 (383)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHH
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 99999998762 22 333677899999999999999999999998752 111122345778888899999 7
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 246 DEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 246 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
++|+.++++.. ..+.....+..++..|...|++++|...|+++...
T Consensus 323 ~~al~~~~~~~-~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 323 QGFFDFLESKM-LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCc-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 77888877762 22234557888999999999999999999998764
No 73
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.63 E-value=2.7e-13 Score=121.34 Aligned_cols=275 Identities=13% Similarity=0.071 Sum_probs=128.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCC--chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHH
Q 015416 53 LMKGYFMKGMEEEAMECYNEAVGENSSVKM--SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVM 130 (407)
Q Consensus 53 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l 130 (407)
....+...|++++|...+++++...+...+ ...++..+..++...|++++|...+++................++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 334444555555555555555544311100 011334444555555555555555555544321110000011224445
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--C--CHHHHHH
Q 015416 131 ADGYCGQGRFKDAIEVFRKMGEY----RCS--P-DTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVN--P--DEYTYGL 199 (407)
Q Consensus 131 ~~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--p--~~~~~~~ 199 (407)
...+...|++++|...+++.... +.+ | ....+..+...+...|++++|...+++....... + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 55556666666666655554331 111 1 1223444555566666666666666655432111 0 1234555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHH----HHHHHHHhcCCHHHHHHHHHHHHhcCCCC----HHHHHHH
Q 015416 200 LMDACFEVNRVDDGATYFRKMVDSGLRP--NLAVYN----RLVGKLVQVGMLDEAKSFFDIMVKKLKMD----DASYKFM 269 (407)
Q Consensus 200 l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l 269 (407)
+...+...|++++|...+++.......+ ...... ..+..+...|++++|..+++......+.+ ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 5555666666666666666554321011 111111 12233556666666666666555421111 1234455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcC---CCCCcH-HHHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 015416 270 MKALSDGGKLDEILEIVGGILDDG---GIEFSE-ELQEFVKGELSKEGREEEVVKLMEKKER 327 (407)
Q Consensus 270 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 327 (407)
...+...|++++|...++++.... +.++.. ..+..++.++...|+.++|...+++...
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 566666666666666666554421 111111 2444555566666666666666666544
No 74
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.63 E-value=2.2e-13 Score=124.88 Aligned_cols=193 Identities=10% Similarity=0.026 Sum_probs=149.4
Q ss_pred ccchHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhCCCCCCHH
Q 015416 123 NLGSFNVMADGYCGQG---RFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKN----GMLAEAEELYGEMSDKGVNPDEY 195 (407)
Q Consensus 123 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~ 195 (407)
++.++..|..+|...| ++++|++.|++....| +++...+..+...|... +++++|+..|++.. .| ++.
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~ 249 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPA 249 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STH
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHH
Confidence 3447888888998899 8999999999998887 56666667777777654 68999999999987 33 455
Q ss_pred HHHHHHHH-H--HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhcCCCCHHHHH
Q 015416 196 TYGLLMDA-C--FEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG-----MLDEAKSFFDIMVKKLKMDDASYK 267 (407)
Q Consensus 196 ~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~ 267 (407)
.+..+... | ...+++++|..+|++..+.| +...+..|...|. .| ++++|..+|++.. +.++..+.
T Consensus 250 a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~ 322 (452)
T 3e4b_A 250 SWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADY 322 (452)
T ss_dssp HHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHH
Confidence 66667776 4 46789999999999998865 6778888888887 45 8999999999887 66788888
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhh----cCcHHHHHHHHHHHHHhhHH
Q 015416 268 FMMKALSD----GGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSK----EGREEEVVKLMEKKEREKAE 331 (407)
Q Consensus 268 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 331 (407)
.+...|.. ..++++|..+|++..+.+ +......|+.+|.. ..+..+|..++++..+.+..
T Consensus 323 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 323 YLGQIYRRGYLGKVYPQKALDHLLTAARNG----QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp HHHHHHHTTTTSSCCHHHHHHHHHHHHTTT----CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHCCCCCCcCHHHHHHHHHHHHhhC----hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 88888877 348999999999988752 23445556666654 45888999998888766644
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.62 E-value=4.1e-13 Score=120.14 Aligned_cols=277 Identities=12% Similarity=0.046 Sum_probs=201.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCc-----chHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---Cch
Q 015416 13 YSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDG-----VVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVK---MSA 84 (407)
Q Consensus 13 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~ 84 (407)
+......+...|++++|...+++.... .+++. .+++.+...+...|++++|...++++....+... ...
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEE---LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT---CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc---CCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 344556777899999999999999885 23232 2567788889999999999999999886432111 112
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc--ccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC----CC
Q 015416 85 VANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL--AVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCS----PD 158 (407)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~ 158 (407)
.++..+...+...|++++|...+++..+........ .....++..+..++...|++++|...+++....... ..
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 345678888999999999999999987643211000 003346677889999999999999999988764311 12
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHH----HHHHHHHhcCChHHHHHHHHHHHHCCCCC---CH
Q 015416 159 TLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPD--EYTYG----LLMDACFEVNRVDDGATYFRKMVDSGLRP---NL 229 (407)
Q Consensus 159 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~ 229 (407)
..++..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+ ..
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 35678889999999999999999999875311111 11111 23345779999999999999987643211 13
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 230 AVYNRLVGKLVQVGMLDEAKSFFDIMVKK-----LKMDD-ASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 230 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
..+..+...+...|++++|...++..... .+++. .++..+..++...|+.++|...+++....
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35678889999999999999999998761 11122 36777888899999999999999998764
No 76
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.57 E-value=1e-13 Score=133.10 Aligned_cols=166 Identities=17% Similarity=0.123 Sum_probs=103.5
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccc
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLG 125 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (407)
++.+|+.|+.+|.+.|++++|+..|+++++.+ +-+..+|..+..+|.+.|++++|+..|+++++..+. +..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~---P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~------~~~ 78 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF---PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT------FAD 78 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHH
Confidence 45566666666666666666666666666655 334566666666666666666666666666665443 455
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACF 205 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 205 (407)
+|..+..+|...|++++|++.|++.++.. +.+...|+.++.+|...|++++|+..|+++++.. +-+...+..++.+|.
T Consensus 79 a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~ 156 (723)
T 4gyw_A 79 AYSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQ 156 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHH
Confidence 66666666666666666666666666554 3345566666666666666666666666666532 123556666666666
Q ss_pred hcCChHHHHHHHHHHHH
Q 015416 206 EVNRVDDGATYFRKMVD 222 (407)
Q Consensus 206 ~~g~~~~a~~~~~~~~~ 222 (407)
..|++++|.+.++++.+
T Consensus 157 ~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 157 IVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HTTCCTTHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHH
Confidence 66666666666665543
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.56 E-value=2.2e-13 Score=130.86 Aligned_cols=166 Identities=16% Similarity=0.109 Sum_probs=151.3
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHH
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANN 88 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
+...|+.|...|.+.|++++|+..|++..+. .|-+..+|+.++.+|.+.|++++|+..|+++++.+ +.+..+|.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l---~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~---P~~~~a~~ 81 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV---FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS---PTFADAYS 81 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHH
Confidence 4677999999999999999999999999996 34478899999999999999999999999999987 44788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 015416 89 SVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQ 168 (407)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 168 (407)
.+..+|...|++++|++.|+++++..+. +..+++.+..+|...|++++|++.|++.++.. +.+...|..++.+
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~P~------~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~ 154 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQINPA------FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHC 154 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhH
Confidence 9999999999999999999999998755 67799999999999999999999999999875 5567899999999
Q ss_pred HHHcCCHHHHHHHHHHHHh
Q 015416 169 LCKNGMLAEAEELYGEMSD 187 (407)
Q Consensus 169 ~~~~g~~~~a~~~~~~~~~ 187 (407)
+...|++++|.+.++++.+
T Consensus 155 l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 155 LQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHTTCCTTHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHH
Confidence 9999999999999988765
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.55 E-value=1.5e-12 Score=103.66 Aligned_cols=163 Identities=17% Similarity=0.131 Sum_probs=82.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACF 205 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 205 (407)
.+..++..+...|++++|...|+++.... +.+...+..++..+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 44455555555566666665555555432 3344455555555555555555555555555431 223444445555555
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015416 206 EVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEI 285 (407)
Q Consensus 206 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 285 (407)
..|++++|..+++++.+.. +.+...+..++..+...|++++|..+++++....+.+..++..++.++...|++++|...
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555555555555554432 233444445555555555555555555555444444444555555555555555555555
Q ss_pred HHHHHh
Q 015416 286 VGGILD 291 (407)
Q Consensus 286 ~~~~~~ 291 (407)
++++..
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.55 E-value=1.3e-12 Score=104.02 Aligned_cols=166 Identities=18% Similarity=0.114 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 015416 160 LSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKL 239 (407)
Q Consensus 160 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 239 (407)
..+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+..++..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 356667777778888888888888777642 3356677777788888888888888888877643 34566777778888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHH
Q 015416 240 VQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVV 319 (407)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 319 (407)
...|++++|..+++++....+.+...+..++.++...|++++|...++++.... +.+...+..++.++...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888888877666777778888888888888888888888877763 455667777788888888888888
Q ss_pred HHHHHHHHhh
Q 015416 320 KLMEKKEREK 329 (407)
Q Consensus 320 ~~~~~~~~~~ 329 (407)
..++++....
T Consensus 165 ~~~~~~~~~~ 174 (186)
T 3as5_A 165 PHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHcC
Confidence 8888776544
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.55 E-value=8.2e-13 Score=109.49 Aligned_cols=209 Identities=12% Similarity=0.024 Sum_probs=164.0
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhH
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVAN 87 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (407)
.|+..|......+...|++++|+..|++..+. ..+++...+..++.++...|++++|+..|++++..+ +.+..+|
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~ 79 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKL--TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN---YNLANAY 79 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CSHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC---cchHHHH
Confidence 46688889999999999999999999999996 322677888889999999999999999999999987 4478889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccccc-------chHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--C
Q 015416 88 NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL-------GSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSP--D 158 (407)
Q Consensus 88 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~ 158 (407)
..+..+|...|++++|+..|++..+..+. +. .+|..+...+...|++++|+..|++.++.. +. +
T Consensus 80 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 152 (228)
T 4i17_A 80 IGKSAAYRDMKNNQEYIATLTEGIKAVPG------NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWK 152 (228)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCccc
Confidence 99999999999999999999999988654 33 458889999999999999999999999864 23 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 015416 159 TLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVG 237 (407)
Q Consensus 159 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 237 (407)
...|..+..+|...| ..+++++...+ ..+...|.... ....+.+++|...|++..+.. +.+..+...+..
T Consensus 153 ~~~~~~l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l~~ 222 (228)
T 4i17_A 153 TDALYSLGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 567888888886554 44556666543 23344444333 334567899999999999853 334445544443
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.54 E-value=5.6e-13 Score=119.50 Aligned_cols=241 Identities=12% Similarity=0.014 Sum_probs=183.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccc-cccc
Q 015416 50 YGSLMKGYFMKGMEEEAMECYNEAVGENSSV---KMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLA-VNLG 125 (407)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~ 125 (407)
|...+..+...|++++|+..|+++....... +....++..++.+|...|+++.|...+.+..+......... ....
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 4456777889999999999999998753211 12356788899999999999999999999876533211100 1355
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEY----RCSP-DTLSFNNLIDQLCKNGMLAEAEELYGEMSD-----KGVNPDEY 195 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~ 195 (407)
+++.++.+|...|++++|++.|++.... +.++ ...++..++.+|...|++++|+..|++..+ .. +....
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHH
Confidence 7889999999999999999999987653 1111 134788899999999999999999999886 43 22377
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCHHHHHH
Q 015416 196 TYGLLMDACFEVNRVDDGATYFRKMVDSGL---RPN-LAVYNRLVGKLVQVGM---LDEAKSFFDIMVKKLKMDDASYKF 268 (407)
Q Consensus 196 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~ 268 (407)
++..+..+|.+.|++++|...+++..+... .+. ...+..+...|...++ +.+|+.+++... ..+.....+..
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~ 341 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHH
Confidence 888999999999999999999999986321 122 3456667777778888 778888777632 12223456788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 269 MMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 269 l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
++..|...|++++|...|+++...
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988763
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.54 E-value=2e-12 Score=107.14 Aligned_cols=196 Identities=7% Similarity=-0.023 Sum_probs=104.2
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 015416 81 KMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTL 160 (407)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 160 (407)
+.+...+...+..+...|++++|+..|+++++..+.+ +...+..++.++...|++++|+..|++..... +.+..
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 77 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ-----DSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLAN 77 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC-----CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHH
Confidence 3455566666666666666666666666666654433 44455556666666666666666666666543 23344
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HH
Q 015416 161 SFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDE-------YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPN---LA 230 (407)
Q Consensus 161 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~ 230 (407)
.|..++.+|...|++++|+..|++..+.. +.+. ..|..+...+...|++++|+..|+++++. .|+ ..
T Consensus 78 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 154 (228)
T 4i17_A 78 AYIGKSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTD 154 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHH
Confidence 56666666666666666666666665532 1123 33555555555666666666666666552 333 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 231 VYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 231 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
.+..++.+|...| ..+++.+....+.+...+.... ....+.+++|+..|+++++.
T Consensus 155 ~~~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 155 ALYSLGVLFYNNG-----ADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 5555555554332 2233333332223333332222 22234456666666666554
No 83
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.51 E-value=1.4e-12 Score=112.48 Aligned_cols=239 Identities=11% Similarity=0.008 Sum_probs=132.3
Q ss_pred hhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHc--C-CHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHH
Q 015416 27 DGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMK--G-MEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEA 103 (407)
Q Consensus 27 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 103 (407)
.+|.+++.+..+. .+++...| .++ +. + ++++|...|+++ +.+|...|++++|
T Consensus 2 ~~a~~~~~~a~k~---~~~~~~~~-~~~----~~~~~~~~~~A~~~~~~a-----------------~~~~~~~g~~~~A 56 (292)
T 1qqe_A 2 SDPVELLKRAEKK---GVPSSGFM-KLF----SGSDSYKFEEAADLCVQA-----------------ATIYRLRKELNLA 56 (292)
T ss_dssp CCHHHHHHHHHHH---SSCCCTHH-HHH----SCCSHHHHHHHHHHHHHH-----------------HHHHHHTTCTHHH
T ss_pred CcHHHHHHHHHHH---hCcCCCcc-hhc----CCCCCccHHHHHHHHHHH-----------------HHHHHHcCCHHHH
Confidence 3577777777775 33333333 222 22 2 477887777766 3356778888888
Q ss_pred HHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC----HHHHHHHHHHHHHc-CCHHH
Q 015416 104 LKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCS-PD----TLSFNNLIDQLCKN-GMLAE 177 (407)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~-g~~~~ 177 (407)
...|.+..+.............+|+.+..+|...|++++|+..|++.+..... .+ ..+++.+..+|... |++++
T Consensus 57 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~ 136 (292)
T 1qqe_A 57 GDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAK 136 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHH
Confidence 88888776642111100002457777888888888888888887776543100 01 23566666677664 77777
Q ss_pred HHHHHHHHHhCCCCC-C----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHH
Q 015416 178 AEELYGEMSDKGVNP-D----EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNL------AVYNRLVGKLVQVGMLD 246 (407)
Q Consensus 178 a~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~ 246 (407)
|+..|++.++..... + ..++..+...|...|++++|+..|+++.+....... ..+..++.++...|+++
T Consensus 137 A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 216 (292)
T 1qqe_A 137 AIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAV 216 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHH
Confidence 777777665421000 1 234556666666666666666666666653221111 14555566666666666
Q ss_pred HHHHHHHHHHhcCCCCH-----HHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 015416 247 EAKSFFDIMVKKLKMDD-----ASYKFMMKALS--DGGKLDEILEIVGGIL 290 (407)
Q Consensus 247 ~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~--~~g~~~~A~~~~~~~~ 290 (407)
+|...|++.....|... ..+..++.+|. ..+++++|+..|+++.
T Consensus 217 ~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 217 AAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 66666666655222111 12333344443 2445666666655543
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.49 E-value=3.2e-13 Score=115.46 Aligned_cols=164 Identities=21% Similarity=0.144 Sum_probs=127.3
Q ss_pred HHhcCChhhHHHHHHHHHHhhC-----CccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCCCchhhHHH
Q 015416 20 FVRDGDSDGVFRLFEELKEKLG-----GVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGEN-----SSVKMSAVANNS 89 (407)
Q Consensus 20 ~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~ 89 (407)
....|++++|+.+|++..+... ..+....++..++.+|...|++++|+..|++++... ++.+....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 3567888999988888877421 123356788999999999999999999999988651 112445678899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC-----C-CCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhC------C-CC
Q 015416 90 VLDALCNNGKFDEALKLFDRMKNEH-----N-PPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY------R-CS 156 (407)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~~~~~~-----~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~-~~ 156 (407)
+..+|...|++++|...|.++.... . .|. ...++..+..+|...|++++|..+|++.... + .+
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD----VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 9999999999999999999988752 1 111 4668889999999999999999999988764 1 11
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015416 157 PDTLSFNNLIDQLCKNGMLAEAEELYGEMSD 187 (407)
Q Consensus 157 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 187 (407)
....++..++.+|...|++++|..+|+++.+
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2345788888899999999999999988875
No 85
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.47 E-value=3.3e-12 Score=108.19 Aligned_cols=191 Identities=10% Similarity=-0.009 Sum_probs=122.0
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhH
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVAN 87 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (407)
.+...+-.+...+.+.|++++|+..|+.+.+..|+.+....++..++.+|...|++++|+..|++++...|+.+....++
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 35566777888888999999999999999886332111267888899999999999999999999998765434445677
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 015416 88 NSVLDALCN--------NGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDT 159 (407)
Q Consensus 88 ~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 159 (407)
..+..++.. .|++++|+..|+++++..+. +......+.......+ . -.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~a~~~~~~~~~----------~--------~~ 148 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN------HELVDDATQKIRELRA----------K--------LA 148 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT------CTTHHHHHHHHHHHHH----------H--------HH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC------chhHHHHHHHHHHHHH----------H--------HH
Confidence 788888888 89999999999999887654 2223322111000000 0 01
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHH
Q 015416 160 LSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNP--DEYTYGLLMDACFEV----------NRVDDGATYFRKMVD 222 (407)
Q Consensus 160 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~ 222 (407)
..+..++..|...|++++|+..|+++++..... ....+..+..+|... |++++|...|+++.+
T Consensus 149 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 149 RKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 113445555666666666666666655421110 123455555555544 555666666666665
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.46 E-value=3.3e-12 Score=108.22 Aligned_cols=106 Identities=17% Similarity=0.095 Sum_probs=76.4
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccccc
Q 015416 45 SDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNL 124 (407)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (407)
.++..+..++..+.+.|++++|+..|++++...|..+....++..++.+|...|++++|+..|+++++..+.... ..
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~ 89 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR---VP 89 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT---HH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch---hH
Confidence 356677778888888888888888888888876432222667778888888888888888888888887653211 33
Q ss_pred chHHHHHHHHHh--------cCCHHHHHHHHHHHhhC
Q 015416 125 GSFNVMADGYCG--------QGRFKDAIEVFRKMGEY 153 (407)
Q Consensus 125 ~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~ 153 (407)
.++..+..++.. .|++++|+..|++++..
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 456667777777 77777777777776664
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.46 E-value=1.4e-12 Score=111.39 Aligned_cols=232 Identities=15% Similarity=0.143 Sum_probs=161.1
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC--CCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhC------CC-CCCHHHHHHH
Q 015416 95 CNNGKFDEALKLFDRMKNEHNP--PKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY------RC-SPDTLSFNNL 165 (407)
Q Consensus 95 ~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l 165 (407)
...|++++|+..|++.++.-.. .........++..+..+|...|++++|+..|++.... +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777888877777653100 0000115668889999999999999999999998764 21 2234578899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHH
Q 015416 166 IDQLCKNGMLAEAEELYGEMSDK------GVNP-DEYTYGLLMDACFEVNRVDDGATYFRKMVDS------GLRP-NLAV 231 (407)
Q Consensus 166 ~~~~~~~g~~~~a~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~ 231 (407)
+..|...|++++|..+|+++.+. ...| ...++..+...|...|++++|..+++++.+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998763 1112 3667888999999999999999999998864 1122 2458
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhcCCCC
Q 015416 232 YNRLVGKLVQVGMLDEAKSFFDIMVKK---------LKMDDASYKFMMKALSDGGK------LDEILEIVGGILDDGGIE 296 (407)
Q Consensus 232 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~~ 296 (407)
+..++..|...|++++|..+++++... .+.....+..+...+...+. +..+...++..... .+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 249 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD--SP 249 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC--CH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC--CH
Confidence 889999999999999999999998872 22233344444444444333 33333333333221 23
Q ss_pred CcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh
Q 015416 297 FSEELQEFVKGELSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 297 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 328 (407)
.....+..++.+|.+.|++++|..++++..+.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34457888999999999999999999987654
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.42 E-value=3e-12 Score=110.38 Aligned_cols=214 Identities=12% Similarity=0.098 Sum_probs=154.5
Q ss_pred ChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCC-chhhHHHHHHHHHhcCCHH
Q 015416 25 DSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSS--VKM-SAVANNSVLDALCNNGKFD 101 (407)
Q Consensus 25 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~-~~~~~~~l~~~~~~~~~~~ 101 (407)
++++|...|++. +..|...|++++|+..|+++....+. .++ ...+|+.+..+|...|+++
T Consensus 32 ~~~~A~~~~~~a-----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 94 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV 94 (292)
T ss_dssp HHHHHHHHHHHH-----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 366777766655 44677889999999999988764210 111 2568889999999999999
Q ss_pred HHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCC-CC----HHHHHHHHHHHHHcCCH
Q 015416 102 EALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQ-GRFKDAIEVFRKMGEYRCS-PD----TLSFNNLIDQLCKNGML 175 (407)
Q Consensus 102 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~ 175 (407)
+|+..|++.++..+..........+++.+..+|... |++++|+..|++.+..... .+ ..++..++..+...|++
T Consensus 95 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 999999998875432111111234788899999996 9999999999998764210 11 35688899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHH--h
Q 015416 176 AEAEELYGEMSDKGVNPDE------YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLA------VYNRLVGKLV--Q 241 (407)
Q Consensus 176 ~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~--~ 241 (407)
++|+..|+++.+....... ..|..++.++...|++++|...|++.++ +.|+.. .+..++..|. .
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~ 252 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGD 252 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCC
Confidence 9999999999885432221 1577788899999999999999999986 334322 3445566664 4
Q ss_pred cCCHHHHHHHHHHHHh
Q 015416 242 VGMLDEAKSFFDIMVK 257 (407)
Q Consensus 242 ~g~~~~A~~~~~~~~~ 257 (407)
.+++++|+..|+.+..
T Consensus 253 ~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 253 SEQLSEHCKEFDNFMR 268 (292)
T ss_dssp TTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhccCCc
Confidence 5678888888877654
No 89
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.42 E-value=1e-11 Score=101.23 Aligned_cols=75 Identities=16% Similarity=0.202 Sum_probs=36.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 015416 90 VLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQL 169 (407)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 169 (407)
+..+|.+.|++++|+..|++.++..|. +..++..+..+|...|++++|+..|++.++.. |.+..+|..++.+|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN------NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 444455555555555555555544332 33444555555555555555555555554443 23344444444444
Q ss_pred HH
Q 015416 170 CK 171 (407)
Q Consensus 170 ~~ 171 (407)
..
T Consensus 133 ~~ 134 (208)
T 3urz_A 133 YL 134 (208)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 90
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.41 E-value=1.7e-11 Score=99.85 Aligned_cols=175 Identities=11% Similarity=0.042 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHH----------------HHHHHHHcCCHHHHHHHHHHH
Q 015416 10 PVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGS----------------LMKGYFMKGMEEEAMECYNEA 73 (407)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~ 73 (407)
...+-.....+...|++++|+..|++..+. .|.++..|.. ++.+|.+.|++++|+..|+++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 80 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL---NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL 80 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344455667788999999999999999986 3346667777 999999999999999999999
Q ss_pred HhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCC--HHHHHHHHHHHh
Q 015416 74 VGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGR--FKDAIEVFRKMG 151 (407)
Q Consensus 74 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~ 151 (407)
++.+ |.+...+..+..++...|++++|+..|+++++..|. +..++..+..+|...|+ ...+...+....
T Consensus 81 l~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~ 151 (208)
T 3urz_A 81 LQKA---PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD------NLAANIFLGNYYYLTAEQEKKKLETDYKKLS 151 (208)
T ss_dssp HHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 9987 557889999999999999999999999999998765 67789999998877654 344556666654
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 015416 152 EYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLL 200 (407)
Q Consensus 152 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 200 (407)
. ..|....+..+..++...|++++|+..|+++++ ..|+......+
T Consensus 152 ~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l 196 (208)
T 3urz_A 152 S--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTL 196 (208)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHH
T ss_pred C--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHH
Confidence 3 123333455567777788999999999999988 46775544433
No 91
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.41 E-value=4.5e-11 Score=98.70 Aligned_cols=190 Identities=9% Similarity=-0.011 Sum_probs=130.6
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHH
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANN 88 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
+...+..+...+.+.|++++|+..|+.+.+..|..+.....+..++.++.+.|++++|+..|+++++..|+.+.-..++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 44556667788999999999999999999863332222467888999999999999999999999988754222223555
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 89 SVLDALCN------------------NGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKM 150 (407)
Q Consensus 89 ~l~~~~~~------------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 150 (407)
.+..++.. .|++++|+..|+++++..|. +..++..+.... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~------~~~a~~a~~~l~----------~~~~~~ 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN------SQYTTDATKRLV----------FLKDRL 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT------CTTHHHHHHHHH----------HHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC------ChhHHHHHHHHH----------HHHHHH
Confidence 56666554 57889999999999887654 222332211110 000000
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 015416 151 GEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPD----EYTYGLLMDACFEVNRVDDGATYFRKMVDSG 224 (407)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 224 (407)
......++..|.+.|++++|+..|+++++. .|+ ...+..+..+|.+.|++++|.+.++.+...+
T Consensus 147 --------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 --------AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp --------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred --------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 011234567778888888888888888764 233 2457778888888888888888888777643
No 92
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.37 E-value=1e-10 Score=95.59 Aligned_cols=174 Identities=11% Similarity=0.004 Sum_probs=129.0
Q ss_pred hHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcC----CHHHH
Q 015416 28 GVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNG----KFDEA 103 (407)
Q Consensus 28 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A 103 (407)
+|++.|++..+. + ++.++..|...|...+++++|+.+|+++.+.+ +..++..|..+|.. + ++++|
T Consensus 4 eA~~~~~~aa~~--g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-----~~~a~~~lg~~y~~-~g~~~~~~~A 72 (212)
T 3rjv_A 4 EPGSQYQQQAEA--G---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-----DGDALALLAQLKIR-NPQQADYPQA 72 (212)
T ss_dssp CTTHHHHHHHHT--T---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHTTS-STTSCCHHHH
T ss_pred hHHHHHHHHHHC--C---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHc-CCCCCCHHHH
Confidence 566777777765 4 77788888888888888888888888888765 46677777777776 5 78888
Q ss_pred HHHHHHHHhcCCCCCccccccchHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHH----c
Q 015416 104 LKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCG----QGRFKDAIEVFRKMGEYRCSPD---TLSFNNLIDQLCK----N 172 (407)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~ 172 (407)
+..|++..+.+ +..++..|..+|.. .+++++|+.+|++..+.| ++ ...+..|...|.. .
T Consensus 73 ~~~~~~A~~~g--------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g~~ 142 (212)
T 3rjv_A 73 RQLAEKAVEAG--------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVHGP 142 (212)
T ss_dssp HHHHHHHHHTT--------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSSSS
T ss_pred HHHHHHHHHCC--------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCCCC
Confidence 88888887664 45577778888877 778888888888888765 32 6677778888877 6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHHCC
Q 015416 173 GMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEV-N-----RVDDGATYFRKMVDSG 224 (407)
Q Consensus 173 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~ 224 (407)
+++++|+..|++..+. ..+...+..+...|... | ++++|..+|+...+.|
T Consensus 143 ~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 143 EDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp CCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7788888888888765 23444666677776543 2 6788888888877765
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.36 E-value=1.2e-11 Score=119.11 Aligned_cols=131 Identities=12% Similarity=-0.023 Sum_probs=60.6
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 015416 83 SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSF 162 (407)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 162 (407)
+...+..+..++...|++++|+..|+++.+..+. +..+|..+..+|...|++++|+..|++.++.. +.+...|
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~ 504 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAERVGW------RWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPK 504 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHH
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 3344444444444455555555555544444322 33344444444555555555555554444433 2234444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015416 163 NNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVD 222 (407)
Q Consensus 163 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 222 (407)
..+..+|...|++++ +..|+++++.+ +.+...|..+..++...|++++|...|+++.+
T Consensus 505 ~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 505 LALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp HHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred HHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc
Confidence 444444555555555 44554444421 11234444444555555555555555554444
No 94
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.34 E-value=3.7e-12 Score=97.90 Aligned_cols=141 Identities=9% Similarity=-0.021 Sum_probs=68.2
Q ss_pred HHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCC
Q 015416 20 FVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGK 99 (407)
Q Consensus 20 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 99 (407)
+...|++++|+..+...... .+.++..+..++.+|.+.|++++|++.|+++++.+ |.+..+|..+..+|...|+
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~---~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS---PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ---ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS---HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTC
T ss_pred HHHcChHHHHHHHHHHhccc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCc
Confidence 33445555555555544431 22234444455555555555555555555555544 2344555555555555555
Q ss_pred HHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHH-HHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 015416 100 FDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEV-FRKMGEYRCSPDTLSFNNLIDQLCKNG 173 (407)
Q Consensus 100 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g 173 (407)
+++|+..|+++++..+. +..++..+..+|.+.|++++|.+. +++.++.. |.+..+|......+...|
T Consensus 81 ~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT------QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 55555555555554433 344555555555555555443332 34444432 233444444444444333
No 95
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.34 E-value=1.4e-09 Score=92.99 Aligned_cols=236 Identities=9% Similarity=0.025 Sum_probs=174.4
Q ss_pred HcCC-HHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHH-
Q 015416 59 MKGM-EEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNG--KFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGY- 134 (407)
Q Consensus 59 ~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 134 (407)
+.|. .++|+.+++.++..+ |-+..+|+.-..++...+ ++++++..++.++...+. +..+|+.-..++
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n---P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk------~y~aW~~R~~iL~ 114 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL---ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK------NYQIWNYRQLIIG 114 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT------CCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC---cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc------cHHHHHHHHHHHH
Confidence 3444 468888888888877 446777888777788888 889999999988887665 566777666665
Q ss_pred ---Hhc---CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015416 135 ---CGQ---GRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLA--EAEELYGEMSDKGVNPDEYTYGLLMDACFE 206 (407)
Q Consensus 135 ---~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 206 (407)
... +++++++.+++.+++.. +.+..+|+.-.-++.+.|.++ +++++++++++.+. -+...|+.....+..
T Consensus 115 ~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~ 192 (306)
T 3dra_A 115 QIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFS 192 (306)
T ss_dssp HHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHS
T ss_pred HHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHh
Confidence 555 78889999999888865 567888888888888888888 88888888887643 366777777767666
Q ss_pred cCC------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcC---CCCHHHHHHHHHHHHhc
Q 015416 207 VNR------VDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDE-AKSFFDIMVKKL---KMDDASYKFMMKALSDG 276 (407)
Q Consensus 207 ~g~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~ 276 (407)
.+. ++++++.+.+++... +-|...|+.+...+.+.|+... +..+..++.... +.++..+..++.+|.+.
T Consensus 193 l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~ 271 (306)
T 3dra_A 193 KKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQ 271 (306)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHT
T ss_pred ccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcc
Confidence 666 788888888888754 4577788888888888887444 555666655522 55778888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Q 015416 277 GKLDEILEIVGGILDDGGIEFSEELQEFVKG 307 (407)
Q Consensus 277 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 307 (407)
|+.++|+++++.+.+.. -|.....|...+.
T Consensus 272 ~~~~~A~~~~~~l~~~~-Dpir~~yW~~~~~ 301 (306)
T 3dra_A 272 KKYNESRTVYDLLKSKY-NPIRSNFWDYQIS 301 (306)
T ss_dssp TCHHHHHHHHHHHHHTT-CGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcc-ChHHHHHHHHHHh
Confidence 99999999999888642 1444445554443
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.34 E-value=9.1e-11 Score=113.08 Aligned_cols=174 Identities=9% Similarity=-0.047 Sum_probs=121.8
Q ss_pred HhcCCHHHHHHHHHHHH--------hcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015416 95 CNNGKFDEALKLFDRMK--------NEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLI 166 (407)
Q Consensus 95 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 166 (407)
...|++++|++.|+++. +..+. +...+..+..+|...|++++|+..|+++++.. +.+...|..++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg 474 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE------SVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRA 474 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT------CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc------chhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHH
Confidence 56777888888888777 33322 55577777777888888888888887777654 45666777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 015416 167 DQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLD 246 (407)
Q Consensus 167 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 246 (407)
.+|...|++++|+..|+++++.. +-+...+..+..+|...|++++ +..|+++++.. +.+...|..++.++...|+++
T Consensus 475 ~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~ 551 (681)
T 2pzi_A 475 VAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRV 551 (681)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHH
Confidence 77888888888888888777642 2245667777777777888877 77777777643 335667777777788888888
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 015416 247 EAKSFFDIMVKKLKMDDASYKFMMKALSDGGK 278 (407)
Q Consensus 247 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 278 (407)
+|...|+++.+..|.+...+..+..++...++
T Consensus 552 ~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 552 GAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 88888777777555566677777777766544
No 97
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.33 E-value=1e-09 Score=93.06 Aligned_cols=178 Identities=10% Similarity=0.124 Sum_probs=101.6
Q ss_pred HHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 015416 103 ALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRC-SPDTLSFNNLIDQLCKNGMLAEAEEL 181 (407)
Q Consensus 103 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~ 181 (407)
|+..|++....+.. +..++..++.++...|++++|++++.+.+..+. .-+...+..++..+.+.|+++.|.+.
T Consensus 85 a~~~l~~l~~~~~~------~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~ 158 (310)
T 3mv2_B 85 NIEELENLLKDKQN------SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTI 158 (310)
T ss_dssp CCHHHHHTTTTSCC------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCC------CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 55666665544311 223345666666777777777777766655441 12445566666677777777777777
Q ss_pred HHHHHhCCCCC-----CHHHHHHHHHHH--HhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015416 182 YGEMSDKGVNP-----DEYTYGLLMDAC--FEVN--RVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFF 252 (407)
Q Consensus 182 ~~~~~~~~~~p-----~~~~~~~l~~~~--~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 252 (407)
+++|.+ ..| +..+...++.++ ...| ++.+|..+|+++.+. .|+......+..++.+.|++++|...+
T Consensus 159 l~~~~~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 159 FDNYTN--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIV 234 (310)
T ss_dssp HHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHh--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHH
Confidence 777665 344 244444555442 2223 666777777776543 344223333333666677777777777
Q ss_pred HHHHhc----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 253 DIMVKK----------LKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 253 ~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
+.+.+. .+.++.++..++......|+ +|.++++++.+.
T Consensus 235 ~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 235 ELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 655542 24456666566655555665 666666666664
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.33 E-value=8.2e-11 Score=88.08 Aligned_cols=127 Identities=25% Similarity=0.385 Sum_probs=52.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHH
Q 015416 50 YGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNV 129 (407)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (407)
|..++..+...|++++|+.+|+++...+ +.+...+..++..+...|++++|...|+++....+. +...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~ 74 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD---PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SAEAWYN 74 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC---CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC------chHHHHH
Confidence 3334444444444444444444444332 223333444444444444444444444444433221 2223334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015416 130 MADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMS 186 (407)
Q Consensus 130 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 186 (407)
++.++...|++++|.++++++.... +.+...+..++..+...|++++|...++++.
T Consensus 75 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 75 LGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4444444444444444444443332 2233334444444444444444444444443
No 99
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.33 E-value=1.7e-10 Score=95.25 Aligned_cols=193 Identities=10% Similarity=-0.038 Sum_probs=133.5
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccc
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLG 125 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (407)
++..+..++..+.+.|++++|+..|++++...|..+.....+..++.+|.+.|++++|+..|+++++..+.... -..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~---~~~ 79 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN---IDY 79 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT---HHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc---HHH
Confidence 45567788889999999999999999999876543333567888999999999999999999999988765311 112
Q ss_pred hHHHHHHHHHh------------------cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015416 126 SFNVMADGYCG------------------QGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSD 187 (407)
Q Consensus 126 ~~~~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 187 (407)
++..+..++.. .|++++|+..|+++++.. |.+...+....... .+...+
T Consensus 80 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~-- 146 (225)
T 2yhc_A 80 VMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRL-- 146 (225)
T ss_dssp HHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHH--
T ss_pred HHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHH--
Confidence 45555555554 456666666666666543 22222222111100 000000
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 015416 188 KGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPN-L---AVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMD 262 (407)
Q Consensus 188 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 262 (407)
......+...|.+.|++++|...|+++++. .|+ . ..+..++.+|.+.|++++|...++.+....|.+
T Consensus 147 ------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 ------AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp ------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred ------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 011235678899999999999999999975 333 2 478889999999999999999999888744433
No 100
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.31 E-value=2.4e-10 Score=85.44 Aligned_cols=128 Identities=19% Similarity=0.248 Sum_probs=64.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 015416 162 FNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQ 241 (407)
Q Consensus 162 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 241 (407)
|..++..+...|++++|..+++++.+.. +.+...+..++..+...|++++|..+++++...+ +.+...+..++..+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 4445555555555555555555554432 2234444455555555555555555555555432 2234445555555555
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 242 VGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 242 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
.|++++|..+++.+....+.+..++..++.++...|++++|...++++..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 55555555555555544444444555555555555555555555555444
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.30 E-value=1.5e-11 Score=94.52 Aligned_cols=145 Identities=12% Similarity=0.044 Sum_probs=81.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHH
Q 015416 53 LMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMAD 132 (407)
Q Consensus 53 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (407)
|+.++...|++++|+..++...... +.+...+..+..+|.+.|++++|++.|+++++..+. +..+|..+..
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~---p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~------~~~a~~~lg~ 73 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP---RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER------DPKAHRFLGL 73 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH---HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHH
Confidence 3444455566666666666665543 334445556666666666666666666666665543 4556666666
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 015416 133 GYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEEL-YGEMSDKGVNPDEYTYGLLMDACFEVN 208 (407)
Q Consensus 133 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~g 208 (407)
+|...|++++|+..|++.++.. |.+...|..++..|.+.|++++|... ++++++.. +-++.+|......+...|
T Consensus 74 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 74 LYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 6666666666666666666654 33455666666666666666554443 35555531 123444554444444444
No 102
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.30 E-value=5.7e-10 Score=91.07 Aligned_cols=173 Identities=12% Similarity=0.014 Sum_probs=88.5
Q ss_pred HHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcC----CHH
Q 015416 66 AMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQG----RFK 141 (407)
Q Consensus 66 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~ 141 (407)
|+++|+++.+.+ +..++..+...|...+++++|+..|++..+.+ ++.++..|..+|.. + +++
T Consensus 5 A~~~~~~aa~~g-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--------~~~a~~~lg~~y~~-~g~~~~~~ 70 (212)
T 3rjv_A 5 PGSQYQQQAEAG-----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--------DGDALALLAQLKIR-NPQQADYP 70 (212)
T ss_dssp TTHHHHHHHHTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHTTS-STTSCCHH
T ss_pred HHHHHHHHHHCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHc-CCCCCCHH
Confidence 455555555544 44555555666666666666666666665543 33355555555555 4 566
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----cCChHH
Q 015416 142 DAIEVFRKMGEYRCSPDTLSFNNLIDQLCK----NGMLAEAEELYGEMSDKGVN-PDEYTYGLLMDACFE----VNRVDD 212 (407)
Q Consensus 142 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~ 212 (407)
+|+.+|++..+.| +...+..|...|.. .+++++|+.+|++..+.|.. ..+..+..|...|.. .+++++
T Consensus 71 ~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 71 QARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 6666666655533 44555555555554 45555555555555553311 013444455555554 445555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHh
Q 015416 213 GATYFRKMVDSGLRPNLAVYNRLVGKLVQV-G-----MLDEAKSFFDIMVK 257 (407)
Q Consensus 213 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~ 257 (407)
|..+|++..+. ..+...+..|...|... | ++++|..+|++..+
T Consensus 148 A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 148 ASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 55555555543 12233444444444432 1 45555555555444
No 103
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.30 E-value=3.6e-09 Score=90.52 Aligned_cols=239 Identities=10% Similarity=0.029 Sum_probs=190.6
Q ss_pred HHHHhcCCh-hhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHH
Q 015416 18 LGFVRDGDS-DGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKG--MEEEAMECYNEAVGENSSVKMSAVANNSVLDAL 94 (407)
Q Consensus 18 ~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (407)
.+..+.|.+ ++|+.+++.++.. .|-+..+|+.-..++...| ++++++.+++.++..+ |.+..+|+.-..++
T Consensus 40 ~a~~~~~e~s~~aL~~t~~~L~~---nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n---Pk~y~aW~~R~~iL 113 (306)
T 3dra_A 40 LALMKAEEYSERALHITELGINE---LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN---EKNYQIWNYRQLII 113 (306)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC---TTCCHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHH---CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC---cccHHHHHHHHHHH
Confidence 333455555 6899999999996 3447778999999999989 9999999999999987 44666776655555
Q ss_pred ----Hhc---CCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHH--HHHHHHHHHhhCCCCCCHHHHHHH
Q 015416 95 ----CNN---GKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFK--DAIEVFRKMGEYRCSPDTLSFNNL 165 (407)
Q Consensus 95 ----~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l 165 (407)
... +++++++.+++.+.+..+. +..+|+.-..++.+.|.++ ++++.++++++.. +.|...|+..
T Consensus 114 ~~~~~~l~~~~~~~~EL~~~~~~l~~~pk------ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R 186 (306)
T 3dra_A 114 GQIMELNNNDFDPYREFDILEAMLSSDPK------NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHR 186 (306)
T ss_dssp HHHHHHTTTCCCTHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHhccccCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 555 7899999999999998766 7788998888999999988 9999999999876 5688889888
Q ss_pred HHHHHHcCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHCC--CCCCHHHHHHHH
Q 015416 166 IDQLCKNGM------LAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDD-GATYFRKMVDSG--LRPNLAVYNRLV 236 (407)
Q Consensus 166 ~~~~~~~g~------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~ 236 (407)
...+...+. ++++++.+++++... +-|...|+.+...+.+.|+... +..+..++.+.+ -+.+...+..++
T Consensus 187 ~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la 265 (306)
T 3dra_A 187 FFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLA 265 (306)
T ss_dssp HHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHH
T ss_pred HHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHH
Confidence 888877776 899999999998864 3478888888888888888444 556777666432 134778999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc-CCCCHHHHHHHH
Q 015416 237 GKLVQVGMLDEAKSFFDIMVKK-LKMDDASYKFMM 270 (407)
Q Consensus 237 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~ 270 (407)
..|.+.|+.++|.++++.+.+. .|.....|...+
T Consensus 266 ~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 266 KIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 9999999999999999999873 454555555443
No 104
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.29 E-value=1.6e-09 Score=91.86 Aligned_cols=204 Identities=11% Similarity=0.052 Sum_probs=153.2
Q ss_pred HHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHH
Q 015416 66 AMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIE 145 (407)
Q Consensus 66 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 145 (407)
|+..|++.+..+ +++..++..++.++...|++++|++++.+.+..++.+. +...+..++.++.+.|+.+.|.+
T Consensus 85 a~~~l~~l~~~~---~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~----~lea~~l~vqi~L~~~r~d~A~k 157 (310)
T 3mv2_B 85 NIEELENLLKDK---QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEG----TTELLLLAIEVALLNNNVSTAST 157 (310)
T ss_dssp CCHHHHHTTTTS---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTT----HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcC---CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcC----cHHHHHHHHHHHHHCCCHHHHHH
Confidence 677788777654 44556667888999999999999999999987765222 67788899999999999999999
Q ss_pred HHHHHhhCCCCC-----CHHHHHHHHHHH--HHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 015416 146 VFRKMGEYRCSP-----DTLSFNNLIDQL--CKNG--MLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATY 216 (407)
Q Consensus 146 ~~~~~~~~~~~~-----~~~~~~~l~~~~--~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 216 (407)
.+++|.+. .| +..+...++.++ ...| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.
T Consensus 158 ~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~ 233 (310)
T 3mv2_B 158 IFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGI 233 (310)
T ss_dssp HHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHH
Confidence 99999875 36 245556666663 3334 899999999999764 45533444455589999999999999
Q ss_pred HHHHHHC-----CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015416 217 FRKMVDS-----GL----RPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVG 287 (407)
Q Consensus 217 ~~~~~~~-----~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 287 (407)
++.+.+. .. +.+..+...++......|+ +|.+++.++.+..|.++.+.. +.+....|+
T Consensus 234 L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d-----------~~~k~~~Fd 300 (310)
T 3mv2_B 234 VELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH-----------HQEIDAKFD 300 (310)
T ss_dssp HHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH-----------HHHHHHHHH
T ss_pred HHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH-----------HHHHHHHHH
Confidence 9976642 00 3355677677767667787 889999999997777766543 566677777
Q ss_pred HHHhcC
Q 015416 288 GILDDG 293 (407)
Q Consensus 288 ~~~~~~ 293 (407)
++..++
T Consensus 301 ~~~~ky 306 (310)
T 3mv2_B 301 ELVRKY 306 (310)
T ss_dssp HHHHTC
T ss_pred HHHHHh
Confidence 777664
No 105
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.27 E-value=2.5e-08 Score=94.84 Aligned_cols=138 Identities=12% Similarity=0.097 Sum_probs=102.8
Q ss_pred CcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCCc
Q 015416 7 VADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGM---EEEAMECYNEAVGENSSVKMS 83 (407)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~ 83 (407)
+-|..+|..++..+.+.++++.+..+|+.+... .|.+...|...+..-.+.++ ++.+..+|++++...+. +|+
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~---fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~-~~s 138 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR---FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELG-NND 138 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSC-CCC
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCC-CCC
Confidence 347888999999999999999999999999996 66688899999999999999 99999999999986521 478
Q ss_pred hhhHHHHHHHHHhcCCH--------HHHHHHHHHHHhc-CC-CCCccccccchHHHHHHHHH---------hcCCHHHHH
Q 015416 84 AVANNSVLDALCNNGKF--------DEALKLFDRMKNE-HN-PPKRLAVNLGSFNVMADGYC---------GQGRFKDAI 144 (407)
Q Consensus 84 ~~~~~~l~~~~~~~~~~--------~~A~~~~~~~~~~-~~-~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~ 144 (407)
...|...+....+.++. +...++|+.++.. |. .+. +...|...+.... ..++++.+.
T Consensus 139 v~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~----s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R 214 (679)
T 4e6h_A 139 LSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPK----SIQFWNEYLHFLEHWKPVNKFEEQQRVQYIR 214 (679)
T ss_dssp HHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSS----CHHHHHHHHHHHHTCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCccccc----chHHHHHHHHHHHhccccCcHHHHhHHHHHH
Confidence 88998888766555543 3345788776643 33 332 3346777666543 234567788
Q ss_pred HHHHHHhh
Q 015416 145 EVFRKMGE 152 (407)
Q Consensus 145 ~~~~~~~~ 152 (407)
.+|++.+.
T Consensus 215 ~iy~raL~ 222 (679)
T 4e6h_A 215 KLYKTLLC 222 (679)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 88888875
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.27 E-value=2.1e-10 Score=98.42 Aligned_cols=163 Identities=13% Similarity=0.033 Sum_probs=102.2
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 015416 83 SAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSF 162 (407)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 162 (407)
+...+..+...+...|++++|...|+++.+..+. +..++..+..++.+.|++++|...++++.... |+....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~ 187 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ------NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQ 187 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS------CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc------chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHH
Confidence 4455566666667777777777777777666544 45566667777777777777777777666543 443322
Q ss_pred HH-HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 015416 163 NN-LIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPN---LAVYNRLVGK 238 (407)
Q Consensus 163 ~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 238 (407)
.. ....+...++.+.|+..|+++.... +.+...+..+...+...|++++|...|.++++.. |+ ...+..++..
T Consensus 188 ~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--p~~~~~~a~~~l~~~ 264 (287)
T 3qou_A 188 GLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD--LTAADGQTRXTFQEI 264 (287)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTGGGGHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--cccccchHHHHHHHH
Confidence 22 2223555566666777777666542 3346666667777777777777777777776632 32 4466777777
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 015416 239 LVQVGMLDEAKSFFDIMV 256 (407)
Q Consensus 239 ~~~~g~~~~A~~~~~~~~ 256 (407)
|...|+.++|...|++..
T Consensus 265 ~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 265 LAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHCTTCHHHHHHHHHH
T ss_pred HHHcCCCCcHHHHHHHHH
Confidence 777777777776666554
No 107
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.26 E-value=1.7e-08 Score=96.07 Aligned_cols=206 Identities=14% Similarity=0.041 Sum_probs=151.1
Q ss_pred chHHHHHHHHHhcCCHHHHH-HHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---------CCCC-
Q 015416 125 GSFNVMADGYCGQGRFKDAI-EVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKG---------VNPD- 193 (407)
Q Consensus 125 ~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------~~p~- 193 (407)
..|...+..+...|+.++|. ++|++.... +|.+...|...+...-..|+++.|..+|++++... -.|+
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~ 422 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTN 422 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcc
Confidence 34555566666778888886 889888764 45666677788888888999999999999887531 0132
Q ss_pred -----------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCC
Q 015416 194 -----------EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG-MLDEAKSFFDIMVKKLKM 261 (407)
Q Consensus 194 -----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~ 261 (407)
...|...+....+.|..+.|..+|.++.+.-.......|...+....+.+ +.+.|.++|+..++..+.
T Consensus 423 ~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~ 502 (679)
T 4e6h_A 423 ESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT 502 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred hhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence 23577777777888899999999999987511223344544444444444 589999999999987777
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHH
Q 015416 262 DDASYKFMMKALSDGGKLDEILEIVGGILDDGGI-EFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAE 331 (407)
Q Consensus 262 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 331 (407)
+...+...+......|+.+.|..+|++++....- .-....|...+..-.+.|+.+.+.++.+++.+.-+.
T Consensus 503 ~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 503 DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 8888888888888889999999999999886310 013457778888788889999999999998865544
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.26 E-value=2.7e-10 Score=97.77 Aligned_cols=169 Identities=14% Similarity=0.065 Sum_probs=141.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HH
Q 015416 156 SPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVY-NR 234 (407)
Q Consensus 156 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~ 234 (407)
+.+...+..+...+...|++++|+..|+++.+.. +-+...+..+...+...|++++|...++++... .|+.... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 4566778888999999999999999999998753 335788999999999999999999999999874 4555433 33
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCc
Q 015416 235 LVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGR 314 (407)
Q Consensus 235 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 314 (407)
....+...++.+.|...+++.....|.+...+..+...+...|++++|+..|.+++....-..+...+..++.+|...|+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 34447778888999999999999888899999999999999999999999999999974222236789999999999999
Q ss_pred HHHHHHHHHHHHH
Q 015416 315 EEEVVKLMEKKER 327 (407)
Q Consensus 315 ~~~A~~~~~~~~~ 327 (407)
.++|...+++...
T Consensus 271 ~~~a~~~~r~al~ 283 (287)
T 3qou_A 271 GDALASXYRRQLY 283 (287)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9999998887643
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.26 E-value=1.6e-10 Score=100.26 Aligned_cols=236 Identities=11% Similarity=0.013 Sum_probs=118.9
Q ss_pred cCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHH
Q 015416 23 DGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDE 102 (407)
Q Consensus 23 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 102 (407)
.|++++|.+++++..+.. +... +...++++.|...|.++ +.+|...|++++
T Consensus 4 ~~~~~eA~~~~~~a~k~~---~~~~---------~~~~~~~~~A~~~~~~a-----------------~~~~~~~g~~~~ 54 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL---KTSF---------MKWKPDYDSAASEYAKA-----------------AVAFKNAKQLEQ 54 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH---CCCS---------SSCSCCHHHHHHHHHHH-----------------HHHHHHTTCHHH
T ss_pred cchHHHHHHHHHHHHHHc---cccc---------cCCCCCHHHHHHHHHHH-----------------HHHHHHcCCHHH
Confidence 456667777777766641 1110 11136666666666554 334566677777
Q ss_pred HHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 015416 103 ALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELY 182 (407)
Q Consensus 103 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 182 (407)
|...|.++.+.............+|+.+..+|...|++++|+..|++.+... ...|+...
T Consensus 55 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~---------------~~~g~~~~----- 114 (307)
T 2ifu_A 55 AKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMY---------------VENGTPDT----- 114 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH---------------HTTTCHHH-----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH---------------HHcCCHHH-----
Confidence 7777776655321110000012345555555555555555555555543310 00000000
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 183 GEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDS----GLRP-NLAVYNRLVGKLVQVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 183 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 257 (407)
...++..+..+|.. |++++|+..|++.++. +..+ ...++..++..|...|++++|+..|++...
T Consensus 115 ----------~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 115 ----------AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp ----------HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 02334444555544 5555555555554431 1000 123566677777777777777777777666
Q ss_pred c---CCC--C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcH---HHHHHHHHHHhhcCcHHHHHH
Q 015416 258 K---LKM--D-DASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSE---ELQEFVKGELSKEGREEEVVK 320 (407)
Q Consensus 258 ~---~~~--~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~ 320 (407)
. ... . ...+..++.++...|++++|+..|++.+ ...-.+.. .....++.++ ..|+.+.+..
T Consensus 184 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 184 MYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 1 111 1 2255666666777778888888777777 43111111 1233344444 5666666655
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.25 E-value=1.5e-10 Score=91.54 Aligned_cols=160 Identities=14% Similarity=0.070 Sum_probs=66.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHH
Q 015416 50 YGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNV 129 (407)
Q Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (407)
+..++..+...|++++|+..|+++++.+ |.+...+..+..++...|++++|+..|+++....+ . ...+..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~------~~~~~~ 78 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL---QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-D------NSYKSL 78 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH---HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-C------HHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-C------hHHHHH
Confidence 3444444445555555555555544433 22344444455555555555555555544443322 0 001111
Q ss_pred HHHH-HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 015416 130 MADG-YCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNP-DEYTYGLLMDACFEV 207 (407)
Q Consensus 130 l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 207 (407)
+... +...++...|+..|++..... |.+...+..+..++...|++++|...|+++++....+ +...+..++.++...
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~ 157 (176)
T 2r5s_A 79 IAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSAL 157 (176)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh
Confidence 1101 111112223344444444432 2234444445555555555555555555544432111 123444444455555
Q ss_pred CChHHHHHHHHHH
Q 015416 208 NRVDDGATYFRKM 220 (407)
Q Consensus 208 g~~~~a~~~~~~~ 220 (407)
|+.++|...|++.
T Consensus 158 g~~~~A~~~y~~a 170 (176)
T 2r5s_A 158 GQGNAIASKYRRQ 170 (176)
T ss_dssp CSSCHHHHHHHHH
T ss_pred CCCCcHHHHHHHH
Confidence 5555555444443
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.23 E-value=2.4e-10 Score=108.15 Aligned_cols=154 Identities=10% Similarity=0.029 Sum_probs=118.1
Q ss_pred cCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHH
Q 015416 23 DGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDE 102 (407)
Q Consensus 23 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 102 (407)
.|++++|+..|++..+. .+.+...|..++..+...|++++|+..|+++++.+ +.+...+..+..+|...|++++
T Consensus 2 ~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~ 75 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH---RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH---PGHPEAVARLGRVRWTQQRHAE 75 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS---TTCHHHHHHHHHHHHHTTCHHH
T ss_pred CccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHH
Confidence 47889999999998875 34467889999999999999999999999999876 4567889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc---CCHHHHH
Q 015416 103 ALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKN---GMLAEAE 179 (407)
Q Consensus 103 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~ 179 (407)
|.+.|++..+..+. +...+..+..+|.+.|++++|.+.|++..+.. +.+...+..+..++... |++++|.
T Consensus 76 A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~ 148 (568)
T 2vsy_A 76 AAVLLQQASDAAPE------HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLS 148 (568)
T ss_dssp HHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred HHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHH
Confidence 99999999987654 66788899999999999999999999998865 45677888899999999 9999999
Q ss_pred HHHHHHHhCC
Q 015416 180 ELYGEMSDKG 189 (407)
Q Consensus 180 ~~~~~~~~~~ 189 (407)
..++++.+.+
T Consensus 149 ~~~~~al~~~ 158 (568)
T 2vsy_A 149 AQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhcC
Confidence 9999998753
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.23 E-value=1.7e-10 Score=91.28 Aligned_cols=61 Identities=15% Similarity=0.091 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSD 187 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 187 (407)
.+..+...+...|++++|+..|++..+.. |.+...+..+..++...|++++|+..|+++..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 44455555666666666666666655443 33455555666666666666666666665544
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.22 E-value=1.4e-09 Score=102.86 Aligned_cols=154 Identities=13% Similarity=0.034 Sum_probs=101.1
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 015416 137 QGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATY 216 (407)
Q Consensus 137 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 216 (407)
.|++++|+..|++..+.. +.+...|..+...+...|++++|...|++..+.. +.+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 366777777777776654 3456677777777777888888888888777642 23466777777778888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcC
Q 015416 217 FRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDG---GKLDEILEIVGGILDDG 293 (407)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 293 (407)
|++..+.. +.+...+..++.+|...|++++|...|++..+..+.+...+..+..++... |++++|.+.++++++.+
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 88777643 335667777888888888888888888888776666777778888888887 88888888888877763
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.16 E-value=1.1e-09 Score=94.99 Aligned_cols=159 Identities=9% Similarity=-0.060 Sum_probs=111.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--C-CCC--HHHHHHHH
Q 015416 167 DQLCKNGMLAEAEELYGEMSDK----GVNP-DEYTYGLLMDACFEVNRVDDGATYFRKMVDSG--L-RPN--LAVYNRLV 236 (407)
Q Consensus 167 ~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~-~~~--~~~~~~l~ 236 (407)
..|...|++++|...|.++.+. +-.+ -..+|..+..+|...|++++|+..|++.++.- . .+. ..++..+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455556666666666555431 1000 13466677777777888888888887766421 0 111 34788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCc-HHHHHHHH
Q 015416 237 GKLVQVGMLDEAKSFFDIMVKKLKM------DDASYKFMMKALSDGGKLDEILEIVGGILDDG---GIEFS-EELQEFVK 306 (407)
Q Consensus 237 ~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~-~~~~~~l~ 306 (407)
..|.. |++++|+..|++.....+. ...++..+..+|...|++++|+..|++++... +..+. ...+..++
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 99988 9999999999999872221 14678899999999999999999999998742 11111 23666777
Q ss_pred HHHhhcCcHHHHHHHHHHHH
Q 015416 307 GELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~~~ 326 (407)
.++...|++++|...+++..
T Consensus 203 ~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHh
Confidence 88888999999999999976
No 115
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.16 E-value=1.2e-09 Score=91.33 Aligned_cols=196 Identities=10% Similarity=-0.053 Sum_probs=118.1
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCchhhHHHH-------HHHHHhcCCHHHHHHHHHHHHhcCCCCCccccc--------
Q 015416 59 MKGMEEEAMECYNEAVGENSSVKMSAVANNSV-------LDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN-------- 123 (407)
Q Consensus 59 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-------- 123 (407)
..+++..|.+.|.++...+ |.....|..+ ..++...++..+++..++......+..-....+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d---P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD---ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC---hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccc
Confidence 5788999999999999887 4457788777 566666666666666666655432211111111
Q ss_pred -------cchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--H
Q 015416 124 -------LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPD--E 194 (407)
Q Consensus 124 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~ 194 (407)
......+..++...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1123445666777777777777777776643 433355556666777777777777776554321 111 2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 015416 195 YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPN--LAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLK 260 (407)
Q Consensus 195 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 260 (407)
..+..+..++...|++++|+..|++.......|. .......+.++.+.|+.++|..+|+++....|
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 2455666666667777777777776664322132 23555566666666666666666666666433
No 116
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.15 E-value=3.6e-08 Score=85.26 Aligned_cols=220 Identities=12% Similarity=0.073 Sum_probs=114.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhc-C
Q 015416 61 GMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNG-KFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQ-G 138 (407)
Q Consensus 61 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g 138 (407)
+..++|++++++++..+ +-+..+|+.-..++...| .+++++..++.++...++ +..+|+.-..++.+. +
T Consensus 68 e~se~AL~lt~~~L~~n---P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK------ny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN---PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK------SYQVWHHRLLLLDRISP 138 (349)
T ss_dssp CCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC------CHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHhC---chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhcC
Confidence 34455666666666655 334555555555555555 366666666666655444 444555555555554 4
Q ss_pred -CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 015416 139 -RFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLA--------EAEELYGEMSDKGVNPDEYTYGLLMDACFEVNR 209 (407)
Q Consensus 139 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 209 (407)
++++++++++++++.. +.+..+|+...-++.+.|.++ ++++.++++++.. .-+...|+.....+.+.+.
T Consensus 139 ~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp SCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTT
T ss_pred CChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccc
Confidence 5566666666666544 345555555444444444444 5566666665543 2245555555555555444
Q ss_pred -------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhcC---
Q 015416 210 -------VDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGML--------------------DEAKSFFDIMVKKL--- 259 (407)
Q Consensus 210 -------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~--- 259 (407)
++++++.+.+++... +-|...|+.+-..+.+.|+. .........+....
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPE 295 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCS
T ss_pred cccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccc
Confidence 455666666655532 33455555555555554442 11111111111111
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 260 ---KMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 260 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
.+++..+..++..|...|+.++|.++++.+.+.
T Consensus 296 ~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 296 DTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp SCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 345566666666666667777777777766544
No 117
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.12 E-value=9.5e-10 Score=81.47 Aligned_cols=96 Identities=20% Similarity=0.167 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHH
Q 015416 49 VYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFN 128 (407)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (407)
.+...+..|.+.|++++|+..|+++++.+ |.+..+|..+..+|.+.|++++|+..|+++++..+. +..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~a~~ 85 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD---PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK------FIKGYI 85 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh------hhHHHH
Confidence 34444444444555555555555444443 223444444444444445555555554444444322 333444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhC
Q 015416 129 VMADGYCGQGRFKDAIEVFRKMGEY 153 (407)
Q Consensus 129 ~l~~~~~~~g~~~~A~~~~~~~~~~ 153 (407)
.++.+|...|++++|++.|++.++.
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4444444444444444444444443
No 118
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.12 E-value=4.7e-09 Score=77.70 Aligned_cols=110 Identities=13% Similarity=0.026 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 015416 195 YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALS 274 (407)
Q Consensus 195 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 274 (407)
..+...+..|.+.|++++|++.|++.++.. +.+..+|..++.+|...|++++|+..|++.++..|.+...|..++.+|.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 345556666666666666666666666542 3345566666666666666666666666666655556666666666666
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Q 015416 275 DGGKLDEILEIVGGILDDGGIEFSEELQEFVKG 307 (407)
Q Consensus 275 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 307 (407)
..|++++|++.|+++++.+ |-+...+..+..
T Consensus 93 ~~~~~~~A~~~~~~al~l~--P~~~~a~~~l~~ 123 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVD--PSNEEAREGVRN 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC--cCCHHHHHHHHH
Confidence 6666666666666666653 344444444443
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.09 E-value=1.1e-07 Score=81.65 Aligned_cols=169 Identities=16% Similarity=0.070 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--H
Q 015416 160 LSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPD-----EYTYGLLMDACFEVNRVDDGATYFRKMVDSGL---RPN--L 229 (407)
Q Consensus 160 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~ 229 (407)
..+...+..+...|++++|...+.+..+...... ...+..+...+...|++++|...+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455567778889999999999988876432211 12344466667788899999999998875321 122 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---C-CCCc
Q 015416 230 AVYNRLVGKLVQVGMLDEAKSFFDIMVK---KLKMD----DASYKFMMKALSDGGKLDEILEIVGGILDDG---G-IEFS 298 (407)
Q Consensus 230 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~ 298 (407)
.+++.++..|...|++++|...|+++.. ..+.+ ..++..++.+|...|++++|+..+++++... + ....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4888899999999999999999999884 33332 2588889999999999999999999887641 1 1112
Q ss_pred HHHHHHHHHHHhhcCcHHHH-HHHHHHHHHh
Q 015416 299 EELQEFVKGELSKEGREEEV-VKLMEKKERE 328 (407)
Q Consensus 299 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 328 (407)
...+..++.+|.+.|++++| ...+++....
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 56788889999999999999 7777776543
No 120
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.08 E-value=8.1e-09 Score=80.28 Aligned_cols=129 Identities=10% Similarity=0.032 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 015416 195 YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALS 274 (407)
Q Consensus 195 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 274 (407)
..+..+...+...|++++|...|++..+.. +.+..++..++.++...|++++|...+++.....+.+..++..++.++.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345666777777778888888887777643 3456777788888888888888888888888766777788888888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcHHHHHHH--HHHHhhcCcHHHHHHHHHHHH
Q 015416 275 DGGKLDEILEIVGGILDDGGIEFSEELQEFV--KGELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 275 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~ 326 (407)
..|++++|+..|+++.... +.+...+..+ +..+.+.|++++|...+++..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8888888888888888763 3344444333 333667788888887777654
No 121
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.08 E-value=8.3e-09 Score=78.79 Aligned_cols=98 Identities=7% Similarity=-0.059 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 015416 230 AVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGEL 309 (407)
Q Consensus 230 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (407)
..+..++..+.+.|++++|...|+++....|.++..|..++.+|...|++++|+..|++++... |.++..+..++.+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHH
Confidence 3566666666666677777777766666666666666666666666677777777776666653 44455666666666
Q ss_pred hhcCcHHHHHHHHHHHHHhh
Q 015416 310 SKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 310 ~~~g~~~~A~~~~~~~~~~~ 329 (407)
.+.|++++|...|++..+..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 66777777776666666543
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.08 E-value=2.3e-08 Score=81.38 Aligned_cols=91 Identities=11% Similarity=0.054 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015416 127 FNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFE 206 (407)
Q Consensus 127 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 206 (407)
+..+...+...|++++|+..|++.. .|+...|..++.+|...|++++|+..|++..+.. +.+...+..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3444555555555555555555542 2445555555555555555555555555555432 2234445555555555
Q ss_pred cCChHHHHHHHHHHHH
Q 015416 207 VNRVDDGATYFRKMVD 222 (407)
Q Consensus 207 ~g~~~~a~~~~~~~~~ 222 (407)
.|++++|...|+++.+
T Consensus 84 ~~~~~~A~~~~~~al~ 99 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALI 99 (213)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 5555555555555554
No 123
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.08 E-value=1.2e-07 Score=82.09 Aligned_cols=227 Identities=9% Similarity=0.030 Sum_probs=176.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 015416 93 ALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQG-RFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCK 171 (407)
Q Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 171 (407)
...+.+..++|++++++++...+. +..+|+.-..++...| .+++++.+++.++... +-+..+|+.-..++..
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~------~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPA------HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHhCch------hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 334455567899999999998766 6678888888888888 5999999999999876 5677889888888877
Q ss_pred c-C-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 015416 172 N-G-MLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVD--------DGATYFRKMVDSGLRPNLAVYNRLVGKLVQ 241 (407)
Q Consensus 172 ~-g-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 241 (407)
. + ++++++.+++++++.. +-+..+|+.-.-++.+.|.++ ++++.++++++.. +-|..+|+.....+.+
T Consensus 136 l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVS 213 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTT
T ss_pred hcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 7 7 8999999999999864 336777777666666666666 8999999999865 4588899999888888
Q ss_pred cCC-------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhcC-
Q 015416 242 VGM-------LDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKL--------------------DEILEIVGGILDDG- 293 (407)
Q Consensus 242 ~g~-------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~- 293 (407)
.++ ++++++.+.+++...|.|...|+.+-..+.+.|+. .........+....
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPL 293 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CC
T ss_pred ccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccc
Confidence 876 78999999999998888999999888888777654 23333333333321
Q ss_pred ---CCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh
Q 015416 294 ---GIEFSEELQEFVKGELSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 294 ---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 328 (407)
.-.+++.....+++.|...|+.++|.++++.+..+
T Consensus 294 ~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 294 PEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 11467778899999999999999999999998643
No 124
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.07 E-value=9.1e-09 Score=83.82 Aligned_cols=125 Identities=8% Similarity=-0.035 Sum_probs=65.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 015416 162 FNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQ 241 (407)
Q Consensus 162 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 241 (407)
+..++..+...|++++|+..|+++. .|+...+..+..+|...|++++|...|++..+.. +.+...+..++.+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3444555555555555555555442 3345555555555555555555555555555432 2344455555555555
Q ss_pred cCCHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 242 VGMLDEAKSFFDIMVKKLKMDD----------------ASYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 242 ~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
.|++++|...|+++....+.+. .++..++.+|...|++++|+..|+++..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555555555555555333333 4455555555555555555555555544
No 125
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.06 E-value=3.5e-09 Score=80.85 Aligned_cols=103 Identities=13% Similarity=-0.059 Sum_probs=75.5
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccc
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLG 125 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (407)
+...+..++..+.+.|++++|+..|++++..+ |.+...|..+..+|...|++++|+..|+++.+..|. ++.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~---P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~------~~~ 105 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD---FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN------DYT 105 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS------CCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC------CcH
Confidence 44567777777777788888888887777766 446677777777777778888888888777776654 556
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDT 159 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 159 (407)
.|..+..+|...|++++|+..|++.++.. |+.
T Consensus 106 ~~~~lg~~~~~lg~~~eA~~~~~~al~l~--~~~ 137 (151)
T 3gyz_A 106 PVFHTGQCQLRLKAPLKAKECFELVIQHS--NDE 137 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCH
Confidence 77777777777777777777777777653 444
No 126
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.05 E-value=7.9e-10 Score=94.45 Aligned_cols=193 Identities=9% Similarity=-0.007 Sum_probs=89.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 015416 84 AVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFN 163 (407)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 163 (407)
...+..++..+...|++++|+..|+++++..+. +...+..+..+|.+.|++++|+..+++.++.. +.+...+.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 76 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHF 76 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 344445555555555555555555555554332 34455555555555555555555555555543 33445555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 015416 164 NLIDQLCKNGMLAEAEELYGEMSDKGVNPDE-YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQV 242 (407)
Q Consensus 164 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 242 (407)
.++.+|...|++++|+..|+++.+.. |+. ..+...+....+ ..+... +........+.+......+... ..
T Consensus 77 ~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~ 148 (281)
T 2c2l_A 77 FLGQCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRL--IA 148 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHH--HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHH--HH
Confidence 55555666666666666555554321 110 000001111110 001111 1112222223333333333222 24
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh
Q 015416 243 GMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDG-GKLDEILEIVGGILD 291 (407)
Q Consensus 243 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 291 (407)
|++++|.+.++...+..+.+......+...+.+. +.+++|.++|.++.+
T Consensus 149 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 149 AERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 6666666666666654444444444444444443 556677777766654
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.05 E-value=6.9e-09 Score=80.68 Aligned_cols=128 Identities=15% Similarity=0.123 Sum_probs=72.6
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchH
Q 015416 48 VVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSF 127 (407)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 127 (407)
..|..++..+...|++++|+..|++++... +.+..++..++.++...|++++|...|++..+..+. +..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~ 84 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK------YIKGY 84 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------cHHHH
Confidence 345556666666666666666666666554 334555666666666666666666666666655432 34455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHH
Q 015416 128 NVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNL--IDQLCKNGMLAEAEELYGEM 185 (407)
Q Consensus 128 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~a~~~~~~~ 185 (407)
..++.++...|++++|...|++..... +.+...+..+ +..+...|++++|+..+...
T Consensus 85 ~~~a~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 85 YRRAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 666666666666666666666665543 2333333222 22245556666666665544
No 128
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.04 E-value=2.1e-09 Score=91.86 Aligned_cols=194 Identities=10% Similarity=-0.031 Sum_probs=114.3
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHH
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANN 88 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
+...+..+...+.+.|++++|+..|+..... .+.+...|..++.+|...|++++|+..|+++++.+ +.+...+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~ 76 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVKAHF 76 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC---TTCHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCCHHHHH
Confidence 4566777777888888888888888888775 33467777888888888888888888888888765 44667777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 015416 89 SVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQ 168 (407)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 168 (407)
.++.+|...|++++|...|+++.+..+.. ...+...+....+. .++... ........+.+......+...
T Consensus 77 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~i~~~l~~l 146 (281)
T 2c2l_A 77 FLGQCQLEMESYDEAIANLQRAYSLAKEQ------RLNFGDDIPSALRI---AKKKRW-NSIEERRIHQESELHSYLTRL 146 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHT------TCCCCSHHHHHHHH---HHHHHH-HHHHHTCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCccc------hhhHHHHHHHHHHH---HHHHHH-HHHHHHHHhhhHHHHHHHHHH
Confidence 78888888888888888888777654321 11111111111111 111111 112222233444444333332
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhc-CChHHHHHHHHHHHH
Q 015416 169 LCKNGMLAEAEELYGEMSDKGVNPDE-YTYGLLMDACFEV-NRVDDGATYFRKMVD 222 (407)
Q Consensus 169 ~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~-g~~~~a~~~~~~~~~ 222 (407)
..|++++|++.++.+.+. .|+. .....+...+... +.++++.++|..+.+
T Consensus 147 --~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 147 --IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp --HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred --HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 256777777777766653 3443 2223333333333 456667777766654
No 129
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.04 E-value=3.1e-08 Score=85.14 Aligned_cols=162 Identities=11% Similarity=-0.008 Sum_probs=90.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCC-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHH
Q 015416 130 MADGYCGQGRFKDAIEVFRKMGEYRC-SPDT----LSFNNLIDQLCKNGMLAEAEELYGEMSDKGVN-PD----EYTYGL 199 (407)
Q Consensus 130 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~ 199 (407)
.+..+...|++++|..++++...... .|+. ..+..++..+...|++++|+..|+++.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35566667777777777777665321 1111 12233555555666777777777777653211 12 224666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCC-CHHHHH
Q 015416 200 LMDACFEVNRVDDGATYFRKMVD----S-GLRPN-LAVYNRLVGKLVQVGMLDEAKSFFDIMVK-----KLKM-DDASYK 267 (407)
Q Consensus 200 l~~~~~~~g~~~~a~~~~~~~~~----~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~~~~~~ 267 (407)
++.+|...|++++|..+|+++++ . +..+. ..++..++..|...|++++|..++++... +..+ -..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 66667777777777777666652 1 11111 12556666666666666666666666655 1111 145566
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHh
Q 015416 268 FMMKALSDGGK-LDEILEIVGGILD 291 (407)
Q Consensus 268 ~l~~~~~~~g~-~~~A~~~~~~~~~ 291 (407)
.++.+|...|+ +++|+..|++++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 66666666663 4666666665554
No 130
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.04 E-value=2.3e-08 Score=86.00 Aligned_cols=168 Identities=10% Similarity=-0.002 Sum_probs=91.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCch----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHH
Q 015416 53 LMKGYFMKGMEEEAMECYNEAVGENSSVKMSA----VANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFN 128 (407)
Q Consensus 53 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (407)
.+..+...|++++|..++++.....+. .|+. ..+..++..+...+++++|+..|+++...............+++
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccC-ChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 355666777777777777777764321 2221 12233555566666777777777777764332211100122566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhh----C-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC-HHHH
Q 015416 129 VMADGYCGQGRFKDAIEVFRKMGE----Y-RCSPD-TLSFNNLIDQLCKNGMLAEAEELYGEMSDK----GVNPD-EYTY 197 (407)
Q Consensus 129 ~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~ 197 (407)
.++.+|...|++++|+..|+++++ . +..+. ..++..++.+|...|++++|+..+++.++. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 677777777777777777766652 1 11111 125566666666666666666666665431 11111 3455
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHH
Q 015416 198 GLLMDACFEVNR-VDDGATYFRKMV 221 (407)
Q Consensus 198 ~~l~~~~~~~g~-~~~a~~~~~~~~ 221 (407)
..+..+|...|+ +++|...|+++.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 555555655553 355655555554
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.04 E-value=1.5e-08 Score=87.21 Aligned_cols=170 Identities=11% Similarity=0.046 Sum_probs=77.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---CCC--HH
Q 015416 86 ANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRC---SPD--TL 160 (407)
Q Consensus 86 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~ 160 (407)
.+...+..+...|++++|.+.+.+..+..............+..+...+...|++++|+..|++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444555666667777777776666654322110000111233344455555666666666655543211 011 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-H
Q 015416 161 SFNNLIDQLCKNGMLAEAEELYGEMSDK-GVNPD-----EYTYGLLMDACFEVNRVDDGATYFRKMVDS----GLRPN-L 229 (407)
Q Consensus 161 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~ 229 (407)
+|+.++..|...|++++|+.+|+++.+. ...|+ ..++..++.+|...|++++|..++++.++. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 4555555555566666666555555421 00111 134444555555555555555555544421 00000 2
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHH
Q 015416 230 AVYNRLVGKLVQVGMLDEA-KSFFDIM 255 (407)
Q Consensus 230 ~~~~~l~~~~~~~g~~~~A-~~~~~~~ 255 (407)
.+|..++.+|...|++++| ...+++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3444444444444554444 3434443
No 132
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.03 E-value=2.6e-08 Score=83.36 Aligned_cols=197 Identities=9% Similarity=-0.063 Sum_probs=141.2
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCccccccchHHHH-------HHHHHhcCCHHHHHHHHHHHhhCCCCCC----------
Q 015416 96 NNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVM-------ADGYCGQGRFKDAIEVFRKMGEYRCSPD---------- 158 (407)
Q Consensus 96 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------- 158 (407)
..++...|.+.|.++....+. ....|..+ ...+.+.++..+++..+..-... .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~------~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g 89 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES------ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGG 89 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCT
T ss_pred cCCCHHHHHHHHHHHHHhChh------hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCC
Confidence 579999999999999998765 56677777 56666666666666666655442 121
Q ss_pred ------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 015416 159 ------------TLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLR 226 (407)
Q Consensus 159 ------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 226 (407)
...+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...... .
T Consensus 90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d 166 (282)
T 4f3v_A 90 LYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-D 166 (282)
T ss_dssp TTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-C
T ss_pred cccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-C
Confidence 123445667788889999999999888764 3544366667778888899999999998665521 1
Q ss_pred CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHH
Q 015416 227 PN--LAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLK-M--DDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEEL 301 (407)
Q Consensus 227 ~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 301 (407)
|. ..++..++.++...|++++|+..|++...+.. | ..........++.+.|+.++|..+|+++... .|+...
T Consensus 167 ~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~---~P~~~~ 243 (282)
T 4f3v_A 167 KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT---HPEPKV 243 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---SCCHHH
T ss_pred cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcHHH
Confidence 11 23677888888889999999999988876432 3 3457778888888889999999999888886 344445
Q ss_pred HHHHH
Q 015416 302 QEFVK 306 (407)
Q Consensus 302 ~~~l~ 306 (407)
...|.
T Consensus 244 ~~aL~ 248 (282)
T 4f3v_A 244 AAALK 248 (282)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55443
No 133
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.01 E-value=9.8e-07 Score=81.35 Aligned_cols=298 Identities=9% Similarity=-0.058 Sum_probs=138.6
Q ss_pred cCHHHHHHHHHHHHhcCC-hhhHHHHHHHHHHhhCCccCCcchHHHHHHHHH----HcCCHHHHHHHHHHHHhCCCCCCC
Q 015416 8 ADPVVYSYLMLGFVRDGD-SDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYF----MKGMEEEAMECYNEAVGENSSVKM 82 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~ 82 (407)
|+...|...+....+.++ .+....+|+......+..+++...|...+..+. ..++.+.+..+|++++... ...
T Consensus 45 ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P--~~~ 122 (493)
T 2uy1_A 45 YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTP--MGS 122 (493)
T ss_dssp CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSC--CTT
T ss_pred CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhCh--hhh
Confidence 566666666666655553 345566666666542222334455555555433 2345666667777766521 111
Q ss_pred chhhHHHHHHHHH-------------hcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcC--C-----HHH
Q 015416 83 SAVANNSVLDALC-------------NNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQG--R-----FKD 142 (407)
Q Consensus 83 ~~~~~~~l~~~~~-------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~-----~~~ 142 (407)
-...|......-. ..+.+..|..+++.+...-... +...|...+..-...+ - .+.
T Consensus 123 ~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~-----s~~~W~~y~~~E~~~~~~~~~~~~~~R 197 (493)
T 2uy1_A 123 LSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW-----SVKNAARLIDLEMENGMKLGGRPHESR 197 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----SHHHHHHHHHHHHTCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc-----cHHHHHHHHHHHhcCCccCcchhhHHH
Confidence 1112221111100 0011222233333222110000 1123333333322111 0 234
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015416 143 AIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVD 222 (407)
Q Consensus 143 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 222 (407)
+..+|++++... +.+...|...+..+.+.|+.+.|..+|+++... |....... .|....+.++. ++.+.+
T Consensus 198 v~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~ 267 (493)
T 2uy1_A 198 MHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHH
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHH
Confidence 566777777643 556677777777777888888888888888765 33222111 12221111111 222211
Q ss_pred CC---------CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 015416 223 SG---------LRP---NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGG-KLDEILEIVGGI 289 (407)
Q Consensus 223 ~~---------~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~ 289 (407)
.- ..+ ...+|...+..+.+.+..+.|..+|+++ ...+.+...|...+..-...+ +.+.|..+|+..
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 00 000 1134555555555566677777777766 311123334433332222222 467777777776
Q ss_pred HhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 015416 290 LDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKK 325 (407)
Q Consensus 290 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 325 (407)
++.. +-++..+...++...+.|+.+.|..+++++
T Consensus 347 l~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 347 LLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6653 223344444555556666666666666654
No 134
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.01 E-value=8.5e-10 Score=96.83 Aligned_cols=152 Identities=13% Similarity=0.073 Sum_probs=95.7
Q ss_pred CChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC------------chhhHHHHH
Q 015416 24 GDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKM------------SAVANNSVL 91 (407)
Q Consensus 24 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~l~ 91 (407)
+++++|+..|+..... .+.+...|..++..+.+.|++++|+..|++++...|.... ...+|..+.
T Consensus 127 ~~~~~A~~~~~~a~~~---~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEE---KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEECCCCGGGCCHHH---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHH---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH
Confidence 4555666666554442 1225667888888888888899998888888876632100 035666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 015416 92 DALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCK 171 (407)
Q Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 171 (407)
.+|.+.|++++|+..|+++++..+. +..++..+..+|...|++++|+..|++.++.. +.+...+..+..++..
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSN------NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
Confidence 6666667777777777666665433 45566666666666666666666666666653 3445566666666666
Q ss_pred cCCHHHH-HHHHHHH
Q 015416 172 NGMLAEA-EELYGEM 185 (407)
Q Consensus 172 ~g~~~~a-~~~~~~~ 185 (407)
.|+++++ ..+|+.|
T Consensus 277 ~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 277 IRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 6666665 2344444
No 135
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.00 E-value=7.4e-09 Score=76.74 Aligned_cols=121 Identities=12% Similarity=-0.006 Sum_probs=91.6
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhH
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVAN 87 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (407)
.+...+..+...+...|++++|...|++.... .+.+...+..++.++...|++++|+..++++.... +.+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~ 83 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID---PAYSKAY 83 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC---ccCHHHH
Confidence 34566777788888888888888888888875 34467778888888888888888888888888765 4456777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCH
Q 015416 88 NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRF 140 (407)
Q Consensus 88 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 140 (407)
..++.++...|++++|...|+++.+..+. +...+..+..++...|++
T Consensus 84 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVAYYKKALELDPD------NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCcc------chHHHHHHHHHHHHHhcC
Confidence 78888888888888888888888776543 445667777777766654
No 136
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.00 E-value=3.5e-08 Score=72.33 Aligned_cols=113 Identities=16% Similarity=0.203 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 015416 195 YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALS 274 (407)
Q Consensus 195 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 274 (407)
..+..+...+...|++++|..+++++.+.. +.+..++..++..+...|++++|..+++++....+.+..++..++.++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 344555555555555555555555555432 2344555556666666666666666666665544555556666666666
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHh
Q 015416 275 DGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELS 310 (407)
Q Consensus 275 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 310 (407)
..|++++|...|+++.... +.+...+..+..++.
T Consensus 89 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD--PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHH
Confidence 6666666666666665542 333444444444443
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.99 E-value=1e-08 Score=76.37 Aligned_cols=120 Identities=10% Similarity=0.029 Sum_probs=89.2
Q ss_pred CcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhh
Q 015416 7 VADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVA 86 (407)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 86 (407)
+.+...|..+...+.+.|++++|+..|++..+. .+.+..++..++.++...|++++|+..|++++... +.+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~ 86 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR---NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE---PTFIKG 86 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT---CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC---TTCHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCchHH
Confidence 445666777888888888888888888888774 34467778888888888888888888888888765 446677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcC
Q 015416 87 NNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQG 138 (407)
Q Consensus 87 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 138 (407)
+..+..++...|++++|...|++..+..+. +...+..+..++...|
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKALDLDSS------CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCGG------GTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHhc
Confidence 778888888888888888888888776533 4456666666666554
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.99 E-value=7.3e-09 Score=76.77 Aligned_cols=119 Identities=15% Similarity=0.065 Sum_probs=74.1
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccc
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLG 125 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (407)
+...+..++..+...|++++|+..|+++.... +.+...+..++.++...|++++|...+.+..+..+. +..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~ 81 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN---PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA------YSK 81 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc------CHH
Confidence 44556666666777777777777777766654 334556666666666777777777777766665432 344
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGM 174 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 174 (407)
.+..++.+|...|++++|...|++..... +.+...+..+..++...|+
T Consensus 82 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 82 AYGRMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 56666666666666666666666666543 3345555555555555554
No 139
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.99 E-value=1.8e-08 Score=74.99 Aligned_cols=117 Identities=9% Similarity=0.031 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 015416 194 EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKAL 273 (407)
Q Consensus 194 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 273 (407)
...+..+...+...|++++|...|+++.+.. +.+..++..++..|...|++++|...++++....+.+...+..++.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4455555556666666666666666655432 224555666666666666666666666666665555566666666666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcC
Q 015416 274 SDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEG 313 (407)
Q Consensus 274 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 313 (407)
...|++++|+..|+++.... +.+...+..+..++.+.|
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLD--SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--GGGTHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhc
Confidence 66666666666666666542 333444555555554443
No 140
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.99 E-value=1.6e-08 Score=74.20 Aligned_cols=115 Identities=18% Similarity=0.275 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHH
Q 015416 10 PVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNS 89 (407)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (407)
...|..+...+...|++++|.++|+++.+. .+.+..++..++.++...|++++|+.+|+++.... +.+..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~ 82 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYN 82 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CccHHHHHH
Confidence 466777888888888888888888888875 34466778888888888888888888888888765 446677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHh
Q 015416 90 VLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCG 136 (407)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 136 (407)
+..++...|++++|...|+++.+..+. +...+..+..++..
T Consensus 83 la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALELDPN------NAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHh
Confidence 888888888888888888888876543 44455555555544
No 141
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.99 E-value=8.9e-07 Score=76.23 Aligned_cols=165 Identities=8% Similarity=0.021 Sum_probs=99.1
Q ss_pred HcCCHH-HHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCCccccccchH
Q 015416 59 MKGMEE-EAMECYNEAVGENSSVKMSAVANNSVLDALCNNGK----------FDEALKLFDRMKNEHNPPKRLAVNLGSF 127 (407)
Q Consensus 59 ~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 127 (407)
+.|.++ +|+.+++.++..+ |.+..+|+.-..++...+. +++++.+++.+....+. +..+|
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n---P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK------ny~aW 111 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN---PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK------SYGTW 111 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT------CHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC------CHHHH
Confidence 445554 6788888888776 3345556554444433332 56777777777776554 56677
Q ss_pred HHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015416 128 NVMADGYCGQG--RFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGM-LAEAEELYGEMSDKGVNPDEYTYGLLMDAC 204 (407)
Q Consensus 128 ~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 204 (407)
+.-..++.+.| .+++++.+++.+.+.. +.|..+|+.-.-++...|. ++++++.+.++++.. +-+...|+.....+
T Consensus 112 ~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll 189 (331)
T 3dss_A 112 HHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLL 189 (331)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 77666666666 3677777777777765 4566777776666666676 467777777777653 23555666555554
Q ss_pred Hhc--------------CChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 015416 205 FEV--------------NRVDDGATYFRKMVDSGLRPNLAVYNRL 235 (407)
Q Consensus 205 ~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l 235 (407)
... +.++++++.+...+... +-|..+|+-+
T Consensus 190 ~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~ 233 (331)
T 3dss_A 190 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYH 233 (331)
T ss_dssp HHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 443 23445555555555432 2244444433
No 142
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.99 E-value=6.2e-09 Score=79.46 Aligned_cols=98 Identities=11% Similarity=-0.076 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 015416 194 EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKAL 273 (407)
Q Consensus 194 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 273 (407)
...+..+...+...|++++|...|+++.... +.+...|..++.+|...|++++|...|+++....|.++..+..++.+|
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4456666777777777777777777777643 345667777777777777777777777777776666777777777777
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 015416 274 SDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 274 ~~~g~~~~A~~~~~~~~~~ 292 (407)
...|++++|+..|+++++.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777765
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.97 E-value=5.4e-09 Score=82.51 Aligned_cols=122 Identities=10% Similarity=0.169 Sum_probs=83.0
Q ss_pred HhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHH-HHhcCC
Q 015416 21 VRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDA-LCNNGK 99 (407)
Q Consensus 21 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~ 99 (407)
...|++++|+..++..... .+.+...|..++.+|...|++++|+..|++++..+ +.+...+..+..+ +...|+
T Consensus 21 ~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~la~~l~~~~~~ 94 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR---GENAELYAALATVLYYQASQ 94 (177)
T ss_dssp C-----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHTTT
T ss_pred hhccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhcCC
Confidence 3456777777777777775 34466777777777777788888888887777765 3356666677776 667777
Q ss_pred H--HHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 015416 100 F--DEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYR 154 (407)
Q Consensus 100 ~--~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 154 (407)
+ ++|...|+++.+..+. +..++..+..+|...|++++|...|+++....
T Consensus 95 ~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 95 HMTAQTRAMIDKALALDSN------EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred cchHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 7 7777777777776543 45566777777777777777777777777654
No 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.97 E-value=4.8e-08 Score=85.65 Aligned_cols=131 Identities=9% Similarity=-0.076 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 015416 195 YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRP--------------NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLK 260 (407)
Q Consensus 195 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 260 (407)
..+..+...|...|++++|...|+++++..... ...+|..++.+|...|++++|+..|++++...|
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 344445555555555555555555555422111 146888899999999999999999999999778
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHH-HHHHHHHHH
Q 015416 261 MDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEV-VKLMEKKER 327 (407)
Q Consensus 261 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 327 (407)
.+..++..++.+|...|++++|+..|+++++.. +.+...+..+..++.+.|+.++| ...+++|..
T Consensus 228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999874 56677888899999999999988 456666654
No 145
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.97 E-value=5.7e-09 Score=84.22 Aligned_cols=163 Identities=15% Similarity=0.016 Sum_probs=97.7
Q ss_pred HhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CCCCchhhHHHHHHHHHhc
Q 015416 21 VRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENS---SVKMSAVANNSVLDALCNN 97 (407)
Q Consensus 21 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~ 97 (407)
...|++++|.++++.+.. .......++..+...+...|++++|+..|++++.... ..+....++..+..++...
T Consensus 3 ~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA---HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA 79 (203)
T ss_dssp ----CHHHHHHHHHHHHT---STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Confidence 456888888885555533 1223566778888888888888888888888775210 0133455677777788888
Q ss_pred CCHHHHHHHHHHHHhcCCCCC-ccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHH
Q 015416 98 GKFDEALKLFDRMKNEHNPPK-RLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRC-SPD----TLSFNNLIDQLCK 171 (407)
Q Consensus 98 ~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~ 171 (407)
|++++|...+++..+...... .......++..+..++...|++++|...+++...... ..+ ..++..+..++..
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 159 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ 159 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 888888888877665411000 0000234566677777777777777777766643210 011 1234556666666
Q ss_pred cCCHHHHHHHHHHHH
Q 015416 172 NGMLAEAEELYGEMS 186 (407)
Q Consensus 172 ~g~~~~a~~~~~~~~ 186 (407)
.|++++|...+++..
T Consensus 160 ~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 160 EKNLLEAQQHWLRAR 174 (203)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 677777766666654
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.97 E-value=3.9e-09 Score=80.60 Aligned_cols=95 Identities=16% Similarity=0.063 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 015416 85 VANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNN 164 (407)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 164 (407)
..+..+...+...|++++|+..|+++....+. +...|..+..+|...|++++|+..|++.+... |.+...+..
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~ 94 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY------DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFH 94 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHH
Confidence 33444444444444444444444444443322 33344444444444444444444444444432 223344444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 015416 165 LIDQLCKNGMLAEAEELYGEMS 186 (407)
Q Consensus 165 l~~~~~~~g~~~~a~~~~~~~~ 186 (407)
++.+|...|++++|...|++.+
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444444444444444
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.96 E-value=5.8e-09 Score=82.34 Aligned_cols=121 Identities=12% Similarity=0.113 Sum_probs=95.0
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHH-HHh
Q 015416 58 FMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADG-YCG 136 (407)
Q Consensus 58 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 136 (407)
...|++++|+..|++++... +.+...|..++.+|...|++++|...|+++.+..+. +...+..+..+ |..
T Consensus 21 ~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~l~~~ 91 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN---PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE------NAELYAALATVLYYQ 91 (177)
T ss_dssp C-----CCCCHHHHHHHHHC---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS------CHHHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHh
Confidence 45688888999998888876 456788888888999999999999999988877544 55577778888 778
Q ss_pred cCCH--HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 015416 137 QGRF--KDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDK 188 (407)
Q Consensus 137 ~g~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 188 (407)
.|++ ++|...|++..... +.+...+..++.+|...|++++|...|+++.+.
T Consensus 92 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 92 ASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp TTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 8888 99999998888765 456778888888888999999999999988874
No 148
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.96 E-value=9.1e-09 Score=83.01 Aligned_cols=161 Identities=13% Similarity=0.048 Sum_probs=81.2
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhc
Q 015416 58 FMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQ 137 (407)
Q Consensus 58 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 137 (407)
...|++++|.++++.+.. + ......++..+..++...|++++|...+++..+.............++..+...|...
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-H--PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA 79 (203)
T ss_dssp ----CHHHHHHHHHHHHT-S--TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHhcC-C--hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Confidence 356777777775544433 2 1234566677777777777777777777776652111110111334556666666666
Q ss_pred CCHHHHHHHHHHHhhC--CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHh
Q 015416 138 GRFKDAIEVFRKMGEY--RCSPD----TLSFNNLIDQLCKNGMLAEAEELYGEMSDKGV-NPD----EYTYGLLMDACFE 206 (407)
Q Consensus 138 g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~ 206 (407)
|++++|...+++.... ..+.+ ...+..+...+...|++++|...+++...... ..+ ..++..+..++..
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 159 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ 159 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 6666666666655432 00111 22355555566666666666666655542100 001 1223444445555
Q ss_pred cCChHHHHHHHHHHH
Q 015416 207 VNRVDDGATYFRKMV 221 (407)
Q Consensus 207 ~g~~~~a~~~~~~~~ 221 (407)
.|++++|...+++..
T Consensus 160 ~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 160 EKNLLEAQQHWLRAR 174 (203)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 555555555554443
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.92 E-value=1.9e-09 Score=86.95 Aligned_cols=153 Identities=13% Similarity=0.037 Sum_probs=78.5
Q ss_pred HHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC--c-----------
Q 015416 17 MLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKM--S----------- 83 (407)
Q Consensus 17 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~----------- 83 (407)
+......|+++++.+.++.-... .......+..++..+...|++++|+..|++++...+..+. .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEE---KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp -----------CCCSGGGCCHHH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHH---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence 33444556666666666543332 2224556777888888888888888888888876532110 0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 015416 84 AVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFN 163 (407)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 163 (407)
..++..+..+|...|++++|+..++++++..+. +..++..+..+|...|++++|+..|++..... +.+...+.
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 160 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN------NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRN 160 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHH
Confidence 144555555555666666666666655554332 34455555555555556666655555555443 23444455
Q ss_pred HHHHHHHHcCCHHHHH
Q 015416 164 NLIDQLCKNGMLAEAE 179 (407)
Q Consensus 164 ~l~~~~~~~g~~~~a~ 179 (407)
.+..++...++..++.
T Consensus 161 ~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 161 SYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555544444444433
No 150
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.92 E-value=1e-06 Score=75.86 Aligned_cols=182 Identities=10% Similarity=-0.032 Sum_probs=137.2
Q ss_pred HHHHHHHHH---HHhcCChh-hHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCC----------HHHHHHHHHHHHhC
Q 015416 11 VVYSYLMLG---FVRDGDSD-GVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGM----------EEEAMECYNEAVGE 76 (407)
Q Consensus 11 ~~~~~li~~---~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~ 76 (407)
..|..+... ..+.|.+. +|+.+++.+... .|-+..+|+.-..++...+. +++++.+++.++..
T Consensus 27 ~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~---nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~ 103 (331)
T 3dss_A 27 KLYQSATQAVFQKRQAGELDESVLELTSQILGA---NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV 103 (331)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh
Confidence 344444443 34567765 799999999985 34466778776666555444 68999999999988
Q ss_pred CCCCCCchhhHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCC-HHHHHHHHHHHhhC
Q 015416 77 NSSVKMSAVANNSVLDALCNNG--KFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGR-FKDAIEVFRKMGEY 153 (407)
Q Consensus 77 ~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~ 153 (407)
+ |.+..+|+.-..++...+ .+++++.+++.+.+..+. +..+|+.-..++...|. ++++++.+.+++..
T Consensus 104 ~---PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr------Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~ 174 (331)
T 3dss_A 104 N---PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER------NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 174 (331)
T ss_dssp C---TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred C---CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 7 557888888877788888 489999999999998766 77788888888888898 59999999999987
Q ss_pred CCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015416 154 RCSPDTLSFNNLIDQLCKN--------------GMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFE 206 (407)
Q Consensus 154 ~~~~~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 206 (407)
. +.|...|+.....+... +.++++++.+..++... +-|...|+-+-..+.+
T Consensus 175 ~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 175 N-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGA 239 (331)
T ss_dssp C-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHS
T ss_pred C-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 6 56888888887777665 45788999999988743 3356666544444443
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.88 E-value=4.6e-08 Score=72.23 Aligned_cols=100 Identities=13% Similarity=0.073 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHH
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANN 88 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
+...|..+...+.+.|++++|+..|++..+. .|.+...|..++.++...|++++|+..|++++..+ +.+...|.
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~ 76 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD---PNFVRAYI 76 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCcHHHHH
Confidence 3456778888899999999999999999886 34577889999999999999999999999999877 44678888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC
Q 015416 89 SVLDALCNNGKFDEALKLFDRMKNEH 114 (407)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~~~~~~ 114 (407)
.+..++...|++++|...|+++.+..
T Consensus 77 ~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 77 RKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 89999999999999999999988765
No 152
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.88 E-value=6.9e-08 Score=75.04 Aligned_cols=98 Identities=7% Similarity=-0.038 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 015416 194 EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKAL 273 (407)
Q Consensus 194 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 273 (407)
...+..+...+...|++++|+..|++.++.. +.+...|..++.+|...|++++|+..|++.+...+.+...|..+..+|
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455556666666666666666666666532 235556666666666666666666666666665555666666666677
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 015416 274 SDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 274 ~~~g~~~~A~~~~~~~~~~ 292 (407)
...|++++|+..|++++..
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 7777777777777666665
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.87 E-value=1.3e-07 Score=69.70 Aligned_cols=95 Identities=13% Similarity=0.047 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 015416 196 TYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSD 275 (407)
Q Consensus 196 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 275 (407)
.+..+...+...|++++|...|++.++.. +.+...|..++.+|...|++++|+..|++.....|.+...+..++.++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34444445555555555555555555432 22344555555555555555555555555555444455555555555555
Q ss_pred cCCHHHHHHHHHHHHh
Q 015416 276 GGKLDEILEIVGGILD 291 (407)
Q Consensus 276 ~g~~~~A~~~~~~~~~ 291 (407)
.|++++|+..|++++.
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 5555555555555554
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.86 E-value=5.3e-08 Score=73.66 Aligned_cols=97 Identities=10% Similarity=-0.050 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 015416 195 YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALS 274 (407)
Q Consensus 195 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 274 (407)
..+..+...+...|++++|...|+++.... +.+...|..++.+|...|++++|...|+++....|.++..+..++.+|.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 344555566666666667766666666542 3355566666666777777777777777766655666666666777777
Q ss_pred hcCCHHHHHHHHHHHHhc
Q 015416 275 DGGKLDEILEIVGGILDD 292 (407)
Q Consensus 275 ~~g~~~~A~~~~~~~~~~ 292 (407)
..|++++|+..|++++..
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 777777777777766654
No 155
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.86 E-value=8.8e-07 Score=80.49 Aligned_cols=61 Identities=7% Similarity=0.015 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC--CC--CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 015416 161 SFNNLIDQLCKNGMLAEAEELYGEMSDK--GV--NPD-EYTYGLLMDACFEVNRVDDGATYFRKMV 221 (407)
Q Consensus 161 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~--~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 221 (407)
++..++..|...|++++|..+++++... +. .+. ..++..++..|...|++++|..++++..
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3444444555555555555554444321 00 111 2334444445555555555555554443
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.86 E-value=2.1e-07 Score=67.30 Aligned_cols=97 Identities=13% Similarity=0.040 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 015416 195 YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALS 274 (407)
Q Consensus 195 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 274 (407)
..+..++..+...|++++|...|++..... +.+...+..++..+...|++++|...+++.....+.+...+..++.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 344555555666666666666666665532 2345566666666666666666666666666655555666666666666
Q ss_pred hcCCHHHHHHHHHHHHhc
Q 015416 275 DGGKLDEILEIVGGILDD 292 (407)
Q Consensus 275 ~~g~~~~A~~~~~~~~~~ 292 (407)
..|++++|...|+++...
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 666666666666666654
No 157
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.85 E-value=5.1e-07 Score=82.09 Aligned_cols=201 Identities=9% Similarity=0.014 Sum_probs=141.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCccccc-----------cchHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCC
Q 015416 91 LDALCNNGKFDEALKLFDRMKNEHNPPKRLAVN-----------LGSFNVMADGYCGQGRFKDAIEVFRKMGEYRC-SPD 158 (407)
Q Consensus 91 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~ 158 (407)
...+.+.|++++|++.|..+.+..+........ ..++..++..|...|++++|.+++..+....- .++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 445566677777777777776654433211100 11467789999999999999999988765210 112
Q ss_pred H----HHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CC--
Q 015416 159 T----LSFNNLIDQLCKNGMLAEAEELYGEMSD----KGVNPD-EYTYGLLMDACFEVNRVDDGATYFRKMVDS--GL-- 225 (407)
Q Consensus 159 ~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~-- 225 (407)
. .+.+.+...+...|+++.+..+++.... .+..+. ..++..++..|...|++++|..++.++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 2344445555567899999999988754 232333 567888999999999999999999988742 11
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 226 RP-NLAVYNRLVGKLVQVGMLDEAKSFFDIMVK---KLKMD----DASYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 226 ~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
.+ ...++..++..|...|++++|..++++... ..+.+ ...+..++..+...|++++|...|.++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 12 244888999999999999999999998877 22222 34567777888899999999998887765
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.85 E-value=1.2e-07 Score=68.60 Aligned_cols=102 Identities=16% Similarity=0.076 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHH
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANN 88 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
+...+..+...+...|++++|...|+..... .+.+...+..++.++...|++++|...++++.... +.+...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~ 76 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK---PDWGKGYS 76 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC---cccHHHHH
Confidence 4566777888888899999999999988885 34467788888888888999999999999888876 44677788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 015416 89 SVLDALCNNGKFDEALKLFDRMKNEHNP 116 (407)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 116 (407)
.++.++...|++++|...|++..+..+.
T Consensus 77 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 77 RKAAALEFLNRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 8888888899999999999888876543
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.84 E-value=5.1e-08 Score=72.14 Aligned_cols=111 Identities=12% Similarity=0.104 Sum_probs=72.2
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc-ccccc
Q 015416 47 GVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL-AVNLG 125 (407)
Q Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~ 125 (407)
..++..++..+.+.|++++|+..|+++++.+ |.+..+|..+..+|...|++++|+..|++.++..+..... ..-..
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~---p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD---PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 3456677778888888888888888887766 4466777778888888888888888888777654321100 00112
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSF 162 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 162 (407)
+|..+..++...|++++|++.|++.+.. .|+....
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 4555666666777777777777766653 2554443
No 160
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.83 E-value=9.7e-08 Score=72.20 Aligned_cols=101 Identities=12% Similarity=-0.048 Sum_probs=91.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Q 015416 228 NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKG 307 (407)
Q Consensus 228 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 307 (407)
+...+..++..+...|++++|...|+++....|.+...|..++.+|...|++++|+..|++++... |.+...+..++.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHH
Confidence 344777888999999999999999999999888899999999999999999999999999999974 667778889999
Q ss_pred HHhhcCcHHHHHHHHHHHHHhhH
Q 015416 308 ELSKEGREEEVVKLMEKKEREKA 330 (407)
Q Consensus 308 ~~~~~g~~~~A~~~~~~~~~~~~ 330 (407)
+|...|++++|...+++.....+
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999876554
No 161
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.83 E-value=4.5e-06 Score=76.92 Aligned_cols=294 Identities=8% Similarity=-0.015 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCCchhhHHH
Q 015416 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGM-EEEAMECYNEAVGENSSVKMSAVANNS 89 (407)
Q Consensus 11 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (407)
.+|...+..+-. |+++.+..+|+..... .|+...|...+....+.+. .+....+|+.++..-..-+.+...|..
T Consensus 16 ~vyer~l~~~P~-~~~e~~~~iferal~~----~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 16 AIMEHARRLYMS-KDYRSLESLFGRCLKK----SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHSTT----CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHhcc----CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 456666666654 8899999999999874 3699999999988888774 466778888887641111446778888
Q ss_pred HHHHHH----hcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHH-------------hcCCHHHHHHHHHHHhh
Q 015416 90 VLDALC----NNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYC-------------GQGRFKDAIEVFRKMGE 152 (407)
Q Consensus 90 l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~g~~~~A~~~~~~~~~ 152 (407)
.+..+. ..++.+.+.++|++++.. | +.. -...|......-. ..+.+..|..+++.+..
T Consensus 91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P-~~~---~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~ 165 (493)
T 2uy1_A 91 YIEEEGKIEDEQTRIEKIRNGYMRALQT-P-MGS---LSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQP 165 (493)
T ss_dssp HHHHTSSCSSHHHHHHHHHHHHHHHHTS-C-CTT---HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHhC-h-hhh---HHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 887654 246788999999999873 2 111 1112222211110 11223334444444432
Q ss_pred CCCCCCHHHHHHHHHHHHHcC--C-----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 015416 153 YRCSPDTLSFNNLIDQLCKNG--M-----LAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGL 225 (407)
Q Consensus 153 ~~~~~~~~~~~~l~~~~~~~g--~-----~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 225 (407)
.--..+...|...+..-...+ - ...+..+|++++.. .+.+...|...+..+...|+++.|..+|++....
T Consensus 166 ~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-- 242 (493)
T 2uy1_A 166 LIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-- 242 (493)
T ss_dssp HHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--
Confidence 100123445655554432221 1 34567899998875 3556788888888899999999999999999986
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 226 RPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKL-------------KMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 226 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
+.+...|.. |......++. ++.+.+.. +.....|...+..+.+.+..+.|..+|.++ ..
T Consensus 243 P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~ 314 (493)
T 2uy1_A 243 SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN 314 (493)
T ss_dssp CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT
T ss_pred CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC
Confidence 334333332 2222111221 22222210 112356777778777888899999999999 42
Q ss_pred CCCCCcHHHHHHHHHHHhhcC-cHHHHHHHHHHHHH
Q 015416 293 GGIEFSEELQEFVKGELSKEG-REEEVVKLMEKKER 327 (407)
Q Consensus 293 ~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 327 (407)
. +.+...|...+..-.+.| +.+.|..+++...+
T Consensus 315 ~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~ 348 (493)
T 2uy1_A 315 E--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLL 348 (493)
T ss_dssp S--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred C--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 1 234555654454444444 69999999998875
No 162
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.83 E-value=9.2e-08 Score=70.74 Aligned_cols=96 Identities=14% Similarity=0.181 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCC----HHHHHH
Q 015416 196 TYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK---LKMD----DASYKF 268 (407)
Q Consensus 196 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~----~~~~~~ 268 (407)
.+..++..+.+.|++++|+..|+++++.. +.+..+|..++.+|...|++++|+..+++.++. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34445555555555555555555555432 223445555555555555555555555555541 1111 124555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 269 MMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 269 l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
++.++...|++++|++.|++.+..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 556666666666666666666553
No 163
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.81 E-value=6.9e-08 Score=77.64 Aligned_cols=131 Identities=12% Similarity=-0.014 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCc----------------chHHHHHHHHHHcCCHHHHHHHHHHH
Q 015416 10 PVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDG----------------VVYGSLMKGYFMKGMEEEAMECYNEA 73 (407)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~ 73 (407)
...+..+...+...|++++|+..|++..+.. +.+. .+|..++.+|...|++++|+..|+++
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF---IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3457778889999999999999999999852 2233 78899999999999999999999999
Q ss_pred HhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHH-HHHHHHhh
Q 015416 74 VGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAI-EVFRKMGE 152 (407)
Q Consensus 74 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~ 152 (407)
+... +.+..++..+..+|...|++++|...|++..+..+. +..++..+..++...++..++. ..|..+..
T Consensus 115 l~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 115 LKID---KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN------NLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHS---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHhC---cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9986 557888999999999999999999999999988654 5667888888888887777766 45555544
No 164
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.81 E-value=1.1e-07 Score=73.76 Aligned_cols=103 Identities=10% Similarity=0.018 Sum_probs=83.1
Q ss_pred cCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhH
Q 015416 8 ADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVAN 87 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (407)
.+...|..+...+.+.|++++|+..|++..+. .+.+...|..++.+|...|++++|+..|++++..+ +.+...|
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~ 82 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD---PKYSKAW 82 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHH
Confidence 35566788888888888888888888888886 34477788888888888888888888888888876 4467788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 015416 88 NSVLDALCNNGKFDEALKLFDRMKNEHNP 116 (407)
Q Consensus 88 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 116 (407)
..+..+|...|++++|...|+++++..+.
T Consensus 83 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 83 SRLGLARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 88888888888888888888888877544
No 165
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=3.9e-07 Score=69.03 Aligned_cols=97 Identities=10% Similarity=0.012 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 015416 194 EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPN----LAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFM 269 (407)
Q Consensus 194 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 269 (407)
...+..+...+...|++++|...|++..+. .|+ ...+..++.+|...|++++|...+++.....+.+...+..+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 344445555555555555555555555542 233 34555566666666666666666666665445555666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 015416 270 MKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 270 ~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
..++...|++++|+..|++++..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 66666666666666666666654
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.80 E-value=1.6e-07 Score=70.34 Aligned_cols=99 Identities=7% Similarity=-0.028 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 015416 193 DEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKA 272 (407)
Q Consensus 193 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 272 (407)
+...+..+...+...|++++|...|.+++... +.+...+..++.++...|++++|...+++.....|.+...+..++.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34555556666666666666666666665532 23455666666666666666666666666666555566666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 015416 273 LSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 273 ~~~~g~~~~A~~~~~~~~~~ 292 (407)
|...|++++|+..|++++..
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 66666666666666666553
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.80 E-value=2.7e-07 Score=69.04 Aligned_cols=104 Identities=11% Similarity=0.022 Sum_probs=94.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 015416 226 RPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFV 305 (407)
Q Consensus 226 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 305 (407)
+.+...+..++..+...|++++|...|+......+.+...+..++.++...|++++|+..|++++... +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHHHHH
Confidence 34678999999999999999999999999999888889999999999999999999999999999974 5677889999
Q ss_pred HHHHhhcCcHHHHHHHHHHHHHhhHH
Q 015416 306 KGELSKEGREEEVVKLMEKKEREKAE 331 (407)
Q Consensus 306 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 331 (407)
+.+|...|++++|...+++.....+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 99999999999999999998876544
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.77 E-value=1.3e-07 Score=69.91 Aligned_cols=110 Identities=7% Similarity=0.120 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------HHHHH
Q 015416 195 YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMD-------DASYK 267 (407)
Q Consensus 195 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~ 267 (407)
..+..+...+...|++++|...|+++.+.. +.+...+..++..|...|++++|...++++....+.+ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345555566666666666666666666532 3345566666666666666666666666666522222 55666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Q 015416 268 FMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGE 308 (407)
Q Consensus 268 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 308 (407)
.++.++...|++++|...|+++... .|+......+..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE---HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh---CCCHHHHHHHHHH
Confidence 6777777777777777777777664 3344444444433
No 169
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.76 E-value=1.3e-07 Score=69.25 Aligned_cols=90 Identities=8% Similarity=-0.011 Sum_probs=42.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCc
Q 015416 235 LVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGR 314 (407)
Q Consensus 235 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 314 (407)
++..+.+.|++++|...|++++...|.+...+..++.++...|++++|+..|+++++.. |.+...+..++.+|.+.|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCC
Confidence 34444444455555555544444444444444444555555555555555555444432 2333444444444445555
Q ss_pred HHHHHHHHHHHH
Q 015416 315 EEEVVKLMEKKE 326 (407)
Q Consensus 315 ~~~A~~~~~~~~ 326 (407)
+++|...+++..
T Consensus 101 ~~~A~~~~~~al 112 (121)
T 1hxi_A 101 ANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555444443
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.75 E-value=7.5e-08 Score=70.54 Aligned_cols=95 Identities=11% Similarity=-0.050 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHH
Q 015416 49 VYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFN 128 (407)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (407)
.+..++..+.+.|++++|+..|+++++.+ |.+...|..+..++...|++++|+..|+++++..+. +..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~------~~~~~~ 89 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE---PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK------DIAVHA 89 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHH
Confidence 34444555555555555555555555544 234455555555555555555555555555554433 333455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhh
Q 015416 129 VMADGYCGQGRFKDAIEVFRKMGE 152 (407)
Q Consensus 129 ~l~~~~~~~g~~~~A~~~~~~~~~ 152 (407)
.+..+|...|++++|+..|++.++
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 90 ALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555555544
No 171
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.75 E-value=1.2e-07 Score=67.93 Aligned_cols=104 Identities=23% Similarity=0.158 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHH
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANN 88 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
+...|..+...+...|++++|...|++..+. .+.+...|..++.++...|++++|+..|+++++..|. ..+...+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~ 80 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED-EYNKDVWA 80 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-TTCHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cchHHHHH
Confidence 3445566667777777777777777777764 2335566777777777777777777777777766521 11466667
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHhcCCC
Q 015416 89 SVLDALCNN-GKFDEALKLFDRMKNEHNP 116 (407)
Q Consensus 89 ~l~~~~~~~-~~~~~A~~~~~~~~~~~~~ 116 (407)
.+..++... |++++|.+.|..+....+.
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 777777777 7777777777777766543
No 172
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.74 E-value=2.4e-07 Score=66.33 Aligned_cols=97 Identities=12% Similarity=0.062 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHH
Q 015416 195 YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKM--DDASYKFMMKA 272 (407)
Q Consensus 195 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~ 272 (407)
..+..+...+...|++++|...|+++.+.. +.+...+..++..+...|++++|...|++.....+. +...+..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 344555556666666666666666665532 234555666666666666666666666666665455 56666666666
Q ss_pred HHhc-CCHHHHHHHHHHHHhc
Q 015416 273 LSDG-GKLDEILEIVGGILDD 292 (407)
Q Consensus 273 ~~~~-g~~~~A~~~~~~~~~~ 292 (407)
+... |++++|++.++++...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 6666 6666666666666654
No 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=8.5e-07 Score=67.09 Aligned_cols=110 Identities=14% Similarity=0.070 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 015416 158 DTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPD----EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYN 233 (407)
Q Consensus 158 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 233 (407)
+...+..+...+...|++++|+..|++..+. .|+ ...+..+..+|...|++++|...+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 3444555555555555555555555555542 233 3445555555555555555555555555432 22444555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 015416 234 RLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMM 270 (407)
Q Consensus 234 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 270 (407)
.++.+|...|++++|...|++.....|.+...+..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR 140 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 5555666666666666666665554444444444333
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.73 E-value=5.6e-08 Score=71.94 Aligned_cols=114 Identities=11% Similarity=0.158 Sum_probs=63.6
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-cccccch
Q 015416 48 VVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKR-LAVNLGS 126 (407)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~ 126 (407)
..|..++..+...|++++|+..|+++.... +.+...+..++.++...|++++|...|+++....+.... ......+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD---PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 345556666666666666666666666554 334555666666666666666666666666554321000 0000345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015416 127 FNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLI 166 (407)
Q Consensus 127 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 166 (407)
+..++.+|...|++++|.+.|++..... |+...+..+.
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~ 119 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHH
Confidence 5666666666666666666666666543 4544444433
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.71 E-value=1.2e-07 Score=72.97 Aligned_cols=141 Identities=13% Similarity=0.068 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccC---CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC---CCCch
Q 015416 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVS---DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSS---VKMSA 84 (407)
Q Consensus 11 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~ 84 (407)
.++..+...+...|++++|+..+++..+..+.... ...++..++..+...|++++|+..|++++...+. .....
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 45667777777778888887777777664111000 0135666777777777777777777776643210 01113
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 015416 85 VANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMG 151 (407)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 151 (407)
.++..+..++...|++++|...+++..+.............++..+..+|...|++++|.+.+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3455566666667777777776666554311100000012344445555555555555555555443
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.71 E-value=6.1e-07 Score=66.24 Aligned_cols=97 Identities=10% Similarity=0.110 Sum_probs=40.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHH
Q 015416 53 LMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMAD 132 (407)
Q Consensus 53 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (407)
++..+...|++++|+..|+++....|+.+.....+..++.++...|++++|...|+++.+..+.... ...++..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK---AAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT---HHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc---cHHHHHHHHH
Confidence 3444444444444444444444433211111133444444444444444444444444443322100 0223444444
Q ss_pred HHHhcCCHHHHHHHHHHHhh
Q 015416 133 GYCGQGRFKDAIEVFRKMGE 152 (407)
Q Consensus 133 ~~~~~g~~~~A~~~~~~~~~ 152 (407)
+|...|++++|...|+++..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 44444444444444444444
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.69 E-value=5.9e-07 Score=66.33 Aligned_cols=101 Identities=14% Similarity=0.079 Sum_probs=84.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCc---chHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHH
Q 015416 13 YSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDG---VVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNS 89 (407)
Q Consensus 13 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 89 (407)
+..+...+...|++++|...|+.+.+..| .+. ..+..++.++...|++++|+..|++++...|+.+....++..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYP---NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCS---SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCC---CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence 44567788899999999999999998633 344 588899999999999999999999999876432222667888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 015416 90 VLDALCNNGKFDEALKLFDRMKNEHNP 116 (407)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~~~~~~~~ 116 (407)
+..++...|++++|...|+++.+..+.
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999987644
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.64 E-value=7.3e-07 Score=81.64 Aligned_cols=128 Identities=9% Similarity=-0.031 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 015416 195 YTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPN---------------LAVYNRLVGKLVQVGMLDEAKSFFDIMVKKL 259 (407)
Q Consensus 195 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 259 (407)
..+..+...|.+.|++++|...|+++++.. +.+ ..+|..+..+|.+.|++++|+..+++++...
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 355566666666677777777776666532 111 4688899999999999999999999999977
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHH-HHHHH
Q 015416 260 KMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVK-LMEKK 325 (407)
Q Consensus 260 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~ 325 (407)
+.+..+|..+..+|...|++++|+..|+++++.. +.+...+..+..++.+.|+.+++.+ .+++|
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999863 4555688888888888888887764 33444
No 179
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.64 E-value=5.8e-07 Score=82.28 Aligned_cols=121 Identities=12% Similarity=0.065 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCC---------------cchHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 015416 12 VYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSD---------------GVVYGSLMKGYFMKGMEEEAMECYNEAVGE 76 (407)
Q Consensus 12 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 76 (407)
.|..+...|.+.|++++|+..|++..+..+ .+ ..+|..+..+|.+.|++++|+..|++++..
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p---~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLE---MEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHT---TCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhc---ccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 456666677777777777777777766422 12 356666777777777777777777777766
Q ss_pred CCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHH
Q 015416 77 NSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAI 144 (407)
Q Consensus 77 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 144 (407)
+ +.+..+|..+..+|...|++++|+..|+++++..+. +..++..+..++.+.++++++.
T Consensus 347 ~---p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~------~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 D---SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ------NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp S---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----------CHHHHHHHHHHHHHHHHHHH
T ss_pred C---CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHHHHHH
Confidence 5 335666667777777777777777777777665443 4456666666666666666554
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.62 E-value=2.3e-07 Score=71.38 Aligned_cols=95 Identities=15% Similarity=0.137 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CC---CCHH
Q 015416 196 TYGLLMDACFEVNRVDDGATYFRKMVDS----GLRP-NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK---LK---MDDA 264 (407)
Q Consensus 196 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~ 264 (407)
++..+...+...|++++|...+++..+. +.++ ...++..++..+...|++++|...+++.... .. ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444444444444444444444444321 0000 0223444445555555555555555544430 00 0122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015416 265 SYKFMMKALSDGGKLDEILEIVGGIL 290 (407)
Q Consensus 265 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 290 (407)
++..+...+...|++++|.+.+++..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34444444444455555544444443
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.61 E-value=5.1e-07 Score=69.84 Aligned_cols=64 Identities=22% Similarity=0.225 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 229 LAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 229 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
..+|..++.+|...|++++|+..+++++...|.+..+|..++.+|...|++++|+..|++++..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4577888888888888888888888888877778888888888888888888888888888876
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.61 E-value=1.1e-07 Score=69.21 Aligned_cols=86 Identities=19% Similarity=0.256 Sum_probs=55.9
Q ss_pred cCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015416 207 VNRVDDGATYFRKMVDSG--LRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILE 284 (407)
Q Consensus 207 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 284 (407)
.|++++|+..|+++++.+ -+.+..++..++.+|...|++++|...|+++....|.+..++..++.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 456666777777766632 122344666777777777777777777777777666667777777777777777777777
Q ss_pred HHHHHHhc
Q 015416 285 IVGGILDD 292 (407)
Q Consensus 285 ~~~~~~~~ 292 (407)
.|++++..
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777665
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.58 E-value=8.3e-07 Score=78.71 Aligned_cols=122 Identities=7% Similarity=-0.062 Sum_probs=89.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 015416 197 YGLLMDACFEVNRVDDGATYFRKMVDS---------------GLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKM 261 (407)
Q Consensus 197 ~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 261 (407)
+..+...+.+.|++++|+..|+++++. --+.+..+|..++.+|.+.|++++|+..++++++..+.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 444455555555555555555555430 01223458888899999999999999999999987777
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHH
Q 015416 262 DDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVK 320 (407)
Q Consensus 262 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 320 (407)
+..++..+..+|...|++++|+..|+++++.. +.+...+..+..++...++.+++.+
T Consensus 306 ~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 306 NTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999998863 4566677777777777777666654
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.56 E-value=6.9e-07 Score=69.09 Aligned_cols=99 Identities=13% Similarity=0.120 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhC--------CCC-------CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 49 VYGSLMKGYFMKGMEEEAMECYNEAVGE--------NSS-------VKMSAVANNSVLDALCNNGKFDEALKLFDRMKNE 113 (407)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 113 (407)
.+...+..+.+.|++++|+..|.+++.. .+. .+.+...|..+..+|.+.|++++|+..++++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4555556666666666666666665543 100 0112344555555555555555555555555554
Q ss_pred CCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 015416 114 HNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY 153 (407)
Q Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 153 (407)
.+. +..+|..++.+|...|++++|...|++.+..
T Consensus 93 ~p~------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 93 EET------NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp STT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCc------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 332 3445555555555555555555555555544
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.56 E-value=2.1e-07 Score=85.56 Aligned_cols=124 Identities=15% Similarity=0.126 Sum_probs=99.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHH
Q 015416 13 YSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLD 92 (407)
Q Consensus 13 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (407)
+..+...+.+.|++++|++.|++..+. .+.+..+|..++.+|.+.|++++|+..|+++++.+ +.+..++..+..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~lg~ 82 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD---KKYIKGYYRRAA 82 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCCHHHHHHHHH
Confidence 344455667889999999999999986 34468899999999999999999999999999987 456788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHH--HHhcCCHHHHHHHHH
Q 015416 93 ALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADG--YCGQGRFKDAIEVFR 148 (407)
Q Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 148 (407)
+|...|++++|.+.|+++.+..+. +..++..+..+ +.+.|++++|++.++
T Consensus 83 ~~~~~g~~~eA~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 83 SNMALGKFRAALRDYETVVKVKPH------DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTT------CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999987654 44466666666 888899999999988
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.56 E-value=6.8e-07 Score=79.25 Aligned_cols=123 Identities=12% Similarity=0.082 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-------------CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 015416 49 VYGSLMKGYFMKGMEEEAMECYNEAVGENSS-------------VKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHN 115 (407)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 115 (407)
.|..++..+.+.|++++|+..|+++++..+. .+.+..+|..+..+|.+.|++++|+..++++++..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 4667777788888888888888877752100 022334455555555555555555555555554432
Q ss_pred CCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 015416 116 PPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEA 178 (407)
Q Consensus 116 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 178 (407)
. +..++..+..+|...|++++|+..|++..+.. +.+...+..+..++...++.+++
T Consensus 305 ~------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 305 S------NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred h------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 2 33445555555555555555555555554432 22344444444444444444333
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.56 E-value=2.8e-07 Score=80.83 Aligned_cols=151 Identities=13% Similarity=0.043 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 015416 159 TLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGK 238 (407)
Q Consensus 159 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 238 (407)
...+..+...+.+.|++++|+..|++++.. .|+... +...++.+++...+. ..+|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 345666677777777888888888777663 333321 112222333222211 1378889999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH-HhhcCcHHH
Q 015416 239 LVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGE-LSKEGREEE 317 (407)
Q Consensus 239 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~ 317 (407)
|.+.|++++|+..+++.+...+.+..++..+..+|...|++++|+..|++++... +.+...+..+..+ ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999777889999999999999999999999999998763 3445566666655 334566777
Q ss_pred HHHHHHHHHHhhH
Q 015416 318 VVKLMEKKEREKA 330 (407)
Q Consensus 318 A~~~~~~~~~~~~ 330 (407)
+...++++....+
T Consensus 318 a~~~~~~~l~~~p 330 (338)
T 2if4_A 318 QKEMYKGIFKGKD 330 (338)
T ss_dssp -------------
T ss_pred HHHHHHHhhCCCC
Confidence 7888887765543
No 188
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.54 E-value=2.7e-06 Score=64.33 Aligned_cols=96 Identities=18% Similarity=0.038 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------
Q 015416 232 YNRLVGKLVQVGMLDEAKSFFDIMVKKLKM-------DD-----ASYKFMMKALSDGGKLDEILEIVGGILDD------- 292 (407)
Q Consensus 232 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------- 292 (407)
+...+..+...|++++|+..|++.+...|. +. ..|..+..++.+.|++++|+..++++++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 334444455555555555555555552222 22 26666666666666666666666666654
Q ss_pred CCCCCcHHHH----HHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 293 GGIEFSEELQ----EFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 293 ~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
+ |-+...| ...+.+|...|++++|+..|++..+..
T Consensus 94 ~--pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 94 N--QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp T--STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred C--CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 2 3334455 666677777777777777777766443
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.53 E-value=1.4e-07 Score=68.57 Aligned_cols=92 Identities=13% Similarity=0.042 Sum_probs=70.1
Q ss_pred hcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHH
Q 015416 22 RDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFD 101 (407)
Q Consensus 22 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 101 (407)
..|++++|+..|++..+..+..+.+..+|..++.+|...|++++|+..|+++++.+ |.+..++..+..++...|+++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF---PNHQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCchHHHHHHHHHHHHcCCHH
Confidence 46788899999998887410134567788889999999999999999999998876 446778888888899999999
Q ss_pred HHHHHHHHHHhcCCC
Q 015416 102 EALKLFDRMKNEHNP 116 (407)
Q Consensus 102 ~A~~~~~~~~~~~~~ 116 (407)
+|+..|++.+...+.
T Consensus 79 ~A~~~~~~al~~~p~ 93 (117)
T 3k9i_A 79 QGVELLLKIIAETSD 93 (117)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999988877544
No 190
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.52 E-value=3.5e-07 Score=84.17 Aligned_cols=123 Identities=11% Similarity=0.079 Sum_probs=78.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 015416 165 LIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244 (407)
Q Consensus 165 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 244 (407)
++..+.+.|++++|+..|+++++.. +.+...+..+..+|...|++++|+..++++.+.. +.+..++..++.+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 3445566777777777777777642 2246677777777777777777777777777643 3355677777777777777
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHH
Q 015416 245 LDEAKSFFDIMVKKLKMDDASYKFMMKA--LSDGGKLDEILEIVGGI 289 (407)
Q Consensus 245 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~ 289 (407)
+++|...|+++.+..|.+...+..+..+ +.+.|++++|++.+++.
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~ 136 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 136 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------C
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 7777777777777555555555555555 66667777777776653
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.51 E-value=1.9e-06 Score=65.10 Aligned_cols=95 Identities=14% Similarity=0.036 Sum_probs=67.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCC------CC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------C
Q 015416 198 GLLMDACFEVNRVDDGATYFRKMVDSGLR------PN-----LAVYNRLVGKLVQVGMLDEAKSFFDIMVKK-------L 259 (407)
Q Consensus 198 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~ 259 (407)
......+...|++++|+..|++.++.... .+ ...|..+..++...|++++|+..+++.+.. .
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 33444444555555555555555442100 01 237888888888888988888888888886 6
Q ss_pred CCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 260 KMDDASY----KFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 260 ~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
|.+...| ...+.++...|++++|+..|+++++.
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6677788 99999999999999999999998875
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.44 E-value=6.7e-07 Score=78.36 Aligned_cols=150 Identities=12% Similarity=0.099 Sum_probs=87.6
Q ss_pred ccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015416 123 NLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMD 202 (407)
Q Consensus 123 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 202 (407)
....+..+...+.+.|++++|+..|++.+... |+... +...+++.++...+. ...|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 34467788889999999999999999988753 44332 222333444433221 136788889
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HhcCCHHH
Q 015416 203 ACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKAL-SDGGKLDE 281 (407)
Q Consensus 203 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~ 281 (407)
+|.+.|++++|+..++++++.. +.+...|..++.+|...|++++|...|+++....|.+...+..+.... ...+..+.
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998753 346778999999999999999999999999886666677777776663 34567788
Q ss_pred HHHHHHHHHhc
Q 015416 282 ILEIVGGILDD 292 (407)
Q Consensus 282 A~~~~~~~~~~ 292 (407)
+..+|.+++..
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 88888888765
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.40 E-value=2e-05 Score=73.91 Aligned_cols=174 Identities=9% Similarity=-0.030 Sum_probs=118.7
Q ss_pred hcCCh-hhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCC----------HHHHHHHHHHHHhCCCCCCCchhhHHHH
Q 015416 22 RDGDS-DGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGM----------EEEAMECYNEAVGENSSVKMSAVANNSV 90 (407)
Q Consensus 22 ~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~l 90 (407)
+.|.+ ++|++.++.+... .|-+..+|+.-..++...|+ +++++..++.++..+ +.+..+|..-
T Consensus 40 ~~~~~~eeal~~~~~~l~~---nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~---pK~y~aW~hR 113 (567)
T 1dce_A 40 QAGELDESVLELTSQILGA---NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN---PKSYGTWHHR 113 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH---CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC---CCCHHHHHHH
Confidence 34443 5678888888875 33466677777777766666 788888888888776 4567777777
Q ss_pred HHHHHhcC--CHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015416 91 LDALCNNG--KFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQG-RFKDAIEVFRKMGEYRCSPDTLSFNNLID 167 (407)
Q Consensus 91 ~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 167 (407)
..++.+.+ ++++++..++++.+..+. +..+|+.-..++.+.| .++++++.++++++.. +.+...|+....
T Consensus 114 ~w~l~~l~~~~~~~el~~~~k~l~~d~~------N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ 186 (567)
T 1dce_A 114 CWLLSRLPEPNWARELELCARFLEADER------NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSC 186 (567)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHhhccc------cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHH
Confidence 77777777 668888888888877655 6667777777777777 7788888888877765 456677777776
Q ss_pred HHHHc--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 015416 168 QLCKN--------------GMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNR 209 (407)
Q Consensus 168 ~~~~~--------------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 209 (407)
++.+. +.++++++.+++++... +-+...|.-+...+...+.
T Consensus 187 ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 187 LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred HHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 66653 34566777777766532 2245556555555555554
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.40 E-value=3.4e-05 Score=72.33 Aligned_cols=174 Identities=9% Similarity=-0.017 Sum_probs=140.0
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 015416 139 RFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGM----------LAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVN 208 (407)
Q Consensus 139 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 208 (407)
..++|++.+++++... |-+..+|+.-..++...|+ +++++..++++.+.. +-+..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 3467788898888865 4566778887777777777 899999999998754 336778888888888888
Q ss_pred --ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc---------
Q 015416 209 --RVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG-MLDEAKSFFDIMVKKLKMDDASYKFMMKALSDG--------- 276 (407)
Q Consensus 209 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 276 (407)
+++++++.++++.+.. +-+..+|+.-...+...| .++++++.+.++++..+.+..+|+....++...
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 6699999999999865 447788888888888888 889999999999988888889998888887763
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHH
Q 015416 277 -----GKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEE 317 (407)
Q Consensus 277 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 317 (407)
+.++++++.+.+++... |-+...|..+...+.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~--P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC--SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhC--CCCccHHHHHHHHHhcCCCccc
Confidence 56799999999999874 6677788888888888777444
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.40 E-value=1.9e-06 Score=62.21 Aligned_cols=80 Identities=14% Similarity=0.096 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 212 DGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 212 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
.++..|+++.+.. +.+...+..++..|...|++++|...|++.....|.+...+..++.+|...|++++|+..|++++.
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3555566665532 334556666666666667777777777666665555666666666667677777777776666655
Q ss_pred c
Q 015416 292 D 292 (407)
Q Consensus 292 ~ 292 (407)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 3
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.38 E-value=3.3e-06 Score=77.33 Aligned_cols=126 Identities=9% Similarity=-0.018 Sum_probs=97.9
Q ss_pred HHHhcCChHHHHHHHHHHHHC---CCCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCC----CHHHHH
Q 015416 203 ACFEVNRVDDGATYFRKMVDS---GLRP---N-LAVYNRLVGKLVQVGMLDEAKSFFDIMVK----KLKM----DDASYK 267 (407)
Q Consensus 203 ~~~~~g~~~~a~~~~~~~~~~---~~~~---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~----~~~~~~ 267 (407)
.+...|++++|+.++++.++. -+.| + ..+++.|+..|...|++++|..++++.+. ...+ ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999988742 1112 2 34889999999999999999999999887 1222 345789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc----CC--CCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHh
Q 015416 268 FMMKALSDGGKLDEILEIVGGILDD----GG--IEFSEELQEFVKGELSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 268 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 328 (407)
.|+..|...|++++|+.+++++++. .| .+........+..++...|++++|..+++++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988753 12 2333446677888899999999999999998643
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.37 E-value=2.6e-06 Score=77.98 Aligned_cols=129 Identities=12% Similarity=-0.031 Sum_probs=74.3
Q ss_pred HHhcCChhhHHHHHHHHHHhhCCc-----cCCcchHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCCchhhHHH
Q 015416 20 FVRDGDSDGVFRLFEELKEKLGGV-----VSDGVVYGSLMKGYFMKGMEEEAMECYNEAVG-----ENSSVKMSAVANNS 89 (407)
Q Consensus 20 ~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~~~ 89 (407)
+..+|++++|+.++++..+....+ +....+++.|+.+|...|++++|+.++++++. .|++.+....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 446677777777777766542111 11234667777777777777777777776653 23333444556777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHh
Q 015416 90 VLDALCNNGKFDEALKLFDRMKNE-----HNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMG 151 (407)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 151 (407)
|..+|...|++++|..+++++++. |+..+ ....+.+.+..++...+.+++|+.+|..+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp---~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP---ITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777766542 22110 022233444555555555555555555553
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.36 E-value=1.1e-05 Score=60.45 Aligned_cols=48 Identities=10% Similarity=0.007 Sum_probs=19.8
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Q 015416 137 QGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCK----NGMLAEAEELYGEMSD 187 (407)
Q Consensus 137 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 187 (407)
.+++++|+.+|++..+.| +...+..|...|.. .+++++|...|++..+
T Consensus 74 ~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 74 KKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 344444444444444332 33333344444443 3444444444444443
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.36 E-value=1e-05 Score=60.49 Aligned_cols=112 Identities=12% Similarity=0.046 Sum_probs=97.6
Q ss_pred cCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHh----cC
Q 015416 23 DGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCN----NG 98 (407)
Q Consensus 23 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 98 (407)
.+++++|+..|++..+. + ++... |...|...+.+++|+++|+++.+.+ +...+..|..+|.. .+
T Consensus 8 ~~d~~~A~~~~~~aa~~--g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g-----~~~a~~~Lg~~y~~G~g~~~ 75 (138)
T 1klx_A 8 KKDLKKAIQYYVKACEL--N---EMFGC--LSLVSNSQINKQKLFQYLSKACELN-----SGNGCRFLGDFYENGKYVKK 75 (138)
T ss_dssp HHHHHHHHHHHHHHHHT--T---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSCC
T ss_pred ccCHHHHHHHHHHHHcC--C---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHcCCCCCc
Confidence 35789999999999986 5 44444 8888888899999999999999876 67888899999988 89
Q ss_pred CHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHh----cCCHHHHHHHHHHHhhCC
Q 015416 99 KFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCG----QGRFKDAIEVFRKMGEYR 154 (407)
Q Consensus 99 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 154 (407)
++++|+..|++..+.+ ++.++..|..+|.. .+++++|..+|++..+.|
T Consensus 76 d~~~A~~~~~~Aa~~g--------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 76 DLRKAAQYYSKACGLN--------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHcCC--------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 9999999999999876 55688999999999 899999999999999876
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.33 E-value=4.5e-07 Score=64.92 Aligned_cols=90 Identities=16% Similarity=0.132 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc------HHHH
Q 015416 229 LAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFS------EELQ 302 (407)
Q Consensus 229 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~ 302 (407)
...+..++..+...|++++|...|++.....|.+...+..++.++...|++++|+..|++++... +.+ ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHHHH
Confidence 44566666667777777777777777766556666677777777777777777777777776642 222 3344
Q ss_pred HHHHHHHhhcCcHHHHHH
Q 015416 303 EFVKGELSKEGREEEVVK 320 (407)
Q Consensus 303 ~~l~~~~~~~g~~~~A~~ 320 (407)
..++.++...|+.++|..
T Consensus 82 ~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHhHhhhHh
Confidence 445555555554444433
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.27 E-value=4.5e-07 Score=64.89 Aligned_cols=62 Identities=18% Similarity=0.311 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 49 VYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNE 113 (407)
Q Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 113 (407)
.|..++..+...|++++|+..|++++... +.+...+..+..++...|++++|+..|+++++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ---PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 44444444555555555555555554443 223444444455555555555555555555444
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.24 E-value=2.2e-05 Score=53.48 Aligned_cols=80 Identities=16% Similarity=0.172 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 015416 230 AVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGEL 309 (407)
Q Consensus 230 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (407)
..+..++..+...|++++|...|++.....+.+..++..+..++...|++++|+..|+++.... +.+...+..++.++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHH
Confidence 4556666666667777777777776666555566666677777777777777777777766653 34455555555555
Q ss_pred hh
Q 015416 310 SK 311 (407)
Q Consensus 310 ~~ 311 (407)
.+
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.21 E-value=2.1e-05 Score=56.55 Aligned_cols=83 Identities=11% Similarity=0.037 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 015416 246 DEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKK 325 (407)
Q Consensus 246 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 325 (407)
+.|...|++.....|.+...+..++.+|...|++++|+..|++++... +.....+..++.+|...|++++|...+++.
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 357788888888778889999999999999999999999999999874 566778999999999999999999999998
Q ss_pred HHhhH
Q 015416 326 EREKA 330 (407)
Q Consensus 326 ~~~~~ 330 (407)
.....
T Consensus 80 l~~~~ 84 (115)
T 2kat_A 80 LAAAQ 84 (115)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 76544
No 204
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.20 E-value=6.8e-06 Score=57.58 Aligned_cols=64 Identities=11% Similarity=0.088 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 228 NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 228 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
+...+..++..|...|++++|+..|+++++..|.+..+|..++.+|...|++++|+..|++.+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555555566666666666666665554455555555566666666666666666655554
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.18 E-value=1.1e-05 Score=54.96 Aligned_cols=64 Identities=23% Similarity=0.381 Sum_probs=33.9
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 015416 48 VVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEH 114 (407)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 114 (407)
..+..+...+...|++++|+..|++++... +.+..++..+..++...|++++|...|++..+..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 344555555555555555555555555543 2234455555555555555555555555555543
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.15 E-value=3.8e-06 Score=63.36 Aligned_cols=94 Identities=15% Similarity=0.134 Sum_probs=59.4
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCH----------HHHHHHHHHHHhcCCCCCccccccchHH
Q 015416 59 MKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKF----------DEALKLFDRMKNEHNPPKRLAVNLGSFN 128 (407)
Q Consensus 59 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (407)
+.+.+++|++.++..++.+ |.+...|..+..++...+++ ++|+..|++.++..+. ...+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~---P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~------~~~A~~ 84 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN---PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK------KDEAVW 84 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC------cHHHHH
Confidence 4455666666666666665 33566666666666665543 4777777777776654 555677
Q ss_pred HHHHHHHhcC-----------CHHHHHHHHHHHhhCCCCCCHHHHH
Q 015416 129 VMADGYCGQG-----------RFKDAIEVFRKMGEYRCSPDTLSFN 163 (407)
Q Consensus 129 ~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~ 163 (407)
.+..+|...| ++++|++.|++.++.. |+...|.
T Consensus 85 ~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y~ 128 (158)
T 1zu2_A 85 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYL 128 (158)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHHH
Confidence 7777777664 6777777777776653 5544443
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.09 E-value=1.1e-05 Score=60.75 Aligned_cols=89 Identities=12% Similarity=0.063 Sum_probs=58.4
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 015416 208 NRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM----------LDEAKSFFDIMVKKLKMDDASYKFMMKALSDGG 277 (407)
Q Consensus 208 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 277 (407)
+.+++|.+.++...+.. +.+...|..++.++...++ +++|+..|++.++..|.+..+|..++.+|...|
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 44555555666555532 3345555555555555544 457777777777766667777778888777664
Q ss_pred -----------CHHHHHHHHHHHHhcCCCCCcHH
Q 015416 278 -----------KLDEILEIVGGILDDGGIEFSEE 300 (407)
Q Consensus 278 -----------~~~~A~~~~~~~~~~~~~~~~~~ 300 (407)
++++|++.|+++++. .|+..
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l---~P~~~ 125 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDE---QPDNT 125 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHH---CTTCH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHh---CCCCH
Confidence 788888888888885 45543
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.99 E-value=9.1e-05 Score=51.67 Aligned_cols=70 Identities=4% Similarity=-0.042 Sum_probs=61.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhH
Q 015416 259 LKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKA 330 (407)
Q Consensus 259 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 330 (407)
.|.++..+..++.+|...|++++|+..|+++++.+ +.+...+..++.+|...|++++|...+++..+...
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 35678899999999999999999999999999974 55677899999999999999999999999876543
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.94 E-value=0.0002 Score=61.97 Aligned_cols=50 Identities=14% Similarity=0.068 Sum_probs=33.9
Q ss_pred ccCCcchHHHHHHHHH--HcC---CHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHH
Q 015416 43 VVSDGVVYGSLMKGYF--MKG---MEEEAMECYNEAVGENSSVKMSAVANNSVLDALC 95 (407)
Q Consensus 43 ~~~~~~~~~~l~~~~~--~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (407)
.+.+...|...+++.. ..+ ...+|+.+|+++++.+|+ ....|..+..+|.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~---~a~A~A~la~a~~ 244 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE---FTYARAEKALVDI 244 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHH
Confidence 4567788888776654 333 357899999999998744 4566665555554
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.83 E-value=4.5e-06 Score=75.14 Aligned_cols=115 Identities=9% Similarity=-0.101 Sum_probs=94.7
Q ss_pred hcCCHHHHHHHHHHHHhcC----C--CCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 015416 275 DGGKLDEILEIVGGILDDG----G--IEFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAEAKAREAEAAEAAKRSAR 348 (407)
Q Consensus 275 ~~g~~~~A~~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (407)
..|++++|+.++++.++.. | .+....++..++.+|...|++++|..++++......+.. ...||..
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~l--------G~~Hp~~ 381 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHY--------PVYSLNV 381 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS--------CSSCHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHc--------CCCChHH
Confidence 4688999999999887641 1 122335788899999999999999999999987654432 3358888
Q ss_pred HHHHhhcCCCcCCCccccccccccChhhHhhHHHHhcCcccchhhhhhhhhhccccCC
Q 015416 349 AAIASLIPSKFGDKVGGTEMADNANANEAASVAEAQAGKEVNLEEATAVESASADANT 406 (407)
Q Consensus 349 ~~~~~~l~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (407)
...+..|+.+|..++ +++||+.+.+++........|.+||.+....+|+
T Consensus 382 a~~l~nLa~~~~~qg---------~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l 430 (433)
T 3qww_A 382 ASMWLKLGRLYMGLE---------NKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI 430 (433)
T ss_dssp HHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc---------CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 999999999999999 9999999999999999999999999988766653
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.77 E-value=1.2e-05 Score=72.36 Aligned_cols=121 Identities=7% Similarity=-0.064 Sum_probs=98.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC--C----CCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 015416 269 MMKALSDGGKLDEILEIVGGILDDGG--I----EFSEELQEFVKGELSKEGREEEVVKLMEKKEREKAEAKAREAEAAEA 342 (407)
Q Consensus 269 l~~~~~~~g~~~~A~~~~~~~~~~~~--~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 342 (407)
.+..+...|++++|+.+++++++... + +....++..++.+|...|++++|+.+++++........ -
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~l--------g 364 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF--------P 364 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHS--------C
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHc--------C
Confidence 34556678999999999999986521 1 22334778889999999999999999999987654432 3
Q ss_pred HHHHHHHHHHhhcCCCcCCCccccccccccChhhHhhHHHHhcCcccchhhhhhhhhhccccCC
Q 015416 343 AKRSARAAIASLIPSKFGDKVGGTEMADNANANEAASVAEAQAGKEVNLEEATAVESASADANT 406 (407)
Q Consensus 343 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (407)
..||.....+..|+.+|..++ ++++|+.+.+++...-....|.+||.+....+|+
T Consensus 365 ~~Hp~~a~~l~nLa~~~~~~g---------~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l 419 (429)
T 3qwp_A 365 GSHPVRGVQVMKVGKLQLHQG---------MFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLL 419 (429)
T ss_dssp SSCHHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 358888999999999999999 9999999999999999999999999988766553
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.70 E-value=0.00016 Score=50.07 Aligned_cols=58 Identities=14% Similarity=0.228 Sum_probs=34.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 235 LVGKLVQVGMLDEAKSFFDIMVKKLKMDDA-SYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 235 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
.+..+...|++++|...|+++.+..|.+.. .+..++.+|...|++++|+..|++++..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344455566666666666666655555555 6666666666666666666666666654
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.68 E-value=0.00016 Score=65.13 Aligned_cols=64 Identities=9% Similarity=0.012 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 84 AVANNSVLDALCNNGKFDEALKLFDRMKNE-----HNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKM 150 (407)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 150 (407)
..+++.|+.+|...|++++|+.+++++++. |+.... ...+++.|...|..+|++++|+.+|++.
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~---~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLN---VASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChH---HHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 344444444555555555555444444321 211111 3444555555555555555555544444
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.62 E-value=0.00019 Score=49.70 Aligned_cols=57 Identities=18% Similarity=0.187 Sum_probs=26.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCchh-hHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 015416 55 KGYFMKGMEEEAMECYNEAVGENSSVKMSAV-ANNSVLDALCNNGKFDEALKLFDRMKNEH 114 (407)
Q Consensus 55 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 114 (407)
..+...|++++|+..|+++++.+ +.+.. .+..+..+|...|++++|...|+++++..
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE---PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC---SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34444445555555555444443 22333 44444444444555555555555444443
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.60 E-value=0.002 Score=55.73 Aligned_cols=49 Identities=10% Similarity=-0.074 Sum_probs=32.0
Q ss_pred CCchhhHHHHHHHHH--hcC---CHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHH
Q 015416 81 KMSAVANNSVLDALC--NNG---KFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYC 135 (407)
Q Consensus 81 ~~~~~~~~~l~~~~~--~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 135 (407)
+.+..+|...+++.. ..+ +..+|..+|+++++..|. ....+..+..+|.
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~------~a~A~A~la~a~~ 244 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE------FTYARAEKALVDI 244 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHH
Confidence 556677777775543 333 358899999999998765 4445555555544
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.57 E-value=0.00031 Score=63.30 Aligned_cols=91 Identities=18% Similarity=0.067 Sum_probs=39.2
Q ss_pred cCCHHHHHHHHHHHHhC-----CCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCccccccchHHHHHH
Q 015416 60 KGMEEEAMECYNEAVGE-----NSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEH--NPPKRLAVNLGSFNVMAD 132 (407)
Q Consensus 60 ~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~ 132 (407)
.|++++|+.+++++++. +++.+....+++.++.+|...|++++|+.+++++++.. .-+........+++.|..
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~ 379 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGK 379 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHH
Confidence 34445555555444421 22223333444555555555555555555554443210 000111113445555555
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 015416 133 GYCGQGRFKDAIEVFRKM 150 (407)
Q Consensus 133 ~~~~~g~~~~A~~~~~~~ 150 (407)
.|...|++++|+.++++.
T Consensus 380 ~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 380 LQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHH
Confidence 555555555555555444
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.49 E-value=0.0023 Score=43.68 Aligned_cols=70 Identities=11% Similarity=0.047 Sum_probs=49.7
Q ss_pred CcCHHHHHHHHHHHHhcCC---hhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 015416 7 VADPVVYSYLMLGFVRDGD---SDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSS 79 (407)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 79 (407)
+.|+..+..+..++...++ .++|..+|++..+. .|.++.....++..+.+.|++++|+..|++++..+|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~---dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL---EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566666677776655444 67788888888775 3446677777778888888888888888888877644
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.47 E-value=0.0034 Score=42.82 Aligned_cols=68 Identities=10% Similarity=0.071 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 015416 226 RPNLAVYNRLVGKLVQVGM---LDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDG 293 (407)
Q Consensus 226 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 293 (407)
+.+...+..++.++...++ .++|..++++.+...|.++.+...++..+...|++++|+..|+++++..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4566677777777754444 6788888888888777788888888888888888888888888887763
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.22 E-value=0.0063 Score=45.31 Aligned_cols=80 Identities=11% Similarity=0.076 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 015416 212 DGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG---MLDEAKSFFDIMVKKLKM--DDASYKFMMKALSDGGKLDEILEIV 286 (407)
Q Consensus 212 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~ 286 (407)
.+.+.|.+..+.+ .++..+...+..++++.+ +.++++.+|+.+.+...| +...+..+..+|.+.|++++|.+++
T Consensus 16 ~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 16 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3444444444443 245555555666666655 344566666655553322 3445555555666666666666666
Q ss_pred HHHHhc
Q 015416 287 GGILDD 292 (407)
Q Consensus 287 ~~~~~~ 292 (407)
+.+++.
T Consensus 95 ~~lL~i 100 (152)
T 1pc2_A 95 RGLLQT 100 (152)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666553
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.22 E-value=0.07 Score=44.38 Aligned_cols=81 Identities=20% Similarity=0.179 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhc-CCH
Q 015416 210 VDDGATYFRKMVDSGLRPN---LAVYNRLVGKLVQ-----VGMLDEAKSFFDIMVKKLKM-DDASYKFMMKALSDG-GKL 279 (407)
Q Consensus 210 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-g~~ 279 (407)
...|...++++++ +.|+ -..|..|+..|.. .|+.++|.++|++.+...|- +..++......++.. |+.
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 4567778888887 4676 4488888888888 48999999999999985554 488888888888884 899
Q ss_pred HHHHHHHHHHHhc
Q 015416 280 DEILEIVGGILDD 292 (407)
Q Consensus 280 ~~A~~~~~~~~~~ 292 (407)
+++.+++++++..
T Consensus 257 ~~a~~~L~kAL~a 269 (301)
T 3u64_A 257 AGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcC
Confidence 9999999999885
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.13 E-value=0.0091 Score=44.45 Aligned_cols=85 Identities=8% Similarity=0.021 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCC--cHHHHHHHHHHHhhcCcHHHHH
Q 015416 245 LDEAKSFFDIMVKKLKMDDASYKFMMKALSDGG---KLDEILEIVGGILDDGGIEF--SEELQEFVKGELSKEGREEEVV 319 (407)
Q Consensus 245 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 319 (407)
...+.+.|.......+++..+...+..++++++ ++++++.+|+.+.+.. .| ..+.+..++-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHHHHH
Confidence 445666676666666789999999999999988 6779999999999863 24 4667778888999999999999
Q ss_pred HHHHHHHHhhHH
Q 015416 320 KLMEKKEREKAE 331 (407)
Q Consensus 320 ~~~~~~~~~~~~ 331 (407)
+.++.+.+..+.
T Consensus 92 ~y~~~lL~ieP~ 103 (152)
T 1pc2_A 92 KYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHhcCCC
Confidence 999999876653
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.04 E-value=0.053 Score=53.22 Aligned_cols=191 Identities=15% Similarity=0.142 Sum_probs=111.1
Q ss_pred HHHHHcCCHHHHHH-HHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHH
Q 015416 55 KGYFMKGMEEEAME-CYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADG 133 (407)
Q Consensus 55 ~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 133 (407)
......++++.|.+ ++.. ++ +......++..+.+.|.++.|.++.+.- ..-...
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-------i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~-----------------~~~f~~ 661 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-------VE-GKDSLTKIARFLEGQEYYEEALNISPDQ-----------------DQKFEL 661 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-------CC-CHHHHHHHHHHHHHTTCHHHHHHHCCCH-----------------HHHHHH
T ss_pred hHHHHhCCHHHHHHHHHhc-------CC-chHHHHHHHHHHHhCCChHHheecCCCc-----------------chheeh
Confidence 34455678887766 4311 11 0122366777778888888887655211 111334
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 015416 134 YCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDG 213 (407)
Q Consensus 134 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 213 (407)
....|+++.|.++.+.+ .+...|..+...+.+.++++.|++.|.++.. |..+...|...|+.+..
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~ 726 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGL 726 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHH
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHH
Confidence 56678888888875433 4677888888888888888888888887753 33455555556666655
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 015416 214 ATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDG 293 (407)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 293 (407)
.++.+.....| -++....+|.+.|++++|.+++ .+.+++++|..+-+..
T Consensus 727 ~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~---------------------~~~~~~~~A~~lA~~~---- 775 (814)
T 3mkq_A 727 VTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLL---------------------IKSQRFSEAAFLGSTY---- 775 (814)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH---------------------HHTTCHHHHHHHHHHT----
T ss_pred HHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHH---------------------HHcCChHHHHHHHHHh----
Confidence 55444444432 1222333344455555555444 4456677777765542
Q ss_pred CCCCcH----HHHHHHHHHHhhcCcHHHH
Q 015416 294 GIEFSE----ELQEFVKGELSKEGREEEV 318 (407)
Q Consensus 294 ~~~~~~----~~~~~l~~~~~~~g~~~~A 318 (407)
.|.. .........+...|+.+.|
T Consensus 776 --~~~~~~i~~~~~~~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 776 --GLGDNEVNDIVTKWKENLILNGKNTVS 802 (814)
T ss_dssp --TCCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred --CCChHHHHHHHHHHHHHHHhccchhHH
Confidence 2233 4455555556666665444
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.02 E-value=0.023 Score=43.44 Aligned_cols=129 Identities=16% Similarity=0.145 Sum_probs=82.7
Q ss_pred HHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhc
Q 015416 18 LGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNN 97 (407)
Q Consensus 18 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 97 (407)
......|+++.|.++.+.+ .+...|..|+......|+++-|...|.+... +..+.-.|.-.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----------~~~L~~Ly~~t 73 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----------FDKLSFLYLVT 73 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----------HHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----------HHHHHHHHHHh
Confidence 3445678888888876654 1566888888888888888888888877542 34455556677
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 015416 98 GKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAE 177 (407)
Q Consensus 98 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 177 (407)
|+.+.-.++-+.....| -++....++...|+++++.++|.+.... |. -.......|..+.
T Consensus 74 g~~e~L~kla~iA~~~g-----------~~n~af~~~l~lGdv~~~i~lL~~~~r~---~e------A~~~A~t~g~~~~ 133 (177)
T 3mkq_B 74 GDVNKLSKMQNIAQTRE-----------DFGSMLLNTFYNNSTKERSSIFAEGGSL---PL------AYAVAKANGDEAA 133 (177)
T ss_dssp TCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHTCHHHHHHHHHHTTCH---HH------HHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHHCc-----------cHHHHHHHHHHcCCHHHHHHHHHHCCCh---HH------HHHHHHHcCcHHH
Confidence 77776666655555443 3566666777788888888887654331 11 1111223456666
Q ss_pred HHHHHHHH
Q 015416 178 AEELYGEM 185 (407)
Q Consensus 178 a~~~~~~~ 185 (407)
|.++.+++
T Consensus 134 a~~~~~~~ 141 (177)
T 3mkq_B 134 ASAFLEQA 141 (177)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 66666654
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.99 E-value=0.012 Score=41.00 Aligned_cols=60 Identities=12% Similarity=0.127 Sum_probs=26.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 232 YNRLVGKLVQVGMLDEAKSFFDIMVKK-------LKMDDASYKFMMKALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 232 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 291 (407)
+..|+..+...|++..|..+|+.+... ..+...++..+..++.+.|+++.|+.+++++..
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 334444444444444444444444431 012233444444444444444444444444444
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.95 E-value=0.0065 Score=42.40 Aligned_cols=69 Identities=12% Similarity=-0.014 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCC----ccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGG----VVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGEN 77 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 77 (407)
+..-+-.|...+.+.|++..|...|+...+..+. ..+...++..|+.++.+.|+++.|+.++++++...
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 4444556666677777777777777776654211 11234556666667777777777777777666654
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.91 E-value=0.033 Score=54.69 Aligned_cols=157 Identities=13% Similarity=0.084 Sum_probs=87.7
Q ss_pred HHHHHhcCCHHHHHH-HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 015416 131 ADGYCGQGRFKDAIE-VFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNR 209 (407)
Q Consensus 131 ~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 209 (407)
.......+++++|.+ ++..+ ++......++..+.+.|.++.|+++.+ +.. .-.......|+
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~ 667 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQ 667 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTC
T ss_pred HhHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCC
Confidence 334455677777766 44221 112233666677777788887776552 111 11233456788
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 210 VDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGI 289 (407)
Q Consensus 210 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 289 (407)
++.|.++.+.+ .+...|..++..+.+.|+++.|.+.|.++.. |..+...|...|+.+...++.+.+
T Consensus 668 ~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d--------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 668 LTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD--------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC--------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC--------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 88888775432 3567888888888888888888888887754 333444444455555555444444
Q ss_pred HhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015416 290 LDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 290 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 326 (407)
.... . +..-..+|.+.|++++|++++.++.
T Consensus 734 ~~~~----~---~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 734 ETTG----K---FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHTT----C---HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHcC----c---hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 3321 0 1112223444555555555554443
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.15 Score=38.97 Aligned_cols=102 Identities=16% Similarity=0.179 Sum_probs=58.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 015416 132 DGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVD 211 (407)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 211 (407)
......|+++.|.++.+.+ .+...|..|.......|+++-|+..|.+... +..+.-.|...|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3455566666666665554 2556667777777777777777666666543 334445555566665
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015416 212 DGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDI 254 (407)
Q Consensus 212 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 254 (407)
+-.++-+.....| -++.....+...|+++++.++|.+
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555444444433 133444445556666666666644
No 228
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.58 E-value=0.42 Score=46.85 Aligned_cols=266 Identities=10% Similarity=0.005 Sum_probs=149.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc--cccc--chHHHHH
Q 015416 56 GYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRL--AVNL--GSFNVMA 131 (407)
Q Consensus 56 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~--~~~~~l~ 131 (407)
+....|+.++++.+++..+..+..-.+....-..+.-+....|..+++..++...+........- .+.. .+...|.
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 34566888888888776654210012222333344445666676667888777766532100000 0011 1223344
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHH--H--HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 015416 132 DGYCGQGRFKDAIEVFRKMGEYRCSPDTLS--F--NNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEV 207 (407)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 207 (407)
-+|.-.++ +++.+.+..++... +... . -.|+..+.-.|+.+....++..+.+.. .-+..-+..+.-++...
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCC-HHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhC
Confidence 44444444 45566666665532 2221 1 233444556788777788888777632 11222233344455578
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015416 208 NRVDDGATYFRKMVDSGLRPNLA--VYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEI 285 (407)
Q Consensus 208 g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 285 (407)
|+.+.+..+.+.+.... .|... ....++.+|+..|+.....+++..+.+....+..-...+.-++...|+.+.+.++
T Consensus 538 g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 538 GRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp TCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 99999999988888631 22222 2234566788899988888899888874333444444444455556777777777
Q ss_pred HHHHHhcCCCCCcHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHhh
Q 015416 286 VGGILDDGGIEFSEELQEFVKGELSKEGRE-EEVVKLMEKKEREK 329 (407)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~ 329 (407)
+..+.... .|....-..++-+....|.. .+++..+..+....
T Consensus 617 v~~L~~~~--d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~ 659 (963)
T 4ady_A 617 VQLLSKSH--NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDP 659 (963)
T ss_dssp TTTGGGCS--CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCS
T ss_pred HHHHHhcC--CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCC
Confidence 77666542 45555555555555555554 57888888887433
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.58 E-value=0.1 Score=38.40 Aligned_cols=113 Identities=14% Similarity=0.200 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhCCCCCCHH----HHHHHHH---HHHhcCChHHHHHHHHHHHHC
Q 015416 157 PDTLSFNNLIDQLCKNGML------AEAEELYGEMSDKGVNPDEY----TYGLLMD---ACFEVNRVDDGATYFRKMVDS 223 (407)
Q Consensus 157 ~~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~p~~~----~~~~l~~---~~~~~g~~~~a~~~~~~~~~~ 223 (407)
.|..+|-..+...-+.|++ ++..++|+++... ++|+.. .|.-+.- .+...++.++|.++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4555555555555555666 5666666666553 444321 0111100 112335666677777666543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 015416 224 GLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMK 271 (407)
Q Consensus 224 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 271 (407)
+-. =..+|....+.-.++|+...|.+++.+.+...+.+...+...++
T Consensus 90 hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 90 CKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp CTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred hHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 212 14556666666666777777777777666644444444444433
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.57 E-value=0.038 Score=39.54 Aligned_cols=82 Identities=12% Similarity=0.084 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 015416 210 VDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDE---AKSFFDIMVKKLKM--DDASYKFMMKALSDGGKLDEILE 284 (407)
Q Consensus 210 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 284 (407)
+..+.+.|......| .++..+-..+..++.+..+... ++.+++.+.....| .......+..++.+.|++++|.+
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 334444444444333 2455555555555555554444 55555555543222 23344555555556666666666
Q ss_pred HHHHHHhc
Q 015416 285 IVGGILDD 292 (407)
Q Consensus 285 ~~~~~~~~ 292 (407)
+++.+++.
T Consensus 96 ~~~~lL~~ 103 (126)
T 1nzn_A 96 YVRGLLQT 103 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66655554
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.55 E-value=0.018 Score=47.84 Aligned_cols=95 Identities=13% Similarity=0.075 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhc
Q 015416 63 EEEAMECYNEAVGENSSVKMSAVANNSVLDALCNN-----GKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQ 137 (407)
Q Consensus 63 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 137 (407)
...|...++++++.+|. -.+...|..++..|.+. |+.++|.+.|++.++..+.. +..++......++..
T Consensus 179 l~~A~a~lerAleLDP~-~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~-----~id~~v~YA~~l~~~ 252 (301)
T 3u64_A 179 VHAAVMMLERACDLWPS-YQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH-----DPDHHITYADALCIP 252 (301)
T ss_dssp HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT-----CSHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhCCC-cccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC-----CchHHHHHHHHHHHh
Confidence 46788888888887632 12456788888888884 88999999999888887642 466777788888774
Q ss_pred -CCHHHHHHHHHHHhhCCCC--CCHHHHH
Q 015416 138 -GRFKDAIEVFRKMGEYRCS--PDTLSFN 163 (407)
Q Consensus 138 -g~~~~A~~~~~~~~~~~~~--~~~~~~~ 163 (407)
|+.+.+.+.+++.+..... |+....+
T Consensus 253 ~gd~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 253 LNNRAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp TTCHHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred cCCHHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 8888888888888886544 4444433
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.49 E-value=0.05 Score=38.92 Aligned_cols=87 Identities=10% Similarity=-0.000 Sum_probs=68.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCCCC--cHHHHHHHHHHHhhcCcHH
Q 015416 242 VGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDE---ILEIVGGILDDGGIEF--SEELQEFVKGELSKEGREE 316 (407)
Q Consensus 242 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 316 (407)
......+.+-|.......+++..+-..+..+++++..... ++.+++.+.... .| .......++-++.+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHhhhHH
Confidence 3344556666666655556899999999999999887766 999999988863 23 4556777888999999999
Q ss_pred HHHHHHHHHHHhhH
Q 015416 317 EVVKLMEKKEREKA 330 (407)
Q Consensus 317 ~A~~~~~~~~~~~~ 330 (407)
+|.+.++.+.+..+
T Consensus 92 ~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 92 KALKYVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999987654
No 233
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.37 E-value=0.17 Score=36.49 Aligned_cols=142 Identities=16% Similarity=0.148 Sum_probs=95.7
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015416 170 CKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAK 249 (407)
Q Consensus 170 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 249 (407)
.-.|..++..++..+.... .+..-|+.++--....-+-+-..++++..-+. + |. ..+|+.....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-F--Di----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--DL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--CG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh-c--Cc----------HhhhcHHHHH
Confidence 3457777777777777653 24555666666655555555555555554331 1 11 2344554444
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 250 SFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
..+-.+- .+...+...+..+...|+-++-.+++..++.. .+|+++....++.+|.+.|+..+|.+++.+.-+.|
T Consensus 82 ~C~~~~n----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n--~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVINN----TLNEHVNKALDILVIQGKRDKLEEIGREILKN--NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTT----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc--CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 4444332 25566677788888999999999999986553 48889999999999999999999999999998888
Q ss_pred HHHH
Q 015416 330 AEAK 333 (407)
Q Consensus 330 ~~~~ 333 (407)
.+..
T Consensus 156 ~kEA 159 (172)
T 1wy6_A 156 EKEA 159 (172)
T ss_dssp CHHH
T ss_pred hHHH
Confidence 6644
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.31 E-value=0.057 Score=39.72 Aligned_cols=104 Identities=13% Similarity=0.159 Sum_probs=76.1
Q ss_pred cCHHHHHHHHHHHHhcCCh------hhHHHHHHHHHHhhCCccCCcc-hHHHHHHH------HHHcCCHHHHHHHHHHHH
Q 015416 8 ADPVVYSYLMLGFVRDGDS------DGVFRLFEELKEKLGGVVSDGV-VYGSLMKG------YFMKGMEEEAMECYNEAV 74 (407)
Q Consensus 8 p~~~~~~~li~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~g~~~~A~~~~~~~~ 74 (407)
-|..+|-..+...-+.|+. ++..++|++.... +||+.. .|...+.. +...+++++|.++|+.++
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~---~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA---LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH---SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc---CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4677888888888888998 8888999988884 666542 12222211 123478899999999987
Q ss_pred hCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 015416 75 GENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPP 117 (407)
Q Consensus 75 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 117 (407)
+....+ ...|......-.+.|+...|.+++.+.+..++.|
T Consensus 88 ~~hKkF---AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 88 ANCKKF---AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHCTTB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHhHHH---HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 664333 7777777777788999999999999998877665
No 235
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.16 E-value=0.57 Score=42.25 Aligned_cols=53 Identities=13% Similarity=0.138 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHh---CCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 61 GMEEEAMECYNEAVG---ENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNE 113 (407)
Q Consensus 61 g~~~~A~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 113 (407)
|+++.|++.+-.+.+ .+.+...+......++..|...++++...+.+.-+.+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk 85 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK 85 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 555666555544433 23333334444555566666666666655555555443
No 236
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.92 E-value=0.073 Score=39.98 Aligned_cols=119 Identities=5% Similarity=-0.024 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCCHHH
Q 015416 197 YGLLMDACFEVNRVDDGATYFRKMVDS-GLRPN-------LAVYNRLVGKLVQVGMLDEAKSFFDIMVK---KLKMDDAS 265 (407)
Q Consensus 197 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 265 (407)
+..-+..+...+.++.|+-+...+... +..|+ ..++..++.++...|++..|...|++.+. ..+-...+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 444455666777777777776665421 11222 12556667777777777777777777655 11111111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 266 YKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 266 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
...+. ....... ......+.+....++.||.+.|++++|+.+++.++.+.
T Consensus 103 ~~~~~----~~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 103 RPSTG----NSASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred ccccc----ccCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 11000 0000000 00123455666668888889999999999888876544
No 237
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.85 E-value=0.86 Score=40.05 Aligned_cols=133 Identities=11% Similarity=-0.029 Sum_probs=61.4
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--CchhhHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCcccccc
Q 015416 48 VVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVK--MSAVANNSVLDALCNN-GKFDEALKLFDRMKNEHNPPKRLAVNL 124 (407)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~ 124 (407)
.+...|+..|.+.|+.++..+++.....--+.++ ........++..+... +..+.-.++..+..+.... ..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~------~~ 93 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ------EK 93 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH------TT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH------HH
Confidence 4556677777777777777777766543211110 0111233444444443 3344444444444443221 11
Q ss_pred chH------HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015416 125 GSF------NVMADGYCGQGRFKDAIEVFRKMGEYRCSPD-----TLSFNNLIDQLCKNGMLAEAEELYGEMS 186 (407)
Q Consensus 125 ~~~------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 186 (407)
.+| .-|+..|...|++.+|.+++.++.+.--..| ...+-.-+..|...+++.++...+....
T Consensus 94 r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 94 RTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 122 1345555555555555555555443210001 1133344445555555555555555543
No 238
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.75 E-value=2.6e-05 Score=68.96 Aligned_cols=215 Identities=16% Similarity=0.203 Sum_probs=142.1
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccc
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLG 125 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 125 (407)
.+.+|+.|+.+....+.+.+|++.|-++ + |...|..++.+..+.|.+++-++.+...++... ++.
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA---~-----Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k-------e~~ 117 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA---D-----DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR-------ESY 117 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC---S-----CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC-------STT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC---C-----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-------ccc
Confidence 5678888898888888888887766332 1 445677888888888998888888876665432 334
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----------------
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKG---------------- 189 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------------- 189 (407)
+=+.|+-+|++.++..+..++ +. .|+..-...++.-|...|.++.|.-+|..+....
T Consensus 118 IDteLi~ayAk~~rL~elEef----l~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AV 190 (624)
T 3lvg_A 118 VETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAV 190 (624)
T ss_dssp TTHHHHHHHHTSCSSSTTTST----TS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSST
T ss_pred cHHHHHHHHHhhCcHHHHHHH----Hc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 556788888888886654332 22 2666666677778888888777776665543210
Q ss_pred ----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 015416 190 ----VNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDAS 265 (407)
Q Consensus 190 ----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 265 (407)
-.-++.||..+-.+|...+++.-|.-+--.++-. ++ -...++..|...|.+++-+.+++.....-.....+
T Consensus 191 daArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGm 265 (624)
T 3lvg_A 191 DGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGM 265 (624)
T ss_dssp TTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHH
T ss_pred HHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHH
Confidence 1235668888888888888777665554444421 11 12235666777777887777777777655567777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 015416 266 YKFMMKALSDGGKLDEILEIVGG 288 (407)
Q Consensus 266 ~~~l~~~~~~~g~~~~A~~~~~~ 288 (407)
|.-|+..|++- +.++..+.++.
T Consensus 266 FTELaILYsKY-~PeKlmEHlkl 287 (624)
T 3lvg_A 266 FTELAILYSKF-KPQKMREHLEL 287 (624)
T ss_dssp HHHHHHHHHSS-CTTHHHHHHTT
T ss_pred HHHHHHHHHhc-CHHHHHHHHHH
Confidence 77777777765 34444544443
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.73 E-value=1 Score=40.62 Aligned_cols=265 Identities=9% Similarity=0.087 Sum_probs=145.6
Q ss_pred cCChhhHHHHHHHHHHhhC---CccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHH----H
Q 015416 23 DGDSDGVFRLFEELKEKLG---GVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDAL----C 95 (407)
Q Consensus 23 ~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~ 95 (407)
.|+++.|++.+-.+.+... ...-.......++..|...|+++...+.+.-+..... ..+ .....+++.+ .
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~-qlk--~ai~~~V~~~~~~l~ 105 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHG-QLK--LSIQYMIQKVMEYLK 105 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTT-TSH--HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhh-hhH--HHHHHHHHHHHHHHh
Confidence 3788999998888876521 1222344577789999999999999888877665432 222 2223333322 2
Q ss_pred hcCCHHHHHHHHHHHHhc--CCCCCcccc---ccchHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCC---HHHHHHH
Q 015416 96 NNGKFDEALKLFDRMKNE--HNPPKRLAV---NLGSFNVMADGYCGQGRFKDAIEVFRKMGEY--RCSPD---TLSFNNL 165 (407)
Q Consensus 96 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~~~~~l 165 (407)
.....+....+ ..... ......... .......|...|...|++.+|.+++..+... |.... ...+...
T Consensus 106 ~~~~~d~~~~~--~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q 183 (445)
T 4b4t_P 106 SSKSLDLNTRI--SVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQ 183 (445)
T ss_dssp HHCTTHHHHHH--HHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHH
T ss_pred cCCchhHHHHH--HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 23333322221 11111 112111111 1122356788888899999999988887542 21111 2356667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHH----H
Q 015416 166 IDQLCKNGMLAEAEELYGEMSD----KGVNPD--EYTYGLLMDACFEVNRVDDGATYFRKMVDS-GLRPNLAVYN----R 234 (407)
Q Consensus 166 ~~~~~~~g~~~~a~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~----~ 234 (407)
++.|...+++.+|..++.++.. ....|+ ...+...+..+...+++.+|-+.|.++.+. ....+...+. .
T Consensus 184 ~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~ 263 (445)
T 4b4t_P 184 MELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSH 263 (445)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHH
Confidence 7888888999998888887642 222222 234566677777788888888877776641 0111222222 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhc
Q 015416 235 LVGKLVQVGMLDEAKSFFDIMVK-KLKMDDASYKFMMKALSDG--GKLDEILEIVGGILDD 292 (407)
Q Consensus 235 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~ 292 (407)
++.+..-.+....-..++..... ..-++...+..++.+|... .+++...+.|...+..
T Consensus 264 ~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~ 324 (445)
T 4b4t_P 264 IVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNE 324 (445)
T ss_dssp HHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTT
T ss_pred HHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcc
Confidence 22222233333333344443333 1223455666677777663 4566666666554443
No 240
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.46 E-value=2.2 Score=41.98 Aligned_cols=21 Identities=10% Similarity=-0.007 Sum_probs=9.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 015416 167 DQLCKNGMLAEAEELYGEMSD 187 (407)
Q Consensus 167 ~~~~~~g~~~~a~~~~~~~~~ 187 (407)
.+|+..|+......++..+..
T Consensus 568 lAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 568 LAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HHTTTSCCHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHhcc
Confidence 344445554444445555443
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.07 E-value=0.21 Score=44.24 Aligned_cols=81 Identities=9% Similarity=0.074 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCcHHHHHHHH
Q 015416 231 VYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDD----GGIEFSEELQEFVK 306 (407)
Q Consensus 231 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~l~ 306 (407)
+...++..+...|+++++...+..+....|.+...+..++.++.+.|+..+|++.|++.... .|+.|...+....-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 44567788889999999999999999988899999999999999999999999999987653 48899998877665
Q ss_pred HHHhh
Q 015416 307 GELSK 311 (407)
Q Consensus 307 ~~~~~ 311 (407)
..+..
T Consensus 253 ~il~~ 257 (388)
T 2ff4_A 253 RILRQ 257 (388)
T ss_dssp HHHTT
T ss_pred HHHcC
Confidence 55543
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.92 E-value=0.16 Score=48.66 Aligned_cols=124 Identities=13% Similarity=0.057 Sum_probs=71.8
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCC-HHHHHHHHHHHHh-------cCCC-CH---
Q 015416 199 LLMDACFEVNR-VDDGATYFRKMVDSGLRPNLAVY--NRLVGKLVQVGM-LDEAKSFFDIMVK-------KLKM-DD--- 263 (407)
Q Consensus 199 ~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~-~~~A~~~~~~~~~-------~~~~-~~--- 263 (407)
.++..+...++ .+.|..+++++.+. .|...++ ..++..+...++ --+|.+++.+.++ ..++ +.
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 34444444555 46677888887764 2332222 222322223322 2245555544442 1111 11
Q ss_pred -------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015416 264 -------ASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKE 326 (407)
Q Consensus 264 -------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 326 (407)
.....=..-|...|+++-|+++.+++... .|.+..+|..|+.+|...|+++.|+-.+..++
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11222234456678888888888888775 36667788888888888888888888888876
No 243
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.81 E-value=0.27 Score=36.94 Aligned_cols=133 Identities=9% Similarity=0.083 Sum_probs=81.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHH
Q 015416 162 FNNLIDQLCKNGMLAEAEELYGEMSDK-GVNPD-------EYTYGLLMDACFEVNRVDDGATYFRKMVDS--GLRPNLAV 231 (407)
Q Consensus 162 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~ 231 (407)
+..-+..+...|.++.|+-+...+... +..|+ ..++..+.+++...+++..|...|++.++. .+.-+..+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 444567788899999999988886542 12344 236677889999999999999999998642 11111111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 015416 232 YNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGEL 309 (407)
Q Consensus 232 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (407)
...+. ........ .....+...-..+..+|.+.|++++|+.+++.+-.+ .-++.+-..|++.|
T Consensus 103 ~~~~~----~~ss~p~s--------~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k---~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 103 RPSTG----NSASTPQS--------QCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR---QRTPKINMLLANLY 165 (167)
T ss_dssp --------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG---GCCHHHHHHHHHHC
T ss_pred ccccc----ccCCCccc--------ccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch---hcCHHHHHHHHHHh
Confidence 11110 00000000 012345566777889999999999999998876443 34455555555554
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.70 E-value=1.5 Score=38.75 Aligned_cols=68 Identities=15% Similarity=0.159 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHH
Q 015416 128 NVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSD-----KGVNPDEYT 196 (407)
Q Consensus 128 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~ 196 (407)
..++..+...|++.+++..+..+.... |-+...|..++.++.+.|+..+|+..|+.+.+ .|+.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 334455555666666665555555443 34555566666666666666666665555432 355555443
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.61 E-value=0.22 Score=47.74 Aligned_cols=52 Identities=10% Similarity=0.022 Sum_probs=36.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015416 238 KLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGI 289 (407)
Q Consensus 238 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 289 (407)
.+...|+++-|+.+-++...-.|.+..+|..|..+|...|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3455677777777777777666666777777777777777777777666654
No 246
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.50 E-value=0.00014 Score=64.38 Aligned_cols=244 Identities=11% Similarity=0.171 Sum_probs=157.1
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHH
Q 015416 9 DPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANN 88 (407)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 88 (407)
.+..|..|..++.+.+...+|++.| ++. .|+..|..++.+..+.|++++-+.++.-+.+.. .+..+=+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~----ke~~IDt 120 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA----RESYVET 120 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC----CSTTTTH
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh----cccccHH
Confidence 3456777888888888888888776 222 277788889999999999998888887665543 2334445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhC---------------
Q 015416 89 SVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY--------------- 153 (407)
Q Consensus 89 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------- 153 (407)
.|+-+|++.++..+-.+++. .| +..-...+++-|...|.++.|.-+|..+...
T Consensus 121 eLi~ayAk~~rL~elEefl~-------~~-----N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 121 ELIFALAKTNRLAELEEFIN-------GP-----NNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHHHHHTSCSSSTTTSTTS-------CC-----SSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGS
T ss_pred HHHHHHHhhCcHHHHHHHHc-------CC-----CcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 78888888888654333221 11 4444556667777777777766666554221
Q ss_pred -----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 015416 154 -----RCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPN 228 (407)
Q Consensus 154 -----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 228 (407)
.-..++.||..+..+|...+.+.-|...--.++- .|| ....++..|-..|.+++-+.+++..+... +..
T Consensus 189 AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAH 262 (624)
T 3lvg_A 189 AVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAH 262 (624)
T ss_dssp STTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCC
T ss_pred HHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chh
Confidence 1124677899999999999888777655444442 222 12345666778888888888888877432 457
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCC------CHHHHHHHHHHHHhcCCHHHHH
Q 015416 229 LAVYNRLVGKLVQVGMLDEAKSFFDIMVKK--LKM------DDASYKFMMKALSDGGKLDEIL 283 (407)
Q Consensus 229 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~------~~~~~~~l~~~~~~~g~~~~A~ 283 (407)
..+|+-|+-.|++- ++++.++.++...+. .|. ....|.-++-.|.+-.+++.|.
T Consensus 263 mGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 263 MGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 77888888888775 555555555544431 111 2234556666666666666554
No 247
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.48 E-value=3.3 Score=38.99 Aligned_cols=116 Identities=10% Similarity=0.121 Sum_probs=74.2
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015416 208 NRVDDGATYFRKMVDSGLRPNLAVY----NRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEIL 283 (407)
Q Consensus 208 g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 283 (407)
.+.+.|...+....+.. ..+.... ..++..+...+...++...+..... ...+.....-.++...+.|+++.|.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM-RSQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc-cCCChHHHHHHHHHHHHCCCHHHHH
Confidence 47788888888876432 2333322 2233333344535566666666544 3344444555555566779999999
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 015416 284 EIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKER 327 (407)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 327 (407)
..|..+-... .........+++++...|+.++|..+|+++..
T Consensus 306 ~~~~~l~~~~--~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEA--KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTG--GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccc--cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9998886531 23455556677888889999999999988865
No 248
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.46 E-value=0.6 Score=38.25 Aligned_cols=70 Identities=14% Similarity=0.100 Sum_probs=41.4
Q ss_pred HHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHH
Q 015416 19 GFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVL 91 (407)
Q Consensus 19 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (407)
...+.|+++.|++....-++. .|-|...-..|+..++-.|++++|.+-++.+.+.+|...|....|..+|
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~---~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI 75 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV 75 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH
Confidence 345566666666666666663 3446666666666666667777776666666665544444444444444
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.25 E-value=1.3 Score=45.31 Aligned_cols=195 Identities=11% Similarity=0.058 Sum_probs=124.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC----------------
Q 015416 128 NVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVN---------------- 191 (407)
Q Consensus 128 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---------------- 191 (407)
..++..+...+.++.+.++..-. +.+....-.++.+|...|++++|..+|++.-. |+.
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccc
Confidence 34556667777777766644332 23555556778899999999999999987532 110
Q ss_pred -------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 015416 192 -------PDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNL----AVYNRLVGKLVQVGMLDEAKSFFDIMVKKLK 260 (407)
Q Consensus 192 -------p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 260 (407)
.-..-|..++..+.+.+.++.+.++-..+++.....+. ..|..+.+.+...|++++|...+-.+.. ..
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd-~~ 968 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST-TP 968 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH-SS
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC-HH
Confidence 01234677888888999999999988888764322222 2688899999999999999999987765 22
Q ss_pred CCHHHHHHHHHHHHhcCCHHHH------------HHHHHH-HHhcCCCCCcHHHHHHHHHHHhhcCcHHHHH-HHHHHHH
Q 015416 261 MDDASYKFMMKALSDGGKLDEI------------LEIVGG-ILDDGGIEFSEELQEFVKGELSKEGREEEVV-KLMEKKE 326 (407)
Q Consensus 261 ~~~~~~~~l~~~~~~~g~~~~A------------~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~ 326 (407)
--...+..++..++..|..+.- .+++.. +.........+..|..|-.-+...|++..|- .+|+.+.
T Consensus 969 ~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 3456677777777766655443 333322 1111011223345666666666667766554 4555555
Q ss_pred Hhh
Q 015416 327 REK 329 (407)
Q Consensus 327 ~~~ 329 (407)
+.+
T Consensus 1049 RL~ 1051 (1139)
T 4fhn_B 1049 RYI 1051 (1139)
T ss_dssp HHH
T ss_pred Hhh
Confidence 443
No 250
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.93 E-value=1.2 Score=32.09 Aligned_cols=140 Identities=15% Similarity=0.128 Sum_probs=85.9
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhc
Q 015416 58 FMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQ 137 (407)
Q Consensus 58 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 137 (407)
.-.|..++..++..+..... +..-+|-++--....-+-+-..++++.+-+.- |. ..+
T Consensus 18 ildG~v~qGveii~k~~~ss-----ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF--------Di----------s~C 74 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS-----TKSEYNWFICNLLESIDCRYMFQVLDKIGSYF--------DL----------DKC 74 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS--------CG----------GGC
T ss_pred HHhhhHHHHHHHHHHHcCCC-----CccccceeeeecchhhchhHHHHHHHHHhhhc--------Cc----------Hhh
Confidence 34577888888887777644 33444444444444455555555555543321 11 223
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 015416 138 GRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYF 217 (407)
Q Consensus 138 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 217 (407)
|++......+-.+- .+....+..+..+...|+-++-.+++..+... .+|++.....+..+|.+.|+..++.+++
T Consensus 75 ~NlKrVi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 75 QNLKSVVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp SCTHHHHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcHHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 44444444443332 24455566677777788888888888876542 4677777778888888888888888888
Q ss_pred HHHHHCCCC
Q 015416 218 RKMVDSGLR 226 (407)
Q Consensus 218 ~~~~~~~~~ 226 (407)
.++.+.|++
T Consensus 149 ~~AC~kG~k 157 (172)
T 1wy6_A 149 IEACKKGEK 157 (172)
T ss_dssp HHHHHTTCH
T ss_pred HHHHHhhhH
Confidence 888887754
No 251
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.65 E-value=0.7 Score=41.44 Aligned_cols=105 Identities=8% Similarity=-0.070 Sum_probs=62.5
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchH
Q 015416 48 VVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSF 127 (407)
Q Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 127 (407)
.++..++..|.+.|+++.|.+.|.++...-.+...-...+..+++.+...+++..+...+.++...-........-....
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35677888888888888888888887764322333456677777888888888888888877654321111000000011
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhh
Q 015416 128 NVMADGYCGQGRFKDAIEVFRKMGE 152 (407)
Q Consensus 128 ~~l~~~~~~~g~~~~A~~~~~~~~~ 152 (407)
..-+..+...+++..|...|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1122234456777777777666543
No 252
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.55 E-value=0.94 Score=40.60 Aligned_cols=101 Identities=14% Similarity=-0.062 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHH---
Q 015416 12 VYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANN--- 88 (407)
Q Consensus 12 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--- 88 (407)
+...+...|.+.|+++.|.++|.++.....+...-...+-.+++.+...+++..+...+.++...... .++....+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~-~~d~~~~~~lk 211 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK-GGDWERRNRYK 211 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT-CCCTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc-CCCHHHHHHHH
Confidence 45678899999999999999999999874343344567888999999999999999999988643211 11222211
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 89 -SVLDALCNNGKFDEALKLFDRMKNE 113 (407)
Q Consensus 89 -~l~~~~~~~~~~~~A~~~~~~~~~~ 113 (407)
.-+..+...+++..|.+.|-++...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1222345678999999999887654
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.98 E-value=1.4 Score=45.14 Aligned_cols=53 Identities=13% Similarity=0.100 Sum_probs=33.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015416 15 YLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAV 74 (407)
Q Consensus 15 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 74 (407)
.++..+...+.++-+.++..- .+.++..-..++.+|...|++++|.++|.++-
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-------~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhhhHHHHHHHhhh-------ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 345555566666655543322 22345555667888888899999988887753
No 254
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.65 E-value=0.85 Score=30.85 Aligned_cols=43 Identities=9% Similarity=0.176 Sum_probs=20.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 215 TYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 257 (407)
+-+..+....+.|++.+..+.+++|.+.+++..|.++|+.+..
T Consensus 31 rglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 31 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444444444444444
No 255
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=92.36 E-value=5.4 Score=35.03 Aligned_cols=302 Identities=10% Similarity=0.034 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCcc--CCcchHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCCCCchhhH
Q 015416 11 VVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVV--SDGVVYGSLMKGYFMK-GMEEEAMECYNEAVGENSSVKMSAVAN 87 (407)
Q Consensus 11 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~ 87 (407)
.....|...|.+.|+.++..+++.......+.++ -.......++..+... +..+.-.++..+.++.. .-...+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a---~~~~r~f 96 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA---KQEKRTF 96 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH---HHTTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH---HHHHHHH
Confidence 3456788999999999999998887655321111 1223456677777654 33444444444444321 0011223
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCCH
Q 015416 88 ------NSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEY--RCSPDT 159 (407)
Q Consensus 88 ------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 159 (407)
..++..|...|++.+|.+++.++.+.-...+.-..-..++..-+..|...+++.++...+...... .+.+++
T Consensus 97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence 267899999999999999999887643222221223446677788899999999999999877542 222444
Q ss_pred HHHH----HHHHHHH-HcCCHHHHHHHHHHHHhC-C-C-CCC---HHHHHHHHHHHHhcCChHHHHHHHH-HHHHCCCCC
Q 015416 160 LSFN----NLIDQLC-KNGMLAEAEELYGEMSDK-G-V-NPD---EYTYGLLMDACFEVNRVDDGATYFR-KMVDSGLRP 227 (407)
Q Consensus 160 ~~~~----~l~~~~~-~~g~~~~a~~~~~~~~~~-~-~-~p~---~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~ 227 (407)
.... .-+..+. ..++|..|...|-+..+. . . .|. ...|.. +.+.. .++..+...++. .....-..|
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlv-L~aLl-~~~r~el~~~l~~~~~~~~~~p 254 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYML-LCKIM-LGQSDDVNQLVSGKLAITYSGR 254 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHHHH-TTCGGGHHHHHHSHHHHTTCSH
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHH-HHHHH-cCCHHHHHHHhccccccccCCc
Confidence 3322 2233455 689999999888776421 1 0 111 112222 22222 233333223222 111111245
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Q 015416 228 NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKG 307 (407)
Q Consensus 228 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 307 (407)
....+..++.+| ..+++.....++.........|+.....+-..+.+ --...+.++.. +-....+..++.
T Consensus 255 ei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~-----Ir~~~L~~i~~----pYsrIsl~~iA~ 324 (394)
T 3txn_A 255 DIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDT-----MLEQNLCRIIE----PYSRVQVAHVAE 324 (394)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHH-----HHHHHHHHHHT----TCSEEEHHHHHH
T ss_pred cHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH-----HHHHHHHHHhH----hhceeeHHHHHH
Confidence 555566666664 45577776666666554444455422111111100 01111222222 223345555555
Q ss_pred HHhhcCcHHHHHHHHHHHHHhh
Q 015416 308 ELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 308 ~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
.+. . ..+++...+-+|...|
T Consensus 325 ~l~-l-s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 325 SIQ-L-PMPQVEKKLSQMILDK 344 (394)
T ss_dssp HHT-C-CHHHHHHHHHHHHHTT
T ss_pred HHC-c-CHHHHHHHHHHHHHCC
Confidence 443 2 5667777777776544
No 256
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.94 E-value=2.3 Score=30.56 Aligned_cols=67 Identities=6% Similarity=0.035 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 226 RPNLAVYNRLVGKLVQVGML---DEAKSFFDIMVKKLKM-DDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 226 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
.|+..+-..+..++.+..+. ..++.+++.+....+. ....+..+..++.+.|++++|.++.+.+++.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 45556656666666665543 2456666655553321 2445556666666666666666666666654
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.25 E-value=4.7 Score=28.96 Aligned_cols=72 Identities=10% Similarity=0.026 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 015416 191 NPDEYTYGLLMDACFEVNRV---DDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMD 262 (407)
Q Consensus 191 ~p~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 262 (407)
.|+..+--.+..++.+.... ..++.+++.+.+.+..-....+..|.-++.+.|+++.|.++.+.+++..|.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 34444444444444444332 2445555555543211112244445555555555555555555555533333
No 258
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.18 E-value=5.7 Score=28.56 Aligned_cols=54 Identities=11% Similarity=0.201 Sum_probs=26.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 015416 215 TYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKF 268 (407)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 268 (407)
+-++.+....+.|++.+....+++|.+.+++..|.++|+.+.....+...+|-.
T Consensus 74 rglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y 127 (152)
T 2y69_E 74 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPY 127 (152)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHH
Confidence 334444444455555555555555555555555555555555533333333433
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.95 E-value=4.1 Score=33.38 Aligned_cols=54 Identities=7% Similarity=0.152 Sum_probs=39.2
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015416 203 ACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 203 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 257 (407)
...+.|.++++++....-++.. +-|...-..|++.+|-.|+|+.|.+-++...+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4556777777777777777653 55666777777888888888888777777766
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.64 E-value=14 Score=31.47 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=16.8
Q ss_pred ccchHHHHHHHHHhcCCHHHHHHHH
Q 015416 123 NLGSFNVMADGYCGQGRFKDAIEVF 147 (407)
Q Consensus 123 ~~~~~~~l~~~~~~~g~~~~A~~~~ 147 (407)
++.....+...|.+.+++.+|...|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 5556666777777777777776665
No 261
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.43 E-value=5.8 Score=26.86 Aligned_cols=62 Identities=15% Similarity=0.128 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Q 015416 244 MLDEAKSFFDIMVK-KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKG 307 (407)
Q Consensus 244 ~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 307 (407)
+.-+..+-++.+.. ..-|++......+++|.+.+++..|+++|+.+..+.+ ....+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 44566666776666 6788999999999999999999999999998887743 33556766654
No 262
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=84.98 E-value=9.3 Score=27.84 Aligned_cols=67 Identities=6% Similarity=0.047 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 226 RPNLAVYNRLVGKLVQVGMLD---EAKSFFDIMVKKLKM-DDASYKFMMKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 226 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
.|+..+-..+..++.+..+.+ +++.+++.+....+. .......+..++.+.|++++|.++.+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 455555555666666555433 455555555553332 3344555556666666666666666666664
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.05 E-value=19 Score=30.69 Aligned_cols=131 Identities=15% Similarity=0.196 Sum_probs=65.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----HHHHhCCCCCCHHHHHHHHH
Q 015416 127 FNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELY----GEMSDKGVNPDEYTYGLLMD 202 (407)
Q Consensus 127 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~p~~~~~~~l~~ 202 (407)
|.++..=|.+++++++|++++..-.. .+.+.|+...|-++- +-+.+.++++|......++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34444557777888888876644211 222334333332222 22333445555555555555
Q ss_pred HHHhcCChH-HHHHHHHHHH----HCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 015416 203 ACFEVNRVD-DGATYFRKMV----DSG--LRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSD 275 (407)
Q Consensus 203 ~~~~~g~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 275 (407)
.+.....-+ .-..+.+.++ +.| ..-++.....++..|.+.+++.+|...|- . +..+.+..+..++.-+..
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l-g~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L-GTKESPEVLARMEYEWYK 179 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T-SCTTHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h-cCCchHHHHHHHHHHHHH
Confidence 554433211 1122222222 112 23366677778888888888888877763 1 222333555555444433
No 264
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=83.92 E-value=29 Score=32.66 Aligned_cols=153 Identities=13% Similarity=0.082 Sum_probs=87.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH----HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 015416 173 GMLAEAEELYGEMSDKGVNPDEYTYGLLMD----ACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEA 248 (407)
Q Consensus 173 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 248 (407)
.+.+.|...|....+.. ..+......+-. .....+...++...+...... .++.......+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHH
Confidence 36778888887775432 223322222222 222334244566666665442 23444444444555567888888
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----------CCC-------CcH------H--HH
Q 015416 249 KSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDG-----------GIE-------FSE------E--LQ 302 (407)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------~~~-------~~~------~--~~ 302 (407)
...|..+............-+.+++...|+.++|..+|..+.... |.+ ++. . ..
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~ 384 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPE 384 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHH
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChH
Confidence 888888766333345556667777888888888888887765421 111 000 0 11
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHHh
Q 015416 303 EFVKGELSKEGREEEVVKLMEKKERE 328 (407)
Q Consensus 303 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 328 (407)
..-+..+...|....|...+..+...
T Consensus 385 ~~r~~~L~~~g~~~~a~~ew~~~~~~ 410 (618)
T 1qsa_A 385 MARVRELMYWNLDNTARSEWANLVKS 410 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCChhhHHHHHHHHHhc
Confidence 12244577888888888887776643
No 265
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=83.67 E-value=19 Score=30.39 Aligned_cols=25 Identities=12% Similarity=0.005 Sum_probs=15.3
Q ss_pred ccchHHHHHHHHHhcCCHHHHHHHH
Q 015416 123 NLGSFNVMADGYCGQGRFKDAIEVF 147 (407)
Q Consensus 123 ~~~~~~~l~~~~~~~g~~~~A~~~~ 147 (407)
++.....+...|.+.|++.+|...|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 4455666666666666666666554
No 266
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.64 E-value=10 Score=27.28 Aligned_cols=62 Identities=13% Similarity=0.088 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Q 015416 244 MLDEAKSFFDIMVK-KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKG 307 (407)
Q Consensus 244 ~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 307 (407)
+.-+..+-++.+.. ..-|++......+++|.+.+++..|+++|+.+..+- .+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 34455566666655 678899999999999999999999999999988874 344566776654
No 267
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.30 E-value=11 Score=27.43 Aligned_cols=67 Identities=10% Similarity=0.025 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 015416 192 PDEYTYGLLMDACFEVNRV---DDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK 258 (407)
Q Consensus 192 p~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 258 (407)
|+..+--.+..++.+.... .+++.+++.+...+..-.......|.-++.+.|++++|.++.+.+++.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3444433444444444332 244445555444221112223344445555555555555555555553
No 268
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=82.42 E-value=21 Score=30.08 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015416 228 NLAVYNRLVGKLVQVGMLDEAKSFFD 253 (407)
Q Consensus 228 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 253 (407)
++.....++..|.+.|++.+|...|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 56677777777777777777776664
No 269
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=73.05 E-value=33 Score=27.54 Aligned_cols=92 Identities=11% Similarity=0.058 Sum_probs=52.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHhhCCccC----CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHH
Q 015416 16 LMLGFVRDGDSDGVFRLFEELKEKLGGVVS----DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVL 91 (407)
Q Consensus 16 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (407)
-++.+....++++|.+++++..+...+.++ ........+..-.....-.-+..+.+.+.. . +........+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~-~----~~~~~~r~~v 98 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS-S----NEIVHLKSGT 98 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT-C----SSHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-c----CCHHHHHHHH
Confidence 456778888999999998888765333332 112223333333333333444444444422 1 2344455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 015416 92 DALCNNGKFDEALKLFDRMKN 112 (407)
Q Consensus 92 ~~~~~~~~~~~A~~~~~~~~~ 112 (407)
..+.+.|+.++|..+|-+...
T Consensus 99 ~~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 99 ENMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCChhHHHHHHHHHHH
Confidence 777778888888887766543
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=69.86 E-value=37 Score=26.41 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 015416 140 FKDAIEVFRKMGEYRCSPD-TLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNP 192 (407)
Q Consensus 140 ~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 192 (407)
...+..+|..|...|+-.. ...|-.....+...|++.+|..+|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3344455555544433222 2234444444444555555555555544444443
No 271
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.46 E-value=67 Score=29.27 Aligned_cols=68 Identities=10% Similarity=0.064 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 015416 194 EYTYGLLMDACFEVNRVDDGATYFRKMVDSG-LRPNL---AVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKM 261 (407)
Q Consensus 194 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 261 (407)
...++.++..|...+.++.|..+..+..--. ..++. .-+.-++..+.-.+++.+|.+.+.......|+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 4456666777777777777777776664100 01111 12223455666677777777777766654443
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=68.14 E-value=29 Score=28.18 Aligned_cols=52 Identities=17% Similarity=0.057 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcc---hHHHHHHHHHHcCCHHHHHHHHH
Q 015416 14 SYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGV---VYGSLMKGYFMKGMEEEAMECYN 71 (407)
Q Consensus 14 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~ 71 (407)
++.+...++.|+++....++ +. +..++.. .-...+...+..|+.+-+..+++
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll----~~--g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 60 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLL----EG--GANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHH----HT--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred chHHHHHHHcCCHHHHHHHH----Hc--CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence 34555667788876555544 33 3333221 11234555566777765554443
No 273
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=65.58 E-value=44 Score=25.74 Aligned_cols=154 Identities=18% Similarity=0.005 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 015416 157 PDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLV 236 (407)
Q Consensus 157 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 236 (407)
++...-...+..+...+.. .+...+..+.. .++...-...+.++...+..+ +...+..+.. .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 4566555566666666653 33344444443 246666666666666666543 3344444443 45666666777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHH
Q 015416 237 GKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREE 316 (407)
Q Consensus 237 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 316 (407)
.++...++.+ +...+..+. ..++..+-...+.++...|.. ++...+..++. .++..+....+.++.+.|. +
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l--~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~-~ 173 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKAL--KDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK----DEDGWVRQSAADALGEIGG-E 173 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHT--TCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT----CSSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHhCcHH-HHHHHHHHH--hCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc----CCCHHHHHHHHHHHHHhCc-h
Confidence 7777777643 334444444 245666777777777777664 35555555554 3556666667777777776 4
Q ss_pred HHHHHHHHHHH
Q 015416 317 EVVKLMEKKER 327 (407)
Q Consensus 317 ~A~~~~~~~~~ 327 (407)
++...+.++..
T Consensus 174 ~~~~~L~~~l~ 184 (211)
T 3ltm_A 174 RVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 45555555544
No 274
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=63.03 E-value=50 Score=25.44 Aligned_cols=167 Identities=14% Similarity=0.002 Sum_probs=84.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACF 205 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 205 (407)
+-...+..+.+.|.. .+...+..+.. .++...-...+.++...+.. .+...+..+.. .++...-...+.++.
T Consensus 35 vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~ 106 (211)
T 3ltm_A 35 VRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALG 106 (211)
T ss_dssp HHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 333444444444442 23333333333 24555555555556655543 23333333432 345556666666666
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015416 206 EVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEI 285 (407)
Q Consensus 206 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 285 (407)
..+..+ +...+..+.. .++..+-...+.++...|..+ +...+..+.. .++..+-...+.++.+.+. .++...
T Consensus 107 ~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~--d~~~~vr~~a~~aL~~~~~-~~~~~~ 178 (211)
T 3ltm_A 107 QIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK--DEDGWVRQSAADALGEIGG-ERVRAA 178 (211)
T ss_dssp HHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT--CSSHHHHHHHHHHHHHHCS-HHHHHH
T ss_pred HhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc--CCCHHHHHHHHHHHHHhCc-hhHHHH
Confidence 666643 3334444443 456666666666666666543 3444444442 3456666666777766665 455666
Q ss_pred HHHHHhcCCCCCcHHHHHHHHHHHhhc
Q 015416 286 VGGILDDGGIEFSEELQEFVKGELSKE 312 (407)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~~~~~~~ 312 (407)
+..+... ++..+......++.+.
T Consensus 179 L~~~l~d----~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 179 MEKLAET----GTGFARKVAVNYLETH 201 (211)
T ss_dssp HHHHHHH----CCHHHHHHHHHHHHC-
T ss_pred HHHHHhC----CCHHHHHHHHHHHHhc
Confidence 6666553 3444444444444443
No 275
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=60.46 E-value=31 Score=30.82 Aligned_cols=141 Identities=13% Similarity=0.061 Sum_probs=76.6
Q ss_pred CChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCHHHH
Q 015416 24 GDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKFDEA 103 (407)
Q Consensus 24 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 103 (407)
.+.+-|.++-. +. |.+--...|..-...+...|++++|..+--..... +-.+..|.+.+-.+=...|+..--
T Consensus 343 ~n~~lA~~lA~---R~--~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~g---iLRt~~Ti~rFk~vp~~pgq~spl 414 (494)
T 1bpo_A 343 QNPDLALRMAV---RN--NLAGAEELFARKFNALFAQGNYSEAAKVAANAPKG---ILRTPDTIRRFQSVPAQPGQTSPL 414 (494)
T ss_dssp CCHHHHHHHHH---HT--TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGG---SSCSHHHHHHHTTSCCCTTSCCHH
T ss_pred CCHHHHHHHHH---hc--CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccc---cccCHHHHHHHhcCCCCCCCCCHH
Confidence 45554544432 21 55555556777777888889999988876555432 334455555544433444555566
Q ss_pred HHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 015416 104 LKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYG 183 (407)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 183 (407)
+.+|..+.+.+.- +..--.-+++.-..+|+.+-..+++.+=.- ..+...=. ++ +..+..-|+.+|.
T Consensus 415 L~YF~~Ll~~g~L------n~~ESlEl~r~vL~q~r~~llekWl~e~KL---~~SEeLGD-lv----k~~d~~LAl~IY~ 480 (494)
T 1bpo_A 415 LQYFGILLDQGQL------NKYESLELCRPVLQQGRKQLLEKWLKEDKL---ECSEELGD-LV----KSVDPTLALSVYL 480 (494)
T ss_dssp HHHHHHHHHHSCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTCS---CCCHHHHH-HH----HHHCSHHHHHHHH
T ss_pred HHHHHHHhccCcc------chHHhhHHhHHHHhccHHHHHHHHHhcCCc---cccHHhHh-hh----hhcCHHHHHHHHH
Confidence 6666666665432 222223345555667777777776665321 23333221 11 3335566666666
Q ss_pred HHH
Q 015416 184 EMS 186 (407)
Q Consensus 184 ~~~ 186 (407)
+..
T Consensus 481 ~a~ 483 (494)
T 1bpo_A 481 RAN 483 (494)
T ss_dssp HHC
T ss_pred HcC
Confidence 554
No 276
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=59.22 E-value=61 Score=25.20 Aligned_cols=53 Identities=13% Similarity=-0.031 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHHhh
Q 015416 277 GKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLMEKKEREK 329 (407)
Q Consensus 277 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 329 (407)
+...++..+|..|....--.--...|...+..+...|++++|.++++.=...+
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 33556777777776653223444566667777777777777777777655544
No 277
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=56.66 E-value=57 Score=24.04 Aligned_cols=50 Identities=12% Similarity=0.077 Sum_probs=26.1
Q ss_pred HHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 015416 143 AIEVFRKMGEYRCSPD-TLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNP 192 (407)
Q Consensus 143 A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 192 (407)
+.++|..|...|+-.. ...|......+-..|++.+|..+|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5555555555544332 2234455555555566666666666555554444
No 278
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=55.73 E-value=73 Score=25.01 Aligned_cols=23 Identities=4% Similarity=0.086 Sum_probs=13.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 015416 270 MKALSDGGKLDEILEIVGGILDD 292 (407)
Q Consensus 270 ~~~~~~~g~~~~A~~~~~~~~~~ 292 (407)
+..|.+.|.+++|.+++++....
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHhcchHHHHHHHHHHhcC
Confidence 34455666666666666665553
No 279
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.23 E-value=67 Score=29.30 Aligned_cols=25 Identities=16% Similarity=0.476 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHH
Q 015416 12 VYSYLMLGFVRDGDSDGVFRLFEEL 36 (407)
Q Consensus 12 ~~~~li~~~~~~g~~~~A~~~~~~~ 36 (407)
.+|.+++.|...+.++.|..+....
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcC
Confidence 3555555555555555555555443
No 280
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=52.43 E-value=51 Score=22.27 Aligned_cols=11 Identities=36% Similarity=0.890 Sum_probs=4.4
Q ss_pred HhcCCHHHHHH
Q 015416 135 CGQGRFKDAIE 145 (407)
Q Consensus 135 ~~~g~~~~A~~ 145 (407)
.+.|+|++|..
T Consensus 50 mNrG~Yq~Al~ 60 (115)
T 2uwj_G 50 ANQGRYQEALA 60 (115)
T ss_dssp HHTTCHHHHHG
T ss_pred HcchhHHHHHH
Confidence 33444444433
No 281
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=51.82 E-value=73 Score=23.83 Aligned_cols=51 Identities=6% Similarity=0.151 Sum_probs=27.5
Q ss_pred HHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 015416 143 AIEVFRKMGEYRCSPD-TLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPD 193 (407)
Q Consensus 143 A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 193 (407)
...+|..|...|+-.. ...|-.....+-..|++.+|.++|+.-++.+..|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 4455555555554333 23445555555556666666666666665555553
No 282
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=51.37 E-value=54 Score=22.20 Aligned_cols=14 Identities=14% Similarity=0.304 Sum_probs=5.8
Q ss_pred HHhcCCHHHHHHHH
Q 015416 134 YCGQGRFKDAIEVF 147 (407)
Q Consensus 134 ~~~~g~~~~A~~~~ 147 (407)
+.+.|+|++|..+.
T Consensus 50 LmNrG~Yq~Al~l~ 63 (116)
T 2p58_C 50 LMNRGDYASALQQG 63 (116)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHcchhHHHHHHhc
Confidence 33444444444433
No 283
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=50.65 E-value=55 Score=22.11 Aligned_cols=11 Identities=27% Similarity=0.302 Sum_probs=4.7
Q ss_pred HHcCCHHHHHH
Q 015416 170 CKNGMLAEAEE 180 (407)
Q Consensus 170 ~~~g~~~~a~~ 180 (407)
.+.|+|++|..
T Consensus 50 mNrG~Yq~Al~ 60 (115)
T 2uwj_G 50 ANQGRYQEALA 60 (115)
T ss_dssp HHTTCHHHHHG
T ss_pred HcchhHHHHHH
Confidence 34444444443
No 284
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=49.91 E-value=74 Score=23.41 Aligned_cols=50 Identities=6% Similarity=0.139 Sum_probs=32.3
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 015416 178 AEELYGEMSDKGVNPD-EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRP 227 (407)
Q Consensus 178 a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 227 (407)
+..+|..|...|+-.. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 6667777766554433 4456666666667777777777777777665555
No 285
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=49.17 E-value=59 Score=22.02 Aligned_cols=13 Identities=31% Similarity=0.261 Sum_probs=5.7
Q ss_pred HHHcCCHHHHHHH
Q 015416 169 LCKNGMLAEAEEL 181 (407)
Q Consensus 169 ~~~~g~~~~a~~~ 181 (407)
+.+.|+|++|..+
T Consensus 50 LmNrG~Yq~Al~l 62 (116)
T 2p58_C 50 LMNRGDYASALQQ 62 (116)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHcchhHHHHHHh
Confidence 3344444444443
No 286
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=49.12 E-value=79 Score=24.83 Aligned_cols=49 Identities=10% Similarity=0.055 Sum_probs=30.3
Q ss_pred hhhHHHHHHHHHHhhCCccCCcch--------HHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 015416 26 SDGVFRLFEELKEKLGGVVSDGVV--------YGSLMKGYFMKGMEEEAMECYNEAVGEN 77 (407)
Q Consensus 26 ~~~A~~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 77 (407)
++.|+.+|+.+.+. . +.+... --..+..|.+.|.+++|.+++++.....
T Consensus 88 LESAl~v~~~I~~e--~-~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~ 144 (235)
T 3bu8_A 88 LESAINVLEMIKTE--F-TLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKD 144 (235)
T ss_dssp HHHHHHHHHHHHHH--T-TCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHh--h-cCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 56788888887775 1 111111 1133455777888888888888877643
No 287
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=47.70 E-value=2.2e+02 Score=28.45 Aligned_cols=89 Identities=9% Similarity=-0.033 Sum_probs=48.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------------------
Q 015416 235 LVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDG--------------------- 293 (407)
Q Consensus 235 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------------- 293 (407)
++..+...|.++-|.+ +....+.++..-..++++|...|++++|..+|+++-..-
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 4444455555543332 223333344444455555666666666666665442110
Q ss_pred CCCCcHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 015416 294 GIEFSEELQEFVKGELSKEGREEEVVKLMEKKER 327 (407)
Q Consensus 294 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 327 (407)
........|..++..+.+.+-++.+.++.+....
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 0011223677888888888888888888777764
No 288
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=47.58 E-value=1e+02 Score=24.37 Aligned_cols=51 Identities=14% Similarity=0.391 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 015416 142 DAIEVFRKMGEYRCSPD-TLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNP 192 (407)
Q Consensus 142 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 192 (407)
....+|..|...|+-.. ...|-.....+-..|++.+|..+|+.-++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44455555555444332 2234445555555555555555555555544444
No 289
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=44.91 E-value=1.2e+02 Score=24.28 Aligned_cols=90 Identities=8% Similarity=0.016 Sum_probs=45.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 015416 200 LMDACFEVNRVDDGATYFRKMVDS--GLRP----NLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKAL 273 (407)
Q Consensus 200 l~~~~~~~g~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 273 (407)
-++.+....++++|..++++..+. ++++ ........+..-.....-.-+..+.+.+. . .+.+......+..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~-~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S-SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T-CSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h-cCCHHHHHHHHHHH
Confidence 456677777777777777765531 1221 00111222222222222222333333332 2 44555566666777
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 015416 274 SDGGKLDEILEIVGGILD 291 (407)
Q Consensus 274 ~~~g~~~~A~~~~~~~~~ 291 (407)
.+.|+.++|..+|-+...
T Consensus 102 ~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHHH
Confidence 777777777777766654
No 290
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=44.54 E-value=74 Score=23.39 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=11.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 015416 233 NRLVGKLVQVGMLDEAKSFFDIM 255 (407)
Q Consensus 233 ~~l~~~~~~~g~~~~A~~~~~~~ 255 (407)
..++.-|...|+.++|...++.+
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 33444455555555555555544
No 291
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=44.49 E-value=97 Score=23.16 Aligned_cols=51 Identities=10% Similarity=0.201 Sum_probs=34.3
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 015416 178 AEELYGEMSDKGVNPD-EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPN 228 (407)
Q Consensus 178 a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 228 (407)
...+|..|...|+-.. ...|......+-..|++.+|.++|..-++.+-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 5567777776655433 44566666677777777777777777777666664
No 292
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=44.14 E-value=1.9e+02 Score=26.33 Aligned_cols=75 Identities=16% Similarity=0.062 Sum_probs=49.2
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHH
Q 015416 16 LMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALC 95 (407)
Q Consensus 16 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (407)
|.+...-...++.|...|...... .|-+...||.|+-.....|+.-.|+-.|-+.+... .|-..+..+|...+.
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~---~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~---~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQL---VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK---FPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS---BCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHh---CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcC---CCChhHHHHHHHHHH
Confidence 333334445667778888777775 44467778888777777777777777777776554 455566666665554
Q ss_pred h
Q 015416 96 N 96 (407)
Q Consensus 96 ~ 96 (407)
+
T Consensus 232 ~ 232 (497)
T 1ya0_A 232 K 232 (497)
T ss_dssp H
T ss_pred H
Confidence 3
No 293
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=43.16 E-value=86 Score=22.21 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=12.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 015416 233 NRLVGKLVQVGMLDEAKSFFDIMV 256 (407)
Q Consensus 233 ~~l~~~~~~~g~~~~A~~~~~~~~ 256 (407)
..++.-|...|+.++|...++.+.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 344555555555555555555543
No 294
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=43.00 E-value=37 Score=26.90 Aligned_cols=54 Identities=24% Similarity=0.355 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 015416 101 DEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPD 158 (407)
Q Consensus 101 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 158 (407)
+.+..+|..|...++... -+..|......+-..|++.+|..+|+.-++.+..|-
T Consensus 131 ~~p~~if~~L~~~~IG~~----~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQE----SSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTT----BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchh----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 577889999998887643 555788899999999999999999999988776664
No 295
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=41.70 E-value=1.1e+02 Score=22.84 Aligned_cols=52 Identities=8% Similarity=0.066 Sum_probs=29.5
Q ss_pred hcCChhhHHHHHHHHHHhhCCccC--CcchHHHHHH-H-----HHHcCCHHHHHHHHHHHHh
Q 015416 22 RDGDSDGVFRLFEELKEKLGGVVS--DGVVYGSLMK-G-----YFMKGMEEEAMECYNEAVG 75 (407)
Q Consensus 22 ~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~~~~ 75 (407)
..|++=+|.++++.+-.. ...+ ....|..||. + ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~--~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYN--YGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTT--TCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 347777777777776654 2222 3344555555 1 2345677777776666654
No 296
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=39.80 E-value=3e+02 Score=27.49 Aligned_cols=48 Identities=13% Similarity=0.052 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcC
Q 015416 161 SFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDE----YTYGLLMDACFEVN 208 (407)
Q Consensus 161 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g 208 (407)
-|.-++..+-+.+.++.+.++-+.+++.--.-|. ..|..+..+.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 5677888888889999888888888764222222 24666666665544
No 297
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=39.76 E-value=1.3e+02 Score=23.31 Aligned_cols=17 Identities=12% Similarity=0.208 Sum_probs=8.2
Q ss_pred CCHHHHHHHHHHHHhCC
Q 015416 173 GMLAEAEELYGEMSDKG 189 (407)
Q Consensus 173 g~~~~a~~~~~~~~~~~ 189 (407)
.+.+.|+-.+-+|++.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 34444444444444444
No 298
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=39.59 E-value=2.2e+02 Score=25.85 Aligned_cols=72 Identities=17% Similarity=0.099 Sum_probs=37.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015416 167 DQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLV 240 (407)
Q Consensus 167 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 240 (407)
........++.|...|.++... .+-+...|+.|.-.....|+.-.|.-.|-+.+.. ..|-..+..+|...+.
T Consensus 160 DL~RY~~~~~~A~~~Y~~A~~~-~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~-~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 160 DIARYRNQTSQAESYYRHAAQL-VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-KFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SBCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHh-CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc-CCCChhHHHHHHHHHH
Confidence 3333444555666666666553 1223455666665555555555555555554433 2445555555555544
No 299
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=39.30 E-value=1.1e+02 Score=22.18 Aligned_cols=34 Identities=12% Similarity=0.134 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 015416 210 VDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG 243 (407)
Q Consensus 210 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 243 (407)
.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3445555555554443444444444444444443
No 300
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=38.32 E-value=1.2e+02 Score=22.32 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=12.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 015416 163 NNLIDQLCKNGMLAEAEELYGEM 185 (407)
Q Consensus 163 ~~l~~~~~~~g~~~~a~~~~~~~ 185 (407)
+.++.-|...|+.++|...++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 34455555555555555555555
No 301
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=38.14 E-value=62 Score=19.32 Aligned_cols=29 Identities=7% Similarity=0.095 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHhhCCccCCcchHHHHHHHH
Q 015416 27 DGVFRLFEELKEKLGGVVSDGVVYGSLMKGY 57 (407)
Q Consensus 27 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 57 (407)
++|...|.+|++. ...++.-+|...++..
T Consensus 3 eEae~aF~~lL~~--~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKE--NQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHH--TTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHH--cCCCCCCcHHHHHHHh
Confidence 5666677776665 4444555666666655
No 302
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=37.84 E-value=1.4e+02 Score=23.09 Aligned_cols=18 Identities=17% Similarity=0.100 Sum_probs=8.4
Q ss_pred CCHHHHHHHHHHHHhCCC
Q 015416 173 GMLAEAEELYGEMSDKGV 190 (407)
Q Consensus 173 g~~~~a~~~~~~~~~~~~ 190 (407)
.+.+.|+-.+-+|++.|-
T Consensus 21 SDpDAAly~LaRMl~~GE 38 (201)
T 3bge_A 21 SAPDAALYWYARILTAGG 38 (201)
T ss_dssp TCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 344444444444444443
No 303
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=37.80 E-value=1.4e+02 Score=23.13 Aligned_cols=52 Identities=13% Similarity=0.022 Sum_probs=27.4
Q ss_pred HHHHHhcCChhhHHHHHHHHHHhhCCccCCcch--HHHHHHHHHHcCCHHHHHHHH
Q 015416 17 MLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVV--YGSLMKGYFMKGMEEEAMECY 70 (407)
Q Consensus 17 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~ 70 (407)
+...++.|+.+.+..+++.+.+. +..++... -...+...+..|+.+-+..++
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 66 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQG--GRELDIYNNLRQTPLHLAVITTLPSVVRLLV 66 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCCCCcccccCCCHHHHHHHcCCHHHHHHHH
Confidence 44556678877777777766554 43333221 122344445566665444443
No 304
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=37.44 E-value=1.1e+02 Score=21.99 Aligned_cols=57 Identities=7% Similarity=0.057 Sum_probs=24.0
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 015416 186 SDKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG 243 (407)
Q Consensus 186 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 243 (407)
.+.|++++..- ..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 14 ~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 14 KETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 34444444322 2233333333344445555555554433334444444444444443
No 305
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=37.16 E-value=1.4e+02 Score=23.07 Aligned_cols=77 Identities=14% Similarity=0.091 Sum_probs=41.7
Q ss_pred HHHHHHH---hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHh-cCCCCHHHHHHH
Q 015416 199 LLMDACF---EVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGML-----DEAKSFFDIMVK-KLKMDDASYKFM 269 (407)
Q Consensus 199 ~l~~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-----~~A~~~~~~~~~-~~~~~~~~~~~l 269 (407)
.+++++. +..+.+.|+-++-+|++.| .|....-..++.+.-..|.- ..|...++.... +.|--.......
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqa 94 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLADV 94 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3445543 4578888888888888888 66554555555555555542 223334444433 444444444333
Q ss_pred HHHHHhc
Q 015416 270 MKALSDG 276 (407)
Q Consensus 270 ~~~~~~~ 276 (407)
+..++..
T Consensus 95 viyLA~a 101 (204)
T 2r9g_A 95 VVDLCLS 101 (204)
T ss_dssp HHHHHHS
T ss_pred HHHHHcC
Confidence 3333333
No 306
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=36.51 E-value=1.3e+02 Score=22.36 Aligned_cols=52 Identities=12% Similarity=0.080 Sum_probs=28.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHh
Q 015416 206 EVNRVDDGATYFRKMVDSGLRP--NLAVYNRLVG-K-----LVQVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 206 ~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~~~~ 257 (407)
..|++-+|.++++.+-.....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3466666666666666443333 3334555555 1 2345666666666666655
No 307
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=36.01 E-value=1.1e+02 Score=21.28 Aligned_cols=66 Identities=8% Similarity=0.117 Sum_probs=34.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhcCCHH
Q 015416 209 RVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVK--KLKMDDASYKFMMKALSDGGKLD 280 (407)
Q Consensus 209 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 280 (407)
.+.+|..-+++.... ++|......+++.+.. -++.++++.....+ +. .+.++...++...+.|-.+
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~--t~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~ 70 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEF--TFELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLP 70 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCC
Confidence 455666666666543 4555555566655544 24555555555554 33 3444455555555554443
No 308
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=34.68 E-value=1.3e+02 Score=21.85 Aligned_cols=59 Identities=15% Similarity=0.300 Sum_probs=28.4
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 015416 185 MSDKGVNPDEYTYGLLMDACFEVN-RVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244 (407)
Q Consensus 185 ~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 244 (407)
+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 8 l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 8 LKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 3445555543322 2333333333 444566666666655444455555555555555443
No 309
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=34.49 E-value=2.6e+02 Score=25.16 Aligned_cols=86 Identities=13% Similarity=0.186 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 015416 194 EYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKAL 273 (407)
Q Consensus 194 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 273 (407)
...|..-.+.+...|++++|-++--.... |+--+..+.+.+-..=...|...--+.+|..+.+....+..--.-+++.-
T Consensus 361 d~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g~Ln~~ESlEl~r~v 439 (494)
T 1bpo_A 361 EELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQLNKYESLELCRPV 439 (494)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccCccchHHhhHHhHHH
Confidence 33344444445555555555544443332 22223444433333223333444444444444443333333223333333
Q ss_pred HhcCCHH
Q 015416 274 SDGGKLD 280 (407)
Q Consensus 274 ~~~g~~~ 280 (407)
...|+.+
T Consensus 440 L~q~r~~ 446 (494)
T 1bpo_A 440 LQQGRKQ 446 (494)
T ss_dssp HHTTCHH
T ss_pred HhccHHH
Confidence 3344433
No 310
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=34.37 E-value=1.4e+02 Score=26.74 Aligned_cols=62 Identities=18% Similarity=0.181 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcc--------hH-HHHHHHHHHcCCHHHHHHHHHHHHhC
Q 015416 13 YSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGV--------VY-GSLMKGYFMKGMEEEAMECYNEAVGE 76 (407)
Q Consensus 13 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------~~-~~l~~~~~~~g~~~~A~~~~~~~~~~ 76 (407)
.|.|...|.+.++..-+..+++.+... +..|+.. +| .-+++.+...+++.+|.+.+..+...
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~--~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPK--SMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHH--CCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccC--CCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 466667777777777777777766665 3322221 12 23455555666666666666665543
No 311
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=33.67 E-value=62 Score=23.13 Aligned_cols=45 Identities=11% Similarity=0.103 Sum_probs=19.4
Q ss_pred HHHHHHHcC-CHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCC
Q 015416 53 LMKGYFMKG-MEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGK 99 (407)
Q Consensus 53 l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 99 (407)
++..+...+ ..-.|.++++.+.+.+++ .+..|.-.-+..+...|-
T Consensus 23 Il~~L~~~~~~~~sa~ei~~~l~~~~~~--is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 23 ILQMLDSAEQRHMSAEDVYKALMEAGED--VGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHHHCC-CCSBCHHHHHHHHHHTTCC--CCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHhhCCC--CCHHHHHHHHHHHHHCCc
Confidence 333333333 445555555555555432 233333333444444443
No 312
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=33.60 E-value=1.3e+02 Score=21.40 Aligned_cols=58 Identities=12% Similarity=0.209 Sum_probs=26.6
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 015416 185 MSDKGVNPDEYTYGLLMDACFEVN-RVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG 243 (407)
Q Consensus 185 ~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 243 (407)
+.+.|++++..- ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 334455544332 22333444333 44456666666655544444444444444444443
No 313
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=32.54 E-value=64 Score=20.50 Aligned_cols=32 Identities=9% Similarity=0.024 Sum_probs=16.1
Q ss_pred hCCccCCcchHHHHHHHHHHcCCHHHHHHHHH
Q 015416 40 LGGVVSDGVVYGSLMKGYFMKGMEEEAMECYN 71 (407)
Q Consensus 40 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 71 (407)
.|+.||++.||+-+..++-+..-...++.+..
T Consensus 29 IPnLPpgVnTW~qI~el~qkk~i~~~~m~iik 60 (81)
T 2ko4_A 29 IPNIPPNINTWQQVTALAQQKLLTPQDMEAAK 60 (81)
T ss_dssp SSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHH
T ss_pred CCCCCCCcchHHHHHHHHHcCCCCHHHHHHHH
Confidence 34556666666665555444333344444433
No 314
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=31.74 E-value=1.6e+02 Score=22.10 Aligned_cols=92 Identities=13% Similarity=0.019 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 015416 192 PDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMK 271 (407)
Q Consensus 192 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 271 (407)
++...-...+.++...+..+ +...+..+.. .++..+-...+.++...+.. .+...+..+.. .++..+-...+.
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~--d~~~~vr~~A~~ 160 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK--DEDGWVRQSAAD 160 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT--CSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc--CCCHHHHHHHHH
Confidence 34444444555555555432 2222222322 33444444445555554442 22223333322 234444444455
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 015416 272 ALSDGGKLDEILEIVGGILD 291 (407)
Q Consensus 272 ~~~~~g~~~~A~~~~~~~~~ 291 (407)
++...|. .++...+..+..
T Consensus 161 aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 161 ALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp HHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHhCc-hhHHHHHHHHHh
Confidence 5544443 234444444443
No 315
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=31.56 E-value=1.4e+02 Score=21.13 Aligned_cols=22 Identities=14% Similarity=0.363 Sum_probs=10.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 015416 129 VMADGYCGQGRFKDAIEVFRKM 150 (407)
Q Consensus 129 ~l~~~~~~~g~~~~A~~~~~~~ 150 (407)
.++.-|...|+.++|...++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444444444444444444444
No 316
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=31.28 E-value=1.9e+02 Score=22.63 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=10.1
Q ss_pred CChHHHHHHHHHHHHCCCCC
Q 015416 208 NRVDDGATYFRKMVDSGLRP 227 (407)
Q Consensus 208 g~~~~a~~~~~~~~~~~~~~ 227 (407)
.+.+.|+-++-+|++.|-.|
T Consensus 49 SDpDAALywLaRMl~~GEDp 68 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAGEDP 68 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCCH
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 44555555555555554433
No 317
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=31.08 E-value=2.6e+02 Score=24.99 Aligned_cols=66 Identities=12% Similarity=0.128 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--------HHHH-HHHHHHHHhcCCHHHHHHHHHHHHhc-CCC
Q 015416 196 TYGLLMDACFEVNRVDDGATYFRKMVDSGLRPN--------LAVY-NRLVGKLVQVGMLDEAKSFFDIMVKK-LKM 261 (407)
Q Consensus 196 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~ 261 (407)
..+.+...|.+.++...+..+++.+...+..|+ ..+| .-+++.+...+++.+|.+.+..+... .+.
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 455666777788888888888777765544222 1233 34566677788888888888777765 443
No 318
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=31.02 E-value=45 Score=19.89 Aligned_cols=22 Identities=9% Similarity=-0.032 Sum_probs=13.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCCc
Q 015416 277 GKLDEILEIVGGILDDGGIEFS 298 (407)
Q Consensus 277 g~~~~A~~~~~~~~~~~~~~~~ 298 (407)
-+++.|...|.++...+.+||+
T Consensus 34 Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 34 WDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp TCHHHHHHHHHHHHHTTCSCGG
T ss_pred CCHHHHHHHHHHHHHcCCCCHH
Confidence 3566777777766665555554
No 319
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=30.75 E-value=1.7e+02 Score=22.00 Aligned_cols=17 Identities=18% Similarity=0.071 Sum_probs=7.1
Q ss_pred CHHHHHHHHHHHHhcCC
Q 015416 228 NLAVYNRLVGKLVQVGM 244 (407)
Q Consensus 228 ~~~~~~~l~~~~~~~g~ 244 (407)
+..+-...+.++...|.
T Consensus 151 ~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 151 DGWVRQSAADALGEIGG 167 (201)
T ss_dssp SHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 33444444444444443
No 320
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=30.72 E-value=4.1e+02 Score=26.36 Aligned_cols=90 Identities=6% Similarity=0.024 Sum_probs=45.1
Q ss_pred HHHHHHcCC---HHHHHHHHHHHHhCCC--CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHH
Q 015416 54 MKGYFMKGM---EEEAMECYNEAVGENS--SVKMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFN 128 (407)
Q Consensus 54 ~~~~~~~g~---~~~A~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (407)
+...+..|. .+.|.+.|+....... .++|+.. ..+...-.+.|..++-..+++...... +..--.
T Consensus 693 l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~--------~~~ek~ 762 (909)
T 4fke_A 693 ISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ--------LVNEAD 762 (909)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC--------SHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC--------CHHHHH
Confidence 333444444 3456666766654321 1334322 223333334455555455555554432 222345
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhC
Q 015416 129 VMADGYCGQGRFKDAIEVFRKMGEY 153 (407)
Q Consensus 129 ~l~~~~~~~g~~~~A~~~~~~~~~~ 153 (407)
.++.+++...+.....++++.....
T Consensus 763 ~ll~aL~~~~d~~~l~~~L~~~l~~ 787 (909)
T 4fke_A 763 KLRSALACSNEVWLLNRYLGYTLNP 787 (909)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHTTCT
T ss_pred HHHHHhCCCCCHHHHHHHHHHHhCC
Confidence 5666666667777667777666553
No 321
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=30.43 E-value=1.1e+02 Score=20.21 Aligned_cols=38 Identities=13% Similarity=0.110 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHH
Q 015416 98 GKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAI 144 (407)
Q Consensus 98 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 144 (407)
...+.|.++++.+...|+. +|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~---------Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQ---------ALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTT---------HHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChH---------HHHHHHHHHHHcCcHHHHH
Confidence 3567777777777776543 6777777776666655443
No 322
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=30.06 E-value=2.2e+02 Score=22.93 Aligned_cols=177 Identities=11% Similarity=-0.037 Sum_probs=79.6
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHhcCCH----HHHHHHHHHHHhcCCCCCccc
Q 015416 46 DGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSVKMSAVANNSVLDALCNNGKF----DEALKLFDRMKNEHNPPKRLA 121 (407)
Q Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~A~~~~~~~~~~~~~~~~~~ 121 (407)
+...-...+.++...|.. .+...+..++.. ++.......+.++...|.. .....++........
T Consensus 36 ~~~vr~~A~~~L~~~~~~-~~~~~L~~~l~d-----~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~------ 103 (280)
T 1oyz_A 36 NSLKRISSARVLQLRGGQ-DAVRLAIEFCSD-----KNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDK------ 103 (280)
T ss_dssp SHHHHHHHHHHHHHHCCH-HHHHHHHHHHTC-----SSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCS------
T ss_pred CHHHHHHHHHHHHccCCc-hHHHHHHHHHcC-----CCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCC------
Confidence 444445555666666643 344555555532 2344445555566665532 222333332111111
Q ss_pred cccchHHHHHHHHHhcCC-----HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 015416 122 VNLGSFNVMADGYCGQGR-----FKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYT 196 (407)
Q Consensus 122 ~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 196 (407)
+..+....+.++...+. ...+...+..+.. .++..+-...+.++...|+.. +...+..+.. .++...
T Consensus 104 -~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~v 175 (280)
T 1oyz_A 104 -SACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDV 175 (280)
T ss_dssp -CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHH
T ss_pred -CHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHH
Confidence 33344444444444431 2344444444443 255555555556666655432 3344444443 234444
Q ss_pred HHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 015416 197 YGLLMDACFEVN-RVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGML 245 (407)
Q Consensus 197 ~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 245 (407)
-...+.++...+ ....+...+..+.. .++..+-...+.++...|+.
T Consensus 176 r~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~ 222 (280)
T 1oyz_A 176 RNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDK 222 (280)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCH
Confidence 444444444443 12334444444433 34555555556666666643
No 323
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=29.76 E-value=2e+02 Score=22.48 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=18.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015416 172 NGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACF 205 (407)
Q Consensus 172 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 205 (407)
-.+.+.|+-.+-+|++.|-.|.-..-..++.+.-
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsE 81 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLISACE 81 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3556666666666666655444444444444443
No 324
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=29.56 E-value=92 Score=23.10 Aligned_cols=57 Identities=12% Similarity=0.216 Sum_probs=25.9
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCC
Q 015416 187 DKGVNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDS--GLRPNLAVYNRLVGKLVQVGM 244 (407)
Q Consensus 187 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 244 (407)
+.|++++.. -..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-
T Consensus 26 ~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 26 QGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 344444332 223344444444444555555555544 333444444444455555443
No 325
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=29.24 E-value=1.5e+02 Score=22.00 Aligned_cols=57 Identities=14% Similarity=0.151 Sum_probs=31.5
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHhcCCH
Q 015416 222 DSGLRPNLAVYNRLVGKLVQVGMLDEAKSFFDIMVKK---LKMDDASYKFMMKALSDGGKL 279 (407)
Q Consensus 222 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~ 279 (407)
+.|++++.. -..++..+...+..-.|.++++.+.+. ...+..|...-+..+...|-+
T Consensus 26 ~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 26 QGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 456665443 333444555555566666666666553 234556666666666666643
No 326
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=27.83 E-value=2.5e+02 Score=22.87 Aligned_cols=40 Identities=15% Similarity=0.074 Sum_probs=20.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 015416 130 MADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQL 169 (407)
Q Consensus 130 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 169 (407)
++...-+.+++++..+.++.+...+...+..-.|.|-.+|
T Consensus 37 ~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAY 76 (261)
T 3ubw_A 37 QAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAY 76 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHH
Confidence 3444455566666666666665555445544444444333
No 327
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=27.63 E-value=3.3e+02 Score=24.23 Aligned_cols=28 Identities=14% Similarity=0.023 Sum_probs=15.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015416 157 PDTLSFNNLIDQLCKNGMLAEAEELYGEMS 186 (407)
Q Consensus 157 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 186 (407)
.+......++.. ..|+...++.+++.+.
T Consensus 192 i~~~al~~L~~~--~~Gd~R~lln~Le~a~ 219 (447)
T 3pvs_A 192 LPDETRRAIAEL--VNGDARRALNTLEMMA 219 (447)
T ss_dssp CCHHHHHHHHHH--HCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--CCCCHHHHHHHHHHHH
Confidence 344445544444 3566777766666654
No 328
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=26.20 E-value=2.3e+02 Score=21.93 Aligned_cols=18 Identities=6% Similarity=-0.051 Sum_probs=9.6
Q ss_pred cCCHHHHHHHHHHHhhCC
Q 015416 137 QGRFKDAIEVFRKMGEYR 154 (407)
Q Consensus 137 ~g~~~~A~~~~~~~~~~~ 154 (407)
..+.+.|+-++-+|++.|
T Consensus 20 GSDpDAAly~LaRMl~~G 37 (201)
T 3bge_A 20 GSAPDAALYWYARILTAG 37 (201)
T ss_dssp TTCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHcC
Confidence 345555555555555554
No 329
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.79 E-value=1.1e+02 Score=21.59 Aligned_cols=37 Identities=19% Similarity=0.092 Sum_probs=15.4
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 015416 171 KNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEV 207 (407)
Q Consensus 171 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 207 (407)
..+..-.|.++++.+.+.+...+..|....+..+...
T Consensus 22 ~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 58 (131)
T 2o03_A 22 TLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASS 58 (131)
T ss_dssp HCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTT
T ss_pred hCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 3333444444444444443333444433344444333
No 330
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=25.56 E-value=1.9e+02 Score=20.92 Aligned_cols=44 Identities=5% Similarity=0.059 Sum_probs=20.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 015416 200 LMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG 243 (407)
Q Consensus 200 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 243 (407)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33344444444455555555554443444444444444444444
No 331
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.26 E-value=3.4e+02 Score=23.60 Aligned_cols=54 Identities=4% Similarity=-0.023 Sum_probs=25.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCc--HHHHHHHHHHHhhcCcHHHHHH
Q 015416 267 KFMMKALSDGGKLDEILEIVGGILDD----GGIEFS--EELQEFVKGELSKEGREEEVVK 320 (407)
Q Consensus 267 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~g~~~~A~~ 320 (407)
..+++.|...|+.+.|..++++.... .+..|. ...|...+..|...+++..+..
T Consensus 131 ~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~ 190 (393)
T 4b4t_O 131 SEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYY 190 (393)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34445555566666666666555421 222322 2234444445555565555443
No 332
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=25.15 E-value=3e+02 Score=23.72 Aligned_cols=148 Identities=11% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 015416 159 TLSFNNLIDQLCKNGMLAEAEELYGEMSDKG-VNPDEYTYGLLMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVG 237 (407)
Q Consensus 159 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 237 (407)
......++.-|...|+.++|...++++.... ..|...........=.+....+.+-.++..+...++-+.......+..
T Consensus 12 ~k~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~ 91 (364)
T 3l6a_A 12 LKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLN 91 (364)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_pred HHHhcCCHH----HHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhc
Q 015416 238 KLVQVGMLD----EAKSFFDIMVK-KLKMDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKE 312 (407)
Q Consensus 238 ~~~~~g~~~----~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 312 (407)
.+....+.. .|..++..+.. .+..+..+...+...+...+-..-...+++.+.+..| ...+...+.+.
T Consensus 92 lle~l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~l~~G~~~~l~l~vl~~~~k~~G-------~~~l~~l~~~s 164 (364)
T 3l6a_A 92 VLDQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLESGTHFPLFLLCLQQLAKLQD-------REWLTELFQQS 164 (364)
T ss_dssp HHHTHHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHGGGTTTTHHHHHHHHHHHHSC-------HHHHHHHHHHH
T ss_pred HHhhChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHHhcccchHHHHHHHHHHHHHhcC-------HHHHHHHHHHc
Q ss_pred C
Q 015416 313 G 313 (407)
Q Consensus 313 g 313 (407)
|
T Consensus 165 g 165 (364)
T 3l6a_A 165 K 165 (364)
T ss_dssp T
T ss_pred C
No 333
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=25.10 E-value=2.4e+02 Score=21.75 Aligned_cols=24 Identities=8% Similarity=-0.089 Sum_probs=14.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCC
Q 015416 54 MKGYFMKGMEEEAMECYNEAVGEN 77 (407)
Q Consensus 54 ~~~~~~~g~~~~A~~~~~~~~~~~ 77 (407)
+...+..|+.+....+++.....+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344456677777777776555443
No 334
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=24.73 E-value=1.3e+02 Score=23.20 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=15.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC
Q 015416 90 VLDALCNNGKFDEALKLFDRMKNEH 114 (407)
Q Consensus 90 l~~~~~~~~~~~~A~~~~~~~~~~~ 114 (407)
.+..|.+.|.+++|.++|++.....
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~~ 147 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGDP 147 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---
T ss_pred HHHHHHHccchHHHHHHHHHHhcCC
Confidence 3445777777777777777765543
No 335
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=24.62 E-value=1.5e+02 Score=20.79 Aligned_cols=45 Identities=9% Similarity=0.149 Sum_probs=23.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 015416 200 LMDACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVGM 244 (407)
Q Consensus 200 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 244 (407)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 344444444455566666666655444455555555555555443
No 336
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=23.84 E-value=3.5e+02 Score=23.26 Aligned_cols=73 Identities=12% Similarity=0.207 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCCcHHHHHH
Q 015416 231 VYNRLVGKLVQVGMLDEAKSFFDIMVKKLKMDDASYKFMMKALSDGGK--LDEILEIVGGILDDGGIEFSEELQEF 304 (407)
Q Consensus 231 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~ 304 (407)
....++.-|...|+.++|...++.+....--...+...+..++-+.++ .+...+++..+... ++-........
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~-glls~~q~~~G 293 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKS-STITIDQMKRG 293 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT-TCSCHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC-CCCCHHHHHHH
Confidence 457788888889999999999988864211122334444444444333 35577777777765 34444433333
No 337
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=23.36 E-value=4.7e+02 Score=27.31 Aligned_cols=77 Identities=12% Similarity=0.215 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCcHHHHHHHHH
Q 015416 245 LDEAKSFFDIMVKKLK-MDDASYKFMMKALSDGGKLDEILEIVGGILDDGGIEFSEELQEFVKGELSKEGREEEVVKLME 323 (407)
Q Consensus 245 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 323 (407)
.+.-.+.|.++.+-.. .|.......+..-...+++-.|++++.++.+. .+..+.|..++..+...| |+....+.+
T Consensus 1265 ~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~---k~~~~~~~~~~~~~~~l~-w~h~~~~~~ 1340 (1354)
T 3lxu_X 1265 LAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE---KRTRDHFVELAAINGALG-HEHIRTVIN 1340 (1354)
T ss_dssp HHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH---TCCHHHHHHHHHHHHHHS-CHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHcC-CHHHHHHHH
Confidence 3445566666666222 23333333344444688899999999999886 477888888877776665 333344444
Q ss_pred HH
Q 015416 324 KK 325 (407)
Q Consensus 324 ~~ 325 (407)
++
T Consensus 1341 ~~ 1342 (1354)
T 3lxu_X 1341 RM 1342 (1354)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 338
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=23.13 E-value=3e+02 Score=22.20 Aligned_cols=55 Identities=13% Similarity=0.005 Sum_probs=27.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHH
Q 015416 130 MADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNNLIDQLCK-NGMLAEAEELYGE 184 (407)
Q Consensus 130 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~ 184 (407)
++...-+.++++++....+.+...+...+..-.|.|-.+|-. .|....+++++..
T Consensus 10 ~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiiss 65 (248)
T 3uzd_A 10 KARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISS 65 (248)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 344555566666666666666665555555544444444422 2333344444433
No 339
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=22.94 E-value=1.6e+02 Score=23.33 Aligned_cols=57 Identities=18% Similarity=0.139 Sum_probs=35.7
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHhhCCccCCcc-------hHHHHHHHHH--HcCCHHHHHHHHHHHH
Q 015416 16 LMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGV-------VYGSLMKGYF--MKGMEEEAMECYNEAV 74 (407)
Q Consensus 16 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~--~~g~~~~A~~~~~~~~ 74 (407)
.+...++.|+.+....+++.+.+. +..++.. -++.|..+.. +.|+.+-+..+++...
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~--~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTH--KKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHH--TCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhc--CCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 344556789999988888887776 5444432 2334444432 5577777777766543
No 340
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=22.75 E-value=1.4e+02 Score=21.31 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=18.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 015416 202 DACFEVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG 243 (407)
Q Consensus 202 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 243 (407)
..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 21 ~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 21 AALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 333333334445555555554443344444444444444443
No 341
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=22.72 E-value=1.7e+02 Score=19.17 Aligned_cols=30 Identities=13% Similarity=0.343 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 015416 245 LDEAKSFFDIMVKKLKMDDASYKFMMKALS 274 (407)
Q Consensus 245 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 274 (407)
++.|+.+++++......++..|...+..+.
T Consensus 10 ~~~A~~YvnkVK~rF~~~p~~Y~~FL~IL~ 39 (89)
T 1g1e_B 10 FNHAINYVNKIKNRFQGQPDIYKAFLEILH 39 (89)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 355666666666655556666655555443
No 342
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=22.70 E-value=99 Score=22.16 Aligned_cols=45 Identities=16% Similarity=0.065 Sum_probs=22.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 015416 165 LIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNR 209 (407)
Q Consensus 165 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 209 (407)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 344444444455566666666555444455554445555544443
No 343
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=22.30 E-value=5.8e+02 Score=25.28 Aligned_cols=162 Identities=9% Similarity=0.020 Sum_probs=89.1
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 015416 88 NSVLDALCNNGK---FDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTLSFNN 164 (407)
Q Consensus 88 ~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 164 (407)
..++...+..|. .+.|.+.|+........ ..+ .+.....+...-.+.|..+.-..+++..... .+..--..
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~-~~i--~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ 763 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPEN-NPI--HPNLRSTIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADK 763 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTS-CCS--CTTTHHHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCC-CcC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHH
Confidence 345555556665 56788899887764211 112 2223334444445667766666677777663 34555567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHH---CCCCCCHHHHHHHHHHH
Q 015416 165 LIDQLCKNGMLAEAEELYGEMSDKG-VNPDEYTYGLLMDACFEV-NRVDDGATYFRKMVD---SGLRPNLAVYNRLVGKL 239 (407)
Q Consensus 165 l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~ 239 (407)
++.+++...+.....++++..+... +++. .... ++.+.... ...+.+.+.+..=.+ ..+..+...+..++...
T Consensus 764 ll~aL~~~~d~~~l~~~L~~~l~~~~ir~q-d~~~-~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~ 841 (909)
T 4fke_A 764 LRSALACSNEVWLLNRYLGYTLNPDLIRKQ-DATS-TINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGV 841 (909)
T ss_dssp HHHHHTTCCCHHHHHHHHHHTTCTTTSCGG-GHHH-HHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHhCCCCCchh-hHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 7888888888888888888776533 3332 2222 33333322 223455555543221 11222333566677777
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 015416 240 VQVGMLDEAKSFFDIMVK 257 (407)
Q Consensus 240 ~~~g~~~~A~~~~~~~~~ 257 (407)
...-.-++-.+-++...+
T Consensus 842 ~~~~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 842 TRRFSSEFELQQLEQFKK 859 (909)
T ss_dssp HTTCCSHHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHh
Confidence 665555555555565555
No 344
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=21.46 E-value=2.3e+02 Score=20.34 Aligned_cols=60 Identities=10% Similarity=0.069 Sum_probs=40.7
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 015416 149 KMGEYRCSPDTLSFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPDEYTYGLLMDACFEVNRV 210 (407)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 210 (407)
.+.+.|+.++..- ..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 4455676665543 34455555556 678999999998877667777777777777776653
No 345
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=21.46 E-value=1.5e+02 Score=18.10 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=10.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC
Q 015416 200 LMDACFEVNRVDDGATYFRKMVDSG 224 (407)
Q Consensus 200 l~~~~~~~g~~~~a~~~~~~~~~~~ 224 (407)
++..++...-+++++..+.++.+.|
T Consensus 8 ll~l~Aed~AieDaiy~L~~aL~~g 32 (65)
T 2f6m_A 8 LYNLVAQDYALTDTIEALSRMLHRG 32 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3333333333444444444444433
No 346
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.00 E-value=1.6e+02 Score=18.36 Aligned_cols=33 Identities=18% Similarity=0.411 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 015416 211 DDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG 243 (407)
Q Consensus 211 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 243 (407)
-.+.++++.+.+.+...+..|....+..+...|
T Consensus 34 ~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 34 VSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp BCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344555555544433334444444444444443
No 347
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=20.90 E-value=1.6e+02 Score=25.08 Aligned_cols=27 Identities=11% Similarity=0.325 Sum_probs=22.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 015416 126 SFNVMADGYCGQGRFKDAIEVFRKMGE 152 (407)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 152 (407)
-...++.-|...|+.++|...++++..
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~ 39 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELAS 39 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 456788889999999999988888753
No 348
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=20.62 E-value=4.5e+02 Score=23.33 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=21.1
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 015416 206 EVNRVDDGATYFRKMVDSGLRPNLAVYNRLVGKLVQVG 243 (407)
Q Consensus 206 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 243 (407)
+.++.+.|+.++.+|++.|..|....-..+..+.-..|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 34566777777777777665554433444444444444
No 349
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=20.50 E-value=2.7e+02 Score=20.78 Aligned_cols=66 Identities=12% Similarity=0.032 Sum_probs=30.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHH-hcCCHHHHHHHHHHHhhCCCCCC
Q 015416 91 LDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYC-GQGRFKDAIEVFRKMGEYRCSPD 158 (407)
Q Consensus 91 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~ 158 (407)
+...+..|+.+.-.++.+.+++.|..+.... ..-++.|..++. ...+.....++.+.+++.|..++
T Consensus 42 Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d--~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 42 LYDVLRNNNDEARYKISMFLINKGADIKSRT--KEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTCCSSCCC--TTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHcCCcchHHHHHHHHHHCCCCCCCCC--CCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC
Confidence 3344455666555566666677666553221 111222222221 12233444556666666665444
No 350
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=20.03 E-value=2.4e+02 Score=22.82 Aligned_cols=173 Identities=9% Similarity=-0.060 Sum_probs=0.0
Q ss_pred CCcCCCCcCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhhCCccCCcchHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 015416 1 MFVKGFVADPVVYSYLMLGFVRDGDSDGVFRLFEELKEKLGGVVSDGVVYGSLMKGYFMKGMEEEAMECYNEAVGENSSV 80 (407)
Q Consensus 1 M~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 80 (407)
+.+.|..++...-.+.+...+..|+.+-+.-+++. .. .+......-.+.+...+..|+.+-+..+++.-...+
T Consensus 50 Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~--- 122 (285)
T 3kea_A 50 LLNAGALKNLLENEFPLHQAATLEDTKIVKILLFS--GL--DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM--- 122 (285)
T ss_dssp HHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHT--TC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGG---
T ss_pred HHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC--CC--CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC---
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 015416 81 KMSAVANNSVLDALCNNGKFDEALKLFDRMKNEHNPPKRLAVNLGSFNVMADGYCGQGRFKDAIEVFRKMGEYRCSPDTL 160 (407)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 160 (407)
..+...+...+...+..|+.+ +++.+.+.+..+. +...-.+.+...+..|+.+-+.-+++.-.... ..+..
T Consensus 123 ~~~~~g~~t~L~~A~~~~~~~----~v~~Ll~~g~~~~----~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n-~~~~~ 193 (285)
T 3kea_A 123 FYGKTGWKTSFYHAVMLNDVS----IVSYFLSEIPSTF----DLAILLSCIHITIKNGHVDMMILLLDYMTSTN-TNNSL 193 (285)
T ss_dssp GCSSSGGGSHHHHHHHTTCHH----HHHHHHTTSCTTC----CCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-TTCCC
T ss_pred ccCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCccc----cccCCccHHHHHHHcChHHHHHHHHHcCCCCC-cccCC
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 015416 161 SFNNLIDQLCKNGMLAEAEELYGEMSDKGVNPD 193 (407)
Q Consensus 161 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 193 (407)
-++..+...+..|+ .++.+.+++.|..++
T Consensus 194 g~t~~L~~A~~~~~----~~~v~~Ll~~gad~~ 222 (285)
T 3kea_A 194 LFIPDIKLAIDNKD----IEMLQALFKYDINIY 222 (285)
T ss_dssp BCCTTHHHHHHHTC----HHHHHHHTTSCBCST
T ss_pred CCChHHHHHHHcCC----HHHHHHHHHcCCCCC
Done!