Query 015418
Match_columns 407
No_of_seqs 182 out of 551
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 06:07:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015418.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015418hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1327 Copine [Signal transdu 100.0 2.6E-77 5.5E-82 618.4 23.7 254 70-339 255-524 (529)
2 cd01459 vWA_copine_like VWA Co 100.0 5.5E-71 1.2E-75 532.5 20.7 223 82-329 19-254 (254)
3 PF07002 Copine: Copine; Inte 100.0 6E-48 1.3E-52 345.3 14.8 137 125-273 1-146 (146)
4 PF10138 vWA-TerF-like: vWA fo 100.0 2.8E-34 6E-39 268.9 17.8 197 101-338 2-200 (200)
5 cd01457 vWA_ORF176_type VWA OR 99.8 8.8E-20 1.9E-24 167.6 12.1 169 102-306 4-187 (199)
6 smart00327 VWA von Willebrand 98.9 2.3E-08 5E-13 86.6 11.3 150 101-289 2-160 (177)
7 cd01461 vWA_interalpha_trypsin 98.8 6.9E-08 1.5E-12 84.6 12.0 147 101-285 3-150 (171)
8 cd01463 vWA_VGCC_like VWA Volt 98.7 1.8E-07 3.9E-12 85.3 11.4 147 101-284 14-176 (190)
9 cd00198 vWFA Von Willebrand fa 98.7 4.4E-07 9.5E-12 75.9 12.5 146 102-285 2-153 (161)
10 cd01471 vWA_micronemal_protein 98.6 3.4E-07 7.4E-12 82.6 11.9 170 101-304 1-179 (186)
11 cd01464 vWA_subfamily VWA subf 98.6 1.7E-07 3.7E-12 84.4 9.5 144 100-285 3-159 (176)
12 cd01450 vWFA_subfamily_ECM Von 98.5 9.3E-07 2E-11 75.8 9.8 147 102-285 2-153 (161)
13 cd01465 vWA_subgroup VWA subgr 98.5 2.4E-06 5.2E-11 75.0 11.9 147 101-284 1-150 (170)
14 PF13519 VWA_2: von Willebrand 98.4 1.9E-06 4E-11 74.3 10.5 145 102-283 1-147 (172)
15 cd01466 vWA_C3HC4_type VWA C3H 98.4 1.5E-06 3.4E-11 77.0 10.2 140 102-284 2-144 (155)
16 cd01454 vWA_norD_type norD typ 98.4 5.3E-06 1.2E-10 74.4 13.2 150 102-276 2-154 (174)
17 cd01456 vWA_ywmD_type VWA ywmD 98.3 3.8E-06 8.3E-11 77.6 10.1 160 101-283 21-188 (206)
18 cd01473 vWA_CTRP CTRP for CS 98.2 5.2E-05 1.1E-09 70.4 14.3 151 102-285 2-160 (192)
19 cd01482 vWA_collagen_alphaI-XI 98.2 2.3E-05 5E-10 69.8 11.3 142 102-285 2-151 (164)
20 cd01470 vWA_complement_factors 98.1 2.3E-05 5E-10 71.8 11.2 156 101-285 1-176 (198)
21 TIGR03788 marine_srt_targ mari 98.1 1.7E-05 3.7E-10 85.1 11.9 145 101-284 272-418 (596)
22 cd01472 vWA_collagen von Wille 98.1 2.8E-05 6E-10 68.9 11.2 141 102-285 2-151 (164)
23 cd01467 vWA_BatA_type VWA BatA 98.1 3.8E-05 8.2E-10 68.4 11.9 140 101-274 3-142 (180)
24 PF13768 VWA_3: von Willebrand 98.1 2.5E-05 5.4E-10 68.4 9.6 143 102-284 2-146 (155)
25 cd01476 VWA_integrin_invertebr 98.1 8.1E-05 1.8E-09 65.4 12.6 135 101-276 1-143 (163)
26 cd01480 vWA_collagen_alpha_1-V 97.9 9.6E-05 2.1E-09 67.5 10.8 146 101-284 3-160 (186)
27 cd01462 VWA_YIEM_type VWA YIEM 97.9 0.00038 8.3E-09 60.7 13.4 133 102-275 2-135 (152)
28 PF00092 VWA: von Willebrand f 97.8 0.00014 3.1E-09 63.4 9.7 148 102-284 1-153 (178)
29 cd01474 vWA_ATR ATR (Anthrax T 97.8 0.00016 3.4E-09 65.8 10.2 146 101-285 5-155 (185)
30 cd01453 vWA_transcription_fact 97.7 0.00041 8.8E-09 64.0 11.7 139 101-275 4-147 (183)
31 PTZ00441 sporozoite surface pr 97.7 0.00041 8.9E-09 74.9 13.2 141 101-275 43-189 (576)
32 cd01475 vWA_Matrilin VWA_Matri 97.7 0.00039 8.4E-09 65.4 11.2 141 101-284 3-155 (224)
33 cd01451 vWA_Magnesium_chelatas 97.7 0.00078 1.7E-08 61.0 12.5 146 103-284 3-154 (178)
34 PRK13685 hypothetical protein; 97.6 0.0005 1.1E-08 68.7 11.9 143 101-275 89-239 (326)
35 PF09967 DUF2201: VWA-like dom 97.6 0.00028 6E-09 61.9 8.3 121 103-283 1-125 (126)
36 cd01477 vWA_F09G8-8_type VWA F 97.6 0.001 2.2E-08 62.2 11.9 147 101-283 20-181 (193)
37 cd01469 vWA_integrins_alpha_su 97.5 0.0011 2.4E-08 60.2 11.3 135 101-275 1-143 (177)
38 cd01460 vWA_midasin VWA_Midasi 97.5 0.0013 2.9E-08 65.0 12.6 138 101-275 61-205 (266)
39 cd01458 vWA_ku Ku70/Ku80 N-ter 97.2 0.01 2.2E-07 55.6 14.3 162 102-283 3-183 (218)
40 PRK13406 bchD magnesium chelat 97.2 0.0047 1E-07 67.2 13.3 159 101-290 402-563 (584)
41 TIGR02031 BchD-ChlD magnesium 97.2 0.0055 1.2E-07 66.5 13.8 159 101-289 408-575 (589)
42 cd01452 VWA_26S_proteasome_sub 97.1 0.0029 6.2E-08 59.6 9.7 162 102-302 5-174 (187)
43 cd01481 vWA_collagen_alpha3-VI 97.1 0.0068 1.5E-07 55.0 11.3 140 102-284 2-153 (165)
44 TIGR03436 acidobact_VWFA VWFA- 97.0 0.0091 2E-07 58.2 11.9 136 98-274 52-204 (296)
45 cd01455 vWA_F11C1-5a_type Von 96.9 0.0059 1.3E-07 57.9 9.5 157 102-283 2-161 (191)
46 TIGR02442 Cob-chelat-sub cobal 96.7 0.029 6.3E-07 61.4 14.0 141 101-275 466-611 (633)
47 PF05762 VWA_CoxE: VWA domain 96.5 0.027 5.8E-07 53.6 11.2 121 101-261 58-179 (222)
48 TIGR00868 hCaCC calcium-activa 96.1 0.041 9E-07 62.4 11.3 142 102-283 306-449 (863)
49 PRK10997 yieM hypothetical pro 96.1 0.11 2.3E-06 55.7 13.6 143 101-284 324-468 (487)
50 COG2425 Uncharacterized protei 91.6 1.9 4.2E-05 45.8 11.5 130 102-271 274-405 (437)
51 COG1240 ChlD Mg-chelatase subu 91.6 3.1 6.7E-05 41.6 12.1 145 97-276 75-224 (261)
52 COG4245 TerY Uncharacterized p 85.5 5.5 0.00012 38.4 8.9 141 101-284 4-159 (207)
53 PF03731 Ku_N: Ku70/Ku80 N-ter 84.8 13 0.00029 34.6 11.2 157 103-281 2-182 (224)
54 PF11775 CobT_C: Cobalamin bio 67.1 16 0.00035 35.7 6.4 52 221-274 133-187 (219)
55 PF04131 NanE: Putative N-acet 65.1 38 0.00083 32.6 8.4 97 85-237 53-155 (192)
56 KOG2353 L-type voltage-depende 61.2 81 0.0017 37.7 11.7 147 101-281 226-382 (1104)
57 TIGR00578 ku70 ATP-dependent D 57.8 1.2E+02 0.0025 33.6 11.7 162 102-283 12-193 (584)
58 COG3864 Uncharacterized protei 52.1 58 0.0013 34.0 7.6 110 101-274 262-374 (396)
59 cd03313 enolase Enolase: Enola 50.7 94 0.002 32.6 9.2 64 82-151 212-278 (408)
60 KOG4465 Uncharacterized conser 47.2 2.2E+02 0.0049 30.4 11.1 142 101-281 428-570 (598)
61 PF00113 Enolase_C: Enolase, C 47.0 38 0.00083 34.3 5.5 150 79-270 76-234 (295)
62 COG4548 NorD Nitric oxide redu 45.8 53 0.0011 36.4 6.5 163 101-299 447-619 (637)
63 PF07466 DUF1517: Protein of u 44.8 33 0.00071 34.7 4.7 15 221-235 216-232 (289)
64 PF06415 iPGM_N: BPG-independe 44.3 43 0.00092 32.8 5.2 57 207-274 13-72 (223)
65 TIGR01651 CobT cobaltochelatas 43.7 48 0.001 37.0 5.9 64 208-275 500-568 (600)
66 PF02601 Exonuc_VII_L: Exonucl 40.3 91 0.002 31.0 7.0 86 182-279 26-122 (319)
67 PLN00191 enolase 39.9 2.7E+02 0.0058 30.1 10.7 70 81-151 241-312 (457)
68 cd01468 trunk_domain trunk dom 38.4 2.5E+02 0.0055 26.8 9.4 161 102-283 5-210 (239)
69 COG1488 PncB Nicotinic acid ph 38.1 1.3E+02 0.0028 31.9 7.9 62 195-275 264-325 (405)
70 PF04811 Sec23_trunk: Sec23/Se 37.1 3.7E+02 0.0081 25.5 12.2 163 102-283 5-212 (243)
71 PTZ00081 enolase; Provisional 34.6 3.5E+02 0.0076 29.0 10.6 67 81-151 226-298 (439)
72 TIGR02836 spore_IV_A stage IV 33.3 44 0.00095 36.3 3.6 90 225-326 146-237 (492)
73 PRK00286 xseA exodeoxyribonucl 32.3 1.1E+02 0.0024 32.0 6.4 65 208-285 147-213 (438)
74 PRK00077 eno enolase; Provisio 30.4 4.7E+02 0.01 27.7 10.6 62 83-151 216-278 (425)
75 TIGR00696 wecB_tagA_cpsF bacte 29.5 4.5E+02 0.0097 24.5 9.3 61 197-275 50-111 (177)
76 COG4573 GatZ Predicted tagatos 27.7 3.8E+02 0.0082 28.5 9.0 108 208-354 28-142 (426)
77 PF02601 Exonuc_VII_L: Exonucl 27.2 2.7E+02 0.0058 27.7 7.8 54 207-273 25-84 (319)
78 COG4822 CbiK Cobalamin biosynt 27.2 2.5E+02 0.0055 28.1 7.3 167 82-274 58-241 (265)
79 PF11443 DUF2828: Domain of un 26.9 3E+02 0.0066 30.4 8.7 113 91-237 332-450 (534)
80 TIGR00237 xseA exodeoxyribonuc 26.5 1.6E+02 0.0036 31.1 6.5 67 207-286 140-209 (432)
81 COG3552 CoxE Protein containin 23.7 4E+02 0.0086 28.5 8.4 104 102-237 220-325 (395)
82 cd01567 NAPRTase_PncB Nicotina 23.4 3.6E+02 0.0079 27.4 8.1 76 183-275 247-328 (343)
83 TIGR02493 PFLA pyruvate format 21.6 5.2E+02 0.011 24.1 8.3 38 196-236 67-106 (235)
84 COG4867 Uncharacterized protei 21.3 3.7E+02 0.0081 29.5 7.8 139 101-274 464-611 (652)
85 PRK00979 tetrahydromethanopter 20.3 1.9E+02 0.0042 29.7 5.3 47 207-267 55-101 (308)
86 cd08550 GlyDH-like Glycerol_de 20.1 2.4E+02 0.0053 28.5 6.1 9 211-219 67-75 (349)
No 1
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-77 Score=618.45 Aligned_cols=254 Identities=46% Similarity=0.700 Sum_probs=237.4
Q ss_pred ccccccccccccccccHHHHHHHHHHcCcceeceEEEEEcCCCCCCCCCCCCCCCCccccCC-CCCHHHHHHHHHhhccc
Q 015418 70 RKLDRRYSRIADDYKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGD-GLNPYEQAISIIGKTLA 148 (407)
Q Consensus 70 ~~~~~~~~~i~~~ys~ld~V~~aL~~~Gle~~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~-~~N~YqqAI~~Ig~vL~ 148 (407)
++++.+++.+.+.|+++++++.++..+|++++||+||||||+||+|++. +.|||||++ .+|+||+||++||++|+
T Consensus 255 k~~k~~g~~~l~~~~~~~~~sfld~i~gg~~lnf~vgIDfTaSNg~p~~----~sSLHyi~p~~~N~Y~~Ai~~vG~~lq 330 (529)
T KOG1327|consen 255 KSYKNSGQLILDRFTSLDQYSFLDYIAGGEQLNFTVGIDFTASNGDPRN----PSSLHYIDPHQPNPYEQAIRSVGETLQ 330 (529)
T ss_pred hcccccceEEehheeehhhhhHHHHHccCceeeeEEEEEEeccCCCCCC----CCcceecCCCCCCHHHHHHHHHhhhhc
Confidence 4567789999999999999999999999999999999999999999865 459999996 78999999999999999
Q ss_pred ccCCCCccceEeecCCCCC---CCC--ccccCCCCCccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcC--
Q 015418 149 VFDEDNLIPCYGFGDASTH---DQD--VFSFYSGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSG-- 221 (407)
Q Consensus 149 ~yD~Dk~iPvfGFGa~~t~---~~~--vFsf~~~~p~c~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~s~-- 221 (407)
.||+||+||||||||+.+. .++ +|+|++.+++|+|++|||+|||+++|+|+|+|||+|+|||++|+++|+++.
T Consensus 331 ~ydsdk~fpa~GFGakip~~~~vs~~f~ln~~~~~~~c~Gi~gVl~aY~~~lp~v~l~GPTnFaPII~~va~~a~~~~~~ 410 (529)
T KOG1327|consen 331 DYDSDKLFPAFGFGAKIPPDGQVSHEFVLNFNPEDPECRGIEGVLEAYRKALPNVQLYGPTNFSPIINHVARIAQQSGNT 410 (529)
T ss_pred ccCCCCccccccccccCCCCcccccceeecCCCCCCccccHHHHHHHHHhhcccccccCCCccHHHHHHHHHHHHHhccC
Confidence 9999999999999999765 344 456678999999999999999999999999999999999999999999886
Q ss_pred -CccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEeccCCCcccccccCCCCCC-------cccc
Q 015418 222 -GQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFDDNIPA-------RAFD 293 (407)
Q Consensus 222 -~~Y~VLLIITDG~Itds~d~~~~~l~~d~~eTidaIv~AS~lPLSII~VGVGd~~F~~M~~LDd~l~~-------R~rD 293 (407)
++||||||||||+||| |++|++|||.||+||||||||||||+||++|++||++.+. |.||
T Consensus 411 ~~qY~VLlIitDG~vTd------------m~~T~~AIV~AS~lPlSIIiVGVGd~df~~M~~lD~d~~~l~~~gr~~~rD 478 (529)
T KOG1327|consen 411 AGQYHVLLIITDGVVTD------------MKETRDAIVSASDLPLSIIIVGVGDADFDMMRELDGDDPKLRSPGRIAERD 478 (529)
T ss_pred CcceEEEEEEeCCcccc------------HHHHHHHHHhhccCCeEEEEEEeCCCCHHHHHHhhcCCccccccccccccc
Confidence 8999999999999997 9999999999999999999999999999999999998776 7899
Q ss_pred ceecccchhhhcccCCcchhHHHHHHHHHHHhHHHHHHHHHhccCC
Q 015418 294 NFQFVNFTEIMSKNHDQTRKETEFALSALMEIPSQYKATIELNILG 339 (407)
Q Consensus 294 NvQFV~f~di~~k~~~~~~~d~~LA~~~L~EIP~Ql~ay~~lgiL~ 339 (407)
|||||+|+||+.++.+.+.++++||+++|+|||+||++||+++.|.
T Consensus 479 ~vQFV~f~~~~~~~~~~~~~~~~lA~~vL~EIP~Q~~~y~~~~~~~ 524 (529)
T KOG1327|consen 479 NVQFVPFRDIMNGAENPSDKEAALALAVLAEIPQQYVQYMRLRGIL 524 (529)
T ss_pred ceEeecHHHHhhcCCcccchhHHHHHHHHHHhhHHHHHHHHhcCCC
Confidence 9999999999998888888999999999999999999999996555
No 2
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=100.00 E-value=5.5e-71 Score=532.49 Aligned_cols=223 Identities=56% Similarity=0.894 Sum_probs=203.6
Q ss_pred ccccHHHHHHHHHHcCcceeceEEEEEcCCCCCCCCCCCCCCCCccccCC-CCCHHHHHHHHHhhcccccCCCCccceEe
Q 015418 82 DYKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGD-GLNPYEQAISIIGKTLAVFDEDNLIPCYG 160 (407)
Q Consensus 82 ~ys~ld~V~~aL~~~Gle~~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~-~~N~YqqAI~~Ig~vL~~yD~Dk~iPvfG 160 (407)
.|+||||+ ++||| +||+||||||+||+|+++ ++||||+++ ..|+||+||++||+||+.||+|++|||||
T Consensus 19 ~~tFldy~-----~~G~~-~nl~vaIDfT~SNg~p~~----~~SLHy~~~~~~N~Yq~aI~~vg~il~~yD~D~~ip~~G 88 (254)
T cd01459 19 QPTFLDYR-----SAGLE-SNLIVAIDFTKSNGWPGE----KRSLHYISPGRLNPYQKAIRIVGEVLQPYDSDKLIPAFG 88 (254)
T ss_pred CCCHHHHH-----hCCCe-eeEEEEEEeCCCCCCCCC----CCCcccCCCCCccHHHHHHHHHHHHHHhcCCCCceeeEe
Confidence 89999999 99999 599999999999999864 689999976 67999999999999999999999999999
Q ss_pred ecCCCCCCCCcccc---CCCCCccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCC--ccEEEEEEeCCcc
Q 015418 161 FGDASTHDQDVFSF---YSGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGG--QYHVLLIIADGQV 235 (407)
Q Consensus 161 FGa~~t~~~~vFsf---~~~~p~c~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~s~~--~Y~VLLIITDG~I 235 (407)
||++.+++..++++ ++++|+|.|++|||++|++++++|+|+|||+|+|||++|+++++++.. +|+||||||||+|
T Consensus 89 FGa~~~~~~~v~~~f~~~~~~p~~~Gi~gvl~aY~~~l~~v~lsGpT~fapvI~~a~~~a~~~~~~~~Y~VLLIiTDG~i 168 (254)
T cd01459 89 FGAIVTKDQSVFSFFPGYSESPECQGFEGVLRAYREALPNVSLSGPTNFAPVIRAAANIAKASNSQSKYHILLIITDGEI 168 (254)
T ss_pred ecccCCCCCccccccCCCCCCCcccCHHHHHHHHHHHhceeeecCcchHHHHHHHHHHHHHHhcCCCceEEEEEECCCCc
Confidence 99998766555444 588999999999999999999999999999999999999999987643 4999999999999
Q ss_pred ccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEeccCCCcccccccCC-------CCCCccccceecccchhhhcccC
Q 015418 236 TRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFDD-------NIPARAFDNFQFVNFTEIMSKNH 308 (407)
Q Consensus 236 tds~d~~~~~l~~d~~eTidaIv~AS~lPLSII~VGVGd~~F~~M~~LDd-------~l~~R~rDNvQFV~f~di~~k~~ 308 (407)
+| +++|+++|++||++||||||||||+++|+.|++||+ +.+.|.|||||||+|++++...
T Consensus 169 ~D------------~~~t~~aIv~AS~~PlSIiiVGVGd~~F~~M~~LD~d~~l~~~~~~~~~rDnvqFV~f~~~~~~~- 235 (254)
T cd01459 169 TD------------MNETIKAIVEASKYPLSIVIVGVGDGPFDAMERLDDDDGLESSDGRIATRDIVQFVPFTEFMSNA- 235 (254)
T ss_pred cc------------HHHHHHHHHHHhcCCeEEEEEEeCCCChHHHHHhcCccccccccCCcceecceeeecchhhcccc-
Confidence 97 899999999999999999999999999999999997 4677899999999999997431
Q ss_pred CcchhHHHHHHHHHHHhHHHH
Q 015418 309 DQTRKETEFALSALMEIPSQY 329 (407)
Q Consensus 309 ~~~~~d~~LA~~~L~EIP~Ql 329 (407)
..++++||+++|+|||+||
T Consensus 236 --~~~~~~La~~~L~EiP~Q~ 254 (254)
T cd01459 236 --GNPEAALATAALAEIPSQL 254 (254)
T ss_pred --cccHHHHHHHHHHhccccC
Confidence 1357899999999999996
No 3
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=100.00 E-value=6e-48 Score=345.30 Aligned_cols=137 Identities=49% Similarity=0.883 Sum_probs=128.9
Q ss_pred CccccCC-CCCHHHHHHHHHhhcccccCCCCccceEeecCCCCCC---CCccccC--CCCCccCCHHHHHHHHHhhCCce
Q 015418 125 SLHYIGD-GLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHD---QDVFSFY--SGGRFCYGFEEVLSRYREIVPNL 198 (407)
Q Consensus 125 SLHyi~~-~~N~YqqAI~~Ig~vL~~yD~Dk~iPvfGFGa~~t~~---~~vFsf~--~~~p~c~G~egVl~aYr~~l~~v 198 (407)
||||+++ .+|+||+||++||++|+.||+||+||||||||+.+++ ++||+|+ +++++|.|++|||++|++++++|
T Consensus 1 SLH~~~~~~~N~Y~~ai~~vg~il~~Yd~dk~~p~~GFGa~~~~~~~vsh~F~ln~~~~~p~~~Gi~gvl~~Y~~~~~~v 80 (146)
T PF07002_consen 1 SLHYISPNQPNPYQQAIRAVGEILQDYDSDKMIPAYGFGAKIPPDYSVSHCFPLNGNPQNPECQGIDGVLEAYRKALPKV 80 (146)
T ss_pred CcccCCCCCCCHHHHHHHHHHHHHHhhccCCccceeccCCcCCCCcccccceeeecCCCCCcccCHHHHHHHHHHHhhhe
Confidence 8999998 4899999999999999999999999999999998765 4568776 67899999999999999999999
Q ss_pred eecCCCChHHHHHHHHHHHHh---cCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEecc
Q 015418 199 KLAGPTSFAPVIEMAMSIVEQ---SGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVG 273 (407)
Q Consensus 199 ~LsGPT~FAPVI~~ai~ive~---s~~~Y~VLLIITDG~Itds~d~~~~~l~~d~~eTidaIv~AS~lPLSII~VGVG 273 (407)
+|+|||+|+|||++|++++++ .+.+|+||||||||+|+| |++|++||++||++||||||||||
T Consensus 81 ~l~GPT~fapiI~~a~~~a~~~~~~~~~Y~iLlIlTDG~i~D------------~~~T~~aIv~AS~~PlSIIiVGVG 146 (146)
T PF07002_consen 81 QLSGPTNFAPIINHAAKIAKQSNQNGQQYFILLILTDGQITD------------MEETIDAIVEASKLPLSIIIVGVG 146 (146)
T ss_pred EECCCccHHHHHHHHHHHHhhhccCCceEEEEEEeccccccc------------HHHHHHHHHHHccCCeEEEEEEeC
Confidence 999999999999999999984 567999999999999997 899999999999999999999998
No 4
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=100.00 E-value=2.8e-34 Score=268.92 Aligned_cols=197 Identities=24% Similarity=0.331 Sum_probs=163.8
Q ss_pred eceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeecCCCCCCCCccccCCCCCc
Q 015418 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRF 180 (407)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD~Dk~iPvfGFGa~~t~~~~vFsf~~~~p~ 180 (407)
.++.++||-|+||.. .|. .+..|++++++..++..||+|+.|+||.|+.+..+..+| +
T Consensus 2 ArV~LVLD~SGSM~~-----------~yk---~G~vQ~~~Er~lalA~~~DdDG~i~v~~Fs~~~~~~~~v-t------- 59 (200)
T PF10138_consen 2 ARVYLVLDISGSMRP-----------LYK---DGTVQRVVERILALAAQFDDDGEIDVWFFSTEFDRLPDV-T------- 59 (200)
T ss_pred cEEEEEEeCCCCCch-----------hhh---CccHHHHHHHHHHHHhhcCCCCceEEEEeCCCCCcCCCc-C-------
Confidence 478999999999952 132 468999999999999999999999999999987665544 1
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc-CCc-cEEEEEEeCCccccccccccCCCChhHHHHHHHHH
Q 015418 181 CYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS-GGQ-YHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIV 258 (407)
Q Consensus 181 c~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~s-~~~-Y~VLLIITDG~Itds~d~~~~~l~~d~~eTidaIv 258 (407)
...+++.++.....++.+...|.|+++|||++|++++.++ +.. ...+||||||++++ .+++.++|+
T Consensus 60 ~~~~~~~v~~~~~~~~~~~~~G~t~y~~vm~~v~~~y~~~~~~~~P~~VlFiTDG~~~~------------~~~~~~~i~ 127 (200)
T PF10138_consen 60 LDNYEGYVDELHAGLPDWGRMGGTNYAPVMEDVLDHYFKREPSDAPALVLFITDGGPDD------------RRAIEKLIR 127 (200)
T ss_pred HHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHhhcCCCCCCeEEEEEecCCccc------------hHHHHHHHH
Confidence 1234554433333333445557799999999999998754 333 44558999999986 789999999
Q ss_pred HhcCCCcEEEEEeccCCCcccccccCCCCCCccccceecccchhhhcccCCcchhHHHHHHHHHHHhHHHHHHHHHhccC
Q 015418 259 KASELPLSIVLVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKNHDQTRKETEFALSALMEIPSQYKATIELNIL 338 (407)
Q Consensus 259 ~AS~lPLSII~VGVGd~~F~~M~~LDd~l~~R~rDNvQFV~f~di~~k~~~~~~~d~~LA~~~L~EIP~Ql~ay~~lgiL 338 (407)
+||++||+|+|||||+.+|++|++||+ +.+|.+||+.||.+.++.. ++|++|++.||.|+|.||++++++|||
T Consensus 128 ~as~~pifwqFVgiG~~~f~fL~kLD~-l~gR~vDNa~Ff~~~d~~~------lsD~eLy~~LL~Efp~Wl~~ar~~gi~ 200 (200)
T PF10138_consen 128 EASDEPIFWQFVGIGDSNFGFLEKLDD-LAGRVVDNAGFFAIDDIDE------LSDEELYDRLLAEFPDWLKAARAKGIL 200 (200)
T ss_pred hccCCCeeEEEEEecCCcchHHHHhhc-cCCcccCCcCeEecCCccc------CCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999997 9999999999999999852 579999999999999999999999987
No 5
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=99.82 E-value=8.8e-20 Score=167.63 Aligned_cols=169 Identities=18% Similarity=0.244 Sum_probs=127.2
Q ss_pred ceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeecCCCCCCCCccccCCCCCcc
Q 015418 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRFC 181 (407)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD~Dk~iPvfGFGa~~t~~~~vFsf~~~~p~c 181 (407)
.++++||.|+||.+.. .+.++| ..+.+++++.+|+.++..||.|+...+|+|+.... ++. +
T Consensus 4 dvv~~ID~SgSM~~~~----~~~~~~----k~~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~~~~----~~~-------~ 64 (199)
T cd01457 4 DYTLLIDKSGSMAEAD----EAKERS----RWEEAQESTRALARKCEEYDSDGITVYLFSGDFRR----YDN-------V 64 (199)
T ss_pred CEEEEEECCCcCCCCC----CCCCch----HHHHHHHHHHHHHHHHHhcCCCCeEEEEecCCccc----cCC-------c
Confidence 6899999999998642 122344 24799999999999999999999776666665321 111 1
Q ss_pred CCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHH-Hhc-C----CccEEEEEEeCCccccccccccCCCChhHHHHHH
Q 015418 182 YGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIV-EQS-G----GQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVD 255 (407)
Q Consensus 182 ~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~iv-e~s-~----~~Y~VLLIITDG~Itds~d~~~~~l~~d~~eTid 255 (407)
. .+++.+.+.+. ...|+|++.+.|+.+++.. +.. . ..+.++||||||..++ .+++.+
T Consensus 65 ~-~~~v~~~~~~~----~p~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d------------~~~~~~ 127 (199)
T cd01457 65 N-SSKVDQLFAEN----SPDGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDD------------KDAVER 127 (199)
T ss_pred C-HHHHHHHHhcC----CCCCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCc------------HHHHHH
Confidence 1 56666666543 3469999999999998543 221 1 1278889999999876 678899
Q ss_pred HHHHhcCC-----CcEEEEEeccCC--CcccccccCCCC--CCccccceecccchhhhcc
Q 015418 256 AIVKASEL-----PLSIVLVGVGDG--PWDMMKEFDDNI--PARAFDNFQFVNFTEIMSK 306 (407)
Q Consensus 256 aIv~AS~l-----PLSII~VGVGd~--~F~~M~~LDd~l--~~R~rDNvQFV~f~di~~k 306 (407)
+|++|++. +|.|.|||||++ .+..|++||+.+ .++.||||+||+|+++...
T Consensus 128 ~i~~a~~~l~~~~~i~i~~v~vG~~~~~~~~L~~ld~~~~~~~~~~d~vd~~~~~~~~~~ 187 (199)
T cd01457 128 VIIKASDELDADNELAISFLQIGRDPAATAFLKALDDQLQEVGAKFDIVDTVTWDDMERL 187 (199)
T ss_pred HHHHHHHhhccccCceEEEEEeCCcHHHHHHHHHHhHHHHhcCCcccceeeeeHHhhhcC
Confidence 99999873 899999999985 799999999753 3467899999999998543
No 6
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=98.87 E-value=2.3e-08 Score=86.58 Aligned_cols=150 Identities=19% Similarity=0.280 Sum_probs=106.5
Q ss_pred eceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---CCccceEeecCCCCCCCCccccCCC
Q 015418 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDE---DNLIPCYGFGDASTHDQDVFSFYSG 177 (407)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD~---Dk~iPvfGFGa~~t~~~~vFsf~~~ 177 (407)
.++++.||.|.||.. .....+...+..++..+.. +..|-+++|++.... .+++.
T Consensus 2 ~~v~l~vD~S~SM~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~~~~---~~~~~-- 58 (177)
T smart00327 2 LDVVFLLDGSGSMGP------------------NRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDDATV---LFPLN-- 58 (177)
T ss_pred ccEEEEEeCCCccch------------------HHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCceE---EEccc--
Confidence 478999999999941 2344444444555554444 889999999985322 22221
Q ss_pred CCccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc--C---CccEEEEEEeCCccccccccccCCCChhHHH
Q 015418 178 GRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS--G---GQYHVLLIIADGQVTRSVDTVRGCLSPQEQK 252 (407)
Q Consensus 178 ~p~c~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~s--~---~~Y~VLLIITDG~Itds~d~~~~~l~~d~~e 252 (407)
.+.+.+.+++......+. ..|.|++...|+.+++.+++. . +...+|+|||||...+. +.
T Consensus 59 --~~~~~~~~~~~i~~~~~~--~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~iviitDg~~~~~------------~~ 122 (177)
T smart00327 59 --DSRSKDALLEALASLSYK--LGGGTNLGAALQYALENLFSKSAGSRRGAPKVLILITDGESNDG------------GD 122 (177)
T ss_pred --ccCCHHHHHHHHHhcCCC--CCCCchHHHHHHHHHHHhcCcCCCCCCCCCeEEEEEcCCCCCCC------------cc
Confidence 345677777666654443 578899999999999887521 1 12578899999998751 45
Q ss_pred HHHHHHHhcCCCcEEEEEeccCC-CcccccccCCCCCC
Q 015418 253 TVDAIVKASELPLSIVLVGVGDG-PWDMMKEFDDNIPA 289 (407)
Q Consensus 253 TidaIv~AS~lPLSII~VGVGd~-~F~~M~~LDd~l~~ 289 (407)
+.+++..+.+..+.|++||+|+. +.+.|+.|.....+
T Consensus 123 ~~~~~~~~~~~~i~i~~i~~~~~~~~~~l~~~~~~~~~ 160 (177)
T smart00327 123 LLKAAKELKRSGVKVFVVGVGNDVDEEELKKLASAPGG 160 (177)
T ss_pred HHHHHHHHHHCCCEEEEEEccCccCHHHHHHHhCCCcc
Confidence 67777778788899999999998 89999999864443
No 7
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=98.80 E-value=6.9e-08 Score=84.59 Aligned_cols=147 Identities=19% Similarity=0.259 Sum_probs=102.7
Q ss_pred eceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeecCCCCCCCCccccCCCCCc
Q 015418 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRF 180 (407)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD~Dk~iPvfGFGa~~t~~~~vFsf~~~~p~ 180 (407)
.++++.+|.|+|+.. ...+.|...+..++..+..+..|-+++|+....... .. ..
T Consensus 3 ~~v~~vlD~S~SM~~------------------~~~~~~~~al~~~l~~l~~~~~~~l~~Fs~~~~~~~---~~----~~ 57 (171)
T cd01461 3 KEVVFVIDTSGSMSG------------------TKIEQTKEALLTALKDLPPGDYFNIIGFSDTVEEFS---PS----SV 57 (171)
T ss_pred ceEEEEEECCCCCCC------------------hhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCceeec---Cc----ce
Confidence 479999999999951 136677777777788888777899999988643211 10 01
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHh
Q 015418 181 CYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKA 260 (407)
Q Consensus 181 c~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~s~~~Y~VLLIITDG~Itds~d~~~~~l~~d~~eTidaIv~A 260 (407)
..+.+.+ +...+.+..+...|-|++...|+.+.+..+...+.--++|+||||...+ .+++.+++.++
T Consensus 58 ~~~~~~~-~~~~~~l~~~~~~g~T~l~~al~~a~~~l~~~~~~~~~iillTDG~~~~------------~~~~~~~~~~~ 124 (171)
T cd01461 58 SATAENV-AAAIEYVNRLQALGGTNMNDALEAALELLNSSPGSVPQIILLTDGEVTN------------ESQILKNVREA 124 (171)
T ss_pred eCCHHHH-HHHHHHHHhcCCCCCcCHHHHHHHHHHhhccCCCCccEEEEEeCCCCCC------------HHHHHHHHHHh
Confidence 1222222 2223444455668999999999999888765333446789999999754 46777888888
Q ss_pred cCCCcEEEEEeccC-CCcccccccCC
Q 015418 261 SELPLSIVLVGVGD-GPWDMMKEFDD 285 (407)
Q Consensus 261 S~lPLSII~VGVGd-~~F~~M~~LDd 285 (407)
.+..+-|..||+|. .+...|+.+-+
T Consensus 125 ~~~~i~i~~i~~g~~~~~~~l~~ia~ 150 (171)
T cd01461 125 LSGRIRLFTFGIGSDVNTYLLERLAR 150 (171)
T ss_pred cCCCceEEEEEeCCccCHHHHHHHHH
Confidence 77789999999996 46666776653
No 8
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=98.68 E-value=1.8e-07 Score=85.34 Aligned_cols=147 Identities=14% Similarity=0.229 Sum_probs=97.2
Q ss_pred eceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeecCCCCCCCCccccCCCC--
Q 015418 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGG-- 178 (407)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD~Dk~iPvfGFGa~~t~~~~vFsf~~~~-- 178 (407)
.++++.||.|+||.. +..+.|-..+..++..+..+..|-++.|+...... +.+....
T Consensus 14 ~~vv~llD~SgSM~~------------------~~l~~ak~~~~~ll~~l~~~d~v~lv~F~~~~~~~---~~~~~~~~~ 72 (190)
T cd01463 14 KDIVILLDVSGSMTG------------------QRLHLAKQTVSSILDTLSDNDFFNIITFSNEVNPV---VPCFNDTLV 72 (190)
T ss_pred ceEEEEEECCCCCCc------------------HHHHHHHHHHHHHHHhCCCCCEEEEEEeCCCeeEE---eeecccceE
Confidence 689999999999951 24555556666667777777799999999875422 2221110
Q ss_pred -CccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHh---c------CCccEEEEEEeCCccccccccccCCCCh
Q 015418 179 -RFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQ---S------GGQYHVLLIIADGQVTRSVDTVRGCLSP 248 (407)
Q Consensus 179 -p~c~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~---s------~~~Y~VLLIITDG~Itds~d~~~~~l~~ 248 (407)
......+.+ .+.+..++..|.|++...|+.+.+..++ . ...-.++++||||..++
T Consensus 73 ~~~~~~~~~~----~~~l~~l~~~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~----------- 137 (190)
T cd01463 73 QATTSNKKVL----KEALDMLEAKGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVPEN----------- 137 (190)
T ss_pred ecCHHHHHHH----HHHHhhCCCCCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCCCCc-----------
Confidence 001122333 3445667778999999999999887665 1 11235789999998764
Q ss_pred hHHHHHHHHHHh--cCCCcEEEEEeccCC--CcccccccC
Q 015418 249 QEQKTVDAIVKA--SELPLSIVLVGVGDG--PWDMMKEFD 284 (407)
Q Consensus 249 d~~eTidaIv~A--S~lPLSII~VGVGd~--~F~~M~~LD 284 (407)
..+.++++... .+.++-|..||||.+ +...|++|=
T Consensus 138 -~~~~~~~~~~~~~~~~~v~i~tigiG~~~~d~~~L~~lA 176 (190)
T cd01463 138 -YKEIFDKYNWDKNSEIPVRVFTYLIGREVTDRREIQWMA 176 (190)
T ss_pred -HhHHHHHhcccccCCCcEEEEEEecCCccccchHHHHHH
Confidence 34445554422 235899999999975 577777764
No 9
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=98.67 E-value=4.4e-07 Score=75.92 Aligned_cols=146 Identities=16% Similarity=0.313 Sum_probs=97.5
Q ss_pred ceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---CCccceEeecCCCCCCCCccccCCCC
Q 015418 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDE---DNLIPCYGFGDASTHDQDVFSFYSGG 178 (407)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD~---Dk~iPvfGFGa~~t~~~~vFsf~~~~ 178 (407)
+++++||.|+|+. ....+++...+..++..+.. ...+-+++|+..... ++.+..
T Consensus 2 ~v~~viD~S~Sm~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~~~~---~~~~~~-- 58 (161)
T cd00198 2 DIVFLLDVSGSMG------------------GEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARV---VLPLTT-- 58 (161)
T ss_pred cEEEEEeCCCCcC------------------cchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCccce---eecccc--
Confidence 6899999999982 12455566666666666665 788999999974321 222221
Q ss_pred CccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc--CCccEEEEEEeCCccccccccccCCCChhHHHHHHH
Q 015418 179 RFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS--GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDA 256 (407)
Q Consensus 179 p~c~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~s--~~~Y~VLLIITDG~Itds~d~~~~~l~~d~~eTida 256 (407)
+...+.+.+.-.. +.. ...|.|.+...++.+.+...+. .....+|++||||..++. .....+.
T Consensus 59 --~~~~~~~~~~~~~-~~~-~~~~~t~~~~al~~~~~~~~~~~~~~~~~~lvvitDg~~~~~-----------~~~~~~~ 123 (161)
T cd00198 59 --DTDKADLLEAIDA-LKK-GLGGGTNIGAALRLALELLKSAKRPNARRVIILLTDGEPNDG-----------PELLAEA 123 (161)
T ss_pred --cCCHHHHHHHHHh-ccc-CCCCCccHHHHHHHHHHHhcccCCCCCceEEEEEeCCCCCCC-----------cchhHHH
Confidence 1123333322221 211 3779999999999999998763 456788999999987752 1244556
Q ss_pred HHHhcCCCcEEEEEeccC-CCcccccccCC
Q 015418 257 IVKASELPLSIVLVGVGD-GPWDMMKEFDD 285 (407)
Q Consensus 257 Iv~AS~lPLSII~VGVGd-~~F~~M~~LDd 285 (407)
+..+....+.|.+||+|+ .+-..|+.|+.
T Consensus 124 ~~~~~~~~v~v~~v~~g~~~~~~~l~~l~~ 153 (161)
T cd00198 124 ARELRKLGITVYTIGIGDDANEDELKEIAD 153 (161)
T ss_pred HHHHHHcCCEEEEEEcCCCCCHHHHHHHhc
Confidence 666667799999999998 66667777764
No 10
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=98.64 E-value=3.4e-07 Score=82.64 Aligned_cols=170 Identities=12% Similarity=0.154 Sum_probs=105.9
Q ss_pred eceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceEeecCCCCCCCCccccCCC
Q 015418 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD---EDNLIPCYGFGDASTHDQDVFSFYSG 177 (407)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD---~Dk~iPvfGFGa~~t~~~~vFsf~~~ 177 (407)
+.+++.||-|+|++.. |-+.++...+..+++.+. ++-.+-++.|+.... .++.|...
T Consensus 1 ~Dv~~vlD~SgSm~~~-----------------~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~~~---~~~~l~~~ 60 (186)
T cd01471 1 LDLYLLVDGSGSIGYS-----------------NWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAK---ELIRLSSP 60 (186)
T ss_pred CcEEEEEeCCCCccch-----------------hhHHHHHHHHHHHHHhcccCCCceEEEEEEecCCce---EEEECCCc
Confidence 3689999999999521 224566666666666654 455899999997543 23344321
Q ss_pred CCccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc----CCccEEEEEEeCCccccccccccCCCChhHHHH
Q 015418 178 GRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS----GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKT 253 (407)
Q Consensus 178 ~p~c~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~s----~~~Y~VLLIITDG~Itds~d~~~~~l~~d~~eT 253 (407)
. ....+.+++.-+.+.......|.|+++..|+.+.+...+. ...-.+++|||||..++ ..++
T Consensus 61 ~--~~~~~~~~~~i~~l~~~~~~~G~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~------------~~~~ 126 (186)
T cd01471 61 N--STNKDLALNAIRALLSLYYPNGSTNTTSALLVVEKHLFDTRGNRENAPQLVIIMTDGIPDS------------KFRT 126 (186)
T ss_pred c--ccchHHHHHHHHHHHhCcCCCCCccHHHHHHHHHHHhhccCCCcccCceEEEEEccCCCCC------------Ccch
Confidence 1 1122232222222333334678999999999999887652 12235779999998764 1334
Q ss_pred HHHHHHhcCCCcEEEEEeccC-CCcccccccCCCC-CCccccceecccchhhh
Q 015418 254 VDAIVKASELPLSIVLVGVGD-GPWDMMKEFDDNI-PARAFDNFQFVNFTEIM 304 (407)
Q Consensus 254 idaIv~AS~lPLSII~VGVGd-~~F~~M~~LDd~l-~~R~rDNvQFV~f~di~ 304 (407)
.++..++-+.++-|.+||||. .+.+.|+.|-+.- ..-..++.-+..|+++.
T Consensus 127 ~~~a~~l~~~gv~v~~igiG~~~d~~~l~~ia~~~~~~~~~~~~~~~~~~~~~ 179 (186)
T cd01471 127 LKEARKLRERGVIIAVLGVGQGVNHEENRSLVGCDPDDSPCPLYLQSSWSEVQ 179 (186)
T ss_pred hHHHHHHHHCCCEEEEEEeehhhCHHHHHHhcCCCCCCCCCCeeecCCHHHHH
Confidence 445555556789999999997 4778888876422 11124666667776664
No 11
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.63 E-value=1.7e-07 Score=84.39 Aligned_cols=144 Identities=19% Similarity=0.272 Sum_probs=96.7
Q ss_pred eeceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceEeecCCCCCCCCccccCC
Q 015418 100 SSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD---EDNLIPCYGFGDASTHDQDVFSFYS 176 (407)
Q Consensus 100 ~~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD---~Dk~iPvfGFGa~~t~~~~vFsf~~ 176 (407)
.+++++.||.|+|+... . ...-++|+..+...+...+ ++..+-++.|+.... .++++..
T Consensus 3 ~~~v~~llD~SgSM~~~--------~-------~~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~a~---~~~~l~~ 64 (176)
T cd01464 3 RLPIYLLLDTSGSMAGE--------P-------IEALNQGLQMLQSELRQDPYALESVEISVITFDSAAR---VIVPLTP 64 (176)
T ss_pred CCCEEEEEECCCCCCCh--------H-------HHHHHHHHHHHHHHHhcChhhccccEEEEEEecCCce---EecCCcc
Confidence 36889999999999521 1 1244566666665555432 345799999998542 2333321
Q ss_pred CCCccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCc---------cEEEEEEeCCccccccccccCCCC
Q 015418 177 GGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQ---------YHVLLIIADGQVTRSVDTVRGCLS 247 (407)
Q Consensus 177 ~~p~c~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~s~~~---------Y~VLLIITDG~Itds~d~~~~~l~ 247 (407)
+. ......+...|-|++...|+++.+........ -.++++||||..++.
T Consensus 65 -------~~------~~~~~~l~~~GgT~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~--------- 122 (176)
T cd01464 65 -------LE------SFQPPRLTASGGTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTDD--------- 122 (176)
T ss_pred -------HH------hcCCCcccCCCCCcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCch---------
Confidence 11 11234566789999999999999886542111 247899999997752
Q ss_pred hhHHHHHHHHHHhcCCCcEEEEEeccC-CCcccccccCC
Q 015418 248 PQEQKTVDAIVKASELPLSIVLVGVGD-GPWDMMKEFDD 285 (407)
Q Consensus 248 ~d~~eTidaIv~AS~lPLSII~VGVGd-~~F~~M~~LDd 285 (407)
.....+++.++-...+-|..||||. .+.+.|++|-+
T Consensus 123 --~~~~~~~~~~~~~~~~~i~~igiG~~~~~~~L~~ia~ 159 (176)
T cd01464 123 --LTAAIERIKEARDSKGRIVACAVGPKADLDTLKQITE 159 (176)
T ss_pred --HHHHHHHHHhhcccCCcEEEEEeccccCHHHHHHHHC
Confidence 3444577888777789999999995 67788887764
No 12
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=98.49 E-value=9.3e-07 Score=75.80 Aligned_cols=147 Identities=15% Similarity=0.232 Sum_probs=96.6
Q ss_pred ceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeecCCCCCCCCccccCCCCCcc
Q 015418 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRFC 181 (407)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD~Dk~iPvfGFGa~~t~~~~vFsf~~~~p~c 181 (407)
++++.+|.|+|+... . .....+++..+...+...+.+-.+-++.|++.... ++.+....
T Consensus 2 di~~llD~S~Sm~~~-----------~----~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~~~~---~~~~~~~~--- 60 (161)
T cd01450 2 DIVFLLDGSESVGPE-----------N----FEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVRV---EFSLNDYK--- 60 (161)
T ss_pred cEEEEEeCCCCcCHH-----------H----HHHHHHHHHHHHHheeeCCCceEEEEEEEcCCceE---EEECCCCC---
Confidence 688999999999520 1 11334445555555555556889999999986432 23332211
Q ss_pred CCHHHHHHHHHhhCCceeec-CCCChHHHHHHHHHHHHhcC----CccEEEEEEeCCccccccccccCCCChhHHHHHHH
Q 015418 182 YGFEEVLSRYREIVPNLKLA-GPTSFAPVIEMAMSIVEQSG----GQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDA 256 (407)
Q Consensus 182 ~G~egVl~aYr~~l~~v~Ls-GPT~FAPVI~~ai~ive~s~----~~Y~VLLIITDG~Itds~d~~~~~l~~d~~eTida 256 (407)
..+.+++.-..... .. |-|++...|+.+.+...+.. ..-.++++||||..++. .+..++
T Consensus 61 -~~~~~~~~i~~~~~---~~~~~t~~~~al~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~~------------~~~~~~ 124 (161)
T cd01450 61 -SKDDLLKAVKNLKY---LGGGGTNTGKALQYALEQLFSESNARENVPKVIIVLTDGRSDDG------------GDPKEA 124 (161)
T ss_pred -CHHHHHHHHHhccc---CCCCCccHHHHHHHHHHHhcccccccCCCCeEEEEECCCCCCCC------------cchHHH
Confidence 34455544433211 12 47999999999999887653 45678899999987751 134455
Q ss_pred HHHhcCCCcEEEEEeccCCCcccccccCC
Q 015418 257 IVKASELPLSIVLVGVGDGPWDMMKEFDD 285 (407)
Q Consensus 257 Iv~AS~lPLSII~VGVGd~~F~~M~~LDd 285 (407)
+.+..+..+-|++||||..+.+.|++|-+
T Consensus 125 ~~~~~~~~v~v~~i~~g~~~~~~l~~la~ 153 (161)
T cd01450 125 AAKLKDEGIKVFVVGVGPADEEELREIAS 153 (161)
T ss_pred HHHHHHCCCEEEEEeccccCHHHHHHHhC
Confidence 55555668999999999988888888753
No 13
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=98.46 E-value=2.4e-06 Score=74.98 Aligned_cols=147 Identities=16% Similarity=0.209 Sum_probs=97.2
Q ss_pred eceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeecCCCCCCCCccccCCCCCc
Q 015418 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRF 180 (407)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD~Dk~iPvfGFGa~~t~~~~vFsf~~~~p~ 180 (407)
+++++.+|.|+|+.. ...+.|...+..++..+..+..+-++.|+..... ++.+.+.
T Consensus 1 ~~~~~vlD~S~SM~~------------------~~~~~~k~a~~~~~~~l~~~~~v~li~f~~~~~~---~~~~~~~--- 56 (170)
T cd01465 1 LNLVFVIDRSGSMDG------------------PKLPLVKSALKLLVDQLRPDDRLAIVTYDGAAET---VLPATPV--- 56 (170)
T ss_pred CcEEEEEECCCCCCC------------------hhHHHHHHHHHHHHHhCCCCCEEEEEEecCCccE---EecCccc---
Confidence 479999999999951 1256666777777888877789999999986432 2222211
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcC--CccEEEEEEeCCccccccccccCCCChhHHHHHHHHH
Q 015418 181 CYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSG--GQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIV 258 (407)
Q Consensus 181 c~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~s~--~~Y~VLLIITDG~Itds~d~~~~~l~~d~~eTidaIv 258 (407)
...+.++ +.+.+++..|.|++...++.+.+.+++.. ..--.+++||||..++.. .+.+...+++.
T Consensus 57 -~~~~~l~----~~l~~~~~~g~T~~~~al~~a~~~~~~~~~~~~~~~ivl~TDG~~~~~~--------~~~~~~~~~~~ 123 (170)
T cd01465 57 -RDKAAIL----AAIDRLTAGGSTAGGAGIQLGYQEAQKHFVPGGVNRILLATDGDFNVGE--------TDPDELARLVA 123 (170)
T ss_pred -chHHHHH----HHHHcCCCCCCCCHHHHHHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCC--------CCHHHHHHHHH
Confidence 1223333 33334556789999999999998886542 222557899999865411 12345566666
Q ss_pred HhcCCCcEEEEEeccCC-CcccccccC
Q 015418 259 KASELPLSIVLVGVGDG-PWDMMKEFD 284 (407)
Q Consensus 259 ~AS~lPLSII~VGVGd~-~F~~M~~LD 284 (407)
++.+..+-|..||||.. +...|+++=
T Consensus 124 ~~~~~~v~i~~i~~g~~~~~~~l~~ia 150 (170)
T cd01465 124 QKRESGITLSTLGFGDNYNEDLMEAIA 150 (170)
T ss_pred HhhcCCeEEEEEEeCCCcCHHHHHHHH
Confidence 66677889999999953 455566553
No 14
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=98.43 E-value=1.9e-06 Score=74.32 Aligned_cols=145 Identities=17% Similarity=0.258 Sum_probs=97.3
Q ss_pred ceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeecCCCCCCCCccccCCCCCcc
Q 015418 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRFC 181 (407)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD~Dk~iPvfGFGa~~t~~~~vFsf~~~~p~c 181 (407)
+++|.||-|+||.+.+ ...+..++|...+..++..+..+ .|-++.|+.... .++.+ .
T Consensus 1 dvv~v~D~SgSM~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~-~v~l~~f~~~~~---~~~~~------t 57 (172)
T PF13519_consen 1 DVVFVLDNSGSMNGYD-------------GNRTRIDQAKDALNELLANLPGD-RVGLVSFSDSSR---TLSPL------T 57 (172)
T ss_dssp EEEEEEE-SGGGGTTT-------------SSS-HHHHHHHHHHHHHHHHTTS-EEEEEEESTSCE---EEEEE------E
T ss_pred CEEEEEECCcccCCCC-------------CCCcHHHHHHHHHHHHHHHCCCC-EEEEEEeccccc---ccccc------c
Confidence 5899999999996431 12468888888888889888755 999999998531 12222 3
Q ss_pred CCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhc
Q 015418 182 YGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKAS 261 (407)
Q Consensus 182 ~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~s~~~Y~VLLIITDG~Itds~d~~~~~l~~d~~eTidaIv~AS 261 (407)
...+.+.++-.+..+.....|.|.+...|+.+.++.......=-++|+||||.-+. ...+++..+.
T Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~t~~~~al~~a~~~~~~~~~~~~~iv~iTDG~~~~--------------~~~~~~~~~~ 123 (172)
T PF13519_consen 58 SDKDELKNALNKLSPQGMPGGGTNLYDALQEAAKMLASSDNRRRAIVLITDGEDNS--------------SDIEAAKALK 123 (172)
T ss_dssp SSHHHHHHHHHTHHHHG--SSS--HHHHHHHHHHHHHC-SSEEEEEEEEES-TTHC--------------HHHHHHHHHH
T ss_pred ccHHHHHHHhhcccccccCccCCcHHHHHHHHHHHHHhCCCCceEEEEecCCCCCc--------------chhHHHHHHH
Confidence 46677777766665555668899999999999999876643335568899997553 2234666777
Q ss_pred CCCcEEEEEeccCCCcc--ccccc
Q 015418 262 ELPLSIVLVGVGDGPWD--MMKEF 283 (407)
Q Consensus 262 ~lPLSII~VGVGd~~F~--~M~~L 283 (407)
+..+.|.+||+|...-. .|++|
T Consensus 124 ~~~i~i~~v~~~~~~~~~~~l~~l 147 (172)
T PF13519_consen 124 QQGITIYTVGIGSDSDANEFLQRL 147 (172)
T ss_dssp CTTEEEEEEEES-TT-EHHHHHHH
T ss_pred HcCCeEEEEEECCCccHHHHHHHH
Confidence 89999999999986543 44444
No 15
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=98.43 E-value=1.5e-06 Score=77.03 Aligned_cols=140 Identities=13% Similarity=0.240 Sum_probs=91.1
Q ss_pred ceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeecCCCCCCCCccccCCCCCcc
Q 015418 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRFC 181 (407)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD~Dk~iPvfGFGa~~t~~~~vFsf~~~~p~c 181 (407)
++++.||.|+|+.. +..+.|-..+..++..+.++..+-++.|+..... ++++.+...
T Consensus 2 ~v~~vlD~S~SM~~------------------~rl~~ak~a~~~l~~~l~~~~~~~li~F~~~~~~---~~~~~~~~~-- 58 (155)
T cd01466 2 DLVAVLDVSGSMAG------------------DKLQLVKHALRFVISSLGDADRLSIVTFSTSAKR---LSPLRRMTA-- 58 (155)
T ss_pred cEEEEEECCCCCCc------------------HHHHHHHHHHHHHHHhCCCcceEEEEEecCCccc---cCCCcccCH--
Confidence 68899999999951 1334444445555555555567999999986432 223322111
Q ss_pred CCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcC--CccEEEEEEeCCccccccccccCCCChhHHHHHHHHHH
Q 015418 182 YGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSG--GQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVK 259 (407)
Q Consensus 182 ~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~s~--~~Y~VLLIITDG~Itds~d~~~~~l~~d~~eTidaIv~ 259 (407)
...+. .++.+..+...|-|+....|+.+.+..++.. +.-.++++||||..++ . .++.+
T Consensus 59 ~~~~~----~~~~i~~~~~~g~T~~~~al~~a~~~~~~~~~~~~~~~iillTDG~~~~------------~----~~~~~ 118 (155)
T cd01466 59 KGKRS----AKRVVDGLQAGGGTNVVGGLKKALKVLGDRRQKNPVASIMLLSDGQDNH------------G----AVVLR 118 (155)
T ss_pred HHHHH----HHHHHHhccCCCCccHHHHHHHHHHHHhhcccCCCceEEEEEcCCCCCc------------c----hhhhc
Confidence 11122 2334444667889999999999999876542 2346789999998653 1 22334
Q ss_pred hcCCCcEEEEEeccC-CCcccccccC
Q 015418 260 ASELPLSIVLVGVGD-GPWDMMKEFD 284 (407)
Q Consensus 260 AS~lPLSII~VGVGd-~~F~~M~~LD 284 (407)
+.+.++-|..||+|. .+...|++|=
T Consensus 119 ~~~~~v~v~~igig~~~~~~~l~~iA 144 (155)
T cd01466 119 ADNAPIPIHTFGLGASHDPALLAFIA 144 (155)
T ss_pred ccCCCceEEEEecCCCCCHHHHHHHH
Confidence 566899999999994 5667777664
No 16
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=98.41 E-value=5.3e-06 Score=74.40 Aligned_cols=150 Identities=15% Similarity=0.166 Sum_probs=91.8
Q ss_pred ceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC-CCccceEeecCCCCCCC--CccccCCCC
Q 015418 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDE-DNLIPCYGFGDASTHDQ--DVFSFYSGG 178 (407)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD~-Dk~iPvfGFGa~~t~~~--~vFsf~~~~ 178 (407)
.+.+.||.|+||... +..+.|-..+..++..... +-.+-+|+|....+... .++...+-+
T Consensus 2 ~v~~llD~SgSM~~~-----------------~kl~~ak~a~~~l~~~l~~~~d~~~l~~F~~~~~~~~~~~~~~~~~~~ 64 (174)
T cd01454 2 AVTLLLDLSGSMRSD-----------------RRIDVAKKAAVLLAEALEACGVPHAILGFTTDAGGRERVRWIKIKDFD 64 (174)
T ss_pred EEEEEEECCCCCCCC-----------------cHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCccceEEEEecCcc
Confidence 578999999999521 2344444444444444432 55799999987631111 111110000
Q ss_pred CccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHH
Q 015418 179 RFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIV 258 (407)
Q Consensus 179 p~c~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~s~~~Y~VLLIITDG~Itds~d~~~~~l~~d~~eTidaIv 258 (407)
. . +..+-++.+..+...|.|.+...|+.+.+...+....--++++||||.-++. ++..+.+. ..++.++++.
T Consensus 65 ~---~---~~~~~~~~l~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~iiliTDG~~~~~-~~~~~~~~-~~~~~~~~~~ 136 (174)
T cd01454 65 E---S---LHERARKRLAALSPGGNTRDGAAIRHAAERLLARPEKRKILLVISDGEPNDL-DYYEGNVF-ATEDALRAVI 136 (174)
T ss_pred c---c---cchhHHHHHHccCCCCCCcHHHHHHHHHHHHhcCCCcCcEEEEEeCCCcCcc-cccCcchh-HHHHHHHHHH
Confidence 0 0 0112233344555678899999999999888765444567899999987753 22222221 2345566688
Q ss_pred HhcCCCcEEEEEeccCCC
Q 015418 259 KASELPLSIVLVGVGDGP 276 (407)
Q Consensus 259 ~AS~lPLSII~VGVGd~~ 276 (407)
+|-+..+.+..||||+..
T Consensus 137 ~~~~~gi~v~~igig~~~ 154 (174)
T cd01454 137 EARKLGIEVFGITIDRDA 154 (174)
T ss_pred HHHhCCcEEEEEEecCcc
Confidence 888889999999999865
No 17
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.31 E-value=3.8e-06 Score=77.57 Aligned_cols=160 Identities=16% Similarity=0.229 Sum_probs=95.2
Q ss_pred eceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeecCCCCCCC--C-ccccCCC
Q 015418 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQ--D-VFSFYSG 177 (407)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD~Dk~iPvfGFGa~~t~~~--~-vFsf~~~ 177 (407)
.++++.||.|+||.... ....+..+.|...+..++..+.++..|-+|.|+....... . +++..+-
T Consensus 21 ~~vv~vlD~SgSM~~~~------------~~~~~rl~~ak~a~~~~l~~l~~~~~v~lv~F~~~~~~~~~~~~~~p~~~~ 88 (206)
T cd01456 21 PNVAIVLDNSGSMREVD------------GGGETRLDNAKAALDETANALPDGTRLGLWTFSGDGDNPLDVRVLVPKGCL 88 (206)
T ss_pred CcEEEEEeCCCCCcCCC------------CCcchHHHHHHHHHHHHHHhCCCCceEEEEEecCCCCCCcccccccccccc
Confidence 58999999999996310 0123456666666666777787788999999998543211 1 1111000
Q ss_pred CCccCCHH-HHHHHHHhhCCcee-ecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHH
Q 015418 178 GRFCYGFE-EVLSRYREIVPNLK-LAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVD 255 (407)
Q Consensus 178 ~p~c~G~e-gVl~aYr~~l~~v~-LsGPT~FAPVI~~ai~ive~s~~~Y~VLLIITDG~Itds~d~~~~~l~~d~~eTid 255 (407)
-..+.+.. .-.+...+.+..++ ..|-|+....|+.+.+..+ .+.-..+|+||||.-++. . +..+...
T Consensus 89 ~~~~~~~~~~~~~~l~~~i~~i~~~~G~T~l~~aL~~a~~~l~--~~~~~~iillTDG~~~~~------~---~~~~~~~ 157 (206)
T cd01456 89 TAPVNGFPSAQRSALDAALNSLQTPTGWTPLAAALAEAAAYVD--PGRVNVVVLITDGEDTCG------P---DPCEVAR 157 (206)
T ss_pred ccccCCCCcccHHHHHHHHHhhcCCCCcChHHHHHHHHHHHhC--CCCcceEEEEcCCCccCC------C---CHHHHHH
Confidence 00111210 01222334555666 7889999999999988875 233367799999986641 0 1123334
Q ss_pred HHHHh--cCCCcEEEEEeccCC-Cccccccc
Q 015418 256 AIVKA--SELPLSIVLVGVGDG-PWDMMKEF 283 (407)
Q Consensus 256 aIv~A--S~lPLSII~VGVGd~-~F~~M~~L 283 (407)
.+.+. ..-++.|.+||||.. +-..|+++
T Consensus 158 ~~~~~~~~~~~i~i~~igiG~~~~~~~l~~i 188 (206)
T cd01456 158 ELAKRRTPAPPIKVNVIDFGGDADRAELEAI 188 (206)
T ss_pred HHHHhcCCCCCceEEEEEecCcccHHHHHHH
Confidence 44432 124789999999975 34445544
No 18
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=98.17 E-value=5.2e-05 Score=70.37 Aligned_cols=151 Identities=17% Similarity=0.286 Sum_probs=98.9
Q ss_pred ceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHH-HHHHHHhhcccccCC---CCccceEeecCCCCCCCCccccCCC
Q 015418 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYE-QAISIIGKTLAVFDE---DNLIPCYGFGDASTHDQDVFSFYSG 177 (407)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~Yq-qAI~~Ig~vL~~yD~---Dk~iPvfGFGa~~t~~~~vFsf~~~ 177 (407)
.+++.||-|.|.+. ..++ .++..+-.++..|+- +-.+-+.=|++... ..+.|+.+
T Consensus 2 Di~fllD~S~Si~~------------------~~f~~~~~~f~~~lv~~l~i~~~~~rvgvv~fs~~~~---~~~~~~~~ 60 (192)
T cd01473 2 DLTLILDESASIGY------------------SNWRKDVIPFTEKIINNLNISKDKVHVGILLFAEKNR---DVVPFSDE 60 (192)
T ss_pred cEEEEEeCCCcccH------------------HHHHHHHHHHHHHHHHhCccCCCccEEEEEEecCCce---eEEecCcc
Confidence 57899999999852 2344 245555556666664 45788888887642 23444321
Q ss_pred CCccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcC----CccEEEEEEeCCccccccccccCCCChhHHHH
Q 015418 178 GRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSG----GQYHVLLIIADGQVTRSVDTVRGCLSPQEQKT 253 (407)
Q Consensus 178 ~p~c~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~s~----~~Y~VLLIITDG~Itds~d~~~~~l~~d~~eT 253 (407)
. -..-++++++=+++.+.....|.|+....|+.+.+.+.... ..--|||+||||.-++. ++...
T Consensus 61 ~--~~~~~~l~~~i~~l~~~~~~~g~T~~~~AL~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~~----------~~~~~ 128 (192)
T cd01473 61 E--RYDKNELLKKINDLKNSYRSGGETYIVEALKYGLKNYTKHGNRRKDAPKVTMLFTDGNDTSA----------SKKEL 128 (192)
T ss_pred c--ccCHHHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccCCCCcccCCeEEEEEecCCCCCc----------chhhH
Confidence 1 12244555554443333334688999999999988764322 12578999999987751 13445
Q ss_pred HHHHHHhcCCCcEEEEEeccCCCcccccccCC
Q 015418 254 VDAIVKASELPLSIVLVGVGDGPWDMMKEFDD 285 (407)
Q Consensus 254 idaIv~AS~lPLSII~VGVGd~~F~~M~~LDd 285 (407)
.++...+-+..+-|..||||..+-..|+.+-+
T Consensus 129 ~~~a~~lk~~gV~i~~vGiG~~~~~el~~ia~ 160 (192)
T cd01473 129 QDISLLYKEENVKLLVVGVGAASENKLKLLAG 160 (192)
T ss_pred HHHHHHHHHCCCEEEEEEeccccHHHHHHhcC
Confidence 56777777899999999999987666665543
No 19
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=98.16 E-value=2.3e-05 Score=69.80 Aligned_cols=142 Identities=15% Similarity=0.215 Sum_probs=90.7
Q ss_pred ceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhccccc---CCCCccceEeecCCCCCCCCccccCCCC
Q 015418 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVF---DEDNLIPCYGFGDASTHDQDVFSFYSGG 178 (407)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~y---D~Dk~iPvfGFGa~~t~~~~vFsf~~~~ 178 (407)
++++.+|-|.|++. ..++++...+-.++..+ .++-.|-++.|+..... +|.|+.
T Consensus 2 Dv~~vlD~S~Sm~~------------------~~~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~~~~~---~~~l~~-- 58 (164)
T cd01482 2 DIVFLVDGSWSIGR------------------SNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDPRT---EFDLNA-- 58 (164)
T ss_pred CEEEEEeCCCCcCh------------------hhHHHHHHHHHHHHhheeeCCCceEEEEEEECCCeeE---EEecCC--
Confidence 68999999999952 13444444444444444 35678999999986422 334421
Q ss_pred CccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc-----CCccEEEEEEeCCccccccccccCCCChhHHHH
Q 015418 179 RFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS-----GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKT 253 (407)
Q Consensus 179 p~c~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~s-----~~~Y~VLLIITDG~Itds~d~~~~~l~~d~~eT 253 (407)
....+.+++.-.++- ...|.|+....|+.+.+...+. ...-.++||||||.-++ +.++.
T Consensus 59 --~~~~~~l~~~l~~~~---~~~g~T~~~~aL~~a~~~~~~~~~~~r~~~~k~iillTDG~~~~-----------~~~~~ 122 (164)
T cd01482 59 --YTSKEDVLAAIKNLP---YKGGNTRTGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQD-----------DVELP 122 (164)
T ss_pred --CCCHHHHHHHHHhCc---CCCCCChHHHHHHHHHHHhcccccCCCCCCCEEEEEEcCCCCCc-----------hHHHH
Confidence 233555555544321 1478899999999888654221 22457889999998654 23343
Q ss_pred HHHHHHhcCCCcEEEEEeccCCCcccccccCC
Q 015418 254 VDAIVKASELPLSIVLVGVGDGPWDMMKEFDD 285 (407)
Q Consensus 254 idaIv~AS~lPLSII~VGVGd~~F~~M~~LDd 285 (407)
.+.+. +..+-|..||+|+.+...|++|-+
T Consensus 123 a~~lk---~~gi~i~~ig~g~~~~~~L~~ia~ 151 (164)
T cd01482 123 ARVLR---NLGVNVFAVGVKDADESELKMIAS 151 (164)
T ss_pred HHHHH---HCCCEEEEEecCcCCHHHHHHHhC
Confidence 44444 468899999999987777776654
No 20
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=98.14 E-value=2.3e-05 Score=71.84 Aligned_cols=156 Identities=17% Similarity=0.228 Sum_probs=90.8
Q ss_pred eceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeecCCCCCCCCccccCCCCCc
Q 015418 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRF 180 (407)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD~Dk~iPvfGFGa~~t~~~~vFsf~~~~p~ 180 (407)
+++++.||.|+|++.. ..+.-.+++..+...|..+..+-.+-++.|+..... +|.+... .
T Consensus 1 ~di~~vlD~SgSM~~~---------------~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~~~~---~~~~~~~--~ 60 (198)
T cd01470 1 LNIYIALDASDSIGEE---------------DFDEAKNAIKTLIEKISSYEVSPRYEIISYASDPKE---IVSIRDF--N 60 (198)
T ss_pred CcEEEEEECCCCccHH---------------HHHHHHHHHHHHHHHccccCCCceEEEEEecCCceE---EEecccC--C
Confidence 4789999999999521 012334455555544444444567999999886432 3343211 1
Q ss_pred cCCHHHHHHHHHhhCCcee-ecCCCChHHHHHHHHHHHHhc----C----CccEEEEEEeCCccccccccccCCCChhHH
Q 015418 181 CYGFEEVLSRYREIVPNLK-LAGPTSFAPVIEMAMSIVEQS----G----GQYHVLLIIADGQVTRSVDTVRGCLSPQEQ 251 (407)
Q Consensus 181 c~G~egVl~aYr~~l~~v~-LsGPT~FAPVI~~ai~ive~s----~----~~Y~VLLIITDG~Itds~d~~~~~l~~d~~ 251 (407)
-...+.++++-...-.... ..|-|+....|+++.+..... . ..-.++++||||+-++- .++ .
T Consensus 61 ~~~~~~~~~~l~~~~~~~~~~~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g-------~~~--~ 131 (198)
T cd01470 61 SNDADDVIKRLEDFNYDDHGDKTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNMG-------GSP--L 131 (198)
T ss_pred CCCHHHHHHHHHhCCcccccCccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCCC-------CCh--h
Confidence 1123344443332222221 346799999999887664211 0 12378899999987631 112 3
Q ss_pred HHHHHHHHh----------cCCCcEEEEEeccCC-CcccccccCC
Q 015418 252 KTVDAIVKA----------SELPLSIVLVGVGDG-PWDMMKEFDD 285 (407)
Q Consensus 252 eTidaIv~A----------S~lPLSII~VGVGd~-~F~~M~~LDd 285 (407)
+..+.|.++ ....+.|..||||+. +.+.|+++=.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~v~i~~iGvG~~~~~~~L~~iA~ 176 (198)
T cd01470 132 PTVDKIKNLVYKNNKSDNPREDYLDVYVFGVGDDVNKEELNDLAS 176 (198)
T ss_pred HHHHHHHHHHhcccccccchhcceeEEEEecCcccCHHHHHHHhc
Confidence 334444443 334689999999974 7788887753
No 21
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=98.14 E-value=1.7e-05 Score=85.13 Aligned_cols=145 Identities=22% Similarity=0.240 Sum_probs=95.5
Q ss_pred eceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeecCCCCCCCCccccCCCCCc
Q 015418 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRF 180 (407)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD~Dk~iPvfGFGa~~t~~~~vFsf~~~~p~ 180 (407)
.++++.||.|+||. | +..++|-..+..+|....++-.|-++.|+...... +.. ..
T Consensus 272 ~~vvfvlD~SgSM~--g----------------~~i~~ak~al~~~l~~L~~~d~~~ii~F~~~~~~~---~~~----~~ 326 (596)
T TIGR03788 272 RELVFVIDTSGSMA--G----------------ESIEQAKSALLLALDQLRPGDRFNIIQFDSDVTLL---FPV----PV 326 (596)
T ss_pred ceEEEEEECCCCCC--C----------------ccHHHHHHHHHHHHHhCCCCCEEEEEEECCcceEe---ccc----cc
Confidence 57999999999995 1 13556666776777888888899999999875422 111 00
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc-CCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHH
Q 015418 181 CYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS-GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVK 259 (407)
Q Consensus 181 c~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~s-~~~Y~VLLIITDG~Itds~d~~~~~l~~d~~eTidaIv~ 259 (407)
..+ ++-++...+.+..++..|.|++...|+.+.+..... .+.--.+++||||.+.+ +.+.++++..
T Consensus 327 ~~~-~~~~~~a~~~i~~l~a~GgT~l~~aL~~a~~~~~~~~~~~~~~iillTDG~~~~------------~~~~~~~~~~ 393 (596)
T TIGR03788 327 PAT-AHNLARARQFVAGLQADGGTEMAGALSAALRDDGPESSGALRQVVFLTDGAVGN------------EDALFQLIRT 393 (596)
T ss_pred cCC-HHHHHHHHHHHhhCCCCCCccHHHHHHHHHHhhcccCCCceeEEEEEeCCCCCC------------HHHHHHHHHH
Confidence 011 112233344455666779999999999998764222 12234568899999875 5677777765
Q ss_pred hcCCCcEEEEEeccCC-CcccccccC
Q 015418 260 ASELPLSIVLVGVGDG-PWDMMKEFD 284 (407)
Q Consensus 260 AS~lPLSII~VGVGd~-~F~~M~~LD 284 (407)
+. -..-|..||||+. +...|+.|-
T Consensus 394 ~~-~~~ri~tvGiG~~~n~~lL~~lA 418 (596)
T TIGR03788 394 KL-GDSRLFTVGIGSAPNSYFMRKAA 418 (596)
T ss_pred hc-CCceEEEEEeCCCcCHHHHHHHH
Confidence 53 2456778999985 666677664
No 22
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=98.13 E-value=2.8e-05 Score=68.86 Aligned_cols=141 Identities=16% Similarity=0.282 Sum_probs=89.0
Q ss_pred ceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceEeecCCCCCCCCccccCCCC
Q 015418 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD---EDNLIPCYGFGDASTHDQDVFSFYSGG 178 (407)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD---~Dk~iPvfGFGa~~t~~~~vFsf~~~~ 178 (407)
++++.||-|+|+.. ..++.+...+..++..|+ .+-.+-++-|+..... ++.+..
T Consensus 2 Dvv~vlD~SgSm~~------------------~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~~~~~---~~~~~~-- 58 (164)
T cd01472 2 DIVFLVDGSESIGL------------------SNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDDPRT---EFYLNT-- 58 (164)
T ss_pred CEEEEEeCCCCCCH------------------HHHHHHHHHHHHHHhhcccCCCCeEEEEEEEcCceeE---EEecCC--
Confidence 78999999999952 133444444444455554 3457899999876432 233321
Q ss_pred CccCCHHHHHHHHHhhCCceee-cCCCChHHHHHHHHHHHHhc-----CCccEEEEEEeCCccccccccccCCCChhHHH
Q 015418 179 RFCYGFEEVLSRYREIVPNLKL-AGPTSFAPVIEMAMSIVEQS-----GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQK 252 (407)
Q Consensus 179 p~c~G~egVl~aYr~~l~~v~L-sGPT~FAPVI~~ai~ive~s-----~~~Y~VLLIITDG~Itds~d~~~~~l~~d~~e 252 (407)
....+.+++. +..++. .|.|+....++.|.+..... ...-.++++||||.-++ +..+
T Consensus 59 --~~~~~~~~~~----l~~l~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~iiliTDG~~~~-----------~~~~ 121 (164)
T cd01472 59 --YRSKDDVLEA----VKNLRYIGGGTNTGKALKYVRENLFTEASGSREGVPKVLVVITDGKSQD-----------DVEE 121 (164)
T ss_pred --CCCHHHHHHH----HHhCcCCCCCchHHHHHHHHHHHhCCcccCCCCCCCEEEEEEcCCCCCc-----------hHHH
Confidence 1223444333 333443 78899999999999887642 23346789999997553 1222
Q ss_pred HHHHHHHhcCCCcEEEEEeccCCCcccccccCC
Q 015418 253 TVDAIVKASELPLSIVLVGVGDGPWDMMKEFDD 285 (407)
Q Consensus 253 TidaIv~AS~lPLSII~VGVGd~~F~~M~~LDd 285 (407)
+..+..+..+.|..||+|+.+.+.|+.+=+
T Consensus 122 ---~~~~l~~~gv~i~~ig~g~~~~~~L~~ia~ 151 (164)
T cd01472 122 ---PAVELKQAGIEVFAVGVKNADEEELKQIAS 151 (164)
T ss_pred ---HHHHHHHCCCEEEEEECCcCCHHHHHHHHC
Confidence 233333478899999999988888877643
No 23
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.12 E-value=3.8e-05 Score=68.44 Aligned_cols=140 Identities=17% Similarity=0.213 Sum_probs=83.5
Q ss_pred eceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeecCCCCCCCCccccCCCCCc
Q 015418 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRF 180 (407)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD~Dk~iPvfGFGa~~t~~~~vFsf~~~~p~ 180 (407)
.+++++||.|.|+.... + . ..+..+.|...+..++...+ +..+-++.|+..... ++.+.
T Consensus 3 ~~vv~vlD~S~SM~~~~---~--------~-~~~r~~~a~~~~~~~~~~~~-~~~v~lv~f~~~~~~---~~~~~----- 61 (180)
T cd01467 3 RDIMIALDVSGSMLAQD---F--------V-KPSRLEAAKEVLSDFIDRRE-NDRIGLVVFAGAAFT---QAPLT----- 61 (180)
T ss_pred ceEEEEEECCccccccc---C--------C-CCCHHHHHHHHHHHHHHhCC-CCeEEEEEEcCCeee---ccCCC-----
Confidence 57999999999996421 1 0 12344555555555665544 458999999875421 22221
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHh
Q 015418 181 CYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKA 260 (407)
Q Consensus 181 c~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~s~~~Y~VLLIITDG~Itds~d~~~~~l~~d~~eTidaIv~A 260 (407)
.+...+.+. -+.+......|.|+...-|+.+.+...+....-.+++|||||.-+. +..++ .+.. ..+
T Consensus 62 -~~~~~~~~~-l~~l~~~~~~g~T~l~~al~~a~~~l~~~~~~~~~iiliTDG~~~~------g~~~~--~~~~---~~~ 128 (180)
T cd01467 62 -LDRESLKEL-LEDIKIGLAGQGTAIGDAIGLAIKRLKNSEAKERVIVLLTDGENNA------GEIDP--ATAA---ELA 128 (180)
T ss_pred -ccHHHHHHH-HHHhhhcccCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCC------CCCCH--HHHH---HHH
Confidence 122222221 1222223357889998889988888766544457889999997553 11212 2222 233
Q ss_pred cCCCcEEEEEeccC
Q 015418 261 SELPLSIVLVGVGD 274 (407)
Q Consensus 261 S~lPLSII~VGVGd 274 (407)
....+-|..||||.
T Consensus 129 ~~~gi~i~~i~ig~ 142 (180)
T cd01467 129 KNKGVRIYTIGVGK 142 (180)
T ss_pred HHCCCEEEEEEecC
Confidence 45678888889887
No 24
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=98.07 E-value=2.5e-05 Score=68.41 Aligned_cols=143 Identities=17% Similarity=0.264 Sum_probs=90.3
Q ss_pred ceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeecCCCCCCCCccccCCCCCcc
Q 015418 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRFC 181 (407)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD~Dk~iPvfGFGa~~t~~~~vFsf~~~~p~c 181 (407)
++++.||.+.||... ......||+.+. +...+...|-++.||....... +.-..+
T Consensus 2 ~vvilvD~S~Sm~g~----------------~~~~k~al~~~l---~~L~~~d~fnii~f~~~~~~~~------~~~~~~ 56 (155)
T PF13768_consen 2 DVVILVDTSGSMSGE----------------KELVKDALRAIL---RSLPPGDRFNIIAFGSSVRPLF------PGLVPA 56 (155)
T ss_pred eEEEEEeCCCCCCCc----------------HHHHHHHHHHHH---HhCCCCCEEEEEEeCCEeeEcc------hhHHHH
Confidence 689999999999521 124455555554 4455566999999998543211 110001
Q ss_pred CCHHHHHHHHHhhCCceee-cCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHh
Q 015418 182 YGFEEVLSRYREIVPNLKL-AGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKA 260 (407)
Q Consensus 182 ~G~egVl~aYr~~l~~v~L-sGPT~FAPVI~~ai~ive~s~~~Y~VLLIITDG~Itds~d~~~~~l~~d~~eTidaIv~A 260 (407)
-++-++.-.+.+..+.. .|.|+..+.++.|++... ..+.-..+++||||..+. ..+++.+.+.++
T Consensus 57 --~~~~~~~a~~~I~~~~~~~G~t~l~~aL~~a~~~~~-~~~~~~~IilltDG~~~~-----------~~~~i~~~v~~~ 122 (155)
T PF13768_consen 57 --TEENRQEALQWIKSLEANSGGTDLLAALRAALALLQ-RPGCVRAIILLTDGQPVS-----------GEEEILDLVRRA 122 (155)
T ss_pred --hHHHHHHHHHHHHHhcccCCCccHHHHHHHHHHhcc-cCCCccEEEEEEeccCCC-----------CHHHHHHHHHhc
Confidence 01112222333445666 899999999999887642 223445668999999643 246777777664
Q ss_pred cCCCcEEEEEeccC-CCcccccccC
Q 015418 261 SELPLSIVLVGVGD-GPWDMMKEFD 284 (407)
Q Consensus 261 S~lPLSII~VGVGd-~~F~~M~~LD 284 (407)
. -.+-|..+|+|. .+...|++|-
T Consensus 123 ~-~~~~i~~~~~g~~~~~~~L~~LA 146 (155)
T PF13768_consen 123 R-GHIRIFTFGIGSDADADFLRELA 146 (155)
T ss_pred C-CCceEEEEEECChhHHHHHHHHH
Confidence 4 558888899998 5667777663
No 25
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=98.06 E-value=8.1e-05 Score=65.43 Aligned_cols=135 Identities=19% Similarity=0.291 Sum_probs=86.3
Q ss_pred eceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---CCccceEeecCCCCCCCCccccCCC
Q 015418 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDE---DNLIPCYGFGDASTHDQDVFSFYSG 177 (407)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD~---Dk~iPvfGFGa~~t~~~~vFsf~~~ 177 (407)
+++++.+|.|.|+.. .++++...+..++..+.. .-.+-+..|+..... .-.|.+...
T Consensus 1 ldv~~llD~S~Sm~~-------------------~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~-~~~~~l~~~ 60 (163)
T cd01476 1 LDLLFVLDSSGSVRG-------------------KFEKYKKYIERIVEGLEIGPTATRVALITYSGRGRQ-RVRFNLPKH 60 (163)
T ss_pred CCEEEEEeCCcchhh-------------------hHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCce-EEEecCCCC
Confidence 478999999999841 244555555556666654 678999999885321 112344321
Q ss_pred CCccCCHHHHHHHHHhhCCcee-ecCCCChHHHHHHHHHHHHhc----CCccEEEEEEeCCccccccccccCCCChhHHH
Q 015418 178 GRFCYGFEEVLSRYREIVPNLK-LAGPTSFAPVIEMAMSIVEQS----GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQK 252 (407)
Q Consensus 178 ~p~c~G~egVl~aYr~~l~~v~-LsGPT~FAPVI~~ai~ive~s----~~~Y~VLLIITDG~Itds~d~~~~~l~~d~~e 252 (407)
...+.++++-. .+. ..|.|+....|+.+.+...+. .+...+++++|||..++ +..+
T Consensus 61 ----~~~~~l~~~i~----~l~~~gg~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~-----------~~~~ 121 (163)
T cd01476 61 ----NDGEELLEKVD----NLRFIGGTTATGAAIEVALQQLDPSEGRREGIPKVVVVLTDGRSHD-----------DPEK 121 (163)
T ss_pred ----CCHHHHHHHHH----hCccCCCCccHHHHHHHHHHHhccccCCCCCCCeEEEEECCCCCCC-----------chHH
Confidence 12334443333 233 467899999999999887521 12237889999998764 1234
Q ss_pred HHHHHHHhcCCCcEEEEEeccCCC
Q 015418 253 TVDAIVKASELPLSIVLVGVGDGP 276 (407)
Q Consensus 253 TidaIv~AS~lPLSII~VGVGd~~ 276 (407)
..+.+.+ ..-+.|+.||+|+..
T Consensus 122 ~~~~l~~--~~~v~v~~vg~g~~~ 143 (163)
T cd01476 122 QARILRA--VPNIETFAVGTGDPG 143 (163)
T ss_pred HHHHHhh--cCCCEEEEEECCCcc
Confidence 4556655 466889999999863
No 26
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.92 E-value=9.6e-05 Score=67.49 Aligned_cols=146 Identities=17% Similarity=0.240 Sum_probs=92.3
Q ss_pred eceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhccccc---------CCCCccceEeecCCCCCCCCc
Q 015418 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVF---------DEDNLIPCYGFGDASTHDQDV 171 (407)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~y---------D~Dk~iPvfGFGa~~t~~~~v 171 (407)
+++++.||-|+|++. ..++.+.+.+-.++..+ ..+-.+-++-|+..... +
T Consensus 3 ~dvv~vlD~S~Sm~~------------------~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~~~~---~ 61 (186)
T cd01480 3 VDITFVLDSSESVGL------------------QNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQEV---E 61 (186)
T ss_pred eeEEEEEeCCCccch------------------hhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCCcee---e
Confidence 689999999999952 13444444444444444 22457889999876432 3
Q ss_pred cccCCCCCccCCHHHHHHHHHhhCCcee-ecCCCChHHHHHHHHHHHHh--cCCccEEEEEEeCCccccccccccCCCCh
Q 015418 172 FSFYSGGRFCYGFEEVLSRYREIVPNLK-LAGPTSFAPVIEMAMSIVEQ--SGGQYHVLLIIADGQVTRSVDTVRGCLSP 248 (407)
Q Consensus 172 Fsf~~~~p~c~G~egVl~aYr~~l~~v~-LsGPT~FAPVI~~ai~ive~--s~~~Y~VLLIITDG~Itds~d~~~~~l~~ 248 (407)
|.+... ....+.++ +.+..++ ..|.|+....|+.+.+.... ..+.-.++++||||.-++..
T Consensus 62 ~~l~~~---~~~~~~l~----~~i~~l~~~gg~T~~~~AL~~a~~~l~~~~~~~~~~~iillTDG~~~~~~--------- 125 (186)
T cd01480 62 AGFLRD---IRNYTSLK----EAVDNLEYIGGGTFTDCALKYATEQLLEGSHQKENKFLLVITDGHSDGSP--------- 125 (186)
T ss_pred Eecccc---cCCHHHHH----HHHHhCccCCCCccHHHHHHHHHHHHhccCCCCCceEEEEEeCCCcCCCc---------
Confidence 444321 12334443 3444454 47899999999999988764 12334788999999864310
Q ss_pred hHHHHHHHHHHhcCCCcEEEEEeccCCCcccccccC
Q 015418 249 QEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFD 284 (407)
Q Consensus 249 d~~eTidaIv~AS~lPLSII~VGVGd~~F~~M~~LD 284 (407)
.....+++.++.+..+.|..||||..+-..|+++-
T Consensus 126 -~~~~~~~~~~~~~~gi~i~~vgig~~~~~~L~~IA 160 (186)
T cd01480 126 -DGGIEKAVNEADHLGIKIFFVAVGSQNEEPLSRIA 160 (186)
T ss_pred -chhHHHHHHHHHHCCCEEEEEecCccchHHHHHHH
Confidence 12334555666688999999999986555555553
No 27
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.88 E-value=0.00038 Score=60.73 Aligned_cols=133 Identities=14% Similarity=0.106 Sum_probs=78.5
Q ss_pred ceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeecCCCCCCCCccccCCCCCcc
Q 015418 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRFC 181 (407)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD~Dk~iPvfGFGa~~t~~~~vFsf~~~~p~c 181 (407)
.++++||.|+|+... -+ -....++..++..+.. .+..+-++.|+... . ...+. .-
T Consensus 2 ~v~illD~SgSM~~~--------k~-------~~a~~~~~~l~~~~~~--~~~~v~li~F~~~~--~--~~~~~----~~ 56 (152)
T cd01462 2 PVILLVDQSGSMYGA--------PE-------EVAKAVALALLRIALA--ENRDTYLILFDSEF--Q--TKIVD----KT 56 (152)
T ss_pred CEEEEEECCCCCCCC--------HH-------HHHHHHHHHHHHHHHH--cCCcEEEEEeCCCc--e--EEecC----Cc
Confidence 478999999999521 01 1234444455554444 24478899998871 1 11111 11
Q ss_pred CCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCc-cccccccccCCCChhHHHHHHHHHHh
Q 015418 182 YGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQ-VTRSVDTVRGCLSPQEQKTVDAIVKA 260 (407)
Q Consensus 182 ~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~s~~~Y~VLLIITDG~-Itds~d~~~~~l~~d~~eTidaIv~A 260 (407)
..+..+++. +..+...|.|++.+.|+.+.+..++....=.+++|||||. -.+ ..+..++...+
T Consensus 57 ~~~~~~~~~----l~~~~~~ggT~l~~al~~a~~~l~~~~~~~~~ivliTDG~~~~~------------~~~~~~~~~~~ 120 (152)
T cd01462 57 DDLEEPVEF----LSGVQLGGGTDINKALRYALELIERRDPRKADIVLITDGYEGGV------------SDELLREVELK 120 (152)
T ss_pred ccHHHHHHH----HhcCCCCCCcCHHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC------------CHHHHHHHHHH
Confidence 234444443 3345567999999999999998876533336789999995 222 12332223333
Q ss_pred cCCCcEEEEEeccCC
Q 015418 261 SELPLSIVLVGVGDG 275 (407)
Q Consensus 261 S~lPLSII~VGVGd~ 275 (407)
....+=|..||||+.
T Consensus 121 ~~~~~~v~~~~~g~~ 135 (152)
T cd01462 121 RSRVARFVALALGDH 135 (152)
T ss_pred HhcCcEEEEEEecCC
Confidence 344566777777763
No 28
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=97.81 E-value=0.00014 Score=63.40 Aligned_cols=148 Identities=15% Similarity=0.220 Sum_probs=87.9
Q ss_pred ceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeecCCCCCCCCccccCCCCCcc
Q 015418 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRFC 181 (407)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD~Dk~iPvfGFGa~~t~~~~vFsf~~~~p~c 181 (407)
++++.||-|.|++.. ..+...++|..+..-+...+..-.+-+.-|+.... .+|+|+..
T Consensus 1 DivflvD~S~sm~~~---------------~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~~~---~~~~~~~~---- 58 (178)
T PF00092_consen 1 DIVFLVDTSGSMSGD---------------NFEKAKQFVKSIISRLSISNNGTRVGIVTFSDSAR---VLFSLTDY---- 58 (178)
T ss_dssp EEEEEEE-STTSCHH---------------HHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSSEE---EEEETTSH----
T ss_pred CEEEEEeCCCCCchH---------------HHHHHHHHHHHHHHhhhccccccccceeeeecccc---cccccccc----
Confidence 478999999999621 01234444555544444667777899999988654 34555321
Q ss_pred CCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc-----CCccEEEEEEeCCccccccccccCCCChhHHHHHHH
Q 015418 182 YGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS-----GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDA 256 (407)
Q Consensus 182 ~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~s-----~~~Y~VLLIITDG~Itds~d~~~~~l~~d~~eTida 256 (407)
...+.+++.- ........|.|+.+..|+.|.+..... .....+|++||||..++.. ...+....
T Consensus 59 ~~~~~~~~~i--~~~~~~~~g~t~~~~aL~~a~~~l~~~~~~~r~~~~~~iiliTDG~~~~~~---------~~~~~~~~ 127 (178)
T PF00092_consen 59 QSKNDLLNAI--NDSIPSSGGGTNLGAALKFAREQLFSSNNGGRPNSPKVIILITDGNSNDSD---------SPSEEAAN 127 (178)
T ss_dssp SSHHHHHHHH--HTTGGCCBSSB-HHHHHHHHHHHTTSGGGTTGTTSEEEEEEEESSSSSSHS---------GHHHHHHH
T ss_pred cccccccccc--cccccccchhhhHHHHHhhhhhcccccccccccccccceEEEEeecccCCc---------chHHHHHH
Confidence 2334444332 123345779999999999999986543 4567899999999988631 12233333
Q ss_pred HHHhcCCCcEEEEEeccCCCcccccccC
Q 015418 257 IVKASELPLSIVLVGVGDGPWDMMKEFD 284 (407)
Q Consensus 257 Iv~AS~lPLSII~VGVGd~~F~~M~~LD 284 (407)
+.+. .-+.++.||++..+-..|+.|-
T Consensus 128 ~~~~--~~i~~~~ig~~~~~~~~l~~la 153 (178)
T PF00092_consen 128 LKKS--NGIKVIAIGIDNADNEELRELA 153 (178)
T ss_dssp HHHH--CTEEEEEEEESCCHHHHHHHHS
T ss_pred HHHh--cCcEEEEEecCcCCHHHHHHHh
Confidence 3332 4555555555344555555553
No 29
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=97.81 E-value=0.00016 Score=65.79 Aligned_cols=146 Identities=15% Similarity=0.197 Sum_probs=87.4
Q ss_pred eceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC-CCCccceEeecCCCCCCCCccccCCCCC
Q 015418 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD-EDNLIPCYGFGDASTHDQDVFSFYSGGR 179 (407)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD-~Dk~iPvfGFGa~~t~~~~vFsf~~~~p 179 (407)
+++++.||-|+|++.. +.+++..+-.++..|+ .+-.+-++.|+.... .+|.|+...
T Consensus 5 ~Dvv~llD~SgSm~~~-------------------~~~~~~~~~~l~~~~~~~~~rvglv~Fs~~~~---~~~~l~~~~- 61 (185)
T cd01474 5 FDLYFVLDKSGSVAAN-------------------WIEIYDFVEQLVDRFNSPGLRFSFITFSTRAT---KILPLTDDS- 61 (185)
T ss_pred eeEEEEEeCcCchhhh-------------------HHHHHHHHHHHHHHcCCCCcEEEEEEecCCce---EEEeccccH-
Confidence 5899999999999521 1112222333333333 356899999987532 245554221
Q ss_pred ccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHh--cCCcc--EEEEEEeCCccccccccccCCCChhHHHHHH
Q 015418 180 FCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQ--SGGQY--HVLLIIADGQVTRSVDTVRGCLSPQEQKTVD 255 (407)
Q Consensus 180 ~c~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~--s~~~Y--~VLLIITDG~Itds~d~~~~~l~~d~~eTid 255 (407)
+.+.++-. .+..+...|.|+....|+.|.+.+.. .++.. .++++||||..++.. ...+.+
T Consensus 62 -----~~~~~~l~-~l~~~~~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~villTDG~~~~~~----------~~~~~~ 125 (185)
T cd01474 62 -----SAIIKGLE-VLKKVTPSGQTYIHEGLENANEQIFNRNGGGRETVSVIIALTDGQLLLNG----------HKYPEH 125 (185)
T ss_pred -----HHHHHHHH-HHhccCCCCCCcHHHHHHHHHHHHHhhccCCCCCCeEEEEEcCCCcCCCC----------CcchHH
Confidence 12222211 23445557899999999999877632 22222 778999999874310 112233
Q ss_pred HHHHhcCCCcEEEEEeccCCCcccccccCC
Q 015418 256 AIVKASELPLSIVLVGVGDGPWDMMKEFDD 285 (407)
Q Consensus 256 aIv~AS~lPLSII~VGVGd~~F~~M~~LDd 285 (407)
+...+-+.-+-|..||||+.+...|+.+=+
T Consensus 126 ~a~~l~~~gv~i~~vgv~~~~~~~L~~iA~ 155 (185)
T cd01474 126 EAKLSRKLGAIVYCVGVTDFLKSQLINIAD 155 (185)
T ss_pred HHHHHHHcCCEEEEEeechhhHHHHHHHhC
Confidence 333444567889999998877777777643
No 30
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=97.73 E-value=0.00041 Score=63.99 Aligned_cols=139 Identities=13% Similarity=0.173 Sum_probs=89.7
Q ss_pred eceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---CCccceEeecCCCCCCCCccccCCC
Q 015418 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDE---DNLIPCYGFGDASTHDQDVFSFYSG 177 (407)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD~---Dk~iPvfGFGa~~t~~~~vFsf~~~ 177 (407)
.+++|+||.|.||... +-.+|-.++|-..+..++..+.+ ...+=++.|++...+. +.+|+.+
T Consensus 4 r~ivi~lD~S~SM~a~-------------D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~~--~~PlT~D 68 (183)
T cd01453 4 RHLIIVIDCSRSMEEQ-------------DLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEK--LTDLTGN 68 (183)
T ss_pred eEEEEEEECcHHHhcC-------------CCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccEE--EECCCCC
Confidence 4799999999999632 11478999999999999987733 3578889996543322 2233211
Q ss_pred CCccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCC--ccEEEEEEeCCccccccccccCCCChhHHHHHH
Q 015418 178 GRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGG--QYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVD 255 (407)
Q Consensus 178 ~p~c~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~s~~--~Y~VLLIITDG~Itds~d~~~~~l~~d~~eTid 255 (407)
.+.++..-+.. +...|-|++...|+.|.+..++... +=.||||++||.-.+ ..+..+
T Consensus 69 ------~~~~~~~L~~~---~~~~G~t~l~~aL~~A~~~l~~~~~~~~~~iiil~sd~~~~~------------~~~~~~ 127 (183)
T cd01453 69 ------PRKHIQALKTA---RECSGEPSLQNGLEMALESLKHMPSHGSREVLIIFSSLSTCD------------PGNIYE 127 (183)
T ss_pred ------HHHHHHHhhcc---cCCCCchhHHHHHHHHHHHHhcCCccCceEEEEEEcCCCcCC------------hhhHHH
Confidence 22333332222 2346779999999999988865322 224788899986543 112223
Q ss_pred HHHHhcCCCcEEEEEeccCC
Q 015418 256 AIVKASELPLSIVLVGVGDG 275 (407)
Q Consensus 256 aIv~AS~lPLSII~VGVGd~ 275 (407)
++..+.+..+-|-+||||.+
T Consensus 128 ~~~~l~~~~I~v~~IgiG~~ 147 (183)
T cd01453 128 TIDKLKKENIRVSVIGLSAE 147 (183)
T ss_pred HHHHHHHcCcEEEEEEechH
Confidence 45555566788889999853
No 31
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=97.72 E-value=0.00041 Score=74.89 Aligned_cols=141 Identities=13% Similarity=0.203 Sum_probs=92.9
Q ss_pred eceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCC---CccceEeecCCCCCCCCccccCCC
Q 015418 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDED---NLIPCYGFGDASTHDQDVFSFYSG 177 (407)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD~D---k~iPvfGFGa~~t~~~~vFsf~~~ 177 (407)
+++++.||-|+|++. .|-.++|+..+..++..++.. -.+-+..|+.... .+|.|...
T Consensus 43 lDIvFLLD~SgSMg~-----------------~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~~r---~vfpL~s~ 102 (576)
T PTZ00441 43 VDLYLLVDGSGSIGY-----------------HNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNNTT---ELIRLGSG 102 (576)
T ss_pred ceEEEEEeCCCccCC-----------------ccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCce---EEEecCCC
Confidence 789999999999962 133467777777777777542 2333467876533 23454321
Q ss_pred CCccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcC---CccEEEEEEeCCccccccccccCCCChhHHHHH
Q 015418 178 GRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSG---GQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTV 254 (407)
Q Consensus 178 ~p~c~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~s~---~~Y~VLLIITDG~Itds~d~~~~~l~~d~~eTi 254 (407)
. -...+.++.+-.++...+...|-|++...|+.+.+...+.+ ..--|+|+||||.-++ ..+++
T Consensus 103 ~--s~Dk~~aL~~I~sL~~~~~pgGgTnig~AL~~Aae~L~sr~~R~nvpKVVILLTDG~sns------------~~dvl 168 (576)
T PTZ00441 103 A--SKDKEQALIIVKSLRKTYLPYGKTNMTDALLEVRKHLNDRVNRENAIQLVILMTDGIPNS------------KYRAL 168 (576)
T ss_pred c--cccHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhhcccccCCceEEEEEecCCCCC------------cccHH
Confidence 1 12334555555555555666799999999999988765431 2236889999998653 13455
Q ss_pred HHHHHhcCCCcEEEEEeccCC
Q 015418 255 DAIVKASELPLSIVLVGVGDG 275 (407)
Q Consensus 255 daIv~AS~lPLSII~VGVGd~ 275 (407)
+++.......+-|..||||.+
T Consensus 169 eaAq~LR~~GVeI~vIGVG~g 189 (576)
T PTZ00441 169 EESRKLKDRNVKLAVIGIGQG 189 (576)
T ss_pred HHHHHHHHCCCEEEEEEeCCC
Confidence 556666677999999999974
No 32
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=97.69 E-value=0.00039 Score=65.40 Aligned_cols=141 Identities=17% Similarity=0.232 Sum_probs=91.3
Q ss_pred eceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---CCccceEeecCCCCCCCCccccCCC
Q 015418 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDE---DNLIPCYGFGDASTHDQDVFSFYSG 177 (407)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD~---Dk~iPvfGFGa~~t~~~~vFsf~~~ 177 (407)
+.+++.||-|+|++. ..++++...+..++..++. .-.+-++.|+.... .+|.|+..
T Consensus 3 ~DlvfllD~S~Sm~~------------------~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~~~---~~~~l~~~ 61 (224)
T cd01475 3 TDLVFLIDSSRSVRP------------------ENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVK---QEFPLGRF 61 (224)
T ss_pred ccEEEEEeCCCCCCH------------------HHHHHHHHHHHHHHHhcccCCCccEEEEEEecCcee---EEeccccc
Confidence 579999999999851 2577777778777887764 34899999998753 24565421
Q ss_pred CCccCCHHHHHHHHHhhCCcee-ecCCCChHHHHHHHHHHHH-h-c---CCc---cEEEEEEeCCccccccccccCCCCh
Q 015418 178 GRFCYGFEEVLSRYREIVPNLK-LAGPTSFAPVIEMAMSIVE-Q-S---GGQ---YHVLLIIADGQVTRSVDTVRGCLSP 248 (407)
Q Consensus 178 ~p~c~G~egVl~aYr~~l~~v~-LsGPT~FAPVI~~ai~ive-~-s---~~~---Y~VLLIITDG~Itds~d~~~~~l~~ 248 (407)
...+++.++-. .++ +.|.|+-.-.|+.+.+.+- + . .+. -.|+|+||||.-.+
T Consensus 62 ----~~~~~l~~~i~----~i~~~~~~t~tg~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s~~----------- 122 (224)
T cd01475 62 ----KSKADLKRAVR----RMEYLETGTMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQD----------- 122 (224)
T ss_pred ----CCHHHHHHHHH----hCcCCCCCChHHHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCCcc-----------
Confidence 22344544433 232 4567877777777776531 1 1 111 37889999998654
Q ss_pred hHHHHHHHHHHhcCCCcEEEEEeccCCCcccccccC
Q 015418 249 QEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFD 284 (407)
Q Consensus 249 d~~eTidaIv~AS~lPLSII~VGVGd~~F~~M~~LD 284 (407)
+..+..+. +-..-+.|..||||+.+...|+++=
T Consensus 123 ~~~~~a~~---lk~~gv~i~~VgvG~~~~~~L~~ia 155 (224)
T cd01475 123 DVSEVAAK---ARALGIEMFAVGVGRADEEELREIA 155 (224)
T ss_pred cHHHHHHH---HHHCCcEEEEEeCCcCCHHHHHHHh
Confidence 23333333 3356789999999997766666553
No 33
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=97.67 E-value=0.00078 Score=60.98 Aligned_cols=146 Identities=16% Similarity=0.228 Sum_probs=89.3
Q ss_pred eEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhccc-ccCCCCccceEeecCCCCCCCCccccCCCCCcc
Q 015418 103 LIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLA-VFDEDNLIPCYGFGDASTHDQDVFSFYSGGRFC 181 (407)
Q Consensus 103 liVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~-~yD~Dk~iPvfGFGa~~t~~~~vFsf~~~~p~c 181 (407)
+++.||.|+||.. .+..+.|...+..++. .+..+..+-++.|.....+ .++.+ .
T Consensus 3 v~lvlD~SgSM~~-----------------~~rl~~ak~a~~~~~~~~~~~~d~v~lv~F~~~~~~--~~~~~------t 57 (178)
T cd01451 3 VIFVVDASGSMAA-----------------RHRMAAAKGAVLSLLRDAYQRRDKVALIAFRGTEAE--VLLPP------T 57 (178)
T ss_pred EEEEEECCccCCC-----------------ccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCce--EEeCC------C
Confidence 6789999999952 1245666666555553 3445668999999764211 12222 1
Q ss_pred CCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHH-hc--CCccEEEEEEeCCccccccccccCCCChhHHHHHHHHH
Q 015418 182 YGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVE-QS--GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIV 258 (407)
Q Consensus 182 ~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive-~s--~~~Y~VLLIITDG~Itds~d~~~~~l~~d~~eTidaIv 258 (407)
...+.+. +.+..+...|-|++..-|+.+.+.++ +. .+.-.++++||||.-+... ++......+++.
T Consensus 58 ~~~~~~~----~~l~~l~~~G~T~l~~aL~~a~~~l~~~~~~~~~~~~ivliTDG~~~~g~-------~~~~~~~~~~~~ 126 (178)
T cd01451 58 RSVELAK----RRLARLPTGGGTPLAAGLLAAYELAAEQARDPGQRPLIVVITDGRANVGP-------DPTADRALAAAR 126 (178)
T ss_pred CCHHHHH----HHHHhCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCCCCCC-------CchhHHHHHHHH
Confidence 2334433 33445567899999999999998872 22 1223678999999865311 111112245556
Q ss_pred HhcCCCcEEEEEeccCCCc--ccccccC
Q 015418 259 KASELPLSIVLVGVGDGPW--DMMKEFD 284 (407)
Q Consensus 259 ~AS~lPLSII~VGVGd~~F--~~M~~LD 284 (407)
++....+.|+.||+|.... +.|++|=
T Consensus 127 ~l~~~gi~v~~I~~~~~~~~~~~l~~iA 154 (178)
T cd01451 127 KLRARGISALVIDTEGRPVRRGLAKDLA 154 (178)
T ss_pred HHHhcCCcEEEEeCCCCccCccHHHHHH
Confidence 6667788999999987533 3455553
No 34
>PRK13685 hypothetical protein; Provisional
Probab=97.65 E-value=0.0005 Score=68.69 Aligned_cols=143 Identities=16% Similarity=0.148 Sum_probs=92.9
Q ss_pred eceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeecCCCCCCCCccccCCCCCc
Q 015418 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRF 180 (407)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD~Dk~iPvfGFGa~~t~~~~vFsf~~~~p~ 180 (407)
.+++++||.|+||... +..+|-.+.|-..+..++..+..+..+-++.|++...- +..+.
T Consensus 89 ~~vvlvlD~S~SM~~~-------------D~~p~RL~~ak~~~~~~l~~l~~~d~vglv~Fa~~a~~---~~p~t----- 147 (326)
T PRK13685 89 AVVMLVIDVSQSMRAT-------------DVEPNRLAAAQEAAKQFADELTPGINLGLIAFAGTATV---LVSPT----- 147 (326)
T ss_pred ceEEEEEECCccccCC-------------CCCCCHHHHHHHHHHHHHHhCCCCCeEEEEEEcCceee---cCCCC-----
Confidence 4699999999999632 11357888888888888988877778999999986431 11221
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHh--------cCCccEEEEEEeCCccccccccccCCCChhHHH
Q 015418 181 CYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQ--------SGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQK 252 (407)
Q Consensus 181 c~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~--------s~~~Y~VLLIITDG~Itds~d~~~~~l~~d~~e 252 (407)
...+.+ +..+..+...+-|+...-|..+.+.+++ .+..--++|+||||.-+...+ +.+...
T Consensus 148 -~d~~~l----~~~l~~l~~~~~T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~~------~~~~~~ 216 (326)
T PRK13685 148 -TNREAT----KNAIDKLQLADRTATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPTN------PDNPRG 216 (326)
T ss_pred -CCHHHH----HHHHHhCCCCCCcchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCCC------CCCccc
Confidence 223322 2334455567778888888888887653 111234568999997553110 000111
Q ss_pred HHHHHHHhcCCCcEEEEEeccCC
Q 015418 253 TVDAIVKASELPLSIVLVGVGDG 275 (407)
Q Consensus 253 TidaIv~AS~lPLSII~VGVGd~ 275 (407)
..+++..|.+..+.|-.||||..
T Consensus 217 ~~~aa~~a~~~gi~i~~Ig~G~~ 239 (326)
T PRK13685 217 AYTAARTAKDQGVPISTISFGTP 239 (326)
T ss_pred HHHHHHHHHHcCCeEEEEEECCC
Confidence 23456666777888999999973
No 35
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=97.61 E-value=0.00028 Score=61.93 Aligned_cols=121 Identities=21% Similarity=0.263 Sum_probs=80.3
Q ss_pred eEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeecCCCCCCCCccccCCCCCccC
Q 015418 103 LIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRFCY 182 (407)
Q Consensus 103 liVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD~Dk~iPvfGFGa~~t~~~~vFsf~~~~p~c~ 182 (407)
+.||||-|+|.. .....+++..|..+++.+ ...+-++=|-++......+ .
T Consensus 1 i~vaiDtSGSis------------------~~~l~~fl~ev~~i~~~~--~~~v~vi~~D~~v~~~~~~-~--------- 50 (126)
T PF09967_consen 1 IVVAIDTSGSIS------------------DEELRRFLSEVAGILRRF--PAEVHVIQFDAEVQDVQVF-R--------- 50 (126)
T ss_pred CEEEEECCCCCC------------------HHHHHHHHHHHHHHHHhC--CCCEEEEEECCEeeeeeEE-e---------
Confidence 579999999984 237888999999999999 4458888887765433221 1
Q ss_pred CHHHHHHHHHhhCCcee--ecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHh
Q 015418 183 GFEEVLSRYREIVPNLK--LAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKA 260 (407)
Q Consensus 183 G~egVl~aYr~~l~~v~--LsGPT~FAPVI~~ai~ive~s~~~Y~VLLIITDG~Itds~d~~~~~l~~d~~eTidaIv~A 260 (407)
.. ...+..++ =.|.|+|.|+++.+.+. .....++++||||..... ..+
T Consensus 51 ~~-------~~~~~~~~~~GgGGTdf~pvf~~~~~~----~~~~~~vi~fTDg~~~~~-------------------~~~ 100 (126)
T PF09967_consen 51 SL-------EDELRDIKLKGGGGTDFRPVFEYLEEN----RPRPSVVIYFTDGEGWPP-------------------EEA 100 (126)
T ss_pred cc-------cccccccccCCCCCCcchHHHHHHHhc----CCCCCEEEEEeCCCCCCC-------------------CCC
Confidence 10 11122222 24789999999998654 334577889999987531 012
Q ss_pred cCCCcEEEEEe--ccCCCccccccc
Q 015418 261 SELPLSIVLVG--VGDGPWDMMKEF 283 (407)
Q Consensus 261 S~lPLSII~VG--VGd~~F~~M~~L 283 (407)
=.+|+=|++.| -...||+..-+|
T Consensus 101 P~~~vlWvl~~~~~~~~P~G~vv~l 125 (126)
T PF09967_consen 101 PPYPVLWVLPGNRNPKAPFGRVVRL 125 (126)
T ss_pred CCCcEEEEEeCCCCCCCCCEEEEEe
Confidence 27899999999 223456655444
No 36
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=97.56 E-value=0.001 Score=62.22 Aligned_cols=147 Identities=9% Similarity=0.143 Sum_probs=97.5
Q ss_pred eceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---------CCccceEeecCCCCCCCCc
Q 015418 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDE---------DNLIPCYGFGDASTHDQDV 171 (407)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD~---------Dk~iPvfGFGa~~t~~~~v 171 (407)
+.++++||-|.|++ .+.++++..-|..++..++. .-.+-+.-|+..... .
T Consensus 20 ~DivfvlD~S~Sm~------------------~~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~a~~---~ 78 (193)
T cd01477 20 LDIVFVVDNSKGMT------------------QGGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSNATV---V 78 (193)
T ss_pred eeEEEEEeCCCCcc------------------hhhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCceEE---E
Confidence 56999999999985 13477787777777777665 257888888775422 3
Q ss_pred cccCCCCCccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc-----CCccEEEEEEeCCccccccccccCCC
Q 015418 172 FSFYSGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS-----GGQYHVLLIIADGQVTRSVDTVRGCL 246 (407)
Q Consensus 172 Fsf~~~~p~c~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~s-----~~~Y~VLLIITDG~Itds~d~~~~~l 246 (407)
|+|+ .....++++++.+..+..+...|.|+...-|+.+.++.... .+.--|+++||||.-...
T Consensus 79 ~~L~----d~~~~~~~~~ai~~~~~~~~~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~~-------- 146 (193)
T cd01477 79 ADLN----DLQSFDDLYSQIQGSLTDVSSTNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDEG-------- 146 (193)
T ss_pred Eecc----cccCHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCCC--------
Confidence 4553 23356778777776565665567899999999998887642 123577899999854321
Q ss_pred ChhHHHHHHHHHHhcCCCcEEEEEeccCC-Cccccccc
Q 015418 247 SPQEQKTVDAIVKASELPLSIVLVGVGDG-PWDMMKEF 283 (407)
Q Consensus 247 ~~d~~eTidaIv~AS~lPLSII~VGVGd~-~F~~M~~L 283 (407)
.....++..++.+..+-|.-||||.. +=..|++|
T Consensus 147 ---~~~~~~~a~~l~~~GI~i~tVGiG~~~d~~~~~~L 181 (193)
T cd01477 147 ---SNDPRPIAARLKSTGIAIITVAFTQDESSNLLDKL 181 (193)
T ss_pred ---CCCHHHHHHHHHHCCCEEEEEEeCCCCCHHHHHHH
Confidence 01122334445577999999999984 21235554
No 37
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=97.52 E-value=0.0011 Score=60.22 Aligned_cols=135 Identities=19% Similarity=0.269 Sum_probs=90.9
Q ss_pred eceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---CCccceEeecCCCCCCCCccccCCC
Q 015418 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDE---DNLIPCYGFGDASTHDQDVFSFYSG 177 (407)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD~---Dk~iPvfGFGa~~t~~~~vFsf~~~ 177 (407)
+.+++.||-|.|.+ +..++++..-+..++..++. .-.+-+..|+.... ..|.|.
T Consensus 1 ~Di~fvlD~S~S~~------------------~~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~~~---~~~~l~-- 57 (177)
T cd01469 1 MDIVFVLDGSGSIY------------------PDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSESFR---TEFTLN-- 57 (177)
T ss_pred CcEEEEEeCCCCCC------------------HHHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCcee---EEEecC--
Confidence 36899999998874 23677888888888888876 45888999988642 234553
Q ss_pred CCccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHH--HhcC---CccEEEEEEeCCccccccccccCCCChhHHH
Q 015418 178 GRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIV--EQSG---GQYHVLLIIADGQVTRSVDTVRGCLSPQEQK 252 (407)
Q Consensus 178 ~p~c~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~iv--e~s~---~~Y~VLLIITDG~Itds~d~~~~~l~~d~~e 252 (407)
+ ....+.++++=+. ++ .+.|.|+....|+.|.+.+ ...+ +.-.|+|+||||.-++.. .
T Consensus 58 ~--~~~~~~~~~~i~~-~~--~~~g~T~~~~AL~~a~~~l~~~~~g~R~~~~kv~illTDG~~~~~~------------~ 120 (177)
T cd01469 58 E--YRTKEEPLSLVKH-IS--QLLGLTNTATAIQYVVTELFSESNGARKDATKVLVVITDGESHDDP------------L 120 (177)
T ss_pred c--cCCHHHHHHHHHh-Cc--cCCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEeCCCCCCcc------------c
Confidence 1 1234455444332 22 3578899999999998875 2221 235788999999987631 1
Q ss_pred HHHHHHHhcCCCcEEEEEeccCC
Q 015418 253 TVDAIVKASELPLSIVLVGVGDG 275 (407)
Q Consensus 253 TidaIv~AS~lPLSII~VGVGd~ 275 (407)
+.+++..|-..-+-|.-||||+.
T Consensus 121 ~~~~~~~~k~~gv~v~~Vgvg~~ 143 (177)
T cd01469 121 LKDVIPQAEREGIIRYAIGVGGH 143 (177)
T ss_pred cHHHHHHHHHCCcEEEEEEeccc
Confidence 23445555568899999999984
No 38
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=97.52 E-value=0.0013 Score=64.98 Aligned_cols=138 Identities=20% Similarity=0.334 Sum_probs=91.2
Q ss_pred eceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeecCCCCCCCCccccCCCCCc
Q 015418 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRF 180 (407)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD~Dk~iPvfGFGa~~t~~~~vFsf~~~~p~ 180 (407)
.++++|||-|+||...+ ..++..+ |+..|.+.+..... +.+-+..||.... .+.+|+. ++
T Consensus 61 ~qIvlaID~S~SM~~~~-------------~~~~ale-ak~lIs~al~~Le~-g~vgVv~Fg~~~~---~v~Plt~--d~ 120 (266)
T cd01460 61 YQILIAIDDSKSMSENN-------------SKKLALE-SLCLVSKALTLLEV-GQLGVCSFGEDVQ---ILHPFDE--QF 120 (266)
T ss_pred ceEEEEEecchhccccc-------------ccccHHH-HHHHHHHHHHhCcC-CcEEEEEeCCCce---EeCCCCC--Cc
Confidence 57999999999996421 1345665 88888888877775 6899999998642 1234421 11
Q ss_pred cCCHHHHHHHHHhhCCceeec-CCCChHHHHHHHHHHHHhcC-----C-ccEEEEEEeCCccccccccccCCCChhHHHH
Q 015418 181 CYGFEEVLSRYREIVPNLKLA-GPTSFAPVIEMAMSIVEQSG-----G-QYHVLLIIADGQVTRSVDTVRGCLSPQEQKT 253 (407)
Q Consensus 181 c~G~egVl~aYr~~l~~v~Ls-GPT~FAPVI~~ai~ive~s~-----~-~Y~VLLIITDG~Itds~d~~~~~l~~d~~eT 253 (407)
- . ++.-+++....+. +-|+.+..|+.++++.++.. + .-.++|||+||.-.+. +...
T Consensus 121 ~-~-----~a~~~~l~~~~f~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~-----------e~~~ 183 (266)
T cd01460 121 S-S-----QSGPRILNQFTFQQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFS-----------EGAQ 183 (266)
T ss_pred h-h-----hHHHHHhCcccCCCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccC-----------ccHH
Confidence 1 1 1122233322232 45999999999999876541 1 1278899999983321 2333
Q ss_pred HHHHHHhcCCCcEEEEEeccCC
Q 015418 254 VDAIVKASELPLSIVLVGVGDG 275 (407)
Q Consensus 254 idaIv~AS~lPLSII~VGVGd~ 275 (407)
..++.+|.+..+.+++|||=+.
T Consensus 184 ~~~~r~a~e~~i~l~~I~ld~~ 205 (266)
T cd01460 184 KVRLREAREQNVFVVFIIIDNP 205 (266)
T ss_pred HHHHHHHHHcCCeEEEEEEcCC
Confidence 4558888899999999999765
No 39
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=97.22 E-value=0.01 Score=55.64 Aligned_cols=162 Identities=12% Similarity=0.233 Sum_probs=100.1
Q ss_pred ceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc---cCCCCccceEeecCCCCCC----CCcccc
Q 015418 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAV---FDEDNLIPCYGFGDASTHD----QDVFSF 174 (407)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~---yD~Dk~iPvfGFGa~~t~~----~~vFsf 174 (407)
.++++||.|.||... .. +..++..+.|++.+..+++. ....-.+-++.||...+.. .+|+.+
T Consensus 3 ~ivf~iDvS~SM~~~-------~~----~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~~~~~~~i~v~ 71 (218)
T cd01458 3 SVVFLVDVSPSMFES-------KD----GEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKNPVGYENIYVL 71 (218)
T ss_pred EEEEEEeCCHHHcCC-------CC----CCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCCcCCCCceEEe
Confidence 479999999999621 00 11267999999999999997 6666699999999875432 234333
Q ss_pred CCCCCccCCHHHHHHHHHhhCCcee--------ecCCCChHHHHHHHHHHHHhcC-Ccc-EEEEEEeCCccccccccccC
Q 015418 175 YSGGRFCYGFEEVLSRYREIVPNLK--------LAGPTSFAPVIEMAMSIVEQSG-GQY-HVLLIIADGQVTRSVDTVRG 244 (407)
Q Consensus 175 ~~~~p~c~G~egVl~aYr~~l~~v~--------LsGPT~FAPVI~~ai~ive~s~-~~Y-~VLLIITDG~Itds~d~~~~ 244 (407)
.|-+ .... +.++...+.+..-. -.+.|.+..+|..+.++..+.. ... -.+++||||.-.- +
T Consensus 72 ~~l~--~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~~~~~~~k~IvL~TDg~~p~------~ 142 (218)
T cd01458 72 LDLD--TPGA-ERVEDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKGKKKKSHKRIFLFTNNDDPH------G 142 (218)
T ss_pred ecCC--CCCH-HHHHHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhccccccccEEEEECCCCCCC------C
Confidence 2211 1122 23334444332211 2457899999999998877521 122 4578999996320 0
Q ss_pred CCChhHHHHHHHHHHhcCCCcEEEEEeccCCC--ccccccc
Q 015418 245 CLSPQEQKTVDAIVKASELPLSIVLVGVGDGP--WDMMKEF 283 (407)
Q Consensus 245 ~l~~d~~eTidaIv~AS~lPLSII~VGVGd~~--F~~M~~L 283 (407)
.=.....+..+.+.+..+.-+.|.+||||..+ |+..+..
T Consensus 143 ~~~~~~~~~~~~a~~l~~~gI~i~~i~i~~~~~~f~~~~fy 183 (218)
T cd01458 143 GDSIKDSQAAVKAEDLKDKGIELELFPLSSPGKKFDVSKFY 183 (218)
T ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEecCCCCCCCChhHHH
Confidence 00001344556666777789999999999754 5544333
No 40
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.20 E-value=0.0047 Score=67.16 Aligned_cols=159 Identities=15% Similarity=0.222 Sum_probs=100.7
Q ss_pred eceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcc-cccCCCCccceEeecCCCCCCCCccccCCCCC
Q 015418 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTL-AVFDEDNLIPCYGFGDASTHDQDVFSFYSGGR 179 (407)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL-~~yD~Dk~iPvfGFGa~~t~~~~vFsf~~~~p 179 (407)
..++++||.|+||. .+....|-..+..+| ..|-..-.+-++.|+..... .++..
T Consensus 402 ~~vvfvvD~SGSM~------------------~~rl~~aK~a~~~ll~~ay~~rD~v~lI~F~g~~a~--~~lpp----- 456 (584)
T PRK13406 402 TTTIFVVDASGSAA------------------LHRLAEAKGAVELLLAEAYVRRDQVALVAFRGRGAE--LLLPP----- 456 (584)
T ss_pred ccEEEEEECCCCCc------------------HhHHHHHHHHHHHHHHhhcCCCCEEEEEEECCCcee--EEcCC-----
Confidence 67999999999983 124444445555545 34666668999999654221 11121
Q ss_pred ccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc--CCccEEEEEEeCCccccccccccCCCChhHHHHHHHH
Q 015418 180 FCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS--GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAI 257 (407)
Q Consensus 180 ~c~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~s--~~~Y~VLLIITDG~Itds~d~~~~~l~~d~~eTidaI 257 (407)
...++.+ ++.+..+.-.|-|.++.-|..+.+.+++. .+.-.++|+||||..+...+..-|. .....+...+.
T Consensus 457 -T~~~~~~----~~~L~~l~~gGgTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~-~~~~~~~~~~a 530 (584)
T PRK13406 457 -TRSLVRA----KRSLAGLPGGGGTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGTAGR-AQAEEDALAAA 530 (584)
T ss_pred -CcCHHHH----HHHHhcCCCCCCChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCccccccc-cchhhHHHHHH
Confidence 1234443 34455677789999999999999887654 2334778999999976422211111 11234455666
Q ss_pred HHhcCCCcEEEEEeccCCCcccccccCCCCCCc
Q 015418 258 VKASELPLSIVLVGVGDGPWDMMKEFDDNIPAR 290 (407)
Q Consensus 258 v~AS~lPLSII~VGVGd~~F~~M~~LDd~l~~R 290 (407)
..+...-+.+++|++|......|++|-+.+.++
T Consensus 531 ~~~~~~gi~~~vId~g~~~~~~~~~LA~~~gg~ 563 (584)
T PRK13406 531 RALRAAGLPALVIDTSPRPQPQARALAEAMGAR 563 (584)
T ss_pred HHHHhcCCeEEEEecCCCCcHHHHHHHHhcCCe
Confidence 666677789999999988777787775444443
No 41
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=97.19 E-value=0.0055 Score=66.45 Aligned_cols=159 Identities=14% Similarity=0.170 Sum_probs=93.6
Q ss_pred eceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc-cCCCCccceEeecCCCCCCCCccccCCCCC
Q 015418 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAV-FDEDNLIPCYGFGDASTHDQDVFSFYSGGR 179 (407)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~-yD~Dk~iPvfGFGa~~t~~~~vFsf~~~~p 179 (407)
..+++.||.|+||.. +..+.|-..+..++.. |-..-.+-++.|+..... .++.+
T Consensus 408 ~~v~fvvD~SGSM~~------------------~rl~~aK~av~~Ll~~~~~~~D~v~Li~F~~~~a~--~~lp~----- 462 (589)
T TIGR02031 408 RLLIFVVDASGSAAV------------------ARMSEAKGAVELLLGEAYVHRDQVSLIAFRGTAAE--VLLPP----- 462 (589)
T ss_pred ceEEEEEECCCCCCh------------------HHHHHHHHHHHHHHHhhccCCCEEEEEEECCCCce--EECCC-----
Confidence 448899999999941 2455555555555543 433347999999754311 12222
Q ss_pred ccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcC--CccEEEEEEeCCccccccccccCCCCh---hH-HHH
Q 015418 180 FCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSG--GQYHVLLIIADGQVTRSVDTVRGCLSP---QE-QKT 253 (407)
Q Consensus 180 ~c~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~s~--~~Y~VLLIITDG~Itds~d~~~~~l~~---d~-~eT 253 (407)
-.+.+.+ ++.+..+..+|.|.++.-|..+.+.+++.. ..-.++|+||||.-+-.++.......+ +. ++.
T Consensus 463 -t~~~~~~----~~~L~~l~~gGgTpL~~gL~~A~~~~~~~~~~~~~~~ivllTDG~~nv~~~~~~~~~~~~~~~~~~~~ 537 (589)
T TIGR02031 463 -SRSVEQA----KRRLDVLPGGGGTPLAAGLAAAFQTALQARSSGGTPTIVLITDGRGNIPLDGDPESIKADREQAAEEA 537 (589)
T ss_pred -CCCHHHH----HHHHhcCCCCCCCcHHHHHHHHHHHHHHhcccCCceEEEEECCCCCCCCCCcccccccccchhHHHHH
Confidence 2244443 345677778999999999999999876532 223678999999865322100000010 01 122
Q ss_pred HHHHHHhcCCCcEEEEEeccCCCc--ccccccCCCCCC
Q 015418 254 VDAIVKASELPLSIVLVGVGDGPW--DMMKEFDDNIPA 289 (407)
Q Consensus 254 idaIv~AS~lPLSII~VGVGd~~F--~~M~~LDd~l~~ 289 (407)
..+..+.....+.+++||+|.... +.|++|=+.+.+
T Consensus 538 ~~~a~~~~~~gi~~~vid~~~~~~~~~~~~~lA~~~~g 575 (589)
T TIGR02031 538 LALARKIREAGMPALVIDTAMRFVSTGFAQKLARKMGA 575 (589)
T ss_pred HHHHHHHHhcCCeEEEEeCCCCCccchHHHHHHHhcCC
Confidence 222333345678999999998643 346666443333
No 42
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=97.15 E-value=0.0029 Score=59.58 Aligned_cols=162 Identities=11% Similarity=0.148 Sum_probs=103.9
Q ss_pred ceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCC---CCccceEeecCCCCCCCCccccCCCC
Q 015418 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDE---DNLIPCYGFGDASTHDQDVFSFYSGG 178 (407)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD~---Dk~iPvfGFGa~~t~~~~vFsf~~~~ 178 (407)
-.+|+||.|.|+... +-.+|-++.+...+..++..|-+ ...+=+..|+++.... +.+++.
T Consensus 5 a~vi~lD~S~sM~a~-------------D~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~~a~v--~~plT~-- 67 (187)
T cd01452 5 ATMICIDNSEYMRNG-------------DYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGNSPEV--LVTLTN-- 67 (187)
T ss_pred EEEEEEECCHHHHcC-------------CCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCceEE--EECCCC--
Confidence 379999999998632 11479999999999888744433 3467788888743321 112221
Q ss_pred CccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcC---CccEEEEEEeCCccccccccccCCCChhHHHHHH
Q 015418 179 RFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSG---GQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVD 255 (407)
Q Consensus 179 p~c~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~s~---~~Y~VLLIITDG~Itds~d~~~~~l~~d~~eTid 255 (407)
..+.++. .+..+.+.|.+++...|+.|....+... ..=-|++|++++.-.| +....+
T Consensus 68 ----D~~~~~~----~L~~i~~~g~~~l~~AL~~A~~~L~~~~~~~~~~rivi~v~S~~~~d------------~~~i~~ 127 (187)
T cd01452 68 ----DQGKILS----KLHDVQPKGKANFITGIQIAQLALKHRQNKNQKQRIVAFVGSPIEED------------EKDLVK 127 (187)
T ss_pred ----CHHHHHH----HHHhCCCCCcchHHHHHHHHHHHHhcCCCcCCcceEEEEEecCCcCC------------HHHHHH
Confidence 2333433 3345567799999999999987775432 1225667777664443 455667
Q ss_pred HHHHhcCCCcEEEEEeccCC--CcccccccCCCCCCccccceecccchh
Q 015418 256 AIVKASELPLSIVLVGVGDG--PWDMMKEFDDNIPARAFDNFQFVNFTE 302 (407)
Q Consensus 256 aIv~AS~lPLSII~VGVGd~--~F~~M~~LDd~l~~R~rDNvQFV~f~d 302 (407)
++.++.+..+.+-+||+|+. +=+.|+.|-+.... -||-+||....
T Consensus 128 ~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~~--~~~s~~~~~~~ 174 (187)
T cd01452 128 LAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVNG--KDGSHLVSVPP 174 (187)
T ss_pred HHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhcC--CCCceEEEeCC
Confidence 77778888999999999975 34444444333322 37788887543
No 43
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.09 E-value=0.0068 Score=54.97 Aligned_cols=140 Identities=14% Similarity=0.250 Sum_probs=90.0
Q ss_pred ceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC---CCCccceEeecCCCCCCCCccccCCCC
Q 015418 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD---EDNLIPCYGFGDASTHDQDVFSFYSGG 178 (407)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD---~Dk~iPvfGFGa~~t~~~~vFsf~~~~ 178 (407)
.+++.||-|.|.+ ...++++..-|..++..|+ +.-.+-+.-|+.... ..|.|+..
T Consensus 2 DivfllD~S~Si~------------------~~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~~~---~~~~l~~~- 59 (165)
T cd01481 2 DIVFLIDGSDNVG------------------SGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDTPR---PEFYLNTH- 59 (165)
T ss_pred CEEEEEeCCCCcC------------------HHHHHHHHHHHHHHHhhccCCCCCcEEEEEEecCCee---EEEecccc-
Confidence 5789999988874 2367777777777787777 456788888987642 23555421
Q ss_pred CccCCHHHHHHHHHhhCCceee-cC-CCChHHHHHHHHHHHH-hc------CCccEEEEEEeCCccccccccccCCCChh
Q 015418 179 RFCYGFEEVLSRYREIVPNLKL-AG-PTSFAPVIEMAMSIVE-QS------GGQYHVLLIIADGQVTRSVDTVRGCLSPQ 249 (407)
Q Consensus 179 p~c~G~egVl~aYr~~l~~v~L-sG-PT~FAPVI~~ai~ive-~s------~~~Y~VLLIITDG~Itds~d~~~~~l~~d 249 (407)
...++++++-.+ ++. .| .|+-...|+.+.+.+- .. .+--.||++||||.-+| +
T Consensus 60 ---~~~~~l~~~i~~----i~~~~g~~t~t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~d-----------~ 121 (165)
T cd01481 60 ---STKADVLGAVRR----LRLRGGSQLNTGSALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQD-----------D 121 (165)
T ss_pred ---CCHHHHHHHHHh----cccCCCCcccHHHHHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCcc-----------h
Confidence 134566655443 332 45 4788888888876542 11 12357899999998765 2
Q ss_pred HHHHHHHHHHhcCCCcEEEEEeccCCCcccccccC
Q 015418 250 EQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFD 284 (407)
Q Consensus 250 ~~eTidaIv~AS~lPLSII~VGVGd~~F~~M~~LD 284 (407)
..+..+.+.+ .-+-|+.||+|..+...|+.+-
T Consensus 122 ~~~~a~~lr~---~gv~i~~vG~~~~~~~eL~~ia 153 (165)
T cd01481 122 VERPAVALKR---AGIVPFAIGARNADLAELQQIA 153 (165)
T ss_pred HHHHHHHHHH---CCcEEEEEeCCcCCHHHHHHHh
Confidence 3344444544 4577888888866666555554
No 44
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=96.99 E-value=0.0091 Score=58.21 Aligned_cols=136 Identities=18% Similarity=0.195 Sum_probs=79.1
Q ss_pred cceeceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc-cCCCCccceEeecCCCCCCCCccccCC
Q 015418 98 LESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAV-FDEDNLIPCYGFGDASTHDQDVFSFYS 176 (407)
Q Consensus 98 le~~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~-yD~Dk~iPvfGFGa~~t~~~~vFsf~~ 176 (407)
.. +++++.||.|+|+. +..+.|...+..++.. +..+..+-++.|+..... ++.|.
T Consensus 52 ~p-~~vvlvlD~SgSM~-------------------~~~~~a~~a~~~~l~~~l~~~d~v~lv~f~~~~~~---~~~~t- 107 (296)
T TIGR03436 52 LP-LTVGLVIDTSGSMR-------------------NDLDRARAAAIRFLKTVLRPNDRVFVVTFNTRLRL---LQDFT- 107 (296)
T ss_pred CC-ceEEEEEECCCCch-------------------HHHHHHHHHHHHHHHhhCCCCCEEEEEEeCCceeE---eecCC-
Confidence 34 68999999999994 1244555555555654 566788999999976432 22332
Q ss_pred CCCccCCHHHHHHHHHhhCC-----------ceeecCCCChHHHHHHHH-HHHHhcC----CccEEEEEEeCCccccccc
Q 015418 177 GGRFCYGFEEVLSRYREIVP-----------NLKLAGPTSFAPVIEMAM-SIVEQSG----GQYHVLLIIADGQVTRSVD 240 (407)
Q Consensus 177 ~~p~c~G~egVl~aYr~~l~-----------~v~LsGPT~FAPVI~~ai-~ive~s~----~~Y~VLLIITDG~Itds~d 240 (407)
...+.+.++-.+.-+ .+...|.|+...-|..++ +...+.. +. -++|+||||.-+.+
T Consensus 108 -----~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~g~T~l~~al~~aa~~~~~~~~~~~p~r-k~iIllTDG~~~~~-- 179 (296)
T TIGR03436 108 -----SDPRLLEAALNRLKPPLRTDYNSSGAFVRDGGGTALYDAITLAALEQLANALAGIPGR-KALIVISDGGDNRS-- 179 (296)
T ss_pred -----CCHHHHHHHHHhccCCCccccccccccccCCCcchhHHHHHHHHHHHHHHhhcCCCCC-eEEEEEecCCCcch--
Confidence 123444444333222 123367788777765554 3333221 22 57899999965431
Q ss_pred cccCCCChhHHHHHHHHHHhcCCCcEEEEEeccC
Q 015418 241 TVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGD 274 (407)
Q Consensus 241 ~~~~~l~~d~~eTidaIv~AS~lPLSII~VGVGd 274 (407)
.....+++..+.+.-+.|..||+|+
T Consensus 180 ---------~~~~~~~~~~~~~~~v~vy~I~~~~ 204 (296)
T TIGR03436 180 ---------RDTLERAIDAAQRADVAIYSIDARG 204 (296)
T ss_pred ---------HHHHHHHHHHHHHcCCEEEEeccCc
Confidence 1222233333445678888888875
No 45
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=96.91 E-value=0.0059 Score=57.86 Aligned_cols=157 Identities=14% Similarity=0.135 Sum_probs=88.4
Q ss_pred ceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeecCCCCCCCCccccCCCCCcc
Q 015418 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRFC 181 (407)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD~Dk~iPvfGFGa~~t~~~~vFsf~~~~p~c 181 (407)
++++|||.|+||.. |+ . .++..-.-..|...+.+.+..|.+.......||++...... ...+ +.|.-
T Consensus 2 ~l~lavDlSgSM~~-----~~----~-~dg~~~~RL~a~k~v~~~f~~f~~~r~~DriG~~g~~~~~~-~lt~--d~p~t 68 (191)
T cd01455 2 RLKLVVDVSGSMYR-----FN----G-YDGRLDRSLEAVVMVMEAFDGFEDKIQYDIIGHSGDGPCVP-FVKT--NHPPK 68 (191)
T ss_pred ceEEEEECcHhHHH-----Hh----c-cCCccccHHHHHHHHHHHHHHHHHhCccceeeecCcccccC-cccc--ccCcc
Confidence 68999999999952 21 0 12222234445555555555556777777888876542211 1122 22222
Q ss_pred CCHH--HHHHHHHhhCCceeecCCCChHHHHHHHHHHHH-hcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHH
Q 015418 182 YGFE--EVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVE-QSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIV 258 (407)
Q Consensus 182 ~G~e--gVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive-~s~~~Y~VLLIITDG~Itds~d~~~~~l~~d~~eTidaIv 258 (407)
..-+ +++...-.- -++-+.|+.-= .-|..+++..+ ++..+=-|+++||||.-+. +.++|.+. |-.
T Consensus 69 ~d~~~~~~l~~~l~~-~q~g~ag~~Ta-dAi~~av~rl~~~~~a~~kvvILLTDG~n~~------~~i~P~~a----Aa~ 136 (191)
T cd01455 69 NNKERLETLKMMHAH-SQFCWSGDHTV-EATEFAIKELAAKEDFDEAIVIVLSDANLER------YGIQPKKL----ADA 136 (191)
T ss_pred cchhHHHHHHHHHHh-cccCccCccHH-HHHHHHHHHHHhcCcCCCcEEEEEeCCCcCC------CCCChHHH----HHH
Confidence 2222 233222221 13345676333 88888888877 6655556889999998654 44555321 123
Q ss_pred HhcCCCcEEEEEeccCCCccccccc
Q 015418 259 KASELPLSIVLVGVGDGPWDMMKEF 283 (407)
Q Consensus 259 ~AS~lPLSII~VGVGd~~F~~M~~L 283 (407)
-|.+.-+=|-.||||..+.+.++.+
T Consensus 137 lA~~~gV~iytIgiG~~d~~~l~~i 161 (191)
T cd01455 137 LAREPNVNAFVIFIGSLSDEADQLQ 161 (191)
T ss_pred HHHhCCCEEEEEEecCCCHHHHHHH
Confidence 3556777778888887655555544
No 46
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=96.68 E-value=0.029 Score=61.36 Aligned_cols=141 Identities=16% Similarity=0.205 Sum_probs=86.4
Q ss_pred eceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhccc-ccCCCCccceEeecCCCCCCCCccccCCCCC
Q 015418 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLA-VFDEDNLIPCYGFGDASTHDQDVFSFYSGGR 179 (407)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~-~yD~Dk~iPvfGFGa~~t~~~~vFsf~~~~p 179 (407)
..++++||.|+||.. .+..+.|...+..++. .|-..-.+-+++|++.... .++.+
T Consensus 466 ~~vv~vvD~SgSM~~-----------------~~rl~~ak~a~~~ll~~a~~~~D~v~lI~F~g~~a~--~~~p~----- 521 (633)
T TIGR02442 466 NLVIFVVDASGSMAA-----------------RGRMAAAKGAVLSLLRDAYQKRDKVALITFRGEEAE--VLLPP----- 521 (633)
T ss_pred ceEEEEEECCccCCC-----------------ccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCce--EEcCC-----
Confidence 468999999999951 1355666666666553 4656678999999753211 12222
Q ss_pred ccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHh----cCCccEEEEEEeCCccccccccccCCCChhHHHHHH
Q 015418 180 FCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQ----SGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVD 255 (407)
Q Consensus 180 ~c~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~----s~~~Y~VLLIITDG~Itds~d~~~~~l~~d~~eTid 255 (407)
-.+.+.+. +.+..+...|.|.++.-|..+.+.+.. ....=.++|+||||.-+.+ +. + ..-.++..+
T Consensus 522 -t~~~~~~~----~~L~~l~~gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~-~~--~--~~~~~~~~~ 591 (633)
T TIGR02442 522 -TSSVELAA----RRLEELPTGGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVA-DG--G--EPPTDDART 591 (633)
T ss_pred -CCCHHHHH----HHHHhCCCCCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCC-CC--C--CChHHHHHH
Confidence 12343332 344556678999999999999988773 2223467799999986542 10 0 011233333
Q ss_pred HHHHhcCCCcEEEEEeccCC
Q 015418 256 AIVKASELPLSIVLVGVGDG 275 (407)
Q Consensus 256 aIv~AS~lPLSII~VGVGd~ 275 (407)
+-....+..+-+++|+.+.+
T Consensus 592 ~a~~l~~~~i~~~vIdt~~~ 611 (633)
T TIGR02442 592 IAAKLAARGILFVVIDTESG 611 (633)
T ss_pred HHHHHHhcCCeEEEEeCCCC
Confidence 33333445778888888764
No 47
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=96.54 E-value=0.027 Score=53.61 Aligned_cols=121 Identities=17% Similarity=0.173 Sum_probs=72.0
Q ss_pred eceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhh-cccccCCCCccceEeecCCCCCCCCccccCCCCC
Q 015418 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGK-TLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGR 179 (407)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~-vL~~yD~Dk~iPvfGFGa~~t~~~~vFsf~~~~p 179 (407)
..++|.+|.|+||. .|...+..+.. +...+ ..+-+|-|+.........+ .
T Consensus 58 ~~lvvl~DvSGSM~--------------------~~s~~~l~~~~~l~~~~---~~~~~f~F~~~l~~vT~~l--~---- 108 (222)
T PF05762_consen 58 RRLVVLCDVSGSMA--------------------GYSEFMLAFLYALQRQF---RRVRVFVFSTRLTEVTPLL--R---- 108 (222)
T ss_pred ccEEEEEeCCCChH--------------------HHHHHHHHHHHHHHHhC---CCEEEEEEeeehhhhhhhh--c----
Confidence 37999999999995 23333332222 22222 2788999998654322111 1
Q ss_pred ccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHH
Q 015418 180 FCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVK 259 (407)
Q Consensus 180 ~c~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~s~~~Y~VLLIITDG~Itds~d~~~~~l~~d~~eTidaIv~ 259 (407)
..+.++++..-..... .++|.|++...++++.+......-.-.++|||+||.-++ ..+...+.++.|.+
T Consensus 109 -~~~~~~~l~~~~~~~~--~~~GgTdi~~aL~~~~~~~~~~~~~~t~vvIiSDg~~~~--------~~~~~~~~l~~l~~ 177 (222)
T PF05762_consen 109 -RRDPEEALARLSALVQ--SFGGGTDIGQALREFLRQYARPDLRRTTVVIISDGWDTN--------DPEPLAEELRRLRR 177 (222)
T ss_pred -cCCHHHHHHHHHhhcc--CCCCccHHHHHHHHHHHHhhcccccCcEEEEEecccccC--------ChHHHHHHHHHHHH
Confidence 1234455544433332 389999999999999988764322457889999994332 12334555555555
Q ss_pred hc
Q 015418 260 AS 261 (407)
Q Consensus 260 AS 261 (407)
..
T Consensus 178 r~ 179 (222)
T PF05762_consen 178 RG 179 (222)
T ss_pred hC
Confidence 43
No 48
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=96.10 E-value=0.041 Score=62.42 Aligned_cols=142 Identities=13% Similarity=0.157 Sum_probs=84.8
Q ss_pred ceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeecCCCCCCCCccccCCCCCcc
Q 015418 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRFC 181 (407)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD~Dk~iPvfGFGa~~t~~~~vFsf~~~~p~c 181 (407)
.++++||.|+||... + ..+..++|++.+. ++.+..+-.+-++.|+....-.. .|.+-.
T Consensus 306 ~VVLVLDvSGSM~g~-------d-------RL~~lkqAA~~fL--~~~l~~~DrVGLVtFsssA~vl~---pLt~It--- 363 (863)
T TIGR00868 306 IVCLVLDKSGSMTVE-------D-------RLKRMNQAAKLFL--LQTVEKGSWVGMVTFDSAAYIKN---ELIQIT--- 363 (863)
T ss_pred eEEEEEECCcccccc-------C-------HHHHHHHHHHHHH--HHhCCCCCEEEEEEECCceeEee---ccccCC---
Confidence 388999999999521 0 1234555655442 22244566899999998643211 221110
Q ss_pred CCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCC--ccEEEEEEeCCccccccccccCCCChhHHHHHHHHHH
Q 015418 182 YGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGG--QYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVK 259 (407)
Q Consensus 182 ~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~s~~--~Y~VLLIITDG~Itds~d~~~~~l~~d~~eTidaIv~ 259 (407)
. ....++-...++ ....|-|++..-|+++.+..++... .=-++++||||.-++ ..+ ++..
T Consensus 364 -s-~~dr~aL~~~L~-~~A~GGT~I~~GL~~Alq~L~~~~~~~~~~~IILLTDGedn~------------~~~---~l~~ 425 (863)
T TIGR00868 364 -S-SAERDALTANLP-TAASGGTSICSGLKAAFQVIKKSYQSTDGSEIVLLTDGEDNT------------ISS---CFEE 425 (863)
T ss_pred -c-HHHHHHHHHhhc-cccCCCCcHHHHHHHHHHHHHhcccccCCCEEEEEeCCCCCC------------HHH---HHHH
Confidence 1 112233333444 3467899999999999999876432 123568889998543 223 3334
Q ss_pred hcCCCcEEEEEeccCCCccccccc
Q 015418 260 ASELPLSIVLVGVGDGPWDMMKEF 283 (407)
Q Consensus 260 AS~lPLSII~VGVGd~~F~~M~~L 283 (407)
+....+-|-.||+|...=..|++|
T Consensus 426 lk~~gVtI~TIg~G~dad~~L~~I 449 (863)
T TIGR00868 426 VKQSGAIIHTIALGPSAAKELEEL 449 (863)
T ss_pred HHHcCCEEEEEEeCCChHHHHHHH
Confidence 445688899999997654445544
No 49
>PRK10997 yieM hypothetical protein; Provisional
Probab=96.06 E-value=0.11 Score=55.72 Aligned_cols=143 Identities=16% Similarity=0.155 Sum_probs=82.9
Q ss_pred eceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHH-HHHhhcccccCCCCccceEeecCCCCCCCCccccCCCCC
Q 015418 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAI-SIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGR 179 (407)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI-~~Ig~vL~~yD~Dk~iPvfGFGa~~t~~~~vFsf~~~~p 179 (407)
-.++|.||.|+||. |. +-.|.+|+ -.++.++.. .+..+-++.|++..... .+ +
T Consensus 324 GpiII~VDtSGSM~--G~--------------ke~~AkalAaAL~~iAl~--q~dr~~li~Fs~~i~~~----~l----~ 377 (487)
T PRK10997 324 GPFIVCVDTSGSMG--GF--------------NEQCAKAFCLALMRIALA--ENRRCYIMLFSTEVVTY----EL----T 377 (487)
T ss_pred CcEEEEEECCCCCC--CC--------------HHHHHHHHHHHHHHHHHh--cCCCEEEEEecCCceee----cc----C
Confidence 46999999999994 21 12555553 333333322 23346688898754321 12 1
Q ss_pred ccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHH
Q 015418 180 FCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVK 259 (407)
Q Consensus 180 ~c~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~s~~~Y~VLLIITDG~Itds~d~~~~~l~~d~~eTidaIv~ 259 (407)
.-.|+..+++.-.. .++|.|++++.++.+++.+++..-.=..+|||+|+..... +.+..+.++.+.+
T Consensus 378 ~~~gl~~ll~fL~~-----~f~GGTDl~~aL~~al~~l~~~~~r~adIVVISDF~~~~~--------~eel~~~L~~Lk~ 444 (487)
T PRK10997 378 GPDGLEQAIRFLSQ-----SFRGGTDLAPCLRAIIEKMQGREWFDADAVVISDFIAQRL--------PDELVAKVKELQR 444 (487)
T ss_pred CccCHHHHHHHHHH-----hcCCCCcHHHHHHHHHHHHcccccCCceEEEECCCCCCCC--------hHHHHHHHHHHHH
Confidence 23577777665433 2589999999999999887654212256899999964321 1123444455555
Q ss_pred hcCCCcEEEEEeccC-CCcccccccC
Q 015418 260 ASELPLSIVLVGVGD-GPWDMMKEFD 284 (407)
Q Consensus 260 AS~lPLSII~VGVGd-~~F~~M~~LD 284 (407)
....=+.-+.| |+ ++=+.|+.||
T Consensus 445 ~~~~rf~~l~i--~~~~~p~l~~ifD 468 (487)
T PRK10997 445 QHQHRFHAVAM--SAHGKPGIMRIFD 468 (487)
T ss_pred hcCcEEEEEEe--CCCCCchHHHhcC
Confidence 44444444444 43 3323466665
No 50
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=91.61 E-value=1.9 Score=45.81 Aligned_cols=130 Identities=17% Similarity=0.171 Sum_probs=81.7
Q ss_pred ceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHH-HHHhhcccccCCCCccceEeecCCCCCCCCccccCCCCCc
Q 015418 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAI-SIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRF 180 (407)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI-~~Ig~vL~~yD~Dk~iPvfGFGa~~t~~~~vFsf~~~~p~ 180 (407)
-++|-||-|+||.-. +=+..+|+ -++.+++.. +++.+-++-|-.. ++.. ...+.
T Consensus 274 pvilllD~SGSM~G~----------------~e~~AKAvalAl~~~ala--enR~~~~~lF~s~------~~~~-el~~k 328 (437)
T COG2425 274 PVILLLDKSGSMSGF----------------KEQWAKAVALALMRIALA--ENRDCYVILFDSE------VIEY-ELYEK 328 (437)
T ss_pred CEEEEEeCCCCcCCc----------------HHHHHHHHHHHHHHHHHH--hccceEEEEeccc------ceee-eecCC
Confidence 699999999999521 11333332 233333333 3456888888662 2221 12344
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcC-CccEEEEEEeCCccccccccccCCCChhHHHHHHHHHH
Q 015418 181 CYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSG-GQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVK 259 (407)
Q Consensus 181 c~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~s~-~~Y~VLLIITDG~Itds~d~~~~~l~~d~~eTidaIv~ 259 (407)
..+++++++---. .+.|.|+|...|..|++.+++.. .+ .=||+||||.-.. +.+....++.+.+
T Consensus 329 ~~~~~e~i~fL~~-----~f~GGTD~~~~l~~al~~~k~~~~~~-adiv~ITDg~~~~---------~~~~~~~v~e~~k 393 (437)
T COG2425 329 KIDIEELIEFLSY-----VFGGGTDITKALRSALEDLKSRELFK-ADIVVITDGEDER---------LDDFLRKVKELKK 393 (437)
T ss_pred ccCHHHHHHHHhh-----hcCCCCChHHHHHHHHHHhhcccccC-CCEEEEeccHhhh---------hhHHHHHHHHHHH
Confidence 5688887753322 34455999999999999988653 23 4469999996432 1246778888888
Q ss_pred hcCCCcEEEEEe
Q 015418 260 ASELPLSIVLVG 271 (407)
Q Consensus 260 AS~lPLSII~VG 271 (407)
+++.=+--|+||
T Consensus 394 ~~~~rl~aV~I~ 405 (437)
T COG2425 394 RRNARLHAVLIG 405 (437)
T ss_pred HhhceEEEEEec
Confidence 888776666654
No 51
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=91.56 E-value=3.1 Score=41.58 Aligned_cols=145 Identities=14% Similarity=0.228 Sum_probs=92.1
Q ss_pred CcceeceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhh-cccccCCCCccceEeecCCCCCCCCccccC
Q 015418 97 GLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGK-TLAVFDEDNLIPCYGFGDASTHDQDVFSFY 175 (407)
Q Consensus 97 Gle~~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~-vL~~yD~Dk~iPvfGFGa~~t~~~~vFsf~ 175 (407)
|=...=++++||-|+||.-. + --+.|=-.+.. +-..|-.-.++-+.+|=.... ++ -+.
T Consensus 75 ~r~g~lvvfvVDASgSM~~~----------~-------Rm~aaKG~~~~lL~dAYq~RdkvavI~F~G~~A---~l-ll~ 133 (261)
T COG1240 75 GRAGNLIVFVVDASGSMAAR----------R-------RMAAAKGAALSLLRDAYQRRDKVAVIAFRGEKA---EL-LLP 133 (261)
T ss_pred cCcCCcEEEEEeCcccchhH----------H-------HHHHHHHHHHHHHHHHHHccceEEEEEecCCcc---eE-EeC
Confidence 33434588999999999621 0 12222222222 234566667888888854321 11 111
Q ss_pred CCCCccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcC----CccEEEEEEeCCccccccccccCCCChhHH
Q 015418 176 SGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSG----GQYHVLLIIADGQVTRSVDTVRGCLSPQEQ 251 (407)
Q Consensus 176 ~~~p~c~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~s~----~~Y~VLLIITDG~Itds~d~~~~~l~~d~~ 251 (407)
|. ..++.+ .+.|..+.-.|-|-.++-|.++.++..+.. ..-.|+|+||||..++... +++ +.
T Consensus 134 pT----~sv~~~----~~~L~~l~~GG~TPL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~-----~~~-~~ 199 (261)
T COG1240 134 PT----SSVELA----ERALERLPTGGKTPLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIP-----LGP-KA 199 (261)
T ss_pred Cc----ccHHHH----HHHHHhCCCCCCCchHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCC-----Cch-HH
Confidence 11 234333 344555667899999999999999875442 3457889999999765321 222 67
Q ss_pred HHHHHHHHhcCCCcEEEEEeccCCC
Q 015418 252 KTVDAIVKASELPLSIVLVGVGDGP 276 (407)
Q Consensus 252 eTidaIv~AS~lPLSII~VGVGd~~ 276 (407)
++.++-.+....++-+++|......
T Consensus 200 e~~~~a~~~~~~g~~~lvid~e~~~ 224 (261)
T COG1240 200 ETLEAASKLRLRGIQLLVIDTEGSE 224 (261)
T ss_pred HHHHHHHHHhhcCCcEEEEecCCcc
Confidence 8888888888899988999887765
No 52
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=85.52 E-value=5.5 Score=38.44 Aligned_cols=141 Identities=18% Similarity=0.258 Sum_probs=76.7
Q ss_pred eceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc--cC-CCCccceEeecCCCC---CCCCcccc
Q 015418 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAV--FD-EDNLIPCYGFGDAST---HDQDVFSF 174 (407)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~--yD-~Dk~iPvfGFGa~~t---~~~~vFsf 174 (407)
+-+++-+|.++|+. ++.+|... . .|..+...|.+ |- .--.+-+.-||.... +..++-+|
T Consensus 4 lP~~lllDtSgSM~--------Ge~IealN----~---Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~pf~~~~nF 68 (207)
T COG4245 4 LPCYLLLDTSGSMI--------GEPIEALN----A---GLQMMIDTLKQDPYALERVELSIVTFGGPARVIQPFTDAANF 68 (207)
T ss_pred CCEEEEEecCcccc--------cccHHHHH----H---HHHHHHHHHHhChhhhheeEEEEEEecCcceEEechhhHhhc
Confidence 34788999999984 34666532 2 22222222221 10 123467788885321 11122233
Q ss_pred CCCCCccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc--------CCcc-EEEEEEeCCccccccccccCC
Q 015418 175 YSGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS--------GGQY-HVLLIIADGQVTRSVDTVRGC 245 (407)
Q Consensus 175 ~~~~p~c~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~s--------~~~Y-~VLLIITDG~Itds~d~~~~~ 245 (407)
+ .|.+...|-|...-.|+.+++++++. .+.| .+..+||||..+|.-
T Consensus 69 ~-------------------~p~L~a~GgT~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~PtD~w------ 123 (207)
T COG4245 69 N-------------------PPILTAQGGTPLGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEPTDDW------ 123 (207)
T ss_pred C-------------------CCceecCCCCchHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCcchHH------
Confidence 2 34455668899999999999888643 2345 455789999998710
Q ss_pred CChhHHHHHHHHHHhcCCCcEEEEEeccCCCcccccccC
Q 015418 246 LSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFD 284 (407)
Q Consensus 246 l~~d~~eTidaIv~AS~lPLSII~VGVGd~~F~~M~~LD 284 (407)
++..++-.--+++.--+-+..||+-..+-..++++-
T Consensus 124 ---~~~~~~~~~~~~~~k~v~a~~~G~~~ad~~~L~qit 159 (207)
T COG4245 124 ---QAGAALVFQGERRAKSVAAFSVGVQGADNKTLNQIT 159 (207)
T ss_pred ---HhHHHHhhhcccccceEEEEEecccccccHHHHHHH
Confidence 122223333333334444444444445666666554
No 53
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=84.78 E-value=13 Score=34.60 Aligned_cols=157 Identities=13% Similarity=0.149 Sum_probs=77.6
Q ss_pred eEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc---cCCCCccceEeecCCCCCC-------CCcc
Q 015418 103 LIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAV---FDEDNLIPCYGFGDASTHD-------QDVF 172 (407)
Q Consensus 103 liVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~---yD~Dk~iPvfGFGa~~t~~-------~~vF 172 (407)
+++.||.+.|+.... -+. ..+.+.|++.|-.+++. ....-.+-|+.||...+.+ .+|+
T Consensus 2 ~vflID~s~sM~~~~-----------~~~-~~~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~~~~~~~~~i~ 69 (224)
T PF03731_consen 2 TVFLIDVSPSMFEPS-----------SES-ESPLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNPDEDSGYENIF 69 (224)
T ss_dssp EEEEEE-SCGGGS-B-----------TTC-S-HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST-TTT-STTEE
T ss_pred EEEEEECCHHHCCCC-----------CCc-chhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCcccccCCCceE
Confidence 689999999996321 111 11677777777766543 3334579999999876644 3344
Q ss_pred ccCCCCCccCCHHHHHHHHHhhCCc-------eeecCCCChHHHHHHHHHHHHh--cCCcc--EEEEEEeCCcccccccc
Q 015418 173 SFYSGGRFCYGFEEVLSRYREIVPN-------LKLAGPTSFAPVIEMAMSIVEQ--SGGQY--HVLLIIADGQVTRSVDT 241 (407)
Q Consensus 173 sf~~~~p~c~G~egVl~aYr~~l~~-------v~LsGPT~FAPVI~~ai~ive~--s~~~Y--~VLLIITDG~Itds~d~ 241 (407)
.+.+-+. -.++.+.+. .+.+.. ..-.....+..++-.++.+..+ ...++ --+++|||+.--.
T Consensus 70 ~l~~l~~--~~~~~l~~L-~~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l~Td~d~p~---- 142 (224)
T PF03731_consen 70 VLQPLDP--PSAERLKEL-EELLKPGDKFENFFSGSDEGDLSDALWVASDMFRERTCKKKKNKKRIFLFTDNDGPH---- 142 (224)
T ss_dssp EEEECC----BHHHHHHH-HTTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHCTTS-ECEEEEEEEES-SSTT----
T ss_pred EeecCCc--cCHHHHHHH-HHhhcccccccccCCCCCccCHHHHHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCC----
Confidence 4432221 123332211 111111 0012345677777777777654 23333 3467899875221
Q ss_pred ccCCCChhHHHHHHH--HHHhcCCCcEEEEEeccC-CCccccc
Q 015418 242 VRGCLSPQEQKTVDA--IVKASELPLSIVLVGVGD-GPWDMMK 281 (407)
Q Consensus 242 ~~~~l~~d~~eTida--Iv~AS~lPLSII~VGVGd-~~F~~M~ 281 (407)
. -..+.+.+++- +.+....-+.|.++.+.. ..|..-+
T Consensus 143 --~-~~~~~~~~~~~l~~~Dl~~~~i~~~~~~l~~~~~f~~~~ 182 (224)
T PF03731_consen 143 --E-DDDELERIIQKLKAKDLQDNGIEIELFFLPGSDKFDMDK 182 (224)
T ss_dssp --T--CCCHHHHHHHHHHHHHHHHTEEEEEEECT-TT---CCC
T ss_pred --C-CHHHHHHHHHhhccccchhcCcceeEeecCCCCCCChhh
Confidence 0 11245666666 667778888888888833 3344333
No 54
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=67.10 E-value=16 Score=35.73 Aligned_cols=52 Identities=17% Similarity=0.370 Sum_probs=33.0
Q ss_pred CCccEEEEEEeCCcccccc---ccccCCCChhHHHHHHHHHHhcCCCcEEEEEeccC
Q 015418 221 GGQYHVLLIIADGQVTRSV---DTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGD 274 (407)
Q Consensus 221 ~~~Y~VLLIITDG~Itds~---d~~~~~l~~d~~eTidaIv~AS~lPLSII~VGVGd 274 (407)
..+=-||++|+||...|.. +....-|..+++++++.|.. .-++-++-||||.
T Consensus 133 ~e~rkiLiViSDG~P~d~st~~~n~~~~L~~HLr~vi~~ie~--~~~Vel~aiGIg~ 187 (219)
T PF11775_consen 133 PEQRKILIVISDGAPADDSTLSANDGDYLDAHLRQVIAEIET--RSDVELIAIGIGH 187 (219)
T ss_pred CccceEEEEEeCCCcCcccccccCChHHHHHHHHHHHHHHhc--cCCcEEEEEEcCC
Confidence 3444699999999987521 01111355556666666654 3477788888886
No 55
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=65.11 E-value=38 Score=32.58 Aligned_cols=97 Identities=25% Similarity=0.394 Sum_probs=56.9
Q ss_pred cHHHHHHHHHHcCcceeceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeecCC
Q 015418 85 SLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDA 164 (407)
Q Consensus 85 ~ld~V~~aL~~~Gle~~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD~Dk~iPvfGFGa~ 164 (407)
++++| ++|.++|.+ |||+|.|...+ +.+|+ +.-+.|+ +.| +.-+++
T Consensus 53 T~~ev-~~l~~aGad----IIAlDaT~R~R--------p~~l~-------~li~~i~------~~~-------~l~MAD- 98 (192)
T PF04131_consen 53 TLKEV-DALAEAGAD----IIALDATDRPR--------PETLE-------ELIREIK------EKY-------QLVMAD- 98 (192)
T ss_dssp SHHHH-HHHHHCT-S----EEEEE-SSSS---------SS-HH-------HHHHHHH------HCT-------SEEEEE-
T ss_pred CHHHH-HHHHHcCCC----EEEEecCCCCC--------CcCHH-------HHHHHHH------HhC-------cEEeee-
Confidence 78888 788899999 59999997763 13333 2222222 122 333333
Q ss_pred CCCCCCccccCCCCCccCCHHHHHHHHHhhCCce--eecCCCChH----HHHHHHHHHHHhcCCccEEEEEEeCCcccc
Q 015418 165 STHDQDVFSFYSGGRFCYGFEEVLSRYREIVPNL--KLAGPTSFA----PVIEMAMSIVEQSGGQYHVLLIIADGQVTR 237 (407)
Q Consensus 165 ~t~~~~vFsf~~~~p~c~G~egVl~aYr~~l~~v--~LsGPT~FA----PVI~~ai~ive~s~~~Y~VLLIITDG~Itd 237 (407)
|.-+|+.+++.+--+--| .|+|.|.+. |=++.+.++++. + . -+|..|.|+.
T Consensus 99 ----------------ist~ee~~~A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~-~-~----pvIaEGri~t 155 (192)
T PF04131_consen 99 ----------------ISTLEEAINAAELGFDIIGTTLSGYTPYTKGDGPDFELVRELVQA-D-V----PVIAEGRIHT 155 (192)
T ss_dssp -----------------SSHHHHHHHHHTT-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT-T-S----EEEEESS--S
T ss_pred ----------------cCCHHHHHHHHHcCCCEEEcccccCCCCCCCCCCCHHHHHHHHhC-C-C----cEeecCCCCC
Confidence 456788888877655444 488877665 777777777764 2 1 2789999985
No 56
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=61.20 E-value=81 Score=37.67 Aligned_cols=147 Identities=14% Similarity=0.274 Sum_probs=91.2
Q ss_pred eceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeecCCCCCCCCccccCCCCCc
Q 015418 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRF 180 (407)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD~Dk~iPvfGFGa~~t~~~~vFsf~~~~p~ 180 (407)
-.+.|-+|.++|+. | ..+ .-|-..+..+|.-+-+|-.+-+.-|.........|| .+..
T Consensus 226 KdiviLlD~SgSm~--g------~~~----------~lak~tv~~iLdtLs~~Dfvni~tf~~~~~~v~pc~----~~~l 283 (1104)
T KOG2353|consen 226 KDIVILLDVSGSMS--G------LRL----------DLAKQTVNEILDTLSDNDFVNILTFNSEVNPVSPCF----NGTL 283 (1104)
T ss_pred cceEEEEecccccc--c------hhh----------HHHHHHHHHHHHhcccCCeEEEEeeccccCcccccc----cCce
Confidence 46888999999984 1 223 333344455666666677777888876554443342 2233
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhc---------CCccEEEEEEeCCccccccccccCCCChhHH
Q 015418 181 CYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQS---------GGQYHVLLIIADGQVTRSVDTVRGCLSPQEQ 251 (407)
Q Consensus 181 c~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~s---------~~~Y~VLLIITDG~Itds~d~~~~~l~~d~~ 251 (407)
+.+--...+..++.+..+...|-++|.-+.+.|-+..... +-.+.+.++||||...+ -+
T Consensus 284 vqAt~~nk~~~~~~i~~l~~k~~a~~~~~~e~aF~lL~~~n~s~~~~~~~~C~~~iml~tdG~~~~------------~~ 351 (1104)
T KOG2353|consen 284 VQATMRNKKVFKEAIETLDAKGIANYTAALEYAFSLLRDYNDSRANTQRSPCNQAIMLITDGVDEN------------AK 351 (1104)
T ss_pred eecchHHHHHHHHHHhhhccccccchhhhHHHHHHHHHHhccccccccccccceeeEEeecCCccc------------HH
Confidence 4444455666677788888889999999999998775432 11578889999998764 23
Q ss_pred HHHHHHHHhc-CCCcEEEEEeccCCCccccc
Q 015418 252 KTVDAIVKAS-ELPLSIVLVGVGDGPWDMMK 281 (407)
Q Consensus 252 eTidaIv~AS-~lPLSII~VGVGd~~F~~M~ 281 (407)
+..+.-..-. ..-+|=.+||-+..+|..++
T Consensus 352 ~If~~yn~~~~~Vrvftflig~~~~~~~~~~ 382 (1104)
T KOG2353|consen 352 EIFEKYNWPDKKVRVFTFLIGDEVYDLDEIQ 382 (1104)
T ss_pred HHHHhhccCCCceEEEEEEecccccccccch
Confidence 3333222211 12345566666666666654
No 57
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=57.85 E-value=1.2e+02 Score=33.58 Aligned_cols=162 Identities=12% Similarity=0.219 Sum_probs=90.3
Q ss_pred ceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccc---cCCCCccceEeecCCCCCC----CCcccc
Q 015418 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAV---FDEDNLIPCYGFGDASTHD----QDVFSF 174 (407)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~---yD~Dk~iPvfGFGa~~t~~----~~vFsf 174 (407)
-+++.||++.||-.. . ..+ ....+.+.||+.|-.+++. ..+.-+|-|+-||...+.+ .+|+-+
T Consensus 12 ailflIDvs~sM~~~----~--~~~----~~~s~~~~al~~i~~l~q~kIis~~~D~vGivlfgT~~t~n~~~~~~i~v~ 81 (584)
T TIGR00578 12 SLIFLVDASKAMFEE----S--QGE----DELTPFDMSIQCIQSVYTSKIISSDKDLLAVVFYGTEKDKNSVNFKNIYVL 81 (584)
T ss_pred EEEEEEECCHHHcCC----C--cCc----CcCChHHHHHHHHHHHHHhcCCCCCCCeEEEEEEeccCCCCccCCCceEEE
Confidence 599999999999531 0 011 1246777777777665543 5566799999999876642 244333
Q ss_pred CC-CCCccCCHHHHHHHHHhhCCc---------eeecCCCChHHHHHHHHHHHHhcCCcc--EEEEEEeCCccccccccc
Q 015418 175 YS-GGRFCYGFEEVLSRYREIVPN---------LKLAGPTSFAPVIEMAMSIVEQSGGQY--HVLLIIADGQVTRSVDTV 242 (407)
Q Consensus 175 ~~-~~p~c~G~egVl~aYr~~l~~---------v~LsGPT~FAPVI~~ai~ive~s~~~Y--~VLLIITDG~Itds~d~~ 242 (407)
++ +.| +++.|.+. +..+.. +..+....++-+|-.++++......+| -=+++|||-+ ..
T Consensus 82 ~~L~~p---~a~~i~~L-~~l~~~~~~~~~~~~~~~~~~~~l~daL~~~~~~f~~~~~k~~~kRI~lfTd~D------~P 151 (584)
T TIGR00578 82 QELDNP---GAKRILEL-DQFKGDQGPKKFRDTYGHGSDYSLSEVLWVCANLFSDVQFRMSHKRIMLFTNED------NP 151 (584)
T ss_pred eeCCCC---CHHHHHHH-HHHhhccCccchhhccCCCCCCcHHHHHHHHHHHHHhcchhhcCcEEEEECCCC------CC
Confidence 32 223 33332211 111111 111222478999998888876533333 1258888853 22
Q ss_pred cCCCChhHHHHHHHHHHhcCCCcEEEEEeccC-CCccccccc
Q 015418 243 RGCLSPQEQKTVDAIVKASELPLSIVLVGVGD-GPWDMMKEF 283 (407)
Q Consensus 243 ~~~l~~d~~eTidaIv~AS~lPLSII~VGVGd-~~F~~M~~L 283 (407)
|+.=+.....+..-+.+..++-+.|.++-+.. ++|+.-..+
T Consensus 152 ~~~~~~~~~~a~~~a~dl~~~gi~ielf~l~~~~~Fd~s~Fy 193 (584)
T TIGR00578 152 HGNDSAKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFY 193 (584)
T ss_pred CCCchhHHHHHHHHHHHHHhcCeEEEEEecCCCCCCChhhhh
Confidence 22211222333445677778999999887753 234444333
No 58
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.11 E-value=58 Score=33.97 Aligned_cols=110 Identities=20% Similarity=0.194 Sum_probs=62.0
Q ss_pred eceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeecCCCCCCCCccccCCCCCc
Q 015418 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRF 180 (407)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD~Dk~iPvfGFGa~~t~~~~vFsf~~~~p~ 180 (407)
.+..||||-|+|.-. -..-++|..|-.|+. .+...+|-.-+ |..
T Consensus 262 ~~i~vaVDtSGS~~d------------------~ei~a~~~Ei~~Il~----~~~~eltli~~--------------D~~ 305 (396)
T COG3864 262 IKIVVAVDTSGSMTD------------------AEIDAAMTEIFDILK----NKNYELTLIEC--------------DNI 305 (396)
T ss_pred hheEEEEecCCCccH------------------HHHHHHHHHHHHHHh----CCCcEEEEEEe--------------cch
Confidence 457899999999842 366777888877772 23333333322 111
Q ss_pred cCCHHHHHHHHH---hhCCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHH
Q 015418 181 CYGFEEVLSRYR---EIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAI 257 (407)
Q Consensus 181 c~G~egVl~aYr---~~l~~v~LsGPT~FAPVI~~ai~ive~s~~~Y~VLLIITDG~Itds~d~~~~~l~~d~~eTidaI 257 (407)
+.+.- .|| ..-+.+.=.|.|.|.||++..- +.. .=-+|+.+|||.-+-- |
T Consensus 306 v~~~~----~~r~g~~~~~~~~ggG~Tdf~Pvfeyle----k~~-~~~~lIyfTDG~gd~p------------------~ 358 (396)
T COG3864 306 VRRMY----RVRKGRDMKKKLDGGGGTDFSPVFEYLE----KNR-MECFLIYFTDGMGDQP------------------L 358 (396)
T ss_pred hhhhh----ccCCcccCCcccCCCCCccccHHHHHHH----hhc-ccceEEEEccCCCCcc------------------c
Confidence 11110 111 1223333357799999998653 322 1267889999965320 1
Q ss_pred HHhcCCCcEEEEEeccC
Q 015418 258 VKASELPLSIVLVGVGD 274 (407)
Q Consensus 258 v~AS~lPLSII~VGVGd 274 (407)
.+-.-|+=|++-|-|.
T Consensus 359 -~~r~~~~lwVl~~~~~ 374 (396)
T COG3864 359 -VFRPKVLLWVLTGAKG 374 (396)
T ss_pred -ccCCcceEEEecCCcc
Confidence 1334568888887653
No 59
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=50.66 E-value=94 Score=32.61 Aligned_cols=64 Identities=19% Similarity=0.292 Sum_probs=42.1
Q ss_pred ccccHHHHHHHHHHcCcce-eceEEEEEcCCCCCCCCCCCCCCCCcccc--CCCCCHHHHHHHHHhhcccccC
Q 015418 82 DYKSLDQVTEALARAGLES-SNLIVGIDFTKSNEWTGKRSFNRRSLHYI--GDGLNPYEQAISIIGKTLAVFD 151 (407)
Q Consensus 82 ~ys~ld~V~~aL~~~Gle~-~nliVaIDFT~SN~~~g~~s~~~~SLHyi--~~~~N~YqqAI~~Ig~vL~~yD 151 (407)
+-.-|+.|.+|++++|++- -.+.++||+-+|--|. ....+|. .+..-...+||+.+.++++.|+
T Consensus 212 d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~------~~~y~~~~~~~~~~t~~eai~~~~~l~e~~~ 278 (408)
T cd03313 212 NEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYD------EGKYVYDSDEGKKLTSEELIDYYKELVKKYP 278 (408)
T ss_pred hHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcc------cCcceeccCCCcccCHHHHHHHHHHHHHhCC
Confidence 3345777999999999982 2799999998875332 1122221 1122245888888888887776
No 60
>KOG4465 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.24 E-value=2.2e+02 Score=30.43 Aligned_cols=142 Identities=18% Similarity=0.293 Sum_probs=86.6
Q ss_pred eceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeecCCCCCCCCccccCCCCCc
Q 015418 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRF 180 (407)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD~Dk~iPvfGFGa~~t~~~~vFsf~~~~p~ 180 (407)
-++++|+|.++|+.. +-|-. -.|--+.|- .+ .|-..-.....-|..|-+..+.. +|.-+.
T Consensus 428 kr~~laldvs~sm~~--------rv~~s---~ln~reaaa-~m--~linlhnead~~~vaf~d~lte~----pftkd~-- 487 (598)
T KOG4465|consen 428 KRFCLALDVSASMNQ--------RVLGS---ILNAREAAA-AM--CLINLHNEADSRCVAFCDELTEC----PFTKDM-- 487 (598)
T ss_pred ceEEEEEecchhhhh--------hhhcc---ccchHHHHh-hh--heeeeccccceeEEEeccccccC----CCcccc--
Confidence 479999999999842 11111 134333332 22 23333345556788888876542 232222
Q ss_pred cCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHh
Q 015418 181 CYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKA 260 (407)
Q Consensus 181 c~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~s~~~Y~VLLIITDG~Itds~d~~~~~l~~d~~eTidaIv~A 260 (407)
-+..|+.+- .++..+|..+=-|.| .+++++.+.-|.+|+||.+. -.|+.-| .+.++.-++|
T Consensus 488 --kigqv~~~~----nni~~g~tdcglpm~-----wa~ennlk~dvfii~tdndt------~ageihp--~~aik~yrea 548 (598)
T KOG4465|consen 488 --KIGQVLDAM----NNIDAGGTDCGLPMI-----WAQENNLKADVFIIFTDNDT------FAGEIHP--AEAIKEYREA 548 (598)
T ss_pred --cHHHHHHHH----hcCCCCCCccCCcee-----ehhhcCCCccEEEEEecCcc------cccccCH--HHHHHHHHHh
Confidence 355565543 344555555555544 45677788999999999643 2344434 5778889999
Q ss_pred cCCC-cEEEEEeccCCCccccc
Q 015418 261 SELP-LSIVLVGVGDGPWDMMK 281 (407)
Q Consensus 261 S~lP-LSII~VGVGd~~F~~M~ 281 (407)
+..| --+|+.|+-.-+|..-.
T Consensus 549 ~~i~dakliv~amqa~d~siad 570 (598)
T KOG4465|consen 549 MDIHDAKLIVCAMQANDFSIAD 570 (598)
T ss_pred cCCCcceEEEEEeecCCceecC
Confidence 9999 67788888887887544
No 61
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=47.00 E-value=38 Score=34.35 Aligned_cols=150 Identities=17% Similarity=0.265 Sum_probs=75.5
Q ss_pred cccccccHHHHHHHHHHcCcceeceEEEEEcCCCCCCCCCCCCCCCCccccCCCCC---------HHHHHHHHHhhcccc
Q 015418 79 IADDYKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLN---------PYEQAISIIGKTLAV 149 (407)
Q Consensus 79 i~~~ys~ld~V~~aL~~~Gle~~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N---------~YqqAI~~Ig~vL~~ 149 (407)
+.++..-||.|.+|++++|++- ++.+|||+.+|--+ +.+.--|.-...+ .=++-|.-..+++..
T Consensus 76 ~~~~eeaL~ll~~Ai~~aGy~~-~v~ialD~AAsefy------d~~~gkY~~~~~~~~~~~~~~~s~delid~y~~li~~ 148 (295)
T PF00113_consen 76 IDDNEEALDLLMEAIKEAGYEP-DVAIALDVAASEFY------DEEDGKYDLEFKSKEKDPSRYKSSDELIDYYKDLIKK 148 (295)
T ss_dssp BSSHHHHHHHHHHHHHHTT-TT-TBEEEEE--GGGGE------ETETTEEETTTTSSSSTGGGEEEHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHccccc-eeeeeccccHHHhh------hccCCeEEEeecccccccccccCHHHHHHHHHHHHHh
Confidence 3444567899999999999995 99999999998753 1111112111111 123334444444443
Q ss_pred cCCCCccceEeecCCCCCCCCccccCCCCCccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCccEEEEE
Q 015418 150 FDEDNLIPCYGFGDASTHDQDVFSFYSGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLI 229 (407)
Q Consensus 150 yD~Dk~iPvfGFGa~~t~~~~vFsf~~~~p~c~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~s~~~Y~VLLI 229 (407)
| |+...-+ +|.++ ..++..+.=++.-.++++-|--.|.--.+.+.+-+++... =. |+
T Consensus 149 Y------PIvsIED---------pf~ed-----D~e~w~~lt~~~g~~~~iVGDDl~vTn~~ri~~~i~~~~~-na--~l 205 (295)
T PF00113_consen 149 Y------PIVSIED---------PFDED-----DWEGWAKLTKRLGDKIQIVGDDLFVTNPKRIKKGIEKKAC-NA--LL 205 (295)
T ss_dssp S-------EEEEES---------SS-TT------HHHHHHHHHHHTTTSEEEESTTTTT-HHHHHHHHHCT---SE--EE
T ss_pred c------CeEEEEc---------ccccc-----chHHHHHHHHhhhcceeeecccccccchhhhhccchhhhc-cc--hh
Confidence 3 4444422 12222 2333332222233478888876664444444443333211 12 33
Q ss_pred EeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEE
Q 015418 230 IADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLV 270 (407)
Q Consensus 230 ITDG~Itds~d~~~~~l~~d~~eTidaIv~AS~lPLSII~V 270 (407)
|-=.||.- .-+|++++..|...-..+|+=
T Consensus 206 lK~NQigT------------vte~lea~~~a~~~g~~~vvS 234 (295)
T PF00113_consen 206 LKPNQIGT------------VTETLEAVKLAKSAGWGVVVS 234 (295)
T ss_dssp E-HHHHSS------------HHHHHHHHHHHHHTT-EEEEE
T ss_pred hhhhhhHH------------HHHHHHHHHHHHHCCceeecc
Confidence 44445543 568999999998888777763
No 62
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=45.77 E-value=53 Score=36.42 Aligned_cols=163 Identities=13% Similarity=0.206 Sum_probs=94.7
Q ss_pred eceEEEEEcCCCCCCCCCCCCCCCCccccCC---CCCHHHHHHHHHhhcccccCCCCccceEeecCCCCC---CCCcccc
Q 015418 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGD---GLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTH---DQDVFSF 174 (407)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~---~~N~YqqAI~~Ig~vL~~yD~Dk~iPvfGFGa~~t~---~~~vFsf 174 (407)
+-|.+-||+|+|+.. ++++ ..--..+|+..++.-++..-+- ..+++|-.+..+ -+.|-.|
T Consensus 447 la~TLLvD~S~St~a------------~mdetrRvidl~~eaL~~la~~~qa~gd~--~~~~~fts~rr~~vri~tvk~F 512 (637)
T COG4548 447 LAFTLLVDVSASTDA------------KMDETRRVIDLFHEALLVLAHGHQALGDS--EDILDFTSRRRPWVRINTVKDF 512 (637)
T ss_pred ceeEEEeecccchHH------------HhhhhhhhHHHHHHHHHHhhchhhhhCCH--HHhcCchhhcCcceeeeeeecc
Confidence 448889999999853 2222 1234556666665544443322 334555443222 1223233
Q ss_pred CCCCCccCCHHHHHHHHHhh----CCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhH
Q 015418 175 YSGGRFCYGFEEVLSRYREI----VPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQE 250 (407)
Q Consensus 175 ~~~~p~c~G~egVl~aYr~~----l~~v~LsGPT~FAPVI~~ai~ive~s~~~Y~VLLIITDG~Itds~d~~~~~l~~d~ 250 (407)
+. .|.+. +..+...--|--...|++|.+..-+.++.=-.||++|||...| +|--.|+. -.
T Consensus 513 De-------------s~~~~~~~RImALePg~ytR~G~AIR~As~kL~~rpq~qklLivlSDGkPnd-~d~YEgr~--gI 576 (637)
T COG4548 513 DE-------------SMGETVGPRIMALEPGYYTRDGAAIRHASAKLMERPQRQKLLIVLSDGKPND-FDHYEGRF--GI 576 (637)
T ss_pred cc-------------ccccccchhheecCccccccccHHHHHHHHHHhcCcccceEEEEecCCCccc-cccccccc--ch
Confidence 21 11111 1223344456777889988776544444556788999999987 45222333 35
Q ss_pred HHHHHHHHHhcCCCcEEEEEeccCCCcccccccCCCCCCccccceeccc
Q 015418 251 QKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFDDNIPARAFDNFQFVN 299 (407)
Q Consensus 251 ~eTidaIv~AS~lPLSII~VGVGd~~F~~M~~LDd~l~~R~rDNvQFV~ 299 (407)
..|.+|+.+|-+.-|+++-|=|-...-+.+..+-+ .|..-||.
T Consensus 577 eDTr~AV~eaRk~Gi~VF~Vtld~ea~~y~p~~fg------qngYa~V~ 619 (637)
T COG4548 577 EDTREAVIEARKSGIEVFNVTLDREAISYLPALFG------QNGYAFVE 619 (637)
T ss_pred hhHHHHHHHHHhcCceEEEEEecchhhhhhHHHhc------cCceEEcc
Confidence 78999999999999999999887765444443321 25666664
No 63
>PF07466 DUF1517: Protein of unknown function (DUF1517); InterPro: IPR010903 This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=44.81 E-value=33 Score=34.67 Aligned_cols=15 Identities=33% Similarity=0.725 Sum_probs=8.9
Q ss_pred CCccEEE--EEEeCCcc
Q 015418 221 GGQYHVL--LIIADGQV 235 (407)
Q Consensus 221 ~~~Y~VL--LIITDG~I 235 (407)
.+.|-|+ |+=++|..
T Consensus 216 ~~eyivvtilva~~g~~ 232 (289)
T PF07466_consen 216 PNEYIVVTILVAAEGKL 232 (289)
T ss_pred CCceEEEEEEEEecCCc
Confidence 3567664 44567765
No 64
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=44.30 E-value=43 Score=32.84 Aligned_cols=57 Identities=21% Similarity=0.323 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCC---cEEEEEeccC
Q 015418 207 APVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELP---LSIVLVGVGD 274 (407)
Q Consensus 207 APVI~~ai~ive~s~~~Y~VLLIITDG~Itds~d~~~~~l~~d~~eTidaIv~AS~lP---LSII~VGVGd 274 (407)
-|++..+++.++++++..|++=+++||+|+-. ++.....|.-|.+.- +.|-.+.=|.
T Consensus 13 n~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh-----------~~Hl~al~~~a~~~gv~~V~vH~f~DGR 72 (223)
T PF06415_consen 13 NPVLLEAIEHAKKNGGRLHLMGLLSDGGVHSH-----------IDHLFALIKLAKKQGVKKVYVHAFTDGR 72 (223)
T ss_dssp SHHHHHHHHHHCCTT--EEEEEEESS-SSS-------------HHHHHHHHHHHHHTT-SEEEEEEEE-SS
T ss_pred CHHHHHHHHHHHhcCCeEEEEEEecCCCcccc-----------HHHHHHHHHHHHHcCCCEEEEEEecCCC
Confidence 37888999999988888999889999999852 444444444455433 5566655553
No 65
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=43.65 E-value=48 Score=36.96 Aligned_cols=64 Identities=17% Similarity=0.306 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhcCCccEEEEEEeCCcccccccc----ccCCCChhHHHHHHHHHHhcCC-CcEEEEEeccCC
Q 015418 208 PVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDT----VRGCLSPQEQKTVDAIVKASEL-PLSIVLVGVGDG 275 (407)
Q Consensus 208 PVI~~ai~ive~s~~~Y~VLLIITDG~Itds~d~----~~~~l~~d~~eTidaIv~AS~l-PLSII~VGVGd~ 275 (407)
..|.-|.+...+...+=-|||+|+||...|. .| ...-|..+++++| ...... +|=++=||||..
T Consensus 500 eAl~wa~~rL~~R~e~rKiL~ViSDG~P~D~-~TlsvN~~~~l~~hLr~vi---~~~e~~~~vel~aigIg~D 568 (600)
T TIGR01651 500 EALMWAHQRLIARPEQRRILMMISDGAPVDD-STLSVNPGNYLERHLRAVI---EEIETRSPVELLAIGIGHD 568 (600)
T ss_pred HHHHHHHHHHhcCcccceEEEEEeCCCcCCc-cccccCchhHHHHHHHHHH---HHHhccCCceEEEeecccc
Confidence 3444444444444455689999999997751 11 0113333344444 444443 888888999874
No 66
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=40.34 E-value=91 Score=31.03 Aligned_cols=86 Identities=21% Similarity=0.406 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHhhCCceeec-CCCCh-----HHHHHHHHHHHHhcC--CccEEEEEEeCCc--cccccccccCCCChhHH
Q 015418 182 YGFEEVLSRYREIVPNLKLA-GPTSF-----APVIEMAMSIVEQSG--GQYHVLLIIADGQ--VTRSVDTVRGCLSPQEQ 251 (407)
Q Consensus 182 ~G~egVl~aYr~~l~~v~Ls-GPT~F-----APVI~~ai~ive~s~--~~Y~VLLIITDG~--Itds~d~~~~~l~~d~~ 251 (407)
.|+.+++..-++..|.+.+. =|+.+ +.=|-.+++.+.+.+ ..|=| |||+-|+ +.|. ..+ +.+
T Consensus 26 Aa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dv-iii~RGGGs~eDL-----~~F--N~e 97 (319)
T PF02601_consen 26 AAIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDV-IIIIRGGGSIEDL-----WAF--NDE 97 (319)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccE-EEEecCCCChHHh-----ccc--ChH
Confidence 35566655555555544321 23333 344555555554432 23444 4444443 3331 011 345
Q ss_pred HHHHHHHHhcCCCcEEEEEeccCC-Cccc
Q 015418 252 KTVDAIVKASELPLSIVLVGVGDG-PWDM 279 (407)
Q Consensus 252 eTidaIv~AS~lPLSII~VGVGd~-~F~~ 279 (407)
+..+||.+ |..| ||.|||-+ ||..
T Consensus 98 ~varai~~-~~~P---visaIGHe~D~ti 122 (319)
T PF02601_consen 98 EVARAIAA-SPIP---VISAIGHETDFTI 122 (319)
T ss_pred HHHHHHHh-CCCC---EEEecCCCCCchH
Confidence 66666653 3566 67777753 4433
No 67
>PLN00191 enolase
Probab=39.87 E-value=2.7e+02 Score=30.05 Aligned_cols=70 Identities=17% Similarity=0.367 Sum_probs=42.6
Q ss_pred cccccHHHHHHHHHHcCcceeceEEEEEcCCCCCCCCCCCCCC--CCccccCCCCCHHHHHHHHHhhcccccC
Q 015418 81 DDYKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNR--RSLHYIGDGLNPYEQAISIIGKTLAVFD 151 (407)
Q Consensus 81 ~~ys~ld~V~~aL~~~Gle~~nliVaIDFT~SN~~~g~~s~~~--~SLHyi~~~~N~YqqAI~~Ig~vL~~yD 151 (407)
++-.-|+.|.+|+.++|++ -++.+|||+-+|--+..+..|.- +.-..-+...-..+++|+.+-.++..|+
T Consensus 241 ~~~eal~ll~eAi~~ag~~-~~i~i~lD~Aase~~~~~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~ 312 (457)
T PLN00191 241 DNKEGLELLKEAIEKAGYT-GKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYP 312 (457)
T ss_pred CHHHHHHHHHHHHHHcCCC-CceEEEeehhhhhhcccCCceEeeccccCCCcccccCHHHHHHHHHHHhhcCC
Confidence 4445688999999999999 47999999999854310001100 0000000111266888888888776665
No 68
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=38.44 E-value=2.5e+02 Score=26.78 Aligned_cols=161 Identities=12% Similarity=0.148 Sum_probs=82.9
Q ss_pred ceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC--CCCccceEeecCCCC------C---CCC
Q 015418 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD--EDNLIPCYGFGDAST------H---DQD 170 (407)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD--~Dk~iPvfGFGa~~t------~---~~~ 170 (407)
.+++.||.|..- +. .+..+.+++.|...|+... ++.+|-+..|+...+ + .+.
T Consensus 5 ~~vFvID~s~~a---------------i~--~~~l~~~~~sl~~~l~~lp~~~~~~igiITf~~~V~~~~~~~~~~~~~~ 67 (239)
T cd01468 5 VFVFVIDVSYEA---------------IK--EGLLQALKESLLASLDLLPGDPRARVGLITYDSTVHFYNLSSDLAQPKM 67 (239)
T ss_pred EEEEEEEcchHh---------------cc--ccHHHHHHHHHHHHHHhCCCCCCcEEEEEEeCCeEEEEECCCCCCCCeE
Confidence 468889988642 11 2356667777777776655 778888888876532 0 001
Q ss_pred -ccccCCCCC---ccC----CHHHH---HHHHHhhCCcee-----ecCCCChHHHHHHHHHHHHhc--CCccEEEEEEeC
Q 015418 171 -VFSFYSGGR---FCY----GFEEV---LSRYREIVPNLK-----LAGPTSFAPVIEMAMSIVEQS--GGQYHVLLIIAD 232 (407)
Q Consensus 171 -vFsf~~~~p---~c~----G~egV---l~aYr~~l~~v~-----LsGPT~FAPVI~~ai~ive~s--~~~Y~VLLIITD 232 (407)
|++ +.+++ ... -+.+. ++..-+.++... -....++.+.|+.|..+.+.. +|+ | ++++.
T Consensus 68 ~v~~-dl~d~f~p~~~~~l~~~~e~~~~i~~~l~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~gGk--I-~~f~s 143 (239)
T cd01468 68 YVVS-DLKDVFLPLPDRFLVPLSECKKVIHDLLEQLPPMFWPVPTHRPERCLGPALQAAFLLLKGTFAGGR--I-IVFQG 143 (239)
T ss_pred EEeC-CCccCcCCCcCceeeeHHHHHHHHHHHHHhhhhhccccCCCCCcccHHHHHHHHHHHHhhcCCCce--E-EEEEC
Confidence 111 11121 111 22222 222222222221 223589999999999999887 553 3 44444
Q ss_pred Cccc-------ccccccc-------CCCChhHHHHHHHHHHhcCCCcEEEEEeccCC--Cccccccc
Q 015418 233 GQVT-------RSVDTVR-------GCLSPQEQKTVDAIVKASELPLSIVLVGVGDG--PWDMMKEF 283 (407)
Q Consensus 233 G~It-------ds~d~~~-------~~l~~d~~eTidaIv~AS~lPLSII~VGVGd~--~F~~M~~L 283 (407)
|-.+ ...+.++ .-+.+..+--.+.-.++++.-+++=+...+.. +...|..|
T Consensus 144 g~pt~GpG~l~~~~~~~~~~~~~e~~~~~~a~~fY~~la~~~~~~~isvdlF~~~~~~~dl~~l~~l 210 (239)
T cd01468 144 GLPTVGPGKLKSREDKEPIRSHDEAQLLKPATKFYKSLAKECVKSGICVDLFAFSLDYVDVATLKQL 210 (239)
T ss_pred CCCCCCCCccccCcccccCCCccchhcccccHHHHHHHHHHHHHcCeEEEEEeccccccCHHHhhhh
Confidence 4332 2111101 12333333334555667777777777766654 34445544
No 69
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=38.11 E-value=1.3e+02 Score=31.93 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=42.2
Q ss_pred CCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEeccC
Q 015418 195 VPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGD 274 (407)
Q Consensus 195 l~~v~LsGPT~FAPVI~~ai~ive~s~~~Y~VLLIITDG~Itds~d~~~~~l~~d~~eTidaIv~AS~lPLSII~VGVGd 274 (407)
+-.|++.- -++.-+++++.+..++.|-. .+.+|++||..+ +.++..+. +...+ +..-|||.
T Consensus 264 ~~GVR~DS-Gd~~~~~~kvr~~ld~~G~~-~~~Ii~Sdg~ld--------------e~~i~~l~-~~g~~--~d~FGvGT 324 (405)
T COG1488 264 LDGVRLDS-GDPRELSEKVRAHLDKLGYD-PVKIIVSDGLLD--------------EKIIALLR-AFGAR--NDAFGVGT 324 (405)
T ss_pred ceEEECCC-CCHHHHHHHHHHHHHHcCCC-ceEEEEeCCcch--------------HHHHHHHH-HhCCC--ccEeccch
Confidence 44556654 57777888888887776543 388999999764 34454444 45666 88888887
Q ss_pred C
Q 015418 275 G 275 (407)
Q Consensus 275 ~ 275 (407)
.
T Consensus 325 ~ 325 (405)
T COG1488 325 N 325 (405)
T ss_pred h
Confidence 3
No 70
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....
Probab=37.09 E-value=3.7e+02 Score=25.52 Aligned_cols=163 Identities=17% Similarity=0.241 Sum_probs=84.0
Q ss_pred ceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC--CCCccceEeecCCCC-----C----C--
Q 015418 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD--EDNLIPCYGFGDAST-----H----D-- 168 (407)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD--~Dk~iPvfGFGa~~t-----~----~-- 168 (407)
.+++.||.|...- ..+..+.+++.|-.+|.... ++-+|-+..|+.... . .
T Consensus 5 ~y~FvID~s~~av-----------------~~g~~~~~~~sl~~~l~~l~~~~~~~vgiitfd~~V~~y~l~~~~~~~~~ 67 (243)
T PF04811_consen 5 VYVFVIDVSYEAV-----------------QSGLLQSLIESLKSALDSLPGDERTRVGIITFDSSVHFYNLSSSLSQPQM 67 (243)
T ss_dssp EEEEEEE-SHHHH-----------------HHTHHHHHHHHHHHHGCTSSTSTT-EEEEEEESSSEEEEETTTTSSSTEE
T ss_pred EEEEEEECchhhh-----------------hccHHHHHHHHHHHHHHhccCCCCcEEEEEEeCCEEEEEECCCCcCCCcc
Confidence 4788899885421 12467788888888887777 888888888886542 0 0
Q ss_pred ------CCccccCCCC-----Ccc-CCHHHHHHHHHhhCCce-eecCCCChHHHHHHHHHHHH--hcCCccEEEEEEeC-
Q 015418 169 ------QDVFSFYSGG-----RFC-YGFEEVLSRYREIVPNL-KLAGPTSFAPVIEMAMSIVE--QSGGQYHVLLIIAD- 232 (407)
Q Consensus 169 ------~~vFsf~~~~-----p~c-~G~egVl~aYr~~l~~v-~LsGPT~FAPVI~~ai~ive--~s~~~Y~VLLIITD- 232 (407)
.+.|.-.+++ .+| .-++++|+.-.+..+.. .-....++...|+.|..+.+ ..+| .|+++++-
T Consensus 68 ~v~~dl~~~~~p~~~~llv~~~e~~~~i~~ll~~L~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~~gG--kI~~F~s~~ 145 (243)
T PF04811_consen 68 IVVSDLDDPFIPLPDGLLVPLSECRDAIEELLESLPSIFPETAGKRPERCLGSALSAALSLLSSRNTGG--KILVFTSGP 145 (243)
T ss_dssp EEEHHTTSHHSSTSSSSSEETTTCHHHHHHHHHHHHHHSTT-TTB-----HHHHHHHHHHHHHHHTS-E--EEEEEESS-
T ss_pred cchHHHhhcccCCcccEEEEhHHhHHHHHHHHHHhhhhcccccccCccccHHHHHHHHHHHHhccccCC--EEEEEeccC
Confidence 1111111111 112 23566666655544433 13356899999999999988 5455 45444432
Q ss_pred ------CccccccccccCC--------CChhHHHHHHHHHHhcCCCcEEEEEeccCC--Cccccccc
Q 015418 233 ------GQVTRSVDTVRGC--------LSPQEQKTVDAIVKASELPLSIVLVGVGDG--PWDMMKEF 283 (407)
Q Consensus 233 ------G~Itds~d~~~~~--------l~~d~~eTidaIv~AS~lPLSII~VGVGd~--~F~~M~~L 283 (407)
|.+...-++.+.. +.++.+--.+.-.+++..-+++=+.-.+.. ++..|..|
T Consensus 146 pt~G~Gg~l~~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~~~~~l~tl~~l 212 (243)
T PF04811_consen 146 PTYGPGGSLKKREDSSHYDTEKEKALLLPPANEFYKKLAEECSKQGISVDLFVFSSDYVDLATLGPL 212 (243)
T ss_dssp --SSSTTSS-SBTTSCCCCHCTTHHCHSHSSSHHHHHHHHHHHHCTEEEEEEEECSS--SHHHHTHH
T ss_pred CCCCCCceecccccccccccccchhhhccccchHHHHHHHHHHhcCCEEEEEeecCCCCCcHhHHHH
Confidence 2222211111111 111111234556667888888877777764 33344444
No 71
>PTZ00081 enolase; Provisional
Probab=34.61 E-value=3.5e+02 Score=29.00 Aligned_cols=67 Identities=19% Similarity=0.343 Sum_probs=42.4
Q ss_pred cccccHHHHHHHHHHcCcceeceEEEEEcCCCCCCCCC-CCCCCCCccccC---C--CCCHHHHHHHHHhhcccccC
Q 015418 81 DDYKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGK-RSFNRRSLHYIG---D--GLNPYEQAISIIGKTLAVFD 151 (407)
Q Consensus 81 ~~ys~ld~V~~aL~~~Gle~~nliVaIDFT~SN~~~g~-~s~~~~SLHyi~---~--~~N~YqqAI~~Ig~vL~~yD 151 (407)
+.-.-|+.|.+|.+++|++ -++.+|||+-+|.-+..+ ..| .+.+.. . ..-.-++.|+-+.+.++.|+
T Consensus 226 ~~eeal~ll~eAi~~ag~~-~~v~i~lD~Aase~~~~~~~~Y---~~~f~~~~~~~~~~~s~~eli~~~~~~l~~y~ 298 (439)
T PTZ00081 226 DPEEALDLLVEAIKKAGYE-GKVKICMDVAASEFYDKEKKVY---DLDFKNPNNDKSNKLTGEELVELYLDLVKKYP 298 (439)
T ss_pred CHHHHHHHHHHHHHHcCCc-CceEEEEehhhhhhhhccCCce---eeeeccccCccccccCHHHHHHHHHHHHhcCC
Confidence 3335578899999999999 479999999988643100 001 111111 0 12456777777778888774
No 72
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=33.32 E-value=44 Score=36.26 Aligned_cols=90 Identities=13% Similarity=0.234 Sum_probs=45.1
Q ss_pred EEE-EEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEeccCCCcccccccCCCCCCcccc-ceecccchh
Q 015418 225 HVL-LIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFDDNIPARAFD-NFQFVNFTE 302 (407)
Q Consensus 225 ~VL-LIITDG~Itds~d~~~~~l~~d~~eTidaIv~AS~lPLSII~VGVGd~~F~~M~~LDd~l~~R~rD-NvQFV~f~d 302 (407)
.|. |+.|||.|+|. .+...-.-++++++.+.+. +.|.=|++ .=-+-.-..-++|-..+. ...+ .|..|+..+
T Consensus 146 tIgivVtTDgsi~dI---~Re~y~~aEe~~i~eLk~~-~kPfiivl-N~~dp~~~et~~l~~~l~-eky~vpvl~v~c~~ 219 (492)
T TIGR02836 146 TIGVVVTTDGTITDI---PREDYVEAEERVIEELKEL-NKPFIILL-NSTHPYHPETEALRQELE-EKYDVPVLAMDVES 219 (492)
T ss_pred cEEEEEEcCCCcccc---ccccchHHHHHHHHHHHhc-CCCEEEEE-ECcCCCCchhHHHHHHHH-HHhCCceEEEEHHH
Confidence 454 55569998863 3455556688888888754 66754443 222200011111111111 1122 234555555
Q ss_pred hhcccCCcchhHHHHHHHHHHHhH
Q 015418 303 IMSKNHDQTRKETEFALSALMEIP 326 (407)
Q Consensus 303 i~~k~~~~~~~d~~LA~~~L~EIP 326 (407)
+... +=..+.+++|.|+|
T Consensus 220 l~~~------DI~~il~~vL~EFP 237 (492)
T TIGR02836 220 MRES------DILSVLEEVLYEFP 237 (492)
T ss_pred cCHH------HHHHHHHHHHhcCC
Confidence 4321 12457788998864
No 73
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=32.30 E-value=1.1e+02 Score=32.01 Aligned_cols=65 Identities=18% Similarity=0.324 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhcCCccEEEEE--EeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEeccCCCcccccccCC
Q 015418 208 PVIEMAMSIVEQSGGQYHVLLI--IADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFDD 285 (407)
Q Consensus 208 PVI~~ai~ive~s~~~Y~VLLI--ITDG~Itds~d~~~~~l~~d~~eTidaIv~AS~lPLSII~VGVGd~~F~~M~~LDd 285 (407)
-+|+.+++.+++......|.++ ..-|.-. ..++++||..+....+=+||||=|+|.++.|--||+
T Consensus 147 Aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~A-------------~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~ 213 (438)
T PRK00286 147 AAIRDILTVLRRRFPLVEVIIYPTLVQGEGA-------------AASIVAAIERANARGEDVLIVARGGGSLEDLWAFND 213 (438)
T ss_pred HHHHHHHHHHHhcCCCCeEEEecCcCcCccH-------------HHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCc
Confidence 4567777766655322343332 2233222 467788888777766778888888888888888876
No 74
>PRK00077 eno enolase; Provisional
Probab=30.37 E-value=4.7e+02 Score=27.65 Aligned_cols=62 Identities=16% Similarity=0.296 Sum_probs=40.1
Q ss_pred cccHHHHHHHHHHcCcce-eceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccC
Q 015418 83 YKSLDQVTEALARAGLES-SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFD 151 (407)
Q Consensus 83 ys~ld~V~~aL~~~Gle~-~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD 151 (407)
-.-|+.|.+|++++|++- -.+.++||+.+|--|.+. .|. + ....=..+++++.+.++++.|+
T Consensus 216 ~e~l~~lreAi~~ag~~~G~di~l~lD~aas~~~~~~-~y~-----~-~~~~~s~~e~~~~~~~l~e~y~ 278 (425)
T PRK00077 216 EEALDLILEAIEKAGYKPGEDIALALDCAASEFYKDG-KYV-----L-EGEGLTSEEMIDYLAELVDKYP 278 (425)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEehhhhhcccCC-eee-----c-cCCcCCHHHHHHHHHHHHhhCC
Confidence 345778889999999883 369999999887332100 011 1 1111245788888888888776
No 75
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=29.50 E-value=4.5e+02 Score=24.53 Aligned_cols=61 Identities=23% Similarity=0.294 Sum_probs=31.9
Q ss_pred ceeecCCCChHHHHHHHHHHHHhcCCccEEEEE-EeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEeccCC
Q 015418 197 NLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLI-IADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDG 275 (407)
Q Consensus 197 ~v~LsGPT~FAPVI~~ai~ive~s~~~Y~VLLI-ITDG~Itds~d~~~~~l~~d~~eTidaIv~AS~lPLSII~VGVGd~ 275 (407)
.|-|-|.+. .|++++.+..++. |.-|-| -.+|-.++ .++++.++.|.++. =-|+|||+|.-
T Consensus 50 ~vfllG~~~--~v~~~~~~~l~~~---yP~l~i~g~~g~f~~----------~~~~~i~~~I~~s~---~dil~VglG~P 111 (177)
T TIGR00696 50 PIFLYGGKP--DVLQQLKVKLIKE---YPKLKIVGAFGPLEP----------EERKAALAKIARSG---AGIVFVGLGCP 111 (177)
T ss_pred eEEEECCCH--HHHHHHHHHHHHH---CCCCEEEEECCCCCh----------HHHHHHHHHHHHcC---CCEEEEEcCCc
Confidence 444555443 3667776666553 322211 12555542 12455566666532 45888888863
No 76
>COG4573 GatZ Predicted tagatose 6-phosphate kinase [Carbohydrate transport and metabolism]
Probab=27.66 E-value=3.8e+02 Score=28.49 Aligned_cols=108 Identities=22% Similarity=0.288 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEe---ccCCCcccccccC
Q 015418 208 PVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVG---VGDGPWDMMKEFD 284 (407)
Q Consensus 208 PVI~~ai~ive~s~~~Y~VLLIITDG~Itds~d~~~~~l~~d~~eTidaIv~AS~lPLSII~VG---VGd~~F~~M~~LD 284 (407)
=||+.+++.+..+. =.||+=-|..||+. +..--|--..|....+.+|.+.-.+|..-+|.| +|-.+|..+.
T Consensus 28 lViEAAl~~a~~~~--~~vLIEAT~NQVnq-~GGYTGMTP~DFr~fV~aiA~~~gfp~e~liLGGDHLGPN~Wq~~p--- 101 (426)
T COG4573 28 LVIEAALRFARASQ--TPVLIEATSNQVNQ-FGGYTGMTPADFRGFVFAIADKLGFPRERLILGGDHLGPNPWQHLP--- 101 (426)
T ss_pred HHHHHHHHHHhccC--CceEeecccccccc-cCCcCCCChHHHHHHHHHHHHHhCCcHHHHhccCCcCCCCccccCC---
Confidence 48999999887764 35666567767653 122223345588999999999999999999887 3333443211
Q ss_pred CCCCCccccceecccchhhhcccCCcchhHHHHHHHHHHHhHHHHHHHHHhc----cCCCCCCCCCCCCCCCCC
Q 015418 285 DNIPARAFDNFQFVNFTEIMSKNHDQTRKETEFALSALMEIPSQYKATIELN----ILGRRKGNVPERVALPPP 354 (407)
Q Consensus 285 d~l~~R~rDNvQFV~f~di~~k~~~~~~~d~~LA~~~L~EIP~Ql~ay~~lg----iL~~~~~~~~~~~~~~~~ 354 (407)
|.++|.+--.-+++|.+.| .|+...+-+-+++||++=
T Consensus 102 ---------------------------------A~eAM~ka~~mv~AYv~AGF~KIHLDaSM~CA~dp~pL~d~ 142 (426)
T COG4573 102 ---------------------------------AAEAMAKADDLVKAYVAAGFTKIHLDASMSCAGDPIPLDDE 142 (426)
T ss_pred ---------------------------------HHHHHHHHHHHHHHHHHcCceeeecccccccCCCCCCCCcH
Confidence 2344444445566676665 467777777787777543
No 77
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=27.22 E-value=2.7e+02 Score=27.73 Aligned_cols=54 Identities=17% Similarity=0.311 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhcCCccEEEEE--EeCCccccccccccCCCChhHHHHHHHHHHhcCCC----cEEEEEecc
Q 015418 207 APVIEMAMSIVEQSGGQYHVLLI--IADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELP----LSIVLVGVG 273 (407)
Q Consensus 207 APVI~~ai~ive~s~~~Y~VLLI--ITDG~Itds~d~~~~~l~~d~~eTidaIv~AS~lP----LSII~VGVG 273 (407)
+-.++.+++..+.......|.++ ..-|.-. ..+.++||..+...+ .=+|||+=|
T Consensus 25 gAa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A-------------~~~I~~al~~~~~~~~~~~~Dviii~RG 84 (319)
T PF02601_consen 25 GAAIQDFLRTLKRRNPIVEIILYPASVQGEGA-------------AASIVSALRKANEMGQADDFDVIIIIRG 84 (319)
T ss_pred hHHHHHHHHHHHHhCCCcEEEEEeccccccch-------------HHHHHHHHHHHHhccccccccEEEEecC
Confidence 45677777777765433444443 2333322 578999999998765 778888765
No 78
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=27.17 E-value=2.5e+02 Score=28.06 Aligned_cols=167 Identities=22% Similarity=0.434 Sum_probs=96.7
Q ss_pred ccccHHHHHHHHHHcCcce-----eceEEEEEcCC--------CCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhccc
Q 015418 82 DYKSLDQVTEALARAGLES-----SNLIVGIDFTK--------SNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLA 148 (407)
Q Consensus 82 ~ys~ld~V~~aL~~~Gle~-----~nliVaIDFT~--------SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~ 148 (407)
.+.+=.+.-..|+..|.+. +++|=|+.|-+ ||--. +---++-|-| ..|+|++++++|-..+-
T Consensus 58 ~~dTP~~aL~klk~~gy~eviiQ~lhiIpG~EyEklvr~V~~~~~dF~--~lkig~PlLy---~k~DYe~~v~aik~~~p 132 (265)
T COG4822 58 DFDTPIQALNKLKDQGYEEVIIQPLHIIPGIEYEKLVREVNKYSNDFK--RLKIGRPLLY---YKNDYEICVEAIKDQIP 132 (265)
T ss_pred ccCCHHHHHHHHHHccchheeeeeeeecCchHHHHHHHHHHHHhhhhh--eeecCCceee---chhhHHHHHHHHHHhcC
Confidence 4566667777788888763 45555554422 11100 0000112222 25899999999999999
Q ss_pred ccCCCCccceEeecCCCCCCCCccccCCCCCccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCC-ccEEE
Q 015418 149 VFDEDNLIPCYGFGDASTHDQDVFSFYSGGRFCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGG-QYHVL 227 (407)
Q Consensus 149 ~yD~Dk~iPvfGFGa~~t~~~~vFsf~~~~p~c~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~s~~-~Y~VL 227 (407)
+...|...=..|=|....-. .+. .=++-++..|+ +..|.+.. +.=-|-+..+++..++++- .-++.
T Consensus 133 pl~k~e~~vlmgHGt~h~s~-~~Y---------acLd~~~~~~~--f~~v~v~~-ve~yP~~d~vi~~l~~~~~~~v~L~ 199 (265)
T COG4822 133 PLNKDEILVLMGHGTDHHSN-AAY---------ACLDHVLDEYG--FDNVFVAA-VEGYPLVDTVIEYLRKNGIKEVHLI 199 (265)
T ss_pred CcCcCeEEEEEecCCCccHH-HHH---------HHHHHHHHhcC--CCceEEEE-ecCCCcHHHHHHHHHHcCCceEEEe
Confidence 99888888777877754321 111 11344444432 12222221 2223667888888877642 23332
Q ss_pred -EEEeCCc--cccccccccCCCChhHHHHHHHHHHhcCCCcEEEEEeccC
Q 015418 228 -LIIADGQ--VTRSVDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGD 274 (407)
Q Consensus 228 -LIITDG~--Itds~d~~~~~l~~d~~eTidaIv~AS~lPLSII~VGVGd 274 (407)
|.++-|. +.|+- .|.+.+-+.|.++..++.-..+=|+|.
T Consensus 200 PlMlvAG~Ha~nDMa--------sddedswk~il~~~G~~v~~~l~GLGE 241 (265)
T COG4822 200 PLMLVAGDHAKNDMA--------SDDEDSWKNILEKNGFKVEVYLHGLGE 241 (265)
T ss_pred eeEEeechhhhhhhc--------ccchHHHHHHHHhCCceeEEEeecCCC
Confidence 5566664 44421 123377778888889999999999996
No 79
>PF11443 DUF2828: Domain of unknown function (DUF2828); InterPro: IPR024553 This uncharacterised domain is found in eukaryotic, bacterial and viral proteins.
Probab=26.86 E-value=3e+02 Score=30.43 Aligned_cols=113 Identities=16% Similarity=0.215 Sum_probs=63.7
Q ss_pred HHHHHcCcceeceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeecCCCCCCCC
Q 015418 91 EALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQD 170 (407)
Q Consensus 91 ~aL~~~Gle~~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD~Dk~iPvfGFGa~~t~~~~ 170 (407)
+.|+..|-- -|+|+.+|.|+||..+ +.+-||. +|=++..-... +-.+.
T Consensus 332 ~~~~~~g~l-~n~iav~DvSGSM~~~------------------pm~vaia-Lgll~ae~~~~------------pf~~~ 379 (534)
T PF11443_consen 332 DYLKDSGSL-ENCIAVCDVSGSMSGP------------------PMDVAIA-LGLLIAELNKG------------PFKGR 379 (534)
T ss_pred HHHhccCCc-cceEEEEecCCccCcc------------------HHHHHHH-HHHHHHHhccc------------ccCCe
Confidence 445565654 4999999999999531 4444443 33333322211 11122
Q ss_pred ccccCCCCCccCCHH--HHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCC----ccEEEEEEeCCcccc
Q 015418 171 VFSFYSGGRFCYGFE--EVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGG----QYHVLLIIADGQVTR 237 (407)
Q Consensus 171 vFsf~~~~p~c~G~e--gVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~s~~----~Y~VLLIITDG~Itd 237 (407)
+.+|. ++|.+.-+. .+.+..+. +.....++-|+|.-|.+.+.+.+.+++. -.--|+||+|=+.+.
T Consensus 380 ~ITFs-~~P~~~~i~g~~l~ekv~~-~~~~~wg~nTn~~aVFdlIL~~Av~~~l~~e~M~k~lfV~SDMeFD~ 450 (534)
T PF11443_consen 380 FITFS-ENPQLHKIKGDTLREKVRF-IRRMDWGMNTNFQAVFDLILETAVKNKLKQEDMPKRLFVFSDMEFDQ 450 (534)
T ss_pred EEeec-CCceEEEecCCCHHHHHHH-HHhCCcccCCcHHHHHHHHHHHHHHcCCChHHCCceEEEEecccccc
Confidence 33442 233332221 23333332 2345677899999999999998876542 134579999877653
No 80
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=26.50 E-value=1.6e+02 Score=31.11 Aligned_cols=67 Identities=19% Similarity=0.380 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhcCCccEEEEE--EeCCccccccccccCCCChhHHHHHHHHHHhcCCC-cEEEEEeccCCCccccccc
Q 015418 207 APVIEMAMSIVEQSGGQYHVLLI--IADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELP-LSIVLVGVGDGPWDMMKEF 283 (407)
Q Consensus 207 APVI~~ai~ive~s~~~Y~VLLI--ITDG~Itds~d~~~~~l~~d~~eTidaIv~AS~lP-LSII~VGVGd~~F~~M~~L 283 (407)
+-+|+.+++.++...-...|.|+ ..-|.-. ..+.++||..+...+ +=+||||-|+|..+.|--|
T Consensus 140 ~aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~a-------------~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~F 206 (432)
T TIGR00237 140 GAALADILHILKRRDPSLKVVIYPTLVQGEGA-------------VQSIVESIELANTKNECDVLIVGRGGGSLEDLWSF 206 (432)
T ss_pred cHHHHHHHHHHHhhCCCceEEEecccccCccH-------------HHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhc
Confidence 34677777777665322333332 3334322 467888888777655 7889999999999999888
Q ss_pred CCC
Q 015418 284 DDN 286 (407)
Q Consensus 284 Dd~ 286 (407)
|+.
T Consensus 207 n~e 209 (432)
T TIGR00237 207 NDE 209 (432)
T ss_pred CcH
Confidence 874
No 81
>COG3552 CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=23.65 E-value=4e+02 Score=28.49 Aligned_cols=104 Identities=16% Similarity=0.169 Sum_probs=59.6
Q ss_pred ceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCCCccceEeecCCCCCCCCccccCCCCCcc
Q 015418 102 NLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRFC 181 (407)
Q Consensus 102 nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~vL~~yD~Dk~iPvfGFGa~~t~~~~vFsf~~~~p~c 181 (407)
.++|-+|.|+|+.|- -+-|..-+.++ -+.+.- .-+|-||.+.+...+++. .
T Consensus 220 ~lvvL~DVSGSm~~y----------------s~~~L~l~hAl---~q~~~R---~~~F~F~TRLt~vT~~l~-------~ 270 (395)
T COG3552 220 PLVVLCDVSGSMSGY----------------SRIFLHLLHAL---RQQRSR---VHVFLFGTRLTRVTHMLR-------E 270 (395)
T ss_pred CeEEEEecccchhhh----------------HHHHHHHHHHH---Hhcccc---eeEEEeechHHHHHHHhc-------c
Confidence 489999999999541 13444444433 334443 339999998765443322 2
Q ss_pred CCHHHHHHHHHhhCCce-eecCCCChHHHHHHHHHHHHhcC-CccEEEEEEeCCcccc
Q 015418 182 YGFEEVLSRYREIVPNL-KLAGPTSFAPVIEMAMSIVEQSG-GQYHVLLIIADGQVTR 237 (407)
Q Consensus 182 ~G~egVl~aYr~~l~~v-~LsGPT~FAPVI~~ai~ive~s~-~~Y~VLLIITDG~Itd 237 (407)
.+.+..+.+-. ..| ..+|-|-..+.+..-.+--..+. ..=-++||+|||--.|
T Consensus 271 rD~~~Al~~~~---a~v~dw~ggTrig~tl~aF~~~~~~~~L~~gA~VlilsDg~drd 325 (395)
T COG3552 271 RDLEDALRRLS---AQVKDWDGGTRIGNTLAAFLRRWHGNVLSGGAVVLILSDGLDRD 325 (395)
T ss_pred CCHHHHHHHHH---hhcccccCCcchhHHHHHHHccccccccCCceEEEEEecccccC
Confidence 24555444333 333 36688888776665544322211 1226679999996444
No 82
>cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=23.38 E-value=3.6e+02 Score=27.36 Aligned_cols=76 Identities=16% Similarity=0.255 Sum_probs=49.0
Q ss_pred CHHHHHHHHHhh-----CCceeecCCCChHHHHHHHHHHHHhcCCc-cEEEEEEeCCccccccccccCCCChhHHHHHHH
Q 015418 183 GFEEVLSRYREI-----VPNLKLAGPTSFAPVIEMAMSIVEQSGGQ-YHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDA 256 (407)
Q Consensus 183 G~egVl~aYr~~-----l~~v~LsGPT~FAPVI~~ai~ive~s~~~-Y~VLLIITDG~Itds~d~~~~~l~~d~~eTida 256 (407)
|+...++.+++. +-.|++.- -+...+++++.++.++.+.. -++.+|++||-++ .+.++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~gvR~DS-Gd~~~~~~~~~~~l~~~g~~~~~~~ii~sg~l~~--------------~~~i~~ 311 (343)
T cd01567 247 GFLNALKLAKALGAGGGLLGVRLDS-GDPVELIKKVRKHLDELGIDLNKKKIIISGDLDT--------------EEAIEL 311 (343)
T ss_pred HHHHHHHHHHhhcccCCCcEEECCC-CCHHHHHHHHHHHHHHcCCCCCCeEEEEECCCCH--------------HHHHHH
Confidence 455555555554 33455543 36677888888888877652 2555788887653 356666
Q ss_pred HHHhcCCCcEEEEEeccCC
Q 015418 257 IVKASELPLSIVLVGVGDG 275 (407)
Q Consensus 257 Iv~AS~lPLSII~VGVGd~ 275 (407)
+..+-. -.+++.|||..
T Consensus 312 ~~~~~~--~~~~~fGvGt~ 328 (343)
T cd01567 312 LLEQGA--SPNDAFGVGTS 328 (343)
T ss_pred HHHcCC--CcCcEEeeCcc
Confidence 766655 56788899983
No 83
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=21.57 E-value=5.2e+02 Score=24.05 Aligned_cols=38 Identities=13% Similarity=0.241 Sum_probs=26.6
Q ss_pred CceeecC--CCChHHHHHHHHHHHHhcCCccEEEEEEeCCccc
Q 015418 196 PNLKLAG--PTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVT 236 (407)
Q Consensus 196 ~~v~LsG--PT~FAPVI~~ai~ive~s~~~Y~VLLIITDG~It 236 (407)
..|.|.| |+...+.+..+++.+++.+ .. +.|.|.|-..
T Consensus 67 ~~I~~~GGEPll~~~~~~~li~~~~~~g--~~-~~i~TNG~~~ 106 (235)
T TIGR02493 67 GGVTFSGGEPLLQPEFLSELFKACKELG--IH-TCLDTSGFLG 106 (235)
T ss_pred CeEEEeCcccccCHHHHHHHHHHHHHCC--CC-EEEEcCCCCC
Confidence 3578775 8888888888888887754 22 4677999543
No 84
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=21.33 E-value=3.7e+02 Score=29.47 Aligned_cols=139 Identities=19% Similarity=0.284 Sum_probs=80.5
Q ss_pred eceEEEEEcCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhh-cccccCCCCccceEeecCCCCCCCCccccCCCCC
Q 015418 101 SNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGK-TLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGR 179 (407)
Q Consensus 101 ~nliVaIDFT~SN~~~g~~s~~~~SLHyi~~~~N~YqqAI~~Ig~-vL~~yD~Dk~iPvfGFGa~~t~~~~vFsf~~~~p 179 (407)
.-+.|-+|+|-|+-.-|+ + -|-.|+.-++.. |...|--| .+.+..||.... +|
T Consensus 464 aAvallvDtS~SM~~eGR---------w-----~PmKQtALALhHLv~TrfrGD-~l~~i~Fgr~A~---~v-------- 517 (652)
T COG4867 464 AAVALLVDTSFSMVMEGR---------W-----LPMKQTALALHHLVCTRFRGD-ALQIIAFGRYAR---TV-------- 517 (652)
T ss_pred cceeeeeeccHHHHHhcc---------C-----CchHHHHHHHHHHHHhcCCCc-ceEEEeccchhc---cc--------
Confidence 347788999999864442 1 233333333333 45566555 456777776321 11
Q ss_pred ccCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccC-------CCCh-hHH
Q 015418 180 FCYGFEEVLSRYREIVPNLKLAGPTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRG-------CLSP-QEQ 251 (407)
Q Consensus 180 ~c~G~egVl~aYr~~l~~v~LsGPT~FAPVI~~ai~ive~s~~~Y~VLLIITDG~Itds~d~~~~-------~l~~-d~~ 251 (407)
-++++ ..++.|.-.| ||.+.-+..|-++.+..++.-.++||||||..+-......| -++| -+-
T Consensus 518 ---~v~eL-----t~l~~v~eqg-TNlhhaL~LA~r~l~Rh~~~~~~il~vTDGePtAhle~~DG~~~~f~yp~DP~t~~ 588 (652)
T COG4867 518 ---TAAEL-----TGLAGVYEQG-TNLHHALALAGRHLRRHAGAQPVVLVVTDGEPTAHLEDGDGTSVFFDYPPDPRTIA 588 (652)
T ss_pred ---CHHHH-----hcCCCccccc-cchHHHHHHHHHHHHhCcccCceEEEEeCCCccccccCCCCceEecCCCCChhHHH
Confidence 11111 1223333333 89999999998888887777788899999998753322222 2222 245
Q ss_pred HHHHHHHHhcCCCcEEEEEeccC
Q 015418 252 KTVDAIVKASELPLSIVLVGVGD 274 (407)
Q Consensus 252 eTidaIv~AS~lPLSII~VGVGd 274 (407)
.|+..+-++.+.-+-|-+.=+|.
T Consensus 589 ~Tvr~~d~~~r~G~q~t~FrLg~ 611 (652)
T COG4867 589 HTVRGFDDMARLGAQVTIFRLGS 611 (652)
T ss_pred HHHHHHHHHHhccceeeEEeecC
Confidence 56666666666666666655554
No 85
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=20.28 E-value=1.9e+02 Score=29.75 Aligned_cols=47 Identities=17% Similarity=0.380 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhcCCccEEEEEEeCCccccccccccCCCChhHHHHHHHHHHhcCCCcEE
Q 015418 207 APVIEMAMSIVEQSGGQYHVLLIIADGQVTRSVDTVRGCLSPQEQKTVDAIVKASELPLSI 267 (407)
Q Consensus 207 APVI~~ai~ive~s~~~Y~VLLIITDG~Itds~d~~~~~l~~d~~eTidaIv~AS~lPLSI 267 (407)
..+|++..+++++++.++ ++=|+.|..- .|++.++.|.+.+++||+|
T Consensus 55 e~Li~~~~elsd~tg~p~-~~~v~~~~~e-------------am~k~I~~v~~~~d~Pl~I 101 (308)
T PRK00979 55 EALINRQEELSDKTGNPA-LLDVVGESPE-------------AMEKYIDFVSEITDLPFLI 101 (308)
T ss_pred HHHHHHHHHHHHHhCCCe-EEEEecChHH-------------HHHHHHHHHHhcCCCCEEE
Confidence 347788888888886554 4466666543 3899999999999999987
No 86
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=20.12 E-value=2.4e+02 Score=28.47 Aligned_cols=9 Identities=22% Similarity=0.110 Sum_probs=3.5
Q ss_pred HHHHHHHHh
Q 015418 211 EMAMSIVEQ 219 (407)
Q Consensus 211 ~~ai~ive~ 219 (407)
+++++.+++
T Consensus 67 ~~~~~~~~~ 75 (349)
T cd08550 67 VKALCGAEE 75 (349)
T ss_pred HHHHHHHHh
Confidence 333344433
Done!