Query 015420
Match_columns 407
No_of_seqs 245 out of 1331
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 12:18:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015420.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015420hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i2j_A Signaling peptide UA159 8.9 2E+02 0.0069 16.1 1.8 19 271-289 2-20 (26)
2 4hfv_A Uncharacterized protein 5.2 3.8E+02 0.013 23.3 2.7 45 247-301 102-146 (190)
3 3si5_X Protein CASC5; BUBR1-bl 4.6 3.6E+02 0.012 15.1 1.3 11 165-175 11-21 (24)
4 2bs2_C Quinol-fumarate reducta 4.3 9.8E+02 0.033 21.4 5.1 41 356-398 24-67 (256)
5 1lbj_A Motilin; A-helix, B-tur 4.1 3.6E+02 0.012 15.4 1.2 10 163-172 3-12 (26)
6 3dvk_B Voltage-dependent R-typ 3.8 2.2E+02 0.0074 16.1 0.0 13 268-280 7-19 (23)
7 1wn8_A Kalata B3/B6, oantr pro 3.6 5.6E+02 0.019 14.5 1.7 20 385-404 5-24 (26)
8 1rij_A E6APN1 peptide; Trp-CAG 3.4 4E+02 0.014 14.9 0.9 7 284-290 6-12 (26)
9 2l5y_A Stromal interaction mol 3.1 4.6E+02 0.016 21.8 1.4 23 270-292 63-94 (150)
10 2k60_A Protein (stromal intera 2.5 5.2E+02 0.018 21.5 1.1 24 270-293 63-95 (150)
No 1
>2i2j_A Signaling peptide UA159SP; helix, signaling protein; NMR {Synthetic}
Probab=8.90 E-value=2e+02 Score=16.11 Aligned_cols=19 Identities=32% Similarity=0.509 Sum_probs=14.3
Q ss_pred cchHHHHhhhhhhHHHHhh
Q 015420 271 HNLETFWKNWHASFNKWLV 289 (407)
Q Consensus 271 ~s~~~fWr~Whisl~~WLr 289 (407)
-|++.|.|-+|+|+.+=|-
T Consensus 2 gslstffrlfnrsftqalg 20 (26)
T 2i2j_A 2 GSLSTFFRLFNRSFTQALG 20 (26)
T ss_pred ccHHHHHHHHhHHHHHHhc
Confidence 4678888999988876543
No 2
>4hfv_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, effector, unknown function; HET: CIT; 1.90A {Legionella pneumophila subsp}
Probab=5.21 E-value=3.8e+02 Score=23.33 Aligned_cols=45 Identities=16% Similarity=0.398 Sum_probs=29.9
Q ss_pred HHHhhHhhcccccCCCCccccccccchHHHHhhhhhhHHHHhhceeeeeccCChh
Q 015420 247 YFRLWSLICGIEAPENMPRCVNNCHNLETFWKNWHASFNKWLVRYMYIPLGGSQK 301 (407)
Q Consensus 247 ~a~g~a~l~Gi~~p~Nf~~~~~~a~s~~~fWr~Whisl~~WLr~YvY~pl~g~~~ 301 (407)
+..+.+...|++- +|.|.+ +.+. ..+..++.++|.+||.| ..+|+
T Consensus 102 l~~~L~~~l~i~~-en~Pd~----~Dl~----~~~~Aln~Fmr~~i~~~-~d~rk 146 (190)
T 4hfv_A 102 FYKSLTISLDLNK-DNNPNR----EDLA----DMYSALEKFLRSHVYKN-SDPRK 146 (190)
T ss_dssp HHHHHHHHTTCBT-TBCCCH----HHHH----HHHHHHHHHHHHTTBGG-GCGGG
T ss_pred HHHHHHhhcCCcc-ccCCCH----HHHH----HHHHHHHHHHHHHHhcC-Ccccc
Confidence 4445577778873 565543 2232 35889999999999999 34443
No 3
>3si5_X Protein CASC5; BUBR1-blinkin complex, mitotic checkpoint, BUBR1, blinkin/KN chromosome segregation, cell cycle; 2.20A {Homo sapiens}
Probab=4.56 E-value=3.6e+02 Score=15.14 Aligned_cols=11 Identities=45% Similarity=0.848 Sum_probs=6.2
Q ss_pred ccHHHHHHHhc
Q 015420 165 ISFNAFASQLE 175 (407)
Q Consensus 165 ~~y~~f~~q~~ 175 (407)
+.++||+..++
T Consensus 11 infndFIKRLK 21 (24)
T 3si5_X 11 IDFNDFIKRLK 21 (26)
T ss_pred ccHHHHHHHHh
Confidence 35566665554
No 4
>2bs2_C Quinol-fumarate reductase diheme cytochrome B subunit C; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: f.21.2.1 PDB: 1qlb_C* 1e7p_C* 2bs3_C* 2bs4_C*
Probab=4.33 E-value=9.8e+02 Score=21.44 Aligned_cols=41 Identities=7% Similarity=0.020 Sum_probs=28.5
Q ss_pred chhHHHHHHHHHHHHHHHHH---HHhhhhccchhhHHHHHHHHhcc
Q 015420 356 FLVRELRAFAGSITITCLMI---ANLVGYVIGPSGVNWLMSQFLTR 398 (407)
Q Consensus 356 ~~~r~~~a~~~~~~~~~~~~---~nl~~~~~g~~~~~~~~~~~~~~ 398 (407)
...|+++++.|.+-..+++. .|+.. ..|+|..++ +.+.++.
T Consensus 24 a~~~~lmalTGliL~lFL~~Hm~~N~~i-l~G~eafn~-~a~fl~~ 67 (256)
T 2bs2_C 24 AKLDWWQSATGLFLGLFMIGHMFFVSTI-LLGDNVMLW-VTKKFEL 67 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGG-GTCHHHHHH-HHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCHHHHHH-HHHHHhc
Confidence 35788899999997777765 56654 569987764 4455544
No 5
>1lbj_A Motilin; A-helix, B-turn of type I, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=4.13 E-value=3.6e+02 Score=15.40 Aligned_cols=10 Identities=20% Similarity=0.707 Sum_probs=8.2
Q ss_pred ccccHHHHHH
Q 015420 163 PIISFNAFAS 172 (407)
Q Consensus 163 Pi~~y~~f~~ 172 (407)
||++|.|..+
T Consensus 3 PiFt~selqr 12 (26)
T 1lbj_A 3 PIFTYGELQR 12 (26)
T ss_dssp CTTCHHHHHH
T ss_pred ceeeHHHHHH
Confidence 8999999854
No 6
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=3.75 E-value=2.2e+02 Score=16.09 Aligned_cols=13 Identities=8% Similarity=0.153 Sum_probs=8.4
Q ss_pred ccccchHHHHhhh
Q 015420 268 NNCHNLETFWKNW 280 (407)
Q Consensus 268 ~~a~s~~~fWr~W 280 (407)
|.+.-+.|+||++
T Consensus 7 YA~llI~d~~r~~ 19 (23)
T 3dvk_B 7 YAAMMIMDYYKQS 19 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455667777765
No 7
>1wn8_A Kalata B3/B6, oantr protein; helix, plant protein; NMR {Synthetic} SCOP: j.113.1.1
Probab=3.61 E-value=5.6e+02 Score=14.47 Aligned_cols=20 Identities=5% Similarity=-0.059 Sum_probs=11.3
Q ss_pred hhhHHHHHHHHhcccCcceE
Q 015420 385 PSGVNWLMSQFLTREGTLIC 404 (407)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~ 404 (407)
++.+..+.-+-+...|+|.|
T Consensus 5 sett~~~flkemqlkglpvc 24 (26)
T 1wn8_A 5 SETTLTMFLKEMQLKGLPXX 24 (26)
T ss_dssp TTHHHHHHHHHHHHTTCC--
T ss_pred hHHHHHHHHHHHHhcCCCCC
Confidence 34455555566667788877
No 8
>1rij_A E6APN1 peptide; Trp-CAGE, E6-binding domain, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.32.1.1
Probab=3.43 E-value=4e+02 Score=14.88 Aligned_cols=7 Identities=29% Similarity=0.956 Sum_probs=4.8
Q ss_pred HHHHhhc
Q 015420 284 FNKWLVR 290 (407)
Q Consensus 284 l~~WLr~ 290 (407)
+.+||+|
T Consensus 6 lgqwlkd 12 (26)
T 1rij_A 6 LGQWLKD 12 (26)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 5677776
No 9
>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE calcium entry, signaling protein; NMR {Homo sapiens}
Probab=3.05 E-value=4.6e+02 Score=21.84 Aligned_cols=23 Identities=30% Similarity=0.923 Sum_probs=17.8
Q ss_pred ccchHHHHhhhhhhH---------HHHhhcee
Q 015420 270 CHNLETFWKNWHASF---------NKWLVRYM 292 (407)
Q Consensus 270 a~s~~~fWr~Whisl---------~~WLr~Yv 292 (407)
--|..|+|++|-.+- ..||++++
T Consensus 63 ~Isv~eLw~~W~~s~V~nWTvedV~~WL~~~v 94 (150)
T 2l5y_A 63 HITIEDLWKRWKTSEVHNWTLEDTLQWLIEFV 94 (150)
T ss_dssp CBCHHHHHHHHHTSHHHHCCHHHHHHHHHHHT
T ss_pred eeeHHHHHHHHccCcchhCCHHHHHHHHHHcC
Confidence 457899999997653 47888876
No 10
>2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM domain, EF-SAM, STIM1, store operated calcium entry regulator, SOCE; NMR {Homo sapiens}
Probab=2.51 E-value=5.2e+02 Score=21.49 Aligned_cols=24 Identities=33% Similarity=0.930 Sum_probs=18.0
Q ss_pred ccchHHHHhhhhhh---------HHHHhhceee
Q 015420 270 CHNLETFWKNWHAS---------FNKWLVRYMY 293 (407)
Q Consensus 270 a~s~~~fWr~Whis---------l~~WLr~YvY 293 (407)
--|..|+|++|-.+ +..||++++=
T Consensus 63 ~Isv~eLw~~W~~s~V~nWTvedV~~WL~~~v~ 95 (150)
T 2k60_A 63 LISVEDLWKAWKSSEVYNWTVDEVVQWLITYVE 95 (150)
T ss_dssp CEEHHHHHHHHHHSHHHHCCHHHHHHHHHHHHC
T ss_pred eeeHHHHHHHhccCccccCCHHHHHHHHHHcCC
Confidence 45689999999765 3478888763
Done!