Query 015420
Match_columns 407
No_of_seqs 245 out of 1331
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 12:19:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015420.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015420hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bs2c1 f.21.2.1 (C:1-254) Fum 14.7 1.1E+02 0.008 25.7 5.6 37 356-393 24-63 (254)
2 d2e74f1 f.23.25.1 (F:1-32) Pet 10.0 1.5E+02 0.011 16.2 3.1 16 6-21 11-26 (32)
3 d1rmka_ g.3.6.1 (A:) Conotoxin 5.2 66 0.0048 17.5 -0.0 17 149-165 13-29 (31)
4 d2hjja1 d.50.3.3 (A:10-75) Hyp 3.4 91 0.0066 20.6 -0.5 21 272-292 36-58 (66)
5 d1q90n_ f.23.27.1 (N:) PetN su 3.3 4.1E+02 0.03 14.2 2.6 10 304-313 11-20 (31)
6 d1zk8a2 a.121.1.1 (A:78-182) T 3.1 2.8E+02 0.021 18.8 2.1 14 322-335 64-77 (105)
7 d1jjcb1 a.6.1.1 (B:1-38,B:152- 3.0 1.6E+02 0.012 19.7 0.4 11 285-295 5-15 (77)
8 d1x7fa2 c.1.8.12 (A:1-244) Out 2.9 2.8E+02 0.02 22.9 2.1 31 255-291 141-172 (244)
9 d2fhza1 d.311.1.1 (A:27-109) C 2.6 1.4E+02 0.01 20.5 -0.3 30 249-278 38-67 (83)
10 d1v54l_ f.23.6.1 (L:) Mitochon 2.5 5.6E+02 0.041 15.2 2.6 17 299-315 16-32 (46)
No 1
>d2bs2c1 f.21.2.1 (C:1-254) Fumarate reductase respiratory complex cytochrome b subunit, FrdC {Wolinella succinogenes [TaxId: 844]}
Probab=14.68 E-value=1.1e+02 Score=25.65 Aligned_cols=37 Identities=8% Similarity=0.025 Sum_probs=27.8
Q ss_pred chhHHHHHHHHHHHHHHHHH---HHhhhhccchhhHHHHHH
Q 015420 356 FLVRELRAFAGSITITCLMI---ANLVGYVIGPSGVNWLMS 393 (407)
Q Consensus 356 ~~~r~~~a~~~~~~~~~~~~---~nl~~~~~g~~~~~~~~~ 393 (407)
.+.|+++++.|.+-..+++. .|+.. ..|+|+.++...
T Consensus 24 ~~l~~l~slTGlvL~lFl~~Hm~~n~~i-l~g~eafn~~a~ 63 (254)
T d2bs2c1 24 AKLDWWQSATGLFLGLFMIGHMFFVSTI-LLGDNVMLWVTK 63 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGG-GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCHHHHHHHHH
Confidence 45788999999997777765 67764 789997775544
No 2
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=9.95 E-value=1.5e+02 Score=16.20 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhhhHHH
Q 015420 6 LFISFIYLFYLHGACV 21 (407)
Q Consensus 6 l~~sl~F~~~~~g~~~ 21 (407)
+-++++|..|..|.-+
T Consensus 11 lsfglifvgwglgall 26 (32)
T d2e74f1 11 LSFGLIFVGWGLGVLL 26 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhHHHHHH
Confidence 4478888887777643
No 3
>d1rmka_ g.3.6.1 (A:) Conotoxin {Marble cone (Conus marmoreus), mrVIb [TaxId: 42752]}
Probab=5.18 E-value=66 Score=17.50 Aligned_cols=17 Identities=29% Similarity=0.641 Sum_probs=13.2
Q ss_pred HHHHHHhhhhhhhcccc
Q 015420 149 YLCYLVYAPLYISGPII 165 (407)
Q Consensus 149 ~l~Yv~ffP~l~aGPi~ 165 (407)
.+.|+..-|.++.||.+
T Consensus 13 i~gfiyccpglicgpfv 29 (31)
T d1rmka_ 13 ILGFVYCCPGLICGPFV 29 (31)
T ss_dssp TTCCCEESTTCCBCSSS
T ss_pred eeeeeeeCCCcccccee
Confidence 45677788999999975
No 4
>d2hjja1 d.50.3.3 (A:10-75) Hypothetical protein YkfF {Escherichia coli [TaxId: 562]}
Probab=3.38 E-value=91 Score=20.55 Aligned_cols=21 Identities=24% Similarity=0.610 Sum_probs=11.5
Q ss_pred chHHHHhhhhhh--HHHHhhcee
Q 015420 272 NLETFWKNWHAS--FNKWLVRYM 292 (407)
Q Consensus 272 s~~~fWr~Whis--l~~WLr~Yv 292 (407)
.=+-.||.||-- -..||-+||
T Consensus 36 eg~mvWR~wNfEp~Ag~~lNryi 58 (66)
T d2hjja1 36 EGRMVWRAWNFEPDAGEGLNRYI 58 (66)
T ss_dssp SCCEEEEEESSSTTHHHHHHHHH
T ss_pred CCcEEEEEeccCCCHHHHHHHHH
Confidence 345568888742 344444443
No 5
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.30 E-value=4.1e+02 Score=14.25 Aligned_cols=10 Identities=20% Similarity=0.434 Sum_probs=6.1
Q ss_pred HHHHHHHHHH
Q 015420 304 YNIWAIFTFV 313 (407)
Q Consensus 304 ~~~~~tf~~~ 313 (407)
.++++||.+|
T Consensus 11 aa~~atfsfs 20 (31)
T d1q90n_ 11 AATCVMFSFS 20 (31)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhheee
Confidence 4666666654
No 6
>d1zk8a2 a.121.1.1 (A:78-182) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]}
Probab=3.05 E-value=2.8e+02 Score=18.80 Aligned_cols=14 Identities=7% Similarity=-0.341 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHH
Q 015420 322 KLLSWAWLTCLFFI 335 (407)
Q Consensus 322 ~~~~w~~~~~~~~~ 335 (407)
...+|+.+||+...
T Consensus 64 a~~lWa~vHG~~~L 77 (105)
T d1zk8a2 64 TRGFRSICHGFASI 77 (105)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHH
Confidence 45689999997644
No 7
>d1jjcb1 a.6.1.1 (B:1-38,B:152-190) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=2.96 E-value=1.6e+02 Score=19.73 Aligned_cols=11 Identities=27% Similarity=0.431 Sum_probs=7.6
Q ss_pred HHHhhceeeee
Q 015420 285 NKWLVRYMYIP 295 (407)
Q Consensus 285 ~~WLr~YvY~p 295 (407)
.+||++||=.+
T Consensus 5 ~~WLke~v~~~ 15 (77)
T d1jjcb1 5 FSWLKAYVPEL 15 (77)
T ss_dssp HHHHTTTSTTC
T ss_pred HHHHHHHcCCC
Confidence 46888888444
No 8
>d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain {Bacillus cereus [TaxId: 1396]}
Probab=2.88 E-value=2.8e+02 Score=22.91 Aligned_cols=31 Identities=10% Similarity=0.111 Sum_probs=21.9
Q ss_pred cccccCCCC-ccccccccchHHHHhhhhhhHHHHhhce
Q 015420 255 CGIEAPENM-PRCVNNCHNLETFWKNWHASFNKWLVRY 291 (407)
Q Consensus 255 ~Gi~~p~Nf-~~~~~~a~s~~~fWr~Whisl~~WLr~Y 291 (407)
..+.--.|| ||| ++.-|...| ..-|+|+++|
T Consensus 141 ~~l~acHNFYPr~-~TGLs~~~f-----~~~n~~~k~~ 172 (244)
T d1x7fa2 141 SALIGCHNFYPQK-FTGLPYDYF-----IRCSERFKKH 172 (244)
T ss_dssp GGEEEECCCBCST-TCSBCHHHH-----HHHHHHHHHT
T ss_pred hheEEeeccCCCC-CCCCCHHHH-----HHHHHHHHHc
Confidence 344445698 998 788887766 4467888877
No 9
>d2fhza1 d.311.1.1 (A:27-109) Colicin E5 immunity protein ImmE5 {Escherichia coli [TaxId: 562]}
Probab=2.64 E-value=1.4e+02 Score=20.51 Aligned_cols=30 Identities=10% Similarity=-0.254 Sum_probs=18.7
Q ss_pred HhhHhhcccccCCCCccccccccchHHHHh
Q 015420 249 RLWSLICGIEAPENMPRCVNNCHNLETFWK 278 (407)
Q Consensus 249 ~g~a~l~Gi~~p~Nf~~~~~~a~s~~~fWr 278 (407)
++-|..+|.++|++-..--++.+.-.|+-|
T Consensus 38 ~~d~~Wdg~~p~~~~~~i~~NN~~A~E~i~ 67 (83)
T d2fhza1 38 DSSASWTYDMPEEYKSKIPENNRLAIENIK 67 (83)
T ss_dssp CGGGCEECCCCSSCGGGHHHHHHHHHHHHH
T ss_pred ccceeecCCCCccchhhhhhhhHHHHHHhh
Confidence 445778899988776443355555555544
No 10
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.47 E-value=5.6e+02 Score=15.22 Aligned_cols=17 Identities=12% Similarity=0.186 Sum_probs=11.6
Q ss_pred ChhhHHHHHHHHHHHHH
Q 015420 299 SQKKLYNIWAIFTFVAV 315 (407)
Q Consensus 299 ~~~~~~~~~~tf~~~~~ 315 (407)
||-+..++++.|.-||+
T Consensus 16 Nk~rLla~m~~~fGsgf 32 (46)
T d1v54l_ 16 NKWRLLAMMTLFFGSGF 32 (46)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccc
Confidence 44467788888777764
Done!