BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015421
(407 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B8FBS0|MURD_DESAA UDP-N-acetylmuramoylalanine--D-glutamate ligase
OS=Desulfatibacillum alkenivorans (strain AK-01) GN=murD
PE=3 SV=1
Length = 450
Score = 167 bits (422), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 126/387 (32%), Positives = 200/387 (51%), Gaps = 39/387 (10%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L + G V+ E++ A++ I I+AVTGTNGK+TV + +G+M+ GI AFVGGN
Sbjct: 85 LEAAREKGVPVIGEVELASRFI--QAPIIAVTGTNGKTTVTSLIGEMMEASGISAFVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+GNPL + + K QV V E+SS+Q++ + F P V+++ N+T DH++R+
Sbjct: 143 IGNPL-------VNYAKGEDKAQVVVAEISSFQLDTI-ESFAPKVALLTNVTEDHMDRYD 194
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
M+ YA +K +F + +L G + A+ G W F G + + EA A
Sbjct: 195 GMEGYAASKARVFMNQTGADFAILN-GCDKWSRAMCGGIKASQWF--FTG-REEAEAGIA 250
Query: 198 SFEVPAVGVVSQLQLH------NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251
A+ + Q H M + G HN NAA AAL+ VE + I+
Sbjct: 251 -MNAGAMDFFTGAQKHWSLSLKKMTLSGEHNKENAAAAALAAYAAG--ASVEGIQGAIDA 307
Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQES 311
+ PHR++ V R++ V + DDSKATN++A L L+G + L ++ G++
Sbjct: 308 FKGLPHRLEFV-REVMDVKYYDDSKATNVDAV---LRALEGFNAPVHL-----IMGGRDK 358
Query: 312 NG-FEKLIEPLNHH--RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMAT 368
G F L + + R +T +G++ T +G S+ ++ AV A+R A
Sbjct: 359 GGHFRDLKDMVEQKAARLYVTGEAAGII---TSALSG-SVEVVQAGTIEKAVEFAKRAAR 414
Query: 369 NGDAIVLSPGCASFDEFRNFEHRGMVF 395
G+ +VLSPGCASFD+++N++ RG F
Sbjct: 415 PGEVVVLSPGCASFDQYKNYKERGKDF 441
>sp|Q6AJ52|MURD_DESPS UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Desulfotalea
psychrophila (strain LSv54 / DSM 12343) GN=murD PE=3
SV=1
Length = 456
Score = 166 bits (419), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 125/382 (32%), Positives = 188/382 (49%), Gaps = 29/382 (7%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
LA L ++G +V+ EL AA V+ R ++A+TGTNGK+TV + VG +L G FVGGN
Sbjct: 91 LARLRRAGVQVLGELALAAPVLDR--PVVAITGTNGKTTVTSLVGDLLRASGKRVFVGGN 148
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G PL + L SS + V V+EVSS+Q+E+ F P ++++LNL+PDHL+RH
Sbjct: 149 IGVPL-------LDLLSSGDEVDVIVLEVSSFQLELAGD-FSPHIALLLNLSPDHLDRHG 200
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
+ Y K HLF T + ++ G+ L G ++ F D
Sbjct: 201 DLAGYRAAKMHLFQKQGMTDIAIVS-GDDPLCLLSDGCGEASRYLFGFSAAS-DISVAAG 258
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG-VDVEALNSTIEILRTPP 256
FE G L + + R + NAA AA L D+E I
Sbjct: 259 HFEFDFAGQREIYSLRDSALDNRTGWLNAAPAAFIARSLACAKADIE---RGIAAFTLDA 315
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEK 316
HRM+ V I GV + +DSKATN A + L L + +++ GG+ K + +
Sbjct: 316 HRMEPVA-SIAGVQYYNDSKATNTGAVISALQQLV--RVILIAGGRDK------GDNYRL 366
Query: 317 LIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVL 375
L E + H R +I G + L+ L + + + ++ +AV+ A A GD+++L
Sbjct: 367 LREAVAGHVRTLICIGEATPLLVAALED---VVQVYRATSLAEAVSLAASFAEEGDSVLL 423
Query: 376 SPGCASFDEFRNFEHRGMVFQE 397
SP CASFD F N++ RG F+
Sbjct: 424 SPACASFDMFANYQDRGEQFRR 445
>sp|Q2IG29|MURD_ANADE UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Anaeromyxobacter
dehalogenans (strain 2CP-C) GN=murD PE=3 SV=1
Length = 462
Score = 165 bits (417), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 126/395 (31%), Positives = 194/395 (49%), Gaps = 41/395 (10%)
Query: 22 LQSGKR----VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQML-NHLGIEAFVGG 76
+Q+ +R V E++ AA+ + + I+ +TGTNGKST G +L H FVGG
Sbjct: 87 IQAARRRGVPVWGEVELAARFL-GGLPIVGITGTNGKSTTTALTGALLARHR--RTFVGG 143
Query: 77 NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH 136
NLG PLSE S +P AVVE+SS+Q+E + F V+ VLN+TPDHL+R+
Sbjct: 144 NLGTPLSELVL------SGEPA-AAAVVELSSFQLEGIER-FRARVAAVLNVTPDHLDRY 195
Query: 137 KTMKNYALTKCHLFSHMVNTKLGLLPFGNQH---LNEAIKGHRFNLAWIGAFPGVKIDTE 193
+ YA K LF+ + + + + A +G + P D
Sbjct: 196 PDVDAYAAAKARLFATQEPDDVAVANARDPRALAMAGASRGDLHTFGFGAPVPASARDEG 255
Query: 194 AK-----TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
+ TA + P + QLHN + GRHN NA A L +GV EA+ +
Sbjct: 256 GEPGPGGTAIWYTPRGRAPERYQLHNRALRGRHNRENAMAAVLCAR--LMGVPGEAVQAG 313
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG--HKCVILLGGQAKVL 306
++ HR+++V + +GV WV+DSKATN+++T GL + V+++GG+ K
Sbjct: 314 LDAFPGLHHRLELVA-EGRGVEWVNDSKATNVDSTFVGLAAFPAGAPRVVLIMGGRGK-- 370
Query: 307 NGQESNGFEKLIEPLNHHR--CVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR 364
+ PL R ++T G I + L + + PC ++ AV A
Sbjct: 371 -----KAPYAPLRPLFGGRVKALLTIGEDAPAIERELGDLAPTEPC---GDLPGAVRRAA 422
Query: 365 RMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
++ GD ++LSP CAS+D+F ++E RG F+ LA
Sbjct: 423 VLSGPGDVVLLSPACASYDQFASYEERGEAFRRLA 457
>sp|A8ZXW5|MURD_DESOH UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Desulfococcus
oleovorans (strain DSM 6200 / Hxd3) GN=murD PE=3 SV=1
Length = 459
Score = 160 bits (405), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 126/380 (33%), Positives = 193/380 (50%), Gaps = 35/380 (9%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G VM E++ AA+ + + + AVTGTNGK+TV T +G ML G + FVGGN+G PL
Sbjct: 93 EKGIPVMGEMELAARFVTKPVA--AVTGTNGKTTVTTLLGDMLKASGRQVFVGGNIGAPL 150
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
I +AVVEVSS+Q++ ++ F P V+V+LN+ DHL R+ Y
Sbjct: 151 -------IGFADKGENADMAVVEVSSFQLDT-SETFRPHVAVLLNIAEDHLARYVDFNAY 202
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR-----FNLAWIGAFPGVKIDT--EAK 195
+K +F + + ++ + H+ +A KG R FN V DT E
Sbjct: 203 VRSKGRIFENQEADDVAVINGADFHVLQASKGIRSRKLTFNAGKNTQDGAVIGDTAVEIV 262
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
TA + + V S L + RHN N +AA ++ L +G VE + + ++ +
Sbjct: 263 TAGTKTATISVTSPL------MRARHNMEN--IAAATLAALAMGATVEGIQAAVDGFQGL 314
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
HR++ V I V + DDSKATN +A L + + V+LLGG+ K G + +
Sbjct: 315 RHRLEYVA-SIDDVHYFDDSKATNPDAVRRAL-EFFTSRVVLLLGGEDK---GCDYGVLK 369
Query: 316 KLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVL 375
+I R V+ FG + I + NG S+ + +M +AV A +A GDA++L
Sbjct: 370 NVIR--ERARAVVLFGAAKEKIRMAI--NG-SVSLWDAGSMAEAVRRAHELAAPGDAVLL 424
Query: 376 SPGCASFDEFRNFEHRGMVF 395
SP C+SFD + ++ HRG F
Sbjct: 425 SPACSSFDSYESYAHRGDDF 444
>sp|Q5X1S4|MURD_LEGPA UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Legionella
pneumophila (strain Paris) GN=murD PE=3 SV=1
Length = 447
Score = 160 bits (404), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 117/395 (29%), Positives = 192/395 (48%), Gaps = 63/395 (15%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
Q+G + +++ A+ I S ++A+TGTNGKSTV T VG+M G V GN+G P+
Sbjct: 87 QAGASIYGDIECLAREI--SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPV 144
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ + + + + V+E+SS+Q+++ P V+ +LN+TPDHL+RH TM+ Y
Sbjct: 145 -------LDMLDDEHHYDLWVLELSSFQLDL-TYSLSPVVATILNVTPDHLDRHHTMEAY 196
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF--E 200
K Q + K FN + P T+ K SF +
Sbjct: 197 TQAK-------------------QRIYRGAKAVLFNREDVYTVPHQSCQTDIKCISFGKD 237
Query: 201 VPAVG---VVSQ-------------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
P++G ++ Q L + ++ + G HN+ NA A G+ ++
Sbjct: 238 APSMGNWGLIEQENTTYLAKGMERLLPVESILIKGVHNWMNALAACALAEAA--GISMQH 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGG 301
+ + ++ PHR Q V R++ GV W++DSK TN+ AT + + + G K V++ GG
Sbjct: 296 ILNVLKTFPGLPHRCQWV-REVDGVGWINDSKGTNIGATISAINGIGGSMQGKIVLIAGG 354
Query: 302 QAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAV 360
Q K + F++L +P++ R ++ G I L +P ++++ AV
Sbjct: 355 QGKGAD------FQELAQPVSEFVRSIVLIGEDADKIESALAK---VVPVVRASSLEGAV 405
Query: 361 NHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
A+ A GD ++LSP CAS D FR+F HRG VF
Sbjct: 406 TIAKTCAKPGDVVLLSPACASLDMFRDFNHRGDVF 440
>sp|Q7V0A5|MURD_PROMP UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Prochlorococcus
marinus subsp. pastoris (strain CCMP1986 / MED4) GN=murD
PE=3 SV=1
Length = 473
Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 115/389 (29%), Positives = 194/389 (49%), Gaps = 33/389 (8%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G V+ E++ A + + ++I + +TGTNGK+TV + +L + A GN+G
Sbjct: 99 LKERGIVVIGEINIAWESL-KNINWIGITGTNGKTTVTHLLSHILRENNLFAPFAGNIGT 157
Query: 81 PLSEAAFHCIALPSSKPK-FQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTM 139
PL E A+ S+K K V E+SS+Q+EI P + + TPDHL+RHKT+
Sbjct: 158 PLCEIAY------STKSKNIDWIVAELSSFQIEIATHCIKPKIGIWTTFTPDHLDRHKTL 211
Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
NY K L ++ + + +Q+L E K N WI P V +++ +
Sbjct: 212 DNYFKIKNSLLKQ---SEFRIYNYDDQYLKENFKS-LLNGIWITTNPNV---SDSDHCDY 264
Query: 200 EVPAVGVVSQ-----LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254
+ + + L L N K+ G HN N +A + IG+ E + + +
Sbjct: 265 WINNENFIVERREKLLSLKNFKLKGNHNTQNLLLAVAA--ARKIGLSTERIKNALLSYEQ 322
Query: 255 PPHRMQ-IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNG 313
PHRM+ I RD + ++DSKATN +++ G+ +KG +I+ GG+ K NG +S
Sbjct: 323 LPHRMETIFQRDELEI--INDSKATNFDSSVAGINAIKGSP-IIISGGRLK--NG-DSIE 376
Query: 314 FEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATN--GD 371
+ K+I + V FG S + K ++ G ++ + +N+A N +
Sbjct: 377 WVKIINK--KAKAVFLFGESSQTLKKLILEGGFKNDILTFNDLSEVINYAYSYIKNNQSE 434
Query: 372 AIVLSPGCASFDEFRNFEHRGMVFQELAF 400
++ SP C+SFD+FR++E RG +F++L +
Sbjct: 435 TLLFSPSCSSFDQFRDYEQRGDIFKKLIY 463
>sp|Q1IKG8|MURD_KORVE UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Koribacter
versatilis (strain Ellin345) GN=murD PE=3 SV=1
Length = 453
Score = 159 bits (402), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 113/380 (29%), Positives = 185/380 (48%), Gaps = 30/380 (7%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V+ E++ AAQ +P + +A+TG+NGK+T + G +L G + VGGN+G P
Sbjct: 90 KQGIPVIGEIELAAQFVPGHV--IAITGSNGKTTTTSLCGDILQSGGKKTLVGGNIGTP- 146
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
I+ +V+E+SS+Q+E + F P ++ +LN+TPDHL+RH T + Y
Sbjct: 147 ------AISFAQLANDDTWSVLEISSFQLETIER-FRPEIAAILNITPDHLDRHGTFEKY 199
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS--FE 200
A K +F + +L N+ E K + + W VK T + F
Sbjct: 200 AAAKERIFENQREHDFAILNADNEPCVEIAKRVKSQVLWFSRQHEVKHGTFVREDKIYFR 259
Query: 201 VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
P G + + +M + G HN N V A +G+ V E + + + HR++
Sbjct: 260 DPK-GEREIMPVADMLLKGAHNVEN--VLAAVCVGVAASVAPEQIRKAVSQFKAVEHRLE 316
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP 320
++GV + +DSKATN++AT L K V L +L G++ ++
Sbjct: 317 YTA-TVKGVDYYNDSKATNVDATIKALESFS--KGVHL------ILGGKDKGSPYTVLND 367
Query: 321 LNHHRC--VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 378
L H R V T G + I + + +++AV A + A GD ++L+P
Sbjct: 368 LLHERAKTVYTIGAAAAKIEAEV----KGVEVVHAETLENAVKLASQKAVKGDVVLLAPA 423
Query: 379 CASFDEFRNFEHRGMVFQEL 398
CASFD+F+++EHRG +F+EL
Sbjct: 424 CASFDQFQSYEHRGRIFKEL 443
>sp|Q5ZSA3|MURD_LEGPH UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Legionella
pneumophila subsp. pneumophila (strain Philadelphia 1 /
ATCC 33152 / DSM 7513) GN=murD PE=3 SV=1
Length = 447
Score = 158 bits (399), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 116/395 (29%), Positives = 191/395 (48%), Gaps = 63/395 (15%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
Q+G + +++ A+ I S ++A+TGTNGKSTV T VG+M G V GN+G P+
Sbjct: 87 QAGASIYGDIECLAREI--SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPV 144
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ + + + + V+E+SS+Q+++ P V+ +LN+TPDHL+RH TM+ Y
Sbjct: 145 -------LDMLDDEHHYDLWVLELSSFQLDL-TYSLSPVVATILNVTPDHLDRHHTMEAY 196
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF--E 200
K Q + K FN + P + K SF +
Sbjct: 197 TQAK-------------------QRIYRGAKAVLFNREDVYTVPHQSCQADIKCISFGKD 237
Query: 201 VPAVG---VVSQ-------------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
P++G ++ Q L + ++ + G HN+ NA A G+ ++
Sbjct: 238 APSMGNWGLIEQENTTYLAKGMERLLPVESILIKGVHNWMNALAACALAEAA--GISMQH 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGG 301
+ + ++ PHR Q V R++ GV W++DSK TN+ AT + + + G K V++ GG
Sbjct: 296 ILNVLKTFPGLPHRCQWV-REVDGVGWINDSKGTNIGATISAINGIGGSMQGKIVLIAGG 354
Query: 302 QAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAV 360
Q K + F++L +P++ R ++ G I L +P ++++ AV
Sbjct: 355 QGKGAD------FQELAQPVSEFVRSIVLIGEDADKIESALAK---VVPVVRASSLEGAV 405
Query: 361 NHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
A+ A GD ++LSP CAS D FR+F HRG VF
Sbjct: 406 TIAKTCAKPGDVVLLSPACASLDMFRDFNHRGDVF 440
>sp|Q5WTI5|MURD_LEGPL UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Legionella
pneumophila (strain Lens) GN=murD PE=3 SV=1
Length = 447
Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 116/395 (29%), Positives = 191/395 (48%), Gaps = 63/395 (15%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
Q+G + +++ A+ I S ++A+TGTNGKSTV T VG+M G V GN+G P+
Sbjct: 87 QAGALIYGDIECLAREI--SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPV 144
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ + + + + V+E+SS+Q+++ P V+ +LN+TPDHL+RH TM+ Y
Sbjct: 145 -------LDMLDDEHHYDLWVLELSSFQLDL-TYSLSPVVATILNVTPDHLDRHHTMEAY 196
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF--E 200
K Q + K FN + P + K SF +
Sbjct: 197 TQAK-------------------QRIYRGAKAVLFNREDVYTVPHQSCQADIKCISFGKD 237
Query: 201 VPAVG---VVSQ-------------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
P++G ++ Q L + ++ + G HN+ NA A G+ ++
Sbjct: 238 APSMGNWGLIEQENTIYLAKGMERLLPVESILIKGVHNWMNALAACALAEAA--GISMQH 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGG 301
+ + ++ PHR Q V R++ GV W++DSK TN+ AT + + + G K V++ GG
Sbjct: 296 ILNVLKTFPGLPHRCQWV-REVDGVGWINDSKGTNIGATISAINGIGGSMQGKIVLIAGG 354
Query: 302 QAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAV 360
Q K + F++L +P++ R ++ G I L +P ++++ AV
Sbjct: 355 QGKGAD------FQELAQPVSEFVRSIVLIGEDADKIESALAK---VVPVVRASSLEGAV 405
Query: 361 NHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395
A+ A GD ++LSP CAS D FR+F HRG VF
Sbjct: 406 TIAKTCAKPGDVVLLSPACASLDMFRDFNHRGDVF 440
>sp|Q8R9G4|MURD_THETN UDP-N-acetylmuramoylalanine--D-glutamate ligase
OS=Thermoanaerobacter tengcongensis (strain DSM 15242 /
JCM 11007 / NBRC 100824 / MB4) GN=murD PE=3 SV=1
Length = 450
Score = 154 bits (388), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 129/390 (33%), Positives = 202/390 (51%), Gaps = 55/390 (14%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G ++ E++ A ++ I A+TGTNGK+T + +G+M + G + +V GN+G PL
Sbjct: 92 GLEILGEVELAYRL--SKAPIYAITGTNGKTTTTSLLGEMFRNAGRKVYVAGNIGYPLIY 149
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
AA A P+ V E+SS+Q+E K F P +S ++N+TPDHL+RHKT +NYA
Sbjct: 150 AALE--AGPNDH-----IVAEISSFQLETV-KEFRPKISCIINITPDHLDRHKTFENYAN 201
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K +F + + +L + + + W G+K +AK F V
Sbjct: 202 IKGRIFENQREEEYVVLNYDDP------------VTW-----GLKERAKAKVFPFSRKKV 244
Query: 205 ----GVVSQ--LQLHNMKVM--------GRHNYHNAAVAALSVLGLDIGVDVEALNSTIE 250
V + L L N KV+ G HN NA +AA SV L G++V+A+ +T+
Sbjct: 245 LENGAYVKEGFLYLQNKKVIKVEDIYIPGEHNLENA-LAASSVAYLS-GIEVDAIETTLR 302
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQE 310
+ HR++ V +I+G+ + +DSK TN +A+ + LK V++ GG K G E
Sbjct: 303 TFKGVEHRIEFVA-EIEGIKFYNDSKGTNPDASIKAIQALK-TPIVLIAGGYDK---GSE 357
Query: 311 SNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIP---CFAVANMKDAVNHARRMA 367
+ F K + R +I G + I KT + S P F V ++++AV A +A
Sbjct: 358 FDEFVKTFD--KKVRKLILIGQTAQKIKKTALK--YSYPEEDIFLVDSLEEAVRKAYEVA 413
Query: 368 TNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
GD+++LSP CAS+D F+NFE RG F++
Sbjct: 414 EKGDSVLLSPACASWDMFKNFEERGKAFKK 443
>sp|C1F460|MURD_ACIC5 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Acidobacterium
capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670)
GN=murD PE=3 SV=1
Length = 461
Score = 152 bits (385), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 120/388 (30%), Positives = 188/388 (48%), Gaps = 47/388 (12%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G ++ E++ AA+ + K LA+TG+NGK+T + G +L VGGN+G P+
Sbjct: 92 GLPIIGEVELAARFLKG--KTLAITGSNGKTTTTSLCGAILERAHQHVQVGGNIGLPV-- 147
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
IAL +V+E+SS+Q+E + F P ++V+LN+TPDHL+RH + +NY
Sbjct: 148 -----IALVDDSRDDGWSVLEISSFQLETTER-FRPGIAVILNITPDHLDRHGSFENYVA 201
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI--------GAF--PGVKIDTEA 194
K +F+ + +L + + A + W GAF G + A
Sbjct: 202 AKERIFAAQTHDDALILNADDDAASRAAARASSRIFWFSRNRVIRQGAFVHEGNILFRAA 261
Query: 195 KTASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEIL 252
+ A+ E L L + + G HN N AAV A + GV EA+ +
Sbjct: 262 EDAATE-------PILPLSEIPLKGAHNVENVLAAVCAARL----AGVSAEAIRDAVRDF 310
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN 312
R HR++ V +I GV++ +DSKATN++A + G G +L G++ N
Sbjct: 311 RAVEHRLEFVA-EIGGVSFYNDSKATNVDAARKAIEAFPG--------GIHLILGGKDKN 361
Query: 313 GFEKLIEPLNHHR--CVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG 370
+ + PL R V T G + I L ++P A + AVN A A+ G
Sbjct: 362 SDYRTLRPLMAGRVKAVYTIGSAAEKIMTHLDG---AVPLIAAGTLDLAVNLAGGAASPG 418
Query: 371 DAIVLSPGCASFDEFRNFEHRGMVFQEL 398
D ++L+P C+SFD+F N+E RG VF++L
Sbjct: 419 DVVLLAPACSSFDQFENYEQRGQVFKDL 446
>sp|A2BY75|MURD_PROM5 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Prochlorococcus
marinus (strain MIT 9515) GN=murD PE=3 SV=1
Length = 477
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 107/391 (27%), Positives = 189/391 (48%), Gaps = 41/391 (10%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G V+ E++ A + + ++I + +TGTNGK+TV + +L + A GN+G
Sbjct: 99 LKEKGIEVLGEVNIAWESL-KNINWIGITGTNGKTTVTHLLSHILRTNNLLAPFAGNIGT 157
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
PL + A+ ++ S + VA E+SSYQ+EI P + + T DHL+RHKT+
Sbjct: 158 PLCKIAY---SIKSKNIDWLVA--ELSSYQIEIATLCIKPKIGIWTTFTADHLDRHKTLD 212
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFE 200
NY K L ++ + + + HL E K G+ I T +K + +
Sbjct: 213 NYFKIKNSLLKQ---SEFRIYNYDDIHLRENFKSLS---------KGIWITTSSKQSDLD 260
Query: 201 VPAVGVVSQ----------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE 250
+ ++ L L N K+ G HN N +A + IG+ E + + +
Sbjct: 261 HCDYWINNEDFIVERQENLLSLKNFKLKGNHNTQNLLLAIAA--ARKIGLSPEKIKNALL 318
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQE 310
PHRM+ +++ + ++DSKATN +++ G+ +KG +I+ GG+ K
Sbjct: 319 SYEQLPHRMETIYQS-NKLEIINDSKATNFDSSTAGIKAIKGAP-IIISGGKLK------ 370
Query: 311 SNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATN 369
S + + + +N + V FG S + K ++ G F ++ + +N+ N
Sbjct: 371 SGSYIEWVNIINKKAKAVFLFGESSQTLKKLILEGGFKKDIFIFNDLSEVINYVYSYIEN 430
Query: 370 G--DAIVLSPGCASFDEFRNFEHRGMVFQEL 398
+ ++ SP C+SFD+FRN+E RG +F++L
Sbjct: 431 NQIETLLFSPSCSSFDQFRNYEERGDIFKKL 461
>sp|P45063|MURD_HAEIN UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=murD PE=3 SV=1
Length = 437
Score = 148 bits (373), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 119/410 (29%), Positives = 195/410 (47%), Gaps = 53/410 (12%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA L++G V+ +++ + + I + +TG+NGKSTV
Sbjct: 62 WLLESDMIVISPGLAVKTPEIQTALKAGVEVIGDIELFCRAATKPI--VGITGSNGKSTV 119
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M G++ +GGN+G P AL ++ V+E+SS+Q+E
Sbjct: 120 TTLVYEMAKAAGVKVGMGGNIGIP---------ALSLLNEDCELYVLELSSFQLETTYS- 169
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL------PFGNQHLNEA 171
+ VLN+T DH++R+ +++Y K ++ N K+G+L FG NE
Sbjct: 170 LKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYH---NAKVGVLNNEDRLTFGE---NEN 223
Query: 172 IKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
H + A A +K + + + + L ++GRHNY N + A
Sbjct: 224 QAKHTVSFAENSADYWLKTENGKQYLMVKDEVI-----LPCEEATLVGRHNYMN--ILAA 276
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+ L IG++++++ + + + HR Q+VH+ G+ W++DSKATN+ +T L L
Sbjct: 277 TALAQAIGINLDSIRTALRHFKGLDHRFQLVHQ-ANGIRWINDSKATNVGSTVAALAGLY 335
Query: 292 GH-KCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVITFGYSGVLIWKTLVNNGLSIP 349
K +LLGG K + F +L E +N H FG G L+ K S
Sbjct: 336 IEGKLHLLLGGDGKGAD------FSELAELINQPHIICYCFGRDGALLAK------FSSQ 383
Query: 350 CFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
+ M+ A+ R +GD ++LSP CAS D+F +FE RG F LA
Sbjct: 384 SYLFDTMEQAIEFLRPTLQSGDMVLLSPACASLDQFASFEKRGEEFTHLA 433
>sp|A0Q5C2|MURD_FRATN UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Francisella
tularensis subsp. novicida (strain U112) GN=murD PE=3
SV=1
Length = 417
Score = 148 bits (373), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 118/379 (31%), Positives = 181/379 (47%), Gaps = 56/379 (14%)
Query: 27 RVMSELDFAAQVIPRS-IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEA 85
+++S++D Q I + K +AVTG+NGKSTVVT +L LG ++ + GN+G P
Sbjct: 80 KIVSDIDIFYQYIKDTKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVGNIGTP---- 135
Query: 86 AFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSV--VLNLTPDHLERHKTMKNYA 143
AL KF VVEVSS+Q+++ N C + ++N++PDHL+R++ + Y
Sbjct: 136 -----ALNKIGEKFDYCVVEVSSFQIDLFN---CVRFDLGCIINVSPDHLDRYQNFEQYK 187
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPA 203
+KL L F N + H + + G + ++ +
Sbjct: 188 -----------QSKLNLAKFSNDFFVYDV--HNNGIKYAGEYQIIRGAIYRNSTKL---- 230
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVA--ALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
L + K+ G HN N V L LGLDI +A++S I+ + HR +I
Sbjct: 231 ------LDIAETKLFGEHNLENIIVVLNILDRLGLDIN---QAIDS-IKKFKGLEHRCKI 280
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILL-GGQAKVLNGQESNGFEKLIEP 320
V + + G T+++DSK TN+ AT L + K +ILL GG AK F +I+
Sbjct: 281 VKK-VNGTTYINDSKGTNVGATIAALNSITNSKNIILLLGGVAK------GGDFSLMIKS 333
Query: 321 LNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 379
L+ + + V +G I + C NMK A A + A + + ++LSP C
Sbjct: 334 LDKYVKYVYIYGADKEYIESYIKGYCKYQLC---NNMKQAFELASQKANSNEIVLLSPAC 390
Query: 380 ASFDEFRNFEHRGMVFQEL 398
ASFDEF + RG VFQ L
Sbjct: 391 ASFDEFSGYAQRGEVFQNL 409
>sp|Q2RK81|MURD_MOOTA UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Moorella
thermoacetica (strain ATCC 39073) GN=murD PE=3 SV=1
Length = 455
Score = 148 bits (373), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 124/391 (31%), Positives = 194/391 (49%), Gaps = 22/391 (5%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
LA G V SEL+ A +++P +K++A+TGTNGK+T + G++L G A VGGN
Sbjct: 83 LARARARGIPVWSELELAYRLLPPGVKVVAITGTNGKTTTTSLCGRILQEAGWPAVVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G PL + IA P S V EVSS+Q+E F P V+ +LN+TPDHL+RH
Sbjct: 143 IGIPLVK-ELQEIA-PGS-----YVVCEVSSFQLEAITS-FHPQVAAILNITPDHLDRHG 194
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIG--AFPGVKIDTEAK 195
+++NY K + ++ +L + + H G R + + P + E
Sbjct: 195 SLENYIAAKARVMAYQEARDFAILNYDDPHTRSLAGGARSRVLFFSRRERPPLGAWLEDG 254
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
++ A G V + + G HN N+ AAL L +GVD E L T++
Sbjct: 255 VICCDLGAGGTVKLCHCEELSLKGSHNLENSMAAALVA--LALGVDPEQLTRTLKTFPAV 312
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFE 315
PHR++ V +I GV +++DSK TN EAT + + + V++ GG+ K + F
Sbjct: 313 PHRLEPVA-EINGVCYINDSKGTNPEATMKAI-NAYSNPLVLIAGGRNK------GSDFT 364
Query: 316 KLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIV 374
L + + + ++ G + + + G+ + + AV A A GD ++
Sbjct: 365 LLAQQMAGRVKHLVLVGEAARELEQAARKAGID-SIYLAPDFASAVREAAGAARPGDIVM 423
Query: 375 LSPGCASFDEFRNFEHRGMVFQELAFFSKHD 405
LSP CAS+D F+N+E RG VF+ L K D
Sbjct: 424 LSPACASWDMFKNYEERGDVFKSLVLQMKDD 454
>sp|Q0AJD9|MURD_NITEC UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Nitrosomonas
eutropha (strain C91) GN=murD PE=3 SV=1
Length = 470
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 121/381 (31%), Positives = 192/381 (50%), Gaps = 24/381 (6%)
Query: 22 LQSGKRVMSELDFAA----QVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
LQ G V+ +++ A Q P KILA+TG+NGK+TV T VG+M + G + V GN
Sbjct: 88 LQQGVSVIGDIELFAIALDQHAPPGTKILAITGSNGKTTVATMVGEMARNTGWDVEVAGN 147
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G +A I + + V+E+SS+Q+E + P +VVLNL+ DHL+R++
Sbjct: 148 IGLAALDALMQRI---DTGKWPHLWVLELSSFQLETTSS-LRPNAAVVLNLSEDHLDRYR 203
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
++ YA K +F N+ + +L + + + L + + P + +
Sbjct: 204 IIEEYAAAKARIFPDPHNSCVQVLNREDARVYAMAHENSKQLTFGLSAPAFDDEFGVLPS 263
Query: 198 SFEV-PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
++ A G +++ + V G HN NA A +D+ E L + I + P
Sbjct: 264 GSDLWLAQGTTRLMKVSELAVAGLHNAANALAALALCRAIDL--PFEPLLHALHIFKGLP 321
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILL-GGQAKVLNGQESNGFE 315
HRMQ + + GVT+ DDSK+TN+ + L + K VIL+ GG K GQ+ F
Sbjct: 322 HRMQKI-AEFNGVTFYDDSKSTNVGSAVAALNGFR--KNVILIAGGDGK---GQD---FS 372
Query: 316 KLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIV 374
L +P++ H R V+ G I + + G ++P VA M +AV + +A GD+++
Sbjct: 373 PLEQPVSKHTRGVVLLGRDAEKISQAI--QGCNVPVHRVATMDEAVRVSFLLAERGDSVL 430
Query: 375 LSPGCASFDEFRNFEHRGMVF 395
LSP CAS D F N+ HR VF
Sbjct: 431 LSPACASLDMFNNYIHRAEVF 451
>sp|A5UIR0|MURD_HAEIG UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Haemophilus
influenzae (strain PittGG) GN=murD PE=3 SV=1
Length = 437
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 120/413 (29%), Positives = 196/413 (47%), Gaps = 53/413 (12%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA L++G V+ +++ + + I + +TG+NGKSTV
Sbjct: 62 WLLESDMIVISPGLAVKTPEIQTALKAGVEVIGDIELFCRAATKPI--VGITGSNGKSTV 119
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M G++ +GGN+G P AL ++ V+E+SS+Q+E
Sbjct: 120 TTLVYEMAKAAGVKVGMGGNIGIP---------ALSLLNEDCELYVLELSSFQLETTYSL 170
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL------PFGNQHLNEA 171
V+V LN+T DH++R+ +++Y K + N K+G+L FG NE
Sbjct: 171 KAAAVTV-LNVTEDHMDRYMDLEDYRQAKLRIHH---NAKVGVLNNEDRLTFGE---NEN 223
Query: 172 IKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
H + A A +K + + + + L ++GRHNY N + A
Sbjct: 224 QAKHTVSFAENSADYWLKTENGKQYLMVKDEVI-----LPCEEATLVGRHNYMN--ILAA 276
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+ L IG++++++ + + + HR Q+VH+ G+ W++DSKATN+ +T L L
Sbjct: 277 TALAQAIGINLDSIRTALRHFKGLDHRFQLVHQ-ANGIRWINDSKATNVGSTVAALAGLY 335
Query: 292 GH-KCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVITFGYSGVLIWKTLVNNGLSIP 349
K +LLGG K + F +L E +N H FG G + K S
Sbjct: 336 IEGKLHLLLGGDGKGAD------FSELAELINQPHIICYCFGRDGAQLAK------FSSQ 383
Query: 350 CFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFFS 402
+ M+ A+ R +GD ++LSP CAS D+F +FE RG F LA +S
Sbjct: 384 SYLFETMEQAIEFLRPTLQSGDMVLLSPACASLDQFASFEKRGEEFTHLAQYS 436
>sp|Q31I61|MURD_THICR UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Thiomicrospira
crunogena (strain XCL-2) GN=murD PE=3 SV=1
Length = 449
Score = 145 bits (365), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 118/390 (30%), Positives = 191/390 (48%), Gaps = 48/390 (12%)
Query: 20 CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLG 79
C+ Q G V+ +++ A+ + I +A+TG+NGKSTV T V + L G VGGN+G
Sbjct: 80 CINQ-GTEVIGDIELFARAAGKPI--VAITGSNGKSTVTTLVAEALKEAGYAVGVGGNIG 136
Query: 80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVS-VVLNLTPDHLERHKT 138
P A + P+ +F V V+E+SS+Q+E Y T++ VLN++ DH++R+
Sbjct: 137 CP----ALDLLTHPT---EFDVYVLELSSFQLE--TTYSLQTIAATVLNISEDHMDRYLA 187
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH--RFNLAWIGAFP----GVKIDT 192
+++Y K + + NT+L +LP + + A G RF L + A P G+ +
Sbjct: 188 LEDYIQAKMTILN---NTELAVLPLDFERVGIARPGDEVRFGLNYAEALPPKEYGIVMKN 244
Query: 193 EAKTASFE----VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
+E VP + Q G H+ NA A+ L +
Sbjct: 245 GQAWLGWEDHASVPVTAMAQQ---------GLHHQLNAL--AMMALCRPFDLSDAVFEKV 293
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG--HKCVILLGGQAKVL 306
++ + PHR Q+V +GV W++DSK TN+ AT T + +K VIL+ G
Sbjct: 294 LKTFKGLPHRTQVVLEQ-EGVRWINDSKGTNVGATVTAIESIKETLDGQVILIAGGV--- 349
Query: 307 NGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRM 366
G+E++ E + R I FG +I + L + + V + +AV A+ +
Sbjct: 350 -GKEADFNELGQAVVQSCRQAILFGQDKAIIAQQLPQEKIQL----VDTLSEAVLLAKTI 404
Query: 367 ATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396
A +GDA++ SP CASFD+F+N+ RG F+
Sbjct: 405 AKSGDAVLFSPACASFDQFKNYIERGNAFE 434
>sp|A6TS63|MURD_ALKMQ UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Alkaliphilus
metalliredigens (strain QYMF) GN=murD PE=3 SV=1
Length = 455
Score = 144 bits (363), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 122/396 (30%), Positives = 201/396 (50%), Gaps = 45/396 (11%)
Query: 12 QLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE 71
Q+KA G+ ++ E++ A + + R KI+A+TGTNGK+T G++ G
Sbjct: 89 QIKAQGI--------EIIGEVELAFR-LSRG-KIVAITGTNGKTTTTALTGEIFKGAGKN 138
Query: 72 AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPD 131
+V GN+G P E A + V V+EVSS+Q+E K F P V +LNLTPD
Sbjct: 139 TYVVGNIGVPFIEKALDT-------TEEDVIVIEVSSFQLE-SIKEFHPKVGTLLNLTPD 190
Query: 132 HLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG--------HRFNLAWIG 183
HL RHKT++NY K +LF + +L + + EA K R + G
Sbjct: 191 HLNRHKTIENYREAKLNLFMNQSLQDYAVLNYDDITSREAGKTLAAQKIYFSRKQILEEG 250
Query: 184 AFPGVKIDT-EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242
F ++ T + K ++V + + +K++G+HN NA A + + +GV
Sbjct: 251 VFVDNQLITIQTKEKRYDV--------IHIDEIKILGQHNLENALAA--TAMTFILGVSA 300
Query: 243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQ 302
E + + HR++ V +I+GV +++DSK TN +A+ + + ++L GGQ
Sbjct: 301 EDIAKGLRNFPGVAHRLEFVE-EIEGVKYINDSKGTNTDASIKAIEAAQA-PIILLAGGQ 358
Query: 303 AKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNH 362
K G + F K + H ++ +G + I++T ++N + V ++++AV
Sbjct: 359 DK---GGDFTDFVKAFDGKVKH--LLVYGETSDNIYETALHNNFKVVS-QVRDLEEAVIR 412
Query: 363 ARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
A+ +A GD I+LSP CAS+D + NFE RG F++L
Sbjct: 413 AKGIAQAGDTILLSPACASWDMYPNFEARGQHFKKL 448
>sp|Q11RH3|MURD_CYTH3 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Cytophaga
hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=murD
PE=3 SV=1
Length = 450
Score = 144 bits (363), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 117/397 (29%), Positives = 193/397 (48%), Gaps = 40/397 (10%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + + V+SE++FA + I K +A+TG+NGK+T +L LG
Sbjct: 76 KAPIMKLIRSKAIEVISEIEFAYRHIHPGAKFIAITGSNGKTTTTLLTHHILAQLGYSVG 135
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+GGN+G L+ H K V V+E+SS+Q++ + Y F V+V+LN+TPDH
Sbjct: 136 LGGNIGTSLARQIIH--------EKKDVYVLELSSFQLD--DMYTFKADVAVLLNITPDH 185
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI--------- 182
L+R++ +NY +K +F ++ + + + K H + ++
Sbjct: 186 LDRYEYKFENYTASKFRIFQNLTPADYYITYSEDSVIESYKKDHPVDARYVPVSLKQLYS 245
Query: 183 -GAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVD 241
GA+ ++ KT VV+ + G+HNY N +AAL+ + IG D
Sbjct: 246 AGAY------SDEKTIQIHALDDTVVT-CNTEEFPLQGKHNYIN-IMAALNA-AVSIGAD 296
Query: 242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGG 301
+ ++I+ R PHR++ V I GV +V+DSKATN+++ L +K V+++GG
Sbjct: 297 IHKSIASIKSFRNAPHRLEFVGS-IYGVKFVNDSKATNVDSVWYALDSMKT-PVVLIVGG 354
Query: 302 QAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVN 361
V G + + E L++ H V+ G + + I +M +A+
Sbjct: 355 ---VDKGNDYSQIEALVKEKVH--TVVALGKDNSKVLSGFASMVSEIK--EAHSMVEAIR 407
Query: 362 HARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
A A GD ++LSP CASFD F+N+E RG F+ L
Sbjct: 408 IAHDSAKKGDTVLLSPACASFDLFKNYEDRGTQFRNL 444
>sp|Q01Q46|MURD_SOLUE UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Solibacter
usitatus (strain Ellin6076) GN=murD PE=3 SV=1
Length = 442
Score = 141 bits (356), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 111/374 (29%), Positives = 181/374 (48%), Gaps = 25/374 (6%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G RV+ E++ AA + + + +TG+NGK+T + G +L G+ VGGN+G P++
Sbjct: 86 GVRVIGEVELAAPFL--KGRTIGITGSNGKTTTTSLTGHILREAGVPVQVGGNIGLPVT- 142
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
A+ S V+E+SS+Q+E ++ F + + LN+T +HL+RH T +NYA
Sbjct: 143 ------AMVESSRDDGWNVLELSSFQLETIHE-FRAHIGLALNVTQNHLDRHHTFENYAA 195
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K LF +L + R + W + K+D A ++
Sbjct: 196 IKGRLFETQQAGDYAVLNAEDPVCVAYAARTRATVQWFSSRK--KVDPGATLCGNKLVLF 253
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
G + ++ + + GRHN N V A ++ GV+ A+ + + R HR++ V R
Sbjct: 254 GKL-LMEAGEIPIRGRHNIEN--VLAAAIAASRAGVEHAAIAAAVRSFRAVEHRLEFV-R 309
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH 324
+ GV + +DSKAT+++AT L G VIL GG+ K L+ + L EPL
Sbjct: 310 KLNGVDFYNDSKATSVDATLKALDAFPGGLWVIL-GGKDKGLD------YAALREPLTEK 362
Query: 325 RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDE 384
G K ++P + AV HA A GD ++L+P CASFD+
Sbjct: 363 ARAAL--LIGAAAGKIAEQIAGAVPLVDAKTLDGAVRHAFAHAAPGDTVLLAPACASFDQ 420
Query: 385 FRNFEHRGMVFQEL 398
F+++EHRG F+++
Sbjct: 421 FKSYEHRGETFKQI 434
>sp|Q1AVX1|MURD_RUBXD UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Rubrobacter
xylanophilus (strain DSM 9941 / NBRC 16129) GN=murD PE=3
SV=1
Length = 440
Score = 141 bits (355), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 116/357 (32%), Positives = 173/357 (48%), Gaps = 28/357 (7%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
++ AVTGTNGK+TVV +L G+ V GN L+ C+ + V V
Sbjct: 103 RVAAVTGTNGKTTVVDMARHILRVAGVAHAVAGNSWRALT----GCL---EEVRRAGVLV 155
Query: 104 VEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162
+EVSS+Q+ +P F V+ +LN+ PDHL H + + YA K +F L LL
Sbjct: 156 LEVSSFQLHHLPPPGF--EVAALLNVRPDHLNWHSSFEEYARDKLRVFGGQGPGDLALLS 213
Query: 163 FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
+ A G R + +G + +T + + + + +L G HN
Sbjct: 214 ADDPICRRAAGGLRAEVVLVG-----EGETGVRDGRLLLRGEFLAGEREL---GFAGGHN 265
Query: 223 YHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
NA AA + +G +EA+ + R PHRMQ+V + GVT++DDSKATN A
Sbjct: 266 LKNALFAAAAAA--RLGAGLEAIREALRGYRLKPHRMQVVAEE-GGVTYIDDSKATNPAA 322
Query: 283 TCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLV 342
L+ L G V++LGG K + FE+++ L R V+ G +G + + +
Sbjct: 323 VAAALLSLGGRPAVLILGGSEKETD------FEEVLPHLGGCRAVVCQGEAGPRL-RDFL 375
Query: 343 NNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399
+ ++ AV ARR+A GDA++LSPGCASFD+F +E RG F LA
Sbjct: 376 SERWGGEVVLAGDLASAVEAARRLARPGDAVLLSPGCASFDQFSGYEERGEAFARLA 432
>sp|B0TZ72|MURD_FRAP2 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Francisella
philomiragia subsp. philomiragia (strain ATCC 25017)
GN=murD PE=3 SV=1
Length = 414
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 112/378 (29%), Positives = 182/378 (48%), Gaps = 52/378 (13%)
Query: 26 KRVMSELDFAAQVIPRS-IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
++++S++D Q I + K++AVTG+NGKST+VT + +L +G ++ + GN+G P
Sbjct: 79 QKIVSDIDLFYQSIRNTKAKMIAVTGSNGKSTIVTMLDFVLRDMGYKSILVGNIGTP--- 135
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
L KF VVEVSS+Q+++ N + V+N++ DHL+R+K + Y
Sbjct: 136 ------PLNKIGEKFDYCVVEVSSFQIDLFNSVEFD-LGCVVNVSLDHLDRYKNYEEYK- 187
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
+KL L F + H + + G + V+ T
Sbjct: 188 ----------QSKLNLAKFSKDFFVYDV--HNTGIKYAGEYQIVRGSIYKDTTKL----- 230
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
L + + G HN N V L++ G+D+ + I+ + HR +IV +
Sbjct: 231 -----LDITETNLFGEHNLENIIVV-LNIFDR-FGIDISKAVAAIKKFKGLKHRCEIV-K 282
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILL-GGQAKVLNGQESNGFEKLIEPLNH 323
+I GVT+++DSK TN+ AT L + K +ILL GG AK F + + L
Sbjct: 283 NIAGVTYINDSKGTNVGATIAALNSITSSKNIILLLGGVAK------GGDFSLMSKSLAK 336
Query: 324 H-RCVITFGYSGVLIWKTLVNNGLSIPC-FAVAN-MKDAVNHARRMATNGDAIVLSPGCA 380
+ + V +G K + N + C + + N MKDA A + A + + ++LSP CA
Sbjct: 337 YVKYVYLYGQD-----KEYIENYIKDMCRYQICNDMKDAFRLASQKAQDSEIVLLSPACA 391
Query: 381 SFDEFRNFEHRGMVFQEL 398
SFDEF + RG VF++L
Sbjct: 392 SFDEFSGYAERGEVFEKL 409
>sp|A5N4L3|MURD_CLOK5 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Clostridium
kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680)
GN=murD PE=3 SV=1
Length = 458
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 115/388 (29%), Positives = 191/388 (49%), Gaps = 44/388 (11%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G + SE++ + P KI VTG++GK+T T + +L G ++++GGN+G PL
Sbjct: 99 EKGAYITSEMEEFIRYCPA--KIYGVTGSDGKTTTTTLMYNILKKQGYKSWIGGNIGTPL 156
Query: 83 -SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE + P +V V+E+SS+Q+ N P V+V+ N++P+HL+ HK M+
Sbjct: 157 FSE-------VEEITPDDRV-VIELSSFQLMTMN--ISPEVAVITNVSPNHLDIHKDMEE 206
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y + K ++F + N+ L +L N+ L ++ G L + F + + + +
Sbjct: 207 YIMAKKNIFKYQSNSDLLVLNKDNE-LTNSMTGEA--LGKVRQFSIKEKLNKGGYLNKDS 263
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
+ +L +K+ G HN N +AA L D V++E++ HR +
Sbjct: 264 LCIDGDEVCKLSEIKLKGMHNVENL-LAAFCALKDD--VNIESMREIATTFSGVEHRCEF 320
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI--- 318
V R+I GV + +DS A++ T GL K VIL+ G G++K I
Sbjct: 321 V-REINGVKYYNDSIASSPTRTLAGLKAF--EKPVILIAG-----------GYDKKIPFD 366
Query: 319 ----EPLNHHRCVITFGYSGVLIWKTLVNNGLS----IPCFAVANMKDAVNHARRMATNG 370
E + + ++ G + I + N L IP ++ +AVN AR+++ G
Sbjct: 367 ILAEEGYSKIKTLVLMGATKYKIKEAFENLELKKHVHIPIIMANSLVEAVNSARKVSCRG 426
Query: 371 DAIVLSPGCASFDEFRNFEHRGMVFQEL 398
D + LSP CASFD F NFE RG +F+E+
Sbjct: 427 DVVTLSPACASFDMFANFEIRGNMFKEI 454
>sp|B9DY75|MURD_CLOK1 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Clostridium
kluyveri (strain NBRC 12016) GN=murD PE=3 SV=1
Length = 458
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 115/388 (29%), Positives = 191/388 (49%), Gaps = 44/388 (11%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G + SE++ + P KI VTG++GK+T T + +L G ++++GGN+G PL
Sbjct: 99 EKGAYITSEMEEFIRYCPA--KIYGVTGSDGKTTTTTLMYNILKKQGYKSWIGGNIGTPL 156
Query: 83 -SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE + P +V V+E+SS+Q+ N P V+V+ N++P+HL+ HK M+
Sbjct: 157 FSE-------VEEITPDDRV-VIELSSFQLMTMN--ISPEVAVITNVSPNHLDIHKDMEE 206
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y + K ++F + N+ L +L N+ L ++ G L + F + + + +
Sbjct: 207 YIMAKKNIFKYQSNSDLLVLNKDNE-LTNSMTGEA--LGKVRQFSIKEKLNKGGYLNKDS 263
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
+ +L +K+ G HN N +AA L D V++E++ HR +
Sbjct: 264 LCIDGDEVCKLSEIKLKGMHNVENL-LAAFCALKDD--VNIESMREIATTFSGVEHRCEF 320
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI--- 318
V R+I GV + +DS A++ T GL K VIL+ G G++K I
Sbjct: 321 V-REINGVKYYNDSIASSPTRTLAGLKAF--EKPVILIAG-----------GYDKKIPFD 366
Query: 319 ----EPLNHHRCVITFGYSGVLIWKTLVNNGLS----IPCFAVANMKDAVNHARRMATNG 370
E + + ++ G + I + N L IP ++ +AVN AR+++ G
Sbjct: 367 ILAEEGYSKIKTLVLMGATKYKIKEAFENLELKKHVHIPIIMANSLVEAVNSARKVSCRG 426
Query: 371 DAIVLSPGCASFDEFRNFEHRGMVFQEL 398
D + LSP CASFD F NFE RG +F+E+
Sbjct: 427 DVVTLSPACASFDMFANFEIRGNMFKEI 454
>sp|Q4K6J1|MURD_PSEF5 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Pseudomonas
fluorescens (strain Pf-5 / ATCC BAA-477) GN=murD PE=3
SV=1
Length = 448
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 116/372 (31%), Positives = 182/372 (48%), Gaps = 51/372 (13%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y HL H + + F
Sbjct: 162 ELSSFQLETTDQ-LGAEVATVLNISEDHMDRYSGLPAY-----HLAKHRIFRGARQVVFN 215
Query: 165 NQH------LNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMK 216
Q + E + F L+ AF G++ + K +FE + + + +K
Sbjct: 216 RQDALTRPLIGEGLPCWTFGLSKPDFKAF-GLREEDGEKYLAFEFQNL-----MPVRELK 269
Query: 217 VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
+ G HN NA A G +G+ +A+ + + HR Q V RD+ GV + +DSK
Sbjct: 270 IRGAHNQSNALAALAL--GHAVGLPFDAMLAALRTFAGLEHRCQWV-RDLDGVAYYNDSK 326
Query: 277 ATNLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFG 331
ATN+ A + D++G K V++ GG K + F+ L P+ + R VI G
Sbjct: 327 ATNVGAALAAIEGLGADIEG-KIVLIAGGDGKGAD------FKDLRGPVAANCRAVILMG 379
Query: 332 YSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHR 391
I + + G ++P V ++++AV R A GD ++LSP CASFD F+N+E R
Sbjct: 380 RDSDQIGEAI---GDAVPLIRVGSLQEAVEQCRATAQPGDVVLLSPACASFDMFKNYEDR 436
Query: 392 GMVF----QELA 399
G F +ELA
Sbjct: 437 GHQFVRIVEELA 448
>sp|B0K3H2|MURD_THEPX UDP-N-acetylmuramoylalanine--D-glutamate ligase
OS=Thermoanaerobacter sp. (strain X514) GN=murD PE=3
SV=1
Length = 454
Score = 139 bits (351), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 120/385 (31%), Positives = 196/385 (50%), Gaps = 45/385 (11%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
++ E++FA + I A+TGTNGK+T + +G+M + G + +V GN+G PL A
Sbjct: 94 ELLGEVEFAYRF--SKAPIYAITGTNGKTTTTSLLGEMFKNTGRKVYVAGNIGYPLIYAV 151
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ +++ F VA E+SS+Q+E K F P +S ++N+TPDHL+RHKT +NY K
Sbjct: 152 -----MEAAEDDFIVA--EISSFQLETI-KEFKPKISCIINITPDHLDRHKTFENYRDIK 203
Query: 147 CHLFSHMVNTKLGLLPFG--------NQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
+F + + +L + N+ R +L GA+ K S
Sbjct: 204 GRIFENQREDEYTVLNYDDPVTWSLKNKAKCRVFPFSRKSLLENGAY--------IKDGS 255
Query: 199 FEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
+ G ++ + + + G HN NA +AA SV L G+ + + +T++ + H
Sbjct: 256 IYISVNGNAEKIIDIEEIYIPGEHNLENA-LAASSVAYLS-GISADVIANTLKTFKGVEH 313
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R++ V +I GV + +DSK TN +A+ + LK V++ GG K G E F++
Sbjct: 314 RIEFVD-EINGVKFYNDSKGTNPDASIKAIQALK-TPIVLIAGGYDK---GSE---FDEF 365
Query: 318 IEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIP----CFAVANMKDAVNHARRMATNGDA 372
++ N + +I G + I T S P FA +++AV A A GD+
Sbjct: 366 VKAFNGKVKKLILIGQTAKKIRDTA--RKYSYPEDDILFA-GTLEEAVKKAYESAKEGDS 422
Query: 373 IVLSPGCASFDEFRNFEHRGMVFQE 397
++LSP CAS+D FRNFE RG +F++
Sbjct: 423 VLLSPACASWDMFRNFEERGRIFKK 447
>sp|Q8DEK8|MURD_VIBVU UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Vibrio
vulnificus (strain CMCP6) GN=murD PE=3 SV=1
Length = 442
Score = 139 bits (350), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 177/380 (46%), Gaps = 76/380 (20%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV G M N G++ +GGN+G P AL + + ++ V+
Sbjct: 110 VIAITGSNGKSTVTDLTGVMANACGVKCAIGGNIGVP---------ALDLLEQEVELYVL 160
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVN----- 155
E+SS+Q+E + + LNL+ DH++R++ M +Y K +F H +VN
Sbjct: 161 ELSSFQLETTSSLHL-VAAAFLNLSEDHMDRYQGMDDYRQAKLRIFQHAKHGVVNRDDRQ 219
Query: 156 ---------TKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
L L+ FG+ + H+ +W+ + + AS E
Sbjct: 220 TYPETSHGQQSLALVTFGSDDKEFGVISHQGE-SWL------SYNQQPILASRE------ 266
Query: 207 VSQLQLHNMKVMGRHNYHNAAV--AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+K++G+HN N V A L+ G+D + AL S + HR Q+V
Sbjct: 267 --------LKLVGQHNVANVLVVLALLTCAGIDYRKGLSALKSYTGL----THRCQVV-A 313
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
D +G+ WV+DSKATNL +T L L K +L+GG K G + + + ++ LN
Sbjct: 314 DNRGIKWVNDSKATNLASTQAALSGLNCAGKLYLLVGGDGK---GADFSPLKPILAQLNL 370
Query: 324 HRCVITFGYSGVLIWKTLVNNGLSIPCFAVAN----MKDAVNHARRMATNGDAIVLSPGC 379
C FG G +P A A M+D + H +GD ++LSP C
Sbjct: 371 QLCC--FGADGDQF----------MPLHASATRFERMEDVIEHISPQLQSGDMVMLSPAC 418
Query: 380 ASFDEFRNFEHRGMVFQELA 399
ASFD+F NF RG F ELA
Sbjct: 419 ASFDQFSNFMARGDRFAELA 438
>sp|Q7MNV3|MURD_VIBVY UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Vibrio
vulnificus (strain YJ016) GN=murD PE=3 SV=1
Length = 442
Score = 139 bits (350), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 176/380 (46%), Gaps = 76/380 (20%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV G M N G++ +GGN+G P AL + + ++ V+
Sbjct: 110 VIAITGSNGKSTVTDLTGVMANACGVKCAIGGNIGVP---------ALDLLEQEVELYVL 160
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVN----- 155
E+SS+Q+E + LNL+ DH++R++ M +Y K +F H +VN
Sbjct: 161 ELSSFQLETTTSLHL-VAAAFLNLSEDHMDRYQGMDDYRQAKLRIFQHAKHGVVNRDDRQ 219
Query: 156 ---------TKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
L L+ FG+ + H+ +W+ + + AS E
Sbjct: 220 TYPETSHGQQSLALVTFGSDDKEFGVMSHQGE-SWL------SYNQQPILASRE------ 266
Query: 207 VSQLQLHNMKVMGRHNYHNAAV--AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+K++G+HN N V A L+ G+D + AL S + HR Q+V
Sbjct: 267 --------LKLVGQHNVANVLVVLALLTCAGIDYRKGLSALKSYTGL----THRCQVV-A 313
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
D +G+ WV+DSKATNL +T L L K +L+GG K G + + + ++ LN
Sbjct: 314 DNRGIKWVNDSKATNLASTQAALSGLNCAGKLYLLVGGDGK---GADFSPLKPILAQLNL 370
Query: 324 HRCVITFGYSGVLIWKTLVNNGLSIPCFAVAN----MKDAVNHARRMATNGDAIVLSPGC 379
C FG G +P A A M+D + H +GD ++LSP C
Sbjct: 371 QLCC--FGADGDQF----------MPLHASATRFERMEDVIEHISPQLQSGDMVMLSPAC 418
Query: 380 ASFDEFRNFEHRGMVFQELA 399
ASFD+F NF RG F ELA
Sbjct: 419 ASFDQFSNFMARGDRFAELA 438
>sp|B0K8K5|MURD_THEP3 UDP-N-acetylmuramoylalanine--D-glutamate ligase
OS=Thermoanaerobacter pseudethanolicus (strain ATCC
33223 / 39E) GN=murD PE=3 SV=1
Length = 454
Score = 139 bits (350), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 120/385 (31%), Positives = 196/385 (50%), Gaps = 45/385 (11%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
++ E++FA + I A+TGTNGK+T + +G+M + G + +V GN+G PL A
Sbjct: 94 ELLGEVEFAYRF--SKAPIYAITGTNGKTTTTSLLGEMFKNTGRKVYVAGNIGYPLIYAV 151
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ +++ F VA E+SS+Q+E K F P +S ++N+TPDHL+RHKT +NY K
Sbjct: 152 -----MEAAEGDFIVA--EISSFQLETI-KEFKPKISCIINITPDHLDRHKTFENYRDIK 203
Query: 147 CHLFSHMVNTKLGLLPFG--------NQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
+F + + +L + N+ R +L GA+ K S
Sbjct: 204 GRIFENQREDEYTVLNYDDPVTWSLKNKAKCRVFPFSRKSLLENGAY--------IKDGS 255
Query: 199 FEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
+ G ++ + + + G HN NA +AA SV L G+ + + +T++ + H
Sbjct: 256 IYISVNGNAEKIIDIEEIYIPGEHNLENA-LAASSVAYLS-GISADVIANTLKTFKGVEH 313
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317
R++ V +I GV + +DSK TN +A+ + LK V++ GG K G E F++
Sbjct: 314 RIEFVD-EINGVKFYNDSKGTNPDASIKAIQALK-TPIVLIAGGYDK---GSE---FDEF 365
Query: 318 IEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIP----CFAVANMKDAVNHARRMATNGDA 372
++ N + +I G + I T S P FA +++AV A A GD+
Sbjct: 366 VKAFNGKVKKLILIGQTAKKIRDTA--RKYSYPEDDILFA-GTLEEAVKKAYESAKEGDS 422
Query: 373 IVLSPGCASFDEFRNFEHRGMVFQE 397
++LSP CAS+D FRNFE RG +F++
Sbjct: 423 VLLSPACASWDMFRNFEERGRIFKK 447
>sp|Q0TMJ3|MURD_CLOP1 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Clostridium
perfringens (strain ATCC 13124 / NCTC 8237 / Type A)
GN=murD PE=3 SV=1
Length = 458
Score = 139 bits (349), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 108/366 (29%), Positives = 176/366 (48%), Gaps = 40/366 (10%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
K+ VTG++GK+T T V ++L+ G + + GGN+G PL F I + K V
Sbjct: 118 KVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTPL----FSNIEEIKEEDK---VV 170
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SS+Q+ + V++V N+TP+HL+ HK M+ Y K ++F + L ++
Sbjct: 171 LELSSFQLMTMDVEI--DVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQRENDLLVIND 228
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
N+ K + + + D K V V + ++ + G HN
Sbjct: 229 ENEITKNLDKEAKGKVVRFSSKKTAGEDAYYKDGKLYVHGKEVCKK---DDIIIKGMHNV 285
Query: 224 HNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEAT 283
N A L+V V +E++ E HR + + R++ GV + +DS A+ T
Sbjct: 286 ENYLAAFLAVYD---EVSIESMKKVAETFGGVHHRCEFI-REVDGVKYYNDSIASTPTRT 341
Query: 284 CTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI--EPLNHH-----RCVITFGYSGVL 336
GL K VILL G G++K + EPL + + ++ FG +
Sbjct: 342 LAGLKAF--EKPVILLAG-----------GYDKHVPFEPLAYEGYEKIKAIVLFGVTKEK 388
Query: 337 I---WKTLVNN-GLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRG 392
I +K L G+ +P ++ ++++ VN A+ +A NGD I LSP CASFD F+NFE RG
Sbjct: 389 IKAAFKRLEEEKGIHVPVYSGESLEEVVNIAKSIAENGDIITLSPACASFDMFKNFEVRG 448
Query: 393 MVFQEL 398
F+E+
Sbjct: 449 DKFKEI 454
>sp|Q2G997|MURD_NOVAD UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Novosphingobium
aromaticivorans (strain DSM 12444) GN=murD PE=3 SV=1
Length = 443
Score = 138 bits (348), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 112/361 (31%), Positives = 170/361 (47%), Gaps = 51/361 (14%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
+++ +TGTNGKST V + G+ A +GGN+G P I P+ V V
Sbjct: 110 RVVGITGTNGKSTTTMLVHHICAAAGLPARLGGNIGLP--------ILGQEPLPEGGVYV 161
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SSYQ+++ C V+ ++NL+PDHL+R+ YA +K LF+ + +
Sbjct: 162 LELSSYQIDLTQSLAC-DVAALINLSPDHLDRYDGFAGYAASKARLFAMQRADQHAVFGC 220
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNM----KVMG 219
G++H ++I EA +A+ + V VV LH + G
Sbjct: 221 GDEHT-------------------LEIAREA-SATHDTGFVHVVQPSALHGQLEWPSLQG 260
Query: 220 RHNYHNAAVAALSVLGLDIGVDV--EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKA 277
HN NAA+A L I D+ AL S + + PHRM+ V + GV +V+DSKA
Sbjct: 261 PHNLQNAAIAVEIARQLGIAEDIWRSALASFVGL----PHRMERV-AEANGVLFVNDSKA 315
Query: 278 TNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLI 337
TN +T L + +LGG K S+ ++ +H T G +G
Sbjct: 316 TNPASTAPALGAYP--RIHWILGGLPK------SDNLDECAPYFDHVVAAYTIGEAGPRF 367
Query: 338 WKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
+ L +P + DAV A A GD ++LSP CASFD+FR+FE RG F++
Sbjct: 368 AEILEP---VMPVTRSEMLCDAVRQAMEAAQPGDVVMLSPACASFDQFRDFEARGDSFRQ 424
Query: 398 L 398
+
Sbjct: 425 I 425
>sp|Q3K742|MURD_PSEPF UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Pseudomonas
fluorescens (strain Pf0-1) GN=murD PE=3 SV=1
Length = 448
Score = 138 bits (348), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 117/362 (32%), Positives = 175/362 (48%), Gaps = 43/362 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGAKQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L+ AF G++ + K +FE + + + +K+
Sbjct: 221 T---RPLMGEGQPCWTFGLSKPDFKAF-GLREENGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ + HR Q V RD+ GV + +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLVALRTFAGLEHRCQWV-RDLDGVGYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL-NHHRCVITFGYS 333
N+ A + D+ G K V++ GG K G E F+ L +P+ H R VI G
Sbjct: 329 NVGAALAAIEGLGADIDG-KVVLIAGGDGK---GAE---FKDLRDPVATHCRAVILMGRD 381
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
I + + G ++P + DAV R A GD ++LSP CASFD F N+E RG
Sbjct: 382 SDKIGEAI---GDAVPLIRATTLVDAVAQCRAAAQPGDVVLLSPACASFDMFNNYEDRGH 438
Query: 394 VF 395
F
Sbjct: 439 QF 440
>sp|Q8XHM4|MURD_CLOPE UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Clostridium
perfringens (strain 13 / Type A) GN=murD PE=3 SV=1
Length = 458
Score = 138 bits (347), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 111/371 (29%), Positives = 186/371 (50%), Gaps = 50/371 (13%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
++ VTG++GK+T T V ++L+ G + + GGN+G PL F I + K V
Sbjct: 118 RVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTPL----FSNIEEIKEEDK---VV 170
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SS+Q+ + V++V N+TP+HL+ HK M+ Y K ++F + L ++
Sbjct: 171 LELSSFQLMTMDVEI--DVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQRENDLLVIND 228
Query: 164 GNQ---HLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ--LQLHNMKVM 218
N+ +L++ KG + F K TE + A ++ + V + + N+ +
Sbjct: 229 ENEITKNLDKEAKGK------VVRFSSKK--TEGEDAYYKDGKLYVHGKEVCKKDNIIIK 280
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN N A L+V V +E++ E HR + + R++ GV + +DS A+
Sbjct: 281 GMHNVENYLAAFLAVYD---EVSIESMKKVAETFGGVHHRCEFI-REVDGVKYYNDSIAS 336
Query: 279 NLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI--EPLNHH-----RCVITFG 331
T GL K VILL G G++K + EPL + + ++ FG
Sbjct: 337 TPTRTLAGLKAF--EKPVILLAG-----------GYDKHVPFEPLAYEGYEKIKAIVLFG 383
Query: 332 YSGVLI---WKTLVNN-GLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
+ I +K L G+ +P ++ ++++ VN A+ +A +GD I LSP CASFD F+N
Sbjct: 384 VTKEKIKAAFKRLEEEKGIHVPVYSGESLEEVVNIAKSIAESGDIITLSPACASFDMFKN 443
Query: 388 FEHRGMVFQEL 398
FE RG F+E+
Sbjct: 444 FEVRGDKFKEI 454
>sp|Q64ZL9|MURD_BACFR UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Bacteroides
fragilis (strain YCH46) GN=murD PE=3 SV=1
Length = 444
Score = 138 bits (347), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 110/397 (27%), Positives = 195/397 (49%), Gaps = 59/397 (14%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LREQGTPIISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ K V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEEKHDYYVIELSSFQLD--NMYNFRADIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + + P + L++ I+ H +P I E
Sbjct: 190 MQNYINAKFRITQNQTSEDAFIFWNDDPIIKRELDKHGIRAH--------LYPFSAIKEE 241
Query: 194 AKTASFEVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNST 248
A E V + ++ + + G+HN +N+ A +S L G+ E +
Sbjct: 242 GSIAYVEDHEVVITEPIAFNMEQEQLALTGQHNLYNSLAAGISANLA---GITKEDIRKA 298
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNG 308
+ + HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K
Sbjct: 299 LSDFQGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDK---- 352
Query: 309 QESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVN-------NGLSIPCFAV-ANMKDAV 360
N + + IE L +C L++ L N + L +P V MKDAV
Sbjct: 353 --GNDYTE-IEELVREKC-------SALVYLGLHNEKLHEFFDRLGLPVAEVQTGMKDAV 402
Query: 361 NHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
A ++A G+ ++LSP CASFD F+++E RG F++
Sbjct: 403 EAAYKLAKKGETVLLSPCCASFDLFKSYEDRGEQFKK 439
>sp|Q5LIJ5|MURD_BACFN UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Bacteroides
fragilis (strain ATCC 25285 / NCTC 9343) GN=murD PE=3
SV=1
Length = 444
Score = 138 bits (347), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 110/397 (27%), Positives = 195/397 (49%), Gaps = 59/397 (14%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LREQGTPIISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ K V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEEKHDYYVIELSSFQLD--NMYNFRADIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + + P + L++ I+ H +P I E
Sbjct: 190 MQNYINAKFRITQNQTSEDAFIFWNDDPIIKRELDKHGIRAH--------LYPFSAIKEE 241
Query: 194 AKTASFEVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNST 248
A E V + ++ + + G+HN +N+ A +S L G+ E +
Sbjct: 242 GSIAYVEDHEVVITEPIAFNMEQEQLALTGQHNLYNSLAAGISANLA---GITKEDIRKA 298
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNG 308
+ + HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K
Sbjct: 299 LSDFQGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDK---- 352
Query: 309 QESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVN-------NGLSIPCFAV-ANMKDAV 360
N + + IE L +C L++ L N + L +P V MKDAV
Sbjct: 353 --GNDYTE-IEELVREKC-------SALVYLGLHNEKLHEFFDRLGLPVAEVQTGMKDAV 402
Query: 361 NHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397
A ++A G+ ++LSP CASFD F+++E RG F++
Sbjct: 403 EAAYKLAKKGETVLLSPCCASFDLFKSYEDRGEQFKK 439
>sp|Q3AAE4|MURD_CARHZ UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Carboxydothermus
hydrogenoformans (strain Z-2901 / DSM 6008) GN=murD PE=3
SV=1
Length = 451
Score = 138 bits (347), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 116/401 (28%), Positives = 195/401 (48%), Gaps = 25/401 (6%)
Query: 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFV 61
W L + L +A L+ G V+ E++ A + + I+AVTGTNGK+T +++
Sbjct: 69 WELLVVSPGVPLTEEPIAYSLKEGIPVLGEIELAYKEL--KAPIIAVTGTNGKTTTTSWI 126
Query: 62 GQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPT 121
G++L G + + GN+G PL EA + ++ +EVSS+Q+E K F P
Sbjct: 127 GEVLKIAGFKTLIAGNIGYPLIEAV---------EEEWDAVSLEVSSFQLETI-KSFKPK 176
Query: 122 VSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAW 181
V+V+LNLTPDHL+RHKT++ Y K +F + T + +L + + + + + +
Sbjct: 177 VAVLLNLTPDHLDRHKTLEGYLEAKARIFINQDRTDVTVLNYDDPRIRSLGRKTPGRVFY 236
Query: 182 IGAFPGVKIDTEAKTASFEVPAVGVVSQ-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240
++ K V ++GV + + + N+ + G HN NA + GV
Sbjct: 237 FSQKEELEEGVFVKKGKIVVRSLGVEEEIIDIENLPLPGPHNLENALATVAACWSF--GV 294
Query: 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLG 300
+ + + + HR++ V +I GV +V+DSK TN ++T L + V++ G
Sbjct: 295 SGKNIERGLRNFQGVAHRLEKVA-EINGVLYVNDSKGTNPDSTIKALNSYE-RPIVLIAG 352
Query: 301 GQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDA 359
G+ K N F +L + R I G + + L G A + +DA
Sbjct: 353 GRNK------GNSFGELAREIREKVRFTILVGECREELKEALEMVGYDKYVVA-ESFEDA 405
Query: 360 VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAF 400
V A+ +A GD ++LSP AS+D F+N+E RG +F+ L
Sbjct: 406 VKKAKELARPGDVVLLSPAAASWDMFKNYEERGELFKRLVL 446
>sp|Q0SQ91|MURD_CLOPS UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Clostridium
perfringens (strain SM101 / Type A) GN=murD PE=3 SV=1
Length = 458
Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 111/371 (29%), Positives = 186/371 (50%), Gaps = 50/371 (13%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
K+ VTG++GK+T T V ++L+ G + + GGN+G PL F I + K V
Sbjct: 118 KVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTPL----FSNIEEIKEEDK---VV 170
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SS+Q+ + V++V N+TP+HL+ HK M+ Y K ++F + L ++
Sbjct: 171 LELSSFQLMTMDVEI--DVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQRENDLLVIND 228
Query: 164 GNQ---HLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ--LQLHNMKVM 218
N+ +L++ KG + F K TE + A ++ + V + + ++ +
Sbjct: 229 ENEITKNLDKEAKGK------VVRFSSKK--TEGEDAYYKDGKLYVHGKEVCKKDDIIIK 280
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN N A L+V V +E++ E HR + + R++ GV + +DS A+
Sbjct: 281 GMHNVENYLAAFLAVYD---EVSIESMKKIAETFGGVHHRCEFI-REVDGVKYYNDSIAS 336
Query: 279 NLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI--EPLNHH-----RCVITFG 331
T GL K VILL G G++K + EPL + + ++ FG
Sbjct: 337 TPTRTLAGLKAF--EKPVILLAG-----------GYDKHVPFEPLAYEGYEKIKAIVLFG 383
Query: 332 YSGVLI---WKTLVNN-GLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387
+ I +K L G+ +P ++ ++++ V+ A+ +A NGD I LSP CASFD F+N
Sbjct: 384 VTKEKIKAAFKRLEEEKGIHVPVYSGESLEEVVSIAKSIAENGDIITLSPACASFDMFKN 443
Query: 388 FEHRGMVFQEL 398
FE RG F+E+
Sbjct: 444 FEVRGDKFKEI 454
>sp|Q319C4|MURD_PROM9 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Prochlorococcus
marinus (strain MIT 9312) GN=murD PE=3 SV=1
Length = 468
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 98/381 (25%), Positives = 184/381 (48%), Gaps = 42/381 (11%)
Query: 31 ELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCI 90
E++ A +++ + + +TGTNGK+TV + +L + A GN+G PL + A+
Sbjct: 109 EINVAWEIL-KETNWIGITGTNGKTTVTHLLSHILCENKLYAPFAGNIGTPLCKYAY--- 164
Query: 91 ALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF 150
K V E+SSYQ+EI + P + + T DHLERHKT++NY K L
Sbjct: 165 --SKKYEKIDWVVAELSSYQIEISPE-VKPNIGIWTTFTEDHLERHKTLENYFNIKKSL- 220
Query: 151 SHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ- 209
+ + + + +++L + H +L+ GV I T ++F + Q
Sbjct: 221 --LEKSDFRIYNYDDKNL----RNHYSSLS-----KGVWITTSLDKSNFIQCDYWIDDQA 269
Query: 210 ---------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
+L + + G HN N + + +G+ + + ++ + PHRM+
Sbjct: 270 FIIERGKRLFKLEHFSLKGIHNLQNLLLVIAA--ARKVGLSGKKIKDSLSNYKQLPHRME 327
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP 320
++++ + ++DSKATN +++ G+ ++G + +I+ GG+ K N + + ++
Sbjct: 328 TIYKN-NDLEIINDSKATNFDSSIAGINSIEG-QIIIISGGRLK------GNKYSEWVQV 379
Query: 321 LNHH-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGD--AIVLSP 377
L +C+ FG S ++ L+N G F + +K+ +N N ++ SP
Sbjct: 380 LKQKVKCIFLFGESSKVLKMALINEGFKKDIFEFSELKELLNFVFHYLQNNKVGTLLFSP 439
Query: 378 GCASFDEFRNFEHRGMVFQEL 398
C+SFD+F+N+E RG F++L
Sbjct: 440 SCSSFDQFKNYEERGDHFKKL 460
>sp|Q4ZNY8|MURD_PSEU2 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Pseudomonas
syringae pv. syringae (strain B728a) GN=murD PE=3 SV=1
Length = 448
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 110/364 (30%), Positives = 176/364 (48%), Gaps = 43/364 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL + ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDEVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F + G
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVN----G 216
Query: 165 NQHLNEAIKGHRFNLAWIGAFP------GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
L+ + G G G++ + K +F+ + + + +KV
Sbjct: 217 QDALSRPLIGEGLPCWTFGLNKPDFHGFGLREENGEKYLAFQFENL-----MPVRELKVR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN A A LG +G+ +A+ +++ HR Q + R+ GV + +DSKAT
Sbjct: 272 GAHN--QANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWL-REHDGVHYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVITFGYS 333
N+ A + D+ G K V++ GG K + F L P+ H R + G
Sbjct: 329 NVGAALAAIEGLGSDIDG-KLVLIAGGDGKGAD------FSGLRAPVARHCRAAVLLGRD 381
Query: 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 393
LI + L G ++P V ++ AV H+ ++A GDA++LSP CAS D F+N+E RG
Sbjct: 382 AELIAQAL---GDAVPLLRVDTVQAAVEHSAKLAQCGDAVLLSPACASLDMFKNYEERGR 438
Query: 394 VFQE 397
VF +
Sbjct: 439 VFAQ 442
>sp|C4Z534|MURD_EUBE2 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Eubacterium
eligens (strain ATCC 27750 / VPI C15-48) GN=murD PE=3
SV=1
Length = 450
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 110/359 (30%), Positives = 183/359 (50%), Gaps = 25/359 (6%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
KI+A+TGTNGK+T VGQ++ + FV GN+GN ++ L +S+ + VA
Sbjct: 109 KIIAITGTNGKTTTTALVGQIIAAYNEKTFVVGNIGN-----SYTGEVLKTSEDSYTVA- 162
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E ++ F P VS +LN+TPDHL RH TM+ YA TK + + +L
Sbjct: 163 -EISSFQLETVHE-FHPIVSAILNITPDHLNRHHTMECYAWTKERISENQTKADTCVLNL 220
Query: 164 GNQHLNEAIKGHRFNLAWIGAF--PGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRH 221
+++L + + N+ W + P V + + + L +H+M ++G+H
Sbjct: 221 EDKYLTDFAPECKANVVWFSSERKPSVGAYVDGEMIKY-TDGTNDYDMLNVHDMNLLGKH 279
Query: 222 NYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATN 279
NY N AA+A G+ + +E ++ + HR++ V GV + +DSK TN
Sbjct: 280 NYENVCAAIAMTKAAGIPDDIIIE----QVKKFKAVEHRIEYVATK-NGVDYYNDSKGTN 334
Query: 280 LEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWK 339
EA + + K IL+GG G E + + K + + + ++ G + I
Sbjct: 335 PEAAVKAIEAMV--KPTILIGGGYD--KGSEFDLYVKAFK--DKVKLLVLIGQTSAKIAD 388
Query: 340 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
T G +A +M+ V+ + A +GDA++LSP CAS+ F N+E RG +F++L
Sbjct: 389 TCKKYGFENIEYA-DSMEQVVDICAKNAVSGDAVLLSPACASWGMFDNYEQRGRIFKDL 446
>sp|Q03522|MURD_BACSU UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Bacillus
subtilis (strain 168) GN=murD PE=3 SV=1
Length = 451
Score = 136 bits (343), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 113/374 (30%), Positives = 179/374 (47%), Gaps = 26/374 (6%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V +E++ A + S K + +TG+NGK+T T + +ML +A + GN+G
Sbjct: 95 KRGIPVWTEIELAYYLT--SAKFIGITGSNGKTTTTTLIYEMLKADSQKALIAGNIGTVA 152
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
SE A+H + V E+SS+Q+ + F P +S++LN+ HL+ H T +NY
Sbjct: 153 SEVAYHADG-------DEWIVTELSSFQL-MGTHAFRPEISLILNVFDAHLDYHHTRENY 204
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
K ++ H + ++ NQ ++ A I F K + +
Sbjct: 205 EKAKQKVYLHQTASDKAIV---NQDDETVVRLAEAGKAEIVPFSVSKTLEQGAYVKDSMI 261
Query: 203 AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIV 262
+ L L + + G HN N +AA++V+ G EA+ + HR+Q V
Sbjct: 262 MFNGEAILPLEEVVLPGAHNLENI-LAAIAVVKT-AGASNEAVKKVLTSFTGVKHRLQYV 319
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN 322
+ G + +DSKATN+ AT L K VILL G NGF+ L +
Sbjct: 320 -TTVNGRKFYNDSKATNILATSKALSAFD--KPVILLAGGL-----DRGNGFDDLKPYMK 371
Query: 323 HHRCVITFGYSGVLIWKTLVNNGLSIP-CFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
H + V+TFG + + K + N L I V N++ AV+ A ++ GD I+LSP CAS
Sbjct: 372 HVKAVLTFGQTAPKLEK--LGNELGIQHVKRVDNVEQAVSAAFALSNEGDVILLSPACAS 429
Query: 382 FDEFRNFEHRGMVF 395
+D+F+ FE RG +F
Sbjct: 430 WDQFKTFEERGDMF 443
>sp|Q7V5V5|MURD_PROMM UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Prochlorococcus
marinus (strain MIT 9313) GN=murD PE=3 SV=1
Length = 460
Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 117/391 (29%), Positives = 190/391 (48%), Gaps = 33/391 (8%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L L Q G + E+ A + + + +A+TGTNGK+TV + +L G+ A +GGN
Sbjct: 86 LTALRQRGIDIDGEMAVAWRSLSH-LPWIAITGTNGKTTVTHLLNHVLESNGLRAPMGGN 144
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G+ +E A + +P + V+E+SSYQ+E + P + + NLTPDHLERH
Sbjct: 145 VGHAAAEVALKWRQPNAQRPDW--LVMELSSYQIEAAPE-IAPRMGIWTNLTPDHLERHG 201
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGA-FPGVKIDTEAKT 196
T+ Y K L +++ + + L L W+ + PG T
Sbjct: 202 TLDAYRTIKRGLLE---RSEIRIFNGDDPDLRSQRSSWDKGL-WVSSEGPG----TANHR 253
Query: 197 ASFEVPAVGVVSQLQ-----LHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251
A F + A G+V + Q + + G+HN N + ++ G+ +A+ +++
Sbjct: 254 ADFWIDAEGLVREPQGALFAASALAMPGQHNLQN--LLLVTAAARQTGLPAKAIEASLRS 311
Query: 252 LRTPPHRM-QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQE 310
PHR+ Q+ H IQ ++ +DSKATN +A C GL + V+L GGQ K G
Sbjct: 312 FPGVPHRLEQLGH--IQQMSVYNDSKATNYDAACVGLKAVP-PPAVVLAGGQTK--QGDA 366
Query: 311 SNGFEKLIEPLNHHRC-VITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATN 369
S ++ L+ + C VI FG + + + +G S +N+ AV A +
Sbjct: 367 SGWLKQ----LDQNACAVILFGAGASELQELIKTSGFSGELHCCSNLNAAVTLAIPLGVE 422
Query: 370 GDA--IVLSPGCASFDEFRNFEHRGMVFQEL 398
A ++LSP CASFD++++FE RG F+ L
Sbjct: 423 RQAACLLLSPACASFDQYQDFEARGEHFRSL 453
>sp|Q6MBS4|MURD_PARUW UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Protochlamydia
amoebophila (strain UWE25) GN=murD PE=3 SV=1
Length = 444
Score = 135 bits (341), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 114/374 (30%), Positives = 182/374 (48%), Gaps = 30/374 (8%)
Query: 26 KRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEA 85
K V+ E++ + SI + VTGTNGK+TV + +LN G++A GN+G PL+
Sbjct: 96 KEVIGEIELGCRASCHSI--IGVTGTNGKTTVTLLITHILNANGLKAKALGNVGTPLTRE 153
Query: 86 AFHCIALPSSKPKFQ-VAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
FQ +AV+E+SSYQ++ + +VVLN+TPDHLER++TM+NYA
Sbjct: 154 ILTL--------DFQEIAVLELSSYQLDTFQQQVLDE-AVVLNITPDHLERYETMENYAK 204
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
+K + + K G L + E F + G P T+ + E
Sbjct: 205 SKFQIGKCL--KKSGKLFVERKAAVEYQHLLNFPHSTYGYLPSCHTYTDLCSVFLEG--- 259
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+ Q +L ++ G+ N+ + A + G+ + ++ + P HR++ V
Sbjct: 260 --MQQFEL-PLEWQGKENHDLENLLAAYAICARRGIKPQQFLQALKTFQKPSHRVEFV-L 315
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH 324
+ G+ + DDSK TN++A + + ++ V L+ G V G + + + H
Sbjct: 316 EKNGIHFYDDSKGTNIDAVMRAVQSI--NRPVFLIAG--GVDKGASYVAWLNVFK--GHV 369
Query: 325 RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDE 384
+ V G + I K L L I AN+ DAV A + A GDA++LSPGCASFD
Sbjct: 370 KKVYAIGQAANKIQKEL---SLHIRVQIEANLDDAVKQAYQDAKEGDAVLLSPGCASFDM 426
Query: 385 FRNFEHRGMVFQEL 398
F+++ HRG F+ L
Sbjct: 427 FKDYIHRGEEFKRL 440
>sp|C1CJF2|MURD_STRZP UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus
pneumoniae (strain P1031) GN=murD PE=3 SV=1
Length = 450
Score = 135 bits (341), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 108/374 (28%), Positives = 184/374 (49%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+ +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAADKAGVA--YVEATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>sp|C1C648|MURD_STRP7 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus
pneumoniae (strain 70585) GN=murD PE=3 SV=1
Length = 450
Score = 135 bits (341), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 108/374 (28%), Positives = 184/374 (49%), Gaps = 25/374 (6%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+ +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELVPDI 369
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381
+ ++ G S + + G++ ++ DA A +AT GD ++LSP AS
Sbjct: 370 TGLKKMVILGQSAERVKRAADKAGVA--YVEATDIADATRKAYELATQGDVVLLSPANAS 427
Query: 382 FDEFRNFEHRGMVF 395
+D + NFE RG +F
Sbjct: 428 WDMYANFEVRGDLF 441
>sp|A3DE94|MURD_CLOTH UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Clostridium
thermocellum (strain ATCC 27405 / DSM 1237) GN=murD PE=3
SV=1
Length = 466
Score = 135 bits (340), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 113/400 (28%), Positives = 189/400 (47%), Gaps = 62/400 (15%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V SE++ ++ P +I AVTG++GK+T T + ML G + ++GGN+G PL
Sbjct: 99 EEGTEVTSEMEVFFELCP--AEIFAVTGSDGKTTTTTLIYNMLKEQGYKCWLGGNIGIPL 156
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ K +V V+E+SS+Q+ K P V+VV N++P+HL+ HK+M+ Y
Sbjct: 157 ------LSKIEEIKDTDKV-VLELSSFQLHTMTK--SPNVAVVTNVSPNHLDVHKSMEEY 207
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIG----------------AFP 186
K ++F + +L F N E + ++ + F
Sbjct: 208 VSAKKNIFRYQSAEDRLVLNFDNDITREFAGEAKGDVVYFSRKTVLEKGAMLKDDMLVFR 267
Query: 187 GVKIDTE-AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245
+ +TE AK + +P V HN+ N+ A A + + D+ V
Sbjct: 268 DGETETEIAKASDIVIPGV--------HNV-----ENFLAATAAVIDCVDRDVIRKVATT 314
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKV 305
+ +E HR+++V R+I GV + +DS A++ T GL K K +++ GG K
Sbjct: 315 FTGVE------HRIELV-REINGVKFYNDSIASSPTRTIAGLNSFK-DKVILIAGGYDKK 366
Query: 306 LNGQESNGFEKLIEPLNHH-RCVITFGYSGVLIWKTLVNN------GLSIPCFAVANMKD 358
+ ++ L + +C++ G + I K L + G IP ++++
Sbjct: 367 I------PYDALGPVIAEKVKCLVLIGQTAPKIEKVLRDETERSGKGSDIPIKKCTSLEE 420
Query: 359 AVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
AV A R A+ GD ++LSP ASFD F+NFE RG F+E+
Sbjct: 421 AVKVAYRFASVGDVVILSPASASFDMFKNFEERGNRFKEI 460
>sp|Q87WY3|MURD_PSESM UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Pseudomonas
syringae pv. tomato (strain DC3000) GN=murD PE=3 SV=1
Length = 448
Score = 135 bits (340), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 116/369 (31%), Positives = 177/369 (47%), Gaps = 53/369 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + VS+L
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENGEKFLAFQFENLMPVSEL-- 268
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
KV G HN A A LG +G+ +A+ S++ HR Q + R+ GV +
Sbjct: 269 ---KVRGAHN--QANALAALALGHAVGLPFDAMLSSLREFTGLEHRCQWL-RERNGVDYY 322
Query: 273 DDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH-RCVI 328
+DSKATN+ A + L G K V++ GG K + F L P+ + R +
Sbjct: 323 NDSKATNVGAALAAIEGLGSDIGGKLVLIAGGDGKGAD------FSGLRAPVAKYCRAAV 376
Query: 329 TFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNF 388
G LI + L G ++P V ++ A + +A GDA++LSP CAS D F+N+
Sbjct: 377 LLGRDAELIAQAL---GDAVPLIRVDTVQAAAERSAELAQRGDAVLLSPACASLDMFKNY 433
Query: 389 EHRGMVFQE 397
E RG VF +
Sbjct: 434 EERGRVFAQ 442
>sp|Q3AZI5|MURD_SYNS9 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Synechococcus
sp. (strain CC9902) GN=murD PE=3 SV=1
Length = 462
Score = 135 bits (339), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 117/393 (29%), Positives = 182/393 (46%), Gaps = 36/393 (9%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L L Q G ++ E++ A + + I + +TGTNGK+TV + +L H GI A +GGN
Sbjct: 86 LNGLRQEGVQIRGEIELAWEAL-NDIPWVGITGTNGKTTVTHLLSHVLGHAGIVAPMGGN 144
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI-PNKYFCPTVSVVLNLTPDHLERH 136
+G ++ A + KP + V+E+SSYQ+E PN P++ + LTPDHLERH
Sbjct: 145 MGVSAADMALKIRRGETPKPDW--LVMELSSYQIEAGPN--LAPSIGIWTTLTPDHLERH 200
Query: 137 KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLA---WIGAFPGVKIDTE 193
T++ Y K H + + L F + + HR +L W+ A P D
Sbjct: 201 GTLEAYRAIK-----HSLLQRSSLAIFNGDDAD--LSAHRPSLKRGMWVKAAPPCHDD-- 251
Query: 194 AKTASFEVPAVGVVSQLQLHNM---KVM---GRHNYHNAAVAALSVLGLDIGVDVEALNS 247
A F + G V + M KV+ G HN N + ++ IG++ E +
Sbjct: 252 -PPADFWIDDAGTVQAREGGAMFPAKVLAMPGAHNRQN--LLLVTAAAAQIGLNAEQIAQ 308
Query: 248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLN 307
+E PHR++ + +DSKATN +A GL + G V+L GGQ K
Sbjct: 309 GLESFPGVPHRLENLG-STSSADVFNDSKATNYDAAAVGLQAMAG-PVVVLAGGQTK--- 363
Query: 308 GQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMA 367
N L E + V+ FG + + + ++ AV A R
Sbjct: 364 --RGNATGWLAELKSKACAVVLFGAGAEELDALIRQSNYQGQVHRCTDLSAAVAIAVRAT 421
Query: 368 T--NGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398
+ +++LSP CASFD++++FE RG F++L
Sbjct: 422 SELQASSLLLSPACASFDQYQDFEARGDHFRDL 454
>sp|Q5FUJ7|MURD_GLUOX UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Gluconobacter
oxydans (strain 621H) GN=murD PE=3 SV=2
Length = 448
Score = 135 bits (339), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 111/379 (29%), Positives = 173/379 (45%), Gaps = 46/379 (12%)
Query: 25 GKRVMSELDFAAQVIPRS---IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
G +++S+ + + + +S +AVTGTNGKST + + G GGNLG
Sbjct: 91 GIQILSDAEILYRAVRKSGSKAAFIAVTGTNGKSTTTALIAHLFTTAGRPCAAGGNLGT- 149
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ALP P V V+E+SSY +E +++ + +LNLTPDHL+RH M
Sbjct: 150 ------ASLALPL-LPDDGVYVIEMSSYMLERLDRFHA-NAACLLNLTPDHLDRHGDMAG 201
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
YA K H+F +M L ++ + W A I ++ + +V
Sbjct: 202 YAAAKAHVFDNMGPDDLAVIGMDDD--------------WCRA-----IASQVASRGVQV 242
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
+ + + GRHN N V A + +G+D A+ + ++ HR+Q
Sbjct: 243 VELDADALPPYDGPALPGRHNAQN--VGAALTIASHLGLDEAAIRTGLKSFPGLEHRLQK 300
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V + GV++++DSKATN EA L K + + GG AK + G E L
Sbjct: 301 V-AECDGVSFINDSKATNAEAVSKALAAYD--KVMWIAGGVAK------AGGIESLAPFF 351
Query: 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMA--TNGDAIVLSPGC 379
H G ++ TL +G +P ++ AV A + A N ++LSP C
Sbjct: 352 RHIAQAFLIGQDADVLAATLETHG--VPFQQCGTLEKAVPAAFKAALDENIPVVLLSPAC 409
Query: 380 ASFDEFRNFEHRGMVFQEL 398
ASFD+FR+FE RG F ++
Sbjct: 410 ASFDQFRSFEDRGSHFLQI 428
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,727,915
Number of Sequences: 539616
Number of extensions: 6102415
Number of successful extensions: 17461
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 344
Number of HSP's that attempted gapping in prelim test: 14878
Number of HSP's gapped (non-prelim): 1296
length of query: 407
length of database: 191,569,459
effective HSP length: 120
effective length of query: 287
effective length of database: 126,815,539
effective search space: 36396059693
effective search space used: 36396059693
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)