Query 015421
Match_columns 407
No_of_seqs 229 out of 1210
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 06:09:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015421.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015421hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01087 murD UDP-N-acetylmur 100.0 1.7E-65 3.6E-70 511.3 42.2 367 4-400 65-432 (433)
2 PRK01368 murD UDP-N-acetylmura 100.0 1.2E-65 2.5E-70 511.1 40.7 372 3-402 65-446 (454)
3 COG0771 MurD UDP-N-acetylmuram 100.0 1.9E-65 4.2E-70 495.6 39.6 371 4-403 72-447 (448)
4 PRK04308 murD UDP-N-acetylmura 100.0 4.2E-65 9.2E-70 509.7 41.5 374 4-402 70-445 (445)
5 PRK01710 murD UDP-N-acetylmura 100.0 7E-65 1.5E-69 508.8 41.3 373 4-402 80-458 (458)
6 PRK03803 murD UDP-N-acetylmura 100.0 1.9E-64 4.2E-69 505.3 41.8 369 4-403 71-447 (448)
7 PRK04663 murD UDP-N-acetylmura 100.0 3.6E-64 7.7E-69 501.2 40.7 364 4-402 71-437 (438)
8 PRK03369 murD UDP-N-acetylmura 100.0 6.1E-64 1.3E-68 504.3 41.0 371 3-403 72-487 (488)
9 PRK01390 murD UDP-N-acetylmura 100.0 1.5E-63 3.2E-68 500.5 41.0 375 3-403 67-459 (460)
10 PRK02705 murD UDP-N-acetylmura 100.0 3.4E-63 7.4E-68 498.4 41.8 379 4-403 71-456 (459)
11 PRK02472 murD UDP-N-acetylmura 100.0 5.9E-63 1.3E-67 495.2 42.9 378 3-405 70-447 (447)
12 PRK00141 murD UDP-N-acetylmura 100.0 1.3E-62 2.8E-67 493.3 42.4 378 3-404 76-468 (473)
13 PRK03806 murD UDP-N-acetylmura 100.0 3.5E-62 7.7E-67 487.8 40.8 367 3-402 67-437 (438)
14 PRK04690 murD UDP-N-acetylmura 100.0 7.1E-62 1.5E-66 486.9 41.6 375 3-402 71-455 (468)
15 PRK01438 murD UDP-N-acetylmura 100.0 3.1E-61 6.8E-66 486.4 41.1 379 4-404 81-478 (480)
16 PRK02006 murD UDP-N-acetylmura 100.0 1.8E-60 3.8E-65 482.0 40.9 382 3-404 71-492 (498)
17 PRK14106 murD UDP-N-acetylmura 100.0 1.2E-58 2.6E-63 464.4 41.6 377 4-401 71-449 (450)
18 PRK03815 murD UDP-N-acetylmura 100.0 1.8E-58 3.8E-63 451.8 36.0 344 4-402 57-401 (401)
19 PRK10773 murF UDP-N-acetylmura 100.0 8.4E-57 1.8E-61 449.5 28.9 365 4-404 64-449 (453)
20 COG0770 MurF UDP-N-acetylmuram 100.0 8.5E-57 1.8E-61 439.9 28.1 350 23-405 84-451 (451)
21 COG0773 MurC UDP-N-acetylmuram 100.0 1.4E-55 3E-60 422.0 34.6 357 3-385 68-449 (459)
22 PRK00683 murD UDP-N-acetylmura 100.0 1.4E-55 3E-60 437.0 34.7 351 3-403 61-415 (418)
23 TIGR01143 murF UDP-N-acetylmur 100.0 9E-56 1.9E-60 438.4 28.8 328 42-402 73-417 (417)
24 PRK14093 UDP-N-acetylmuramoyla 100.0 2.6E-55 5.7E-60 441.4 28.9 336 41-405 106-467 (479)
25 TIGR01082 murC UDP-N-acetylmur 100.0 3.3E-54 7.1E-59 431.1 36.3 360 4-386 61-444 (448)
26 PRK00421 murC UDP-N-acetylmura 100.0 4.2E-54 9.1E-59 431.8 35.8 360 4-387 69-450 (461)
27 TIGR01081 mpl UDP-N-acetylmura 100.0 2.4E-53 5.3E-58 424.8 34.9 360 3-385 62-439 (448)
28 PRK11929 putative bifunctional 100.0 1.5E-51 3.2E-56 446.8 30.8 331 42-403 602-958 (958)
29 PRK11930 putative bifunctional 100.0 6.8E-51 1.5E-55 434.0 27.1 331 41-405 105-456 (822)
30 PRK00139 murE UDP-N-acetylmura 100.0 3.7E-49 8E-54 395.5 30.3 322 42-387 94-442 (460)
31 TIGR01085 murE UDP-N-acetylmur 100.0 6.2E-49 1.3E-53 394.9 31.6 333 42-387 84-456 (464)
32 PRK14573 bifunctional D-alanyl 100.0 1E-47 2.3E-52 408.5 34.3 355 4-389 66-444 (809)
33 PRK14022 UDP-N-acetylmuramoyla 100.0 8.4E-48 1.8E-52 387.7 29.2 317 41-376 108-452 (481)
34 PRK11929 putative bifunctional 100.0 4.1E-47 8.8E-52 412.2 29.8 341 41-396 110-488 (958)
35 TIGR01499 folC folylpolyglutam 100.0 2E-45 4.4E-50 362.3 27.2 319 41-389 16-394 (397)
36 COG0769 MurE UDP-N-acetylmuram 100.0 1.8E-44 3.9E-49 357.2 31.0 336 41-387 89-457 (475)
37 TIGR02068 cya_phycin_syn cyano 100.0 2.5E-43 5.5E-48 374.3 32.8 328 41-377 477-848 (864)
38 COG0285 FolC Folylpolyglutamat 100.0 3.2E-42 6.9E-47 333.1 27.8 330 29-390 27-419 (427)
39 PRK10846 bifunctional folylpol 100.0 6.7E-42 1.5E-46 338.6 29.3 327 27-389 30-411 (416)
40 PLN02913 dihydrofolate synthet 100.0 2.3E-41 4.9E-46 340.2 30.3 343 29-388 58-504 (510)
41 PLN02881 tetrahydrofolylpolygl 100.0 4.6E-36 1E-40 297.1 28.7 329 28-389 41-525 (530)
42 PRK14016 cyanophycin synthetas 100.0 7.6E-32 1.7E-36 281.6 16.6 250 8-261 446-726 (727)
43 PF08245 Mur_ligase_M: Mur lig 100.0 4.7E-31 1E-35 233.8 15.7 176 48-235 1-188 (188)
44 KOG2525 Folylpolyglutamate syn 100.0 1.7E-29 3.6E-34 240.8 19.2 242 41-307 70-381 (496)
45 PF02875 Mur_ligase_C: Mur lig 99.3 5.6E-12 1.2E-16 97.6 5.6 77 255-334 1-82 (91)
46 COG1703 ArgK Putative periplas 95.9 0.054 1.2E-06 50.3 9.2 117 42-169 50-204 (323)
47 PF08353 DUF1727: Domain of un 94.9 0.13 2.8E-06 41.1 7.1 98 277-376 2-107 (113)
48 PRK09435 membrane ATPase/prote 92.4 2.5 5.4E-05 40.6 12.4 33 41-73 54-88 (332)
49 PRK15453 phosphoribulokinase; 91.1 0.31 6.7E-06 45.4 4.4 29 41-69 3-33 (290)
50 cd01983 Fer4_NifH The Fer4_Nif 90.9 1.4 2.9E-05 33.2 7.4 28 46-73 2-31 (99)
51 TIGR03172 probable selenium-de 90.4 0.33 7.2E-06 44.0 4.0 30 45-74 1-30 (232)
52 COG1763 MobB Molybdopterin-gua 90.3 0.8 1.7E-05 39.1 6.0 39 43-81 2-42 (161)
53 cd02040 NifH NifH gene encodes 89.8 0.45 9.7E-06 44.2 4.5 30 44-73 2-33 (270)
54 cd02117 NifH_like This family 88.3 0.6 1.3E-05 41.7 4.1 28 45-72 2-31 (212)
55 PRK13232 nifH nitrogenase redu 88.0 0.62 1.3E-05 43.5 4.1 30 44-73 2-33 (273)
56 PF00485 PRK: Phosphoribulokin 87.1 0.65 1.4E-05 40.9 3.5 27 45-71 1-29 (194)
57 PRK13235 nifH nitrogenase redu 87.0 0.79 1.7E-05 42.8 4.2 30 44-73 2-33 (274)
58 COG0132 BioD Dethiobiotin synt 86.9 0.94 2E-05 40.8 4.4 30 43-72 2-34 (223)
59 TIGR01007 eps_fam capsular exo 86.8 1.2 2.7E-05 39.4 5.1 32 41-72 15-49 (204)
60 COG1936 Predicted nucleotide k 86.7 0.57 1.2E-05 40.1 2.7 25 44-72 1-27 (180)
61 TIGR03029 EpsG chain length de 86.6 1.3 2.8E-05 41.3 5.4 32 41-72 101-135 (274)
62 PRK13849 putative crown gall t 86.6 1 2.2E-05 41.0 4.5 30 44-73 2-34 (231)
63 PRK10037 cell division protein 86.5 0.87 1.9E-05 41.9 4.2 29 44-72 2-33 (250)
64 COG2403 Predicted GTPase [Gene 86.4 0.8 1.7E-05 43.9 3.8 31 42-72 125-158 (449)
65 PRK13869 plasmid-partitioning 86.2 0.93 2E-05 44.9 4.4 32 42-73 120-154 (405)
66 COG2894 MinD Septum formation 86.1 0.77 1.7E-05 40.9 3.3 30 44-73 3-35 (272)
67 PRK13230 nitrogenase reductase 86.1 0.91 2E-05 42.5 4.1 30 44-73 2-33 (279)
68 PRK14494 putative molybdopteri 86.1 1.1 2.4E-05 40.6 4.4 33 43-75 1-35 (229)
69 PRK00652 lpxK tetraacyldisacch 86.0 1.1 2.3E-05 43.0 4.6 32 42-73 48-83 (325)
70 TIGR03371 cellulose_yhjQ cellu 85.8 1.2 2.5E-05 40.7 4.6 29 44-72 2-33 (246)
71 PHA02519 plasmid partition pro 85.7 1 2.2E-05 44.3 4.4 32 42-73 105-139 (387)
72 PHA02518 ParA-like protein; Pr 85.7 1.2 2.5E-05 39.5 4.5 29 45-73 2-33 (211)
73 PRK13705 plasmid-partitioning 85.3 1.1 2.4E-05 44.2 4.3 32 42-73 105-139 (388)
74 PRK13185 chlL protochlorophyll 85.1 1.1 2.4E-05 41.6 4.1 30 44-73 3-34 (270)
75 cd02032 Bchl_like This family 84.6 1.2 2.6E-05 41.4 4.1 28 46-73 3-32 (267)
76 TIGR00554 panK_bact pantothena 84.6 1.4 2.9E-05 41.6 4.4 28 41-68 60-89 (290)
77 TIGR03453 partition_RepA plasm 84.1 1.5 3.2E-05 43.2 4.7 32 42-73 103-137 (387)
78 cd02029 PRK_like Phosphoribulo 83.6 1.4 3E-05 40.8 3.9 26 45-70 1-28 (277)
79 TIGR02016 BchX chlorophyllide 83.5 1.4 3E-05 41.7 4.1 29 45-73 2-32 (296)
80 PRK14493 putative bifunctional 83.1 1.8 3.8E-05 40.5 4.5 32 43-75 1-34 (274)
81 PRK13234 nifH nitrogenase redu 83.0 1.6 3.6E-05 41.2 4.4 33 42-74 3-37 (295)
82 TIGR03018 pepcterm_TyrKin exop 82.5 1.9 4.2E-05 38.3 4.4 31 42-72 34-68 (207)
83 cd03116 MobB Molybdenum is an 82.3 2.3 5E-05 36.2 4.6 32 43-74 1-34 (159)
84 COG4240 Predicted kinase [Gene 82.2 2.6 5.6E-05 37.9 4.9 51 21-72 29-82 (300)
85 TIGR01968 minD_bact septum sit 82.0 1.9 4.2E-05 39.5 4.4 29 44-72 2-33 (261)
86 PRK11670 antiporter inner memb 81.7 2.1 4.5E-05 41.9 4.6 32 42-73 106-140 (369)
87 PRK13231 nitrogenase reductase 81.6 1 2.2E-05 41.7 2.3 29 44-73 3-33 (264)
88 COG0769 MurE UDP-N-acetylmuram 81.5 0.6 1.3E-05 47.2 0.8 123 12-139 34-162 (475)
89 KOG3347 Predicted nucleotide k 81.1 1.4 3.1E-05 36.9 2.7 25 42-66 6-32 (176)
90 TIGR01287 nifH nitrogenase iro 81.0 2.1 4.6E-05 39.9 4.3 29 45-73 2-32 (275)
91 PF06564 YhjQ: YhjQ protein; 81.0 1.6 3.4E-05 39.9 3.3 28 45-72 6-33 (243)
92 PRK14495 putative molybdopteri 80.8 2.3 5E-05 42.2 4.5 34 43-76 1-36 (452)
93 PF03205 MobB: Molybdopterin g 80.7 2.6 5.7E-05 35.0 4.3 30 44-73 1-32 (140)
94 COG0552 FtsY Signal recognitio 80.6 2.6 5.5E-05 40.1 4.6 32 42-73 138-171 (340)
95 COG3367 Uncharacterized conser 80.2 2.5 5.5E-05 39.8 4.4 61 13-73 109-181 (339)
96 PRK13233 nifH nitrogenase redu 80.2 2.2 4.7E-05 39.8 4.1 31 44-74 3-36 (275)
97 COG1072 CoaA Panthothenate kin 80.0 4.2 9.2E-05 37.6 5.7 31 41-71 80-112 (283)
98 CHL00175 minD septum-site dete 79.7 2.9 6.4E-05 39.0 4.8 32 42-73 14-48 (281)
99 PF07015 VirC1: VirC1 protein; 79.7 2.9 6.3E-05 37.8 4.5 30 44-73 2-34 (231)
100 PRK00784 cobyric acid synthase 79.7 2.1 4.5E-05 43.6 4.1 30 43-72 2-34 (488)
101 CHL00072 chlL photochlorophyll 79.6 2.1 4.6E-05 40.3 3.8 28 46-73 3-32 (290)
102 PRK14974 cell division protein 79.3 3.2 6.9E-05 40.0 4.9 32 42-73 139-172 (336)
103 cd02037 MRP-like MRP (Multiple 79.3 2.2 4.7E-05 36.5 3.5 24 50-73 9-32 (169)
104 PRK05439 pantothenate kinase; 79.3 3.7 7.9E-05 39.1 5.2 28 41-68 84-113 (311)
105 cd02033 BchX Chlorophyllide re 79.1 3.2 6.9E-05 39.9 4.9 34 41-74 29-64 (329)
106 COG1192 Soj ATPases involved i 79.1 2.6 5.7E-05 38.8 4.2 28 46-73 8-36 (259)
107 TIGR01969 minD_arch cell divis 79.0 2.9 6.2E-05 38.1 4.4 29 45-73 2-33 (251)
108 PRK06696 uridine kinase; Valid 78.5 3.7 7.9E-05 37.0 4.9 33 41-73 20-54 (223)
109 PRK13236 nitrogenase reductase 78.0 3.5 7.5E-05 39.0 4.7 33 41-73 4-38 (296)
110 cd02028 UMPK_like Uridine mono 77.8 3.2 6.9E-05 36.1 4.1 28 45-72 1-30 (179)
111 PRK10818 cell division inhibit 77.7 3.3 7.2E-05 38.3 4.5 29 44-72 3-34 (270)
112 cd03109 DTBS Dethiobiotin synt 77.6 4.9 0.00011 33.0 5.0 45 47-109 4-49 (134)
113 PRK10416 signal recognition pa 77.3 4 8.6E-05 39.1 4.9 32 42-73 113-146 (318)
114 TIGR00176 mobB molybdopterin-g 77.0 3.3 7.2E-05 35.1 3.9 31 45-75 1-33 (155)
115 PRK10751 molybdopterin-guanine 77.0 4.3 9.3E-05 35.1 4.6 35 42-76 5-41 (173)
116 PF01656 CbiA: CobQ/CobB/MinD/ 76.7 2.5 5.5E-05 36.7 3.2 28 46-73 4-31 (195)
117 PRK09270 nucleoside triphospha 76.7 3.3 7.1E-05 37.5 4.0 42 27-69 18-61 (229)
118 TIGR03815 CpaE_hom_Actino heli 76.6 7.7 0.00017 37.1 6.8 61 12-72 51-125 (322)
119 PF03308 ArgK: ArgK protein; 76.4 6 0.00013 36.4 5.5 113 41-166 27-179 (266)
120 TIGR00064 ftsY signal recognit 76.4 4.3 9.4E-05 37.9 4.8 31 42-72 71-103 (272)
121 COG3640 CooC CO dehydrogenase 76.3 3.3 7.2E-05 37.4 3.7 28 45-72 2-32 (255)
122 TIGR01281 DPOR_bchL light-inde 76.3 2.3 5E-05 39.4 3.0 25 49-73 8-32 (268)
123 TIGR00455 apsK adenylylsulfate 76.2 6.3 0.00014 34.1 5.6 42 29-71 5-48 (184)
124 PRK07667 uridine kinase; Provi 76.2 3.7 8E-05 36.1 4.1 31 42-72 16-48 (193)
125 KOG3022 Predicted ATPase, nucl 76.1 3.9 8.5E-05 37.8 4.2 31 43-73 47-80 (300)
126 PF13500 AAA_26: AAA domain; P 75.4 4.2 9.1E-05 35.8 4.3 30 44-73 1-33 (199)
127 cd02025 PanK Pantothenate kina 75.0 3.7 8E-05 37.0 3.8 23 45-67 1-25 (220)
128 PRK12374 putative dithiobiotin 74.9 4.4 9.6E-05 36.7 4.4 29 45-73 4-35 (231)
129 COG0572 Udk Uridine kinase [Nu 74.5 3 6.5E-05 37.3 3.1 26 43-68 8-35 (218)
130 PF13207 AAA_17: AAA domain; P 73.2 3.9 8.4E-05 32.5 3.2 25 45-72 1-27 (121)
131 PF09140 MipZ: ATPase MipZ; I 73.1 5.2 0.00011 36.6 4.2 30 45-74 2-34 (261)
132 cd02036 MinD Bacterial cell di 73.0 4.3 9.3E-05 34.7 3.7 27 47-73 6-32 (179)
133 COG0489 Mrp ATPases involved i 72.9 6 0.00013 36.8 4.8 32 42-73 56-90 (265)
134 PRK03846 adenylylsulfate kinas 72.7 8.2 0.00018 34.0 5.5 43 29-72 11-55 (198)
135 cd02042 ParA ParA and ParB of 72.6 4.6 9.9E-05 31.2 3.4 46 45-108 4-49 (104)
136 PF01583 APS_kinase: Adenylyls 72.5 7.1 0.00015 33.1 4.7 30 43-72 2-33 (156)
137 COG0237 CoaE Dephospho-CoA kin 72.0 3.8 8.3E-05 36.3 3.1 28 43-74 2-31 (201)
138 COG3954 PrkB Phosphoribulokina 71.5 2.6 5.7E-05 36.7 1.9 31 41-71 3-35 (289)
139 PRK01077 cobyrinic acid a,c-di 71.0 5 0.00011 40.5 4.1 30 43-72 3-35 (451)
140 COG1618 Predicted nucleotide k 70.2 6.2 0.00013 33.6 3.7 30 43-72 5-36 (179)
141 TIGR00682 lpxK tetraacyldisacc 70.1 7 0.00015 37.3 4.6 32 42-73 27-62 (311)
142 PRK00090 bioD dithiobiotin syn 68.6 6.8 0.00015 35.1 4.1 28 46-73 2-32 (222)
143 PF13614 AAA_31: AAA domain; P 68.1 8.5 0.00018 32.1 4.4 29 44-72 1-32 (157)
144 COG0541 Ffh Signal recognition 67.8 13 0.00029 36.7 6.0 44 43-86 100-146 (451)
145 PRK14489 putative bifunctional 67.8 7.9 0.00017 37.9 4.6 36 42-77 204-241 (366)
146 PTZ00451 dephospho-CoA kinase; 66.2 5.9 0.00013 36.3 3.2 26 44-72 2-29 (244)
147 PF01121 CoaE: Dephospho-CoA k 65.9 5.7 0.00012 34.6 2.9 25 45-73 2-28 (180)
148 PF02374 ArsA_ATPase: Anion-tr 65.7 9.9 0.00021 36.1 4.7 31 44-74 2-34 (305)
149 TIGR01425 SRP54_euk signal rec 65.6 11 0.00023 37.6 5.1 32 43-74 100-133 (429)
150 COG1855 ATPase (PilT family) [ 65.4 5.7 0.00012 39.4 3.0 77 42-129 262-340 (604)
151 cd02034 CooC The accessory pro 65.3 7 0.00015 31.3 3.1 24 50-73 8-31 (116)
152 PRK00889 adenylylsulfate kinas 65.3 11 0.00023 32.4 4.5 31 42-72 3-35 (175)
153 COG0529 CysC Adenylylsulfate k 64.7 19 0.00041 31.2 5.6 32 42-73 22-55 (197)
154 TIGR00379 cobB cobyrinic acid 64.6 7.3 0.00016 39.2 3.8 24 49-72 7-31 (449)
155 PRK09841 cryptic autophosphory 64.2 11 0.00024 40.4 5.3 33 41-73 529-564 (726)
156 cd01672 TMPK Thymidine monopho 63.3 12 0.00026 32.4 4.5 30 45-74 2-33 (200)
157 PRK14491 putative bifunctional 63.1 10 0.00023 39.6 4.7 36 42-77 9-46 (597)
158 PRK01906 tetraacyldisaccharide 62.9 12 0.00025 36.2 4.6 32 42-73 55-90 (338)
159 COG1797 CobB Cobyrinic acid a, 62.7 1.7E+02 0.0037 29.2 24.9 88 237-344 212-309 (451)
160 PRK08233 hypothetical protein; 62.6 7.5 0.00016 33.3 3.1 24 43-66 3-28 (182)
161 PRK12723 flagellar biosynthesi 62.1 6.8 0.00015 38.5 3.0 25 44-68 175-201 (388)
162 TIGR00313 cobQ cobyric acid sy 62.1 7.5 0.00016 39.5 3.3 26 47-72 2-30 (475)
163 PRK05480 uridine/cytidine kina 62.0 9.6 0.00021 33.8 3.7 25 41-65 4-30 (209)
164 PF02606 LpxK: Tetraacyldisacc 60.7 13 0.00028 35.8 4.5 32 42-73 34-69 (326)
165 cd02024 NRK1 Nicotinamide ribo 60.6 6.7 0.00014 34.4 2.3 21 45-65 1-23 (187)
166 TIGR00041 DTMP_kinase thymidyl 60.5 13 0.00029 32.3 4.3 30 43-72 3-34 (195)
167 KOG3354 Gluconate kinase [Carb 60.5 7 0.00015 33.0 2.3 23 45-68 17-39 (191)
168 PTZ00301 uridine kinase; Provi 60.4 10 0.00022 33.9 3.6 26 42-67 2-29 (210)
169 PF00448 SRP54: SRP54-type pro 60.3 15 0.00031 32.5 4.5 27 46-73 7-33 (196)
170 PLN02796 D-glycerate 3-kinase 60.1 14 0.00031 35.6 4.6 31 42-72 99-131 (347)
171 TIGR00235 udk uridine kinase. 60.0 10 0.00022 33.6 3.5 27 41-67 4-32 (207)
172 PF07755 DUF1611: Protein of u 59.5 15 0.00032 34.7 4.6 146 5-151 65-252 (301)
173 COG1663 LpxK Tetraacyldisaccha 59.4 13 0.00028 35.5 4.2 32 42-73 46-81 (336)
174 TIGR00750 lao LAO/AO transport 59.0 16 0.00035 34.5 4.9 34 41-74 32-67 (300)
175 PF13521 AAA_28: AAA domain; P 59.0 8 0.00017 32.7 2.5 19 46-64 2-22 (163)
176 PRK07429 phosphoribulokinase; 57.8 11 0.00025 36.1 3.6 28 41-68 6-35 (327)
177 PRK13768 GTPase; Provisional 57.4 16 0.00035 33.6 4.4 28 45-72 4-33 (253)
178 cd02023 UMPK Uridine monophosp 56.9 9.4 0.0002 33.5 2.7 21 45-65 1-23 (198)
179 KOG3308 Uncharacterized protei 56.6 9.8 0.00021 33.6 2.6 26 43-68 4-31 (225)
180 cd02026 PRK Phosphoribulokinas 56.4 8.7 0.00019 35.9 2.5 25 45-69 1-27 (273)
181 cd03111 CpaE_like This protein 56.4 14 0.00031 28.8 3.4 25 49-73 8-33 (106)
182 PRK11519 tyrosine kinase; Prov 55.9 19 0.00042 38.6 5.3 33 41-73 524-559 (719)
183 COG3172 NadR Predicted ATPase/ 55.4 11 0.00023 32.2 2.6 25 43-67 8-34 (187)
184 COG3265 GntK Gluconate kinase 55.4 6.2 0.00014 33.1 1.2 22 47-69 2-23 (161)
185 cd02019 NK Nucleoside/nucleoti 55.2 17 0.00037 25.8 3.4 21 45-65 1-23 (69)
186 PF03029 ATP_bind_1: Conserved 55.1 10 0.00022 34.7 2.6 21 52-72 7-27 (238)
187 PLN03046 D-glycerate 3-kinase; 54.1 23 0.0005 35.3 5.0 31 42-72 211-243 (460)
188 PRK14734 coaE dephospho-CoA ki 53.8 13 0.00028 32.8 3.1 25 44-72 2-28 (200)
189 PRK00698 tmk thymidylate kinas 53.8 22 0.00049 31.0 4.7 30 43-72 3-34 (205)
190 PRK04040 adenylate kinase; Pro 53.0 18 0.00038 31.7 3.8 29 43-72 2-32 (188)
191 PLN00124 succinyl-CoA ligase [ 52.9 71 0.0015 31.9 8.3 94 267-367 317-420 (422)
192 cd02022 DPCK Dephospho-coenzym 52.6 16 0.00035 31.5 3.5 28 45-76 1-30 (179)
193 PF06418 CTP_synth_N: CTP synt 52.5 17 0.00038 33.4 3.6 30 44-73 2-35 (276)
194 PF01558 POR: Pyruvate ferredo 52.4 1.5E+02 0.0032 25.2 11.6 144 52-252 3-153 (173)
195 COG1428 Deoxynucleoside kinase 52.0 14 0.0003 32.9 2.9 24 43-66 4-29 (216)
196 PF13238 AAA_18: AAA domain; P 51.5 15 0.00034 29.0 3.0 20 46-65 1-22 (129)
197 TIGR01360 aden_kin_iso1 adenyl 51.3 18 0.0004 31.0 3.6 32 42-76 2-35 (188)
198 TIGR01005 eps_transp_fam exopo 51.3 20 0.00043 38.8 4.6 32 42-73 545-579 (754)
199 PRK11889 flhF flagellar biosyn 51.3 25 0.00053 34.8 4.7 31 43-73 241-273 (436)
200 TIGR00347 bioD dethiobiotin sy 51.2 18 0.00038 30.6 3.4 25 50-74 7-31 (166)
201 PRK06547 hypothetical protein; 51.1 25 0.00054 30.3 4.3 25 41-65 13-39 (172)
202 PRK07933 thymidylate kinase; V 51.1 24 0.00053 31.5 4.4 29 45-73 2-32 (213)
203 TIGR03499 FlhF flagellar biosy 51.0 24 0.00052 33.0 4.6 30 43-72 194-227 (282)
204 PLN02422 dephospho-CoA kinase 51.0 15 0.00033 33.3 3.1 27 44-74 2-30 (232)
205 TIGR02880 cbbX_cfxQ probable R 50.7 14 0.0003 34.8 2.9 25 45-70 63-87 (284)
206 KOG0635 Adenosine 5'-phosphosu 50.5 32 0.00069 29.0 4.5 33 41-73 29-63 (207)
207 PLN02924 thymidylate kinase 50.5 25 0.00054 31.7 4.4 32 41-72 14-47 (220)
208 TIGR00959 ffh signal recogniti 50.4 14 0.00031 36.8 3.1 31 43-73 99-132 (428)
209 cd00477 FTHFS Formyltetrahydro 50.3 23 0.00049 35.9 4.3 31 42-72 37-73 (524)
210 COG4088 Predicted nucleotide k 50.2 19 0.00042 32.1 3.4 30 43-72 1-32 (261)
211 PRK00771 signal recognition pa 49.9 26 0.00057 35.1 4.8 31 43-73 95-127 (437)
212 TIGR00152 dephospho-CoA kinase 49.9 13 0.00028 32.3 2.5 21 45-65 1-23 (188)
213 PF08433 KTI12: Chromatin asso 49.8 23 0.00049 33.0 4.1 30 43-72 1-32 (270)
214 COG0125 Tmk Thymidylate kinase 49.2 21 0.00045 31.9 3.6 31 43-73 3-35 (208)
215 KOG2749 mRNA cleavage and poly 49.2 29 0.00062 33.5 4.6 30 43-72 103-134 (415)
216 KOG1324 Dihydrofolate reductas 49.2 18 0.00039 31.2 3.0 14 250-263 61-74 (190)
217 PRK10867 signal recognition pa 49.0 28 0.00061 34.8 4.8 31 43-73 100-133 (433)
218 PRK14732 coaE dephospho-CoA ki 48.6 14 0.0003 32.6 2.4 19 45-63 1-21 (196)
219 PLN02348 phosphoribulokinase 48.5 23 0.0005 34.8 4.0 28 42-69 48-77 (395)
220 PF05872 DUF853: Bacterial pro 47.7 15 0.00032 36.7 2.6 33 41-74 20-52 (502)
221 cd01130 VirB11-like_ATPase Typ 47.6 22 0.00047 30.9 3.5 34 33-67 16-51 (186)
222 PF01935 DUF87: Domain of unkn 47.6 20 0.00042 32.2 3.3 30 42-72 25-55 (229)
223 PRK13506 formate--tetrahydrofo 47.5 33 0.00071 35.2 5.0 31 42-72 53-89 (578)
224 PF00142 Fer4_NifH: 4Fe-4S iro 47.0 22 0.00047 33.0 3.4 31 46-76 3-35 (273)
225 COG0455 flhG Antiactivator of 46.8 36 0.00079 31.5 5.0 30 43-72 2-35 (262)
226 PRK13886 conjugal transfer pro 46.6 19 0.00042 32.9 3.1 24 49-72 11-34 (241)
227 PRK14731 coaE dephospho-CoA ki 46.6 21 0.00046 31.7 3.3 26 43-72 5-32 (208)
228 PRK13896 cobyrinic acid a,c-di 46.6 24 0.00053 35.3 4.0 28 45-72 3-33 (433)
229 PRK00081 coaE dephospho-CoA ki 46.2 20 0.00044 31.4 3.1 26 43-72 2-29 (194)
230 PF01268 FTHFS: Formate--tetra 46.2 26 0.00055 35.9 4.1 32 41-72 52-89 (557)
231 cd03243 ABC_MutS_homologs The 46.0 27 0.00058 30.7 3.9 28 43-70 29-60 (202)
232 PRK14730 coaE dephospho-CoA ki 45.9 23 0.00049 31.2 3.4 27 44-73 2-30 (195)
233 PLN02974 adenosylmethionine-8- 45.6 28 0.0006 37.9 4.5 32 41-72 25-59 (817)
234 PRK14733 coaE dephospho-CoA ki 45.5 20 0.00044 31.8 3.0 27 43-72 6-34 (204)
235 PRK12726 flagellar biosynthesi 45.5 35 0.00077 33.5 4.8 32 42-73 205-238 (407)
236 COG0504 PyrG CTP synthase (UTP 45.3 26 0.00057 35.2 3.9 29 44-72 2-34 (533)
237 PF02223 Thymidylate_kin: Thym 45.0 22 0.00049 30.6 3.2 31 52-82 7-38 (186)
238 PRK06761 hypothetical protein; 44.9 20 0.00042 33.7 2.9 29 44-72 4-34 (282)
239 COG4555 NatA ABC-type Na+ tran 44.5 22 0.00047 31.7 2.8 27 41-67 26-54 (245)
240 COG0003 ArsA Predicted ATPase 44.5 35 0.00076 32.7 4.6 30 44-73 3-34 (322)
241 cd03113 CTGs CTP synthetase (C 43.6 32 0.0007 31.4 3.9 29 45-73 2-34 (255)
242 PRK06995 flhF flagellar biosyn 43.1 37 0.0008 34.5 4.7 24 43-66 256-281 (484)
243 cd02038 FleN-like FleN is a me 43.0 27 0.00058 28.7 3.2 49 46-108 5-54 (139)
244 COG5324 Uncharacterized conser 42.9 26 0.00056 35.1 3.4 29 46-78 380-408 (758)
245 PF08303 tRNA_lig_kinase: tRNA 42.7 14 0.00031 31.5 1.5 23 46-69 5-27 (168)
246 PRK13505 formate--tetrahydrofo 42.3 41 0.0009 34.5 4.9 32 42-73 54-91 (557)
247 COG1102 Cmk Cytidylate kinase 42.2 30 0.00065 29.6 3.3 30 45-77 2-33 (179)
248 cd02027 APSK Adenosine 5'-phos 41.9 33 0.00072 28.6 3.6 27 46-72 2-30 (149)
249 PRK14490 putative bifunctional 41.6 36 0.00077 33.3 4.3 32 42-74 4-37 (369)
250 PRK03333 coaE dephospho-CoA ki 41.3 24 0.00053 34.8 3.1 20 44-63 2-23 (395)
251 TIGR02782 TrbB_P P-type conjug 41.3 54 0.0012 31.0 5.3 51 16-67 106-158 (299)
252 PRK01184 hypothetical protein; 41.3 36 0.00079 29.2 3.9 26 44-73 2-29 (184)
253 PF00580 UvrD-helicase: UvrD/R 41.3 27 0.0006 32.6 3.4 29 41-70 14-43 (315)
254 PRK13695 putative NTPase; Prov 40.7 40 0.00087 28.7 4.1 28 45-72 2-31 (174)
255 cd03281 ABC_MSH5_euk MutS5 hom 40.6 39 0.00084 30.2 4.0 29 44-72 30-62 (213)
256 cd03114 ArgK-like The function 40.6 32 0.00068 28.8 3.3 28 46-73 2-31 (148)
257 PRK13507 formate--tetrahydrofo 40.3 30 0.00065 35.4 3.5 31 42-72 62-98 (587)
258 PRK06762 hypothetical protein; 40.3 32 0.0007 28.9 3.4 22 44-65 3-26 (166)
259 PRK00300 gmk guanylate kinase; 40.0 28 0.00061 30.5 3.0 25 42-66 4-30 (205)
260 cd03283 ABC_MutS-like MutS-lik 38.7 43 0.00093 29.5 4.0 29 43-71 25-57 (199)
261 cd00550 ArsA_ATPase Oxyanion-t 38.6 26 0.00057 32.2 2.7 24 50-73 9-32 (254)
262 PRK06278 cobyrinic acid a,c-di 38.6 35 0.00077 34.6 3.8 27 42-68 237-266 (476)
263 PRK06217 hypothetical protein; 38.4 32 0.00069 29.7 3.1 21 45-65 3-25 (183)
264 cd03115 SRP The signal recogni 37.9 36 0.00078 28.9 3.3 29 45-73 2-32 (173)
265 PRK08338 2-oxoglutarate ferred 37.8 2.6E+02 0.0055 23.8 12.7 143 46-252 3-148 (170)
266 PRK13973 thymidylate kinase; P 37.7 33 0.00072 30.5 3.2 30 44-73 4-35 (213)
267 cd02035 ArsA ArsA ATPase funct 37.7 30 0.00066 30.8 2.9 23 50-72 8-30 (217)
268 PRK05632 phosphate acetyltrans 37.6 42 0.00091 35.8 4.4 29 45-73 4-35 (684)
269 COG1348 NifH Nitrogenase subun 37.3 32 0.00069 31.3 2.8 32 45-76 3-36 (278)
270 PRK05380 pyrG CTP synthetase; 37.2 43 0.00092 34.3 4.1 31 43-73 2-36 (533)
271 PLN02759 Formate--tetrahydrofo 37.1 43 0.00092 34.7 4.0 31 42-72 68-105 (637)
272 cd00886 MogA_MoaB MogA_MoaB fa 36.8 1.3E+02 0.0029 25.0 6.6 45 334-378 22-70 (152)
273 TIGR01033 DNA-binding regulato 36.7 91 0.002 28.5 5.8 56 233-290 54-116 (238)
274 TIGR00150 HI0065_YjeE ATPase, 36.7 61 0.0013 26.6 4.3 31 35-66 15-47 (133)
275 COG5271 MDN1 AAA ATPase contai 36.3 39 0.00084 39.9 3.8 54 29-84 454-524 (4600)
276 PRK08534 pyruvate ferredoxin o 36.0 2.8E+02 0.0061 23.8 12.4 94 45-164 3-98 (181)
277 PF13604 AAA_30: AAA domain; P 35.8 54 0.0012 28.8 4.1 30 44-73 19-50 (196)
278 PF00005 ABC_tran: ABC transpo 35.7 36 0.00078 27.4 2.9 26 42-67 10-37 (137)
279 PRK05541 adenylylsulfate kinas 35.6 61 0.0013 27.6 4.4 31 42-72 6-38 (176)
280 PRK00131 aroK shikimate kinase 35.5 43 0.00093 28.1 3.4 24 42-65 3-28 (175)
281 TIGR02322 phosphon_PhnN phosph 35.3 37 0.00081 29.0 3.0 24 44-67 2-27 (179)
282 PRK14528 adenylate kinase; Pro 35.0 51 0.0011 28.6 3.8 27 44-73 2-30 (186)
283 COG4133 CcmA ABC-type transpor 34.9 39 0.00084 29.7 2.9 28 42-69 27-56 (209)
284 cd01131 PilT Pilus retraction 34.5 55 0.0012 28.7 4.0 22 45-66 3-26 (198)
285 cd03280 ABC_MutS2 MutS2 homolo 34.3 63 0.0014 28.3 4.4 27 44-70 29-59 (200)
286 PRK13947 shikimate kinase; Pro 34.1 45 0.00097 28.2 3.3 22 45-66 3-26 (171)
287 PRK07261 topology modulation p 33.5 44 0.00096 28.6 3.2 20 46-65 3-24 (171)
288 TIGR01420 pilT_fam pilus retra 33.5 55 0.0012 31.6 4.1 32 35-66 114-147 (343)
289 COG1737 RpiR Transcriptional r 33.3 2E+02 0.0044 26.8 7.8 60 314-376 120-184 (281)
290 cd03223 ABCD_peroxisomal_ALDP 33.2 45 0.00098 28.2 3.2 25 42-66 26-52 (166)
291 PRK05703 flhF flagellar biosyn 33.1 65 0.0014 32.2 4.6 30 43-72 221-254 (424)
292 KOG0780 Signal recognition par 33.1 30 0.00065 33.8 2.1 31 43-73 101-133 (483)
293 PF02562 PhoH: PhoH-like prote 32.9 42 0.00092 29.8 3.0 38 267-304 120-157 (205)
294 PF13555 AAA_29: P-loop contai 32.2 69 0.0015 22.5 3.3 26 44-69 24-51 (62)
295 KOG1532 GTPase XAB1, interacts 32.2 48 0.001 30.9 3.2 26 45-71 24-49 (366)
296 KOG0447 Dynamin-like GTP bindi 32.1 22 0.00048 36.2 1.1 24 41-64 306-331 (980)
297 PF13476 AAA_23: AAA domain; P 31.9 52 0.0011 28.2 3.4 27 42-68 18-46 (202)
298 TIGR00337 PyrG CTP synthase. C 31.7 57 0.0012 33.4 4.0 29 44-72 2-34 (525)
299 smart00534 MUTSac ATPase domai 31.7 55 0.0012 28.3 3.5 28 45-72 1-32 (185)
300 PF12846 AAA_10: AAA-like doma 31.4 47 0.001 30.7 3.3 28 44-72 5-32 (304)
301 TIGR00177 molyb_syn molybdenum 31.3 1.4E+02 0.003 24.7 5.7 49 331-379 26-76 (144)
302 COG2759 MIS1 Formyltetrahydrof 31.3 42 0.00091 33.4 2.8 31 42-72 51-87 (554)
303 COG2087 CobU Adenosyl cobinami 31.1 1.7E+02 0.0038 25.1 6.1 78 295-376 2-82 (175)
304 PLN02318 phosphoribulokinase/u 31.0 52 0.0011 34.4 3.6 25 42-66 64-90 (656)
305 cd02020 CMPK Cytidine monophos 30.9 45 0.00098 27.1 2.7 21 45-65 1-23 (147)
306 PLN02327 CTP synthase 30.7 60 0.0013 33.4 3.9 30 44-73 2-35 (557)
307 PRK08099 bifunctional DNA-bind 30.6 49 0.0011 32.8 3.3 24 42-65 218-243 (399)
308 PRK13477 bifunctional pantoate 30.2 62 0.0013 33.2 4.0 24 42-65 283-308 (512)
309 PRK08154 anaerobic benzoate ca 30.2 72 0.0015 30.3 4.2 25 41-65 131-157 (309)
310 cd01129 PulE-GspE PulE/GspE Th 30.1 85 0.0018 29.1 4.6 20 42-61 79-100 (264)
311 TIGR01313 therm_gnt_kin carboh 30.1 37 0.00081 28.4 2.1 19 47-65 2-22 (163)
312 PRK04296 thymidine kinase; Pro 29.9 78 0.0017 27.6 4.2 30 44-73 3-34 (190)
313 COG3910 Predicted ATPase [Gene 29.7 47 0.001 29.3 2.6 50 13-65 10-61 (233)
314 PRK06851 hypothetical protein; 29.7 1.1E+02 0.0024 30.0 5.4 31 42-72 29-61 (367)
315 cd03229 ABC_Class3 This class 29.5 57 0.0012 27.9 3.2 25 42-66 25-51 (178)
316 PF07931 CPT: Chloramphenicol 29.1 34 0.00073 29.6 1.6 24 44-67 2-27 (174)
317 PRK10536 hypothetical protein; 29.1 2.1E+02 0.0045 26.5 6.8 56 267-322 177-233 (262)
318 PTZ00386 formyl tetrahydrofola 29.0 54 0.0012 33.9 3.3 31 42-72 67-104 (625)
319 PRK13975 thymidylate kinase; P 29.0 56 0.0012 28.3 3.1 24 44-67 3-28 (196)
320 cd05013 SIS_RpiR RpiR-like pro 28.8 2.7E+02 0.0058 21.9 7.1 9 293-301 13-21 (139)
321 COG0362 Gnd 6-phosphogluconate 28.8 2.7E+02 0.0058 27.6 7.7 26 356-382 81-106 (473)
322 COG1245 Predicted ATPase, RNas 28.6 54 0.0012 33.0 3.1 27 40-66 97-125 (591)
323 cd03255 ABC_MJ0796_Lo1CDE_FtsE 28.3 58 0.0013 28.8 3.1 25 42-66 29-55 (218)
324 TIGR01613 primase_Cterm phage/ 28.3 39 0.00086 31.9 2.1 21 49-69 84-104 (304)
325 PF10309 DUF2414: Protein of u 27.8 2.2E+02 0.0047 20.0 5.7 45 239-289 15-61 (62)
326 cd03226 ABC_cobalt_CbiO_domain 27.8 59 0.0013 28.5 3.1 25 42-66 25-51 (205)
327 COG1066 Sms Predicted ATP-depe 27.7 1.5E+02 0.0032 29.5 5.8 114 42-158 92-211 (456)
328 cd00758 MoCF_BD MoCF_BD: molyb 27.6 1.6E+02 0.0035 23.8 5.4 47 333-379 20-68 (133)
329 PRK08118 topology modulation p 27.6 69 0.0015 27.2 3.3 23 44-66 2-26 (167)
330 PRK12378 hypothetical protein; 27.5 2.2E+02 0.0048 25.9 6.7 56 233-290 52-113 (235)
331 COG1131 CcmA ABC-type multidru 27.4 49 0.0011 31.2 2.6 26 42-67 30-57 (293)
332 PF14207 DpnD-PcfM: DpnD/PcfM- 27.4 67 0.0015 21.3 2.4 23 352-374 17-39 (48)
333 smart00852 MoCF_biosynth Proba 27.2 1.6E+02 0.0035 23.8 5.4 48 333-380 19-68 (135)
334 cd03259 ABC_Carb_Solutes_like 27.2 63 0.0014 28.5 3.2 25 42-66 25-51 (213)
335 PF01709 Transcrip_reg: Transc 27.1 1.1E+02 0.0023 28.0 4.6 56 233-290 50-112 (234)
336 PRK00110 hypothetical protein; 27.0 1.7E+02 0.0036 26.9 5.9 55 233-289 54-115 (245)
337 PRK05537 bifunctional sulfate 27.0 1.4E+02 0.0029 31.3 5.9 55 16-70 356-422 (568)
338 PF12147 Methyltransf_20: Puta 26.9 1.5E+02 0.0033 28.0 5.5 69 100-172 188-260 (311)
339 PRK13537 nodulation ABC transp 26.9 48 0.001 31.4 2.4 25 42-66 32-58 (306)
340 KOG3062 RNA polymerase II elon 26.9 81 0.0018 28.6 3.6 29 43-71 1-31 (281)
341 PRK13833 conjugal transfer pro 26.8 1E+02 0.0022 29.6 4.6 33 32-65 134-168 (323)
342 PRK13889 conjugal transfer rel 26.7 60 0.0013 36.1 3.4 29 45-73 364-394 (988)
343 cd00885 cinA Competence-damage 26.6 1.5E+02 0.0032 25.4 5.2 48 333-380 20-69 (170)
344 KOG1534 Putative transcription 26.5 57 0.0012 29.3 2.5 28 44-72 7-34 (273)
345 PRK11439 pphA serine/threonine 26.4 2.8E+02 0.0062 24.6 7.3 70 267-342 17-89 (218)
346 TIGR00017 cmk cytidylate kinas 26.3 72 0.0016 28.6 3.3 23 44-66 3-27 (217)
347 PRK11557 putative DNA-binding 26.3 3.1E+02 0.0068 25.2 7.8 17 315-331 119-135 (278)
348 PRK10744 pstB phosphate transp 26.2 55 0.0012 30.0 2.6 25 42-66 38-64 (260)
349 PRK09825 idnK D-gluconate kina 26.0 75 0.0016 27.3 3.3 23 44-66 4-28 (176)
350 PF09145 Ubiq-assoc: Ubiquitin 26.0 11 0.00024 24.3 -1.4 27 380-406 18-44 (46)
351 PF00994 MoCF_biosynth: Probab 25.9 83 0.0018 25.9 3.5 47 334-380 19-67 (144)
352 PRK00023 cmk cytidylate kinase 25.8 73 0.0016 28.7 3.3 24 43-66 4-29 (225)
353 PF00004 AAA: ATPase family as 25.8 64 0.0014 25.4 2.7 21 46-66 1-23 (132)
354 PRK13826 Dtr system oriT relax 25.8 63 0.0014 36.4 3.4 31 43-73 397-429 (1102)
355 PRK15177 Vi polysaccharide exp 25.8 47 0.001 29.5 2.0 25 42-66 12-38 (213)
356 PRK14723 flhF flagellar biosyn 25.7 95 0.0021 33.5 4.5 31 43-73 185-219 (767)
357 cd03222 ABC_RNaseL_inhibitor T 25.7 48 0.001 28.6 2.0 27 41-67 23-51 (177)
358 PRK13540 cytochrome c biogenes 25.7 72 0.0016 27.9 3.2 24 42-65 26-51 (200)
359 COG5623 CLP1 Predicted GTPase 25.5 78 0.0017 30.0 3.4 31 42-72 98-130 (424)
360 cd03110 Fer4_NifH_child This p 25.5 70 0.0015 27.2 3.1 16 50-65 9-24 (179)
361 PF03266 NTPase_1: NTPase; In 25.4 98 0.0021 26.5 3.9 27 46-72 2-30 (168)
362 cd04236 AAK_NAGS-Urea AAK_NAGS 25.3 1.3E+02 0.0029 27.9 5.0 65 233-302 7-77 (271)
363 cd03294 ABC_Pro_Gly_Bertaine T 25.2 70 0.0015 29.6 3.2 25 42-66 49-75 (269)
364 PRK14722 flhF flagellar biosyn 25.2 82 0.0018 30.9 3.7 24 43-66 137-162 (374)
365 cd03232 ABC_PDR_domain2 The pl 25.2 69 0.0015 27.8 3.0 23 42-64 32-56 (192)
366 cd00227 CPT Chloramphenicol (C 25.1 86 0.0019 26.7 3.5 23 44-66 3-27 (175)
367 PRK09968 serine/threonine-spec 25.1 3.2E+02 0.007 24.3 7.3 69 267-341 15-86 (218)
368 KOG3220 Similar to bacterial d 25.0 71 0.0015 28.4 2.9 25 44-72 2-28 (225)
369 TIGR01166 cbiO cobalt transpor 24.7 75 0.0016 27.4 3.1 25 42-66 17-43 (190)
370 cd03273 ABC_SMC2_euk Eukaryoti 24.6 83 0.0018 28.7 3.5 26 42-67 24-51 (251)
371 COG0283 Cmk Cytidylate kinase 24.6 75 0.0016 28.5 3.0 29 44-72 5-35 (222)
372 PRK04182 cytidylate kinase; Pr 24.6 71 0.0015 27.0 2.9 21 45-65 2-24 (180)
373 PRK12724 flagellar biosynthesi 24.5 1.2E+02 0.0026 30.3 4.7 30 43-72 223-255 (432)
374 cd03278 ABC_SMC_barmotin Barmo 24.4 74 0.0016 27.9 3.0 23 45-67 24-48 (197)
375 PRK01215 competence damage-ind 24.3 1.6E+02 0.0035 27.3 5.3 48 333-380 24-73 (264)
376 PRK14530 adenylate kinase; Pro 24.2 81 0.0017 28.0 3.3 27 44-73 4-32 (215)
377 PRK10463 hydrogenase nickel in 24.2 2E+02 0.0043 27.1 5.9 28 41-68 102-131 (290)
378 COG4586 ABC-type uncharacteriz 24.1 65 0.0014 30.1 2.6 31 42-72 49-81 (325)
379 cd03274 ABC_SMC4_euk Eukaryoti 24.0 82 0.0018 28.0 3.3 22 43-64 25-48 (212)
380 PRK09880 L-idonate 5-dehydroge 24.0 5.2E+02 0.011 24.5 9.1 33 269-302 236-268 (343)
381 PRK10247 putative ABC transpor 23.9 64 0.0014 28.8 2.6 25 42-66 32-58 (225)
382 TIGR02524 dot_icm_DotB Dot/Icm 23.9 85 0.0018 30.6 3.6 25 42-66 133-159 (358)
383 smart00053 DYNc Dynamin, GTPas 23.9 73 0.0016 29.1 2.9 23 42-64 25-49 (240)
384 PRK10908 cell division protein 23.8 80 0.0017 28.1 3.2 26 41-66 26-53 (222)
385 PRK09518 bifunctional cytidyla 23.8 74 0.0016 34.2 3.4 23 44-66 2-26 (712)
386 PRK12338 hypothetical protein; 23.8 79 0.0017 30.3 3.2 24 42-65 3-28 (319)
387 TIGR02173 cyt_kin_arch cytidyl 23.7 77 0.0017 26.5 2.9 21 45-65 2-24 (171)
388 cd01120 RecA-like_NTPases RecA 23.6 1.1E+02 0.0023 25.0 3.8 27 46-72 2-30 (165)
389 PF00106 adh_short: short chai 23.6 4.1E+02 0.0088 21.7 7.8 96 294-399 1-108 (167)
390 TIGR02533 type_II_gspE general 23.4 94 0.002 31.7 3.9 26 35-60 234-261 (486)
391 PRK13946 shikimate kinase; Pro 23.4 85 0.0018 27.1 3.2 22 44-65 11-34 (184)
392 TIGR00101 ureG urease accessor 23.3 1.2E+02 0.0026 26.6 4.2 24 44-67 2-27 (199)
393 TIGR02640 gas_vesic_GvpN gas v 23.2 62 0.0013 29.9 2.4 23 42-65 23-45 (262)
394 PRK09493 glnQ glutamine ABC tr 23.2 81 0.0018 28.4 3.1 25 42-66 26-52 (240)
395 cd03263 ABC_subfamily_A The AB 23.1 83 0.0018 27.8 3.1 25 42-66 27-53 (220)
396 COG2019 AdkA Archaeal adenylat 23.1 97 0.0021 26.7 3.2 23 43-65 4-28 (189)
397 PRK14709 hypothetical protein; 23.0 60 0.0013 32.9 2.4 20 49-68 213-232 (469)
398 cd02021 GntK Gluconate kinase 22.9 66 0.0014 26.4 2.3 20 46-65 2-23 (150)
399 cd03272 ABC_SMC3_euk Eukaryoti 22.8 80 0.0017 28.4 3.0 24 43-66 23-48 (243)
400 cd03240 ABC_Rad50 The catalyti 22.7 89 0.0019 27.5 3.2 24 43-66 22-47 (204)
401 PRK08356 hypothetical protein; 22.7 1.3E+02 0.0028 26.2 4.2 30 43-76 5-36 (195)
402 PF12128 DUF3584: Protein of u 22.7 93 0.002 35.7 4.0 20 46-65 20-41 (1201)
403 PRK14235 phosphate transporter 22.7 79 0.0017 29.2 3.0 25 42-66 44-70 (267)
404 cd03260 ABC_PstB_phosphate_tra 22.7 88 0.0019 27.9 3.2 24 42-65 25-50 (227)
405 TIGR02770 nickel_nikD nickel i 22.6 57 0.0012 29.3 2.0 25 42-66 11-37 (230)
406 PRK10834 vancomycin high tempe 22.5 6E+02 0.013 23.2 8.7 16 383-398 178-193 (239)
407 cd03265 ABC_DrrA DrrA is the A 22.5 88 0.0019 27.7 3.2 25 42-66 25-51 (220)
408 PRK11248 tauB taurine transpor 22.4 86 0.0019 28.7 3.2 25 42-66 26-52 (255)
409 PRK13652 cbiO cobalt transport 22.3 84 0.0018 29.2 3.1 25 42-66 29-55 (277)
410 PRK14721 flhF flagellar biosyn 22.2 1E+02 0.0022 30.8 3.7 24 42-65 190-215 (420)
411 TIGR02667 moaB_proteo molybden 22.2 1.9E+02 0.0041 24.6 5.0 46 333-378 23-72 (163)
412 PRK06731 flhF flagellar biosyn 22.1 1.5E+02 0.0032 27.6 4.7 32 42-73 74-107 (270)
413 PRK13625 bis(5'-nucleosyl)-tet 22.1 4.2E+02 0.0092 24.0 7.7 72 269-342 3-85 (245)
414 PRK02496 adk adenylate kinase; 22.1 1E+02 0.0022 26.4 3.4 21 45-65 3-25 (184)
415 cd03221 ABCF_EF-3 ABCF_EF-3 E 22.0 91 0.002 25.7 2.9 25 42-66 25-51 (144)
416 TIGR03263 guanyl_kin guanylate 21.9 84 0.0018 26.7 2.8 22 44-65 2-25 (180)
417 cd01453 vWA_transcription_fact 21.8 4.9E+02 0.011 22.4 7.6 21 349-369 161-181 (183)
418 cd03269 ABC_putative_ATPase Th 21.8 92 0.002 27.3 3.2 24 42-65 25-50 (210)
419 TIGR03608 L_ocin_972_ABC putat 21.7 90 0.0019 27.2 3.1 25 42-66 23-49 (206)
420 cd03282 ABC_MSH4_euk MutS4 hom 21.7 1.1E+02 0.0025 27.0 3.7 30 42-71 28-61 (204)
421 cd03256 ABC_PhnC_transporter A 21.7 81 0.0017 28.4 2.8 25 42-66 26-52 (241)
422 cd03237 ABC_RNaseL_inhibitor_d 21.6 92 0.002 28.4 3.2 25 42-66 24-50 (246)
423 cd03247 ABCC_cytochrome_bd The 21.4 98 0.0021 26.4 3.2 25 42-66 27-53 (178)
424 TIGR03864 PQQ_ABC_ATP ABC tran 21.4 94 0.002 27.9 3.2 25 42-66 26-52 (236)
425 PF02492 cobW: CobW/HypB/UreG, 21.4 1.4E+02 0.0031 25.5 4.2 29 44-73 1-31 (178)
426 PRK15482 transcriptional regul 21.4 3.6E+02 0.0078 25.0 7.2 10 366-375 179-188 (285)
427 PHA02575 1 deoxynucleoside mon 21.4 90 0.002 28.2 2.9 24 45-72 2-27 (227)
428 PRK03731 aroL shikimate kinase 21.3 1E+02 0.0022 26.0 3.2 21 45-65 4-26 (171)
429 PRK04220 2-phosphoglycerate ki 21.3 1.2E+02 0.0025 28.9 3.7 23 43-65 92-116 (301)
430 PRK11337 DNA-binding transcrip 21.3 2.5E+02 0.0054 26.1 6.1 18 314-331 130-147 (292)
431 cd03250 ABCC_MRP_domain1 Domai 21.1 99 0.0021 27.0 3.2 26 41-66 29-56 (204)
432 cd03216 ABC_Carb_Monos_I This 21.1 99 0.0022 26.0 3.1 25 42-66 25-51 (163)
433 cd03293 ABC_NrtD_SsuB_transpor 21.0 91 0.002 27.6 3.0 25 42-66 29-55 (220)
434 cd04824 eu_ALAD_PBGS_cysteine_ 21.0 53 0.0012 31.1 1.4 40 353-392 221-261 (320)
435 TIGR03334 IOR_beta indolepyruv 20.9 5.5E+02 0.012 22.2 13.5 89 46-164 3-94 (189)
436 cd03225 ABC_cobalt_CbiO_domain 20.7 1E+02 0.0022 27.1 3.2 25 42-66 26-52 (211)
437 TIGR02768 TraA_Ti Ti-type conj 20.7 94 0.002 33.6 3.4 28 45-73 373-400 (744)
438 COG1856 Uncharacterized homolo 20.6 1.2E+02 0.0026 27.4 3.4 42 357-407 42-88 (275)
439 PRK13949 shikimate kinase; Pro 20.5 1.1E+02 0.0023 26.2 3.1 22 45-66 3-26 (169)
440 PF04693 DDE_Tnp_2: Archaeal p 20.5 87 0.0019 29.5 2.7 44 236-280 51-97 (327)
441 PRK10584 putative ABC transpor 20.5 1E+02 0.0022 27.5 3.2 25 42-66 35-61 (228)
442 cd03213 ABCG_EPDR ABCG transpo 20.5 1E+02 0.0022 26.9 3.0 24 42-65 34-59 (194)
443 PRK13650 cbiO cobalt transport 20.4 84 0.0018 29.2 2.7 25 42-66 32-58 (279)
444 COG4152 ABC-type uncharacteriz 20.4 68 0.0015 29.6 1.9 26 42-67 27-54 (300)
445 PRK13764 ATPase; Provisional 20.4 1.6E+02 0.0035 30.8 4.9 30 43-72 257-288 (602)
446 TIGR02673 FtsE cell division A 20.4 1E+02 0.0022 27.1 3.1 25 42-66 27-53 (214)
447 PLN02200 adenylate kinase fami 20.3 1.4E+02 0.003 27.1 4.0 31 43-76 43-75 (234)
448 PRK00409 recombination and DNA 20.3 1.2E+02 0.0027 32.9 4.2 31 42-72 326-360 (782)
449 PRK14251 phosphate ABC transpo 20.3 83 0.0018 28.6 2.6 25 42-66 29-55 (251)
450 cd03231 ABC_CcmA_heme_exporter 20.2 1E+02 0.0022 26.9 3.1 25 42-66 25-51 (201)
451 cd03292 ABC_FtsE_transporter F 20.2 1E+02 0.0022 27.0 3.1 25 42-66 26-52 (214)
452 COG1149 MinD superfamily P-loo 20.2 1.1E+02 0.0023 28.5 3.2 25 45-69 3-30 (284)
453 cd00384 ALAD_PBGS Porphobilino 20.2 57 0.0012 30.8 1.4 39 353-391 216-255 (314)
454 TIGR00073 hypB hydrogenase acc 20.2 3.1E+02 0.0068 24.0 6.2 24 41-64 20-45 (207)
455 COG1058 CinA Predicted nucleot 20.2 2.5E+02 0.0054 26.0 5.5 52 331-382 20-73 (255)
456 cd03253 ABCC_ATM1_transporter 20.1 82 0.0018 28.2 2.5 25 42-66 26-52 (236)
457 cd03285 ABC_MSH2_euk MutS2 hom 20.1 1.2E+02 0.0026 27.2 3.5 28 42-69 29-60 (222)
458 PRK13976 thymidylate kinase; P 20.0 1E+02 0.0023 27.3 3.1 18 52-69 11-29 (209)
No 1
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=100.00 E-value=1.7e-65 Score=511.29 Aligned_cols=367 Identities=27% Similarity=0.488 Sum_probs=307.1
Q ss_pred eeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccch
Q 015421 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83 (407)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~ 83 (407)
+||+||+++++||++++|++.|+|++++++++++.+ +.++|+||||||||||++||+++|+..|.++..+||+|.|..
T Consensus 65 ~vv~sp~i~~~~p~~~~a~~~~i~i~~~~e~~~~~~--~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gnig~~~~ 142 (433)
T TIGR01087 65 LVVKSPGIPPDHPLVQAAAKRGIPVVGDIELFLRLV--PLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGTPAL 142 (433)
T ss_pred EEEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhc--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECccCHHHH
Confidence 699999999999999999999999999999999887 568999999999999999999999999999999999999854
Q ss_pred hhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeC
Q 015421 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163 (407)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~ 163 (407)
.... ..+.+++|+|+|+++++.+.. ++|+++|||||++||+++|+|+|+|+++|.++++.+++++.+|+|.
T Consensus 143 ~~~~--------~~~~~~~V~E~~~~~l~~~~~-~~p~iaViTNI~~DHld~~gs~e~~~~~K~~i~~~~~~~~~~i~n~ 213 (433)
T TIGR01087 143 EVLD--------QEGAELYVLELSSFQLETTES-LRPEIALILNISEDHLDWHGSFEDYVAAKLKIFARQTEGDVAVLNA 213 (433)
T ss_pred HHHh--------ccCCCEEEEEcChhHhcCCcc-cCCCEEEEecCChhHhcccCCHHHHHHHHHHHHhcCCCCCEEEEEC
Confidence 3221 135688999999988886554 7999999999999999999999999999999999888889999999
Q ss_pred CChhhHHHHhccccceEEeecCCCcccccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCHH
Q 015421 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVE 243 (407)
Q Consensus 164 dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~~ 243 (407)
||+.+..+......++++|+....... .+.....+..+....+.++++|.||++|+++|+ +++..+|++++
T Consensus 214 dd~~~~~~~~~~~~~~~~~g~~~~~~~-------~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAi--a~a~~lgi~~~ 284 (433)
T TIGR01087 214 DDPRFARLAQKSKAQVIWFSVEKDAER-------GLCIRDGGLYLKPNDLEGSLLGLHNAENILAAI--ALAKSLGLNLE 284 (433)
T ss_pred CCHHHHHhhhhcCceEEEEeCCccCCC-------ceEEECCEEEEeccccccCCCcHHHHHHHHHHH--HHHHHcCCCHH
Confidence 999887776655567788875421110 111111111111112468999999999999999 89999999999
Q ss_pred HHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccCCCcEEEEECCCCCCCCCCCCcchHhhhhhccC
Q 015421 244 ALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323 (407)
Q Consensus 244 ~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~ 323 (407)
.|+++|++|++++||||++. ..+++.+|||+++|||+|+.++++.++ +++++|+|++.+.+ .++++.+.+..
T Consensus 285 ~i~~~L~~f~g~~~R~e~v~-~~~g~~~idD~~atn~~a~~~al~~~~-~~ii~I~Gg~~~~~------d~~~~~~~l~~ 356 (433)
T TIGR01087 285 AILEALRSFKGLPHRLEYVG-QKNGVHFYNDSKATNVHATLAALSAFD-NPVILIVGGDDKGA------DFSPLAPAAAG 356 (433)
T ss_pred HHHHHHHhCCCCCCceEEEE-EECCEEEEEcCCCCCHHHHHHHHHhCC-CCEEEEEcCCCCCC------CHHHHHHHHHh
Confidence 99999999999999999986 357899999988999999999999996 47899999775433 24566666643
Q ss_pred -ccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHHHHh
Q 015421 324 -HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAF 400 (407)
Q Consensus 324 -~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~~~~ 400 (407)
.+.++++|+....+.+.++..+. .+..++++++|++.+.+.+++||+||++|+|.||++|++|++||+.|.++|+
T Consensus 357 ~~~~v~~~G~~~~~l~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~gdiVLlspa~as~d~f~~~~~RG~~F~~~v~ 432 (433)
T TIGR01087 357 KVKAVLAIGEDAAKIAPLLKEAGL--SVYLVESLEEAVQAAREVASPGDVVLLSPACASFDQFKSYEERGEKFKELVR 432 (433)
T ss_pred hCCEEEEECCCHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHhcCCCCEEEECccchhhccccCHHHHHHHHHHHHh
Confidence 56888999999888888765432 3456789999999999989999999999999999999999999999999986
No 2
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.2e-65 Score=511.06 Aligned_cols=372 Identities=27% Similarity=0.390 Sum_probs=305.2
Q ss_pred eeeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccc
Q 015421 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82 (407)
Q Consensus 3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~ 82 (407)
-+||+||.++++||++++|++.++|++++++++++.. ++.++|+||||||||||++||+++|+..|.++.++||+|.|.
T Consensus 65 d~vV~SPgI~~~~p~~~~a~~~gi~v~~e~el~~~~~-~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~GniG~p~ 143 (454)
T PRK01368 65 DKIVLSPGIPLTHEIVKIAKNFNIPITSDIDLLFEKS-KNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIGVPA 143 (454)
T ss_pred CEEEECCCCCCCCHHHHHHHHCCCceecHHHHHHHHh-cCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEEccCCHHH
Confidence 4799999999999999999999999999999998876 456899999999999999999999999999999999999986
Q ss_pred hhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEe
Q 015421 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162 (407)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n 162 (407)
... ..+.+++|+|+|+++++.... ++|+++|||||++||+|+|+|+|+|+++|.++++.+++.+.+|+|
T Consensus 144 l~~----------~~~~~~~VlE~ss~ql~~~~~-~~P~iavitNI~~DHLd~~~s~e~y~~aK~~i~~~~~~~~~~Vln 212 (454)
T PRK01368 144 LQA----------KASKDGYVLELSSFQLDLVKT-FTAKIAVLLNITPDHLDRHQDMDGYIAAKSKIFDRMDKDSYAVIN 212 (454)
T ss_pred hcc----------cCCCCEEEEEcCchhhccccc-cCCCEEEEecCChhHhhccCCHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 432 223478999999999876544 899999999999999999999999999999999988888999999
Q ss_pred CCChhhHHHHhcc----ccceEEeecCCCc--ccccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHH
Q 015421 163 FGNQHLNEAIKGH----RFNLAWIGAFPGV--KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGL 236 (407)
Q Consensus 163 ~dd~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~ 236 (407)
.||+.+..+.... ..++++|+..... .+........+...... .. ...+.++++|.||++|+++|+ +++.
T Consensus 213 ~Dd~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~l~G~hn~~Na~aAi--a~~~ 288 (454)
T PRK01368 213 IDNDYCREIFIKLQQEQRIKLIPFSVTKILENGISVVDDKISDNFFDDI-SF-KLPFNKNLQGKHNCENIAASY--AVAK 288 (454)
T ss_pred CCcHHHHHHHHHhhcccCceEEEEeCCcccCCCcEEECCEEEEEecCCc-ce-EEEecCCCCchhhHHHHHHHH--HHHH
Confidence 9999887765322 2356777753211 00000000001110010 01 112357899999999999999 8899
Q ss_pred HcCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccCCCcEEEEECCCCCCCCCCCCcchHh
Q 015421 237 DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEK 316 (407)
Q Consensus 237 ~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~ 316 (407)
.+|++.+.|.++|++|.+++||||++. ..+++.+||||+||||+|+.++++.+. ++++|+|++. ++. .++.
T Consensus 289 ~lgi~~~~i~~~L~~F~~~~~Rle~v~-~~~gv~~i~DS~atN~~a~~~al~~~~--~i~lI~Gg~d-k~~-----~~~~ 359 (454)
T PRK01368 289 IIGVEPKKILESISSFQSLPHRMQYIG-SINNISFYNDSKATNAISAVQSIKALD--NIYWLAGGIP-KEG-----GIEE 359 (454)
T ss_pred HcCCCHHHHHHHHHhCCCCCcceEEEE-EECCeEEEECCCCCCHHHHHHHHHhcC--CeEEEecccC-CCC-----CHHH
Confidence 999999999999999999999999996 357899999999999999999999994 6889999873 332 4666
Q ss_pred hhhhccCccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCC----CEEEEcCCCCCcccccChhhhh
Q 015421 317 LIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG----DAIVLSPGCASFDEFRNFEHRG 392 (407)
Q Consensus 317 ~~~~l~~~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~g----d~vL~~~G~~s~~~~~~~~~r~ 392 (407)
+...+.....+++.|.+++.+.+.+... ..+..++++++|++.+.+.+++| |+||++|+|+|||+|++|++||
T Consensus 360 L~~~~~~v~~v~~~g~~~~~l~~~~~~~---~~~~~~~~l~~Av~~a~~~a~~g~~~~d~VLlSPacaSfD~f~~ye~RG 436 (454)
T PRK01368 360 IKPYFSKIKKAYFYGQAKEIFANTAKNI---VDFVICDNLEQAFDLAYKDAVGDNAEVKNILLAPSCSSYDQFKNFEERG 436 (454)
T ss_pred HHHHHHhhcEEEEECcCHHHHHHHhhcC---CCEEEcCCHHHHHHHHHHHhcCCCCCCCEEEeChhhhccccccCHHHHH
Confidence 7665544667778899999998887542 13556789999999999999998 7999999999999999999999
Q ss_pred HHHHHHHhhh
Q 015421 393 MVFQELAFFS 402 (407)
Q Consensus 393 ~~~~~~~~~l 402 (407)
+.|.++|+.|
T Consensus 437 ~~F~~~v~~~ 446 (454)
T PRK01368 437 ELFIKLSQKF 446 (454)
T ss_pred HHHHHHHHHH
Confidence 9999999976
No 3
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.9e-65 Score=495.56 Aligned_cols=371 Identities=29% Similarity=0.472 Sum_probs=318.4
Q ss_pred eeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccch
Q 015421 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83 (407)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~ 83 (407)
+||.||.++++||.+++|.+.|++++.+.+++++.. ...|+|+||||||||||++|++++|+..|+++..+||+|.|..
T Consensus 72 ~vV~SPGi~~~~p~v~~A~~~gi~i~~dieL~~r~~-~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l 150 (448)
T COG0771 72 LVVKSPGIPPTHPLVEAAKAAGIEIIGDIELFYRLS-GEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPAL 150 (448)
T ss_pred EEEECCCCCCCCHHHHHHHHcCCcEEeHHHHHHHhc-CCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHH
Confidence 799999999999999999999999999999999986 3567999999999999999999999999999999999999998
Q ss_pred hhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeC
Q 015421 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163 (407)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~ 163 (407)
.... ...+.|+.|+|+||.+++.... ++|++++||||++||||||+|+|+|..+|.+|+.++.+ ++|+|.
T Consensus 151 ~~~~-------~~~~~d~~VlElSSfQL~~~~~-~~P~iavilNi~~DHLD~H~s~e~Y~~aK~~i~~~~~~--~~Vin~ 220 (448)
T COG0771 151 ELLE-------QAEPADVYVLELSSFQLETTSS-LRPEIAVILNISEDHLDRHGSMENYAAAKLRILEGQTE--VAVINA 220 (448)
T ss_pred Hhhc-------ccCCCCEEEEEccccccccCcc-CCccEEEEecCCHHHhhhccCHHHHHHHHHHHHcCCcc--EEEEeC
Confidence 7653 1346788999999999998875 89999999999999999999999999999999997654 999999
Q ss_pred CChhhHHHHhc-cccceEEeecCCCcc---cccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcC
Q 015421 164 GNQHLNEAIKG-HRFNLAWIGAFPGVK---IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG 239 (407)
Q Consensus 164 dd~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lg 239 (407)
||+++..+... ....+.+|.....+. +..+... .. .+ ........++++|.||++|+++|+ ++|..+|
T Consensus 221 dd~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~---~~--~~-~~i~~~~~l~l~G~hn~~N~lAa~--a~a~~~g 292 (448)
T COG0771 221 DDAYLKTLADEATKARVIWFSFGEPLADGDYIYDGKL---VF--KG-EKLLPADELKLPGAHNLENALAAL--ALARALG 292 (448)
T ss_pred CcHHHhhhhhhcccceeEEEEccccccccceeecchh---cc--cc-ccccchhhcCCcchhhHHHHHHHH--HHHHHcC
Confidence 99999888765 344566666543321 0001000 00 00 111122368999999999999999 9999999
Q ss_pred CCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccCCCcEEEEECCCCCCCCCCCCcchHhhhh
Q 015421 240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIE 319 (407)
Q Consensus 240 i~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~ 319 (407)
++.+.|.++|++|+++++|||.+. ..+++.+|+||.++|+.|+..||..++ +++++|+|+....++ +..+.+
T Consensus 293 v~~e~i~~~L~~F~gl~HR~e~v~-~~~gv~f~NDSKATN~~At~~AL~~~~-~~v~lI~GG~~Kg~d------f~~L~~ 364 (448)
T COG0771 293 VPPEAILEALSSFTGLPHRLEFVG-EKDGVLFINDSKATNVDATLAALSGFD-GPVILIAGGDDKGAD------FSPLAE 364 (448)
T ss_pred CCHHHHHHHHHhCCCCCcceEEEE-ecCCEEEecCCCCCCHHHHHHHHHcCC-CCEEEEECCCCCCCC------hhHHHH
Confidence 999999999999999999999998 589999999999999999999999998 789999997754433 556777
Q ss_pred hccC-ccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHHH
Q 015421 320 PLNH-HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398 (407)
Q Consensus 320 ~l~~-~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~~ 398 (407)
.+++ ...++++|+....+.+.++..++ .+..++++++|++.+.+.+++||+||+.|+|.|||+|++|++||..|.++
T Consensus 365 ~~~~~~~~~~~~G~~~~~i~~~l~~~~~--~~~~~~~le~Av~~a~~~a~~gd~VLLSPacASfDqf~~feeRG~~F~~~ 442 (448)
T COG0771 365 ILAKVIKKLVLIGEDAEKIAAALKEAGP--SLVICETLEEAVQLARELAQPGDVVLLSPACASFDQFKNFEERGEEFKEL 442 (448)
T ss_pred HhhhcceEEEEeCCCHHHHHHHHHhcCC--ceeecCcHHHHHHHHHHhhcCCCeEEEcccccchhhhcCHHHHHHHHHHH
Confidence 7765 45699999999999999987643 36778999999999999999999999999999999999999999999999
Q ss_pred Hhhhc
Q 015421 399 AFFSK 403 (407)
Q Consensus 399 ~~~l~ 403 (407)
++.|.
T Consensus 443 v~~l~ 447 (448)
T COG0771 443 VSELG 447 (448)
T ss_pred HHHhc
Confidence 99875
No 4
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=4.2e-65 Score=509.68 Aligned_cols=374 Identities=29% Similarity=0.470 Sum_probs=304.8
Q ss_pred eeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCC-CCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccc
Q 015421 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPR-SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82 (407)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~-~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~ 82 (407)
+||+||+++++||++++|+++++|+++++++++++... +.++|+||||||||||++||+++|+..|.++.+.||+|.|+
T Consensus 70 ~vv~spgi~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~GniG~~~ 149 (445)
T PRK04308 70 ILALSPGISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPV 149 (445)
T ss_pred EEEECCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCeEEeCCccHHH
Confidence 69999999999999999999999999999999887621 46899999999999999999999999999989999999998
Q ss_pred hhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEe
Q 015421 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162 (407)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n 162 (407)
....... ...+.|++|+|+|+++++.... ++|+++|||||++||+++|+|+|+|+++|.++++ +++.+|+|
T Consensus 150 ~~~~~~~-----~~~~~d~~VlE~~~~~l~~~~~-~~p~iaviTNI~~DHld~~~t~e~~~~~K~~i~~---~~~~~i~n 220 (445)
T PRK04308 150 LEAELQR-----EGKKADVWVLELSSFQLENTES-LRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFR---GDGVQVLN 220 (445)
T ss_pred HHHHHhh-----cCCCCcEEEEEeChHHhCcCcc-cCCCEEEEecCChHHhcccCCHHHHHHHHHHHhc---CCCEEEEe
Confidence 6644210 1235688999999998887654 8999999999999999999999999999999997 46899999
Q ss_pred CCChhhHHHHhccccceEEeecCCCcccccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCH
Q 015421 163 FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242 (407)
Q Consensus 163 ~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~ 242 (407)
.||+....+... ..++++|+......+........+... +.. ......++++|.||++|+++|+ +++..+|+++
T Consensus 221 ~dd~~~~~~~~~-~~~v~~~~~~~~~d~~~~~~~~~~~~~--~~~-~~~~~~l~l~G~hn~~NalaAi--a~a~~lgi~~ 294 (445)
T PRK04308 221 ADDAFCRAMKRA-GREVKWFSLEHEADFWLERETGRLKQG--NED-LIATQDIPLQGLHNAANVMAAV--ALCEAVGLPR 294 (445)
T ss_pred CCcHHHHHHhhc-CCcEEEecCCCCCceeEeccCCEEEEc--Cce-eeehhccCCcChhhHHHHHHHH--HHHHHcCCCH
Confidence 999987776543 456777764321111000000112221 111 1122468999999999999999 8899999999
Q ss_pred HHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccCCCcEEEEECCCCCCCCCCCCcchHhhhhhcc
Q 015421 243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN 322 (407)
Q Consensus 243 ~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~ 322 (407)
+.|.++|++|++++||||++. ..++..+|||||+|||+|+.++++.+. +++++|+|+|.+.++ +.++...+.
T Consensus 295 ~~i~~~L~~f~~~~~R~e~~~-~~~~~~~iDDs~~~n~~s~~~al~~~~-~~~i~IlGg~~~~~~------~~~~~~~l~ 366 (445)
T PRK04308 295 EALLEHVKTFQGLPHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQ-NPLFVILGGMGKGQD------FTPLRDALA 366 (445)
T ss_pred HHHHHHHhhCCCCCCceEEEE-eeCCeEEEEcCCCCCHHHHHHHHHhCC-CCEEEEeCCCCCCCC------HHHHHHHHH
Confidence 999999999999999999986 357889999999999999999999995 478999998865544 334444444
Q ss_pred C-ccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHHHHhh
Q 015421 323 H-HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFF 401 (407)
Q Consensus 323 ~-~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~~~~~ 401 (407)
. .+.++++|++...+.+.+...+. .+..++++++|++.+.+.+++||+||++|+|+|||+|++|++||+.|+++|+.
T Consensus 367 ~~~~~vil~G~~~~~l~~~l~~~~~--~~~~~~~~e~a~~~~~~~~~~~d~VL~sp~~~S~d~f~~~~~Rg~~F~~~v~~ 444 (445)
T PRK04308 367 GKAKGVFLIGVDAPQIRRDLDGCGL--NLTDCATLEEAVQRAYAQAEAGDIVLLSPACASFDMFKGYAHRSEVFIEAFKA 444 (445)
T ss_pred HhCcEEEEECCCHHHHHHHHHhcCC--CeEecCCHHHHHHHHHHhCCCCCEEEEChhhhhhccccCHHHHHHHHHHHHHh
Confidence 3 68899999998888877754332 34567899999999999999999999999999999999999999999999986
Q ss_pred h
Q 015421 402 S 402 (407)
Q Consensus 402 l 402 (407)
|
T Consensus 445 ~ 445 (445)
T PRK04308 445 L 445 (445)
T ss_pred C
Confidence 5
No 5
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=7e-65 Score=508.77 Aligned_cols=373 Identities=28% Similarity=0.409 Sum_probs=305.7
Q ss_pred eeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccch
Q 015421 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83 (407)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~ 83 (407)
+||+||+++++||++++|++.++|++++++++.+.. +.++|+||||||||||++||+++|+..|.++.++||+|.|+.
T Consensus 80 lVV~Spgi~~~~p~~~~a~~~~i~i~s~~e~~~~~~--~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~~~gniG~p~~ 157 (458)
T PRK01710 80 VIFKTPSMRIDSPELVKAKEEGAYITSEMEEFIKYC--PAKVFGVTGSDGKTTTTTLIYEMLKEEGYKTWVGGNIGTPLF 157 (458)
T ss_pred EEEECCCCCCCchHHHHHHHcCCcEEechHHhhhhc--CCCEEEEECCCCHHHHHHHHHHHHHhCCCCEEECCccChhHH
Confidence 799999999999999999999999999999888765 568999999999999999999999999999989999999987
Q ss_pred hhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeC
Q 015421 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163 (407)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~ 163 (407)
.... ...+.+++|+|+|++++.... ++|+++|||||++||+++|+|+|+|+++|.++++.+++++.+|+|.
T Consensus 158 ~~~~-------~~~~~~~~VlE~~~~~~~~~~--~~PdiaViTNI~~dHld~~~s~e~~~~aK~~i~~~~~~~~~~v~n~ 228 (458)
T PRK01710 158 SNIE-------EIKEEDKVVLELSSFQLMTMD--VSPEVAVVTNLSPNHLDVHKDMEEYIDAKKNIFKYQSENDLLVLNK 228 (458)
T ss_pred HHHh-------hCCCCCEEEEEcCccccccCC--CCCCEEEEecCChhhccccCCHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 4321 122568899999987776543 6999999999999999999999999999999999888889999999
Q ss_pred CChhhHHHHhccccceEEeecCCCccccccc-ccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCH
Q 015421 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEA-KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242 (407)
Q Consensus 164 dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~ 242 (407)
||+.+..+......++++|+...+... ... ....+... +... .....++++|.||++|+++|+ +++..+ +++
T Consensus 229 Dd~~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~~~~~--~~~~-~~~~~l~l~G~hnv~NalaA~--a~a~~~-i~~ 301 (458)
T PRK01710 229 DNEITNGMEKEAKGDVVKFSRKEKVYE-GAYLKNGKLYIR--GKEV-CKKDDIKLKGMHNVENLLAAF--CAVNDD-VSI 301 (458)
T ss_pred CcHHHHHHHhhcCCcEEEEeCCCCCCC-ceEEeCCEEEEc--CceE-EEhhhcCCccHhHHHHHHHHH--HHHHhC-CCH
Confidence 999887776444446777875321100 000 01112221 1111 113578999999999999999 777776 999
Q ss_pred HHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccCCCcEEEEECCCCCCCCCCCCcchHhhhhhcc
Q 015421 243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN 322 (407)
Q Consensus 243 ~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~ 322 (407)
+.|.++|++|++++||||.+. ..++..+|||+||+||.|+.++++.++. ++++|+|+. ++ ...|+++++.+.
T Consensus 302 ~~i~~~L~~f~~~~~R~e~~~-~~~g~~~i~Dsy~~np~s~~~al~~~~~-~~i~IlGg~-~~-----~~~~~~l~~~~~ 373 (458)
T PRK01710 302 ESMKKVATTFSGVEHRCEFVR-EINGVKYYNDSIASSPTRTLAGLKAFEK-PVILIAGGY-DK-----KIPFEPLAEEGY 373 (458)
T ss_pred HHHHHHHHhCCCCCcceEEEE-EECCEEEecccccCCHHHHHHHHHhCCC-CEEEEeCCc-CC-----CCCHHHHHHHHH
Confidence 999999999999999999985 3578999999999999999999999965 689999953 22 236888888764
Q ss_pred -CccEEEEeCCChHHHHHHHHh----CCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHH
Q 015421 323 -HHRCVITFGYSGVLIWKTLVN----NGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397 (407)
Q Consensus 323 -~~~~v~~~g~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~ 397 (407)
..+.++++|+....+.+.++. .+....+..+++.++|++.+.+.+++||+||++|||.|||+|++|++||..|.+
T Consensus 374 ~~~~~vi~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gd~VLlspa~aS~d~f~~~~~RG~~F~~ 453 (458)
T PRK01710 374 EKIKTLILMGATKNKIKEAFEKVISEKGIDIPIVIVNSLEEAVKVAKEIAEKGDIVTLSPACASFDMFPNFEIRGNKFKE 453 (458)
T ss_pred hhccEEEEECCCHHHHHHHHhhcccccCCCcceEEcCCHHHHHHHHHHhCCCCCEEEeChhhcccccccCHHHHHHHHHH
Confidence 368999999999888887742 222123456789999999999999999999999999999999999999999999
Q ss_pred HHhhh
Q 015421 398 LAFFS 402 (407)
Q Consensus 398 ~~~~l 402 (407)
+|+.|
T Consensus 454 ~v~~~ 458 (458)
T PRK01710 454 IVNNL 458 (458)
T ss_pred HHHhC
Confidence 99864
No 6
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.9e-64 Score=505.33 Aligned_cols=369 Identities=28% Similarity=0.434 Sum_probs=303.4
Q ss_pred eeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccch
Q 015421 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83 (407)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~ 83 (407)
+||+||+++++||++++|+++++|++++++++++.. +.++|+||||||||||++||+++|+..|+++.++||+|.|..
T Consensus 71 ~vV~sp~i~~~~p~~~~a~~~~i~i~~~~el~~~~~--~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~p~~ 148 (448)
T PRK03803 71 EIIISPGLALDTPALRAAAAMGIEVIGDIELFAREA--KAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTPAL 148 (448)
T ss_pred EEEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHHhc--CCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCHHHH
Confidence 799999999999999999999999999999998887 468999999999999999999999999999999999999974
Q ss_pred hhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeC
Q 015421 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163 (407)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~ 163 (407)
... ..+.+++|+|+|+++++.+.. ++|+++|||||++||+++|+|+|+|+++|.++++. .+.+|+|.
T Consensus 149 ~~~---------~~~~~~~V~E~ss~~l~~~~~-~~P~iaVITNI~~DHld~~gs~e~~~~~K~~i~~~---~~~~V~n~ 215 (448)
T PRK03803 149 DLL---------SDDPELYVLELSSFQLETTHS-LNAEVATVLNISEDHMDRYSDLEAYHQAKHRIYRG---AKQVVFNR 215 (448)
T ss_pred HHh---------cCCCCEEEEEcChhhhCcCcc-cCccEEEEecCChhHcccCCCHHHHHHHHHHHHhC---CCeEEEeC
Confidence 422 124588999999998887665 89999999999999999999999999999999984 47899999
Q ss_pred CChhhHHHHhccccceEEeecCCC----cccccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcC
Q 015421 164 GNQHLNEAIKGHRFNLAWIGAFPG----VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG 239 (407)
Q Consensus 164 dd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lg 239 (407)
||+.+..+... ..++++|+.... +.+... ....+.... + ...+....++++|.||++|+++|+ +++..+|
T Consensus 216 dd~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~l~l~G~Hn~~NalaAi--a~a~~lg 289 (448)
T PRK03803 216 DDALTRPLVPD-NQPCLSFGLNAPDFDEWGLREG-DGETYLAHG-F-ERLMPVRELKLRGSHNLANALAAL--ALGEAAG 289 (448)
T ss_pred CCHHHHHHhhc-CCcEEEEeCCCCCcCceEEEec-CCeEEEEeC-C-ceEEehhccCCCCHHHHHHHHHHH--HHHHHcC
Confidence 99988776543 245677774311 111000 011122111 1 111122468999999999999999 8999999
Q ss_pred CCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC---CCcEEEEECCCCCCCCCCCCcchHh
Q 015421 240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEK 316 (407)
Q Consensus 240 i~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~V~g~~~~~~~~~~~~~~~~ 316 (407)
++++.|.++|++|++++||||++. ..+++.+|||+|||||+|+.++++.+. ++|+++|+|++.+..+ +++
T Consensus 290 i~~~~i~~~L~~f~g~~~R~e~v~-~~~gv~~idDs~atN~~a~~~al~~l~~~~~~~iilI~Gg~~k~~d------~~~ 362 (448)
T PRK03803 290 LPKEAMLEVLRTFTGLPHRCEWVR-EVAGVDYYNDSKGTNVGATVAAIEGLGAHIQGKLVLIAGGDGKGAD------FSP 362 (448)
T ss_pred CCHHHHHHHHhhCCCCCCceEEEE-EeCCeEEEEcCCcCCHHHHHHHHHhhhhcCCCCEEEEECCCCCCCC------HHH
Confidence 999999999999999999999986 357789999999999999999999984 2578999998755332 445
Q ss_pred hhhhccC-ccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHH
Q 015421 317 LIEPLNH-HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 395 (407)
Q Consensus 317 ~~~~l~~-~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~ 395 (407)
+.+.+.+ .+.++++|+....+.+.++.. ..+..++++++|++.+.+.+++||+||++|+|+|||+|++|++||+.|
T Consensus 363 l~~~l~~~~~~vil~G~~~~~i~~~l~~~---~~~~~~~~~~~a~~~a~~~a~~gdvVL~SPa~aSfd~f~~~~~RG~~F 439 (448)
T PRK03803 363 LREPVAKYVRAVVLIGRDADKIAAALGGA---VPLVRVATLAEAVAKAAELAQAGDIVLLSPACASLDMFKNFEARGDDF 439 (448)
T ss_pred HHHHHHhhCCEEEEECCCHHHHHHHHhcC---CCEEEeCCHHHHHHHHHHhCCCCCEEEeCchhhcccccCCHHHHHHHH
Confidence 6555543 688999999998888877532 135567899999999999999999999999999999999999999999
Q ss_pred HHHHhhhc
Q 015421 396 QELAFFSK 403 (407)
Q Consensus 396 ~~~~~~l~ 403 (407)
.++|+.|-
T Consensus 440 ~~~v~~~~ 447 (448)
T PRK03803 440 RQAVEALA 447 (448)
T ss_pred HHHHHHhh
Confidence 99998763
No 7
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=3.6e-64 Score=501.23 Aligned_cols=364 Identities=29% Similarity=0.430 Sum_probs=298.2
Q ss_pred eeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccch
Q 015421 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83 (407)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~ 83 (407)
+||+||+++++||++++|++.|+|++++++++++.+ +.++|+||||||||||++||+++|+..|.++.++||+|.|..
T Consensus 71 ~vV~SpgI~~~~p~~~~a~~~gi~i~~~~el~~~~~--~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gniG~~~~ 148 (438)
T PRK04663 71 LVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWAV--DKPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNIGVPAL 148 (438)
T ss_pred EEEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhc--CCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEEcccCHHHH
Confidence 699999999999999999999999999999998876 468999999999999999999999999999999999999863
Q ss_pred hhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeC
Q 015421 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163 (407)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~ 163 (407)
.. . ..+.+++|+|+|+++++... .++|+++|||||++||+|+|+|+|+|+++|.++++. .+.+|+|.
T Consensus 149 ~~-~--------~~~~~~~V~E~ss~~l~~~~-~~~p~iavitNi~~dHld~~gs~e~y~~aK~~i~~~---~~~~v~n~ 215 (438)
T PRK04663 149 DL-L--------EQDAELYVLELSSFQLETTS-SLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH---AELAVVNR 215 (438)
T ss_pred hh-h--------cCCCCEEEEEcChhhhccCc-ccCCCEEEEecCChhhCcccCCHHHHHHHHHHHHhC---CCEEEEeC
Confidence 31 1 23568899999999887544 489999999999999999999999999999999984 37999999
Q ss_pred CChhhHHHHhccccceEEeecCC-CcccccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCH
Q 015421 164 GNQHLNEAIKGHRFNLAWIGAFP-GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242 (407)
Q Consensus 164 dd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~ 242 (407)
||+....... ..++++|+... ++.... .....+.....+ . .+....++++|.||++|+++|+ +++..+|+++
T Consensus 216 dd~~~~~~~~--~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~-~-~~~~~~l~l~G~hNv~NalaAi--a~a~~lGi~~ 288 (438)
T PRK04663 216 DDKQTYPDHA--ELQLVTFGFDQQDFGLAQ-HQGREWLADNGQ-P-VLASAELKLVGRHNVANVLVVL--ALLDAAGVDY 288 (438)
T ss_pred CCHHHHhhhc--CCcEEEEecCCCCCCeEe-cCCeEEEEeCCc-e-eeehhhcCCcchhhHHHHHHHH--HHHHHcCCCH
Confidence 9998654432 34577787532 111110 011122221111 1 1123578999999999999999 8999999999
Q ss_pred HHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC-CCcEEEEECCCCCCCCCCCCcchHhhhhhc
Q 015421 243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKVLNGQESNGFEKLIEPL 321 (407)
Q Consensus 243 ~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~-~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l 321 (407)
+.|+++|++|++++||||++.. .+++.+|||+||+||+|+.+|++.+. .+|+++|+|+|.+.++ ++++.+.+
T Consensus 289 ~~i~~~L~~f~g~~~R~e~v~~-~~g~~~idDs~~tn~~s~~~Al~~~~~~~~~i~IlGg~~~~~~------~~~l~~~~ 361 (438)
T PRK04663 289 RKALDALKSYTGLTHRCQVVAD-NHGIKWVNDSKATNVASTLAALSGLEIEGKLYLLVGGVGKGAD------FSPLKPVL 361 (438)
T ss_pred HHHHHHHHhCCCCCCceEEeee-eCCcEEEeCCCcCCHHHHHHHHHhcccCCcEEEEECCccCCCC------HHHHHHHH
Confidence 9999999999999999999963 57889999999999999999999985 3589999999977664 34666665
Q ss_pred cC-ccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHHHHh
Q 015421 322 NH-HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAF 400 (407)
Q Consensus 322 ~~-~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~~~~ 400 (407)
.. .+.++++|+....+..... .+..+++.++|++.+.+.+++||+||+++||.||++|++|++||..|.++|+
T Consensus 362 ~~~~~~vi~~G~~~~~~~~~~~------~~~~~~~~e~av~~~~~~~~~gd~VLlsp~~as~d~f~~~~~RG~~F~~~v~ 435 (438)
T PRK04663 362 ATLNLQLCCFGEDGDQFMPLHP------SARRFDTMEDAIESISPQLKSGDMVMLSPACASFDQFKNFMARGDAFAQLAR 435 (438)
T ss_pred HhhCcEEEEECCCHHHHHHHhc------cCeecCCHHHHHHHHHHhCCCCCEEEECcccccccCcCCHHHHHHHHHHHHH
Confidence 43 3578899998876654331 1345678999999999989999999999999999999999999999999998
Q ss_pred hh
Q 015421 401 FS 402 (407)
Q Consensus 401 ~l 402 (407)
.|
T Consensus 436 ~~ 437 (438)
T PRK04663 436 QY 437 (438)
T ss_pred hh
Confidence 75
No 8
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=6.1e-64 Score=504.30 Aligned_cols=371 Identities=26% Similarity=0.373 Sum_probs=295.7
Q ss_pred eeeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCC-----CCCcEEEEecCCChHhHHHHHHHHHHhcCCceeeccc
Q 015421 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIP-----RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (407)
Q Consensus 3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~-----~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~ 77 (407)
-+||.||.++++||++++|++.|+|++++++++++... .+.++|+||||||||||++||+++|+..|.++.+.||
T Consensus 72 D~VV~SpGi~~~~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~~~~~Gn 151 (488)
T PRK03369 72 ALVVTSPGFRPTAPVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGN 151 (488)
T ss_pred CEEEECCCCCCCCHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCceEEeCC
Confidence 37999999999999999999999999999999876531 1347999999999999999999999999998899999
Q ss_pred CCccchhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCc
Q 015421 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTK 157 (407)
Q Consensus 78 ~g~~~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~ 157 (407)
+|.|+... + ..+.+++|+|+|+++++.+. .++|+++|||||++||+++|||+|+|+++|.+|++ ++
T Consensus 152 iG~p~~~~-~--------~~~~~~~VlE~ss~ql~~~~-~~~P~vaVITNI~~DHLd~~gt~e~ya~aK~~I~~----~~ 217 (488)
T PRK03369 152 IGSPVLDV-L--------DEPAELLAVELSSFQLHWAP-SLRPEAGAVLNIAEDHLDWHGTMAAYAAAKARALT----GR 217 (488)
T ss_pred CchHHHHh-c--------cCCCCEEEEECChHHhCccc-ccCCCEEEEcCCCHHHhhhcCCHHHHHHHHHHHhc----CC
Confidence 99998432 1 24668899999999887653 48999999999999999999999999999999997 37
Q ss_pred eEEEeCCChhhHHHHhccccc-eEEeecCC----CcccccccccceeEec--cCCeeeeeeecccCCCChhHHHHHHHHH
Q 015421 158 LGLLPFGNQHLNEAIKGHRFN-LAWIGAFP----GVKIDTEAKTASFEVP--AVGVVSQLQLHNMKVMGRHNYHNAAVAA 230 (407)
Q Consensus 158 ~~v~n~dd~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~G~~~~~Nal~A~ 230 (407)
.+|+|.||+....+....... ...++... ++.+. ...+... ..+.. ......++++|.||++|+++|+
T Consensus 218 ~~Vln~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~l~l~G~hnv~NalaAl 292 (488)
T PRK03369 218 VAVVGLDDSRAAALLDTAPAPVRVGFRLGEPAAGELGVR----DGHLVDRAFADDLR-LAPVASIPVPGPVGVLDALAAA 292 (488)
T ss_pred EEEEECCCHHHHHHHHhCCCcEEEEEeCCCCCcCCceEE----CCEEEEeccCCccc-eechhhcCCCcHhHHHHHHHHH
Confidence 999999999887765433221 22232111 11110 0011000 00100 0112468899999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccCCCcEEEEECCCCCCCCCCC
Q 015421 231 LSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQE 310 (407)
Q Consensus 231 ~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~ 310 (407)
+++..+|++++.|.++|++|++++||||++. ..+++.+|||||||||+|+.++++.++ ++++|+|++.+..
T Consensus 293 --a~a~~lGi~~e~i~~~L~~f~~~~gR~E~v~-~~~gv~iIDDS~AhNp~s~~aal~~~~--~iilI~GG~~k~~---- 363 (488)
T PRK03369 293 --ALARAVGVPAGAIADALASFRVGRHRAEVVA-VADGITYVDDSKATNPHAARASILAYP--RVVWIAGGLLKGA---- 363 (488)
T ss_pred --HHHHHcCCCHHHHHHHHHhCCCCCCccEEEE-cCCCEEEEECCCCCCHHHHHHHHHhCC--CeEEEecCcCCCC----
Confidence 8999999999999999999999999999996 357889999999999999999999884 6899997665422
Q ss_pred CcchHhhhhhcc-CccEEEEeCCChHHHHHHHHhCCCCcccccc----------------------c----------cHH
Q 015421 311 SNGFEKLIEPLN-HHRCVITFGYSGVLIWKTLVNNGLSIPCFAV----------------------A----------NMK 357 (407)
Q Consensus 311 ~~~~~~~~~~l~-~~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~----------------------~----------~~~ 357 (407)
.++.+.+.+. ..+.++++|+....+.+.+........+..+ + +++
T Consensus 364 --d~~~l~~~l~~~~~~vi~iG~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 441 (488)
T PRK03369 364 --SVDALVAEMASRLVGAVLIGRDRAVVAEALSRHAPDVPVVQVVTGEDAGMPATPEVPVACVTDVADDDGETLGDAVMA 441 (488)
T ss_pred --CHHHHHHHHhhheeEEEEEcCCHHHHHHHHHhcCCCCCEEEeccccccccccccccccccccccccccccccchhhHH
Confidence 3556777665 3688999999999998888642111112222 1 599
Q ss_pred HHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHHHHhhhc
Q 015421 358 DAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFFSK 403 (407)
Q Consensus 358 ~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~~~~~l~ 403 (407)
+|++.|.+.+++||+||++|+|+|||+|++|++||+.|.++|+.|.
T Consensus 442 ~av~~a~~~a~~gd~vLlSPacaSfd~f~~y~~RG~~F~~~v~~~~ 487 (488)
T PRK03369 442 AAVAAARRLARPGDTVLLAPAGASFDQFTGYGDRGDAFAAAVRAAI 487 (488)
T ss_pred HHHHHHHHhCCCCCEEEeChhhcccccccCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999874
No 9
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.5e-63 Score=500.54 Aligned_cols=375 Identities=28% Similarity=0.374 Sum_probs=302.8
Q ss_pred eeeeeccccCcCcH----HHHHHHhcCCceeeHHHHHHhhCC---CCCcEEEEecCCChHhHHHHHHHHHHhcCCceeec
Q 015421 3 MLWLFLLEFQLKAT----GLACLLQSGKRVMSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVG 75 (407)
Q Consensus 3 ~~~~~~~~~~~~~p----~l~~a~~~~~~~l~~~~~~~~~~~---~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~ 75 (407)
-+||+||+++++|| ++..|++.|+|++++++++++... .+.++|+||||||||||++||+++|+..|.++.++
T Consensus 67 d~vv~sp~i~~~~~~~~~~v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~~~~ 146 (460)
T PRK01390 67 AALVLSPGVPLTHPKPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAGRDVQMG 146 (460)
T ss_pred CEEEECCCCCccCCcccHHHHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCCeEEc
Confidence 36999999999987 999999999999999999987641 25789999999999999999999999999999999
Q ss_pred ccCCccchhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCC
Q 015421 76 GNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVN 155 (407)
Q Consensus 76 g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~ 155 (407)
||+|.|+..... ..+.+++|+|+|+++++.++. ++|+++|||||++||+++|||+|+|+++|+++++..++
T Consensus 147 gnig~~~~~~~~--------~~~~~~~V~E~~~~~ld~t~~-i~P~iaVITNI~~DHld~lgsle~ia~~K~~ii~~~~~ 217 (460)
T PRK01390 147 GNIGTAVLTLEP--------PPAGRVYVLELSSYQIDLAPS-LDPDVGVLLNLTPDHLDRHGTMEGYAAAKERLFAGQGP 217 (460)
T ss_pred Cccchhhhhccc--------CCCCCEEEEEcCccccccccc-cCCCEEEEecCChhHhcccCCHHHHHHHHHHHHhcCCC
Confidence 999999765421 335689999999988887765 79999999999999999999999999999999997766
Q ss_pred CceEEEeCCChhhHHHHhcc---ccceEEeecCCCc--ccccccccceeEeccCCeeeeeeec--ccCCCChhHHHHHHH
Q 015421 156 TKLGLLPFGNQHLNEAIKGH---RFNLAWIGAFPGV--KIDTEAKTASFEVPAVGVVSQLQLH--NMKVMGRHNYHNAAV 228 (407)
Q Consensus 156 ~~~~v~n~dd~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~G~~~~~Nal~ 228 (407)
+.+|+|.||+.+..+.... ..++++++..... ..... ....+... .+........ .++++|.||++|+++
T Consensus 218 -~~~V~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~l~G~hn~~Na~a 294 (460)
T PRK01390 218 -DTAVIGVDDAYCRAIADRLEAAGRRVVRISAGKPLADGVYAD-GGKLVDAR-GGRQVEIADLRGIPSLPGAHNAQNAAA 294 (460)
T ss_pred -CEEEEeCCCHHHHHHHHhccccCceEEEEeCCCCCcCceEEe-CCEEEEec-CCCcceeeeHHhhccCCchhHHHHHHH
Confidence 8999999999877665432 3456667643210 00000 01111111 1100000001 257899999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccCCCcEEEEECCCCCCCCC
Q 015421 229 AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNG 308 (407)
Q Consensus 229 A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~ 308 (407)
|+ +++..+|++.+.|.++|++|++++||||++. ..++..+|||+|||||+|+.++|+.+. ++++|+|++.++.
T Consensus 295 Ai--aa~~~lgi~~~~i~~gL~~~~~~~gR~e~i~-~~~g~~vIdDs~ahNp~s~~~aL~~~~--~i~~I~G~~d~~~-- 367 (460)
T PRK01390 295 AY--AAARALGLSPEEIAAGLASFPGLAHRMEQVG-RRGGVLFVNDSKATNADAAAKALSSFD--RIYWIAGGKPKEG-- 367 (460)
T ss_pred HH--HHHHHcCCCHHHHHHHHHhCCCCCCceEEEe-eeCCcEEEEcCCCCCHHHHHHHHHhCC--CeEEEecCccCCC--
Confidence 99 8889999999999999999999999999996 346789999999999999999999874 7889999654332
Q ss_pred CCCcchHhhhhhccCccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhc----CCCCEEEEcCCCCCccc
Q 015421 309 QESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMA----TNGDAIVLSPGCASFDE 384 (407)
Q Consensus 309 ~~~~~~~~~~~~l~~~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~----~~gd~vL~~~G~~s~~~ 384 (407)
.++.+.......+.++++|.++..+.+.++.. ..+..++++++|++.+.+.+ ++||+||++|||.||++
T Consensus 368 ----~~~~L~~~~~~v~~v~~~g~~~~~l~~~~~~~---~~~~~~~~l~~Av~~a~~~a~~~~~~g~~vllsP~~as~d~ 440 (460)
T PRK01390 368 ----GIESLAPFFPRIAKAYLIGEAAEAFAATLGGA---VPFEICGTLERAVAAAAADAAADGAPEPVVLLSPACASFDQ 440 (460)
T ss_pred ----CHHHHHHHHHhhCEEEEECCCHHHHHHHHhcC---CCEEEeCCHHHHHHHHHHhhhccCCCCCEEEeChhhhcccc
Confidence 34555555444677888999999999888643 13556789999999999999 99999999999999999
Q ss_pred ccChhhhhHHHHHHHhhhc
Q 015421 385 FRNFEHRGMVFQELAFFSK 403 (407)
Q Consensus 385 ~~~~~~r~~~~~~~~~~l~ 403 (407)
|++|++||..|.++|+.|.
T Consensus 441 f~~~~~rg~~f~~~~~~~~ 459 (460)
T PRK01390 441 FKNFEVRGDAFRELVAALP 459 (460)
T ss_pred ccCHHHHHHHHHHHHHHhc
Confidence 9999999999999999875
No 10
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=3.4e-63 Score=498.40 Aligned_cols=379 Identities=27% Similarity=0.425 Sum_probs=304.1
Q ss_pred eeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccch
Q 015421 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83 (407)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~ 83 (407)
+||++|+++++||++++|++.++|++++++++++.. .+.++|+||||||||||++||+++|+..|.++..+||+|.|++
T Consensus 71 ~vv~s~gi~~~~~~~~~a~~~~i~v~~~~~~~~~~~-~~~~~I~VTGT~GKTTTt~ml~~iL~~~g~~~~~~gniG~~~~ 149 (459)
T PRK02705 71 LVVVSPGIPWDHPTLVELRERGIEVIGEIELAWRAL-KHIPWVGITGTNGKTTVTALLAHILQAAGLNAPACGNIGYAAC 149 (459)
T ss_pred EEEECCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhh-cCCCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEecccChhHH
Confidence 689999999999999999999999999999998876 4678999999999999999999999999999888999999987
Q ss_pred hhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeC
Q 015421 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163 (407)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~ 163 (407)
..... ... ...+.+++|+|+|+++++..+. ++|+++|||||++||+++|||+|+|+++|.++++. .+.+|+|.
T Consensus 150 ~~~~~-~~~--~~~~~d~~VlE~~s~~l~~~~~-~~p~iaVITNI~~DHld~~gt~e~~~~~K~~i~~~---~~~~Vln~ 222 (459)
T PRK02705 150 ELALL-RSG--KAQKPDWIVAELSSYQIESSPE-LAPKIGIWTTFTPDHLERHGTLENYFAIKASLLER---SEIRILNG 222 (459)
T ss_pred HHHhh-hhc--cCCCCCEEEEEccccccccCcc-cCCCEEEEecCChhhhcccCCHHHHHHHHHHHhcc---CCEEEEEC
Confidence 65320 000 1346688999999998888776 89999999999999999999999999999999983 57999999
Q ss_pred CChhhHHHHhccccceEEeecCCC-cccccc---cccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcC
Q 015421 164 GNQHLNEAIKGHRFNLAWIGAFPG-VKIDTE---AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG 239 (407)
Q Consensus 164 dd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lg 239 (407)
||+.+..+.... .+.++++.... ...... .......+...+ . .+....++++|.||++|+++|+ +++..+|
T Consensus 223 dd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~l~l~G~hn~~NalaAi--a~a~~lg 297 (459)
T PRK02705 223 DDPYLRQHRSSW-PKGYWTSTQGKASLLGQADGWILEEGWVVERGE-P-LFPLSALKMPGAHNLQNLLLAV--AAARLAG 297 (459)
T ss_pred CCHHHHHHHhcC-CceEEeccCCccccccccceeEecCCEEEECCc-c-eeeHHHcCCccHHHHHHHHHHH--HHHHHcC
Confidence 999887775443 23455543211 110000 000001111111 0 1111368899999999999999 8999999
Q ss_pred CCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccCCCcEEEEECCCCCCCCCCCCcchHhhhh
Q 015421 240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIE 319 (407)
Q Consensus 240 i~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~ 319 (407)
++++.|.++|++|++++||||++. ..+++.+|||+|||||+|+.++++.+++ ++++|+|+|.+.++. .++.+
T Consensus 298 v~~~~i~~~L~~f~~~~gR~e~~~-~~~~~~ii~Ds~a~N~~s~~~al~~l~~-~~i~IlGg~~~~~d~------~~~~~ 369 (459)
T PRK02705 298 LSAEAIAEALRSFPGVPHRLERIG-TINGIDFINDSKATNYDAAEVGLKAVPG-PVILIAGGEAKQGDD------SAWLK 369 (459)
T ss_pred CCHHHHHHHHHhCCCCCCceEEEE-eeCCcEEEEeCCCCCHHHHHHHHHhCCC-CeEEEecCccCCCCH------HHHHH
Confidence 999999999999999999999986 3567899999889999999999999964 789999988765543 23444
Q ss_pred hcc-CccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCC--CEEEEcCCCCCcccccChhhhhHHHH
Q 015421 320 PLN-HHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG--DAIVLSPGCASFDEFRNFEHRGMVFQ 396 (407)
Q Consensus 320 ~l~-~~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~g--d~vL~~~G~~s~~~~~~~~~r~~~~~ 396 (407)
.+. ..+.++++|+.+..+.+.+...+....+..++++++|++.+.+.+++| |+||+.|+|.||++|++|++||+.|.
T Consensus 370 ~l~~~~~~vi~~g~~~~~l~~~l~~~~~~~~~~~~~~~~eA~~~a~~~a~~g~~~~vllsp~~as~d~f~~~~~rg~~F~ 449 (459)
T PRK02705 370 QIKAKAAAVLLFGEAAPTLAQRLQESGYTGEYEIVETLDEAVPRAFELAKELQAKSVLLSPACASFDQYKNFEERGDHFR 449 (459)
T ss_pred HHHhheeEEEEECCCHHHHHHHHHhcCCCcceEEcCCHHHHHHHHHHHhCCCCCCEEEechhhhhhccccCHHHHHHHHH
Confidence 443 368899999998888888865432112556789999999999988999 79999999999999999999999999
Q ss_pred HHHhhhc
Q 015421 397 ELAFFSK 403 (407)
Q Consensus 397 ~~~~~l~ 403 (407)
++|+.|.
T Consensus 450 ~~v~~~~ 456 (459)
T PRK02705 450 QLIQALL 456 (459)
T ss_pred HHHHHHh
Confidence 9999874
No 11
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=5.9e-63 Score=495.24 Aligned_cols=378 Identities=28% Similarity=0.419 Sum_probs=310.2
Q ss_pred eeeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccc
Q 015421 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82 (407)
Q Consensus 3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~ 82 (407)
-+||.+|+++++||++++|++.|+|++++++++++.. +.++|+||||||||||++||+++|+..|.++.+.||+|.|.
T Consensus 70 d~vV~s~gi~~~~~~~~~a~~~~i~v~~~~el~~~~~--~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~~~Gnig~p~ 147 (447)
T PRK02472 70 DLMVKNPGIPYTNPMVEKALEKGIPIITEVELAYLIS--EAPIIGITGSNGKTTTTTLIGEMLKAGGQHALLAGNIGYPA 147 (447)
T ss_pred CEEEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHhc--CCCEEEEeCCCchHHHHHHHHHHHHHCCCCeEEEcccChhh
Confidence 4799999999999999999999999999999876665 56899999999999999999999999999889999999998
Q ss_pred hhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEe
Q 015421 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162 (407)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n 162 (407)
+.... ...+.+++|+|+++.++.... .++|+++|||||++||+++|||+|+|+++|.++++..++.+.+|+|
T Consensus 148 ~~~~~-------~~~~~~~~V~E~ss~~~~~~~-~~~P~iaVITnI~~DHld~~gt~e~i~~~K~~i~~~~~~~~~~v~n 219 (447)
T PRK02472 148 SEVAQ-------KATADDTLVMELSSFQLMGIE-TFRPHIAVITNIYPAHLDYHGTFENYVAAKWNIQKNQTEDDYLVIN 219 (447)
T ss_pred HHHHh-------cCCCCCEEEEEcCchhhCccc-ccCCCEEEEeccChhhhcccCCHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 75321 123458899999987766443 4799999999999999999999999999999999988788999999
Q ss_pred CCChhhHHHHhccccceEEeecCCCcccccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCH
Q 015421 163 FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242 (407)
Q Consensus 163 ~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~ 242 (407)
.||+.+..++.....++++|+...............+... +.. .+...+++++|.||++|+++|+ +++..+|+++
T Consensus 220 ~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~l~l~G~hn~~Na~aAi--a~~~~lgi~~ 294 (447)
T PRK02472 220 FDQEEVKELAKQTKATVVPFSTTEKVEDGAYIKDGALYFK--GEK-IMAADDIVLPGSHNLENALAAI--AAAKLLGVSN 294 (447)
T ss_pred CCcHHHHHHHhhcCceEEEeecCCCCcCceEEECCEEEEC--Cce-EEehhhcCCCCHHHHHHHHHHH--HHHHHcCCCH
Confidence 9999887776555556777775422110000000112221 111 1112368999999999999999 8899999999
Q ss_pred HHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccCCCcEEEEECCCCCCCCCCCCcchHhhhhhcc
Q 015421 243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN 322 (407)
Q Consensus 243 ~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~ 322 (407)
+.|.++|++|++++||||++. ..++..+|||+|||||+|+.++++.+ .+++++|+|+. +++ ..++++.+.+.
T Consensus 295 ~~i~~~L~~f~~~~~R~e~~~-~~~g~~vi~D~~a~N~~s~~~al~~~-~~~ii~I~g~~-~~~-----~~~~~l~~~l~ 366 (447)
T PRK02472 295 EAIREVLSTFSGVKHRLQYVG-TIDGRKFYNDSKATNILATQKALSGF-NQPVVLLAGGL-DRG-----NEFDELVPYLK 366 (447)
T ss_pred HHHHHHHHhCCCCCCcceEEE-EECCeEEEECCCCCCHHHHHHHHHhC-CCCEEEEECCC-CCC-----CCHHHHHHHHh
Confidence 999999999999999999985 35678999999999999999999998 46789999854 222 24778888776
Q ss_pred CccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHHHHhhh
Q 015421 323 HHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFFS 402 (407)
Q Consensus 323 ~~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~~~~~l 402 (407)
+.+.++++|..+..+.+.++..+. .+.+++++++|++.+.+.+++||+||++++|.||++|++|++||..|.++|..|
T Consensus 367 ~~~~v~~~G~~~~~l~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~d~VLls~a~~s~d~f~~~~~Rg~~F~~~v~~~ 444 (447)
T PRK02472 367 NVKAMVVFGETAEKLARAAEKAGI--TVVEADNVEDAVPKAYELSEPGDVILLSPACASWDQYKTFEERGDEFIKAVEEL 444 (447)
T ss_pred ccCEEEEECCCHHHHHHHHHhCCC--ceEEcCCHHHHHHHHHHhCCCCCEEEeCccccccccccCHHHHHHHHHHHHHHh
Confidence 678899999999888887754432 355678999999999988999999999999999999999999999999999998
Q ss_pred ccc
Q 015421 403 KHD 405 (407)
Q Consensus 403 ~~~ 405 (407)
+.|
T Consensus 445 ~~~ 447 (447)
T PRK02472 445 KGK 447 (447)
T ss_pred ccC
Confidence 764
No 12
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.3e-62 Score=493.26 Aligned_cols=378 Identities=26% Similarity=0.366 Sum_probs=294.2
Q ss_pred eeeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhh-----CCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeeccc
Q 015421 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQV-----IPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (407)
Q Consensus 3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~-----~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~ 77 (407)
-+||+||+++++||++++|++.++++++++++.++. +..+.++|+||||||||||++||+++|+..|.++.+.||
T Consensus 76 d~vV~Spgi~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gn 155 (473)
T PRK00141 76 SLVVTSPGWRPDSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFAAQAVGN 155 (473)
T ss_pred CEEEeCCCCCCCCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCcEEEecc
Confidence 379999999999999999999999999999986653 212347999999999999999999999999999999999
Q ss_pred CCccchhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCc
Q 015421 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTK 157 (407)
Q Consensus 78 ~g~~~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~ 157 (407)
+|.|++.... ...+.+++|+|+|+++++... .++|+++|||||++||+|+|+|+|+|+++|.++++ .+
T Consensus 156 ig~p~~~~l~-------~~~~~~~~V~E~ss~~l~~~~-~~~pdiaViTNi~~dHLd~~~s~e~y~~aK~~l~~----~~ 223 (473)
T PRK00141 156 IGVPVSAALV-------AQPRIDVLVAELSSFQLHWSP-TLTPDVGVVLNLAEDHIDWHGSMRDYAADKAKVLR----GP 223 (473)
T ss_pred CChhHHHHHh-------cCCCCCEEEEecCCcccccCc-ccCCCEEEEcCCChhhccccCCHHHHHHHHHHHhh----CC
Confidence 9999874322 134668999999998876543 48999999999999999999999999999999997 36
Q ss_pred eEEEeCCChhhHHHHhcc-ccceEEeecCCCcccccccccceeEeccCCeeeeee-ecccCCCChhHHHHHHHHHHHHHH
Q 015421 158 LGLLPFGNQHLNEAIKGH-RFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVAALSVLG 235 (407)
Q Consensus 158 ~~v~n~dd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~G~~~~~Nal~A~~~a~~ 235 (407)
.+|+|.||+.+..+.... ..++++|+...............+.....+..+.+. ...++++|.||++|+++|+ +++
T Consensus 224 ~~vln~Dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aA~--a~~ 301 (473)
T PRK00141 224 VAVIGADDEYVVQLTSAADLSGLIGFTMGEPAAGQVGVRDGELVDNAFGQNVVLASAEGISPAGPAGVLDALAAA--AVA 301 (473)
T ss_pred EEEEECCCHHHHHHHhhcCCCcEEEEeCCCCCcCcceEECCEEEEecCCCceEEeehhhcCCCcHhHHHHHHHHH--HHH
Confidence 899999999988776443 235677774321000000001112111112122221 2468999999999999999 889
Q ss_pred HHcCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccCCCcEEEEECCC-CCCCCCCCCcch
Q 015421 236 LDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQ-AKVLNGQESNGF 314 (407)
Q Consensus 236 ~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~-~~~~~~~~~~~~ 314 (407)
..+|++.+.+.++|++|++++||||++. ..++..+|||||||||+|++++++.++ ++++|+|++ .+++ +
T Consensus 302 ~~lgi~~~~i~~~l~~~~~~~~R~e~~~-~~~~~~iiDdsyahNp~s~~~~l~~l~--~~~~i~gG~~kdkd-------~ 371 (473)
T PRK00141 302 RSQGVAPEAIARALSSFEVAGHRGQVVA-EHGGVTWIDNSKATNPHAADAALAGHE--SVVWVAGGQLKGAD-------I 371 (473)
T ss_pred HHcCCCHHHHHHHHhhCCCCCCceEEEE-EeCCEEEEEcCCCCCHHHHHHHHHhcC--CEEEEecCccCCCC-------h
Confidence 9999999999999999998888999985 256889999999999999999999985 678999555 5443 3
Q ss_pred HhhhhhccC-ccEEEEeCCChHHHHHHHHhCCC--Ccccccc----ccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccC
Q 015421 315 EKLIEPLNH-HRCVITFGYSGVLIWKTLVNNGL--SIPCFAV----ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 387 (407)
Q Consensus 315 ~~~~~~l~~-~~~v~~~g~~~~~~~~~l~~~~~--~~~~~~~----~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~ 387 (407)
+.+...+.+ .+.++++|.+...+.+.+...-. ....... +++++|++.|.+.+++||+||++|||.|||+|++
T Consensus 372 ~~~~~~l~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~Av~~a~~~a~~gd~VllsPa~aS~d~f~~ 451 (473)
T PRK00141 372 DDLIRTHAPRIKAAVVLGVDRAEIVAALAEHAPDAPVTVTDSTDPEEAMEEAVSAAVSLAEPGDTVLLAPAAASLDMYTG 451 (473)
T ss_pred HHHHHHHHhhccEEEEECCCHHHHHHHHHhcCCCCcEEEecCcccccCHHHHHHHHHHhCCCCCEEEeChhhhccccccC
Confidence 445554432 45677778777667776654211 1111222 2459999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHhhhcc
Q 015421 388 FEHRGMVFQELAFFSKH 404 (407)
Q Consensus 388 ~~~r~~~~~~~~~~l~~ 404 (407)
|++||++|.++|+.|.+
T Consensus 452 ~~~RG~~F~~~v~~l~~ 468 (473)
T PRK00141 452 MGQRGDLFAEAARRTIR 468 (473)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998854
No 13
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=3.5e-62 Score=487.85 Aligned_cols=367 Identities=28% Similarity=0.419 Sum_probs=297.6
Q ss_pred eeeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccc
Q 015421 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82 (407)
Q Consensus 3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~ 82 (407)
-+||++|+++++||++.+|+++|++++++++++++.. +.++|+||||||||||++||+++|+..|.++.++||+|.|.
T Consensus 67 d~vv~spgi~~~~~~~~~a~~~g~~v~~~~el~~~~~--~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gnig~p~ 144 (438)
T PRK03806 67 DLIVASPGIALAHPSLSAAADAGIEIVGDIELFCREA--QAPIVAITGSNGKSTVTTLVGEMAKAAGWKVGVGGNIGLPA 144 (438)
T ss_pred CEEEECCCCCCCCHHHHHHHHCCCeEEEHHHHHhhhc--CCCEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEeCCcchhH
Confidence 3799999999999999999999999999999988765 46899999999999999999999999999999999999986
Q ss_pred hhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccC-CCHHHHHHHHHHhhcccCCCceEEE
Q 015421 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGLL 161 (407)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~-~t~e~i~~~K~~i~~~~~~~~~~v~ 161 (407)
... + ..+.+++|+|+|+++++.+.. ++|+++|||||++||+++| +|+|+|+++|.++++. .+.+|+
T Consensus 145 ~~~-~--------~~~~~~~V~E~ss~~l~~~~~-~~p~iaViTNI~~DHld~~g~s~e~~~~~K~~i~~~---~~~~v~ 211 (438)
T PRK03806 145 LSL-L--------DQECELYVLELSSFQLETTSS-LKAAAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKVCVV 211 (438)
T ss_pred HHh-h--------ccCCCEEEEEccchhhccCcc-cCCCEEEEecCcHHHhccccCCHHHHHHHHHHHHhC---CCeEEE
Confidence 321 1 335688999999998887654 7999999999999999999 6999999999999984 478999
Q ss_pred eCCChhhHHHHhccccceEEeecCC-CcccccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCC
Q 015421 162 PFGNQHLNEAIKGHRFNLAWIGAFP-GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240 (407)
Q Consensus 162 n~dd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi 240 (407)
|.||+.+..+... ..++.+|+... ++..... ....+.....+ . .+..++++++|.||++|+++|+ +++..+|+
T Consensus 212 n~dd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~l~l~G~hn~~Na~aAi--a~a~~lgi 285 (438)
T PRK03806 212 NADDALTMPIRGA-DKRCVSFGVNMGDYHLNRQ-QGETWLRVKGE-K-VLNTKEMKLSGQHNYTNALAAL--ALADAVGI 285 (438)
T ss_pred eCCCHHHHHHhcC-CceEEEEecCCCceEEEec-CCeEEEEecCc-e-eeehhhcCCcccccHHHHHHHH--HHHHHcCC
Confidence 9999988775432 34566776431 1111100 11111111111 0 1123468999999999999999 89999999
Q ss_pred CHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC-CCcEEEEECCCCCCCCCCCCcchHhhhh
Q 015421 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKVLNGQESNGFEKLIE 319 (407)
Q Consensus 241 ~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~-~~~~i~V~g~~~~~~~~~~~~~~~~~~~ 319 (407)
+++.|.++|++|++++||||++. ..++..+|||+|+|||+|++++++.+. .+++++|+|++.+.++ +.++.+
T Consensus 286 ~~~~i~~~L~~f~~~~gR~E~v~-~~~~~~~i~Ds~a~n~~a~~~al~~l~~~~~~i~IlG~~~k~~d------~~~l~~ 358 (438)
T PRK03806 286 PRASSLKALTTFTGLPHRFQLVL-EHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSAD------FSPLAR 358 (438)
T ss_pred CHHHHHHHHHhCCCCCCeEEEEE-eeCCEEEEEcCCCCCHHHHHHHHHhCccCCcEEEEECCcCCCCC------HHHHHH
Confidence 99999999999999999999985 356789999989999999999999986 3578999998755443 445666
Q ss_pred hccC-ccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHHH
Q 015421 320 PLNH-HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398 (407)
Q Consensus 320 ~l~~-~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~~ 398 (407)
.+.+ ...++++|++...+.+.+.. .+.++++.++|++.+.+.+++||+||++|+|.||++|++|++||+.|.++
T Consensus 359 ~l~~~~~~v~~~g~~~~~l~~~~~~-----~~~~~~~~~~av~~a~~~~~~gd~VLlsp~~as~d~f~~~~~RG~~F~~~ 433 (438)
T PRK03806 359 YLNGDNIRLYCFGRDGAQLAALRPE-----VSQLTETMEQAMRLIAPRVQPGDMVLLSPACASLDQFKNFEQRGNEFARL 433 (438)
T ss_pred HHHhhCcEEEEECCCHHHHHHHhhc-----ceEecCCHHHHHHHHHHhCCCCCEEEEChhhhhhcCccCHHHHHHHHHHH
Confidence 5542 34788899988887765422 13456889999999999999999999999999999999999999999999
Q ss_pred Hhhh
Q 015421 399 AFFS 402 (407)
Q Consensus 399 ~~~l 402 (407)
|..|
T Consensus 434 v~~~ 437 (438)
T PRK03806 434 AKEL 437 (438)
T ss_pred HHhh
Confidence 9865
No 14
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=7.1e-62 Score=486.94 Aligned_cols=375 Identities=25% Similarity=0.345 Sum_probs=299.4
Q ss_pred eeeeeccccCcCcHHHHHHHhcCCceeeHHHH-HHhhCCC---CCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccC
Q 015421 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDF-AAQVIPR---SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL 78 (407)
Q Consensus 3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~-~~~~~~~---~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~ 78 (407)
-+||+||+++++||++++|++.++|+++++++ +.+..+. ..++|+||||||||||++||+++|+..|.++.+.||+
T Consensus 71 d~vV~SpgI~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~Gni 150 (468)
T PRK04690 71 DVVVKSPGISPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAGHRTALVGNI 150 (468)
T ss_pred CEEEECCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEcCCC
Confidence 36999999999999999999999999999998 4443311 2479999999999999999999999999988999999
Q ss_pred CccchhhhhhcccCCCCCCCCcEEEEEecccccccCCc-cccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCc
Q 015421 79 GNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTK 157 (407)
Q Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~-~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~ 157 (407)
|.|+..... ...+.+++|+|+|++++..... .++|+++|||||++||+++|+|+|+|.++|.++++...+ +
T Consensus 151 G~p~~~~~~-------~~~~~~~~VlE~ss~q~~~~~~~~~~P~iaVItNI~~DHld~~gs~e~y~~aK~~i~~~~~~-~ 222 (468)
T PRK04690 151 GVPLLEVLA-------PQPAPEYWAIELSSYQTGDVARSGARPELAVVLNLFPEHLDWHGGEARYYRDKLSLVTEGRP-R 222 (468)
T ss_pred CcchHHHhc-------cCCCCcEEEEEecCCcccccccccCCCCEEEEcCCCHHHhcccCCHHHHHHHHHHHHhCCCC-C
Confidence 999854321 1235688999999988765543 389999999999999999999999999999999987543 6
Q ss_pred eEEEeCCChhhHHHHhccccceEEeecCCCcccccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHH
Q 015421 158 LGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD 237 (407)
Q Consensus 158 ~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~ 237 (407)
.+|+|.||+....+.. ...++++|+........ ..+.+.. + ...+....++++|.||++|+++|+ +++..
T Consensus 223 ~~v~n~dd~~~~~~~~-~~~~v~~~~~~~~~~~~-----~~~~~~~-~-~~~~~~~~~~l~G~h~~~Na~~A~--a~~~~ 292 (468)
T PRK04690 223 IALLNAADPRLAALQL-PDSEVVWFNHPDGWHVR-----GDVVYRG-E-QALFDTALVPLPGRHNRGNLCAVL--AALEA 292 (468)
T ss_pred eEEEeCccHHHHHHhc-CCCeEEEeeCCccceec-----ceEEEcC-C-ceEEeeccccCccHhhHHHHHHHH--HHHHH
Confidence 8899999998766532 23466777643211110 1122221 1 111223468899999999999999 88889
Q ss_pred cCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccCCCcEEEEECCCCCCCCCCCCcchHhh
Q 015421 238 IGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317 (407)
Q Consensus 238 lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~ 317 (407)
+|++++.|.++|++|.++|||||++. ..+|+.+||||+||||+|+.++++.++++++++|+|++.+.. .++.+
T Consensus 293 lgi~~~~i~~~l~~~~~~~gR~e~~~-~~~g~~iidDs~ahNp~a~~~al~~~~~~~i~~i~Gg~~k~k------d~~~l 365 (468)
T PRK04690 293 LGLDAVALAPAAAGFRPLPNRLQELG-SRDGITYVNDSISTTPHASLAALDCFAGRRVALLVGGHDRGL------DWTDF 365 (468)
T ss_pred cCCCHHHHHHHHHhCCCCCCCcEEEE-ccCCeEEEEeCCCCCHHHHHHHHHhccCCcEEEEEcCCCCCC------CHHHH
Confidence 99999999999999999999999986 356899999999999999999999987678899999763221 24567
Q ss_pred hhhccC--ccEEEEeCCChHHHHHHHHhCCC--CccccccccHHHHHHHHHH-hcCCCCEEEEcCCCCCcccccChhhhh
Q 015421 318 IEPLNH--HRCVITFGYSGVLIWKTLVNNGL--SIPCFAVANMKDAVNHARR-MATNGDAIVLSPGCASFDEFRNFEHRG 392 (407)
Q Consensus 318 ~~~l~~--~~~v~~~g~~~~~~~~~l~~~~~--~~~~~~~~~~~~a~~~a~~-~~~~gd~vL~~~G~~s~~~~~~~~~r~ 392 (407)
.+.+.+ .+.++++|.+...+.+.+..... ...+..++++++|++.+.+ ...+||+||+.|||.|||+|++|++||
T Consensus 366 ~~~l~~~~~~~v~~~g~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Av~~A~~~~~~~gdvVLlSPa~aSfD~f~~y~~RG 445 (468)
T PRK04690 366 AAHMAQRAPLEIVTMGANGPRIHALLAPLAAAGRFGLHAADDLAHAVRLARTALGAQGGVVLLSPGAPSFGAYRDYVARG 445 (468)
T ss_pred HHHHHhccCeEEEEeCCCHHHHHHHHHhcccccCCceEEcCCHHHHHHHHHHHhCCCCCEEEeCccccccccccCHHHHH
Confidence 666653 37788889888777776654210 1235567899999999988 788999999999999999999999999
Q ss_pred HHHHHHHhhh
Q 015421 393 MVFQELAFFS 402 (407)
Q Consensus 393 ~~~~~~~~~l 402 (407)
+.|.+++..+
T Consensus 446 ~~F~~~~~~~ 455 (468)
T PRK04690 446 RHFAQLAGFD 455 (468)
T ss_pred HHHHHHhccC
Confidence 9999998766
No 15
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=3.1e-61 Score=486.40 Aligned_cols=379 Identities=28% Similarity=0.401 Sum_probs=299.5
Q ss_pred eeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCC--CCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCcc
Q 015421 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPR--SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81 (407)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~--~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~ 81 (407)
+||.++.++|++|++..|.+.|++++++++++++..+. +.++|+||||||||||++||+++|+..|.++.+.||+|.|
T Consensus 81 ~Vv~s~Gi~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~~~~Gnig~~ 160 (480)
T PRK01438 81 LVVTSPGWRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRAAAVGNIGTP 160 (480)
T ss_pred EEEECCCcCCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCeEEECCccHH
Confidence 68999999999999999999999999999998776522 4679999999999999999999999999999899999999
Q ss_pred chhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEE
Q 015421 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161 (407)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~ 161 (407)
+..... ...+++++|+|+|+++++..+. ++|+++|||||++||+++|||+|+|+++|++|++. ..+.+|+
T Consensus 161 ~~~~~~-------~~~~~~~~V~E~ss~~l~~~~~-i~P~iaVITNI~~DHld~lgt~e~ia~~K~~I~~~--~~~~~v~ 230 (480)
T PRK01438 161 VLDAVR-------DPEGYDVLAVELSSFQLHWSPS-VSPHSAAVLNLAPDHLDWHGSMEAYAAAKARIYEG--TTVACVY 230 (480)
T ss_pred HHHHHh-------cCCCCCEEEEEcChHHhCcCcc-cCCCEEEEecCChhhccccCCHHHHHHHHHHHHhC--CCceEEE
Confidence 864321 2446789999999998876654 78999999999999999999999999999999995 2478999
Q ss_pred eCCChhhHHHHhcc----ccceEEeecCC----Ccccccccc-cceeEeccCCeeeeee-ecccCCCChhHHHHHHHHHH
Q 015421 162 PFGNQHLNEAIKGH----RFNLAWIGAFP----GVKIDTEAK-TASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVAAL 231 (407)
Q Consensus 162 n~dd~~~~~~~~~~----~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~l~~~G~~~~~Nal~A~~ 231 (407)
|.||+....+.... ..++++|+... .+....... ...+.....+..+.+. ...++++|.||++|+++|+
T Consensus 231 n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAi- 309 (480)
T PRK01438 231 NVADPATEDLVEEADVVEGARAIGFTLGTPGPSQLGVVDGILVDRAFVEDRQTSALELATLEDLRPAAPHNIANALAAA- 309 (480)
T ss_pred eCCcHHHHHHHhhhcccCCceEEEEeCCCCCCCCceEECCEEEEEeeccccccccceeeeHHHcCCCCHHHHHHHHHHH-
Confidence 99999887765432 34566666421 111100000 0001111000001111 1258999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccCCCcEEEEECC-CCCCCCCCC
Q 015421 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGG-QAKVLNGQE 310 (407)
Q Consensus 232 ~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~-~~~~~~~~~ 310 (407)
+++..+|++.+.|+++|++|++++||||++.. .+++.+|||+|||||+|++++++.+ +++++|+|+ +.+++
T Consensus 310 -a~~~~lgi~~~~i~~~L~~~~~~~gR~E~i~~-~~~~~iiDDs~ahNp~a~~aaL~~l--~~i~~I~gG~~~~kd---- 381 (480)
T PRK01438 310 -ALARSFGVPPAAVRDGLRAFRPDAHRIEHVAD-ADGVTWVDDSKATNPHAAAASLAAY--PSVVWIAGGLAKGAD---- 381 (480)
T ss_pred -HHHHHcCCCHHHHHHHHHhCCCCCCceEEEEE-ECCEEEEecCccCCHHHHHHHHHhC--CCEEEEEecccCCCC----
Confidence 88888999999999999999999999999963 5678899999999999999999999 378899974 44432
Q ss_pred CcchHhhhhhccC-ccEEEEeCCChHHHHHHHHhCCCCccccccc-----cHHHHHHHHHHhcCCCCEEEEcCCCCCccc
Q 015421 311 SNGFEKLIEPLNH-HRCVITFGYSGVLIWKTLVNNGLSIPCFAVA-----NMKDAVNHARRMATNGDAIVLSPGCASFDE 384 (407)
Q Consensus 311 ~~~~~~~~~~l~~-~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~-----~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~ 384 (407)
+..+.+.+.+ .+.++++|.+...+.+.++.......+..++ ++++|++.+.+.+.++|+||+.|+|.||++
T Consensus 382 ---~~~~~~~l~~~~~~vi~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~A~~~a~~~~~~~d~vllsp~~as~d~ 458 (480)
T PRK01438 382 ---FDDLVRRAAGRLRGVVLIGADRAEIAEALARHAPDVPVVEVDRTDTGAMDEAVAAAAKLARPGDTVLLAPAAASMDM 458 (480)
T ss_pred ---HHHHHHHHHhhceEEEEECCCHHHHHHHHHhcCCCCCEEEecCCCcCCHHHHHHHHHHhCCCCCEEEechhhhcccc
Confidence 3445555543 6889999999888888786531111233334 899999999999999999999999999999
Q ss_pred ccChhhhhHHHHHHHhhhcc
Q 015421 385 FRNFEHRGMVFQELAFFSKH 404 (407)
Q Consensus 385 ~~~~~~r~~~~~~~~~~l~~ 404 (407)
|++|++||+.|.++|+.|..
T Consensus 459 f~~~~~Rg~~F~~~v~~~~~ 478 (480)
T PRK01438 459 FTDYAARGDAFAAAVRALLG 478 (480)
T ss_pred ccCHHHHHHHHHHHHHHhhC
Confidence 99999999999999998754
No 16
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.8e-60 Score=482.04 Aligned_cols=382 Identities=30% Similarity=0.434 Sum_probs=301.2
Q ss_pred eeeeeccccCcCc----HHHHHHHhcCCceeeHHHHHHhhCC------CCCcEEEEecCCChHhHHHHHHHHHHhcCCce
Q 015421 3 MLWLFLLEFQLKA----TGLACLLQSGKRVMSELDFAAQVIP------RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 3 ~~~~~~~~~~~~~----p~l~~a~~~~~~~l~~~~~~~~~~~------~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~ 72 (407)
-+||+||+++++| |++++|++.++|++++++++++.+. ...++|+||||||||||++||+++|+..|+++
T Consensus 71 d~vv~sp~I~~~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~ 150 (498)
T PRK02006 71 DLVALSPGLSPLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKKV 150 (498)
T ss_pred CEEEECCCCCCcccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCE
Confidence 3799999999998 9999999999999999999877651 13489999999999999999999999999999
Q ss_pred eecccCCccchhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcc
Q 015421 73 FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH 152 (407)
Q Consensus 73 ~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~ 152 (407)
.+.||++.+.......... .....+++|+|+|+++++.... ++|+++|||||++||+++|+|+|+|+++|.++++
T Consensus 151 ~~~Gni~~~~~~~~~~~~~---~~~~~~~~V~E~ss~~l~~~~~-~~p~iaviTNI~~DHld~~gs~e~y~~aK~~i~~- 225 (498)
T PRK02006 151 AVAGNISPAALDKLMEAID---AGALPDVWVLELSSFQLETTHT-LAPDAATVLNITQDHLDWHGSMAAYAAAKARIFG- 225 (498)
T ss_pred EEECCCCHHHHHHHHHhhc---cCCCCcEEEEEccHHHhCcccc-cCCCEEEEcCCChhhhcccCCHHHHHHHHHHHcC-
Confidence 8889988664432111110 0112378999999988866544 7999999999999999999999999999999998
Q ss_pred cCCCceEEEeCCChhhHHHHhcc-ccceEEeecCCC-----cccccccccceeEeccCCee-------------------
Q 015421 153 MVNTKLGLLPFGNQHLNEAIKGH-RFNLAWIGAFPG-----VKIDTEAKTASFEVPAVGVV------------------- 207 (407)
Q Consensus 153 ~~~~~~~v~n~dd~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~------------------- 207 (407)
+++.+|+|.|||.+..+.... ..++++|+.... +..... ....+.+......
T Consensus 226 --~~~~~Vln~dd~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (498)
T PRK02006 226 --PRTVRVLNRDDARVMAMAPPGGAADAVTFGLDEPAADGDYGLLRD-NGMAWLVEAEDRDAADPAPSRRRKKDAAPPPD 302 (498)
T ss_pred --CCCEEEEeCCCHHHHHHhhccCCccEEEEeCCCccccccceEEec-CCeEEEEecCcccccccccccccccccccccc
Confidence 468999999999988776443 235677775311 111000 0000111100000
Q ss_pred e---eee-ecccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHH
Q 015421 208 S---QLQ-LHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEAT 283 (407)
Q Consensus 208 ~---~~~-~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~ 283 (407)
. .+. ...++++|.||++|+++|+ +++..+|++++.+.++|++|++++||||++.. .+++.+|||||+|||+|+
T Consensus 303 ~~~~~~~~~~~l~l~G~hn~~NalaAi--a~~~~lgi~~~~i~~aL~~f~~~~gR~e~~~~-~~g~~~idDs~~tn~~s~ 379 (498)
T PRK02006 303 IRLKRLMPADALRIRGLHNAANALAAL--ALARAIGLPAAPLLHGLREYRGEPHRVELVAT-IDGVDYYDDSKGTNVGAT 379 (498)
T ss_pred cchhceeeHhhcCCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHhhCCCCCCceEEEEE-ECCEEEEEcCCCCCHHHH
Confidence 0 111 1368999999999999999 89999999999999999999999999999863 578899999999999999
Q ss_pred HHHHhccCCCcEEEEECCCCCCCCCCCCcchHhhhhhcc-CccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHH
Q 015421 284 CTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN-HHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNH 362 (407)
Q Consensus 284 ~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~-~~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ 362 (407)
.++++.++ +|+++|+|++.+..+ ++++.+.+. ..+.|+++|++...+.+.+...+ ..+..++++++|++.
T Consensus 380 ~~al~~~~-~~ii~IlGg~~~~~~------~~~~~~~l~~~~~~vi~~G~~~~~i~~~~~~~~--~~~~~~~~~~eAi~~ 450 (498)
T PRK02006 380 VAALDGLA-QRVVLIAGGDGKGQD------FSPLAAPVARHARAVVLIGRDAPAIRAALAGTG--VPLVDAATLEEAVRA 450 (498)
T ss_pred HHHHHhCC-CCEEEEEcCCCCCCC------HHHHHHHHHHhCCEEEEEcCCHHHHHHHHhhCC--CceEecCCHHHHHHH
Confidence 99999984 578999998754332 334444443 36899999999988888775433 235667899999999
Q ss_pred HHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHHHHhhhcc
Q 015421 363 ARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFFSKH 404 (407)
Q Consensus 363 a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~~~~~l~~ 404 (407)
+.+.+++||+||+.|+|+||++|++|++||..|.++|+.|+-
T Consensus 451 a~~~~~~gd~VLlsp~~~S~d~f~~~~~Rg~~F~~~v~~~~~ 492 (498)
T PRK02006 451 AAALAQPGDAVLLSPACASLDMFRNYAHRAEVFRAAVEELAL 492 (498)
T ss_pred HHHhcCCCCEEEEChhhcccccccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998853
No 17
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.2e-58 Score=464.41 Aligned_cols=377 Identities=28% Similarity=0.474 Sum_probs=304.2
Q ss_pred eeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccch
Q 015421 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83 (407)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~ 83 (407)
+||+++.++++||++.+|++.|++++++++.+++.. + .++|+||||||||||++||+++|+..|.++.+.||+|.|+.
T Consensus 71 ~vv~~~g~~~~~~~~~~a~~~~i~~~~~~~~~~~~~-~-~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~~~~g~ig~~~~ 148 (450)
T PRK14106 71 LVVVSPGVPLDSPPVVQAHKKGIEVIGEVELAYRFS-K-APIVAITGTNGKTTTTTLLGEIFKNAGRKTLVAGNIGYPLI 148 (450)
T ss_pred EEEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHhhc-C-CCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEeCcccHHHH
Confidence 688999999999999999999999999999999876 4 79999999999999999999999999988889999999886
Q ss_pred hhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeC
Q 015421 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163 (407)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~ 163 (407)
..... ..+.+++|+|+|++.+.... .++|+++|||||+.||+++|||+|+|+++|.++++..++.+.+++|.
T Consensus 149 ~~~~~-------~~~~~~~v~E~~~~~~~~~~-~~~P~i~VITnI~~dHl~~~gt~e~ia~~K~~i~~~~~~~~~~vln~ 220 (450)
T PRK14106 149 DAVEE-------YGEDDIIVAEVSSFQLETIK-EFKPKVGCILNITPDHLDRHKTMENYIKAKARIFENQRPSDYTVLNY 220 (450)
T ss_pred HHHhc-------CCCCCEEEEEcChhhhcccc-ccCCCEEEEecCCcchhcccCCHHHHHHHHHHHHhCCCCCCEEEEeC
Confidence 54221 23568899999987654333 48999999999999999999999999999999999888889999999
Q ss_pred CChhhHHHHhccccceEEeecCCCcccccccccceeEeccCCeeeee-eecccCCCChhHHHHHHHHHHHHHHHHcCCCH
Q 015421 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242 (407)
Q Consensus 164 dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~ 242 (407)
||+.+..++...+.++++|+.+.............+.+...+..... ....++++|.||++|+++|+ +++..+|+++
T Consensus 221 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~h~~~Na~aAi--a~~~~lgi~~ 298 (450)
T PRK14106 221 DDPRTRSLAKKAKARVIFFSRKSLLEEGVFVKNGKIVISLGGKEEEVIDIDEIFIPGEHNLENALAAT--AAAYLLGISP 298 (450)
T ss_pred CcHHHHHHHhhcCceEEEEecCccCcCceEEECCEEEEecCCCcceEEEHHHcCCCCHHHHHHHHHHH--HHHHHcCCCH
Confidence 99988877766666778887542111000000112222222211111 12368999999999999999 8899999999
Q ss_pred HHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccCCCcEEEEECCCCCCCCCCCCcchHhhhhhcc
Q 015421 243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN 322 (407)
Q Consensus 243 ~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~ 322 (407)
+++.++|++|.+++||||.+.. .++..+|+|+|||||+|++++++.+.. ++++|+|.+. ++ ..++++...+.
T Consensus 299 ~~i~~~L~~~~~~~gR~e~i~~-~~~~~vi~D~~ahNP~s~~~~l~~l~~-~~i~v~g~~~-~~-----k~~~~~~~~l~ 370 (450)
T PRK14106 299 DVIANTLKTFKGVEHRIEFVAE-INGVKFINDSKGTNPDAAIKALEAYET-PIVLIAGGYD-KG-----SDFDEFAKAFK 370 (450)
T ss_pred HHHHHHHHhCCCCCcceEEEee-ECCEEEEeCCCccCHHHHHHHHHhCCC-CeEEEeCCcC-CC-----CCHHHHHHHHH
Confidence 9999999999999999999852 456889999889999999999999853 6788887662 22 13556666554
Q ss_pred C-ccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHHHHhh
Q 015421 323 H-HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFF 401 (407)
Q Consensus 323 ~-~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~~~~~ 401 (407)
. .+.++++|..+..+.+.+...+. ..+.++++++++++.+.+.++++|+||+++.+.++++|++|++||+.|.++|..
T Consensus 371 ~~~~~vi~~g~~~~~l~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~d~ilv~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (450)
T PRK14106 371 EKVKKLILLGETAQEIAEAARKYGF-DNILFAETLEEAVKKAYEIAKPGDVVLLSPACASWDMFKNFEERGRLFKELVLE 449 (450)
T ss_pred hhCCEEEEEcCCHHHHHHHHhhCCC-CcEEEeCCHHHHHHHHHHhCCCCCEEEEChhhhccccccCHHHHHHHHHHHHHh
Confidence 3 68888899988888887754432 134567899999999998889999999999999999999999999999999864
No 18
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.8e-58 Score=451.80 Aligned_cols=344 Identities=24% Similarity=0.362 Sum_probs=277.0
Q ss_pred eeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccch
Q 015421 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83 (407)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~ 83 (407)
+||+||+++++||++++|++ ++++++++++.. .++|+||||||||||++|++++|+..|. ..+||+|.|++
T Consensus 57 ~vv~sp~i~~~~~~~~~a~~----i~~~~e~~~~~~---~~~i~ITGT~GKTTTt~ml~~iL~~~g~--~~~gniG~p~~ 127 (401)
T PRK03815 57 LEIPSPGIPPSHPLIQKAKN----LISEYDYFYDVM---PFSIWISGTNGKTTTTQMTTHLLEDFGA--VSGGNIGTPLA 127 (401)
T ss_pred EEEECCCCCCCCHHHHHHHH----HhhHHHHHHHhc---CCEEEEECCCcHHHHHHHHHHHHHHCCC--cEEEEecHhHH
Confidence 69999999999999999987 799999988765 3499999999999999999999999984 35889999987
Q ss_pred hhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeC
Q 015421 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163 (407)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~ 163 (407)
. + ..+.+++|+|+|+.+++... .++|+++|||||++||+++|+|+|+|+++|.+|++.+++++.+|+|.
T Consensus 128 ~--~--------~~~~~~~V~E~ss~~~~~~~-~~~p~iavitNi~~dHld~~~s~e~~~~~k~~i~~~~~~~~~~v~n~ 196 (401)
T PRK03815 128 E--L--------DKNAKIWVLETSSFTLHYTN-KAKPNIYLLLPITPDHLSWHGSFENYVKAKLKPLKRMNEGDVAILPK 196 (401)
T ss_pred h--c--------CCCCCEEEEECChHHhhCCc-cCCCcEEEEcCCcccchhhcCCHHHHHHHHHHHHhCCCcCCEEEEec
Confidence 5 2 23458899999987765544 37999999999999999999999999999999999998899999999
Q ss_pred CChhhHHHHhccccceEEeecCCCcccccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCHH
Q 015421 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVE 243 (407)
Q Consensus 164 dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~~ 243 (407)
||+... ...++++|+...+. . ..+.+.. ..+.+.+. +++|+++|+ +++..+|+ +
T Consensus 197 dd~~~~-----~~~~~~~fg~~~~~------~-~~~~~~~---------~~~~~~~~-~~~NalaA~--a~a~~~G~--~ 250 (401)
T PRK03815 197 KFKNTP-----TKAQKIFYEDEEDL------A-EKFGIDS---------EKINFKGP-FLLDALLAL--AVYKILFD--E 250 (401)
T ss_pred cccccc-----cCCcEEEEecCCcc------c-cceeEeh---------HhcCCchH-HHHHHHHHH--HHHHHhCc--H
Confidence 998632 12356677632110 0 0111111 12334454 499999999 89999994 5
Q ss_pred HHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccCCCcEEEEECCCCCCCCCCCCcchHhhhhhccC
Q 015421 244 ALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323 (407)
Q Consensus 244 ~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~ 323 (407)
.+.++|++|+|+++|||++. ..+++.+||||||+||+|+.++++.++++|+++|+|+. +++ ..++++++.+..
T Consensus 251 ~~~~~L~~f~~~~~R~e~~~-~~~gv~~idDs~~tn~~a~~~al~~~~~~~ii~IlGG~-~k~-----~~~~~l~~~~~~ 323 (401)
T PRK03815 251 LDYERLNAFKIGKHKLEEFR-DKQGRLWVDDSKATNVDATLQALKRYKDKKIHLILGGD-DKG-----VDLTPLFEFMKN 323 (401)
T ss_pred HHHHHHHhCCCCCceEEEEE-EECCEEEEECCCCCCHHHHHHHHHhCCCCCEEEEECCC-CCC-----CCHHHHHHHHHh
Confidence 56678999999999999986 35889999999999999999999998656789999953 222 245678887754
Q ss_pred c-cEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHHHHhhh
Q 015421 324 H-RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFFS 402 (407)
Q Consensus 324 ~-~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~~~~~l 402 (407)
. ..++++|+....+.+.+...+ ..+..+++.+++++.+.+.+++||+||++|||.|||+|+||++||..|.++|+.|
T Consensus 324 ~~~~v~~~G~~~~~~~~~~~~~~--~~~~~~~~~e~av~~~~~~~~~gdvVLlSPa~aSfd~f~ny~~RG~~F~~~v~~l 401 (401)
T PRK03815 324 LNIELYAIGSNTEKIQALAKEFN--IKAFVCEFLEKAVEEIKKVLKQNEVALLSPAAASLDQFKSYKERGEKFKAFVLKL 401 (401)
T ss_pred hCcEEEEECCCHHHHHHHHhcCC--CeEEEeCCHHHHHHHHHHhCCCCCEEEeChhhhccccccCHHHHHHHHHHHHHhC
Confidence 2 248899998877777664332 2344567899999999988999999999999999999999999999999999865
No 19
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=100.00 E-value=8.4e-57 Score=449.55 Aligned_cols=365 Identities=18% Similarity=0.250 Sum_probs=275.6
Q ss_pred eeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeeccc----CC
Q 015421 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LG 79 (407)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~----~g 79 (407)
.||++..+++++|.+.- ++....++.++..++.. .+.++|+||||||||||++||+++|+..|.++.+.|| +|
T Consensus 64 ~vv~~~~~~~~~p~i~v--~d~~~al~~la~~~~~~-~~~~vI~VTGSnGKTTT~~ml~~iL~~~g~~~~t~gn~n~~~G 140 (453)
T PRK10773 64 ALLVSRPLDIDLPQLVV--KDTRLAFGQLAAWVRQQ-VPARVVALTGSSGKTSVKEMTAAILRQCGNTLYTAGNLNNDIG 140 (453)
T ss_pred EEEEecCcCCCCCEEEE--CCHHHHHHHHHHHHHhc-CCCCEEEEcCCCchHHHHHHHHHHHHhcCcccccCccccCCcc
Confidence 35555555445554321 11112344444333322 2468999999999999999999999999988778777 56
Q ss_pred ccchhhhhhcccCCCCCCCCcEEEEEecc---cccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCC
Q 015421 80 NPLSEAAFHCIALPSSKPKFQVAVVEVSS---YQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNT 156 (407)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~V~E~g~---~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~ 156 (407)
.|.+.... .++++++|+|+|+ ++++.....++|+++|||||++||+++|+|+|+|+++|.+|++.++++
T Consensus 141 ~~~~~~~~--------~~~~~~~V~E~g~~~~gei~~~~~~~~p~iaViTNI~~dHld~~gs~e~~~~aK~~l~~~~~~~ 212 (453)
T PRK10773 141 VPLTLLRL--------TPEHDYAVIELGANHQGEIAYTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPEN 212 (453)
T ss_pred cccHHhcC--------CCCCcEEEEEcCCCCcchhHHhcCccCCCEEEEeCCCHHHHhhcCCHHHHHHHHHHHHcccCCC
Confidence 66553322 4567899999995 455545556899999999999999999999999999999999988888
Q ss_pred ceEEEeCCChhhHHHHhcccc-ceEEeecCC----Ccccc---cccccceeEeccCCeeeeeeecccCCCChhHHHHHHH
Q 015421 157 KLGLLPFGNQHLNEAIKGHRF-NLAWIGAFP----GVKID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAV 228 (407)
Q Consensus 157 ~~~v~n~dd~~~~~~~~~~~~-~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~ 228 (407)
+.+|+|.|||....+...... .+.+|+... ++... .......|.+...+.. ..+.+|++|.||++|+++
T Consensus 213 g~~vln~Dd~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~i~~~~~~~~f~~~~~~~~---~~~~l~l~G~hnv~Nala 289 (453)
T PRK10773 213 GIAIMNADSNDWLNWQSVIGSKTVWRFSPNAANSVDFTATNIHVTSHGTEFTLHTPTGS---VDVLLPLPGRHNIANALA 289 (453)
T ss_pred CEEEEECCcHhHHHHHHHhcCCcEEEEeCCCCCcCcEEEEEEEEeCCeeEEEEEecCce---EEEEecCCcHhHHHHHHH
Confidence 999999999987766543322 456677431 11111 0111112222211111 124789999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC--CCcEEEEECCCCCCC
Q 015421 229 AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQAKVL 306 (407)
Q Consensus 229 A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~--~~~~i~V~g~~~~~~ 306 (407)
|+ +++..+|++++.|.++|++|++++||||.+.. .++.+||||+|||||+|++++++.+. ++|+++|+|+|.|+|
T Consensus 290 Ai--a~a~~lGi~~~~i~~~L~~~~~~~gR~e~v~~-~~g~~iIDDsYn~nP~s~~aaL~~l~~~~~r~i~VlG~m~elG 366 (453)
T PRK10773 290 AA--ALAMSVGATLDAVKAGLANLKAVPGRLFPIQL-AEGQLLLDDSYNANVGSMTAAAQVLAEMPGYRVMVVGDMAELG 366 (453)
T ss_pred HH--HHHHHcCCCHHHHHHHHHhCCCCCCceeEEEC-CCCeEEEEcCCCCCHHHHHHHHHHHHhCCCCEEEEECChhhcc
Confidence 99 89999999999999999999999999999853 46789999999999999999998874 357899999999999
Q ss_pred CCCCCcchHhhhhhcc--CccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCC--EEEEcCCCCCc
Q 015421 307 NGQESNGFEKLIEPLN--HHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGD--AIVLSPGCASF 382 (407)
Q Consensus 307 ~~~~~~~~~~~~~~l~--~~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd--~vL~~~G~~s~ 382 (407)
..+.+ .|+++++.+. ..|.++++|+.+..+.+.. +. . .+++|.+++.+.+...+++|| +||+| |
T Consensus 367 ~~~~~-~h~~~~~~~~~~~~d~v~~~G~~~~~~~~~~---~~--~-~~~~~~~~~~~~l~~~~~~gd~~~vL~K-g---- 434 (453)
T PRK10773 367 AESEA-CHRQVGEAAKAAGIDKVLSVGKLSHAISEAS---GV--G-EHFADKTALIARLKALLAEHQVITILVK-G---- 434 (453)
T ss_pred hHHHH-HHHHHHHHHHHcCCCEEEEEChhHHHHHHhc---CC--C-eeECCHHHHHHHHHHhhcCCCceEEEEE-e----
Confidence 88744 7889998875 3799999998776665531 11 1 346899999999999999999 58887 5
Q ss_pred ccccChhhhhHHHHHHHhhhcc
Q 015421 383 DEFRNFEHRGMVFQELAFFSKH 404 (407)
Q Consensus 383 ~~~~~~~~r~~~~~~~~~~l~~ 404 (407)
||++.||++++.|++
T Consensus 435 -------sr~~~le~i~~~l~~ 449 (453)
T PRK10773 435 -------SRSAAMEEVVRALQE 449 (453)
T ss_pred -------CCcCCHHHHHHHHHH
Confidence 799999999999965
No 20
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=8.5e-57 Score=439.85 Aligned_cols=350 Identities=22% Similarity=0.291 Sum_probs=285.2
Q ss_pred hcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeeccc----CCccchhhhhhcccCCCCCCC
Q 015421 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKPK 98 (407)
Q Consensus 23 ~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~----~g~~~~~~~~~~~~~~~~~~~ 98 (407)
.+.+..++++...++.. .+.++|+||||+|||||++|++++|+..|..+.+.|| +|.|++..+. ..+
T Consensus 84 ~d~~~al~~la~~~~~~-~~~kvIaITGS~GKTTTKe~la~iL~~~~~v~~t~gn~Nn~iGlPltll~~--------~~~ 154 (451)
T COG0770 84 LDTLEALGKLAKAYRQK-FNAKVIAITGSNGKTTTKEMLAAILSTKGKVHATPGNFNNEIGLPLTLLRL--------PAD 154 (451)
T ss_pred HHHHHHHHHHHHHHHHh-cCCcEEEEeCCCCcHHHHHHHHHHHhhcCeEecCCCccCccccchhHHHhC--------CCc
Confidence 33334555555555543 4789999999999999999999999999887777777 6888888765 567
Q ss_pred CcEEEEEecc---cccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeCCChhhHHHHhcc
Q 015421 99 FQVAVVEVSS---YQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH 175 (407)
Q Consensus 99 ~~~~V~E~g~---~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~ 175 (407)
+|++|+|+|. |+++.+..+.+|+++|||||+.+|+++|||.|.|+++|.+|+..+++++.+|+|.|++.....+...
T Consensus 155 ~e~~VlEmG~~~~GeI~~l~~i~~P~iavItnIg~aHle~fgs~e~Ia~aK~Ei~~~~~~~g~ai~n~d~~~~~~~~~~~ 234 (451)
T COG0770 155 TEYAVLEMGMNHPGEIAELSEIARPDIAVITNIGEAHLEGFGSREGIAEAKAEILAGLRPEGIAILNADNPLLKNWAAKI 234 (451)
T ss_pred ccEEEEEcCCCCCCcHHHHhcccCCCEEEEcChhHHHHHhcCCHHHHHHHHHHHHhccCCCcEEEEECccHHHHHHHhhc
Confidence 8999999994 5677777778999999999999999999999999999999999999999999999999977776554
Q ss_pred -ccceEEeecCC--Cccc---ccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHh
Q 015421 176 -RFNLAWIGAFP--GVKI---DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249 (407)
Q Consensus 176 -~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L 249 (407)
..++++|+... ++.. ..+.....|.....+.+. .+.+|++|+||+.|+++|+ ++++.+|+++++|+++|
T Consensus 235 ~~~~v~~fg~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~---~~~l~~~G~hn~~NalaA~--a~a~~lG~~~e~i~~~L 309 (451)
T COG0770 235 GNAKVLSFGLNNGGDFRATNIHLDEEGSSFTLDIEGGEA---EFELPLPGRHNVTNALAAA--ALALELGLDLEEIAAGL 309 (451)
T ss_pred CCCcEEEEcCCCCCceeeEEEEEcCCceEEEEEecCceE---EEEecCCcHhHHHHHHHHH--HHHHHcCCCHHHHHHHH
Confidence 46788888541 1111 111112233332222111 3579999999999999999 99999999999999999
Q ss_pred hcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhcc---CCCcEEEEECCCCCCCCCCCCcchHhhhhhccC--c
Q 015421 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL---KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH--H 324 (407)
Q Consensus 250 ~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~---~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~--~ 324 (407)
+.+.+++||++++. ..++.++|||+||+||+||+++++.+ ++++.++|+|+|.|+|..+.+ .|+++++.+.. .
T Consensus 310 ~~~~~~~gR~~~~~-~~~g~~iIdD~YNAnp~sm~aai~~l~~~~~~~~i~VlGdM~ELG~~s~~-~H~~v~~~~~~~~~ 387 (451)
T COG0770 310 KELKPVKGRLEVIL-LANGKTLIDDSYNANPDSMRAALDLLAALPGRKGIAVLGDMLELGEESEE-LHEEVGEYAVEAGI 387 (451)
T ss_pred HhcCCCCccceeEe-cCCCcEEEEcCCCCCHHHHHHHHHHHhhCccCCcEEEeCChhhhCccHHH-HHHHHHHHHHhcCc
Confidence 99999999999544 47889999999999999999998876 344449999999999977744 78889988764 6
Q ss_pred cEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHHHHhhhcc
Q 015421 325 RCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFFSKH 404 (407)
Q Consensus 325 ~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~~~~~l~~ 404 (407)
|.++++|+..+.+.+.+... ..++.+.++.++.+...+++||+||++ | ||++.++++++.|+.
T Consensus 388 d~v~~~G~~~~~i~~~~~~~-----~~~f~~~~~l~~~l~~~l~~gd~vLvK-g-----------Sr~~~le~vv~~l~~ 450 (451)
T COG0770 388 DLVFLVGELSKAIAEALGNK-----GIYFADKEELITSLKALLRKGDVVLVK-G-----------SRGMKLEKVVDALLG 450 (451)
T ss_pred eEEEEEccchHHHHHhcCCC-----eEecCCHHHHHHHHHHhcCCCCEEEEE-c-----------CccccHHHHHHHHhc
Confidence 89999999888888876432 567788889999999999999999998 4 899999999999975
Q ss_pred c
Q 015421 405 D 405 (407)
Q Consensus 405 ~ 405 (407)
+
T Consensus 451 ~ 451 (451)
T COG0770 451 K 451 (451)
T ss_pred C
Confidence 4
No 21
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.4e-55 Score=422.00 Aligned_cols=357 Identities=20% Similarity=0.276 Sum_probs=289.5
Q ss_pred eeeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCce-e-ecccCCc
Q 015421 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA-F-VGGNLGN 80 (407)
Q Consensus 3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~-~-~~g~~g~ 80 (407)
..||+|++++++|||+++|+++++|+++|+++++.++ +....|+|+||+|||||++||+++|.+.|+++ + .+|.+..
T Consensus 68 ~~VV~s~Ai~~~NpEi~~A~e~~ipi~~r~e~Laelm-~~~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iGG~~~~ 146 (459)
T COG0773 68 DVVVVSNAIKEDNPEIVAALERGIPVISRAEMLAELM-RFRTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIGGILKN 146 (459)
T ss_pred ceEEEecccCCCCHHHHHHHHcCCCeEcHHHHHHHHH-hCCeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEEECccccc
Confidence 3599999999999999999999999999999999998 56889999999999999999999999999875 3 4544433
Q ss_pred cchhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEE
Q 015421 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL 160 (407)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v 160 (407)
.-+... ....++.|+|+++++-.++ .++|+++|+|||..||+|+|++++++.+++..+++.++..|.+|
T Consensus 147 ~g~na~---------~g~~~~fV~EADEsD~sFl--~~~P~~aIvTNid~DH~D~y~~~~~i~~~F~~f~~~vp~~G~~v 215 (459)
T COG0773 147 FGTNAR---------LGSGDYFVAEADESDSSFL--HYNPRVAIVTNIEFDHLDYYGDLEAIKQAFHHFVRNVPFYGRAV 215 (459)
T ss_pred CCcccc---------cCCCceEEEEecccccccc--cCCCCEEEEeCCCcchhhhhCCHHHHHHHHHHHHHhCCccceEE
Confidence 222222 2233789999998775554 37999999999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHhc-cccceEEeecCC--Cccc---ccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHH
Q 015421 161 LPFGNQHLNEAIKG-HRFNLAWIGAFP--GVKI---DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL 234 (407)
Q Consensus 161 ~n~dd~~~~~~~~~-~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~ 234 (407)
+|.|||.++++... .+.++++||.+. ++.. ..+.....|.+...+. .+..+.++++|+||+.|+++|+ ++
T Consensus 216 ~~~dd~~l~~l~~~~~~~~v~tyG~~~~ad~~a~ni~~~~~~~~F~V~~~g~--~~~~~~l~~pG~HNvlNAlaai--a~ 291 (459)
T COG0773 216 VCGDDPNLRELLSRGCWSPVVTYGFDDEADWRAENIRQDGSGTTFDVLFRGE--ELGEVKLPLPGRHNVLNALAAI--AV 291 (459)
T ss_pred EECCCHHHHHHHhcccCCcEEeecCCCcCcEEEEEeEEeccccEEEEEEcCc--eeEEEEEcCCchhhHHHHHHHH--HH
Confidence 99999999997765 567789999875 3322 2223333344443443 3445689999999999999999 99
Q ss_pred HHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhcc----C-CCcEEEEECCCCCCCCCC
Q 015421 235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL----K-GHKCVILLGGQAKVLNGQ 309 (407)
Q Consensus 235 ~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~----~-~~~~i~V~g~~~~~~~~~ 309 (407)
|+.+|++.+.|.++|++|+++.+|||+.. ..+++++|||| +|.|..+.++|+.+ + ++|+++||.+.....
T Consensus 292 a~~~Gi~~~~i~~aL~~F~GvkRRfe~~g-~~~~~~viDDY-aHHPtEI~aTL~aaR~~~~~~~rIvaifQPHrySR--- 366 (459)
T COG0773 292 ARELGIDPEAIAEALASFQGVKRRFELKG-EVNGVTVIDDY-AHHPTEIKATLAAARQKVPGGKRIVAVFQPHRYSR--- 366 (459)
T ss_pred HHHcCCCHHHHHHHHHhCCCcceeeEEee-eECCEEEEecC-CCCHHHHHHHHHHHHHhcCCCceEEEEECCCchHh---
Confidence 99999999999999999999999999887 47889999995 99999999988766 3 378999998875432
Q ss_pred CCcchHhhhhhccCccEEEEe-----CCC-------hHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcC
Q 015421 310 ESNGFEKLIEPLNHHRCVITF-----GYS-------GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377 (407)
Q Consensus 310 ~~~~~~~~~~~l~~~~~v~~~-----g~~-------~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~ 377 (407)
....++++++.+..+|.|++. |+. ...+.+.+++.+ .+. +++.++..+.+.+.+++||+||+.
T Consensus 367 t~~~~~dF~~~l~~AD~v~l~~VY~A~e~~~~g~~~~~~l~~~i~~~~---~~~-~~~~~~~~~~l~~~~~~gD~il~m- 441 (459)
T COG0773 367 TRDLLDDFAKALSDADEVILLDVYAAGEEPIEGDVSSEDLAEKIRQPG---HVD-VPDLDDLVELLAKVAQPGDVILFM- 441 (459)
T ss_pred HHHHHHHHHHHHhcCCEEEEecccccCCCCCcCCccHHHHHHHhhcCC---ccc-CCCHHHHHHHHHhhCCCCCEEEEe-
Confidence 334788899998778999887 233 345666665543 222 689999999999999999999885
Q ss_pred CCCCcccc
Q 015421 378 GCASFDEF 385 (407)
Q Consensus 378 G~~s~~~~ 385 (407)
|+|++..+
T Consensus 442 GAGdi~~~ 449 (459)
T COG0773 442 GAGDIGKI 449 (459)
T ss_pred cCCcHHHH
Confidence 89988654
No 22
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.4e-55 Score=436.99 Aligned_cols=351 Identities=28% Similarity=0.456 Sum_probs=277.6
Q ss_pred eeeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhC-CCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCcc
Q 015421 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81 (407)
Q Consensus 3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~-~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~ 81 (407)
-+||.++.++++||.++.|+++|++++++.+++.+.. ..+.++|+||||||||||++||+++|+..|.++++.||+|.|
T Consensus 61 dlvV~s~gi~~~~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~~~~~GniG~p 140 (418)
T PRK00683 61 DLVVRSPGIKKEHPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGIPAFAMGNIGIP 140 (418)
T ss_pred CEEEECCCCCCCcHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCCCeEEECCcCHH
Confidence 4789999999999999999999999999999866542 125689999999999999999999999999988999999999
Q ss_pred chhhhhhcccCCCCCCCCcEEEEEecccccccCCc-cccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEE
Q 015421 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL 160 (407)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~-~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v 160 (407)
+... ..+.+++|+|+|++++..... ...|+++|||||++||+++|+|+|+|+++|.+++..+.+
T Consensus 141 ~l~~----------~~~~~~~V~E~~s~~~~~~~~~~~~~~iavitNi~~dHld~~~s~e~y~~aK~~i~~~~~~----- 205 (418)
T PRK00683 141 ILDG----------MQQPGVRVVEISSFQLADQEKSYPVLSGGMILNISDNHLDYHGNLSAYFQAKQNIAKCLRN----- 205 (418)
T ss_pred HHHH----------hhcCCEEEEEechhhhCcCcccCCCccEEEEecCChhHhccCCCHHHHHHHHHHHHHhhhC-----
Confidence 7432 123578999999987765433 234599999999999999999999999999999985432
Q ss_pred EeCCChhhHHHHhccccceEEeecCCCcccccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHH-cC
Q 015421 161 LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD-IG 239 (407)
Q Consensus 161 ~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~-lg 239 (407)
.|+.... ...+++.+ .. ......... .. .+ ..++++|.||++|+++|+ +++.. +|
T Consensus 206 --~~~~~~~--------~~~~~~~~--~~-~~~~~~~~~-~~-~~-------~~~~~~g~hn~~Na~aA~--a~~~~l~g 261 (418)
T PRK00683 206 --PDDLWVG--------DERSYGHS--YL-EYVQEIMRL-LD-KG-------SALKPLYLHDRYNYCAAY--ALANEVFP 261 (418)
T ss_pred --ccccccc--------ccCCcCce--ee-cCcchhhhh-hc-cc-------cccCCCccchHHHHHHHH--HHHHHhcC
Confidence 2222110 00112210 00 000000000 00 01 246789999999999999 78888 69
Q ss_pred CCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccCCCcEEEEECCCCCCCCCCCCcchHhhhh
Q 015421 240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIE 319 (407)
Q Consensus 240 i~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~ 319 (407)
++.++|.++|++|++++||||++. ..++..+|||+||+||+|+.++++.+. +|+++|+|+|.+.++ +.++++
T Consensus 262 ~~~~~i~~~l~~~~~~~~R~e~v~-~~~g~~~i~Ds~~t~~~s~~~al~~~~-~~~i~vlG~~~~~~d------~~~l~~ 333 (418)
T PRK00683 262 ISEESFLEAVATFEKPPHRMEYLG-EKDGVHYINDSKATTVSAVEKALLAVG-NQVIVILGGRNKGCD------FSSLLP 333 (418)
T ss_pred CCHHHHHHHHHhCCCCCCceEEEe-ecCCeEEEEcCCCCCHHHHHHHHHhCC-CCEEEEEcCCCCCCC------HHHHHH
Confidence 999999999999999999999996 357899999999999999999999864 578999998766544 335666
Q ss_pred hccC-ccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHHH
Q 015421 320 PLNH-HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 398 (407)
Q Consensus 320 ~l~~-~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~~ 398 (407)
.+.+ .+.++++|++...+.+.+... . .+..++++++|++.+.+.+++||+||+.|||+||++|++|+.||..|.++
T Consensus 334 ~~~~~~~~v~~~G~~~~~i~~~l~~~-~--~~~~~~~~~~a~~~~~~~~~~gd~VLlsp~~~s~d~f~~~~~RG~~F~~~ 410 (418)
T PRK00683 334 VLRQTAKHVVAMGECRQEIAQALSEK-F--PLTVVKDLQEAVSCAQEIAQPGDVILLSPGCASFDQFRSFEERGAMFKQL 410 (418)
T ss_pred HHHHhCCEEEEECCCHHHHHHHHhcC-C--CEEEeCCHHHHHHHHHHhCCCCCEEEECchhcccccccCHHHHHHHHHHH
Confidence 5543 688999999988888877542 1 34567899999999999999999999999999999999999999999999
Q ss_pred Hhhhc
Q 015421 399 AFFSK 403 (407)
Q Consensus 399 ~~~l~ 403 (407)
|+.++
T Consensus 411 v~~~~ 415 (418)
T PRK00683 411 VGMME 415 (418)
T ss_pred HHHHh
Confidence 99775
No 23
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.
Probab=100.00 E-value=9e-56 Score=438.42 Aligned_cols=328 Identities=22% Similarity=0.291 Sum_probs=259.0
Q ss_pred CCcEEEEecCCChHhHHHHHHHHHHhcCCceeeccc----CCccchhhhhhcccCCCCCCCCcEEEEEec-ccccc--cC
Q 015421 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVS-SYQME--IP 114 (407)
Q Consensus 42 ~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~----~g~~~~~~~~~~~~~~~~~~~~~~~V~E~g-~~~l~--~~ 114 (407)
+.++|+||||||||||++||+++|+..|..+.+.|| +|.|.+... ...+++++|+|+| ++..+ ..
T Consensus 73 ~~~vI~VTGTnGKTTt~~ll~~iL~~~g~~~~t~gn~n~~ig~p~~~l~--------~~~~~~~~VlE~g~s~~g~~~~~ 144 (417)
T TIGR01143 73 SGKVIGITGSSGKTTTKEMLAAILSHKYKVFATPGNFNNEIGLPLTLLR--------APGDHDYAVLEMGASHPGEIAYL 144 (417)
T ss_pred CCCEEEEcCCCchhHHHHHHHHHHhccCcEecCCCcCCCccchhHHHhc--------CCCCCeEEEEEeCCCCCCcHHHH
Confidence 468999999999999999999999999987677777 566665432 2567899999998 44333 23
Q ss_pred CccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeCCChhhHHHHhccc-cceEEeecCC-Ccccc-
Q 015421 115 NKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR-FNLAWIGAFP-GVKID- 191 (407)
Q Consensus 115 ~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~-~~~~~~~~~~-~~~~~- 191 (407)
...++|+++|||||++||+++|+|+|+|+++|.++++.+++++.+|+|.|||....+..... .++++|+... ++...
T Consensus 145 ~~~~~p~vaviTNi~~dHld~~gs~e~~~~aK~~l~~~~~~~~~~vln~Dd~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (417)
T TIGR01143 145 AEIAKPDIAVITNIGPAHLEGFGSLEGIAEAKGEILQGLKENGIAVINADDPAFAKFAKRLPNKAILSFGFEGGDFSAAD 224 (417)
T ss_pred hCccCCCEEEEcCCcHHHhhhcCCHHHHHHHHHHHHcccCCCCEEEEeCCcHHHHHHHHhccCCcEEEECCCCCcEEEEE
Confidence 33479999999999999999999999999999999998888899999999998877765433 4567777532 11110
Q ss_pred --ccccc-ceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCC
Q 015421 192 --TEAKT-ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQG 268 (407)
Q Consensus 192 --~~~~~-~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~ 268 (407)
..... ..|.+...+... .+.++++|.||++|+++|+ +++..+|++++.|.++|++|++++||||+. ..++
T Consensus 225 i~~~~~~~~~~~~~~~~~~~---~~~~~l~G~hn~~N~laAi--a~~~~lGi~~~~i~~~l~~~~~~~gR~e~~--~~~~ 297 (417)
T TIGR01143 225 ISYSALGSTGFTLVAPGGEF---EVSLPLLGRHNVMNALAAA--ALALELGIPLEEIAEGLAELKLVKGRFEIQ--TKNG 297 (417)
T ss_pred EEEcCCCCEEEEEEeCCceE---EEEccCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCCceeEE--cCCC
Confidence 00001 122222111111 2468999999999999999 899999999999999999999999999943 3678
Q ss_pred EEEEEcCCCCCHHHHHHHHhccCC--CcEEEEECCCCCCCCCCCCcchHhhhhhccC--ccEEEEeCCChHHHHHHHHhC
Q 015421 269 VTWVDDSKATNLEATCTGLMDLKG--HKCVILLGGQAKVLNGQESNGFEKLIEPLNH--HRCVITFGYSGVLIWKTLVNN 344 (407)
Q Consensus 269 ~~iidD~~a~np~s~~~al~~~~~--~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~--~~~v~~~g~~~~~~~~~l~~~ 344 (407)
..+|||+|||||+|++++|+.+.. +|+++|+|+|.+.|+++. ..|.++++.+.. .|.++++|+++..+.+.+..
T Consensus 298 ~~vidDsya~np~s~~~al~~l~~~~~r~i~VlG~~~e~G~~~~-~~~~~l~~~~~~~~~d~vi~~g~~~~~~~~~~~~- 375 (417)
T TIGR01143 298 LTLIDDTYNANPDSMRAALDALARFPGKKILVLGDMAELGEYSE-ELHAEVGRYANSLGIDLVFLVGEEAAVIYDSLGC- 375 (417)
T ss_pred cEEEEcCCCCCHHHHHHHHHHHHhCCCCEEEEEcCchhcChHHH-HHHHHHHHHHHHcCCCEEEEECHHHHHHHHhccc-
Confidence 999999999999999999998853 589999999999888774 357778877743 49999999998777765421
Q ss_pred CCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHHHHhhh
Q 015421 345 GLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFFS 402 (407)
Q Consensus 345 ~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~~~~~l 402 (407)
...++++.+++.+.+.+.+++||+||++ | ||++.||++++.|
T Consensus 376 ----~~~~~~~~~~~~~~l~~~~~~~d~VLlk-G-----------Sr~~~le~~~~~~ 417 (417)
T TIGR01143 376 ----KGFHFADKDELLAFLKLELGEGDVVLVK-G-----------SRSVKLEKVVEAL 417 (417)
T ss_pred ----CcEEECCHHHHHHHHHHhcCCCCEEEEE-e-----------CCcCcHHHHHhhC
Confidence 2345688999999999989999999997 4 7999999999865
No 24
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=2.6e-55 Score=441.42 Aligned_cols=336 Identities=18% Similarity=0.172 Sum_probs=262.5
Q ss_pred CCCcEEEEecCCChHhHHHHHHHHHHhcCCceeeccc----CCccchhhhhhcccCCCCCCCCcEEEEEec-ccccc--c
Q 015421 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVS-SYQME--I 113 (407)
Q Consensus 41 ~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~----~g~~~~~~~~~~~~~~~~~~~~~~~V~E~g-~~~l~--~ 113 (407)
.+.++|+||||||||||++||+++|+..|.++.+.|+ +|.|.+...+ ..+++++|+|+| ++..+ .
T Consensus 106 ~~~~vIgVTGS~GKTTT~~ml~~iL~~~g~~~~~~g~~n~~iG~p~~l~~~--------~~~~~~~V~E~g~s~~~e~~~ 177 (479)
T PRK14093 106 LEAKVIAVTGSVGKTSTKEALRGVLGAQGETHASVASFNNHWGVPLSLARC--------PADARFAVFEIGMNHAGEIEP 177 (479)
T ss_pred cCCCEEEEcCCCCccHHHHHHHHHHHhcCCccCCCccCCCccchhHHHHcC--------CCCCcEEEEEeCCCCCchHHH
Confidence 4678999999999999999999999999987766665 4555543322 356789999999 44433 3
Q ss_pred CCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeCCChhhHHHHhccc----cceEEeecCCCcc
Q 015421 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR----FNLAWIGAFPGVK 189 (407)
Q Consensus 114 ~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~----~~~~~~~~~~~~~ 189 (407)
....++|+++|||||++||+++|+|+|+|+++|.++++.+++++.+|+|.|||....+..... .++++|+......
T Consensus 178 ~~~~~~PdiaViTNI~~DHLd~~gt~e~~~~aK~~l~~~~~~~g~~VlN~Dd~~~~~l~~~~~~~~~~~vi~~g~~~~~~ 257 (479)
T PRK14093 178 LVKMVRPHVAIITTVEPVHLEFFSGIEAIADAKAEIFTGLEPGGAAVLNRDNPQFDRLAASARAAGIARIVSFGADEKAD 257 (479)
T ss_pred HhcccCCCEEEEcCCCHHHHhhcCCHHHHHHHHHHHHccCCCCCEEEEeCCcHHHHHHHHHhhhccCCcEEEEeCCCCcc
Confidence 344589999999999999999999999999999999998888899999999998877654321 2577887542211
Q ss_pred c--cc---ccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEee
Q 015421 190 I--DT---EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264 (407)
Q Consensus 190 ~--~~---~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~ 264 (407)
+ .. ......+.+...+.. ..+.++++|.||++|+++|+ +++..+|+++++|.++|++|++++||++.+..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~l~~~~~~~gR~~~~r~ 332 (479)
T PRK14093 258 ARLLDVALHADCSAVHADILGHD---VTYKLGMPGRHIAMNSLAVL--AAAELAGADLALAALALSQVQPAAGRGVRHTL 332 (479)
T ss_pred EEEEEEEEcCCceEEEEEECCce---EEEEecCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCcCCcceEEEe
Confidence 1 10 001112222211111 13578999999999999999 89999999999999999999999999998642
Q ss_pred e--cCCEEEEEcCCCCCHHHHHHHHhccC------CCcEEEEECCCCCCCCCCCCcchHhhhhhcc--CccEEEEeCCCh
Q 015421 265 D--IQGVTWVDDSKATNLEATCTGLMDLK------GHKCVILLGGQAKVLNGQESNGFEKLIEPLN--HHRCVITFGYSG 334 (407)
Q Consensus 265 ~--~~~~~iidD~~a~np~s~~~al~~~~------~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~--~~~~v~~~g~~~ 334 (407)
. .++.+||||+|||||+||+++|+.+. ++|+|+|||+|.|+|..+. ..|+++++.+. ..|.|+++|+..
T Consensus 333 ~~~~~~~~iIDDsYahnP~s~~aaL~~l~~~~~~~~~r~i~V~G~m~elg~~~~-~~h~~~~~~~~~~~~d~v~~~G~~~ 411 (479)
T PRK14093 333 EVGGGEATLIDESYNANPASMAAALGVLGRAPVGPQGRRIAVLGDMLELGPRGP-ELHRGLAEAIRANAIDLVFCCGPLM 411 (479)
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHHHHhhhccCCCCEEEEECChHHcCcHHH-HHHHHHHHHHHHcCCCEEEEEchhH
Confidence 1 34589999999999999999998763 3589999999999998764 47889999886 479999999877
Q ss_pred HHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHHHHhhhccc
Q 015421 335 VLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFFSKHD 405 (407)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~~~~~l~~~ 405 (407)
..+.+.+... ....++++.+++.+++...+++||+||++ | ||++.||++++.|+++
T Consensus 412 ~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~gd~vL~k-G-----------Sr~~~le~i~~~l~~~ 467 (479)
T PRK14093 412 RNLWDALSSG---KRGGYAEDAAALESQVVAAIRAGDVIMVK-G-----------SLGSRMKTIVTALEKR 467 (479)
T ss_pred HHHHHhhccc---ccceeeCCHHHHHHHHHHhcCCCCEEEEE-c-----------CCcCCHHHHHHHHHhh
Confidence 7776654321 11135689999999999999999999997 4 8999999999999764
No 25
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=100.00 E-value=3.3e-54 Score=431.05 Aligned_cols=360 Identities=19% Similarity=0.290 Sum_probs=279.5
Q ss_pred eeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCC--ceeecccCCcc
Q 015421 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI--EAFVGGNLGNP 81 (407)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~--~~~~~g~~g~~ 81 (407)
+||+||+++++||++++|++.++|++++++++++.. ++.++|+||||||||||++||+++|+..|. .+..+|+++.+
T Consensus 61 ~vV~spgi~~~~p~~~~a~~~~i~v~~~~el~~~~~-~~~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg~~~~~ 139 (448)
T TIGR01082 61 VVVVSAAIKDDNPEIVEAKERGIPVIRRAEMLAELM-RFRHSIAVAGTHGKTTTTAMIAVILKEAGLDPTVVVGGLVKEA 139 (448)
T ss_pred EEEECCCCCCCCHHHHHHHHcCCceEeHHHHHHHHH-hcCcEEEEECCCChHHHHHHHHHHHHHcCCCCeEEECcccccC
Confidence 699999999999999999999999999999999887 356899999999999999999999999997 45678888887
Q ss_pred chhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhc-cCCCHHHHHHHHHHhhcccCCCceEE
Q 015421 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLE-RHKTMKNYALTKCHLFSHMVNTKLGL 160 (407)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~-~~~t~e~i~~~K~~i~~~~~~~~~~v 160 (407)
...... ...+++|+|+|++++.. ..++|+++|||||++||++ +|+|+|+|+++|.++++.+++++.+|
T Consensus 140 ~~~~~~---------~~~~~~V~E~s~~q~~~--~~~~p~vaVitNI~~DHld~~~~s~e~y~~aK~~i~~~~~~~~~~V 208 (448)
T TIGR01082 140 GTNARL---------GSGEYLVAEADESDASF--LHLQPNVAIVTNIEPDHLDTYGSSFERLKAAFEKFIHNLPFYGLAV 208 (448)
T ss_pred Cccccc---------CCCCEEEEECCCccchH--hhccCCEEEEecCChhhcchhcCCHHHHHHHHHHHHHhCCCCCEEE
Confidence 654321 23578999999887654 3489999999999999999 88999999999999999887889999
Q ss_pred EeCCChhhHHHHhccccceEEeecCC-C--cccc---cccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHH
Q 015421 161 LPFGNQHLNEAIKGHRFNLAWIGAFP-G--VKID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL 234 (407)
Q Consensus 161 ~n~dd~~~~~~~~~~~~~~~~~~~~~-~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~ 234 (407)
+|.||+....+......++++|+... . +... .......|.+...+. ......++++|.||++|+++|+ ++
T Consensus 209 ~n~dd~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~G~hn~~N~~aA~--a~ 284 (448)
T TIGR01082 209 ICADDPVLRELVPKATEQVITYGGSGEDADYRAENIQQSGAEGKFSVRGKGK--LYLEFTLNLPGRHNVLNALAAI--AV 284 (448)
T ss_pred EECCCHHHHHHHhhcCCCEEEeCCCCCCCcEEEEEEEecCCeEEEEEEECCc--eEEEEEecCccHhHHHHHHHHH--HH
Confidence 99999998877654445667776531 1 1110 000011122211111 1123468899999999999999 88
Q ss_pred HHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC----CCcEEEEECCCCCCCCCCC
Q 015421 235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQE 310 (407)
Q Consensus 235 ~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~g~~~~~~~~~~ 310 (407)
+..+|++.+.|.++|++|++++||||++. ..+++.+||| |||||.++.++++.+. .+|+++|+|+......
T Consensus 285 ~~~lgi~~~~i~~~l~~f~~~~~R~e~~~-~~~gv~~i~D-~ahn~~~~~a~~~al~~~~~~~~ii~i~g~~~~~r~--- 359 (448)
T TIGR01082 285 ALELGIDFEAILRALANFQGVKRRFEILG-EFGGVLLIDD-YAHHPTEIKATLKAARQGYPDKRIVVVFQPHRYSRT--- 359 (448)
T ss_pred HHHcCCCHHHHHHHHHhCCCCCccceEEE-EeCCeEEEEc-CCCCHHHHHHHHHHHHHhcCCCeEEEEECCCCCccH---
Confidence 89999999999999999999999999986 3577899999 4999999998877763 3478899985221110
Q ss_pred CcchHhhhhhccCccEEEEe-----------CCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCC
Q 015421 311 SNGFEKLIEPLNHHRCVITF-----------GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 379 (407)
Q Consensus 311 ~~~~~~~~~~l~~~~~v~~~-----------g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~ 379 (407)
+..++++.+.+...|.++++ |...+.+.+.+.+.+. ..+..++++++|++.+.+.+++||+||+. |+
T Consensus 360 k~~~~~~~~~l~~~d~v~l~~~~~~~~~~~~g~~~~~i~~~~~~~~~-~~~~~~~~~~~a~~~a~~~a~~gD~VLl~-G~ 437 (448)
T TIGR01082 360 RDLFDDFAKVLSDADELILLDIYAAGEEPINGIDGKSLARKITQLGK-IEPYFVPDLAELVEFLAAVLQSGDLILTM-GA 437 (448)
T ss_pred HHHHHHHHHHHHhCCEEEEecccCCCCCCCCCCCHHHHHHHHhhcCC-CceEEeCCHHHHHHHHHHhcCCCCEEEEE-CC
Confidence 11345677766557777776 5566778887765321 23456789999999999999999999885 88
Q ss_pred CCccccc
Q 015421 380 ASFDEFR 386 (407)
Q Consensus 380 ~s~~~~~ 386 (407)
|++..+.
T Consensus 438 g~~~~~~ 444 (448)
T TIGR01082 438 GDIIKLA 444 (448)
T ss_pred CCHHHHH
Confidence 9887653
No 26
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=100.00 E-value=4.2e-54 Score=431.77 Aligned_cols=360 Identities=18% Similarity=0.243 Sum_probs=274.2
Q ss_pred eeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCc--eeecccCCcc
Q 015421 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLGNP 81 (407)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~--~~~~g~~g~~ 81 (407)
+||.||+++++||++++|++.++|++++++++++.. ++.++|+||||||||||++|++++|+..|+. +..+|+++.+
T Consensus 69 ~vv~spgi~~~~~~~~~a~~~~i~i~~~~e~~~~~~-~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg~~~~~ 147 (461)
T PRK00421 69 VVVYSSAIPDDNPELVAARELGIPVVRRAEMLAELM-RFRTSIAVAGTHGKTTTTSLLAHVLAEAGLDPTFLIGGILNAA 147 (461)
T ss_pred EEEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHHH-ccCcEEEEECCCCHHHHHHHHHHHHHhcCCCCeEEECceeccC
Confidence 799999999999999999999999999999999876 3458999999999999999999999999964 4566765443
Q ss_pred chhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEE
Q 015421 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161 (407)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~ 161 (407)
..... ..+.+++|+|+|+++... ..++|+++|||||++||+++|+|+|+|+++|.+++..+++++.+|+
T Consensus 148 ~~~~~---------~~~~~~~V~E~ss~q~~~--~~~~p~vaViTNI~~DHld~~gt~e~y~~ak~k~~~~~~~~~~~V~ 216 (461)
T PRK00421 148 GTNAR---------LGNSDYFVAEADESDRSF--LKLHPDIAIVTNIDADHLDYYGDFEDLKDAFQEFAHNLPFYGALVA 216 (461)
T ss_pred Ccccc---------cCCCCEEEEECCCccchH--hhcCCCEEEEccCChhhccccCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 22111 234688999999886533 2479999999999999999999999999999999988877889999
Q ss_pred eCCChhhHHHHhccccceEEeecCC--Cccccc---ccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHH
Q 015421 162 PFGNQHLNEAIKGHRFNLAWIGAFP--GVKIDT---EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGL 236 (407)
Q Consensus 162 n~dd~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~ 236 (407)
|.||+.+..+......++++|+... ++.... ......|.+...+. .+....++++|.||++|+++|+ +++.
T Consensus 217 n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~l~l~G~h~~~N~~aA~--a~~~ 292 (461)
T PRK00421 217 CGDDPELRELLPRVSRPVITYGFSEDADFRAENIRQDGGGTHFDVLRRGE--VLGDFTLPLPGRHNVLNALAAI--AVAL 292 (461)
T ss_pred ECCCHHHHHHHHhcCCCEEEecCCCCCcEEEEEEEEcCCceEEEEEECCc--eEEEEEecCCcHHHHHHHHHHH--HHHH
Confidence 9999988887765556777777532 111110 00111222211111 1113468899999999999999 8899
Q ss_pred HcCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC----CCcEEEEECCCCCCCCCCCCc
Q 015421 237 DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQESN 312 (407)
Q Consensus 237 ~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~g~~~~~~~~~~~~ 312 (407)
.+|++++.|.++|++|++++||||++. ..+++.+|+|+ +|||+++.++++.+. ++|+++|+|......+ +.
T Consensus 293 ~lgv~~~~i~~~l~~f~~~~~R~e~~~-~~~g~~~i~D~-aHnp~~~~a~~~al~~~~~~~~i~~v~gp~~~~r~---kd 367 (461)
T PRK00421 293 ELGIDDEAIREALATFKGVKRRFEEKG-EVGGVVLIDDY-AHHPTEIKATLKAARQGYPDKRIVAVFQPHRYSRT---RD 367 (461)
T ss_pred HcCCCHHHHHHHHHhCCCCCcccEEEE-ecCCcEEEEeC-CCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCccH---HH
Confidence 999999999999999999999999996 35678899995 999999999887763 2678899983321111 11
Q ss_pred chHhhhhhccCccEEEEe-----------CCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCC
Q 015421 313 GFEKLIEPLNHHRCVITF-----------GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 381 (407)
Q Consensus 313 ~~~~~~~~l~~~~~v~~~-----------g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s 381 (407)
....++..+...|.++++ +.+++.+.+.++..+ ..+..++++++|++.+.+.+++||+||++ |+|+
T Consensus 368 ~~~~~~~~l~~~d~vi~~~~~~~~e~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~a~~~a~~~a~~gD~vlv~-G~g~ 444 (461)
T PRK00421 368 LLDEFAEALSDADEVILLDIYAAGEEPIGGVDSEDLARKIKRGH--RDPIFVPDLEDLAELLAEVLKPGDLVLTM-GAGD 444 (461)
T ss_pred HHHHHHHHHHHCCEEEEcCccCCCCCCCCCCCHHHHHHHHhccC--CceEEeCCHHHHHHHHHHhcCCCCEEEEE-CCCC
Confidence 233466655446777775 334567777775422 24556789999999999999999999885 8888
Q ss_pred cccccC
Q 015421 382 FDEFRN 387 (407)
Q Consensus 382 ~~~~~~ 387 (407)
|+.+..
T Consensus 445 ~~~~~~ 450 (461)
T PRK00421 445 ITKLAR 450 (461)
T ss_pred HHHHHH
Confidence 876554
No 27
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=100.00 E-value=2.4e-53 Score=424.78 Aligned_cols=360 Identities=20% Similarity=0.241 Sum_probs=267.0
Q ss_pred eeeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCce-----eeccc
Q 015421 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA-----FVGGN 77 (407)
Q Consensus 3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~-----~~~g~ 77 (407)
-+||+||+++++||++++|++.++|++++++++++...+..++|+||||||||||++||+++|+..|.++ .+.||
T Consensus 62 d~vV~SpgI~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~~~~~~gn 141 (448)
T TIGR01081 62 DLVVIGNAMKRGNPCVEAVLNLNLPYTSGPQWLHDFVLHDRWVLAVAGTHGKTTTASMLAWVLEQCGLKPGFLIGGVPGN 141 (448)
T ss_pred CEEEECCCCCCCCHHHHHHHHCCCCEEeHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCCcEEeCccccc
Confidence 3799999999999999999999999999999988753123449999999999999999999999999875 35788
Q ss_pred CCccchhhhhhcccCCCCCCCCcEEEEEeccccccc---CCc--cccceEEEEecCChhhhccCCCHHHHHHHHHHhhcc
Q 015421 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI---PNK--YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH 152 (407)
Q Consensus 78 ~g~~~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~---~~~--~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~ 152 (407)
+|.|.. + .+.+++|+|+|++++.. +.. .++|+++|||||++||+++|+|+|+|+++|.++++.
T Consensus 142 ~G~~~~---~---------~~~~~~V~E~~s~~~~~~~~l~~~~~~~P~iaVITNI~~DHld~~~t~e~~~~~K~~i~~~ 209 (448)
T TIGR01081 142 FGVSAR---L---------GESPFFVIEADEYDTAFFDKRSKFVHYRPRTLVLNNLEFDHADIFDDLKAIQRQFHHLVRT 209 (448)
T ss_pred Cccccc---c---------CCCCEEEEEccCcCccccccccceeecCCCEEEEeCCChHhccccCCHHHHHHHHHHHHHh
Confidence 888863 1 13578999999876543 222 268999999999999999999999999999999998
Q ss_pred cCCCceEEEeCCChhhHHHHhc-cccceEEeecCCCccccc-ccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHH
Q 015421 153 MVNTKLGLLPFGNQHLNEAIKG-HRFNLAWIGAFPGVKIDT-EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAA 230 (407)
Q Consensus 153 ~~~~~~~v~n~dd~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~ 230 (407)
+++.+.+|+|.||+.+..+... ...++.+|+...++.... ......+.+...+.. ...+.++++|.||++|+++|+
T Consensus 210 ~~~~~~~i~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~l~G~hn~~Na~~A~ 287 (448)
T TIGR01081 210 VPGEGLILCPGRDQSLKDTLAKGCWSEQEFFGEQGEWQAEKITADGSHFDVLLDGEK--VGEVKWSLVGRHNMHNALMAI 287 (448)
T ss_pred CCCCCEEEEeCCCHHHHHHHHhccCCCeEEECCCCCEEEEEEecCCcEEEEEECCce--eEEEEecCCcHHHHHHHHHHH
Confidence 7777899999999988765432 223455554322111100 001112222111111 112357899999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccCC----CcEEEEECCCCCCC
Q 015421 231 LSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG----HKCVILLGGQAKVL 306 (407)
Q Consensus 231 ~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~----~~~i~V~g~~~~~~ 306 (407)
+++..+|++.+.+.++|++|.+++||||++. ..++..+|+|+ ||||+|++++++.++. +|+++|+|++.+..
T Consensus 288 --a~~~~lgi~~~~i~~~L~~~~~~~~R~e~~~-~~~g~~ii~D~-ahNp~s~~~~l~~l~~~~~~~~ii~I~g~~~~~~ 363 (448)
T TIGR01081 288 --AAARHVGVAIEDACEALGSFVNAKRRLELKG-EANGITVYDDF-AHHPTAIEATLQGLRQKVGGARILAVLEPRSNTM 363 (448)
T ss_pred --HHHHHcCCCHHHHHHHHHhCCCCCcceEEEE-ecCCeEEEEeC-CCCHHHHHHHHHHHHHhcCCCeEEEEECCCcchh
Confidence 8889999999999999999999999999985 34678999997 9999999999998852 36789999663211
Q ss_pred CCCCCcchHhhhhhccCccEEEEeCCCh--HHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCccc
Q 015421 307 NGQESNGFEKLIEPLNHHRCVITFGYSG--VLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDE 384 (407)
Q Consensus 307 ~~~~~~~~~~~~~~l~~~~~v~~~g~~~--~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~ 384 (407)
.. ....+++...+...|.++++|... ..+.+.+...+ ..+..+++++++++.+.+.+++||+||+. |+|+++.
T Consensus 364 ~l--g~~~~~l~~~~~~~d~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~a~~gd~VLv~-gag~~~~ 438 (448)
T TIGR01081 364 KL--GVHKDDLAPSLGRADQVFLYQPGQIPWDVAEVAAQCV--QPANVSADFDAFVAMIVKNAQPGDHILVM-SNGGFGG 438 (448)
T ss_pred hh--hhHHHHHHHHHHhCCEEEEcCCCCCccCHHHHHHhcC--CCeEEcCCHHHHHHHHHHhCCCCCEEEEE-CCCCHHH
Confidence 00 012333444444478888886542 22444443321 13456689999999999999999999885 8897765
Q ss_pred c
Q 015421 385 F 385 (407)
Q Consensus 385 ~ 385 (407)
+
T Consensus 439 ~ 439 (448)
T TIGR01081 439 I 439 (448)
T ss_pred H
Confidence 4
No 28
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=1.5e-51 Score=446.82 Aligned_cols=331 Identities=19% Similarity=0.228 Sum_probs=260.9
Q ss_pred CCcEEEEecCCChHhHHHHHHHHHHhc---CCceeeccc----CCccchhhhhhcccCCCCCCCCcEEEEEeccc---cc
Q 015421 42 SIKILAVTGTNGKSTVVTFVGQMLNHL---GIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY---QM 111 (407)
Q Consensus 42 ~~~~I~VTGTnGKTTt~~~l~~iL~~~---g~~~~~~g~----~g~~~~~~~~~~~~~~~~~~~~~~~V~E~g~~---~l 111 (407)
+.++|+||||||||||++||+++|+.. +..+.+.|| +|.|++.... ..+.+++|+|+|++ ++
T Consensus 602 ~~~vI~VTGTnGKTTT~~ml~~iL~~~~~~~~~~~t~gn~n~~~g~~~~l~~~--------~~~~~~~VlE~s~~~~g~~ 673 (958)
T PRK11929 602 SLPVVAITGSNGKTTTKEMIAAILAAWQGEDRVLATEGNFNNEIGVPLTLLRL--------RAQHRAAVFELGMNHPGEI 673 (958)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHHhcCCCCcEEccCcccCCCcchHHHHhcC--------CCCCcEEEEEeCCCCCccH
Confidence 568999999999999999999999998 444566777 5666554322 45678999999964 55
Q ss_pred ccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeCCChhhHHHHhcc-ccceEEeecCCCccc
Q 015421 112 EIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH-RFNLAWIGAFPGVKI 190 (407)
Q Consensus 112 ~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~-~~~~~~~~~~~~~~~ 190 (407)
+.+..+++|+++|||||++||+++|+|+|+|+++|.++++.+++++.+|+|.||+....+.... ..++++|+......+
T Consensus 674 ~~~~~~~~pdiaViTNI~~dHLd~~~s~e~y~~aK~~i~~~~~~~~~~Vln~Dd~~~~~~~~~~~~~~~~~fg~~~~~~~ 753 (958)
T PRK11929 674 AYLAAIAAPTVALVTNAQREHQEFMHSVEAVARAKGEIIAALPEDGVAVVNGDDPYTAIWAKLAGARRVLRFGLQPGADV 753 (958)
T ss_pred HHHhCccCCCEEEEcCCcHHHhhhcCCHHHHHHHHHHHHccCCCCCEEEEECCcHHHHHHHHhhcCCcEEEEeCCCCcce
Confidence 5554557999999999999999999999999999999999888889999999999887765433 234677775321111
Q ss_pred ccc----------cccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCcee
Q 015421 191 DTE----------AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260 (407)
Q Consensus 191 ~~~----------~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e 260 (407)
... .....+.+...+.. ..+.++++|.||++|+++|+ +++..+|++++.|.++|++|++++||||
T Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~L~~f~~~~gR~e 828 (958)
T PRK11929 754 YAEKIAKDISVGEAGGTRCQVVTPAGS---AEVYLPLIGEHNLRNALAAI--ACALAAGASLKQIRAGLERFQPVAGRMQ 828 (958)
T ss_pred EeeecccceeecCCCceEEEEEECCce---EEEEeCCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHhhCCCCCCCce
Confidence 000 00111221111101 12468999999999999999 8999999999999999999999999999
Q ss_pred EEeeecCCEEEEEcCCCCCHHHHHHHHhccCC---CcEEEEECCCCCCCCCCCCcchHhhhhhcc--CccEEEEeCCChH
Q 015421 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKG---HKCVILLGGQAKVLNGQESNGFEKLIEPLN--HHRCVITFGYSGV 335 (407)
Q Consensus 261 ~~~~~~~~~~iidD~~a~np~s~~~al~~~~~---~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~--~~~~v~~~g~~~~ 335 (407)
.+.. .++..+|||+|||||+|++++|+.+.. +|+++|+|+|.+.|+++.+ .|.++++.+. ..+.++++|+.+.
T Consensus 829 ~~~~-~~~~~iidDsya~np~s~~aaL~~l~~~~~~~~i~VlG~~~e~g~~~~~-~h~~~g~~~~~~~~~~vi~~Ge~~~ 906 (958)
T PRK11929 829 RRRL-SCGTRIIDDTYNANPDSMRAAIDVLAELPNGPRALVLGDMLELGDNGPA-MHREVGKYARQLGIDALITLGEAAR 906 (958)
T ss_pred EEEc-CCCcEEEEcCCCCCHHHHHHHHHHHHhccCCCEEEEECCchhcCcHHHH-HHHHHHHHHHHcCCCEEEEECcCHH
Confidence 9853 578899999999999999999998852 5889999999998887743 4667777653 3689999999998
Q ss_pred HHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHHHHhhhc
Q 015421 336 LIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFFSK 403 (407)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~~~~~l~ 403 (407)
.+.+.+.... ...++++++|++.+.+.+++||+||++ | ||++.||++++.|+
T Consensus 907 ~i~~~~~~~~----~~~~~~~~~a~~~~~~~~~~gD~VLlk-G-----------Sr~~~le~~~~~~~ 958 (958)
T PRK11929 907 DAAAAFGAGA----RGVCASVDEIIAALRGALPEGDSVLIK-G-----------SRFMRLERVVDALS 958 (958)
T ss_pred HHHHhhhccc----ceeeCCHHHHHHHHHHhcCCCCEEEEE-e-----------CccCcHHHHHHhhC
Confidence 8888765421 123689999999999999999999998 4 79999999999875
No 29
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=100.00 E-value=6.8e-51 Score=433.96 Aligned_cols=331 Identities=16% Similarity=0.195 Sum_probs=258.7
Q ss_pred CCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecc----cCCccchhhhhhcccCCCCCCCCcEEEEEeccc---cccc
Q 015421 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGG----NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY---QMEI 113 (407)
Q Consensus 41 ~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g----~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~g~~---~l~~ 113 (407)
.+.++|+||||||||||++||+++|+..|..+.+.+ ++|.|.+.... ..+++++|+|+|+. .++.
T Consensus 105 ~~~~vIgVTGT~GKTTT~~ll~~iL~~~~~~~~~~~~~n~~ig~p~~~~~~--------~~~~~~~V~E~s~s~~~~~~~ 176 (822)
T PRK11930 105 FDIPVIGITGSNGKTIVKEWLYQLLSPDYNIVRSPRSYNSQIGVPLSVWQL--------NEEHELGIFEAGISQPGEMEA 176 (822)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHhccCcEecCCcccCcchhHHHHHhcC--------CCCCcEEEEEeCCCCCChHHH
Confidence 467899999999999999999999999887665443 46777664322 45778999999943 3344
Q ss_pred CCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeCCChhhHHHHhcc--ccceEEeecCC---Cc
Q 015421 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH--RFNLAWIGAFP---GV 188 (407)
Q Consensus 114 ~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~--~~~~~~~~~~~---~~ 188 (407)
+...++|+++|||||++||+++|+|+|+|+++|.++++. .+.+|+|.||+....+.... ..++++|+... ++
T Consensus 177 l~~~~~PdiaViTNI~~dHLd~~gt~e~y~~aK~~i~~~---~~~~vin~Dd~~~~~~~~~~~~~~~~~~~g~~~~~~d~ 253 (822)
T PRK11930 177 LQKIIKPTIGILTNIGGAHQENFRSIKQKIMEKLKLFKD---CDVIIYNGDNELISSCITKSNLTLKLISWSRKDPEAPL 253 (822)
T ss_pred HhhhhCCCEEEEcCccHHHHhhcCCHHHHHHHHHHHhcC---CCEEEEeCCCHHHHHHHHhhhcCCcEEEEcCCCCCCcE
Confidence 444589999999999999999999999999999999984 47899999999887655322 23566777431 11
Q ss_pred ccc---cccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeee
Q 015421 189 KID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRD 265 (407)
Q Consensus 189 ~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~ 265 (407)
... .......+.+...+.. ..+.+|++|.||++|+++|+ +++..+|++++.|.++|++|++++||||++. .
T Consensus 254 ~~~~i~~~~~~~~~~~~~~~~~---~~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~L~~f~~~~gR~e~~~-~ 327 (822)
T PRK11930 254 YIPFVEKKEDHTVISYTYKGED---FHFEIPFIDDASIENLIHCI--AVLLYLGYSADQIQERMARLEPVAMRLEVKE-G 327 (822)
T ss_pred EEEEEEEcCCceEEEEEeCCce---EEEEecCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCCeeEEEE-c
Confidence 111 0111112332221111 23578999999999999999 8899999999999999999999999999985 2
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHhccC----CCcEEEEECCCCCCCCCCCCcchHhhhhhccC--ccEEEEeCCChHHHHH
Q 015421 266 IQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH--HRCVITFGYSGVLIWK 339 (407)
Q Consensus 266 ~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~--~~~v~~~g~~~~~~~~ 339 (407)
.+++.+|||+|||||+|++++|+.+. ++++++|+|+|.+.|..+ ...|+++++.+.. .+.++++|+....+.+
T Consensus 328 ~~g~~vIdDSyn~nP~s~~aaL~~l~~~~~~~~~ilIlG~m~elG~~~-~~~~~~l~~~l~~~~i~~vi~~G~~~~~~~~ 406 (822)
T PRK11930 328 INNCTLINDSYNSDLQSLDIALDFLNRRSQSKKKTLILSDILQSGQSP-EELYRKVAQLISKRGIDRLIGIGEEISSEAS 406 (822)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEECChHhcCchH-HHHHHHHHHHHHHcCCCEEEEECHHHHHHHH
Confidence 57899999999999999999999884 257899999999888655 3468888887752 7899999988776665
Q ss_pred HHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHHHHhhhccc
Q 015421 340 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFFSKHD 405 (407)
Q Consensus 340 ~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~~~~~l~~~ 405 (407)
.+.. ..+.++++.+++++.+.+.+++||+||++ | ||++.||++++.|+++
T Consensus 407 ~~~~----~~~~~~~~~e~a~~~l~~~~~~gDvVLlK-G-----------Sr~~~le~i~~~~~~~ 456 (822)
T PRK11930 407 KFEG----TEKEFFKTTEAFLKSFAFLKFRNELILVK-G-----------ARKFEFEQITELLEQK 456 (822)
T ss_pred hcCc----cccEEECCHHHHHHHHHHhcCCCCEEEEE-c-----------CCCCCHHHHHHHHHHh
Confidence 4321 13456789999999999999999999998 4 7999999999998654
No 30
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=100.00 E-value=3.7e-49 Score=395.47 Aligned_cols=322 Identities=24% Similarity=0.309 Sum_probs=237.6
Q ss_pred CCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccchhhhhhc-ccCCC-----------CCCCCcEEEEEeccc
Q 015421 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC-IALPS-----------SKPKFQVAVVEVSSY 109 (407)
Q Consensus 42 ~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~-~~~~~-----------~~~~~~~~V~E~g~~ 109 (407)
+.++|+||||||||||++||+++|+..|.++++.||++.++....... .++++ .+.+++++|+|+|++
T Consensus 94 ~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~gn~~~~i~~~~~~~~~~t~~~~~~~~~l~~~~~~~~~~~VlE~~s~ 173 (460)
T PRK00139 94 KLKLIGVTGTNGKTTTAYLLAQILRLLGEKTALIGTLGNGIGGELIPSGLTTPDALDLQRLLAELVDAGVTYAAMEVSSH 173 (460)
T ss_pred ccEEEEEECCCCchhHHHHHHHHHHHcCCCEEEECCcccccCCeecccCCCCcCHHHHHHHHHHHHHCCCCEEEEEcchh
Confidence 678999999999999999999999999999998888777654421100 01110 145789999999976
Q ss_pred ccc--cCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeCCChhhHHHHhccccceEEeecC-C
Q 015421 110 QME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAF-P 186 (407)
Q Consensus 110 ~l~--~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~-~ 186 (407)
+++ .+.. ++|+++|||||++||+++|||+|+|+++|.+|++... +.+|+|.||+.+..+... +.+|+.. .
T Consensus 174 ~~~~~~l~~-~~p~iaViTnI~~dHl~~~gt~e~i~~~K~~i~~~~~--~~~v~n~dd~~~~~~~~~----~~~~~~~~~ 246 (460)
T PRK00139 174 ALDQGRVDG-LKFDVAVFTNLSRDHLDYHGTMEDYLAAKARLFSELG--LAAVINADDEVGRRLLAL----PDAYAVSMA 246 (460)
T ss_pred hHhhchhcC-CcCCEEEEcCCCcccCCcCCCHHHHHHHHHHHHhcCC--CeEEEEcCcHhHHHHHhh----cEEEEecCC
Confidence 654 3333 7999999999999999999999999999999998642 489999999987766542 3344432 1
Q ss_pred CcccccccccceeEeccCCeeeeee-ecccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeee
Q 015421 187 GVKIDTEAKTASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRD 265 (407)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~ 265 (407)
...+ ....+.....+..+.+. .+.++++|.||++|+++|+ +++..+|++++.|.++|++|++++||||++..
T Consensus 247 ~~~~----~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAi--a~a~~lgi~~~~i~~~L~~~~~~~gR~e~~~~- 319 (460)
T PRK00139 247 GADL----RATDVEYTDSGQTFTLVTEVESPLIGRFNVSNLLAAL--AALLALGVPLEDALAALAKLQGVPGRMERVDA- 319 (460)
T ss_pred CCcE----EEEEEEEecCceEEEEEEEEEecccchhHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCCCcEEEEc-
Confidence 1111 00112222223233332 4578999999999999999 89999999999999999999999999999852
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHhccC---CCcEEEEECCCCCCCCCCCCcchHhhhhhc-cC-ccEEEEeCCCh-----H
Q 015421 266 IQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPL-NH-HRCVITFGYSG-----V 335 (407)
Q Consensus 266 ~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l-~~-~~~v~~~g~~~-----~ 335 (407)
.++..+|+| |||||+|++++++.+. ++|+++|+|+..+++. .|++++..+ .. .|.+++++..+ .
T Consensus 320 ~~~~~iI~D-yahNP~s~~aal~~l~~~~~~r~i~VlG~g~~k~~-----~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~ 393 (460)
T PRK00139 320 GQGPLVIVD-YAHTPDALEKVLEALRPHAKGRLICVFGCGGDRDK-----GKRPLMGAIAERLADVVIVTSDNPRSEDPA 393 (460)
T ss_pred CCCCEEEEE-CCCCHHHHHHHHHHHHhhcCCcEEEEECCCCCCch-----hhhHHHHHHHHHcCCEEEEECCCCCCCCHH
Confidence 467889999 7999999999999885 3689999997554432 344444333 22 57777775433 3
Q ss_pred HHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEc-CCCCCcccccC
Q 015421 336 LIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLS-PGCASFDEFRN 387 (407)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~-~G~~s~~~~~~ 387 (407)
.+.+.+.. +. ...++|+++|++.+.+.+++||+||+. +|+..|+.+++
T Consensus 394 ~i~~~~~~-~~---~~~~~d~~~Ai~~~~~~~~~gDvVLv~G~G~e~~~~~~~ 442 (460)
T PRK00139 394 AIIADILA-GI---YDVIEDRAEAIRYAIAQAKPGDVVLIAGKGHEDYQIIGG 442 (460)
T ss_pred HHHHHHHh-CC---CcccCCHHHHHHHHHHhcCCCCEEEEEEccCcccEEECC
Confidence 46665543 21 235689999999999999999998886 67777776554
No 31
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown.
Probab=100.00 E-value=6.2e-49 Score=394.89 Aligned_cols=333 Identities=23% Similarity=0.303 Sum_probs=237.6
Q ss_pred CCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccchhhhh---h-cccCC-----------CCCCCCcEEEEEe
Q 015421 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF---H-CIALP-----------SSKPKFQVAVVEV 106 (407)
Q Consensus 42 ~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~---~-~~~~~-----------~~~~~~~~~V~E~ 106 (407)
+.++|+||||||||||++||+++|+..|.++++.++.|.++..... . ..+++ ..+.+++++|+|+
T Consensus 84 ~~~vI~ITGTnGKTTT~~ml~~iL~~~g~~~~~~~t~g~~~~~n~~ig~p~~~tt~~~~~~~~~l~~~~~~~~~~~VlE~ 163 (464)
T TIGR01085 84 KLKVIGVTGTNGKTTTTSLIAQLLRLLGKKTGLIGTIGYRLGGNDLIKNPAALTTPEALTLQSTLAEMVEAGAQYAVMEV 163 (464)
T ss_pred ccEEEEEECCCCcHhHHHHHHHHHHHcCCCEEEECccceeECCeeeecCcccCCCCCHHHHHHHHHHHHHCCCCEEEEEe
Confidence 5789999999999999999999999999987665555544221000 0 00000 0134678999999
Q ss_pred cccccc--cCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeCCChhhHHHHhccccceEEeec
Q 015421 107 SSYQME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGA 184 (407)
Q Consensus 107 g~~~l~--~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~ 184 (407)
|++.++ .+.. ++|+++|||||++||+++|+|+|+|+++|.++++.+++++.+|+|.|||....+.......+.+...
T Consensus 164 g~~~~~~~~l~~-~~p~iaviTnI~~dHl~~~gs~e~i~~~K~~i~~~~~~~g~~v~n~dd~~~~~~~~~~~~~~~~~~~ 242 (464)
T TIGR01085 164 SSHALAQGRVRG-VRFDAAVFTNLSRDHLDFHGTMENYFAAKASLFTELGLKRFAVINLDDEYGAQFVKRLPKDITVSAI 242 (464)
T ss_pred cHHHHhhCCccC-ceeCEEEEccCCCCCCcccCCHHHHHHHHHHHhccccCCCeEEEEcCCHHHHHHHHhcCCCeEEEEe
Confidence 976543 4444 7999999999999999999999999999999999887788999999999887775443322222211
Q ss_pred CC-------Cccccc---ccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcC-CCHHHHHHHhhcCC
Q 015421 185 FP-------GVKIDT---EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG-VDVEALNSTIEILR 253 (407)
Q Consensus 185 ~~-------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lg-i~~~~i~~~L~~~~ 253 (407)
.. ++.... ......|.+...+.. ..+.+|++|.||++|+++|+ +++..+| ++++.|.++|++|+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~l~G~hn~~NalaAi--a~a~~lg~i~~e~i~~~L~~~~ 317 (464)
T TIGR01085 243 TQPADGRAQDIKITDSGYSFEGQQFTFETPAGE---GHLHTPLIGRFNVYNLLAAL--ATLLHLGGIDLEDIVAALEKFR 317 (464)
T ss_pred cCCCccccccEEEEEEEEecCceEEEEEeCCce---EEEEecCccHhHHHHHHHHH--HHHHHcCCCCHHHHHHHHHhCC
Confidence 11 111000 000112222211111 12468999999999999999 8889998 99999999999999
Q ss_pred CCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC---CCcEEEEECCCCCCCCCCCCcchHhhhhhcc--CccEEE
Q 015421 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLN--HHRCVI 328 (407)
Q Consensus 254 ~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~--~~~~v~ 328 (407)
+++||||++.. .++..+|+| |||||+||+++++.+. ++|+++|+|...++. ..|++++..+. ..|.++
T Consensus 318 ~~~gR~e~~~~-~~g~~vi~D-y~~NP~s~~aal~~l~~~~~~r~i~VlGlg~~~~-----~~~~~~~~~~~~~~~d~vi 390 (464)
T TIGR01085 318 GVPGRMELVDG-GQKFLVIVD-YAHTPDALEKALRTLRKHKDGRLIVVFGCGGDRD-----RGKRPLMGAIAEQLADLVI 390 (464)
T ss_pred CCCCCcEEEEc-CCCCEEEEE-CCCCHHHHHHHHHHHHhhCCCcEEEEECCCCCCC-----cchhHHHHHHHHhcCCEEE
Confidence 99999999852 457899999 7999999999999884 468899999433332 13666666553 257888
Q ss_pred EeCCCh-----HHHHHHHHhC-CCCccccccccHHHHHHHHHHhcCCCCEEEEc-CCCCCcccccC
Q 015421 329 TFGYSG-----VLIWKTLVNN-GLSIPCFAVANMKDAVNHARRMATNGDAIVLS-PGCASFDEFRN 387 (407)
Q Consensus 329 ~~g~~~-----~~~~~~l~~~-~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~-~G~~s~~~~~~ 387 (407)
++|+.+ ..+.+.+... .....+..++|+++|++++.+.+++||+||++ +|+.+|+.+++
T Consensus 391 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~d~VLv~G~g~~~~~~~~~ 456 (464)
T TIGR01085 391 LTSDNPRGEDPEQIIADILAGISEKEKVVIIADRRQAIRYAISNAKAGDVVLIAGKGHEDYQIIGG 456 (464)
T ss_pred EeCCCcCCCCHHHHHHHHHhcccCCCcEEEECCHHHHHHHHHHhcCCCCEEEEEEcCCcccEEECC
Confidence 877653 3343333221 10112455789999999999999999999996 88888887654
No 32
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=100.00 E-value=1e-47 Score=408.54 Aligned_cols=355 Identities=14% Similarity=0.162 Sum_probs=258.0
Q ss_pred eeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCc--eeecccCCcc
Q 015421 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLGNP 81 (407)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~--~~~~g~~g~~ 81 (407)
+||+||+++++||++++|++.|+|++++++++++.. +..++|+||||||||||++|++++|+.+|.+ +.++|++|.|
T Consensus 66 ~vV~SpgI~~~~p~~~~a~~~gi~v~~~~el~~~~~-~~~~~IaITGTnGKTTTt~li~~iL~~~g~~~~~~~gG~~g~~ 144 (809)
T PRK14573 66 VVVYSSSISKDNVEYLSAKSRGNRLVHRAELLAELM-QEQISILVSGSHGKTTVSSLITAIFQEAKKDPSYAIGGLNQEG 144 (809)
T ss_pred EEEECCCcCCCCHHHHHHHHCCCcEEeHHHHHHHHH-cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCeEEECCccccc
Confidence 699999999999999999999999999999999887 4458999999999999999999999999975 4678888887
Q ss_pred chhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccC-CCHHHHHHHHHHhhcccCCCceEE
Q 015421 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGL 160 (407)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~-~t~e~i~~~K~~i~~~~~~~~~~v 160 (407)
+... ..+.+++|+|+|+.+ .... .++|+++|||||++||+|+| +|+|+|+++|..+++.+++.+.+|
T Consensus 145 ~~~~----------~~~~d~~V~E~ss~~-~~~~-~~~P~iaViTNI~~DHLd~~~gs~e~y~~ak~~~~~~~~~~~~~V 212 (809)
T PRK14573 145 LNGY----------SGSSEYFVAEADESD-GSLK-HYTPEFSVITNIDNEHLSNFEGDRELLLASIQDFARKVQQINKCF 212 (809)
T ss_pred cccc----------cCCCCEEEEECCCCc-chhh-eeecCEEEEeCCChhhhhhhcCCHHHHHHHHHHHHhcCCCCCEEE
Confidence 6542 224688999999875 3222 48999999999999999998 799999999999988777788999
Q ss_pred EeCCChhhHHHHhccccceEEeecCC--Ccc---cccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHH
Q 015421 161 LPFGNQHLNEAIKGHRFNLAWIGAFP--GVK---IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLG 235 (407)
Q Consensus 161 ~n~dd~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~ 235 (407)
+|.||+.+.... +..+|+... ++. +..+.....|.+...+. .+....++++|.||++|+++|+ +++
T Consensus 213 ~N~Dd~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~~~f~l~~~~~--~~~~~~l~l~G~hn~~Na~aAi--a~~ 283 (809)
T PRK14573 213 YNGDCPRLKGCL-----QGHSYGFSSSCDLHILSYYQEGWRSYFSAKFLGV--VYQDIELNLVGMHNVANAAAAM--GIA 283 (809)
T ss_pred EeCCCHHHHhhc-----ccEEEccCCCCcEEEEEEEecCCeEEEEEEECCc--eEEEEEeccccHhhHHHHHHHH--HHH
Confidence 999999765432 123444321 111 00011111122211111 1123468899999999999999 888
Q ss_pred HHcCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC----CCcEEEEECCCCCCCCCCCC
Q 015421 236 LDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQES 311 (407)
Q Consensus 236 ~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~g~~~~~~~~~~~ 311 (407)
..+|++.+.|.++|++|++++||||++. ..+++.+|+| |||||++++++++.+. .+|+++||++..+... +
T Consensus 284 ~~lgi~~~~i~~~L~~f~~~~~R~e~~~-~~~~~~~i~D-~ahnP~~~~a~l~~l~~~~~~~rli~vf~~~~~~~~---~ 358 (809)
T PRK14573 284 LTLGIDEGAIRNALKGFSGVQRRLERKN-SSETFLFLED-YAHHPSEISCTLRAVRDAVGLRRIIAICQPHRFSRL---R 358 (809)
T ss_pred HHcCCCHHHHHHHHHhCCCCCCCCEEEe-ccCCcEEEEE-CCCCHHHHHHHHHHHHhhcCCCEEEEEEcCCcchhH---H
Confidence 9999999999999999999999999986 3467889999 6999999999998773 3678899976544322 2
Q ss_pred cchHhhhhhccCccEEEEeC-----------CChHHHHHHHHhCCC-CccccccccHHHHHHHHHHhcCCCCEEEEcCCC
Q 015421 312 NGFEKLIEPLNHHRCVITFG-----------YSGVLIWKTLVNNGL-SIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 379 (407)
Q Consensus 312 ~~~~~~~~~l~~~~~v~~~g-----------~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~ 379 (407)
..+.++...+...|.++++. .+++.+.+.++..+. ...+...++..++++ +.++++|++|+. |+
T Consensus 359 ~~~~~~~~~l~~~d~vilt~~~~~~e~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~al~---~~~~~~d~~~il-~~ 434 (809)
T PRK14573 359 ECLDSFPSAFQDADEVILTDVYSAGEEPEDSISYQKLAEAISQSSIVKCTYVPFHEIQRYLE---QSIRVHDVCVSL-GA 434 (809)
T ss_pred HHHHHHHHHHHHCCEEEECCccCCCCCCCCCCCHHHHHHHHhhcCCCceeecCHHHHHHHHH---HhcCCCCEEEEE-CC
Confidence 23455555555567777742 123456666643210 001122334444443 334566876553 88
Q ss_pred CCcccccChh
Q 015421 380 ASFDEFRNFE 389 (407)
Q Consensus 380 ~s~~~~~~~~ 389 (407)
|||+.+....
T Consensus 435 GSly~i~~~~ 444 (809)
T PRK14573 435 GNIYTLGEAL 444 (809)
T ss_pred CCHHHHHHHH
Confidence 9999876654
No 33
>PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional
Probab=100.00 E-value=8.4e-48 Score=387.73 Aligned_cols=317 Identities=23% Similarity=0.288 Sum_probs=227.3
Q ss_pred CCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCC-------------ccchhhhhhcccCCCCCCCCcEEEEEec
Q 015421 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLG-------------NPLSEAAFHCIALPSSKPKFQVAVVEVS 107 (407)
Q Consensus 41 ~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g-------------~~~~~~~~~~~~~~~~~~~~~~~V~E~g 107 (407)
.++++|+||||||||||++||+++|+..|.++.+.|+.| .|.....+.... ...+.+.+++|+|+|
T Consensus 108 ~~~~vIgITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~~~~ig~~~~~~~~~~p~~~~l~~~~~-~~~e~g~~~~v~Evs 186 (481)
T PRK14022 108 HKLKLLAFTGTKGKTTAAYFAYHILKQLHKPAMLSTMNTTLDGETFFKSALTTPESLDLFKMMA-EAVDNGMTHLIMEVS 186 (481)
T ss_pred hccEEEEEeCCCcHHHHHHHHHHHHHHCCCCEEEEeeeeeccCCeeeeCCCCCchHHHHHHHHH-HHHHCCCCEEEEEec
Confidence 467899999999999999999999999998776555432 452211110000 001346788999999
Q ss_pred ccccccCCc-cccceEEEEecCChhhhcc--CCCHHHHHHHHHHhhcccCCCceEEEeCC-ChhhHHHHhccccceEEee
Q 015421 108 SYQMEIPNK-YFCPTVSVVLNLTPDHLER--HKTMKNYALTKCHLFSHMVNTKLGLLPFG-NQHLNEAIKGHRFNLAWIG 183 (407)
Q Consensus 108 ~~~l~~~~~-~~~p~i~viTni~~dHl~~--~~t~e~i~~~K~~i~~~~~~~~~~v~n~d-d~~~~~~~~~~~~~~~~~~ 183 (407)
++++...+. .++|+++|||||++||+++ |+|+|+|+++|++|++ +++.+|+|.| |+...........++++|+
T Consensus 187 S~~~~~~r~~~~~pdiaViTNI~~DHld~L~~~t~e~~a~aK~~i~~---~~~~~Vln~d~d~~~~~~~~~~~~~~~~~g 263 (481)
T PRK14022 187 SQAYLVGRVYGLTFDVGVFLNITPDHIGPIEHPTFEDYFYHKRLLME---NSKAVVVNSDMDHFSELLEQVTPQEHDFYG 263 (481)
T ss_pred hhHHHhccccCccccEEEEcCCCcccCCCCCCCCHHHHHHHHHHHhc---CCCEEEEEcCCCHHHHHHHHhcCCCEEEEe
Confidence 875432221 3799999999999999999 8999999999999997 4679999998 5543322222223567777
Q ss_pred cCCCcccccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEe
Q 015421 184 AFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263 (407)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~ 263 (407)
......+... ..+.+...+.. ...+.++++|.||++|+++|+ +++..+|++++.|.++|++ .+++||||++.
T Consensus 264 ~~~~~~~~~~---~~~~~~~~~~~--~~~~~l~l~G~hnv~NalaAi--a~a~~lgi~~~~i~~~L~~-~~~~gR~e~i~ 335 (481)
T PRK14022 264 IDSENQIMAS---NAFSFEATGKL--AGTYDIQLIGKFNQENAMAAG--LACLRLGASLEDIQKGIAQ-TPVPGRMEVLT 335 (481)
T ss_pred cCCccceEEE---EEEEEEEcccC--CceEEEEEechhhHHHHHHHH--HHHHHcCCCHHHHHHHhcc-CCCCCCeEEEE
Confidence 5321111100 01222211100 012357799999999999999 8889999999999999999 99999999995
Q ss_pred eecCCEEEEEcCCCCCHHHHHHHHhccC---CCcEEEEECCCCCCCCCCCCcchHhhhhhccC-cc-EEEEeC-----CC
Q 015421 264 RDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HR-CVITFG-----YS 333 (407)
Q Consensus 264 ~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~-~~-~v~~~g-----~~ 333 (407)
. .++..+|+| |||||+|++++++.+. ++|+++|+|+|.|+|... +.++++.+.. .+ .+++++ ++
T Consensus 336 ~-~~g~~vi~D-yahNP~s~~aal~~l~~~~~~r~i~V~G~~~e~g~~~----~~~~~~~~~~~~~~~vi~~~~~~r~e~ 409 (481)
T PRK14022 336 Q-SNGAKVFID-YAHNGDSLNKLIDVVEEHQKGKLILLLGAAGNKGESR----RPDFGRVANRHPYLQVILTADDPNNED 409 (481)
T ss_pred C-CCCCEEEEE-CCCCHHHHHHHHHHHhhhCCCCEEEEECCCCCCCcch----hHHHHHHHHhcCCceEEEccCCCCCCC
Confidence 2 467789999 6999999999998883 468999999999988654 4556665543 23 366665 34
Q ss_pred hHHHHHHHHhCCCCccccccccHHHHHHHHHHhcC-CCCEEEEc
Q 015421 334 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMAT-NGDAIVLS 376 (407)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~-~gd~vL~~ 376 (407)
+..+.+.+.... ...+..++|+++|++.+.+.++ +||+||+.
T Consensus 410 ~~~i~~~i~~~~-~~~~~~~~d~~~Ai~~a~~~a~~~gD~VLi~ 452 (481)
T PRK14022 410 PKMITQEIASHI-THPVEIIDDRAEAIKHAMSITEGPGDAVIIA 452 (481)
T ss_pred HHHHHHHHHhcC-CCCeEEECCHHHHHHHHHHhcCCCCCEEEEE
Confidence 477777775421 1134567899999999999999 99999984
No 34
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=4.1e-47 Score=412.15 Aligned_cols=341 Identities=22% Similarity=0.307 Sum_probs=245.4
Q ss_pred CCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccchhhhhhcc-cCC-----------CCCCCCcEEEEEecc
Q 015421 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCI-ALP-----------SSKPKFQVAVVEVSS 108 (407)
Q Consensus 41 ~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~~-~~~-----------~~~~~~~~~V~E~g~ 108 (407)
++.++|+||||||||||++||+++|+..|+++++.|++|.++....+... +++ ..+.+++++|+|+|+
T Consensus 110 ~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~~~~i~~~~i~~~~t~~~~~~~~~~l~~~~~~~~~~~VlE~ss 189 (958)
T PRK11929 110 EQLSLVAVTGTNGKTSCAQLLAQLLTRLGKPCGSIGTLGARLDGRLIPGSLTTPDAIILHRILARMRAAGADAVAMEASS 189 (958)
T ss_pred hccEEEEEECCCccHHHHHHHHHHHHHcCCCEEEECCccccCCCeeeecCCCCCCHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 46789999999999999999999999999999888888776543222111 111 114578999999998
Q ss_pred cccc--cCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeCCChhhHHHHhccc--cceEEeec
Q 015421 109 YQME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR--FNLAWIGA 184 (407)
Q Consensus 109 ~~l~--~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~--~~~~~~~~ 184 (407)
++++ .+.. ++|+++|||||++||+++|||+|+|+++|++|++.+++++.+|+|.|||....+..... ..+.+++.
T Consensus 190 ~~l~~~rl~~-~~p~iaviTnI~~dHl~~~gt~e~i~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~~~~ 268 (958)
T PRK11929 190 HGLEQGRLDG-LRIAVAGFTNLTRDHLDYHGTMQDYEEAKAALFSKLPGLGAAVINADDPAAARLLAALPRGLKVGYSPQ 268 (958)
T ss_pred chHhhCcccc-cccCEEEEeCCCccccccCCCHHHHHHHHHHHhcCCccCCeEEEECCCHHHHHHHHHcCCCceEEEEee
Confidence 7664 3333 68999999999999999999999999999999998888899999999998877764332 13444442
Q ss_pred CC--Ccccc---cccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCce
Q 015421 185 FP--GVKID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259 (407)
Q Consensus 185 ~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~ 259 (407)
.. ++... .......|.+...+... .+.++++|.||++|+++|+ +++..+|++++.|.++|++|++++|||
T Consensus 269 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~a~~lgi~~~~I~~~L~~~~~~~gR~ 343 (958)
T PRK11929 269 NAGADVQARDLRATAHGQVFTLATPDGSY---QLVTRLLGRFNVSNLLLVA--AALKKLGLPLAQIARALAAVSPVPGRM 343 (958)
T ss_pred CCCccEEEEEEEEcCCceEEEEEeCCceE---EEEecCccHhhHHHHHHHH--HHHHHcCCCHHHHHHHHhcCCCCCCCc
Confidence 21 22111 01111123322211111 2468999999999999999 889999999999999999999999999
Q ss_pred eEEe--eecCCEEEEEcCCCCCHHHHHHHHhccC------CCcEEEEECCCCCCCCCCCCcchHhhhhhcc--CccEEEE
Q 015421 260 QIVH--RDIQGVTWVDDSKATNLEATCTGLMDLK------GHKCVILLGGQAKVLNGQESNGFEKLIEPLN--HHRCVIT 329 (407)
Q Consensus 260 e~~~--~~~~~~~iidD~~a~np~s~~~al~~~~------~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~--~~~~v~~ 329 (407)
|++. ...++..+|+| |||||+|++++++.+. ++|+++|+|+..+++. .++++...+. ..|.+++
T Consensus 344 e~i~~~~~~~~~~vi~D-yahnP~s~~a~l~~l~~~~~~~~~r~i~V~g~g~~r~~-----~~~~~~~~~~~~~~d~vi~ 417 (958)
T PRK11929 344 ERVGPTAGAQGPLVVVD-YAHTPDALAKALTALRPVAQARNGRLVCVFGCGGDRDK-----GKRPEMGRIAAELADRVVV 417 (958)
T ss_pred EEeccccCCCCCEEEEE-CCCCHHHHHHHHHHHHHhcccCCCcEEEEECCCCCCCc-----chhHHHHHHHHHhCCEEEE
Confidence 9983 11356778888 6999999999999884 3678999997765543 2344444332 2577776
Q ss_pred eC-----CChHHHHHHHHhCCCC--ccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHH
Q 015421 330 FG-----YSGVLIWKTLVNNGLS--IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 396 (407)
Q Consensus 330 ~g-----~~~~~~~~~l~~~~~~--~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~ 396 (407)
+. +++..+.+.+.. +.. ..+..++|+++|++.+.+.+++||+||++ | ...+.|+.+..|+..|.
T Consensus 418 t~~~pr~e~p~~i~~~i~~-~~~~~~~~~~~~d~~~Ai~~a~~~a~~gD~VLv~-G-sG~e~~~~~~~~~~~f~ 488 (958)
T PRK11929 418 TSDNPRSEAPEAIIDQILA-GIPAGARVFVISDRAEAIRQAIWMAAPGDVILIA-G-KGHETYQEIGGRKLFFD 488 (958)
T ss_pred cCCCCCCCCHHHHHHHHHh-hccCCCceEEECCHHHHHHHHHHhcCCCCEEEEe-e-cCcchheEECCEecCCC
Confidence 53 334667766643 211 13566789999999999999999999886 3 23444445555555543
No 35
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=100.00 E-value=2e-45 Score=362.34 Aligned_cols=319 Identities=20% Similarity=0.234 Sum_probs=227.1
Q ss_pred CCCcEEEEecCCChHhHHHHHHHHHHhcCCceee--cccC----------Cccchhhhhhc--------c-c---CC---
Q 015421 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFV--GGNL----------GNPLSEAAFHC--------I-A---LP--- 93 (407)
Q Consensus 41 ~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~--~g~~----------g~~~~~~~~~~--------~-~---~~--- 93 (407)
+++++|+||||||||||++||+++|+.+|++++. ++++ |.+++...+.. . . ++
T Consensus 16 ~~~~vI~VtGTNGKgSt~~~l~~iL~~~g~~vg~~tSphl~~~~eri~i~g~~i~~~~~~~~~~~v~~~~~~~~~~~~~f 95 (397)
T TIGR01499 16 DLYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLVSFNERIRINGEPISDEELAQAFEQVRPILEKLSQQPTYF 95 (397)
T ss_pred hhCCEEEEeCCCChHHHHHHHHHHHHHcCCCeeEEeCCCcCccceEEEECCEECCHHHHHHHHHHHHHHHHhccCCCCHH
Confidence 4578999999999999999999999999999953 3332 55555432210 0 0 11
Q ss_pred ----------CCCCCCcEEEEEec-ccccccCCccccceEEEEecCChhhhccCC-CHHHHHHHHHHhhcccCCCceEEE
Q 015421 94 ----------SSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLL 161 (407)
Q Consensus 94 ----------~~~~~~~~~V~E~g-~~~l~~~~~~~~p~i~viTni~~dHl~~~~-t~e~i~~~K~~i~~~~~~~~~~v~ 161 (407)
+.+.++|++|+|+| +|++|.++. ++|+++|||||+.||+++|| |+|+|+++|++|++ +++.+|+
T Consensus 96 e~~t~~A~~~f~~~~~d~~VlEvGlggrld~tn~-i~p~vaViTnI~~DHl~~lG~t~e~ia~~Ka~I~k---~~~~~v~ 171 (397)
T TIGR01499 96 ELLTLLAFLYFAQAQVDVAVLEVGLGGRLDATNV-IEPLVSVITSIGLDHTEILGDTLEEIAWEKAGIIK---EGVPIVT 171 (397)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeecCCCCcccccc-cCCCeEEEccccHHHHHHhCccHHHHHHHHhCccC---CCCCEEE
Confidence 12568899999999 578888776 78999999999999999998 99999999999998 4568999
Q ss_pred eCCChhhHHHHh----ccccceEEeecCCCcccccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHH
Q 015421 162 PFGNQHLNEAIK----GHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD 237 (407)
Q Consensus 162 n~dd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~ 237 (407)
|.||+....+.. ....++++++.+ +.+... ....+.+..... ....+.++++|.||++|+++|+ +++..
T Consensus 172 ~~d~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~--~~~~~~~~l~G~~~~~N~~~Ai--aa~~~ 244 (397)
T TIGR01499 172 GPQEPEALNVLKKKAQEKGAPLFVVGRD--FNYSET-DENYLSFSGANL--FLEPLALSLLGDHQAENAALAL--AALEV 244 (397)
T ss_pred cCCChHHHHHHHHHHHHcCCCEEEeccc--eeeccc-ccceEEeecccc--cccccCCCCCCHHHHHHHHHHH--HHHHH
Confidence 999987765532 223445555532 111100 011233321110 1112467899999999999999 77777
Q ss_pred cCC-----CHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC----CCcEEEEECCCCCCCCC
Q 015421 238 IGV-----DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNG 308 (407)
Q Consensus 238 lgi-----~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~g~~~~~~~~ 308 (407)
+|. +.+.|.++|+++. +|||||++. .++..+|.| ++|||+|+.++++.+. ++++++|+|+..+++
T Consensus 245 lg~~~~~i~~~~i~~~L~~~~-~pGR~e~i~--~~~~~viiD-~AHNp~a~~~~l~~l~~~~~~~~i~~V~G~~~dkd-- 318 (397)
T TIGR01499 245 LGKQRPKLSEEAIRKGLANTI-WPGRLEILS--EDNPNILLD-GAHNPHSAEALAEWFKKRFNGRPIILLFGALADKD-- 318 (397)
T ss_pred HHhccCCCCHHHHHHHHHhCC-CCceEEEEe--cCCCEEEEE-CCCCHHHHHHHHHHHHHhcCCCCeEEEEEeeCCCC--
Confidence 775 5899999999997 999999995 334555556 4999999999998874 357889999887653
Q ss_pred CCCcchHhhhhhccC-c--cEEEEe-----CCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCC
Q 015421 309 QESNGFEKLIEPLNH-H--RCVITF-----GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCA 380 (407)
Q Consensus 309 ~~~~~~~~~~~~l~~-~--~~v~~~-----g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~ 380 (407)
+.++.+.+.+ . |.+++. ++++..+.+.+.... +...+++++|++.+. .++++|+||++ |
T Consensus 319 -----~~~~~~~l~~~~~~d~~~~~~~~~r~~~~~~i~~~~~~~~----~~~~~~~~~ai~~a~-~~~~~d~vlv~---G 385 (397)
T TIGR01499 319 -----AAAMLAPLKPVVDKEVFVTPFDYPRADDAADLAALAETFG----KETVEDWREALALAL-NASAEDDILVT---G 385 (397)
T ss_pred -----HHHHHHHHhhccCcEEEEECCCCCCCCCHHHHHHHHHHcC----ceecCCHHHHHHHHH-hCCCCCEEEEE---c
Confidence 3344444322 2 244443 345667777665431 345789999999988 77889999987 6
Q ss_pred CcccccChh
Q 015421 381 SFDEFRNFE 389 (407)
Q Consensus 381 s~~~~~~~~ 389 (407)
||+.+..+.
T Consensus 386 Slyl~~~~~ 394 (397)
T TIGR01499 386 SLYLVGEVR 394 (397)
T ss_pred cHHHHHHHH
Confidence 888776654
No 36
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.8e-44 Score=357.21 Aligned_cols=336 Identities=23% Similarity=0.317 Sum_probs=253.8
Q ss_pred CCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccchhhhhh--cccCCC-----------CCCCCcEEEEEec
Q 015421 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFH--CIALPS-----------SKPKFQVAVVEVS 107 (407)
Q Consensus 41 ~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~--~~~~~~-----------~~~~~~~~V~E~g 107 (407)
+++++|+||||||||||++++.++++..|.++...|+.|.-++..... ..++|. .+...+++++|++
T Consensus 89 ~~l~vigvTGTNgKTt~t~~~~~~~~~~g~~~~~~gT~g~~~~~~~~~~~~~tTP~~~~l~~~~~~~~d~~~e~~vmEvs 168 (475)
T COG0769 89 GKLKVIGVTGTNGKTTTTSLLAQILKKLGKKTALIGTEGDELSPGILEPTGLTTPEALDLQNLLRDLLDRGAEIAVMEVS 168 (475)
T ss_pred cCceEEEEcCCCcHHHHHHHHHHHHHhcCCceEEEEEEeeeccCCcccccCCCCccHHHHHHHHHHHHHcCCcEEEEEee
Confidence 368999999999999999999999999999887666655444211111 123332 2567899999999
Q ss_pred ccccccCCcc-ccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeCCChhhHHH---HhccccceEEee
Q 015421 108 SYQMEIPNKY-FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEA---IKGHRFNLAWIG 183 (407)
Q Consensus 108 ~~~l~~~~~~-~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~---~~~~~~~~~~~~ 183 (407)
++++.+.+.. ...+++++||++.||+|+|+|+|+|+.+|..+|..+++.+.+|+|.||+....+ ......+.++++
T Consensus 169 sh~l~~~Rv~~~~f~v~~ftnls~DHlD~h~t~e~Y~~aK~~lf~~~~~~~~~Vin~dd~~~~~~~~~~~~~~~~~~~~~ 248 (475)
T COG0769 169 SHGLVQGRVEGVTFDVGVFTNLSRDHLDYHGTMEYYGAAKAVLFESLPHSGEAVINPDDGHGLDYKERLKNALGDYITYG 248 (475)
T ss_pred hhHHHhCCccCceEEEEeccccCchhhcccCcHHHHHHHHHHHHhhcCCCccEEEccCCchHHHHHHHHHhcCCCEEEeC
Confidence 9988776654 478999999999999999999999999999999867778899999999998444 333333577777
Q ss_pred cCCCcc------cccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCC
Q 015421 184 AFPGVK------IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257 (407)
Q Consensus 184 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~~g 257 (407)
...... ++....+..+.+...+. ...+++|++|.||++|+++|+ +++..+|+|+++|.++|++|+|++|
T Consensus 249 ~~~~~~~~~~~~i~~~~~g~~~~~~~~~~---~~~~~~~L~G~fNv~NaLaA~--a~~~~lG~~~e~i~~~l~~~~~v~G 323 (475)
T COG0769 249 CDFKRPDLDYRGIEESSSGSDFVFEPSGG---IGEYELPLPGLFNVYNALAAV--AAALALGVDLEDILAGLETLKPVPG 323 (475)
T ss_pred CCCchhhhhhccceeeeccceeEEEccCC---ceeEeccccchhHHHHHHHHH--HHHHHcCCCHHHHHHHHHhcCCCCC
Confidence 653211 11111111111111111 123479999999999999999 8899999999999999999999999
Q ss_pred ceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC---CCcEEEEECCCCCCCCCCCCcchHhhhhhccCccEEEEe----
Q 015421 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITF---- 330 (407)
Q Consensus 258 R~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~---- 330 (407)
|||.+.. ++..++.| |+|||++++++|+.+. .+++++|+|+.+|+ +.+++..+..++..++ |.++++
T Consensus 324 RmE~v~~--~~~~v~VD-yAHnPd~le~~L~~~~~~~~g~li~VfG~gGDr-D~~kr~~mg~ia~~~a--d~vivt~dnp 397 (475)
T COG0769 324 RMELVNI--GGKLVIVD-YAHNPDGLEKALRAVRLHAAGRLIVVFGCGGDR-DKSKRPDMGAIAEQLA--DIVIVTSDNP 397 (475)
T ss_pred cceEecC--CCCeEEEE-eccChHHHHHHHHHHHhhcCCcEEEEECccCCC-CcccccchHHHHHhcC--CcEEEcCCCC
Confidence 9999963 36666666 6999999999998874 47899999999988 7777778888877765 555555
Q ss_pred -CCChHHHHHHHHhCCCC-ccccccccHHHHHHHHHHhcCCCCEEEEc-CCCCCcccccC
Q 015421 331 -GYSGVLIWKTLVNNGLS-IPCFAVANMKDAVNHARRMATNGDAIVLS-PGCASFDEFRN 387 (407)
Q Consensus 331 -g~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~a~~~~~~gd~vL~~-~G~~s~~~~~~ 387 (407)
++++..+.+.+...-.. ..+....|+++|+++++..++++|+|++. +|+..++.+.+
T Consensus 398 R~edp~~i~~~i~~g~~~~~~~~~~~dr~~AI~~ai~~a~~~D~vliagkGhe~yq~~~~ 457 (475)
T COG0769 398 RSEDPAVILADILAGIEAPEKYEIIEDREEAIRKALDLAKEGDVVLIAGKGHETYQIMLE 457 (475)
T ss_pred CCcCHHHHHHHHHhccCCccceecchhHHHHHHHHHHhhccCCEEEEeeccchhhhhhhc
Confidence 34455555555443111 12566789999999999999999988875 88999888776
No 37
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=100.00 E-value=2.5e-43 Score=374.27 Aligned_cols=328 Identities=19% Similarity=0.209 Sum_probs=236.2
Q ss_pred CCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccchhhhhhc--ccC------CCCCCCCcEEEEEeccccc-
Q 015421 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC--IAL------PSSKPKFQVAVVEVSSYQM- 111 (407)
Q Consensus 41 ~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~--~~~------~~~~~~~~~~V~E~g~~~l- 111 (407)
.++|+|+||||||||||++||+++|+..|++++..++.|..+....+.. .+. -..++++|++|+|+|++++
T Consensus 477 ~~ipiI~VTGTNGKTTTt~mia~IL~~~G~~vG~~tS~G~~i~~~~i~~g~~t~p~sa~~~l~~~~vd~aVlE~~~ggil 556 (864)
T TIGR02068 477 GRIPIVSVTGTNGKTTTTRLVAHILKQTGKVVGMTTTDGVYIGKYLVEKGDNTGPASARRILMDPTVDAAVLETARGGIL 556 (864)
T ss_pred CceEEEEEeCCCCHhHHHHHHHHHHHHCCCcEEEecCCceEECCEEEecCCCCChHHHHHHhhCCCCCEEEEEccCCchh
Confidence 4578999999999999999999999999998865443332221111000 000 0125678999999998765
Q ss_pred ccCCccccceEEEEecCChhhhccC--CCHHHHHHHHHHhhcccCCCceEEEeCCChhhHHHHhccccceEEeecCCCcc
Q 015421 112 EIPNKYFCPTVSVVLNLTPDHLERH--KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVK 189 (407)
Q Consensus 112 ~~~~~~~~p~i~viTni~~dHl~~~--~t~e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~ 189 (407)
+....+.+|+++|||||+.||++++ +|+|+|+++|+.+++.+++++.+|+|.|||.+..++.....++++|+.+.+..
T Consensus 557 ~~gl~~~~pdvaVITNI~~DHL~~~g~~tlE~ia~~K~~i~~~i~~~g~~VlNaDd~~~~~~a~~~~~~vi~f~~~~~~~ 636 (864)
T TIGR02068 557 REGLAFDRCDVGVVTNIAGDHLGIGDINTIEDLADVKRVVVEVVLPDGYAVLNADDPMVAAMAEKCKGKIAYFSMDPNNP 636 (864)
T ss_pred hccCCcccccEEEEecCCHHHcCCCCCCCHHHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHhCCCCEEEEecCCCCh
Confidence 4444446899999999999999864 69999999999999988889999999999998888766666788887543211
Q ss_pred -----cccccc-----cceeEeccCCeee---eeeecccCCCC--hhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCC
Q 015421 190 -----IDTEAK-----TASFEVPAVGVVS---QLQLHNMKVMG--RHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254 (407)
Q Consensus 190 -----~~~~~~-----~~~~~~~~~~~~~---~~~~~~l~~~G--~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~ 254 (407)
...... ...+.+...+... ....+.++++| .||++|+++|+ ++++.+|++++.|.++|++|.+
T Consensus 637 ~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~lpl~~~G~g~~nv~NalaAi--aaa~~lgi~~e~I~~gL~~F~~ 714 (864)
T TIGR02068 637 TVAAHIADGGRAVYYENGYIVIARGGDEVAIARIAAIPLTMGGRVAFQIENALAAV--AAAWALGVPIELIRAGIRTFDA 714 (864)
T ss_pred HHHHHHHcCCcEEEEcCCEEEEEecCccccccceeeeccccCCcccchHHHHHHHH--HHHHHcCCCHHHHHHHHHhccc
Confidence 000000 0001111111110 11122344445 89999999999 8899999999999999999987
Q ss_pred ----CCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhcc---CCCcEEEEECCCCCCCCCCCCcchHhhhhhccC-ccE
Q 015421 255 ----PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL---KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRC 326 (407)
Q Consensus 255 ----~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~---~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~-~~~ 326 (407)
++||||++. .++..+|+| |||||+|++++++.+ +.+|+++|+|++.++.+. .+.++++.+.+ .|.
T Consensus 715 ~~~~~pGR~e~~~--~~g~~vI~D-yAHNP~a~~all~~l~~~~~~r~i~Vig~~gdr~~~----~~~~lg~~l~~~~d~ 787 (864)
T TIGR02068 715 DAAQAPGRFNLFN--LGGAHVLVD-YGHNPAAIEAVGAAIRNWPARRRIGVIGGPGDRRDE----DLVEQGELLGGAFDQ 787 (864)
T ss_pred cccCCCCceEEEE--eCCcEEEEE-cCCCHHHHHHHHHHHHhcCCCCEEEEECCCCCCChh----HHHHHHHHHHHhCCE
Confidence 999999984 467788888 599999999877765 346789999999766432 46677777654 677
Q ss_pred EEEe----------CCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcC
Q 015421 327 VITF----------GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377 (407)
Q Consensus 327 v~~~----------g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~ 377 (407)
++++ |+.+..+.+.+.+.+....+..+++.++|++.|.+.+++||+||+.+
T Consensus 788 vil~~~~~~rg~~~ge~~~~i~~~~~~~~~~~~v~~~~d~~eAi~~a~~~a~~gDlVLi~~ 848 (864)
T TIGR02068 788 IILKEDDDVRGRPRGEAAALLRQGLRQSARKAAIEDILDETEAIAAALDDLRAGDLVVIFP 848 (864)
T ss_pred EEEEeCCCcCCCCCchHHHHHHHHHHhcCCCCcEEEEcCHHHHHHHHHHhCCCCCEEEEEe
Confidence 8775 23344555555443322245668899999999999999999999974
No 38
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]
Probab=100.00 E-value=3.2e-42 Score=333.09 Aligned_cols=330 Identities=19% Similarity=0.236 Sum_probs=237.2
Q ss_pred eeHHHHHHhhC---CCCCcEEEEecCCChHhHHHHHHHHHHhcCCce--eecccC----------Cccchhhhhhc----
Q 015421 29 MSELDFAAQVI---PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA--FVGGNL----------GNPLSEAAFHC---- 89 (407)
Q Consensus 29 l~~~~~~~~~~---~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~--~~~g~~----------g~~~~~~~~~~---- 89 (407)
|.|+..+.+.+ ++..++|+|+|||||+|||+|+.++|.++|+++ +|++++ |.|+++..+..
T Consensus 27 L~Ri~~ll~~LGnP~~~~~vIhVaGTNGKGSt~afl~siL~~aG~~VG~yTSPHL~~~~ERI~ing~~Isd~~~~~~~~~ 106 (427)
T COG0285 27 LERISRLLERLGNPQKSPPVIHVAGTNGKGSTCAFLESILREAGYKVGVYTSPHLLSFNERIRINGEPISDEELAAAFER 106 (427)
T ss_pred hHHHHHHHHHcCCccccCCeEEEeCCCCchhHHHHHHHHHHHcCCCceEECCCccCccceEEEECCEECCHHHHHHHHHH
Confidence 78888777665 356789999999999999999999999999998 467764 56666664321
Q ss_pred ---cc-----C-C-------------CCCCCCcEEEEEec-ccccccCCccccceEEEEecCChhhhccCC-CHHHHHHH
Q 015421 90 ---IA-----L-P-------------SSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALT 145 (407)
Q Consensus 90 ---~~-----~-~-------------~~~~~~~~~V~E~g-~~~l~~~~~~~~p~i~viTni~~dHl~~~~-t~e~i~~~ 145 (407)
.. . + +.+.++|++|+|+| +|++|.+++ +.|+++|||||+.||.+++| |+|+|+.+
T Consensus 107 ve~~~~~~~~~~~T~FE~~Ta~Af~~F~~~~vD~aIlEVGLGGRlDATNV-i~p~vsvIT~I~lDH~~~LG~tie~IA~E 185 (427)
T COG0285 107 VEEAAGSLDLISLTYFEVLTAMAFLYFAEAKVDVAILEVGLGGRLDATNV-IEPDVSVITSIGLDHTAFLGDTLESIARE 185 (427)
T ss_pred HHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEEEEeccccccccchhc-cCCceEEEcccChhHHHHhCCcHHHHHHH
Confidence 00 0 0 23556999999999 789999998 88999999999999999997 99999999
Q ss_pred HHHhhcccCCCceEEEeC-CChhhHHHH----hccccceEEeecCCCcccccccccceeEeccCCeeeeeeecccCCCCh
Q 015421 146 KCHLFSHMVNTKLGLLPF-GNQHLNEAI----KGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGR 220 (407)
Q Consensus 146 K~~i~~~~~~~~~~v~n~-dd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~ 220 (407)
|++|++ ++.++|+.. +.|.+.... ....++...++.+. ..... ...+....++ ......+|++|.
T Consensus 186 KAGI~k---~g~P~v~~~~~~p~a~~vi~~~a~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~---~~~~~~lp~l~~ 255 (427)
T COG0285 186 KAGIIK---AGKPAVIGEQQPPEALNVIAERAEELGAPLFVLGPDF--QVLEE--GNGFSFQGGG---GLLDLPLPLLGG 255 (427)
T ss_pred hhhhcc---CCCcEEECCCCCHHHHHHHHHHHHhcCCCeeecccch--hhccc--cceEEEecCC---eeeeeccccccc
Confidence 999999 455677766 456454443 22334444433221 11111 1223332211 222357898888
Q ss_pred h-HHHHHHHHHHHHHHHHcC--CCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC----CC
Q 015421 221 H-NYHNAAVAALSVLGLDIG--VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GH 293 (407)
Q Consensus 221 ~-~~~Nal~A~~~a~~~~lg--i~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~ 293 (407)
| |..||++|+ +++..++ ++.+.|.+||++.. ||||||++. .++..+|| .||||+|+.++.+.++ ..
T Consensus 256 ~~Q~~NAa~Ai--~al~~l~~~i~~~~i~~gl~~~~-wpGR~e~l~--~~p~i~lD--gAHNp~aa~~La~~l~~~~~~~ 328 (427)
T COG0285 256 HHQIENAALAI--AALEALGKEISEEAIRKGLANVD-WPGRLERLS--ENPLILLD--GAHNPHAARALAETLKTLFNDR 328 (427)
T ss_pred hhHHHHHHHHH--HHHHHhcccCCHHHHHHHHHhCc-CCceEEEec--CCCeEEEE--CCCCHHHHHHHHHHHHHHhccC
Confidence 8 999999999 7778776 58999999999999 999999994 56666666 7999999998877763 23
Q ss_pred c-EEEEECCCCCCCCCCCCcchHhhhhhccC-ccEEEEe------CCChHHHHHHHHhCCCCccccccccHHHHHHHHHH
Q 015421 294 K-CVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVITF------GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARR 365 (407)
Q Consensus 294 ~-~i~V~g~~~~~~~~~~~~~~~~~~~~l~~-~~~v~~~------g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~ 365 (407)
+ +++|+|...+|+. ..+...+.+ .+.++++ +.++..+.+.+...+ ... .++.++|++.+.+
T Consensus 329 ~~~~~v~g~l~dKd~-------~~~l~~L~~~~~~~~~~~~~~~ra~~~~~l~~~~~~~~---~~~-~~~~~~a~~~~~~ 397 (427)
T COG0285 329 PRLTLVFGMLKDKDI-------AGMLAALLPIVDEIYTTPLPWPRALDAEELLAFAGERG---GVE-LDDVAEALELALE 397 (427)
T ss_pred CceEEEEEeecCCCH-------HHHHHHhhccCcEEEEccCCCcccCCHHHHHHHHHhhc---CCc-cccHHHHHHHHHH
Confidence 3 7899999987753 345555443 3566665 233455555554332 111 6789999999988
Q ss_pred hcCCCCEEEEcCCCCCcccccChhh
Q 015421 366 MATNGDAIVLSPGCASFDEFRNFEH 390 (407)
Q Consensus 366 ~~~~gd~vL~~~G~~s~~~~~~~~~ 390 (407)
...++|.|||+ |||+.+.++.+
T Consensus 398 ~~~~~~~ilV~---GSly~~~ev~~ 419 (427)
T COG0285 398 KADEDDLVLVT---GSLYLAGEVLE 419 (427)
T ss_pred hcCCCCeEEEE---ecHHHHHHHHH
Confidence 77667899887 68887665544
No 39
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=100.00 E-value=6.7e-42 Score=338.57 Aligned_cols=327 Identities=18% Similarity=0.145 Sum_probs=223.9
Q ss_pred ceeeHHHHHHhhC---CCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeec--ccC----------Cccchhhhhhcc-
Q 015421 27 RVMSELDFAAQVI---PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVG--GNL----------GNPLSEAAFHCI- 90 (407)
Q Consensus 27 ~~l~~~~~~~~~~---~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~--g~~----------g~~~~~~~~~~~- 90 (407)
+-|.++..+.+.+ +++.++|+||||||||||++|++++|+.+|++++.. +++ |.+++...+...
T Consensus 30 ~~l~~~~~ll~~lg~p~~~~~~I~VtGTNGKgSt~~~l~~iL~~~G~~vG~~tSphl~~~~eri~i~g~~i~~~~~~~~~ 109 (416)
T PRK10846 30 LGLERVSQVAARLDLLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYRVGVYSSPHLVRYTERVRIQGQELPESAHTASF 109 (416)
T ss_pred CChHHHHHHHHHhCCCccCCCEEEEECCCChHHHHHHHHHHHHHcCCCceEECCCCCCCcceEEEECCEECCHHHHHHHH
Confidence 3466666666544 345789999999999999999999999999998543 321 444432221100
Q ss_pred -----------cC-----------CCCCCCCcEEEEEec-ccccccCCccccceEEEEecCChhhhccCC-CHHHHHHHH
Q 015421 91 -----------AL-----------PSSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTK 146 (407)
Q Consensus 91 -----------~~-----------~~~~~~~~~~V~E~g-~~~l~~~~~~~~p~i~viTni~~dHl~~~~-t~e~i~~~K 146 (407)
.+ .+.+.++|++|+|+| +|++|.++. ++|+++|||||++||+++|| |+|+|+++|
T Consensus 110 ~~~~~~~~~~~~t~fe~~t~~a~~~f~~~~vd~~VlEvglggrld~tn~-i~p~vaviTnI~~DHld~lG~t~e~ia~~K 188 (416)
T PRK10846 110 AEIEAARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNI-VDADVAVVTSIALDHTDWLGPDRESIGREK 188 (416)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCCCCchhhhc-cCCCEEEECCccHHHHHHhcCCHHHHHHHH
Confidence 00 013567899999999 789999887 78999999999999999998 899999999
Q ss_pred HHhhcccCCCceEEEeCCC-hh-hHHHHhccccceEEeecCCCcccccccccceeEeccCCeeeeeeecccCCCChhHHH
Q 015421 147 CHLFSHMVNTKLGLLPFGN-QH-LNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYH 224 (407)
Q Consensus 147 ~~i~~~~~~~~~~v~n~dd-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~ 224 (407)
++|++ +++.+|+|.+| +. ....+....+++..++.. +.+..+. ..+.+..... . ...++++ .||++
T Consensus 189 a~Iik---~~~~~V~~~~d~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~--~--~~~~~l~-~~~~~ 256 (416)
T PRK10846 189 AGIFR---AEKPAVVGEPDMPSTIADVAQEKGALLQRRGVD--WNYSVTD--HDWAFSDGDG--T--LENLPLP-NVPLP 256 (416)
T ss_pred Hhhhc---CCCeEEECCccHhHHHHHHHHHhCCcEEEecce--eeeeccC--ceEEEecCcc--c--cccCCcc-chHHH
Confidence 99998 35678998766 43 333444444444433321 1110000 1111111100 0 1135555 47999
Q ss_pred HHHHHHHHHHH--HHcCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhcc---C-CCcEEEE
Q 015421 225 NAAVAALSVLG--LDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL---K-GHKCVIL 298 (407)
Q Consensus 225 Nal~A~~~a~~--~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~---~-~~~~i~V 298 (407)
|+++|+ +++ ..++++.+.|.++|+++. +|||||++. ..+ .+|+|+ ||||++++++++.+ . ++|+++|
T Consensus 257 N~~~Ai--a~~~~~~~~i~~~~i~~~L~~~~-~~gR~e~~~--~~~-~iI~D~-AHNp~a~~~l~~~L~~~~~~~~ii~V 329 (416)
T PRK10846 257 NAATAL--AALRASGLEVSEQAIRDGIASAI-LPGRFQIVS--ESP-RVILDV-AHNPHAAEYLTGRLKALPKNGRVLAV 329 (416)
T ss_pred HHHHHH--HHHHHcCCCCCHHHHHHHHHhCC-CCceEEEEc--CCC-cEEEEC-CCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 999998 555 346799999999999998 999999984 333 466675 99999999985544 3 4588999
Q ss_pred ECCCCCCCCCCCCcchHhhhhhcc-CccEEEEe------CCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCC
Q 015421 299 LGGQAKVLNGQESNGFEKLIEPLN-HHRCVITF------GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGD 371 (407)
Q Consensus 299 ~g~~~~~~~~~~~~~~~~~~~~l~-~~~~v~~~------g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd 371 (407)
+|.+.+++ +......+. ..+.++++ |.++..+.+.+.. ...++++++|++.+.+.+++||
T Consensus 330 fg~~gdkd-------~~~~l~~L~~~~d~viv~~~~~~r~~~~~~l~~~~~~------~~~~~~~~~Ai~~a~~~a~~gD 396 (416)
T PRK10846 330 IGMLHDKD-------IAGTLACLKSVVDDWYCAPLEGPRGATAEQLAEHLGN------GKSFDSVAQAWDAAMADAKPED 396 (416)
T ss_pred EEeeCCCC-------HHHHHHHHhhhCCEEEEECCCCCCCCCHHHHHHHhhh------CcccCCHHHHHHHHHHhcCCCC
Confidence 99887653 223333333 24444332 4555666666542 2356889999999999999999
Q ss_pred EEEEcCCCCCcccccChh
Q 015421 372 AIVLSPGCASFDEFRNFE 389 (407)
Q Consensus 372 ~vL~~~G~~s~~~~~~~~ 389 (407)
+||++ |||+.+.++.
T Consensus 397 ~VLi~---GS~~~~~~~~ 411 (416)
T PRK10846 397 TVLVC---GSFHTVAHVM 411 (416)
T ss_pred EEEEE---CcHHHHHHHH
Confidence 99984 7888876663
No 40
>PLN02913 dihydrofolate synthetase
Probab=100.00 E-value=2.3e-41 Score=340.22 Aligned_cols=343 Identities=15% Similarity=0.176 Sum_probs=232.9
Q ss_pred eeHHHHHHhhC---CCCCcEEEEecCCChHhHHHHHHHHHHhcCCcee--ecccC------------Cccchhhhhhcc-
Q 015421 29 MSELDFAAQVI---PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF--VGGNL------------GNPLSEAAFHCI- 90 (407)
Q Consensus 29 l~~~~~~~~~~---~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~--~~g~~------------g~~~~~~~~~~~- 90 (407)
|.|+..+.+.+ ++++++|+||||||||||++||+++|+++|++++ |++++ |.|++...+...
T Consensus 58 L~r~~~ll~~LG~P~~~~~vIhVaGTNGKGSt~a~l~~iL~~aG~~vG~fTSPHl~~~~ERi~in~~g~~is~~~~~~~~ 137 (510)
T PLN02913 58 LGRMRRLMDRLGNPHSKFKAVHVAGTKGKGSTAAFLSNILRAQGYSVGCYTSPHLRSIRERISVGKLGKPVSTNTLNDLF 137 (510)
T ss_pred HHHHHHHHHHcCCchhhCcEEEEeCCCchHHHHHHHHHHHHhcCCCeEEECCCCCceeceEEEECCCCCcCCHHHHHHHH
Confidence 56677666554 2357899999999999999999999999999984 55552 577766643100
Q ss_pred -----------------cCC-----------CCCCCCcEEEEEec-ccccccCCcc--ccceEEEEecCChhhhccCC-C
Q 015421 91 -----------------ALP-----------SSKPKFQVAVVEVS-SYQMEIPNKY--FCPTVSVVLNLTPDHLERHK-T 138 (407)
Q Consensus 91 -----------------~~~-----------~~~~~~~~~V~E~g-~~~l~~~~~~--~~p~i~viTni~~dHl~~~~-t 138 (407)
.+. +.+.++|++|+|+| +|.+|.++.. .+|+++|||||+.||++++| |
T Consensus 138 ~~v~~~~~~~~~~~~~~~T~FE~~T~~A~~~F~~~~vD~aVlEvGlGGrlDaTNvi~~~~p~vsVITnIg~DH~~~LG~T 217 (510)
T PLN02913 138 HGIKPILDEAIQLENGSLTHFEVLTALAFKLFAQENVDIAVIEAGLGGARDATNVIDSSGLAASVITTIGEEHLAALGGS 217 (510)
T ss_pred HHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhCCCCEEEEEecCCCCcccccccCCCCCcEEEEccccHHHHhhhccc
Confidence 000 23578999999999 6789999873 23599999999999999998 9
Q ss_pred HHHHHHHHHHhhcccCCCceEEEeC-CChhhHH----HHhccccceEEeecC-CCccccc-c-cccceeEecc-----CC
Q 015421 139 MKNYALTKCHLFSHMVNTKLGLLPF-GNQHLNE----AIKGHRFNLAWIGAF-PGVKIDT-E-AKTASFEVPA-----VG 205 (407)
Q Consensus 139 ~e~i~~~K~~i~~~~~~~~~~v~n~-dd~~~~~----~~~~~~~~~~~~~~~-~~~~~~~-~-~~~~~~~~~~-----~~ 205 (407)
+|+|+++|++|++ ++..+|++. ..+.... .+...++++++++.. ..+.... . .....+.+.. .+
T Consensus 218 le~IA~eKagIik---~g~pvV~~~~~~~~~~~vi~~~a~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (510)
T PLN02913 218 LESIALAKSGIIK---QGRPVVLGGPFLPHIESILRDKASSMNSPVVSASDPGVRSSIKGIITDNGKPCQSCDIVIRVEK 294 (510)
T ss_pred HHHHHHHHhhhcc---CCCCEEECCCCCHHHHHHHHHHHHHhCCCEEEeccccccceeecccccCCceeEEecccccccc
Confidence 9999999999999 567888875 3343333 333345566555321 1111100 0 0111122110 00
Q ss_pred ---eeeeeeecccCCCChhHHHHHHHHHHHHHHHHc-----CCCHHHHHHHhhcCCCCCCceeEEeee------cCCEEE
Q 015421 206 ---VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI-----GVDVEALNSTIEILRTPPHRMQIVHRD------IQGVTW 271 (407)
Q Consensus 206 ---~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~l-----gi~~~~i~~~L~~~~~~~gR~e~~~~~------~~~~~i 271 (407)
.......+.++++|.||++|+++|+ +++..+ +++.+.|.++|+++. ||||||++... ..+..|
T Consensus 295 ~~~~~~~~~~~~l~L~G~hq~~Naa~Al--aa~~~L~~~~~~i~~~~I~~gL~~~~-~pGR~E~i~~~~~~~~~~~~~~v 371 (510)
T PLN02913 295 DDPLFIELSDVNLRMLGSHQLQNAVTAA--CAALCLRDQGWRISDASIRAGLENTN-LLGRSQFLTSKEAEVLGLPGATV 371 (510)
T ss_pred ccccccccccccCCCCCHHHHHHHHHHH--HHHHHHHhcCCCCCHHHHHHHHHhCC-CCCceEEeeccccccccCCCCEE
Confidence 0001112468899999999999999 666666 799999999999999 89999998411 024577
Q ss_pred EEcCCCCCHHHHHHHHhccC----CCcEEEEECCCCCCCCCCCCcchHhhhhhc-c--CccEEEEeC----------CCh
Q 015421 272 VDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQESNGFEKLIEPL-N--HHRCVITFG----------YSG 334 (407)
Q Consensus 272 idD~~a~np~s~~~al~~~~----~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l-~--~~~~v~~~g----------~~~ 334 (407)
|+|+ +|||+|++++++.+. ++|+++|+|++.|+ .+.++++.+ . ..|.++++. .++
T Consensus 372 IlDg-AHNp~s~~al~~~L~~~~~~~ki~~V~gml~DK-------d~~~~l~~l~~~~~~d~v~~~~~~~~~~~~r~~~~ 443 (510)
T PLN02913 372 LLDG-AHTKESAKALVDTIKTAFPEARLALVVAMASDK-------DHLAFASEFLSGLKPEAVFLTEADIAGGKSRSTSA 443 (510)
T ss_pred EEEC-CCCHHHHHHHHHHHHHhcCCCCEEEEEEccCCC-------CHHHHHHHHhcccCCCEEEEEcCCCCCCCCCCCCH
Confidence 8885 799999999988763 35788888888654 356676643 2 257676652 224
Q ss_pred HHHHHHHHhCCCCcccc--------ccccHHHHHHHHHHhc--CCCCEEEEcCCCCCcccccCh
Q 015421 335 VLIWKTLVNNGLSIPCF--------AVANMKDAVNHARRMA--TNGDAIVLSPGCASFDEFRNF 388 (407)
Q Consensus 335 ~~~~~~l~~~~~~~~~~--------~~~~~~~a~~~a~~~~--~~gd~vL~~~G~~s~~~~~~~ 388 (407)
..+.+.+++......+. .+++..+|++.+.+.. .++|.|+++ |||+.+.+.
T Consensus 444 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~v~---GSlylv~~v 504 (510)
T PLN02913 444 SALKEAWIKAAPELGIETLLAENNSLLKSLVDASAILRKARTLDPSSVVCVT---GSLHIVSAV 504 (510)
T ss_pred HHHHHHHHHhccccCceeeccccccccCCHHHHHHHHHHhcccCCCCEEEEe---CcHHHHHHH
Confidence 55666554321111122 3788999999988766 467888886 688877665
No 41
>PLN02881 tetrahydrofolylpolyglutamate synthase
Probab=100.00 E-value=4.6e-36 Score=297.11 Aligned_cols=329 Identities=17% Similarity=0.148 Sum_probs=221.0
Q ss_pred eeeHHHHHHhhC---C--CCCcEEEEecCCChHhHHHHHHHHHHhcCCcee--eccc----------CCccchhhhhh--
Q 015421 28 VMSELDFAAQVI---P--RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF--VGGN----------LGNPLSEAAFH-- 88 (407)
Q Consensus 28 ~l~~~~~~~~~~---~--~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~--~~g~----------~g~~~~~~~~~-- 88 (407)
-|.++..+.+.+ + +++++|+|||||||||||+|+.++|+++|++++ ++++ -|.|++...+.
T Consensus 41 ~L~rm~~~L~~LG~p~~~~~l~vIhVaGTnGKGSt~a~l~siL~~~G~rvGl~tSPhL~~~rERiring~~Is~e~f~~~ 120 (530)
T PLN02881 41 QFDLLFDYLKILELEEAISRLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGVDISEEKFLRY 120 (530)
T ss_pred ChHHHHHHHHHcCCCchhhcCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEECCCccCcceeEEEECCEecCHHHHHHH
Confidence 356666555443 2 466899999999999999999999999999985 4444 25677663221
Q ss_pred ---------ccc-C----C-------------CCCCCCcEEEEEec-ccccccCCccccceEEEEecCChhhhccCC-CH
Q 015421 89 ---------CIA-L----P-------------SSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TM 139 (407)
Q Consensus 89 ---------~~~-~----~-------------~~~~~~~~~V~E~g-~~~l~~~~~~~~p~i~viTni~~dHl~~~~-t~ 139 (407)
... . + +...++|++|+|+| +|++|.++.+.+|+++|||||+.||+++|| |+
T Consensus 121 f~~v~~~l~~~~~~~~~~pt~Fe~lTlla~~~F~~~~vD~aVlEvGlgGr~DaTnvi~~p~v~vITnIg~DH~~~LG~Tl 200 (530)
T PLN02881 121 FWWCWDRLKEKTTEDLPMPAYFRFLTLLAFKIFSAEQVDVAILEVGLGGRLDATNVVQKPVVCGITSLGYDHMEILGDTL 200 (530)
T ss_pred HHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEEEEEecCCCCchhhhccCCCCEEEEccccHHHHHhhcCCH
Confidence 110 0 1 12567899999999 789999987558999999999999999998 99
Q ss_pred HHHHHHHHHhhcccCCCceEEEeCCChhhHHHH----hccccceEEeecCCCcccccccccceeEeccCCeeeeeeeccc
Q 015421 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAI----KGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNM 215 (407)
Q Consensus 140 e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 215 (407)
|+|+.+|++|++ ++..+|+..+++....+. ...+.+...++... .+.+ ....+
T Consensus 201 e~IA~~KagI~k---~g~p~vt~~q~~ea~~vl~~~A~e~~a~l~~v~~~~-----------~~~~---------~~~~l 257 (530)
T PLN02881 201 GKIAGEKAGIFK---PGVPAFTVPQPDEAMRVLEERASELGVPLQVVEPLD-----------SYGL---------SGLKL 257 (530)
T ss_pred HHHHHHHHHHHh---cCCCEEEeCCChHHHHHHHHHHHHhCCcEEEecccc-----------ccee---------cccCC
Confidence 999999999998 456677766666554443 33334443332110 0111 11368
Q ss_pred CCCChhHHHHHHHHHHHHHHHHc---------------CCCHHHHHHHhhcCCCCCCceeEEee------ecCCEEEEEc
Q 015421 216 KVMGRHNYHNAAVAALSVLGLDI---------------GVDVEALNSTIEILRTPPHRMQIVHR------DIQGVTWVDD 274 (407)
Q Consensus 216 ~~~G~~~~~Nal~A~~~a~~~~l---------------gi~~~~i~~~L~~~~~~~gR~e~~~~------~~~~~~iidD 274 (407)
++.|.||..|+++|+ +++..+ ...++.+.+||+++. ||||||++.. ..++..++.|
T Consensus 258 ~L~G~~Q~~NaalAl--a~~~~~l~~~~~~~~~~~~~~~~l~~~i~~GL~~~~-wpGR~e~v~~~~~~~~~~~~~~~~LD 334 (530)
T PLN02881 258 GLAGEHQYLNAGLAV--ALCSTWLQRTGHEEFEALLQAGTLPEQFIKGLSTAS-LQGRAQVVPDSYINSEDSGDLVFYLD 334 (530)
T ss_pred CCCChhHHHhHHHHH--HHHHHHHhhccccccccccccCCCHHHHHHHHHhCC-CCceEEEeccccccccCCCCCeEEEE
Confidence 899999999999999 444432 234568999999999 9999999841 0134456666
Q ss_pred CCCCCHHHHHHHHhccC------------------------------CCcEEEEECCCCCCCCCCCCcchHhhhhhcc--
Q 015421 275 SKATNLEATCTGLMDLK------------------------------GHKCVILLGGQAKVLNGQESNGFEKLIEPLN-- 322 (407)
Q Consensus 275 ~~a~np~s~~~al~~~~------------------------------~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~-- 322 (407)
+||||+|+.++.+.+. ..++++|||++.+++... .+..+...+.
T Consensus 335 -GAHNp~s~~~l~~wf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvF~~~~dkD~~~---lL~~L~~~~~~~ 410 (530)
T PLN02881 335 -GAHSPESMEACARWFSSAIKGDEQSPGSGYGPHGGGGKSEDTESNKISEQILLFNCMSVRDPQL---LLPPLANTCASN 410 (530)
T ss_pred -CCCCHHHHHHHHHHHHHHhcccccCCcccccccccccccccccccCCCCEEEEEcCCCCCCHHH---HHHHHHHHHHhc
Confidence 6999999998877651 126899999998775432 3334444332
Q ss_pred --CccEEEEeCCC---------------h------HHHHHHHHhCC--C----------------------Ccccccccc
Q 015421 323 --HHRCVITFGYS---------------G------VLIWKTLVNNG--L----------------------SIPCFAVAN 355 (407)
Q Consensus 323 --~~~~v~~~g~~---------------~------~~~~~~l~~~~--~----------------------~~~~~~~~~ 355 (407)
.+|.++++-.. . ..+++..++.. . .....++++
T Consensus 411 ~~~f~~aiF~~n~~~~~~~~~~~~~~~~~~~l~~q~~l~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s 490 (530)
T PLN02881 411 GVPFKKALFVPNISVYNKVGSGLPVDDPQVDLSWQFTLQRVWESLIRGKAGAPADAVCEESASSGLNDGKSDENSAVFPS 490 (530)
T ss_pred CCCCCeEEEcCCccccCCCcccCCCcchhhhHHHHHHHHHHHHHhccccccccccccccccccccccCCCCCCceeEecC
Confidence 24554443111 0 12333332221 0 124567899
Q ss_pred HHHHHHHHHHhcCCCC----EEEEcCCCCCcccccChh
Q 015421 356 MKDAVNHARRMATNGD----AIVLSPGCASFDEFRNFE 389 (407)
Q Consensus 356 ~~~a~~~a~~~~~~gd----~vL~~~G~~s~~~~~~~~ 389 (407)
.++|++++.....+.. -|||+ ||++.+.++.
T Consensus 491 i~~Ai~~~r~~~~~~~~~~~~vlVT---GSlhLvG~~l 525 (530)
T PLN02881 491 LPLAIKWLRDCARENPSLRFQVLVT---GSLHLVGDVL 525 (530)
T ss_pred HHHHHHHHHHHhhhCCCcceEEEEe---cchhhhhHHH
Confidence 9999999988765332 37776 6788766543
No 42
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.97 E-value=7.6e-32 Score=281.60 Aligned_cols=250 Identities=18% Similarity=0.194 Sum_probs=171.8
Q ss_pred ccccCcCc-HHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccchhhh
Q 015421 8 LLEFQLKA-TGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86 (407)
Q Consensus 8 ~~~~~~~~-p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~ 86 (407)
+|.++..+ |.+..+++-+.+++..+..... +.+.|+|+||||||||||++|++++|+..|++++..++.|..+....
T Consensus 446 sPgi~~~~~p~~g~~r~v~~~Iid~L~~~~~--~~ripiIaVTGTnGKTTTt~lla~iL~~~G~~vg~~~t~G~~i~~~~ 523 (727)
T PRK14016 446 APGLRMHLAPSEGKPRNVGEAIVDMLFPEGD--DGRIPIVAVTGTNGKTTTTRLIAHILKLSGKRVGMTTTDGVYIDGRL 523 (727)
T ss_pred CcchhhccCCCCCcchhHHHHHHHHhcccCC--CCceeEEEEECCCCchHHHHHHHHHHHHcCCeEEEECCCCEEECCEE
Confidence 34444322 4444445444455554322221 13679999999999999999999999999999877666665442211
Q ss_pred hhcc--cC------CCCCCCCcEEEEEecccccccCC-ccccceEEEEecCChhhhccCC--CHHHHHHHHHHhhcccCC
Q 015421 87 FHCI--AL------PSSKPKFQVAVVEVSSYQMEIPN-KYFCPTVSVVLNLTPDHLERHK--TMKNYALTKCHLFSHMVN 155 (407)
Q Consensus 87 ~~~~--~~------~~~~~~~~~~V~E~g~~~l~~~~-~~~~p~i~viTni~~dHl~~~~--t~e~i~~~K~~i~~~~~~ 155 (407)
+..- +. -..+++++++|+|+|++++.... .+.+|+++|||||++||+++++ |+|+|+++|+.+++.+++
T Consensus 524 i~~gd~t~p~s~~~ll~~~~~d~aVlE~s~~~il~~gl~~~~pdvaVvTNI~~DHL~~~~~~t~E~~~~~K~~i~~~v~~ 603 (727)
T PRK14016 524 IDKGDCTGPKSARRVLMNPDVEAAVLETARGGILREGLAYDRCDVGVVTNIGEDHLGLGGINTLEDLAKVKRVVVEAVKP 603 (727)
T ss_pred eccccccCHHHHHHHhcCCCCCEEEEEcCCCchhhcCCcccccCeEEEcCCCHHHhhccCCCCHHHHHHHHHHHHhhhCC
Confidence 1000 00 00245678999999988774322 3468999999999999999874 999999999999998888
Q ss_pred CceEEEeCCChhhHHHHhccccceEEeecCCCccc-----ccccc-----cceeEeccCCeeee---eeecccCCCC--h
Q 015421 156 TKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKI-----DTEAK-----TASFEVPAVGVVSQ---LQLHNMKVMG--R 220 (407)
Q Consensus 156 ~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-----~~~~~~~~~~~~~~---~~~~~l~~~G--~ 220 (407)
+|.+|+|.||+.+..++.....++++|+.+.+..+ ..... ...+.+..++.... +..+.+.++| .
T Consensus 604 ~g~aVlNaDD~~~~~~~~~~~~~vi~fs~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~i~l~~~G~~~ 683 (727)
T PRK14016 604 DGYAVLNADDPMVAAMAERCKGKVIFFSMDPDNPVIAEHRAQGGRAVYVEGDYIVLAEGGWEIRIISLADIPLTLGGKAG 683 (727)
T ss_pred CCeEEEcCCCHHHHHHHHhCCCcEEEEeCCCCChHHHHHHHhCCceEEEeCCEEEEEeCCcceeeccccccceecCCcch
Confidence 99999999999998887666667888875432111 00000 00111111111111 1122343366 6
Q ss_pred hHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCC----CCCceeE
Q 015421 221 HNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT----PPHRMQI 261 (407)
Q Consensus 221 ~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~----~~gR~e~ 261 (407)
||++|+++|+ ++++.+|++++.|.++|++|.+ .||||+.
T Consensus 684 hnv~NalAAi--Aaa~~lGi~~~~I~~~L~sF~~~~~~~pGR~n~ 726 (727)
T PRK14016 684 FNIENALAAI--AAAWALGIDIELIRAGLRTFVSDAAQAPGRFNL 726 (727)
T ss_pred hhHHHHHHHH--HHHHHcCCCHHHHHHHHHhcCCCccCCCccccc
Confidence 9999999999 8999999999999999999986 9999985
No 43
>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....
Probab=99.97 E-value=4.7e-31 Score=233.75 Aligned_cols=176 Identities=25% Similarity=0.349 Sum_probs=130.3
Q ss_pred EecCCChHhHHHHHHHHHHhcCCceeeccc----CCccchhhhhhcccCCCCCCCCcEEEEEecccccc--cCCccccce
Q 015421 48 VTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME--IPNKYFCPT 121 (407)
Q Consensus 48 VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~----~g~~~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~--~~~~~~~p~ 121 (407)
||||||||||++||+++|+..|..+++.|+ +|.+....... +.+.+++|+|+|++++. .+...++|+
T Consensus 1 ITGT~GKTTTt~ml~~iL~~~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~V~E~~~~~~~~~~l~~~~~p~ 73 (188)
T PF08245_consen 1 ITGTNGKTTTTRMLAHILSAAGKVVGTIGNTNNQIGLPLLLLNAR-------EGGADIAVLEVSEGGLGDERLSFLLKPD 73 (188)
T ss_dssp EESSSSHHHHHHHHHHHHHHTTEEEEEESSCHHHHHHHHHHHHHH-------HTTSSEEEEEESSSCCCTSTTSGGSBES
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCcccccccccchHHHHHHHhhhc-------ccccceeeeeccCCccccceeeeeeehh
Confidence 899999999999999999999998887776 44444333321 35789999999987443 233337999
Q ss_pred EEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeCCChhhHHHHhccccceEEeecCCCccccc-----cccc
Q 015421 122 VSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT-----EAKT 196 (407)
Q Consensus 122 i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 196 (407)
++|||||++||+++|+|+++|+++|.++++.+++++.+|+|.|||.+.......+.++++|+.+....+.. ....
T Consensus 74 i~viTni~~dH~~~~~s~~~~~~~k~~~~~~~~~~~~~v~n~dd~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~ 153 (188)
T PF08245_consen 74 IAVITNIGPDHLDRFGSIEEYAEAKAKIFRGLKPGGVAVLNADDPELAEIAANSKCKVITFGLDNSADIRASNISYSEEG 153 (188)
T ss_dssp EEEE----SSSHCCTSSHHHHHHHHHGGHTTTSTTSEEEEETTSHHHHHHHHHHTTTEEEEESSSSSEEEEEEEEEETTE
T ss_pred eeeeceecccccccCCCHHHHHHHHHhhhhhcccceEEEecCCCHHHHHHHHhcCCcEEEeccCcccceeeeeEEEecCC
Confidence 99999999999999999999999999999999889999999999988887777777899999875442211 1111
Q ss_pred ceeEec-cCCeeeeeeecccCCCChhHHHHHHHHHHHHHH
Q 015421 197 ASFEVP-AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLG 235 (407)
Q Consensus 197 ~~~~~~-~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~ 235 (407)
..+.+. ..+... .+.++++|.||++|+++|+ ++|
T Consensus 154 ~~~~i~~~~~~~~---~~~~~l~G~hn~~NalaA~--a~a 188 (188)
T PF08245_consen 154 GRFRIISYNGEEF---EIELPLPGKHNVENALAAI--AAA 188 (188)
T ss_dssp EEEEEEEETTEEE---EEEESSSSHHHHHHHHHHH--HHH
T ss_pred cEEEEEEecCceE---EEEecCCCHHHHHHHHHHH--HhC
Confidence 122111 122222 2579999999999999998 554
No 44
>KOG2525 consensus Folylpolyglutamate synthase [Coenzyme transport and metabolism]
Probab=99.97 E-value=1.7e-29 Score=240.81 Aligned_cols=242 Identities=23% Similarity=0.286 Sum_probs=174.0
Q ss_pred CCCcEEEEecCCChHhHHHHHHHHHHhcCCce--eecccC----------Cccchhhhhhcc----------------c-
Q 015421 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA--FVGGNL----------GNPLSEAAFHCI----------------A- 91 (407)
Q Consensus 41 ~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~--~~~g~~----------g~~~~~~~~~~~----------------~- 91 (407)
.++.+||||||+||+|||.++.+||++.|+++ ++++++ |.|++...+... .
T Consensus 70 ~~l~iIHVAGTkGKGStcaF~~SILr~~g~rtG~yTSPHLl~vrErIriNGqpIS~e~F~~~f~~v~~~lk~~~~~~~~~ 149 (496)
T KOG2525|consen 70 NSLNIIHVAGTKGKGSTCAFTESILRQQGLRTGFYTSPHLLSVRERIRINGQPISEEKFTKYFWEVYERLKSTKLKEVSM 149 (496)
T ss_pred hheeEEEEecCCCCcchHHHHHHHHHhcccccccccChhhcchhheEEECCEECCHHHHHHHHHHHHHHHHHhhccccCC
Confidence 46889999999999999999999999999998 466663 778877644210 0
Q ss_pred ---C---------CCCCCCCcEEEEEec-ccccccCCccccceEEEEecCChhhhccCC-CHHHHHHHHHHhhcccCCCc
Q 015421 92 ---L---------PSSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTK 157 (407)
Q Consensus 92 ---~---------~~~~~~~~~~V~E~g-~~~l~~~~~~~~p~i~viTni~~dHl~~~~-t~e~i~~~K~~i~~~~~~~~ 157 (407)
+ -+...++|+||+|+| +|++|.++++-+|-++.||+||.||++++| |+++|+.+|++||+. +.
T Consensus 150 p~yF~fLT~lAF~~F~~enVdvaViEvGlGG~~DaTNvI~kpvvcgITslG~DH~~~LG~tL~eIA~eKAGIfK~---gv 226 (496)
T KOG2525|consen 150 PTYFEFLTLLAFHVFVKENVDVAVIEVGLGGELDATNVIEKPVVCGITSLGLDHTSFLGNTLSEIAWEKAGIFKE---GV 226 (496)
T ss_pred CchhhhhHhhhheeeeecCCcEEEEEeccccccccccccccceEEEEeecCCchHHHHhhHHHHHHHHhcccccc---CC
Confidence 0 123678999999999 789999998678999999999999999997 999999999999983 44
Q ss_pred eEEEeCCChhhHHHHhccccc--eEEeecCCCcccccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHH
Q 015421 158 LGLLPFGNQHLNEAIKGHRFN--LAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLG 235 (407)
Q Consensus 158 ~~v~n~dd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~ 235 (407)
.++.....+.+....+..... +.-+-..+ . ....+....+.+.|.||..|+.+|+..+-+
T Consensus 227 paft~~q~~e~~nvL~~ra~e~~~~L~~v~p-----------------~-~~~~ls~~~lgl~g~hq~~na~lA~~L~~~ 288 (496)
T KOG2525|consen 227 PAFTVPQPPEALNVLKERASELGVPLFVVPP-----------------L-EAYELSGVNLGLIGTHQWSNASLAVQLASE 288 (496)
T ss_pred ceEEcCCcHHHHHHHHHHHHhcCCCceecCC-----------------c-hhhhhcCCcccccccchhhhhHHHHHHHHH
Confidence 555555666666655432111 10000000 0 000011124778899999999999853333
Q ss_pred HH-------c--------C--CCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC-------
Q 015421 236 LD-------I--------G--VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK------- 291 (407)
Q Consensus 236 ~~-------l--------g--i~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~------- 291 (407)
+. . + +|+ ....||+++. ||||.|++. ..++.+++.| +|||++||+++.+.+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~i~~-~~l~GL~~~~-wPGR~qil~-~~~~~~~llD-GAHt~eSaea~~~w~~~~~~~~~ 364 (496)
T KOG2525|consen 289 WLIQNGRVAEGVLDALQTSGLIPP-AFLSGLASTD-WPGRLQILE-YGRGVTWLLD-GAHTKESAEACAKWFRKAVRGLK 364 (496)
T ss_pred HHHhcCcccccCCCccccccCCCH-HHhcchhhcc-CCCceEEEe-cCCCcEEEec-CCCCHHHHHHHHHHHHHHhccCC
Confidence 32 0 1 444 4456999999 999999996 3467778888 6999999999876652
Q ss_pred CCc-EEEEECCCCCCCC
Q 015421 292 GHK-CVILLGGQAKVLN 307 (407)
Q Consensus 292 ~~~-~i~V~g~~~~~~~ 307 (407)
+.+ +|++|.++.+++.
T Consensus 365 ~~~~~illfn~t~~~d~ 381 (496)
T KOG2525|consen 365 KLTSLILLFNCTSDRDP 381 (496)
T ss_pred CccceEEEEEecCCcch
Confidence 222 5899998887654
No 45
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=99.27 E-value=5.6e-12 Score=97.64 Aligned_cols=77 Identities=23% Similarity=0.272 Sum_probs=59.2
Q ss_pred CCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhcc----CCCcEEEEECCCCCCCCCCCCcchHhhhhhccC-ccEEEE
Q 015421 255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL----KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVIT 329 (407)
Q Consensus 255 ~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~----~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~-~~~v~~ 329 (407)
||||||++. ..+++.+|+| |||||+|++++++.+ +.+++++|+|.+.++|..+. ..+..+++.+.. .+.+++
T Consensus 1 vpgR~e~v~-~~~~~~vi~D-~ahNp~s~~a~l~~l~~~~~~~~~i~V~G~~~d~g~~~~-~~~~~~~~~~~~~~d~vi~ 77 (91)
T PF02875_consen 1 VPGRMEVVR-EPNGPTVIDD-YAHNPDSIRALLEALKELYPKGRIIAVFGAMGDLGSKDK-DFHEEIGELAAQLADVVIL 77 (91)
T ss_dssp ETTSSEEEE-EETTEEEEEE-T--SHHHHHHHHHHHHHHCTTSEEEEEEEEBTT-HTSHH-HCHHHHHHHHTTCSSEEEE
T ss_pred CCCCcEEEe-eCCCcEEEEE-CCCCHHHHHHHHHHHHHhccCCcEEEEEccccccccccH-HHHHHHHHHHHhcCCEEEE
Confidence 699999996 3578999999 799999999999887 46899999999988665442 356678777775 677888
Q ss_pred eCCCh
Q 015421 330 FGYSG 334 (407)
Q Consensus 330 ~g~~~ 334 (407)
++..+
T Consensus 78 ~~~~~ 82 (91)
T PF02875_consen 78 TGDNP 82 (91)
T ss_dssp ETSBT
T ss_pred cCCCC
Confidence 87654
No 46
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.92 E-value=0.054 Score=50.35 Aligned_cols=117 Identities=18% Similarity=0.272 Sum_probs=70.9
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHHHhcCCceee----------ccc-CCccchhhhhh---cccCC------------
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV----------GGN-LGNPLSEAAFH---CIALP------------ 93 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~~----------~g~-~g~~~~~~~~~---~~~~~------------ 93 (407)
+..+|||||+ .||||...-|..-|.+.|.++.. +|+ +|.-+-...+. ..+.+
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS 129 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS 129 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence 5679999998 57999999999999999998632 222 22221111111 00000
Q ss_pred ---------CCCCCCcEEEEEecc-cccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeC
Q 015421 94 ---------SSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163 (407)
Q Consensus 94 ---------~~~~~~~~~V~E~g~-~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~ 163 (407)
....++|+.++|+-+ |+-|..-. --.|+.+++-+- +.=+++.-.|.++++- ...+|+|.
T Consensus 130 ~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~-~~aDt~~~v~~p-------g~GD~~Q~iK~GimEi---aDi~vINK 198 (323)
T COG1703 130 RATREAIKLLDAAGYDVIIVETVGVGQSEVDIA-NMADTFLVVMIP-------GAGDDLQGIKAGIMEI---ADIIVINK 198 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCcchhHHh-hhcceEEEEecC-------CCCcHHHHHHhhhhhh---hheeeEec
Confidence 013468999999974 66553211 123555555441 1224456778888773 56899999
Q ss_pred CChhhH
Q 015421 164 GNQHLN 169 (407)
Q Consensus 164 dd~~~~ 169 (407)
.|..-.
T Consensus 199 aD~~~A 204 (323)
T COG1703 199 ADRKGA 204 (323)
T ss_pred cChhhH
Confidence 885443
No 47
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=94.89 E-value=0.13 Score=41.13 Aligned_cols=98 Identities=16% Similarity=0.116 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHhccC----CCcEEEEECCCC-CCCCCC--CCcchHhhhhhccCccEEEEeCCChHHHHHHHHhCCCC-c
Q 015421 277 ATNLEATCTGLMDLK----GHKCVILLGGQA-KVLNGQ--ESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVNNGLS-I 348 (407)
Q Consensus 277 a~np~s~~~al~~~~----~~~~i~V~g~~~-~~~~~~--~~~~~~~~~~~l~~~~~v~~~g~~~~~~~~~l~~~~~~-~ 348 (407)
..||.++.++++.+. ++.+++++.+.. |..+.| ....++.+.+. +...+++.|..+.+++-+|+-.|+. .
T Consensus 2 vKNP~G~n~~l~~i~~~~~~~~~~~~lNd~~aDG~DvSWiWDvdFE~L~~~--~i~~viv~G~Ra~DmalRLkyAGv~~~ 79 (113)
T PF08353_consen 2 VKNPAGFNEVLDMIASDPGPKSVLIALNDNYADGRDVSWIWDVDFEKLADP--NIKQVIVSGTRAEDMALRLKYAGVDEE 79 (113)
T ss_pred CcCcHHHHHHHHHHHhCCCCceEEEEecCCCCCCccceEEeecCHHHHhcC--CCCEEEEEeeeHHHHHhHeeecCcchH
Confidence 369999999999882 345556666442 222222 11123333211 2578999999999999999888875 3
Q ss_pred cccccccHHHHHHHHHHhcCCCCEEEEc
Q 015421 349 PCFAVANMKDAVNHARRMATNGDAIVLS 376 (407)
Q Consensus 349 ~~~~~~~~~~a~~~a~~~~~~gd~vL~~ 376 (407)
++...+|.++|++.+.....+++.+.+.
T Consensus 80 ~i~v~~d~~~a~~~~~~~~~~~~~~yil 107 (113)
T PF08353_consen 80 KIIVEEDLEEALDAFLIKSDPTDKVYIL 107 (113)
T ss_pred HeEecCCHHHHHHHHHHhcCCCCcEEEE
Confidence 4667899999999966666677766654
No 48
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.39 E-value=2.5 Score=40.64 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=28.4
Q ss_pred CCCcEEEEecCC--ChHhHHHHHHHHHHhcCCcee
Q 015421 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 41 ~~~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~~ 73 (407)
.+..+|+|+|+. ||||.+..+...|+..|.++.
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~ 88 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVA 88 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 356699999986 799999999999999998874
No 49
>PRK15453 phosphoribulokinase; Provisional
Probab=91.06 E-value=0.31 Score=45.44 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=24.5
Q ss_pred CCCcEEEEecCC--ChHhHHHHHHHHHHhcC
Q 015421 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLG 69 (407)
Q Consensus 41 ~~~~~I~VTGTn--GKTTt~~~l~~iL~~~g 69 (407)
++.++|+|||+. ||||++..++++|+..+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~ 33 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRREN 33 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 467899999985 79999999999997544
No 50
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=90.87 E-value=1.4 Score=33.15 Aligned_cols=28 Identities=29% Similarity=0.442 Sum_probs=23.5
Q ss_pred EEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421 46 LAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 46 I~VTGT--nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
|.++|. .||||++..++..|++.|+++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~ 31 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVL 31 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 556655 6999999999999999988773
No 51
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=90.42 E-value=0.33 Score=44.03 Aligned_cols=30 Identities=20% Similarity=0.465 Sum_probs=27.6
Q ss_pred EEEEecCCChHhHHHHHHHHHHhcCCceee
Q 015421 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFV 74 (407)
Q Consensus 45 ~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~ 74 (407)
+|+|+|.-||||+..-|+.-|+..|+++.+
T Consensus 1 vi~~vG~gGKTtl~~~l~~~~~~~g~~v~~ 30 (232)
T TIGR03172 1 VIAFVGAGGKTSTMFWLAAEYRKEGYRVLV 30 (232)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 589999999999999999999999998853
No 52
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=90.30 E-value=0.8 Score=39.06 Aligned_cols=39 Identities=23% Similarity=0.321 Sum_probs=32.6
Q ss_pred CcEEEEecC--CChHhHHHHHHHHHHhcCCceeecccCCcc
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~~~g~~g~~ 81 (407)
+++++|+|. .||||..+=|-..|++.|+++.+.-+.+..
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~ 42 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHHD 42 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCCC
Confidence 589999997 599999999999999999998765554443
No 53
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=89.83 E-value=0.45 Score=44.17 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=24.9
Q ss_pred cEEEEe--cCCChHhHHHHHHHHHHhcCCcee
Q 015421 44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 44 ~~I~VT--GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
++|+|. |-.||||++.-|++.|.+.|+++.
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVl 33 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVM 33 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEE
Confidence 344444 889999999999999999998874
No 54
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=88.31 E-value=0.6 Score=41.73 Aligned_cols=28 Identities=29% Similarity=0.378 Sum_probs=24.0
Q ss_pred EEEEe--cCCChHhHHHHHHHHHHhcCCce
Q 015421 45 ILAVT--GTNGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 45 ~I~VT--GTnGKTTt~~~l~~iL~~~g~~~ 72 (407)
+|+|+ |-.||||++.-|++.|.+.|+++
T Consensus 2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rv 31 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKV 31 (212)
T ss_pred EEEEECCCcCcHHHHHHHHHHHHHHCCCcE
Confidence 45565 67899999999999999999876
No 55
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=88.05 E-value=0.62 Score=43.46 Aligned_cols=30 Identities=27% Similarity=0.387 Sum_probs=26.2
Q ss_pred cEEEEe--cCCChHhHHHHHHHHHHhcCCcee
Q 015421 44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 44 ~~I~VT--GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
++|+|+ |=.|||||+.-|+..|.+.|+++.
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVl 33 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKIL 33 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeE
Confidence 567777 678999999999999999999884
No 56
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=87.08 E-value=0.65 Score=40.91 Aligned_cols=27 Identities=37% Similarity=0.664 Sum_probs=23.7
Q ss_pred EEEEec--CCChHhHHHHHHHHHHhcCCc
Q 015421 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIE 71 (407)
Q Consensus 45 ~I~VTG--TnGKTTt~~~l~~iL~~~g~~ 71 (407)
+|+|+| ..||||++..|...|.+.|..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~ 29 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIP 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcC
Confidence 688997 479999999999999988765
No 57
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=86.99 E-value=0.79 Score=42.79 Aligned_cols=30 Identities=27% Similarity=0.306 Sum_probs=25.6
Q ss_pred cEEEEe--cCCChHhHHHHHHHHHHhcCCcee
Q 015421 44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 44 ~~I~VT--GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
++|+|+ |-.|||||+.-|++.|.+.|+++.
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVL 33 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVM 33 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEE
Confidence 466776 667899999999999999999874
No 58
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=86.92 E-value=0.94 Score=40.80 Aligned_cols=30 Identities=37% Similarity=0.524 Sum_probs=27.5
Q ss_pred CcEEEEecCC---ChHhHHHHHHHHHHhcCCce
Q 015421 43 IKILAVTGTN---GKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 43 ~~~I~VTGTn---GKTTt~~~l~~iL~~~g~~~ 72 (407)
++.+.||||. |||.++..|.+.|+++|+++
T Consensus 2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~ 34 (223)
T COG0132 2 MKRFFVTGTDTGVGKTVVSAALAQALKQQGYSV 34 (223)
T ss_pred CceEEEEeCCCCccHHHHHHHHHHHHHhCCCee
Confidence 4689999995 99999999999999999886
No 59
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=86.75 E-value=1.2 Score=39.37 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=27.0
Q ss_pred CCCcEEEEec---CCChHhHHHHHHHHHHhcCCce
Q 015421 41 RSIKILAVTG---TNGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 41 ~~~~~I~VTG---TnGKTTt~~~l~~iL~~~g~~~ 72 (407)
.+.++|+|++ -.||||++..|+..|...|.++
T Consensus 15 ~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rV 49 (204)
T TIGR01007 15 AEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKT 49 (204)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeE
Confidence 3578899984 4579999999999999998776
No 60
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=86.66 E-value=0.57 Score=40.14 Aligned_cols=25 Identities=40% Similarity=0.678 Sum_probs=19.7
Q ss_pred cEEEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 44 ~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~ 72 (407)
+.|+|||| .||||+|..|+ ..|+++
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~----~lg~~~ 27 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR----ELGYKV 27 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH----HhCCce
Confidence 36999999 57999999887 446665
No 61
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=86.61 E-value=1.3 Score=41.31 Aligned_cols=32 Identities=25% Similarity=0.329 Sum_probs=28.5
Q ss_pred CCCcEEEEe---cCCChHhHHHHHHHHHHhcCCce
Q 015421 41 RSIKILAVT---GTNGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 41 ~~~~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~ 72 (407)
+..++|+|| |-.||||++..|+..|...|.++
T Consensus 101 ~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~V 135 (274)
T TIGR03029 101 EGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKT 135 (274)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 467899999 77899999999999999998877
No 62
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=86.61 E-value=1 Score=41.00 Aligned_cols=30 Identities=27% Similarity=0.295 Sum_probs=25.8
Q ss_pred cEEEEe---cCCChHhHHHHHHHHHHhcCCcee
Q 015421 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 44 ~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
++|+|+ |-.||||++..|+..|...|+++.
T Consensus 2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~Vl 34 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVA 34 (231)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEE
Confidence 567776 677899999999999999998874
No 63
>PRK10037 cell division protein; Provisional
Probab=86.54 E-value=0.87 Score=41.87 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=25.2
Q ss_pred cEEEEe---cCCChHhHHHHHHHHHHhcCCce
Q 015421 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 44 ~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~ 72 (407)
++|+|. |=.||||++.-|++.|.+.|++|
T Consensus 2 ~~iav~n~KGGvGKTT~a~nLA~~La~~G~rV 33 (250)
T PRK10037 2 AILGLQGVRGGVGTTSITAALAWSLQMLGENV 33 (250)
T ss_pred cEEEEecCCCCccHHHHHHHHHHHHHhcCCcE
Confidence 467777 77899999999999999999776
No 64
>COG2403 Predicted GTPase [General function prediction only]
Probab=86.38 E-value=0.8 Score=43.91 Aligned_cols=31 Identities=35% Similarity=0.533 Sum_probs=28.4
Q ss_pred CCcEEEEecC---CChHhHHHHHHHHHHhcCCce
Q 015421 42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 42 ~~~~I~VTGT---nGKTTt~~~l~~iL~~~g~~~ 72 (407)
..|+|+|||| .|||+++.+++.+|++.|+++
T Consensus 125 ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv 158 (449)
T COG2403 125 EKPVIAVTATRTGVGKSAVSRYVARLLRERGYRV 158 (449)
T ss_pred cCceEEEEEeccccchhHHHHHHHHHHHHcCCce
Confidence 4689999998 699999999999999999986
No 65
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=86.17 E-value=0.93 Score=44.95 Aligned_cols=32 Identities=31% Similarity=0.536 Sum_probs=28.8
Q ss_pred CCcEEEEe---cCCChHhHHHHHHHHHHhcCCcee
Q 015421 42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 42 ~~~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
+.++|+|+ |-.|||||+.-|++.|...|++|.
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVL 154 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVL 154 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceE
Confidence 45899999 889999999999999999999874
No 66
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=86.11 E-value=0.77 Score=40.94 Aligned_cols=30 Identities=37% Similarity=0.599 Sum_probs=27.0
Q ss_pred cEEEEe---cCCChHhHHHHHHHHHHhcCCcee
Q 015421 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 44 ~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
++|.|| |-.|||||++-|...|...|.++.
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~ 35 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVV 35 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEE
Confidence 578888 889999999999999999998873
No 67
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=86.09 E-value=0.91 Score=42.47 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=25.7
Q ss_pred cEEEEe--cCCChHhHHHHHHHHHHhcCCcee
Q 015421 44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 44 ~~I~VT--GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
++|+|. |=.|||||+.-|++.|.+.|+++.
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVL 33 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVL 33 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEE
Confidence 456666 678999999999999999999874
No 68
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=86.08 E-value=1.1 Score=40.63 Aligned_cols=33 Identities=21% Similarity=0.394 Sum_probs=28.5
Q ss_pred CcEEEEec--CCChHhHHHHHHHHHHhcCCceeec
Q 015421 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG 75 (407)
Q Consensus 43 ~~~I~VTG--TnGKTTt~~~l~~iL~~~g~~~~~~ 75 (407)
+++|+|+| -.||||++.-|...|+..|+++.+.
T Consensus 1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~vi 35 (229)
T PRK14494 1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRVATA 35 (229)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEE
Confidence 46899999 7899999999999999999888544
No 69
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=86.03 E-value=1.1 Score=42.98 Aligned_cols=32 Identities=25% Similarity=0.459 Sum_probs=29.2
Q ss_pred CCcEEEE----ecCCChHhHHHHHHHHHHhcCCcee
Q 015421 42 SIKILAV----TGTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 42 ~~~~I~V----TGTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
..|+|.| .|-.|||+++.+|...|++.|++++
T Consensus 48 ~~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ 83 (325)
T PRK00652 48 PVPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPG 83 (325)
T ss_pred CCCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEE
Confidence 5689998 7999999999999999999999874
No 70
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=85.75 E-value=1.2 Score=40.67 Aligned_cols=29 Identities=31% Similarity=0.497 Sum_probs=25.1
Q ss_pred cEEEEe---cCCChHhHHHHHHHHHHhcCCce
Q 015421 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 44 ~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~ 72 (407)
++|+|+ |-.||||++.-|+..|.+.|+++
T Consensus 2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~V 33 (246)
T TIGR03371 2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPV 33 (246)
T ss_pred cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcE
Confidence 567776 57899999999999999998776
No 71
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=85.73 E-value=1 Score=44.33 Aligned_cols=32 Identities=25% Similarity=0.238 Sum_probs=28.8
Q ss_pred CCcEEEEe---cCCChHhHHHHHHHHHHhcCCcee
Q 015421 42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 42 ~~~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
+.++|+|+ |-.|||||+.-|++.|...|++|.
T Consensus 105 ~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVL 139 (387)
T PHA02519 105 NPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVL 139 (387)
T ss_pred CceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEE
Confidence 36799999 889999999999999999999874
No 72
>PHA02518 ParA-like protein; Provisional
Probab=85.72 E-value=1.2 Score=39.52 Aligned_cols=29 Identities=38% Similarity=0.493 Sum_probs=24.3
Q ss_pred EEEEe---cCCChHhHHHHHHHHHHhcCCcee
Q 015421 45 ILAVT---GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 45 ~I~VT---GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
+|+|+ |-.||||++..|+..|...|+++.
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vl 33 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVL 33 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 45555 778899999999999999998773
No 73
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=85.26 E-value=1.1 Score=44.21 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=28.9
Q ss_pred CCcEEEEe---cCCChHhHHHHHHHHHHhcCCcee
Q 015421 42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 42 ~~~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
+.++|+|+ |-.|||||+.-|++.|...|++|.
T Consensus 105 ~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVL 139 (388)
T PRK13705 105 FPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVL 139 (388)
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeE
Confidence 45799999 999999999999999999998874
No 74
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=85.07 E-value=1.1 Score=41.64 Aligned_cols=30 Identities=33% Similarity=0.433 Sum_probs=25.4
Q ss_pred cEEEEe--cCCChHhHHHHHHHHHHhcCCcee
Q 015421 44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 44 ~~I~VT--GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
++|+|+ |-.|||||+.-|++.|...|+++.
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVL 34 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVL 34 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 455665 788999999999999999998874
No 75
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=84.63 E-value=1.2 Score=41.38 Aligned_cols=28 Identities=36% Similarity=0.387 Sum_probs=24.1
Q ss_pred EEEe--cCCChHhHHHHHHHHHHhcCCcee
Q 015421 46 LAVT--GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 46 I~VT--GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
|+|+ |-.||||++.-|++.|...|+++.
T Consensus 3 i~v~gKGGvGKTT~a~nLA~~la~~G~rvl 32 (267)
T cd02032 3 LAVYGKGGIGKSTTSSNLSVALAKRGKKVL 32 (267)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 4555 778999999999999999999874
No 76
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=84.62 E-value=1.4 Score=41.60 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=23.7
Q ss_pred CCCcEEEEecCC--ChHhHHHHHHHHHHhc
Q 015421 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (407)
Q Consensus 41 ~~~~~I~VTGTn--GKTTt~~~l~~iL~~~ 68 (407)
+...+|||+|.+ ||||++.+|..+|+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~ 89 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRW 89 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 345699999986 7999999999999853
No 77
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=84.14 E-value=1.5 Score=43.25 Aligned_cols=32 Identities=31% Similarity=0.541 Sum_probs=27.9
Q ss_pred CCcEEEEe---cCCChHhHHHHHHHHHHhcCCcee
Q 015421 42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 42 ~~~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
+.++|+|+ |-.|||||+.-|+..|...|+++.
T Consensus 103 ~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVL 137 (387)
T TIGR03453 103 HLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVL 137 (387)
T ss_pred CceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEE
Confidence 45789888 788999999999999999998873
No 78
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=83.62 E-value=1.4 Score=40.85 Aligned_cols=26 Identities=35% Similarity=0.593 Sum_probs=22.2
Q ss_pred EEEEecCC--ChHhHHHHHHHHHHhcCC
Q 015421 45 ILAVTGTN--GKSTVVTFVGQMLNHLGI 70 (407)
Q Consensus 45 ~I~VTGTn--GKTTt~~~l~~iL~~~g~ 70 (407)
+|+|||+. ||||++.-+.++|+..|.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~ 28 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGI 28 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 58999974 799999999999987663
No 79
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=83.53 E-value=1.4 Score=41.71 Aligned_cols=29 Identities=31% Similarity=0.534 Sum_probs=24.6
Q ss_pred EEEEe--cCCChHhHHHHHHHHHHhcCCcee
Q 015421 45 ILAVT--GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 45 ~I~VT--GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
+|+|. |-.|||||+..|++.|.+.|+++.
T Consensus 2 vIav~gKGGvGKTT~a~nLA~~La~~g~rVL 32 (296)
T TIGR02016 2 IIAIYGKGGSGKSFTTTNLSHMMAEMGKRVL 32 (296)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 44444 788999999999999999999874
No 80
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=83.12 E-value=1.8 Score=40.49 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=27.7
Q ss_pred CcEEEEec--CCChHhHHHHHHHHHHhcCCceeec
Q 015421 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG 75 (407)
Q Consensus 43 ~~~I~VTG--TnGKTTt~~~l~~iL~~~g~~~~~~ 75 (407)
+++|+|+| ..||||.+.-|...|++.| ++.+.
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~I 34 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTV 34 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEE
Confidence 46899999 8899999999999999999 66543
No 81
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=82.97 E-value=1.6 Score=41.20 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=27.5
Q ss_pred CCcEEEEe--cCCChHhHHHHHHHHHHhcCCceee
Q 015421 42 SIKILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (407)
Q Consensus 42 ~~~~I~VT--GTnGKTTt~~~l~~iL~~~g~~~~~ 74 (407)
++++|+|. |-.|||||+.-|+..|.+.|+++..
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLl 37 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILI 37 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEE
Confidence 45677776 6778999999999999999999843
No 82
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=82.48 E-value=1.9 Score=38.29 Aligned_cols=31 Identities=19% Similarity=0.174 Sum_probs=26.6
Q ss_pred CCcEEEEe---cCCChHhHHHHHHHHHHh-cCCce
Q 015421 42 SIKILAVT---GTNGKSTVVTFVGQMLNH-LGIEA 72 (407)
Q Consensus 42 ~~~~I~VT---GTnGKTTt~~~l~~iL~~-~g~~~ 72 (407)
..++|+|+ |-.||||++..|++.|.. .|.++
T Consensus 34 ~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~V 68 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTV 68 (207)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeE
Confidence 57899999 678999999999999986 58766
No 83
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=82.28 E-value=2.3 Score=36.21 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=27.5
Q ss_pred CcEEEEec--CCChHhHHHHHHHHHHhcCCceee
Q 015421 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV 74 (407)
Q Consensus 43 ~~~I~VTG--TnGKTTt~~~l~~iL~~~g~~~~~ 74 (407)
+++|+|+| -.||||.+..|...|...|+++++
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~ 34 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPALSARGLRVAV 34 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 46899998 679999999999999999988744
No 84
>COG4240 Predicted kinase [General function prediction only]
Probab=82.23 E-value=2.6 Score=37.95 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=35.4
Q ss_pred HHhcCCceeeHHHHHHhhCCCCCcEEEEecC--CChHhHHHHHHHHHHhcC-Cce
Q 015421 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGT--NGKSTVVTFVGQMLNHLG-IEA 72 (407)
Q Consensus 21 a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGT--nGKTTt~~~l~~iL~~~g-~~~ 72 (407)
+.+.-+|.+.+.+-.++.. .+.-+++|.|. .||||++..|..+|...| .++
T Consensus 29 ~~dl~Lpll~Kiap~~qe~-grPli~gisGpQGSGKStls~~i~~~L~~kg~ert 82 (300)
T COG4240 29 AQDLHLPLLAKIAPWAQER-GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERT 82 (300)
T ss_pred HHHHHHHHHHhhhhhhhhc-CCceEEEeecCCCCchhhHHHHHHHHHHHhcccce
Confidence 3444445554444444333 34569999997 579999999999999998 354
No 85
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=81.98 E-value=1.9 Score=39.49 Aligned_cols=29 Identities=31% Similarity=0.583 Sum_probs=24.9
Q ss_pred cEEEEe---cCCChHhHHHHHHHHHHhcCCce
Q 015421 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 44 ~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~ 72 (407)
++|+|+ |-.||||++..|+..|...|+++
T Consensus 2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~v 33 (261)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKV 33 (261)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHHcCCeE
Confidence 467776 57899999999999999998876
No 86
>PRK11670 antiporter inner membrane protein; Provisional
Probab=81.72 E-value=2.1 Score=41.91 Aligned_cols=32 Identities=28% Similarity=0.289 Sum_probs=28.4
Q ss_pred CCcEEEEe---cCCChHhHHHHHHHHHHhcCCcee
Q 015421 42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 42 ~~~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
-.++|+|+ |-.|||||+.-|+..|.+.|+++.
T Consensus 106 ~~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVl 140 (369)
T PRK11670 106 VKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVG 140 (369)
T ss_pred CCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 35799998 778999999999999999999884
No 87
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=81.58 E-value=1 Score=41.75 Aligned_cols=29 Identities=28% Similarity=0.311 Sum_probs=24.1
Q ss_pred cEEEEe--cCCChHhHHHHHHHHHHhcCCcee
Q 015421 44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 44 ~~I~VT--GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
++|+|. |-.|||||+.-|++.|.+.| ++.
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La~~G-rVL 33 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSNDH-RVL 33 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCCC-EEE
Confidence 455555 78899999999999999999 773
No 88
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=81.48 E-value=0.6 Score=47.22 Aligned_cols=123 Identities=22% Similarity=0.201 Sum_probs=72.2
Q ss_pred CcCcHHHHHHHhcCCc-eeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCce-eecccCCcc-chhhhhh
Q 015421 12 QLKATGLACLLQSGKR-VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA-FVGGNLGNP-LSEAAFH 88 (407)
Q Consensus 12 ~~~~p~l~~a~~~~~~-~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~-~~~g~~g~~-~~~~~~~ 88 (407)
-..+.....|.+.|.- ++...+. .......++|.|+||+||+++..+....+...+.++ ...|+-|.. .+.....
T Consensus 34 ~~g~~~~~~a~~~Gavav~~~~~~--~~~~~~~~vi~V~~~~~~~~~~a~~~y~~ps~~l~vigvTGTNgKTt~t~~~~~ 111 (475)
T COG0769 34 VDGHDFIAGAIAPGAVAVVVEKDI--KLAEAGVPVIVVTGTNGKLTTLALAFYGLPSGKLKVIGVTGTNGKTTTTSLLAQ 111 (475)
T ss_pred cccccchHhHhhCCCEEEEecccc--cccccCCCEEEEcCcHHHHHHHHHHhccCcccCceEEEEcCCCcHHHHHHHHHH
Confidence 3445555667777744 4444444 222234569999999999999999999998854554 323443332 2211111
Q ss_pred cccCCCCCCCCcEEEEEecc---cccccCCccccceEEEEecCChhhhccCCCH
Q 015421 89 CIALPSSKPKFQVAVVEVSS---YQMEIPNKYFCPTVSVVLNLTPDHLERHKTM 139 (407)
Q Consensus 89 ~~~~~~~~~~~~~~V~E~g~---~~l~~~~~~~~p~i~viTni~~dHl~~~~t~ 139 (407)
... .....+.++..|..+ +..+ ......|+...++|+..|+++...+.
T Consensus 112 ~~~--~~g~~~~~~gT~g~~~~~~~~~-~~~~tTP~~~~l~~~~~~~~d~~~e~ 162 (475)
T COG0769 112 ILK--KLGKKTALIGTEGDELSPGILE-PTGLTTPEALDLQNLLRDLLDRGAEI 162 (475)
T ss_pred HHH--hcCCceEEEEEEeeeccCCccc-ccCCCCccHHHHHHHHHHHHHcCCcE
Confidence 111 112334555665542 2222 22246799999999999999887643
No 89
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=81.11 E-value=1.4 Score=36.85 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=20.3
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL~ 66 (407)
..|-|.|||| .||||+++.|+..+.
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~~ 32 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKTG 32 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHhC
Confidence 3577999999 579999999996553
No 90
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=81.03 E-value=2.1 Score=39.86 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=24.7
Q ss_pred EEEEe--cCCChHhHHHHHHHHHHhcCCcee
Q 015421 45 ILAVT--GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 45 ~I~VT--GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
.|+|. |=.||||++.-|+..|.+.|+++.
T Consensus 2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~Vl 32 (275)
T TIGR01287 2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVM 32 (275)
T ss_pred eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEE
Confidence 45565 678999999999999999998874
No 91
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=80.96 E-value=1.6 Score=39.92 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=23.7
Q ss_pred EEEEecCCChHhHHHHHHHHHHhcCCce
Q 015421 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 45 ~I~VTGTnGKTTt~~~l~~iL~~~g~~~ 72 (407)
++++.|-.||||++.-|+..|...|.+|
T Consensus 6 i~s~kGGvG~TTltAnLA~aL~~~G~~V 33 (243)
T PF06564_consen 6 IVSPKGGVGKTTLTANLAWALARLGESV 33 (243)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHCCCcE
Confidence 4455677899999999999999999766
No 92
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=80.75 E-value=2.3 Score=42.19 Aligned_cols=34 Identities=15% Similarity=0.271 Sum_probs=29.8
Q ss_pred CcEEEEec--CCChHhHHHHHHHHHHhcCCceeecc
Q 015421 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (407)
Q Consensus 43 ~~~I~VTG--TnGKTTt~~~l~~iL~~~g~~~~~~g 76 (407)
+++|+|+| -.||||.+.-|-..|+..|+++.+.-
T Consensus 1 MkVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIK 36 (452)
T PRK14495 1 MRVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVK 36 (452)
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 47899999 78999999999999999999986643
No 93
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=80.74 E-value=2.6 Score=35.02 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=23.9
Q ss_pred cEEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 44 ~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
|+|+|.|- .||||.++.|-..|...|+++.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~ 32 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVA 32 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceE
Confidence 57888885 5999999999999999999875
No 94
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=80.62 E-value=2.6 Score=40.14 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=27.9
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHHhcCCcee
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~~ 73 (407)
++.+|.+.|.| |||||..=|++.|.+.|+++.
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~Vl 171 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVL 171 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEE
Confidence 46688888887 599999999999999998874
No 95
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=80.22 E-value=2.5 Score=39.82 Aligned_cols=61 Identities=20% Similarity=0.202 Sum_probs=42.4
Q ss_pred cCcHHH-HHHHhcCCce--eeHHHHHHhh-----C-CCCCcEEEEecC---CChHhHHHHHHHHHHhcCCcee
Q 015421 13 LKATGL-ACLLQSGKRV--MSELDFAAQV-----I-PRSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 13 ~~~p~l-~~a~~~~~~~--l~~~~~~~~~-----~-~~~~~~I~VTGT---nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
+++|++ ..|.+.|.++ .+++..-... . ..+.++|.|.|| .||=||+..|...+++.|+++.
T Consensus 109 s~dp~~~k~A~~~G~rl~dvR~p~~~l~~~~tG~~~k~~a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~ 181 (339)
T COG3367 109 SDDPEFVKLAERTGVRLDDVRKPPLDLEYLCTGMARKVDAKVVLVVGTDCAVGKRTTALELREAAREEGIKAG 181 (339)
T ss_pred hcChHHHHHHHHcCCeeEeeccCccchhhhccCcccccCCcEEEEeccccccchhHHHHHHHHHHHHhCCccc
Confidence 566766 4556666654 2333322211 1 125679999999 5999999999999999999874
No 96
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=80.22 E-value=2.2 Score=39.80 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=25.4
Q ss_pred cEEEEe--cCCChHhHHHHHHHHHHh-cCCceee
Q 015421 44 KILAVT--GTNGKSTVVTFVGQMLNH-LGIEAFV 74 (407)
Q Consensus 44 ~~I~VT--GTnGKTTt~~~l~~iL~~-~g~~~~~ 74 (407)
++|+|+ |-.|||||+.-|+..|.+ .|+++..
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLl 36 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFI 36 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEE
Confidence 466666 677899999999999997 5988743
No 97
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=80.02 E-value=4.2 Score=37.63 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=26.7
Q ss_pred CCCcEEEEecC--CChHhHHHHHHHHHHhcCCc
Q 015421 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIE 71 (407)
Q Consensus 41 ~~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~ 71 (407)
+..-+|||+|| .||+||++.+..+|+..+-.
T Consensus 80 ~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~ 112 (283)
T COG1072 80 QRPFIIGIAGSVAVGKSTTARILQALLSRWPES 112 (283)
T ss_pred CCCEEEEeccCccccHHHHHHHHHHHHhhCCCC
Confidence 34569999999 48999999999999998754
No 98
>CHL00175 minD septum-site determining protein; Validated
Probab=79.75 E-value=2.9 Score=39.02 Aligned_cols=32 Identities=28% Similarity=0.457 Sum_probs=27.3
Q ss_pred CCcEEEEe---cCCChHhHHHHHHHHHHhcCCcee
Q 015421 42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 42 ~~~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
..++|+|+ |-.||||++.-|+..|.+.|+++.
T Consensus 14 ~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vl 48 (281)
T CHL00175 14 MSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVA 48 (281)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEE
Confidence 45788888 567999999999999999998774
No 99
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=79.75 E-value=2.9 Score=37.77 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=24.9
Q ss_pred cEEEEe---cCCChHhHHHHHHHHHHhcCCcee
Q 015421 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 44 ~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
|+|.+. |-.||||++.+|++.|.+.|.++.
T Consensus 2 ~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~ 34 (231)
T PF07015_consen 2 PVITFASSKGGAGKTTAAMALASELAARGARVA 34 (231)
T ss_pred CeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEE
Confidence 455555 778999999999999999997773
No 100
>PRK00784 cobyric acid synthase; Provisional
Probab=79.73 E-value=2.1 Score=43.63 Aligned_cols=30 Identities=40% Similarity=0.495 Sum_probs=26.3
Q ss_pred CcEEEEecC---CChHhHHHHHHHHHHhcCCce
Q 015421 43 IKILAVTGT---NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 43 ~~~I~VTGT---nGKTTt~~~l~~iL~~~g~~~ 72 (407)
++.|.|||| .|||+++..|...|++.|+++
T Consensus 2 ~~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v 34 (488)
T PRK00784 2 AKALMVQGTASDAGKSTLVAGLCRILARRGYRV 34 (488)
T ss_pred CceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeE
Confidence 356888888 899999999999999999875
No 101
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=79.64 E-value=2.1 Score=40.32 Aligned_cols=28 Identities=36% Similarity=0.374 Sum_probs=24.1
Q ss_pred EEEe--cCCChHhHHHHHHHHHHhcCCcee
Q 015421 46 LAVT--GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 46 I~VT--GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
|+|+ |-.|||||+.-|++.|.+.|+++.
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~~G~rVL 32 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALARRGKKVL 32 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEE
Confidence 4554 778999999999999999999874
No 102
>PRK14974 cell division protein FtsY; Provisional
Probab=79.29 E-value=3.2 Score=40.01 Aligned_cols=32 Identities=22% Similarity=0.390 Sum_probs=27.1
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHHhcCCcee
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~~ 73 (407)
+..+|.++|.+ |||||+..+++.|...|.++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~ 172 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVV 172 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 35689999876 699999999999999887764
No 103
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=79.28 E-value=2.2 Score=36.52 Aligned_cols=24 Identities=38% Similarity=0.397 Sum_probs=22.0
Q ss_pred cCCChHhHHHHHHHHHHhcCCcee
Q 015421 50 GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 50 GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
|-.||||++.-|+..|.+.|+++.
T Consensus 9 gG~GKTt~a~~LA~~la~~g~~vl 32 (169)
T cd02037 9 GGVGKSTVAVNLALALAKLGYKVG 32 (169)
T ss_pred CcCChhHHHHHHHHHHHHcCCcEE
Confidence 778999999999999999998874
No 104
>PRK05439 pantothenate kinase; Provisional
Probab=79.27 E-value=3.7 Score=39.10 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=23.4
Q ss_pred CCCcEEEEecCC--ChHhHHHHHHHHHHhc
Q 015421 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (407)
Q Consensus 41 ~~~~~I~VTGTn--GKTTt~~~l~~iL~~~ 68 (407)
+...+|+|||+. ||||++..|...|...
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~ 113 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRW 113 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 345699999985 6999999999999764
No 105
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=79.14 E-value=3.2 Score=39.87 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=28.9
Q ss_pred CCCcEEEEe--cCCChHhHHHHHHHHHHhcCCceee
Q 015421 41 RSIKILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (407)
Q Consensus 41 ~~~~~I~VT--GTnGKTTt~~~l~~iL~~~g~~~~~ 74 (407)
++.++|.|+ |..||||++.-|+..|.+.|+++..
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVll 64 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLL 64 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 456788888 5789999999999999999988743
No 106
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=79.10 E-value=2.6 Score=38.80 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=22.5
Q ss_pred EEEecCCChHhHHHHHHHHHH-hcCCcee
Q 015421 46 LAVTGTNGKSTVVTFVGQMLN-HLGIEAF 73 (407)
Q Consensus 46 I~VTGTnGKTTt~~~l~~iL~-~~g~~~~ 73 (407)
...-|-.|||||+--|+..|. ..|+++.
T Consensus 8 ~n~KGGvGKTT~a~nLa~~La~~~~~kVL 36 (259)
T COG1192 8 ANQKGGVGKTTTAVNLAAALAKRGGKKVL 36 (259)
T ss_pred EecCCCccHHHHHHHHHHHHHHhcCCcEE
Confidence 334488999999999999999 5557774
No 107
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=79.01 E-value=2.9 Score=38.11 Aligned_cols=29 Identities=31% Similarity=0.619 Sum_probs=24.3
Q ss_pred EEEEe---cCCChHhHHHHHHHHHHhcCCcee
Q 015421 45 ILAVT---GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 45 ~I~VT---GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
+|+|+ |-.||||++.-|+..|.+.|+++.
T Consensus 2 ii~v~~~KGGvGKTt~a~~LA~~la~~g~~Vl 33 (251)
T TIGR01969 2 IITIASGKGGTGKTTITANLGVALAKLGKKVL 33 (251)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEE
Confidence 45555 778999999999999999998773
No 108
>PRK06696 uridine kinase; Validated
Probab=78.52 E-value=3.7 Score=37.01 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=27.4
Q ss_pred CCCcEEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 41 ~~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
....+|+|+|- .||||.+..|+..|...|..+.
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~ 54 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVI 54 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 35679999974 6899999999999998876553
No 109
>PRK13236 nitrogenase reductase; Reviewed
Probab=77.97 E-value=3.5 Score=39.02 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=27.7
Q ss_pred CCCcEEEEe--cCCChHhHHHHHHHHHHhcCCcee
Q 015421 41 RSIKILAVT--GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 41 ~~~~~I~VT--GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
.++++|.|. |-.|||||+.-|++.|.+.|+++.
T Consensus 4 ~~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVL 38 (296)
T PRK13236 4 ENIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRIL 38 (296)
T ss_pred cCceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEE
Confidence 355667776 678999999999999999999984
No 110
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=77.75 E-value=3.2 Score=36.07 Aligned_cols=28 Identities=25% Similarity=0.463 Sum_probs=23.0
Q ss_pred EEEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 45 ~I~VTGT--nGKTTt~~~l~~iL~~~g~~~ 72 (407)
+|+|+|. .||||.+..|...|...|.++
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~ 30 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGP 30 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 4788875 589999999999999776554
No 111
>PRK10818 cell division inhibitor MinD; Provisional
Probab=77.70 E-value=3.3 Score=38.35 Aligned_cols=29 Identities=31% Similarity=0.439 Sum_probs=24.8
Q ss_pred cEEEEe---cCCChHhHHHHHHHHHHhcCCce
Q 015421 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 44 ~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~ 72 (407)
++|+|+ |=.||||++.-|+..|.+.|+++
T Consensus 3 kviav~s~KGGvGKTt~a~nlA~~la~~g~~v 34 (270)
T PRK10818 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKT 34 (270)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeE
Confidence 566776 67799999999999999998776
No 112
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=77.65 E-value=4.9 Score=33.00 Aligned_cols=45 Identities=22% Similarity=0.281 Sum_probs=31.7
Q ss_pred EEecC-CChHhHHHHHHHHHHhcCCceeecccCCccchhhhhhcccCCCCCCCCcEEEEEeccc
Q 015421 47 AVTGT-NGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY 109 (407)
Q Consensus 47 ~VTGT-nGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~g~~ 109 (407)
.|||+ .|||+++.-+...|++.|.++...- |. ..+|+.++|-.++
T Consensus 4 ~~~~~~~Gkt~~~~~l~~~l~~~~~~v~~~k----p~--------------~~~d~vliEGaGg 49 (134)
T cd03109 4 FGTGTDIGKTVATAILARALKEKGYRVAPLK----PV--------------QTYDFVLVEGAGG 49 (134)
T ss_pred EeCCCCcCHHHHHHHHHHHHHHCCCeEEEEe----cC--------------CCCCEEEEECCCc
Confidence 34443 7999999999999999998873211 11 1268899997643
No 113
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=77.30 E-value=4 Score=39.06 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=25.7
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHHhcCCcee
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~~ 73 (407)
+..+|++.|.| |||||+..|+..+...|.++.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~ 146 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVL 146 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEE
Confidence 35677777765 799999999999998876663
No 114
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=77.01 E-value=3.3 Score=35.06 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=25.0
Q ss_pred EEEEecC--CChHhHHHHHHHHHHhcCCceeec
Q 015421 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVG 75 (407)
Q Consensus 45 ~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~~~ 75 (407)
+|+|+|. .||||++..|...|+..|+++.+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 3667774 589999999999999999888543
No 115
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=77.00 E-value=4.3 Score=35.09 Aligned_cols=35 Identities=26% Similarity=0.258 Sum_probs=28.8
Q ss_pred CCcEEEEec--CCChHhHHHHHHHHHHhcCCceeecc
Q 015421 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (407)
Q Consensus 42 ~~~~I~VTG--TnGKTTt~~~l~~iL~~~g~~~~~~g 76 (407)
..++++|+| -.||||...-|...|...|+++++.-
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik 41 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIK 41 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEE
Confidence 567999999 46899999999999999898875433
No 116
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=76.70 E-value=2.5 Score=36.67 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=23.1
Q ss_pred EEEecCCChHhHHHHHHHHHHhcCCcee
Q 015421 46 LAVTGTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 46 I~VTGTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
.+.-|=.||||++..|+..|...|+++.
T Consensus 4 ~~~kGG~GKTt~a~~la~~la~~g~~Vl 31 (195)
T PF01656_consen 4 TSGKGGVGKTTIAANLAQALARKGKKVL 31 (195)
T ss_dssp EESSTTSSHHHHHHHHHHHHHHTTS-EE
T ss_pred EcCCCCccHHHHHHHHHhcccccccccc
Confidence 3445778999999999999999999874
No 117
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=76.66 E-value=3.3 Score=37.48 Aligned_cols=42 Identities=24% Similarity=0.393 Sum_probs=30.7
Q ss_pred ceeeHHHHHHhhCCCCCcEEEEecCC--ChHhHHHHHHHHHHhcC
Q 015421 27 RVMSELDFAAQVIPRSIKILAVTGTN--GKSTVVTFVGQMLNHLG 69 (407)
Q Consensus 27 ~~l~~~~~~~~~~~~~~~~I~VTGTn--GKTTt~~~l~~iL~~~g 69 (407)
+++.+++...+.. .+..+|+|+|-+ ||||.+..|...|...+
T Consensus 18 ~l~~~~~~~~~~~-~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 18 PLLRRLAALQAEP-QRRTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred HHHHHHHHHHhcC-CCCEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 4444555444433 456799999986 59999999999999765
No 118
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=76.57 E-value=7.7 Score=37.06 Aligned_cols=61 Identities=18% Similarity=0.183 Sum_probs=40.7
Q ss_pred CcCcHHHHHHHhcCCc-eeeHH-------HHHHhhC---CCCCcEEEEec---CCChHhHHHHHHHHHHhcCCce
Q 015421 12 QLKATGLACLLQSGKR-VMSEL-------DFAAQVI---PRSIKILAVTG---TNGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 12 ~~~~p~l~~a~~~~~~-~l~~~-------~~~~~~~---~~~~~~I~VTG---TnGKTTt~~~l~~iL~~~g~~~ 72 (407)
.++...+..|...|.. ++..+ +.+.+.. .+..++|+|+| -.||||++.-|+..|...|.++
T Consensus 51 ~~~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~l~~~~~~~~~~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~V 125 (322)
T TIGR03815 51 EPGGALWRAAAAVGAEHVAVLPEAEGWLVELLADLDQSPPARGVVVAVIGGRGGAGASTLAAALALAAARHGLRT 125 (322)
T ss_pred CCCHHHHHHHHHhChhheeeCCCCHHHHHHHHHhhccCCCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCE
Confidence 3455566777777766 44322 1222221 23567888885 5689999999999999888765
No 119
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=76.39 E-value=6 Score=36.42 Aligned_cols=113 Identities=20% Similarity=0.289 Sum_probs=60.5
Q ss_pred CCCcEEEEecC--CChHhHHHHHHHHHHhcCCceee----------ccc-CCccchhhhhh---ccc-----CC------
Q 015421 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV----------GGN-LGNPLSEAAFH---CIA-----LP------ 93 (407)
Q Consensus 41 ~~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~~----------~g~-~g~~~~~~~~~---~~~-----~~------ 93 (407)
.+..+|||||+ .||||...-|...|++.|.+++. +|. +|.-+-...+. ..+ +.
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 35679999998 57999999999999999988742 221 22211111110 000 00
Q ss_pred ----------CCCCCCcEEEEEecc-cccc--cCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEE
Q 015421 94 ----------SSKPKFQVAVVEVSS-YQME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL 160 (407)
Q Consensus 94 ----------~~~~~~~~~V~E~g~-~~l~--~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v 160 (407)
....++|+.++|+=+ |+-+ ... ....-+.|++.-.-|-+.. .|+++++- ...+|
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~-~aD~~v~v~~Pg~GD~iQ~---------~KaGimEi---aDi~v 173 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIAD-MADTVVLVLVPGLGDEIQA---------IKAGIMEI---ADIFV 173 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHT-TSSEEEEEEESSTCCCCCT---------B-TTHHHH----SEEE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHH-hcCeEEEEecCCCccHHHH---------Hhhhhhhh---ccEEE
Confidence 013468999999863 6543 222 2455666777766665544 45556553 45889
Q ss_pred EeCCCh
Q 015421 161 LPFGNQ 166 (407)
Q Consensus 161 ~n~dd~ 166 (407)
+|..|.
T Consensus 174 VNKaD~ 179 (266)
T PF03308_consen 174 VNKADR 179 (266)
T ss_dssp EE--SH
T ss_pred EeCCCh
Confidence 998774
No 120
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=76.37 E-value=4.3 Score=37.87 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=25.5
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~ 72 (407)
+.++|.++|. .|||||+.-|+..|...|.++
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V 103 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSV 103 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEE
Confidence 4568888875 479999999999998888766
No 121
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=76.29 E-value=3.3 Score=37.43 Aligned_cols=28 Identities=29% Similarity=0.532 Sum_probs=20.8
Q ss_pred EEEEe--cCCChHhHHHH-HHHHHHhcCCce
Q 015421 45 ILAVT--GTNGKSTVVTF-VGQMLNHLGIEA 72 (407)
Q Consensus 45 ~I~VT--GTnGKTTt~~~-l~~iL~~~g~~~ 72 (407)
.|+|| |-.||||.+.+ +..++++.|+.+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~V 32 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNV 32 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceE
Confidence 58888 67899999999 666666555544
No 122
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=76.25 E-value=2.3 Score=39.42 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.4
Q ss_pred ecCCChHhHHHHHHHHHHhcCCcee
Q 015421 49 TGTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 49 TGTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
-|-.|||||+.-|+..|.+.|+++.
T Consensus 8 KGGVGKTT~~~nLA~~La~~g~rVL 32 (268)
T TIGR01281 8 KGGIGKSTTSSNLSVAFAKLGKRVL 32 (268)
T ss_pred CCcCcHHHHHHHHHHHHHhCCCeEE
Confidence 3788999999999999999998874
No 123
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=76.22 E-value=6.3 Score=34.14 Aligned_cols=42 Identities=21% Similarity=0.222 Sum_probs=32.0
Q ss_pred eeHHHHHHhhCCCCCcEEEEec--CCChHhHHHHHHHHHHhcCCc
Q 015421 29 MSELDFAAQVIPRSIKILAVTG--TNGKSTVVTFVGQMLNHLGIE 71 (407)
Q Consensus 29 l~~~~~~~~~~~~~~~~I~VTG--TnGKTTt~~~l~~iL~~~g~~ 71 (407)
.+..+...+.. ....+|.++| ..||||.+..|...|...|..
T Consensus 5 ~~~~~~~~~~~-~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~ 48 (184)
T TIGR00455 5 ITKDERQALNG-HRGVVIWLTGLSGSGKSTIANALEKKLESKGYR 48 (184)
T ss_pred CCHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCc
Confidence 34445455554 4668999999 889999999999999877654
No 124
>PRK07667 uridine kinase; Provisional
Probab=76.20 E-value=3.7 Score=36.09 Aligned_cols=31 Identities=29% Similarity=0.408 Sum_probs=26.0
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~ 72 (407)
...+|+|+|- .||||++..|...|...|.++
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~ 48 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPF 48 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcE
Confidence 3479999985 689999999999999877654
No 125
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=76.11 E-value=3.9 Score=37.82 Aligned_cols=31 Identities=32% Similarity=0.277 Sum_probs=27.5
Q ss_pred CcEEEEe---cCCChHhHHHHHHHHHHhcCCcee
Q 015421 43 IKILAVT---GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 43 ~~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
..+|+|+ |-.|||||+..|+..|...|.+++
T Consensus 47 k~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vg 80 (300)
T KOG3022|consen 47 KHIILVLSGKGGVGKSTVTVNLALALASEGKKVG 80 (300)
T ss_pred ceEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEE
Confidence 4578887 899999999999999999998874
No 126
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=75.37 E-value=4.2 Score=35.79 Aligned_cols=30 Identities=30% Similarity=0.388 Sum_probs=25.7
Q ss_pred cEEEEecC---CChHhHHHHHHHHHHhcCCcee
Q 015421 44 KILAVTGT---NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 44 ~~I~VTGT---nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
+.|-|||| .|||+++..|.+.|++.|.+++
T Consensus 1 r~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~ 33 (199)
T PF13500_consen 1 RTIFITGTDTGVGKTVVSLGLARALRRRGIKVG 33 (199)
T ss_dssp -EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEE
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHhCCCceE
Confidence 35778888 6999999999999999998873
No 127
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=75.00 E-value=3.7 Score=37.01 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=19.8
Q ss_pred EEEEecCC--ChHhHHHHHHHHHHh
Q 015421 45 ILAVTGTN--GKSTVVTFVGQMLNH 67 (407)
Q Consensus 45 ~I~VTGTn--GKTTt~~~l~~iL~~ 67 (407)
+|||+|.+ ||||++..|...|..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 47888875 799999999999985
No 128
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=74.94 E-value=4.4 Score=36.73 Aligned_cols=29 Identities=31% Similarity=0.283 Sum_probs=25.2
Q ss_pred EEEEecC---CChHhHHHHHHHHHHhcCCcee
Q 015421 45 ILAVTGT---NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 45 ~I~VTGT---nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
.|-|||| .|||+++..|.+.|++.|.+++
T Consensus 4 ~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~ 35 (231)
T PRK12374 4 RFFITGTDTSVGKTVVSRALLQALASQGKTVA 35 (231)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 4677766 7999999999999999998874
No 129
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=74.53 E-value=3 Score=37.32 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=22.1
Q ss_pred CcEEEEec--CCChHhHHHHHHHHHHhc
Q 015421 43 IKILAVTG--TNGKSTVVTFVGQMLNHL 68 (407)
Q Consensus 43 ~~~I~VTG--TnGKTTt~~~l~~iL~~~ 68 (407)
..+|||+| ..||||.+..|...|...
T Consensus 8 ~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 46999997 579999999999999754
No 130
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=73.18 E-value=3.9 Score=32.48 Aligned_cols=25 Identities=28% Similarity=0.579 Sum_probs=19.6
Q ss_pred EEEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 45 ~I~VTGT--nGKTTt~~~l~~iL~~~g~~~ 72 (407)
+|+|+|. .||||++..|+.-| |+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~---~~~~ 27 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL---GFPV 27 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---TCEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---CCeE
Confidence 5777776 58999999999877 5554
No 131
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=73.15 E-value=5.2 Score=36.63 Aligned_cols=30 Identities=33% Similarity=0.412 Sum_probs=23.9
Q ss_pred EEEEe---cCCChHhHHHHHHHHHHhcCCceee
Q 015421 45 ILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (407)
Q Consensus 45 ~I~VT---GTnGKTTt~~~l~~iL~~~g~~~~~ 74 (407)
+|.|. |-.|||||+.=|+-.|...|++|++
T Consensus 2 iIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~ 34 (261)
T PF09140_consen 2 IIVVGSGKGGVGKSTVAVNLAVALARMGKKVGL 34 (261)
T ss_dssp EEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEE
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 56665 7789999999999999999999853
No 132
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=73.03 E-value=4.3 Score=34.67 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=23.5
Q ss_pred EEecCCChHhHHHHHHHHHHhcCCcee
Q 015421 47 AVTGTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 47 ~VTGTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
.-.|-.||||++..|+..|.+.|+++.
T Consensus 6 ~~kgG~GKtt~a~~la~~l~~~g~~vl 32 (179)
T cd02036 6 SGKGGVGKTTTTANLGTALAQLGYKVV 32 (179)
T ss_pred eCCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 345788999999999999999999874
No 133
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=72.87 E-value=6 Score=36.79 Aligned_cols=32 Identities=38% Similarity=0.495 Sum_probs=28.2
Q ss_pred CCcEEEEe---cCCChHhHHHHHHHHHHhcCCcee
Q 015421 42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 42 ~~~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
..++|+|| |--|||||+..|+..|.+.|+++.
T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVl 90 (265)
T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVL 90 (265)
T ss_pred cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEE
Confidence 46788888 667999999999999999999984
No 134
>PRK03846 adenylylsulfate kinase; Provisional
Probab=72.72 E-value=8.2 Score=33.96 Aligned_cols=43 Identities=26% Similarity=0.282 Sum_probs=32.0
Q ss_pred eeHHHHHHhhCCCCCcEEEEec--CCChHhHHHHHHHHHHhcCCce
Q 015421 29 MSELDFAAQVIPRSIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 29 l~~~~~~~~~~~~~~~~I~VTG--TnGKTTt~~~l~~iL~~~g~~~ 72 (407)
.+..+...+.- .+..+|+++| -.||||.+..|...|...|..+
T Consensus 11 v~~~~~~~~~~-~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~ 55 (198)
T PRK03846 11 VTKAQREQLHG-HKGVVLWFTGLSGSGKSTVAGALEEALHELGVST 55 (198)
T ss_pred CCHHHHHHhcC-CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCE
Confidence 34445555554 4667999999 7899999999999998776543
No 135
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=72.65 E-value=4.6 Score=31.19 Aligned_cols=46 Identities=15% Similarity=0.310 Sum_probs=33.2
Q ss_pred EEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccchhhhhhcccCCCCCCCCcEEEEEecc
Q 015421 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSS 108 (407)
Q Consensus 45 ~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~g~ 108 (407)
+++--|..||||++.-++..|.+.|.++...-. +..+++.|+.++.
T Consensus 4 ~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~------------------d~~~d~viiD~p~ 49 (104)
T cd02042 4 VANQKGGVGKTTTAVNLAAALARRGKRVLLIDL------------------DPQYDYIIIDTPP 49 (104)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeC------------------CCCCCEEEEeCcC
Confidence 344557899999999999999998877632211 2226788999884
No 136
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=72.49 E-value=7.1 Score=33.10 Aligned_cols=30 Identities=27% Similarity=0.321 Sum_probs=25.1
Q ss_pred CcEEEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~ 72 (407)
..+|-+||. .||||.+..|..-|.+.|..+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~ 33 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKV 33 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-E
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 358899986 479999999999999999876
No 137
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=72.03 E-value=3.8 Score=36.33 Aligned_cols=28 Identities=36% Similarity=0.605 Sum_probs=21.4
Q ss_pred CcEEEEecC--CChHhHHHHHHHHHHhcCCceee
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~~ 74 (407)
+.+||+||. .||||++.+++. .|+.+..
T Consensus 2 ~~iIglTG~igsGKStva~~~~~----~G~~vid 31 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE----LGFPVID 31 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH----cCCeEEE
Confidence 468999996 789999887765 5666543
No 138
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=71.50 E-value=2.6 Score=36.70 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=21.9
Q ss_pred CCCcEEEEecCCChHh--HHHHHHHHHHhcCCc
Q 015421 41 RSIKILAVTGTNGKST--VVTFVGQMLNHLGIE 71 (407)
Q Consensus 41 ~~~~~I~VTGTnGKTT--t~~~l~~iL~~~g~~ 71 (407)
.+-|+|+||||.|-+| |+.....+++....+
T Consensus 3 aKhPiIavTGSSGAGTTTts~aFrKiF~~~~I~ 35 (289)
T COG3954 3 AKHPVIAVTGSSGAGTTTTSLAFRKIFAQLNIH 35 (289)
T ss_pred CCCceEEEecCCCCCcccHHHHHHHHHHhcCcc
Confidence 3678999999997655 455556777766544
No 139
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=70.96 E-value=5 Score=40.45 Aligned_cols=30 Identities=23% Similarity=0.352 Sum_probs=26.0
Q ss_pred CcEEEEecCC---ChHhHHHHHHHHHHhcCCce
Q 015421 43 IKILAVTGTN---GKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 43 ~~~I~VTGTn---GKTTt~~~l~~iL~~~g~~~ 72 (407)
++.|.||||. |||+++..|...|++.|+++
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V 35 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRV 35 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCc
Confidence 5678888875 59999999999999999876
No 140
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=70.21 E-value=6.2 Score=33.62 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=26.7
Q ss_pred CcEEEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~ 72 (407)
.-.|+|||. .||||.+.-++..|+..|+++
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kv 36 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKV 36 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCcee
Confidence 457999997 579999999999999999887
No 141
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=70.08 E-value=7 Score=37.25 Aligned_cols=32 Identities=25% Similarity=0.538 Sum_probs=28.8
Q ss_pred CCcEEEEe----cCCChHhHHHHHHHHHHhcCCcee
Q 015421 42 SIKILAVT----GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 42 ~~~~I~VT----GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
..|+|.|- |-.|||.++.+|+..|++.|++++
T Consensus 27 ~vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~ 62 (311)
T TIGR00682 27 PVPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVG 62 (311)
T ss_pred CCCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEE
Confidence 57899884 999999999999999999999874
No 142
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=68.60 E-value=6.8 Score=35.07 Aligned_cols=28 Identities=39% Similarity=0.468 Sum_probs=23.3
Q ss_pred EEEecC---CChHhHHHHHHHHHHhcCCcee
Q 015421 46 LAVTGT---NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 46 I~VTGT---nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
|.|||| .|||+++..|.+.|++.|.++.
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~ 32 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVA 32 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceE
Confidence 345554 7999999999999999998873
No 143
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=68.13 E-value=8.5 Score=32.08 Aligned_cols=29 Identities=28% Similarity=0.337 Sum_probs=23.6
Q ss_pred cEEEEec---CCChHhHHHHHHHHHHhcCCce
Q 015421 44 KILAVTG---TNGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 44 ~~I~VTG---TnGKTTt~~~l~~iL~~~g~~~ 72 (407)
++|+|+| ..||||++..++..|.+.|.++
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~V 32 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKV 32 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-E
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCe
Confidence 4566665 6799999999999999998765
No 144
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=67.76 E-value=13 Score=36.73 Aligned_cols=44 Identities=16% Similarity=0.267 Sum_probs=30.7
Q ss_pred CcEEEEecC--CChHhHHHHHHHHHHhcCCceeec-ccCCccchhhh
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVG-GNLGNPLSEAA 86 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~~~-g~~g~~~~~~~ 86 (407)
..+|-..|= .|||||+.=|+..|+..|+++... ..+-.|-....
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQ 146 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQ 146 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHH
Confidence 445666653 599999999999999999998543 33444444333
No 145
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=67.75 E-value=7.9 Score=37.85 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=30.5
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHHHhcCCceeeccc
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGGN 77 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~~~g~ 77 (407)
+.++|+|+|. .||||...-|...|++.|+++++.-+
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh 241 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKH 241 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEE
Confidence 4689999994 69999999999999999998855444
No 146
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=66.18 E-value=5.9 Score=36.33 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=19.5
Q ss_pred cEEEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 44 ~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~ 72 (407)
.+|||||. .||||++.++..- .|.++
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~---~G~~v 29 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREE---HHIEV 29 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH---cCCeE
Confidence 58999996 7899998887653 25544
No 147
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=65.91 E-value=5.7 Score=34.57 Aligned_cols=25 Identities=40% Similarity=0.696 Sum_probs=18.9
Q ss_pred EEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 45 ~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
+|||||. .||||++.++.. .|+.+.
T Consensus 2 iIglTG~igsGKStv~~~l~~----~G~~vi 28 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAE----LGFPVI 28 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHH----TT-EEE
T ss_pred EEEEECCCcCCHHHHHHHHHH----CCCCEE
Confidence 6999996 689999988765 676653
No 148
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=65.72 E-value=9.9 Score=36.15 Aligned_cols=31 Identities=29% Similarity=0.406 Sum_probs=24.9
Q ss_pred cEEEEe--cCCChHhHHHHHHHHHHhcCCceee
Q 015421 44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (407)
Q Consensus 44 ~~I~VT--GTnGKTTt~~~l~~iL~~~g~~~~~ 74 (407)
++|-++ |-.||||++..++--+.+.|.++..
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLl 34 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLL 34 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEE
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeE
Confidence 345555 7899999999999999999998754
No 149
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=65.61 E-value=11 Score=37.63 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=26.8
Q ss_pred CcEEEEecC--CChHhHHHHHHHHHHhcCCceee
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~~ 74 (407)
..+|.++|- .|||||+.-|+..|+..|.++..
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~l 133 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCL 133 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 468888875 58999999999999999988753
No 150
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=65.44 E-value=5.7 Score=39.40 Aligned_cols=77 Identities=14% Similarity=0.094 Sum_probs=48.2
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHHHhcCCceeecccCCccchhhhhhcccCCCCCCCCcEEEEEecccccccCCcccc
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFC 119 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~ 119 (407)
.-.-|.|+|. .||||-+..|+..+...|.-+.| +..|-... + .+.=++|+=+|.++......-.+.+
T Consensus 262 raeGILIAG~PGaGKsTFaqAlAefy~~~GkiVKT---mEsPRDl~-v-------~~eITQYs~l~g~me~t~DiLLLvR 330 (604)
T COG1855 262 RAEGILIAGAPGAGKSTFAQALAEFYASQGKIVKT---MESPRDLQ-V-------SPEITQYSPLEGDMEKTADILLLVR 330 (604)
T ss_pred hhcceEEecCCCCChhHHHHHHHHHHHhcCcEEee---ccCccccc-C-------ChhhhhcccccCchhhhccEEEEec
Confidence 4456888886 58999999999999999987744 33332111 1 1222456667766543332223468
Q ss_pred ceEEEEecCC
Q 015421 120 PTVSVVLNLT 129 (407)
Q Consensus 120 p~i~viTni~ 129 (407)
||+.|.--+.
T Consensus 331 PDYTIyDEmR 340 (604)
T COG1855 331 PDYTIYDEMR 340 (604)
T ss_pred CCceehhhhh
Confidence 8888865543
No 151
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=65.32 E-value=7 Score=31.29 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=21.4
Q ss_pred cCCChHhHHHHHHHHHHhcCCcee
Q 015421 50 GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 50 GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
|..||||++..++..|.+.|.++.
T Consensus 8 gG~GKTt~a~~la~~l~~~g~~V~ 31 (116)
T cd02034 8 GGVGKTTIAALLARYLAEKGKPVL 31 (116)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEE
Confidence 678999999999999999888763
No 152
>PRK00889 adenylylsulfate kinase; Provisional
Probab=65.28 E-value=11 Score=32.39 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=25.6
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~ 72 (407)
+..+|.++|. .||||++..|+..|...|..+
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v 35 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPV 35 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 4568999985 689999999999998877554
No 153
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=64.69 E-value=19 Score=31.24 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=27.9
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
+..+|-.||= .||||.+..|...|.+.|+.++
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y 55 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVY 55 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 4569999985 5899999999999999998874
No 154
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=64.61 E-value=7.3 Score=39.25 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.2
Q ss_pred ecC-CChHhHHHHHHHHHHhcCCce
Q 015421 49 TGT-NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 49 TGT-nGKTTt~~~l~~iL~~~g~~~ 72 (407)
|+| .|||+++..|...|++.|+++
T Consensus 7 T~t~vGKT~vt~~L~~~L~~~G~~V 31 (449)
T TIGR00379 7 TSSGVGKTTISTGIMKALSRRKLRV 31 (449)
T ss_pred CCCCCcHHHHHHHHHHHHHHCCCce
Confidence 344 799999999999999999887
No 155
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=64.15 E-value=11 Score=40.45 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=28.7
Q ss_pred CCCcEEEEecCC---ChHhHHHHHHHHHHhcCCcee
Q 015421 41 RSIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 41 ~~~~~I~VTGTn---GKTTt~~~l~~iL~~~g~~~~ 73 (407)
...++|.||++. ||||++.-|+..|...|.++.
T Consensus 529 ~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVL 564 (726)
T PRK09841 529 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVL 564 (726)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 356899999865 999999999999999998873
No 156
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=63.26 E-value=12 Score=32.41 Aligned_cols=30 Identities=23% Similarity=0.511 Sum_probs=24.7
Q ss_pred EEEEecC--CChHhHHHHHHHHHHhcCCceee
Q 015421 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (407)
Q Consensus 45 ~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~~ 74 (407)
+|+|.|. .||||.+..|+..|...|..+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~ 33 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVL 33 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 5777774 58999999999999998887643
No 157
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=63.07 E-value=10 Score=39.59 Aligned_cols=36 Identities=28% Similarity=0.319 Sum_probs=30.9
Q ss_pred CCcEEEEec--CCChHhHHHHHHHHHHhcCCceeeccc
Q 015421 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (407)
Q Consensus 42 ~~~~I~VTG--TnGKTTt~~~l~~iL~~~g~~~~~~g~ 77 (407)
.+++|+|+| -.||||...-|-..|++.|+++++.-+
T Consensus 9 ~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh 46 (597)
T PRK14491 9 SIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKH 46 (597)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEc
Confidence 468999999 679999999999999999998865443
No 158
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=62.86 E-value=12 Score=36.19 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=28.6
Q ss_pred CCcEEEE----ecCCChHhHHHHHHHHHHhcCCcee
Q 015421 42 SIKILAV----TGTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 42 ~~~~I~V----TGTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
..|||.| .|-.|||-++.+|+..|++.|++++
T Consensus 55 pvPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~ 90 (338)
T PRK01906 55 GVPVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPG 90 (338)
T ss_pred CCCEEEECCccCCCCChHHHHHHHHHHHHHcCCceE
Confidence 5688987 4999999999999999999999874
No 159
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=62.65 E-value=1.7e+02 Score=29.21 Aligned_cols=88 Identities=18% Similarity=0.069 Sum_probs=49.0
Q ss_pred HcCCCHHHHHHHhhcCCCCCCc-eeEEee-ec--CCEEEEEcC-----CCCCHHHHHHHHhccCCCcEEEEECCCCCCCC
Q 015421 237 DIGVDVEALNSTIEILRTPPHR-MQIVHR-DI--QGVTWVDDS-----KATNLEATCTGLMDLKGHKCVILLGGQAKVLN 307 (407)
Q Consensus 237 ~lgi~~~~i~~~L~~~~~~~gR-~e~~~~-~~--~~~~iidD~-----~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~ 307 (407)
.-.+|.+.+.+-..+-.+.+.. ...... .. ..+-|..|. |.+|.+..+.+ +--++-|....|..
T Consensus 212 ~~~vDld~l~~ia~~~~~~~~~~~~~~~~~~~~~~rIAVA~D~AF~FyY~~nl~~Lr~~------GAelv~FSPL~D~~- 284 (451)
T COG1797 212 EKHVDLDALLEIASSAGPLEPDLSPEPERGNPLGVRIAVARDAAFNFYYPENLELLREA------GAELVFFSPLADEE- 284 (451)
T ss_pred HhhCCHHHHHHHHhccCCCCCCccccccccCCcCceEEEEecchhccccHHHHHHHHHC------CCEEEEeCCcCCCC-
Confidence 4468888887766543222222 221110 11 125566665 66777666542 12355566654321
Q ss_pred CCCCcchHhhhhhcc-CccEEEEeCCChHHHHHHHHhC
Q 015421 308 GQESNGFEKLIEPLN-HHRCVITFGYSGVLIWKTLVNN 344 (407)
Q Consensus 308 ~~~~~~~~~~~~~l~-~~~~v~~~g~~~~~~~~~l~~~ 344 (407)
+. ..|.+++-|..++..++.|..+
T Consensus 285 -------------lP~~~D~vYlgGGYPElfA~~L~~n 309 (451)
T COG1797 285 -------------LPPDVDAVYLGGGYPELFAEELSAN 309 (451)
T ss_pred -------------CCCCCCEEEeCCCChHHHHHHHhhC
Confidence 22 2689999998888888877543
No 160
>PRK08233 hypothetical protein; Provisional
Probab=62.62 E-value=7.5 Score=33.33 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=20.2
Q ss_pred CcEEEEecC--CChHhHHHHHHHHHH
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQMLN 66 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL~ 66 (407)
..+|+|+|. .||||.+..|+..|.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 468999886 589999999998875
No 161
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=62.13 E-value=6.8 Score=38.54 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=18.3
Q ss_pred cEEEEecC--CChHhHHHHHHHHHHhc
Q 015421 44 KILAVTGT--NGKSTVVTFVGQMLNHL 68 (407)
Q Consensus 44 ~~I~VTGT--nGKTTt~~~l~~iL~~~ 68 (407)
.+|.+.|. .|||||+.-|++.+...
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~ 201 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGIN 201 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 45555554 37999999999888743
No 162
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=62.12 E-value=7.5 Score=39.47 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=22.4
Q ss_pred EEecC---CChHhHHHHHHHHHHhcCCce
Q 015421 47 AVTGT---NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 47 ~VTGT---nGKTTt~~~l~~iL~~~g~~~ 72 (407)
.|||| .|||.++..|...|++.|+++
T Consensus 2 ~I~GT~t~vGKT~v~~~L~~~l~~~G~~v 30 (475)
T TIGR00313 2 MVVGTTSSAGKSTLTAGLCRILARRGYRV 30 (475)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHhCCCeE
Confidence 35544 799999999999999999886
No 163
>PRK05480 uridine/cytidine kinase; Provisional
Probab=62.00 E-value=9.6 Score=33.76 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=21.7
Q ss_pred CCCcEEEEecC--CChHhHHHHHHHHH
Q 015421 41 RSIKILAVTGT--NGKSTVVTFVGQML 65 (407)
Q Consensus 41 ~~~~~I~VTGT--nGKTTt~~~l~~iL 65 (407)
.+..+|+|+|- .||||.+..|...|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999987 58999999999988
No 164
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=60.73 E-value=13 Score=35.76 Aligned_cols=32 Identities=22% Similarity=0.537 Sum_probs=29.0
Q ss_pred CCcEEEE----ecCCChHhHHHHHHHHHHhcCCcee
Q 015421 42 SIKILAV----TGTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 42 ~~~~I~V----TGTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
+.|+|.| +|-.|||-++.+|...|++.|++++
T Consensus 34 ~vpVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~ 69 (326)
T PF02606_consen 34 PVPVISVGNLTVGGTGKTPLVIWLARLLQARGYRPA 69 (326)
T ss_pred CCcEEEEcccccCCCCchHHHHHHHHHHHhcCCceE
Confidence 6789988 4999999999999999999999874
No 165
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=60.64 E-value=6.7 Score=34.38 Aligned_cols=21 Identities=29% Similarity=0.722 Sum_probs=17.7
Q ss_pred EEEEec--CCChHhHHHHHHHHH
Q 015421 45 ILAVTG--TNGKSTVVTFVGQML 65 (407)
Q Consensus 45 ~I~VTG--TnGKTTt~~~l~~iL 65 (407)
+|+|+| ..||||.+..|...|
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 478888 479999999998886
No 166
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=60.53 E-value=13 Score=32.30 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=25.9
Q ss_pred CcEEEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~ 72 (407)
.+.|.|.|. .||||.+.+|+.-|...|+++
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v 34 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDV 34 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 467889886 589999999999999988776
No 167
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=60.47 E-value=7 Score=33.04 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=17.5
Q ss_pred EEEEecCCChHhHHHHHHHHHHhc
Q 015421 45 ILAVTGTNGKSTVVTFVGQMLNHL 68 (407)
Q Consensus 45 ~I~VTGTnGKTTt~~~l~~iL~~~ 68 (407)
++||+|| ||||+..+|.+-|+-.
T Consensus 17 vmGvsGs-GKSTigk~L~~~l~~~ 39 (191)
T KOG3354|consen 17 VMGVSGS-GKSTIGKALSEELGLK 39 (191)
T ss_pred EEecCCC-ChhhHHHHHHHHhCCc
Confidence 4555554 8999999999988743
No 168
>PTZ00301 uridine kinase; Provisional
Probab=60.44 E-value=10 Score=33.88 Aligned_cols=26 Identities=23% Similarity=0.380 Sum_probs=20.6
Q ss_pred CCcEEEEec--CCChHhHHHHHHHHHHh
Q 015421 42 SIKILAVTG--TNGKSTVVTFVGQMLNH 67 (407)
Q Consensus 42 ~~~~I~VTG--TnGKTTt~~~l~~iL~~ 67 (407)
+..+|||+| ..||||.+..|..-|..
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~ 29 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMA 29 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHHHh
Confidence 357999998 46899999988766653
No 169
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=60.33 E-value=15 Score=32.49 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=19.9
Q ss_pred EEEecCCChHhHHHHHHHHHHhcCCcee
Q 015421 46 LAVTGTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 46 I~VTGTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
||-|| .|||||..=|++-+...+.++.
T Consensus 7 vGptG-vGKTTt~aKLAa~~~~~~~~v~ 33 (196)
T PF00448_consen 7 VGPTG-VGKTTTIAKLAARLKLKGKKVA 33 (196)
T ss_dssp EESTT-SSHHHHHHHHHHHHHHTT--EE
T ss_pred ECCCC-CchHhHHHHHHHHHhhccccce
Confidence 44444 4899999999999998888874
No 170
>PLN02796 D-glycerate 3-kinase
Probab=60.06 E-value=14 Score=35.64 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=25.0
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHHhcCCce
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~ 72 (407)
+.-+|+|+|.+ ||||++..|..+|...|..+
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~ 131 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNATGRRA 131 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcccCCce
Confidence 34579999975 79999999999998766544
No 171
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=59.97 E-value=10 Score=33.65 Aligned_cols=27 Identities=26% Similarity=0.333 Sum_probs=22.4
Q ss_pred CCCcEEEEecC--CChHhHHHHHHHHHHh
Q 015421 41 RSIKILAVTGT--NGKSTVVTFVGQMLNH 67 (407)
Q Consensus 41 ~~~~~I~VTGT--nGKTTt~~~l~~iL~~ 67 (407)
+...+|+|+|. .||||.+..|...|..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45679999996 5899999999988864
No 172
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=59.48 E-value=15 Score=34.74 Aligned_cols=146 Identities=17% Similarity=0.103 Sum_probs=66.4
Q ss_pred eeeccccC-cCcHHHHHH-HhcCCcee--eHHH----HHH-hhCCCCCcEEEEecC---CChHhHHHHHHHHHHhcCCce
Q 015421 5 WLFLLEFQ-LKATGLACL-LQSGKRVM--SELD----FAA-QVIPRSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 5 ~~~~~~~~-~~~p~l~~a-~~~~~~~l--~~~~----~~~-~~~~~~~~~I~VTGT---nGKTTt~~~l~~iL~~~g~~~ 72 (407)
||.+.+.. .++|++.++ .+.|..+. +++. .+. +...-+.++|++-|| .||=||+.+|...|+++|+++
T Consensus 65 IvsGLH~~L~ddpel~~~A~~~g~~i~DvR~p~~~~~~~~g~~~~~~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a 144 (301)
T PF07755_consen 65 IVSGLHDFLSDDPELAAAAKKNGVRIIDVRKPPKDLPVASGRIREVKAKRVLTVGTDCAVGKMTTALELRRALRERGINA 144 (301)
T ss_dssp EEE-SSS-HCCHHHHHCCHHCCT--EEETTS--SS-----SGGGG-SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--E
T ss_pred EEecChhhhccCHHHHHHHHHcCCeEeeccCCCcccccccCccccCCCCEEEEEccCccccHHHHHHHHHHHHHHcCCCc
Confidence 44444444 667777554 44466553 2231 111 111116789999997 699999999999999999997
Q ss_pred eeccc---------CCccchhhhhhcc-------cCCCCCCCCcEEEEEecccccc------cCCcc--ccceEEEE-ec
Q 015421 73 FVGGN---------LGNPLSEAAFHCI-------ALPSSKPKFQVAVVEVSSYQME------IPNKY--FCPTVSVV-LN 127 (407)
Q Consensus 73 ~~~g~---------~g~~~~~~~~~~~-------~~~~~~~~~~~~V~E~g~~~l~------~~~~~--~~p~i~vi-Tn 127 (407)
...++ .|.++.....++. ...... +.|+.++|-=+.=+. .+..+ .+||..|+ ..
T Consensus 145 ~fvaTGQTGimia~~Gv~iDav~~DFvaGavE~~v~~~~~-~~d~ivVEGQgsL~hPay~gvsl~lL~Gs~Pd~lVL~H~ 223 (301)
T PF07755_consen 145 GFVATGQTGIMIAGYGVPIDAVPSDFVAGAVEALVPEAAE-EHDWIVVEGQGSLSHPAYSGVSLGLLHGSQPDALVLCHA 223 (301)
T ss_dssp EEEE-SHHHHHCHSEC--GGGSBGGGHHHHHHHHHHHHCC-C-SEEEEE--S-TTSTTTHHCHHHHHHHH--SEEEEEEE
T ss_pred eEEecCCceEEEecCCeeccchhhhhHHHHHHHHHHhhCc-CCCEEEEeccccccCccccccchhhhccCCCCeEEEEec
Confidence 43222 2444332211110 000112 338899995321110 01111 36776544 45
Q ss_pred CChhhhccC-----CCHHHHHHHHHHhhc
Q 015421 128 LTPDHLERH-----KTMKNYALTKCHLFS 151 (407)
Q Consensus 128 i~~dHl~~~-----~t~e~i~~~K~~i~~ 151 (407)
-++-|++.| +++++..+.-..+..
T Consensus 224 p~r~~~~~~p~~~ip~l~~~I~l~e~la~ 252 (301)
T PF07755_consen 224 PGRKHRDGFPHYPIPPLEEEIELIEALAG 252 (301)
T ss_dssp TT-SC-TTSTTSC---HHHHHHHHHHCCC
T ss_pred CCcccccCCCcCCCCCHHHHHHHHHHhhc
Confidence 555666554 466666655554443
No 173
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=59.38 E-value=13 Score=35.52 Aligned_cols=32 Identities=25% Similarity=0.521 Sum_probs=28.3
Q ss_pred CCcEEEE----ecCCChHhHHHHHHHHHHhcCCcee
Q 015421 42 SIKILAV----TGTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 42 ~~~~I~V----TGTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
..|||.| .|-+|||-++-+|+.-|++.|.+++
T Consensus 46 pvPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~g 81 (336)
T COG1663 46 PVPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVG 81 (336)
T ss_pred CCCEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeE
Confidence 3678876 5999999999999999999999984
No 174
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=59.01 E-value=16 Score=34.51 Aligned_cols=34 Identities=32% Similarity=0.487 Sum_probs=28.8
Q ss_pred CCCcEEEEecC--CChHhHHHHHHHHHHhcCCceee
Q 015421 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (407)
Q Consensus 41 ~~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~~ 74 (407)
...++|+|+|. .||||++..+...+...|.++..
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~ 67 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAV 67 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 35789999986 57999999999999999988743
No 175
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=58.99 E-value=8 Score=32.70 Aligned_cols=19 Identities=26% Similarity=0.548 Sum_probs=14.7
Q ss_pred EEEecC--CChHhHHHHHHHH
Q 015421 46 LAVTGT--NGKSTVVTFVGQM 64 (407)
Q Consensus 46 I~VTGT--nGKTTt~~~l~~i 64 (407)
|+|||+ .||||++..|+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 788986 6899999998866
No 176
>PRK07429 phosphoribulokinase; Provisional
Probab=57.79 E-value=11 Score=36.11 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=23.2
Q ss_pred CCCcEEEEecC--CChHhHHHHHHHHHHhc
Q 015421 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHL 68 (407)
Q Consensus 41 ~~~~~I~VTGT--nGKTTt~~~l~~iL~~~ 68 (407)
.+..+|+|+|. .||||.+..|..+|...
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~ 35 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEE 35 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhccC
Confidence 34569999995 58999999999999754
No 177
>PRK13768 GTPase; Provisional
Probab=57.43 E-value=16 Score=33.63 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=22.7
Q ss_pred EEEEe--cCCChHhHHHHHHHHHHhcCCce
Q 015421 45 ILAVT--GTNGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 45 ~I~VT--GTnGKTTt~~~l~~iL~~~g~~~ 72 (407)
+|.|+ |..||||++.-++..|+..|.++
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v 33 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDV 33 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCce
Confidence 45555 55789999999999999888765
No 178
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=56.86 E-value=9.4 Score=33.46 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=18.0
Q ss_pred EEEEecC--CChHhHHHHHHHHH
Q 015421 45 ILAVTGT--NGKSTVVTFVGQML 65 (407)
Q Consensus 45 ~I~VTGT--nGKTTt~~~l~~iL 65 (407)
+|+|+|- .||||++.+|..+|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 4788875 58999999999998
No 179
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=56.61 E-value=9.8 Score=33.62 Aligned_cols=26 Identities=19% Similarity=0.397 Sum_probs=21.8
Q ss_pred CcEEEEec--CCChHhHHHHHHHHHHhc
Q 015421 43 IKILAVTG--TNGKSTVVTFVGQMLNHL 68 (407)
Q Consensus 43 ~~~I~VTG--TnGKTTt~~~l~~iL~~~ 68 (407)
.-+|||+| ..||||.+..|..+|..+
T Consensus 4 ~~ivgiSG~TnsGKTTLak~l~~~f~~~ 31 (225)
T KOG3308|consen 4 TLIVGISGCTNSGKTTLAKSLHRFFPGC 31 (225)
T ss_pred EEEEEeecccCCCHhHHHHHHHHHccCC
Confidence 45899998 469999999999998754
No 180
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=56.40 E-value=8.7 Score=35.88 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=20.6
Q ss_pred EEEEecCC--ChHhHHHHHHHHHHhcC
Q 015421 45 ILAVTGTN--GKSTVVTFVGQMLNHLG 69 (407)
Q Consensus 45 ~I~VTGTn--GKTTt~~~l~~iL~~~g 69 (407)
+|+|+|.+ ||||.+.+|..+|...+
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~ 27 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDL 27 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCc
Confidence 47888865 79999999999997554
No 181
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=56.36 E-value=14 Score=28.78 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=21.8
Q ss_pred ecCCChHhHHHHHHHHHHhc-CCcee
Q 015421 49 TGTNGKSTVVTFVGQMLNHL-GIEAF 73 (407)
Q Consensus 49 TGTnGKTTt~~~l~~iL~~~-g~~~~ 73 (407)
-|-.||||++.-|+..+.+. |.++.
T Consensus 8 kgg~gkt~~~~~la~~~~~~~~~~~~ 33 (106)
T cd03111 8 KGGVGATTLAANLAVALAKEAGRRVL 33 (106)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEE
Confidence 47789999999999999998 88773
No 182
>PRK11519 tyrosine kinase; Provisional
Probab=55.90 E-value=19 Score=38.64 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=28.6
Q ss_pred CCCcEEEEec---CCChHhHHHHHHHHHHhcCCcee
Q 015421 41 RSIKILAVTG---TNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 41 ~~~~~I~VTG---TnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
...++|.||+ -.||||++.-|+..|...|.++.
T Consensus 524 ~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvL 559 (719)
T PRK11519 524 AQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVL 559 (719)
T ss_pred CCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEE
Confidence 3567999997 56999999999999999998873
No 183
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=55.42 E-value=11 Score=32.15 Aligned_cols=25 Identities=36% Similarity=0.648 Sum_probs=22.1
Q ss_pred CcEEEEec--CCChHhHHHHHHHHHHh
Q 015421 43 IKILAVTG--TNGKSTVVTFVGQMLNH 67 (407)
Q Consensus 43 ~~~I~VTG--TnGKTTt~~~l~~iL~~ 67 (407)
.|+|+|+| |.||||...-|+.++..
T Consensus 8 ~K~VailG~ESsGKStLv~kLA~~fnt 34 (187)
T COG3172 8 VKTVAILGGESSGKSTLVNKLANIFNT 34 (187)
T ss_pred heeeeeecCcccChHHHHHHHHHHhCC
Confidence 57899998 79999999999999875
No 184
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=55.37 E-value=6.2 Score=33.05 Aligned_cols=22 Identities=36% Similarity=0.394 Sum_probs=17.5
Q ss_pred EEecCCChHhHHHHHHHHHHhcC
Q 015421 47 AVTGTNGKSTVVTFVGQMLNHLG 69 (407)
Q Consensus 47 ~VTGTnGKTTt~~~l~~iL~~~g 69 (407)
||+|| ||||+..+|++-|....
T Consensus 2 GVsG~-GKStvg~~lA~~lg~~f 23 (161)
T COG3265 2 GVSGS-GKSTVGSALAERLGAKF 23 (161)
T ss_pred CCCcc-CHHHHHHHHHHHcCCce
Confidence 56664 99999999999887543
No 185
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=55.17 E-value=17 Score=25.81 Aligned_cols=21 Identities=48% Similarity=0.683 Sum_probs=17.4
Q ss_pred EEEEecC--CChHhHHHHHHHHH
Q 015421 45 ILAVTGT--NGKSTVVTFVGQML 65 (407)
Q Consensus 45 ~I~VTGT--nGKTTt~~~l~~iL 65 (407)
+|+|+|. .||||.+..|...|
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 3677775 58999999999999
No 186
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=55.11 E-value=10 Score=34.66 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=17.3
Q ss_pred CChHhHHHHHHHHHHhcCCce
Q 015421 52 NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 52 nGKTTt~~~l~~iL~~~g~~~ 72 (407)
.||||-+.-+.+.++..|+++
T Consensus 7 SGKTT~~~~~~~~~~~~~~~~ 27 (238)
T PF03029_consen 7 SGKTTFCKGLSEWLESNGRDV 27 (238)
T ss_dssp SSHHHHHHHHHHHHTTT-S-E
T ss_pred CCHHHHHHHHHHHHHhccCCc
Confidence 499999999999999988765
No 187
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=54.15 E-value=23 Score=35.26 Aligned_cols=31 Identities=16% Similarity=0.303 Sum_probs=25.7
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHHhcCCce
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~ 72 (407)
+.-+|||+|-+ ||||.+..|..+|+..|.++
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~v 243 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKS 243 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCce
Confidence 35689999975 79999999999998776655
No 188
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=53.84 E-value=13 Score=32.84 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=19.9
Q ss_pred cEEEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 44 ~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~ 72 (407)
.+|+|||. .||||.+.++.. .|..+
T Consensus 2 ~~igitG~igsGKst~~~~l~~----~g~~v 28 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS----EGFLI 28 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH----CCCeE
Confidence 57999997 589999999874 46655
No 189
>PRK00698 tmk thymidylate kinase; Validated
Probab=53.76 E-value=22 Score=31.00 Aligned_cols=30 Identities=23% Similarity=0.467 Sum_probs=24.8
Q ss_pred CcEEEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~ 72 (407)
..+|.|.|- .||||.+..|+.-|...|..+
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~ 34 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDV 34 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCce
Confidence 467888884 689999999999998877554
No 190
>PRK04040 adenylate kinase; Provisional
Probab=53.02 E-value=18 Score=31.70 Aligned_cols=29 Identities=31% Similarity=0.403 Sum_probs=22.0
Q ss_pred CcEEEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~ 72 (407)
.++|+|||. .||||.+..|..-|. .++.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~-~~~~~ 32 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK-EDYKI 32 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc-cCCeE
Confidence 357888886 589999999999885 23444
No 191
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=52.86 E-value=71 Score=31.88 Aligned_cols=94 Identities=13% Similarity=0.156 Sum_probs=59.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhccC---CCcEEEE--ECCCCCCCCCCCCcchHhhhhhccC--cc-EEE--EeCCChHH
Q 015421 267 QGVTWVDDSKATNLEATCTGLMDLK---GHKCVIL--LGGQAKVLNGQESNGFEKLIEPLNH--HR-CVI--TFGYSGVL 336 (407)
Q Consensus 267 ~~~~iidD~~a~np~s~~~al~~~~---~~~~i~V--~g~~~~~~~~~~~~~~~~~~~~l~~--~~-~v~--~~g~~~~~ 336 (407)
.+..++|=.++.+.+.+..+++-+. .-+.|+| ||+....+. ..+-+.+.+.. .+ .++ +.|.+.+.
T Consensus 317 ~pANFlD~GG~a~~~~v~~a~~ii~~d~~vk~iliNIfGGI~~cd~-----iA~gii~a~~~~~~~~pivvRl~Gtn~~~ 391 (422)
T PLN00124 317 SPANFLDVGGNASEQQVVEAFKILTSDDKVKAILVNIFGGIMKCDV-----IASGIVNAAKQVGLKVPLVVRLEGTNVDQ 391 (422)
T ss_pred CcceeeecCCCCCHHHHHHHHHHHhcCCCCcEEEEEecCCccchHH-----HHHHHHHHHHhcCCCCcEEEEcCCCCHHH
Confidence 3455665446789999999998763 2355665 777643321 12234443321 11 122 34888888
Q ss_pred HHHHHHhCCCCccccccccHHHHHHHHHHhc
Q 015421 337 IWKTLVNNGLSIPCFAVANMKDAVNHARRMA 367 (407)
Q Consensus 337 ~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~ 367 (407)
-.+.++..+. ++.+++|+++|++.+.+.+
T Consensus 392 g~~~l~~~~~--~~~~~~~l~~A~~~~v~~~ 420 (422)
T PLN00124 392 GKRILKESGM--TLITAEDLDDAAEKAVKAL 420 (422)
T ss_pred HHHHHHhCCC--CeEEcCCHHHHHHHHHHHh
Confidence 8888877654 5788999999999998653
No 192
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=52.56 E-value=16 Score=31.47 Aligned_cols=28 Identities=39% Similarity=0.636 Sum_probs=20.9
Q ss_pred EEEEecC--CChHhHHHHHHHHHHhcCCceeecc
Q 015421 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (407)
Q Consensus 45 ~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~~~g 76 (407)
+|+|||. .||||.+.++.. .|+.+....
T Consensus 1 ii~itG~~gsGKst~~~~l~~----~g~~~i~~D 30 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE----LGIPVIDAD 30 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH----CCCCEEecC
Confidence 4899986 689999999887 466654333
No 193
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=52.46 E-value=17 Score=33.45 Aligned_cols=30 Identities=30% Similarity=0.449 Sum_probs=24.7
Q ss_pred cEEEEec----CCChHhHHHHHHHHHHhcCCcee
Q 015421 44 KILAVTG----TNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 44 ~~I~VTG----TnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
+.|.||| +-||+-|++-|..+|+.+|+++.
T Consensus 2 KyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~ 35 (276)
T PF06418_consen 2 KYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVT 35 (276)
T ss_dssp EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EE
T ss_pred cEEEEeCCccccccHHHHHHHHHHHHHhCCeeee
Confidence 5688887 56999999999999999999873
No 194
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=52.40 E-value=1.5e+02 Score=25.23 Aligned_cols=144 Identities=14% Similarity=0.126 Sum_probs=79.6
Q ss_pred CChHhHHHHHHHHHHhcCCceeecccCCccchhhhhhcccCCCCCCCCcEEEEEeccc-ccccCCccccceEEEEecCCh
Q 015421 52 NGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY-QMEIPNKYFCPTVSVVLNLTP 130 (407)
Q Consensus 52 nGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~g~~-~l~~~~~~~~p~i~viTni~~ 130 (407)
-|=-|+..+|+..+...|+.+......|.-. +..+-++-+-+|.. ...... .-++|+.|..+-
T Consensus 3 qGv~t~g~ila~a~~~~G~~v~~~~~ygs~~-------------rGG~~~~~vris~~~~~~~~~-~~~~Dilv~l~~-- 66 (173)
T PF01558_consen 3 QGVVTAGKILARAAAREGYYVQSTPEYGSEI-------------RGGPVVSHVRISDEPIIPSPP-VGEADILVALDP-- 66 (173)
T ss_dssp STHHHHHHHHHHHHHHTTSEEEEEEEEESSS-------------SSSCEEEEEEEESS--SSSS--TSSESEEEESSH--
T ss_pred cHHHHHHHHHHHHHHHcCCCEEEEeCCChhh-------------cCCeEEEEEEEecCcCccCcc-cCCCCEEEEcCH--
Confidence 3555888999999999999886555544321 33444455556643 222222 247888888752
Q ss_pred hhhccCCCHHHHHHHHHHhhcccCCCceEEEeCCChhhHHHHhcccc------ceEEeecCCCcccccccccceeEeccC
Q 015421 131 DHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRF------NLAWIGAFPGVKIDTEAKTASFEVPAV 204 (407)
Q Consensus 131 dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (407)
+.+ ...+..+++++++|+|.+...-......... +++ .++..
T Consensus 67 ---------~~~----~~~~~~l~~~g~vi~ns~~~~~~~~~~~~~~~~~~~~~v~-------------------~ip~~ 114 (173)
T PF01558_consen 67 ---------EAL----ERHLKGLKPGGVVIINSSLVKPEPEEKDKPAYFPRIERVI-------------------GIPAT 114 (173)
T ss_dssp ---------HHH----HHCGTTCETTEEEEEETTT-CHHHHHHHCCCHHHHHCEEE-------------------EE-HH
T ss_pred ---------HHH----HHHhcCcCcCeEEEEECCCCCcHhHhhccccccccceeEE-------------------eccHH
Confidence 222 1556667889999999864222211111100 111 11100
Q ss_pred CeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcC
Q 015421 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252 (407)
Q Consensus 205 ~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~ 252 (407)
. .-....+.....|.++.- +++..++++.+.+.++++..
T Consensus 115 ~-------ia~~~~~~~~~~N~~~lG--a~~~~~~l~~e~~~~~i~~~ 153 (173)
T PF01558_consen 115 E-------IAKELGGNPRFANMVMLG--ALAKLLGLPLESLEEAIKER 153 (173)
T ss_dssp H-------HHHHTTS-GGGHHHHHHH--HHHHHHTS-HHHHHHHHHHH
T ss_pred H-------HHHhhhcchhhHHHHHHH--HHHHHcCCCHHHHHHHHHHH
Confidence 0 011223335667776554 67888899999999998773
No 195
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=51.98 E-value=14 Score=32.93 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=21.0
Q ss_pred CcEEEEecC--CChHhHHHHHHHHHH
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQMLN 66 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL~ 66 (407)
..+|+|.|+ .||||.+.+|+.=|.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 568999997 689999999998876
No 196
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=51.49 E-value=15 Score=29.01 Aligned_cols=20 Identities=25% Similarity=0.572 Sum_probs=15.6
Q ss_pred EEEecC--CChHhHHHHHHHHH
Q 015421 46 LAVTGT--NGKSTVVTFVGQML 65 (407)
Q Consensus 46 I~VTGT--nGKTTt~~~l~~iL 65 (407)
|.|+|. .||||++..|..-+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 445554 48999999999997
No 197
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=51.34 E-value=18 Score=31.04 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=23.0
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHHhcCCceeecc
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~~~~g 76 (407)
+.++|.|.|.. ||||.+..|+.-+ |+.+...|
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~---g~~~~~~g 35 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY---GFTHLSTG 35 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh---CCcEEeHH
Confidence 46788888864 7999999998765 55554333
No 198
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=51.29 E-value=20 Score=38.76 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=27.4
Q ss_pred CCcEEEEe---cCCChHhHHHHHHHHHHhcCCcee
Q 015421 42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 42 ~~~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
..++|+|| |..||||++.-|+..|...|.++.
T Consensus 545 ~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvL 579 (754)
T TIGR01005 545 EPEVVETQRPRPVLGKSDIEANAAALIASGGKRAL 579 (754)
T ss_pred CceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEE
Confidence 45789998 557999999999999999998773
No 199
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=51.27 E-value=25 Score=34.83 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=24.8
Q ss_pred CcEEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
..+|++.|- .|||||...|+.-|...|.++.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVg 273 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVG 273 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEE
Confidence 356777765 4799999999999988887774
No 200
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=51.24 E-value=18 Score=30.63 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=21.8
Q ss_pred cCCChHhHHHHHHHHHHhcCCceee
Q 015421 50 GTNGKSTVVTFVGQMLNHLGIEAFV 74 (407)
Q Consensus 50 GTnGKTTt~~~l~~iL~~~g~~~~~ 74 (407)
+-.|||+++.-|...|++.|.+++.
T Consensus 7 ~~~GKT~va~~L~~~l~~~g~~V~~ 31 (166)
T TIGR00347 7 TGVGKTVASSALAAKLKKAGYSVGY 31 (166)
T ss_pred CCccHHHHHHHHHHHHHHCCCcEEE
Confidence 3479999999999999999998844
No 201
>PRK06547 hypothetical protein; Provisional
Probab=51.12 E-value=25 Score=30.29 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=20.2
Q ss_pred CCCcEEEEecCC--ChHhHHHHHHHHH
Q 015421 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (407)
Q Consensus 41 ~~~~~I~VTGTn--GKTTt~~~l~~iL 65 (407)
....+|+|+|.. ||||++..|+..+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789998765 6999999998875
No 202
>PRK07933 thymidylate kinase; Validated
Probab=51.09 E-value=24 Score=31.48 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=24.2
Q ss_pred EEEEec--CCChHhHHHHHHHHHHhcCCcee
Q 015421 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 45 ~I~VTG--TnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
.|+|-| -.||||.+.+|..-|+..|.++.
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~ 32 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVA 32 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 466666 36999999999999999998774
No 203
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=51.05 E-value=24 Score=33.05 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=23.1
Q ss_pred CcEEEEecC--CChHhHHHHHHHHHHhc-C-Cce
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQMLNHL-G-IEA 72 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL~~~-g-~~~ 72 (407)
..+|++.|. .|||||+..|+..+... | .++
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V 227 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKV 227 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeE
Confidence 457888875 47999999999988765 4 555
No 204
>PLN02422 dephospho-CoA kinase
Probab=50.97 E-value=15 Score=33.31 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=20.9
Q ss_pred cEEEEecC--CChHhHHHHHHHHHHhcCCceee
Q 015421 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (407)
Q Consensus 44 ~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~~ 74 (407)
++|+|||. .||||++.++.. .|..+..
T Consensus 2 ~~igltG~igsGKstv~~~l~~----~g~~~id 30 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFKS----SGIPVVD 30 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHHH----CCCeEEe
Confidence 47999986 689999998873 5776643
No 205
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=50.71 E-value=14 Score=34.76 Aligned_cols=25 Identities=40% Similarity=0.574 Sum_probs=21.0
Q ss_pred EEEEecCCChHhHHHHHHHHHHhcCC
Q 015421 45 ILAVTGTNGKSTVVTFVGQMLNHLGI 70 (407)
Q Consensus 45 ~I~VTGTnGKTTt~~~l~~iL~~~g~ 70 (407)
+.|=+|| |||+++..++..+...|.
T Consensus 63 l~G~pGT-GKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 63 FTGNPGT-GKTTVALRMAQILHRLGY 87 (284)
T ss_pred EEcCCCC-CHHHHHHHHHHHHHHcCC
Confidence 4566788 999999999999988764
No 206
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=50.55 E-value=32 Score=29.03 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=28.1
Q ss_pred CCCcEEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 41 ~~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
++.-+|-|||- .||+|.+-.|.+.|-+.|..++
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y 63 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTY 63 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEE
Confidence 35679999985 6899999999999999998764
No 207
>PLN02924 thymidylate kinase
Probab=50.53 E-value=25 Score=31.65 Aligned_cols=32 Identities=28% Similarity=0.401 Sum_probs=27.5
Q ss_pred CCCcEEEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 41 ~~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~ 72 (407)
+..+.|+|.|- .||||-+.+|+..|+..|..+
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v 47 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA 47 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc
Confidence 34568999985 789999999999999999875
No 208
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=50.39 E-value=14 Score=36.80 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=23.5
Q ss_pred CcEEEEecC--CChHhHHHHHHHHHH-hcCCcee
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQMLN-HLGIEAF 73 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL~-~~g~~~~ 73 (407)
..+|.++|. .|||||+.-|+..|. +.|.++.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~ 132 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVL 132 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEE
Confidence 346666664 589999999999886 5787764
No 209
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=50.28 E-value=23 Score=35.91 Aligned_cols=31 Identities=35% Similarity=0.381 Sum_probs=27.7
Q ss_pred CCcEEEEec------CCChHhHHHHHHHHHHhcCCce
Q 015421 42 SIKILAVTG------TNGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 42 ~~~~I~VTG------TnGKTTt~~~l~~iL~~~g~~~ 72 (407)
+.++|.||. --|||||+.=|++.|.+.|.++
T Consensus 37 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gkk~ 73 (524)
T cd00477 37 DGKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKA 73 (524)
T ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCcE
Confidence 568999999 4589999999999999999875
No 210
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=50.23 E-value=19 Score=32.07 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=25.9
Q ss_pred CcEEEEec--CCChHhHHHHHHHHHHhcCCce
Q 015421 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 43 ~~~I~VTG--TnGKTTt~~~l~~iL~~~g~~~ 72 (407)
++.|-+|| ..||||-+.=|+.+|++.+.++
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~v 32 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRV 32 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhc
Confidence 46788888 6899999999999999988665
No 211
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=49.88 E-value=26 Score=35.11 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=25.1
Q ss_pred CcEEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
..+|.++|- .|||||+.-|+..|.+.|+++.
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~ 127 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVG 127 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEE
Confidence 456777764 5899999999999999988774
No 212
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=49.85 E-value=13 Score=32.30 Aligned_cols=21 Identities=38% Similarity=0.689 Sum_probs=16.8
Q ss_pred EEEEecC--CChHhHHHHHHHHH
Q 015421 45 ILAVTGT--NGKSTVVTFVGQML 65 (407)
Q Consensus 45 ~I~VTGT--nGKTTt~~~l~~iL 65 (407)
+|+|||+ .||||++.++....
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~ 23 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY 23 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc
Confidence 4899997 68999998887753
No 213
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=49.82 E-value=23 Score=33.04 Aligned_cols=30 Identities=23% Similarity=0.407 Sum_probs=22.5
Q ss_pred CcEEEEec--CCChHhHHHHHHHHHHhcCCce
Q 015421 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 43 ~~~I~VTG--TnGKTTt~~~l~~iL~~~g~~~ 72 (407)
+|.|.++| ..||||.+.-|...|.+.+..+
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v 32 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEV 32 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHHHTT--E
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEE
Confidence 46788888 6899999999999999955443
No 214
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=49.24 E-value=21 Score=31.90 Aligned_cols=31 Identities=23% Similarity=0.397 Sum_probs=26.0
Q ss_pred CcEEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
...|.|-|- .||||.+.+|+..|++.|+.+.
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~ 35 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKERLEERGIKVV 35 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 456777774 6899999999999999998763
No 215
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=49.23 E-value=29 Score=33.54 Aligned_cols=30 Identities=23% Similarity=0.175 Sum_probs=22.0
Q ss_pred CcEEEEe-cCC-ChHhHHHHHHHHHHhcCCce
Q 015421 43 IKILAVT-GTN-GKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 43 ~~~I~VT-GTn-GKTTt~~~l~~iL~~~g~~~ 72 (407)
.|.+-|. +|+ ||||.+.+|-.-.-..|++.
T Consensus 103 GPrv~vVGp~d~GKsTl~r~L~nyavk~gr~P 134 (415)
T KOG2749|consen 103 GPRVMVVGPTDVGKSTLCRILLNYAVKQGRRP 134 (415)
T ss_pred CCEEEEECCCccchHHHHHHHHHHHHHcCCcc
Confidence 4544444 555 99999999887777778775
No 216
>KOG1324 consensus Dihydrofolate reductase [Coenzyme transport and metabolism]
Probab=49.22 E-value=18 Score=31.17 Aligned_cols=14 Identities=36% Similarity=0.588 Sum_probs=12.0
Q ss_pred hcCCCCCCceeEEe
Q 015421 250 EILRTPPHRMQIVH 263 (407)
Q Consensus 250 ~~~~~~~gR~e~~~ 263 (407)
.+++|++||++++-
T Consensus 61 ~k~RPL~gRiNiVL 74 (190)
T KOG1324|consen 61 EKFRPLPGRINVVL 74 (190)
T ss_pred cccCCCCCceEEEE
Confidence 45899999999985
No 217
>PRK10867 signal recognition particle protein; Provisional
Probab=49.03 E-value=28 Score=34.85 Aligned_cols=31 Identities=16% Similarity=0.279 Sum_probs=25.5
Q ss_pred CcEEEEecC--CChHhHHHHHHHHHHhc-CCcee
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQMLNHL-GIEAF 73 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL~~~-g~~~~ 73 (407)
..+|.++|- .|||||+.-|+..|... |.++.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~ 133 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVL 133 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEE
Confidence 457888875 47999999999999888 88774
No 218
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=48.58 E-value=14 Score=32.60 Aligned_cols=19 Identities=32% Similarity=0.616 Sum_probs=15.2
Q ss_pred EEEEecCC--ChHhHHHHHHH
Q 015421 45 ILAVTGTN--GKSTVVTFVGQ 63 (407)
Q Consensus 45 ~I~VTGTn--GKTTt~~~l~~ 63 (407)
+|+|||.+ ||||++.++..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~ 21 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE 21 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH
Confidence 48999975 79999887764
No 219
>PLN02348 phosphoribulokinase
Probab=48.55 E-value=23 Score=34.84 Aligned_cols=28 Identities=14% Similarity=0.254 Sum_probs=23.8
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHHHhcC
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLG 69 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL~~~g 69 (407)
+..+|+|+|- .||||.+..|..+|...+
T Consensus 48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~ 77 (395)
T PLN02348 48 GTVVIGLAADSGCGKSTFMRRLTSVFGGAA 77 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcc
Confidence 4569999985 689999999999997654
No 220
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=47.65 E-value=15 Score=36.73 Aligned_cols=33 Identities=27% Similarity=0.499 Sum_probs=28.0
Q ss_pred CCCcEEEEecCCChHhHHHHHHHHHHhcCCceee
Q 015421 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFV 74 (407)
Q Consensus 41 ~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~ 74 (407)
++.-+-|=||| |||-|-..|+.-|+..|..|+.
T Consensus 20 RHGLIaGATGT-GKTvTLqvlAE~fS~~GVPVfl 52 (502)
T PF05872_consen 20 RHGLIAGATGT-GKTVTLQVLAEQFSDAGVPVFL 52 (502)
T ss_pred ccceeeccCCC-CceehHHHHHHHhhhcCCcEEE
Confidence 34556777887 9999999999999999998864
No 221
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=47.60 E-value=22 Score=30.88 Aligned_cols=34 Identities=15% Similarity=0.281 Sum_probs=23.9
Q ss_pred HHHHhhCCCCCcEEEEecCC--ChHhHHHHHHHHHHh
Q 015421 33 DFAAQVIPRSIKILAVTGTN--GKSTVVTFVGQMLNH 67 (407)
Q Consensus 33 ~~~~~~~~~~~~~I~VTGTn--GKTTt~~~l~~iL~~ 67 (407)
+++.... +....++|+|.+ ||||+...|...+..
T Consensus 16 ~~l~~~v-~~g~~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 16 AYLWLAV-EARKNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred HHHHHHH-hCCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 3444444 456789999865 899998887776653
No 222
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=47.55 E-value=20 Score=32.21 Aligned_cols=30 Identities=33% Similarity=0.449 Sum_probs=19.9
Q ss_pred CCcEEEEecCCChHhHHHHHHHHHH-hcCCce
Q 015421 42 SIKILAVTGTNGKSTVVTFVGQMLN-HLGIEA 72 (407)
Q Consensus 42 ~~~~I~VTGTnGKTTt~~~l~~iL~-~~g~~~ 72 (407)
+.-++|-||| |||+|...|..=+. ..+..+
T Consensus 25 H~~I~G~TGs-GKS~~~~~ll~~l~~~~~~~~ 55 (229)
T PF01935_consen 25 HIAIFGTTGS-GKSNTVKVLLEELLKKKGAKV 55 (229)
T ss_pred eEEEECCCCC-CHHHHHHHHHHHHHhcCCCCE
Confidence 4457777776 89988877666665 555443
No 223
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=47.45 E-value=33 Score=35.18 Aligned_cols=31 Identities=32% Similarity=0.333 Sum_probs=27.6
Q ss_pred CCcEEEEec------CCChHhHHHHHHHHHHhcCCce
Q 015421 42 SIKILAVTG------TNGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 42 ~~~~I~VTG------TnGKTTt~~~l~~iL~~~g~~~ 72 (407)
+.++|.||. --|||||+.-|++.|.+.|.++
T Consensus 53 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gk~~ 89 (578)
T PRK13506 53 KGKLVLVTAITPTPLGEGKTVTTIGLTQGLNALGQKV 89 (578)
T ss_pred CCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHhCCce
Confidence 468999999 4589999999999999999875
No 224
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=46.99 E-value=22 Score=32.96 Aligned_cols=31 Identities=29% Similarity=0.417 Sum_probs=23.7
Q ss_pred EEEe--cCCChHhHHHHHHHHHHhcCCceeecc
Q 015421 46 LAVT--GTNGKSTVVTFVGQMLNHLGIEAFVGG 76 (407)
Q Consensus 46 I~VT--GTnGKTTt~~~l~~iL~~~g~~~~~~g 76 (407)
|+|= |--|||||+.=|+..|...|.++...|
T Consensus 3 IAiYGKGGIGKST~~~Nlsaala~~G~kVl~iG 35 (273)
T PF00142_consen 3 IAIYGKGGIGKSTTASNLSAALAEMGKKVLQIG 35 (273)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred EEEEcCCCcccChhhhHHHHHHHhccceeeEec
Confidence 4444 678999999999999999999885444
No 225
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=46.80 E-value=36 Score=31.53 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=22.8
Q ss_pred CcEEEEe---cCCChHhHHHHH-HHHHHhcCCce
Q 015421 43 IKILAVT---GTNGKSTVVTFV-GQMLNHLGIEA 72 (407)
Q Consensus 43 ~~~I~VT---GTnGKTTt~~~l-~~iL~~~g~~~ 72 (407)
.++|+|+ |-.||||++.-+ +.+++..|.++
T Consensus 2 ~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V 35 (262)
T COG0455 2 TKVIAVVSGKGGVGKTTITANLGAALAALGGKVV 35 (262)
T ss_pred CEEEEEEecCCCccHHHHHHhHHHHHHhhCCCeE
Confidence 3578887 899999999999 55555556553
No 226
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=46.61 E-value=19 Score=32.85 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.4
Q ss_pred ecCCChHhHHHHHHHHHHhcCCce
Q 015421 49 TGTNGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 49 TGTnGKTTt~~~l~~iL~~~g~~~ 72 (407)
-|-.||||++..++..|...|.++
T Consensus 11 KGGvGKSt~a~~la~~l~~~g~~v 34 (241)
T PRK13886 11 KGGVGKSFIAATIAQYKASKGQKP 34 (241)
T ss_pred CCCCcHHHHHHHHHHHHHhCCCCE
Confidence 378999999999999999988776
No 227
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=46.57 E-value=21 Score=31.66 Aligned_cols=26 Identities=42% Similarity=0.653 Sum_probs=19.7
Q ss_pred CcEEEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~ 72 (407)
..+|+|||. .||||.+.++.. .|..+
T Consensus 5 ~~~igitG~igsGKSt~~~~l~~----~g~~v 32 (208)
T PRK14731 5 PFLVGVTGGIGSGKSTVCRFLAE----MGCEL 32 (208)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH----CCCeE
Confidence 357999997 589999988775 45544
No 228
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=46.57 E-value=24 Score=35.25 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=23.9
Q ss_pred EEEEecC---CChHhHHHHHHHHHHhcCCce
Q 015421 45 ILAVTGT---NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 45 ~I~VTGT---nGKTTt~~~l~~iL~~~g~~~ 72 (407)
.|.|||| .|||+++..|.+.|++.|.++
T Consensus 3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v 33 (433)
T PRK13896 3 GFVLGGTSSGVGKTVATLATIRALEDAGYAV 33 (433)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHCCCee
Confidence 4666665 599999999999999999876
No 229
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=46.24 E-value=20 Score=31.40 Aligned_cols=26 Identities=38% Similarity=0.649 Sum_probs=20.2
Q ss_pred CcEEEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~ 72 (407)
+.+|+|||. .||||++.++.. .|+.+
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~----~g~~~ 29 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE----LGAPV 29 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH----cCCEE
Confidence 357999995 689999998887 36554
No 230
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=46.22 E-value=26 Score=35.90 Aligned_cols=32 Identities=38% Similarity=0.436 Sum_probs=25.5
Q ss_pred CCCcEEEEecCC------ChHhHHHHHHHHHHhcCCce
Q 015421 41 RSIKILAVTGTN------GKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 41 ~~~~~I~VTGTn------GKTTt~~~l~~iL~~~g~~~ 72 (407)
.+.+.|.||+.+ |||||+--|.+.|...|+++
T Consensus 52 ~~gklilVTaitPTp~GEGKtTttiGL~~al~~lg~~~ 89 (557)
T PF01268_consen 52 PDGKLILVTAITPTPAGEGKTTTTIGLAQALNRLGKKA 89 (557)
T ss_dssp ---EEEEEEESS--TTS-SHHHHHHHHHHHHHHTT--E
T ss_pred CCCcEEEEEecCCCCCCCCceeHHHHHHHHHHhcCCce
Confidence 367899999987 99999999999999999886
No 231
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=45.99 E-value=27 Score=30.74 Aligned_cols=28 Identities=36% Similarity=0.602 Sum_probs=20.9
Q ss_pred CcEEEEecCC--ChHhHHHHHHHHH--HhcCC
Q 015421 43 IKILAVTGTN--GKSTVVTFVGQML--NHLGI 70 (407)
Q Consensus 43 ~~~I~VTGTn--GKTTt~~~l~~iL--~~~g~ 70 (407)
..+++|||.| ||||...+++... .+.|.
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~ 60 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGLAVLLAQIGC 60 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHHHHcCC
Confidence 3689999998 7999999998433 34443
No 232
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=45.93 E-value=23 Score=31.18 Aligned_cols=27 Identities=37% Similarity=0.589 Sum_probs=20.5
Q ss_pred cEEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 44 ~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
+.|+|||. .||||++.++...+ |..+.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~---g~~~i 30 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQK---GIPIL 30 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh---CCeEe
Confidence 47999986 68999999988654 55543
No 233
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=45.61 E-value=28 Score=37.94 Aligned_cols=32 Identities=25% Similarity=0.157 Sum_probs=28.9
Q ss_pred CCCcEEEEecCC---ChHhHHHHHHHHHHhcCCce
Q 015421 41 RSIKILAVTGTN---GKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 41 ~~~~~I~VTGTn---GKTTt~~~l~~iL~~~g~~~ 72 (407)
-+.+.+.||||| |||-++..|.+.++..|.++
T Consensus 25 ~~~~~~fI~GtnT~VGKT~vS~~L~~~~~~~g~~~ 59 (817)
T PLN02974 25 LSCPAFAVWGANTAVGKTLVSAGLAAAAASRRSPV 59 (817)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCce
Confidence 468899999997 99999999999999998765
No 234
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=45.53 E-value=20 Score=31.84 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=20.4
Q ss_pred CcEEEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~ 72 (407)
..+||+||. .||||++.++..-| |..+
T Consensus 6 ~~~IglTG~iGsGKStv~~~l~~~l---g~~v 34 (204)
T PRK14733 6 TYPIGITGGIASGKSTATRILKEKL---NLNV 34 (204)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHc---CCeE
Confidence 357999995 78999999987633 5544
No 235
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=45.50 E-value=35 Score=33.53 Aligned_cols=32 Identities=22% Similarity=0.248 Sum_probs=26.3
Q ss_pred CCcEEEEec--CCChHhHHHHHHHHHHhcCCcee
Q 015421 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 42 ~~~~I~VTG--TnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
+.++|+++| -.|||||..-|+..+...|.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~ 238 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVG 238 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 456888888 57899999999998888887763
No 236
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=45.33 E-value=26 Score=35.15 Aligned_cols=29 Identities=31% Similarity=0.537 Sum_probs=25.8
Q ss_pred cEEEEec----CCChHhHHHHHHHHHHhcCCce
Q 015421 44 KILAVTG----TNGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 44 ~~I~VTG----TnGKTTt~~~l~~iL~~~g~~~ 72 (407)
+-|.||| |-||+.|++-|..+|+..|+++
T Consensus 2 KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~V 34 (533)
T COG0504 2 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKV 34 (533)
T ss_pred eEEEEeCCeecccccHHHHHHHHHHHHHCCceE
Confidence 4577777 7799999999999999999987
No 237
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=44.96 E-value=22 Score=30.64 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=23.1
Q ss_pred CChHhHHHHHHHHHHhcCCcee-ecccCCccc
Q 015421 52 NGKSTVVTFVGQMLNHLGIEAF-VGGNLGNPL 82 (407)
Q Consensus 52 nGKTTt~~~l~~iL~~~g~~~~-~~g~~g~~~ 82 (407)
.||||.+.+|..-|+..|.++. +.+.-+.|+
T Consensus 7 sGKtT~~~~L~~~l~~~~~~~~~~~~~~~~~~ 38 (186)
T PF02223_consen 7 SGKTTQIRLLAEALKEKGYKVIITFPPGSTPI 38 (186)
T ss_dssp SSHHHHHHHHHHHHHHTTEEEEEEESSTSSHH
T ss_pred CCHHHHHHHHHHHHHHcCCcccccCCCCCChH
Confidence 5999999999999999998742 333334444
No 238
>PRK06761 hypothetical protein; Provisional
Probab=44.92 E-value=20 Score=33.68 Aligned_cols=29 Identities=34% Similarity=0.606 Sum_probs=24.2
Q ss_pred cEEEEec--CCChHhHHHHHHHHHHhcCCce
Q 015421 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 44 ~~I~VTG--TnGKTTt~~~l~~iL~~~g~~~ 72 (407)
++|.|+| -.||||++..+..-|...|..+
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v 34 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEV 34 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEE
Confidence 5788887 4689999999999998777655
No 239
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=44.47 E-value=22 Score=31.70 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=23.5
Q ss_pred CCCcEEEEecCC--ChHhHHHHHHHHHHh
Q 015421 41 RSIKILAVTGTN--GKSTVVTFVGQMLNH 67 (407)
Q Consensus 41 ~~~~~I~VTGTn--GKTTt~~~l~~iL~~ 67 (407)
++..+.|+-|-| ||||+-+||+.+|.-
T Consensus 26 e~Gei~GlLG~NGAGKTT~LRmiatlL~P 54 (245)
T COG4555 26 EEGEITGLLGENGAGKTTLLRMIATLLIP 54 (245)
T ss_pred ccceEEEEEcCCCCCchhHHHHHHHhccC
Confidence 467899999988 599999999999974
No 240
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=44.47 E-value=35 Score=32.69 Aligned_cols=30 Identities=27% Similarity=0.388 Sum_probs=24.9
Q ss_pred cEEEEe--cCCChHhHHHHHHHHHHhcCCcee
Q 015421 44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 44 ~~I~VT--GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
+++.++ |-.||||++..++--|.+.|.++.
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvL 34 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAVKLAESGKKVL 34 (322)
T ss_pred EEEEEecCCcccHHHHHHHHHHHHHHcCCcEE
Confidence 456666 678999999999999999997663
No 241
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=43.63 E-value=32 Score=31.44 Aligned_cols=29 Identities=28% Similarity=0.476 Sum_probs=25.1
Q ss_pred EEEEec----CCChHhHHHHHHHHHHhcCCcee
Q 015421 45 ILAVTG----TNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 45 ~I~VTG----TnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
-|.||| +-||+.|++-+..+|+.+|+++.
T Consensus 2 yi~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~ 34 (255)
T cd03113 2 YIFVTGGVVSSLGKGITAASLGRLLKARGLKVT 34 (255)
T ss_pred EEEEeCCcccCcchHHHHHHHHHHHHHCCCeEE
Confidence 466776 56999999999999999999873
No 242
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=43.14 E-value=37 Score=34.48 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=20.0
Q ss_pred CcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 43 IKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 43 ~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
..+|++.|.| |||||...|+..+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH
Confidence 4688888876 69999999998874
No 243
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=42.95 E-value=27 Score=28.70 Aligned_cols=49 Identities=16% Similarity=0.359 Sum_probs=34.5
Q ss_pred EEEecCCChHhHHHHHHHHHHhcCCceee-cccCCccchhhhhhcccCCCCCCCCcEEEEEecc
Q 015421 46 LAVTGTNGKSTVVTFVGQMLNHLGIEAFV-GGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSS 108 (407)
Q Consensus 46 I~VTGTnGKTTt~~~l~~iL~~~g~~~~~-~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~g~ 108 (407)
.+..|-.||||++..++..++..|.++.. ......+ .-++|+.|+.++.
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~--------------~~~yd~VIiD~p~ 54 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLA--------------NLDYDYIIIDTGA 54 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCC--------------CCCCCEEEEECCC
Confidence 34468899999999999999999987632 2222111 1126889999985
No 244
>COG5324 Uncharacterized conserved protein [Function unknown]
Probab=42.87 E-value=26 Score=35.12 Aligned_cols=29 Identities=31% Similarity=0.534 Sum_probs=20.5
Q ss_pred EEEecCCChHhHHHHHHHHHHhcCCceeecccC
Q 015421 46 LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL 78 (407)
Q Consensus 46 I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~ 78 (407)
|++-| +|||||+..|..++ |+.+.-..++
T Consensus 380 ia~ig-cgktt~ak~l~~lf---~w~~vqnd~l 408 (758)
T COG5324 380 IATIG-CGKTTVAKILEKLF---GWPVVQNDNL 408 (758)
T ss_pred EEEec-cCcccHHHHHHHHc---CCcccccCCC
Confidence 44445 79999999999998 6665433333
No 245
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=42.74 E-value=14 Score=31.51 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=17.9
Q ss_pred EEEecCCChHhHHHHHHHHHHhcC
Q 015421 46 LAVTGTNGKSTVVTFVGQMLNHLG 69 (407)
Q Consensus 46 I~VTGTnGKTTt~~~l~~iL~~~g 69 (407)
|++-| +||||++..|.++|.+.|
T Consensus 5 IAtiG-CGKTTva~aL~~LFg~wg 27 (168)
T PF08303_consen 5 IATIG-CGKTTVALALSNLFGEWG 27 (168)
T ss_pred ecCCC-cCHHHHHHHHHHHcCCCC
Confidence 33334 799999999999997644
No 246
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=42.30 E-value=41 Score=34.48 Aligned_cols=32 Identities=38% Similarity=0.508 Sum_probs=28.1
Q ss_pred CCcEEEEec------CCChHhHHHHHHHHHHhcCCcee
Q 015421 42 SIKILAVTG------TNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 42 ~~~~I~VTG------TnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
+.++|.||. .-|||||+.=|+..|.+.|.++.
T Consensus 54 ~~k~IlVTS~~PTp~GEGKTt~sinLA~~la~~Gkkvl 91 (557)
T PRK13505 54 DGKLILVTAINPTPAGEGKSTVTVGLGDALNKIGKKTV 91 (557)
T ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 468999998 34899999999999999998864
No 247
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=42.21 E-value=30 Score=29.57 Aligned_cols=30 Identities=27% Similarity=0.593 Sum_probs=22.1
Q ss_pred EEEEecC--CChHhHHHHHHHHHHhcCCceeeccc
Q 015421 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGGN 77 (407)
Q Consensus 45 ~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~~~g~ 77 (407)
+|.|+|- +||||++.+|+..| |+++...|.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~~vsaG~ 33 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLKLVSAGT 33 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCceeeccH
Confidence 4677764 68999999998776 666665554
No 248
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=41.91 E-value=33 Score=28.57 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=21.2
Q ss_pred EEEec--CCChHhHHHHHHHHHHhcCCce
Q 015421 46 LAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 46 I~VTG--TnGKTTt~~~l~~iL~~~g~~~ 72 (407)
|.|+| ..||||.+..|+..+...|..+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~ 30 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPV 30 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 45555 4699999999999998777654
No 249
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=41.65 E-value=36 Score=33.28 Aligned_cols=32 Identities=22% Similarity=0.178 Sum_probs=26.9
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHHHhcCCceee
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~~ 74 (407)
+..+|+|+|. .||||....|...|+.. +++.+
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~ 37 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLSER-FSVGY 37 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEE
Confidence 5679999994 68999999999999988 77754
No 250
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=41.34 E-value=24 Score=34.83 Aligned_cols=20 Identities=35% Similarity=0.463 Sum_probs=17.2
Q ss_pred cEEEEecC--CChHhHHHHHHH
Q 015421 44 KILAVTGT--NGKSTVVTFVGQ 63 (407)
Q Consensus 44 ~~I~VTGT--nGKTTt~~~l~~ 63 (407)
..|+|||. .||||++.+|+.
T Consensus 2 ~~IgltG~igsGKStv~~~L~~ 23 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE 23 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 56999994 799999999876
No 251
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=41.32 E-value=54 Score=31.02 Aligned_cols=51 Identities=18% Similarity=0.217 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecC--CChHhHHHHHHHHHHh
Q 015421 16 TGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGT--NGKSTVVTFVGQMLNH 67 (407)
Q Consensus 16 p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGT--nGKTTt~~~l~~iL~~ 67 (407)
+.+....+.|.---...+++.... +....|.|+|. .||||+...|...+..
T Consensus 106 ~tl~~l~~~g~~~~~~~~~L~~~v-~~~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 106 FTLDDYVEAGIMTAAQRDVLREAV-LARKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCHHHHHhcCCCCHHHHHHHHHHH-HcCCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 344444444432222345555555 34456778875 4899998877766654
No 252
>PRK01184 hypothetical protein; Provisional
Probab=41.30 E-value=36 Score=29.24 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=19.1
Q ss_pred cEEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 44 ~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
++|++||- .||||.+. ++++.|+.+.
T Consensus 2 ~~i~l~G~~GsGKsT~a~----~~~~~g~~~i 29 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK----IAREMGIPVV 29 (184)
T ss_pred cEEEEECCCCCCHHHHHH----HHHHcCCcEE
Confidence 57899986 57999765 4677787653
No 253
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=41.29 E-value=27 Score=32.55 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=19.1
Q ss_pred CCCcEEEEecCCChHhHH-HHHHHHHHhcCC
Q 015421 41 RSIKILAVTGTNGKSTVV-TFVGQMLNHLGI 70 (407)
Q Consensus 41 ~~~~~I~VTGTnGKTTt~-~~l~~iL~~~g~ 70 (407)
....+.|.+|| |||||. .-+..+|...+.
T Consensus 14 ~~~lV~a~AGS-GKT~~l~~ri~~ll~~~~~ 43 (315)
T PF00580_consen 14 GPLLVNAGAGS-GKTTTLLERIAYLLYEGGV 43 (315)
T ss_dssp SEEEEEE-TTS-SHHHHHHHHHHHHHHTSSS
T ss_pred CCEEEEeCCCC-CchHHHHHHHHHhhccccC
Confidence 35567888886 999976 445666666543
No 254
>PRK13695 putative NTPase; Provisional
Probab=40.71 E-value=40 Score=28.73 Aligned_cols=28 Identities=29% Similarity=0.533 Sum_probs=21.6
Q ss_pred EEEEecCC--ChHhHHHHHHHHHHhcCCce
Q 015421 45 ILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 45 ~I~VTGTn--GKTTt~~~l~~iL~~~g~~~ 72 (407)
.|++||.+ ||||....+..-++..|..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~ 31 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKV 31 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 36788765 79999999988888767653
No 255
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=40.60 E-value=39 Score=30.17 Aligned_cols=29 Identities=38% Similarity=0.585 Sum_probs=21.6
Q ss_pred cEEEEecCC--ChHhHHHHHH--HHHHhcCCce
Q 015421 44 KILAVTGTN--GKSTVVTFVG--QMLNHLGIEA 72 (407)
Q Consensus 44 ~~I~VTGTn--GKTTt~~~l~--~iL~~~g~~~ 72 (407)
+++.|||.| ||||....+. .++.+.|..+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v 62 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFV 62 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCee
Confidence 789999998 5777777777 5566667544
No 256
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=40.57 E-value=32 Score=28.76 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=22.5
Q ss_pred EEEec--CCChHhHHHHHHHHHHhcCCcee
Q 015421 46 LAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 46 I~VTG--TnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
|++.| -.||||++..+...+...|.++.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ 31 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVA 31 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence 45554 45899999999999999988763
No 257
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=40.29 E-value=30 Score=35.41 Aligned_cols=31 Identities=32% Similarity=0.241 Sum_probs=28.4
Q ss_pred CCcEEEEecCC------ChHhHHHHHHHHHHhcCCce
Q 015421 42 SIKILAVTGTN------GKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 42 ~~~~I~VTGTn------GKTTt~~~l~~iL~~~g~~~ 72 (407)
+.+.|.||+.+ |||||+--|.+.|...|.++
T Consensus 62 ~gklIlVTaitPTP~GEGKtTttIGL~~aL~~lgk~~ 98 (587)
T PRK13507 62 DGKYIDVTAITPTPLGEGKSTTTMGLVQGLGKRGKKV 98 (587)
T ss_pred CCeEEEEeccCCCCCCCCccchhhhHHHHHHhhcCce
Confidence 56899999986 99999999999999999886
No 258
>PRK06762 hypothetical protein; Provisional
Probab=40.28 E-value=32 Score=28.93 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=18.8
Q ss_pred cEEEEec--CCChHhHHHHHHHHH
Q 015421 44 KILAVTG--TNGKSTVVTFVGQML 65 (407)
Q Consensus 44 ~~I~VTG--TnGKTTt~~~l~~iL 65 (407)
++|.|+| -.||||.+..|+.-+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 5788998 468999999998877
No 259
>PRK00300 gmk guanylate kinase; Provisional
Probab=39.98 E-value=28 Score=30.50 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.1
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+|+|+|.+ ||||.+.+|...+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 56789999986 89999999988764
No 260
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=38.70 E-value=43 Score=29.51 Aligned_cols=29 Identities=31% Similarity=0.462 Sum_probs=22.0
Q ss_pred CcEEEEecCC--ChHhHHHHHHHHH--HhcCCc
Q 015421 43 IKILAVTGTN--GKSTVVTFVGQML--NHLGIE 71 (407)
Q Consensus 43 ~~~I~VTGTn--GKTTt~~~l~~iL--~~~g~~ 71 (407)
..+++|||-| ||||...++.... ...|..
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~ 57 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNVILAQAGAP 57 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCE
Confidence 3799999988 6999999997654 445543
No 261
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=38.62 E-value=26 Score=32.20 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.6
Q ss_pred cCCChHhHHHHHHHHHHhcCCcee
Q 015421 50 GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 50 GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
|-.||||++.-++..+.+.|.++.
T Consensus 9 gG~GKtt~a~~la~~~a~~g~~vL 32 (254)
T cd00550 9 GGVGKTTISAATAVRLAEQGKKVL 32 (254)
T ss_pred CCchHHHHHHHHHHHHHHCCCCce
Confidence 668999999999999999998874
No 262
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=38.55 E-value=35 Score=34.58 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=24.0
Q ss_pred CCcEEEEecCC---ChHhHHHHHHHHHHhc
Q 015421 42 SIKILAVTGTN---GKSTVVTFVGQMLNHL 68 (407)
Q Consensus 42 ~~~~I~VTGTn---GKTTt~~~l~~iL~~~ 68 (407)
+++.|.||||. |||+++..|...|++.
T Consensus 237 ~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~ 266 (476)
T PRK06278 237 KPKGIILLATGSESGKTFLTTSIAGKLRGK 266 (476)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 56789999985 9999999999999985
No 263
>PRK06217 hypothetical protein; Validated
Probab=38.35 E-value=32 Score=29.71 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=16.9
Q ss_pred EEEEecC--CChHhHHHHHHHHH
Q 015421 45 ILAVTGT--NGKSTVVTFVGQML 65 (407)
Q Consensus 45 ~I~VTGT--nGKTTt~~~l~~iL 65 (407)
.|.|+|. .||||.+..|+..|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 4667764 58999999999877
No 264
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=37.92 E-value=36 Score=28.91 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=22.9
Q ss_pred EEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 45 ~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
++.++|- .||||++..++..+.+.|.++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~ 32 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVL 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 4555553 5899999999999999887764
No 265
>PRK08338 2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Validated
Probab=37.80 E-value=2.6e+02 Score=23.83 Aligned_cols=143 Identities=15% Similarity=0.116 Sum_probs=80.1
Q ss_pred EEEecCCChH--hHHHHHHHHHHhcCCceeecccCCccchhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEE
Q 015421 46 LAVTGTNGKS--TVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVS 123 (407)
Q Consensus 46 I~VTGTnGKT--Tt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~ 123 (407)
|-|+|.-|-+ |+..+|+..+...|+.+.....+|... +..+-++-+=+|...+.... .-+||+.
T Consensus 3 i~i~G~gGqGv~tag~ila~aa~~~G~~v~~~~~ygs~~-------------RGG~~~~~vris~~~i~s~~-~~~~D~l 68 (170)
T PRK08338 3 IRFAGIGGQGVVLAGVILGEAAAIEGLNVLQTQDYSSAS-------------RGGHSIADVIISKEPIYDVM-VTKADVL 68 (170)
T ss_pred EEEEEECcHHHHHHHHHHHHHHHHcCCCEEEccccChhh-------------cCCeEEEEEEEcCccccCCC-CCCCCEE
Confidence 5566666665 566789999999999887666665422 33333344445544333221 2468888
Q ss_pred EEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeCCChhhHHHHhccccceEEeecCCCcccccccccceeEecc
Q 015421 124 VVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPA 203 (407)
Q Consensus 124 viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (407)
|.++= +.+.. ....+++++.+|+|.+... . ..+.+ + ++.
T Consensus 69 val~~-----------~~~~~----~~~~l~~~g~vi~n~~~~~-----~--~~~~~--~-----------------vp~ 107 (170)
T PRK08338 69 VALHQ-----------LGYET----AKSSLKEDGLLIIDTDLVK-----P--DRDYI--G-----------------APF 107 (170)
T ss_pred EEcCH-----------HHHHH----HhcccCCCeEEEEeCCCcC-----C--cceEE--E-----------------ecH
Confidence 76653 22222 3344568899998854210 0 00111 0 000
Q ss_pred CCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCC-CHHHHHHHhhcC
Q 015421 204 VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV-DVEALNSTIEIL 252 (407)
Q Consensus 204 ~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi-~~~~i~~~L~~~ 252 (407)
.. .-....|.....|..+.- +++..+|+ +.+.+.++++..
T Consensus 108 ~~-------ia~~~~g~~~~~N~v~lG--a~~~~~g~~~~e~~~~~i~~~ 148 (170)
T PRK08338 108 TR-------IAEETTGLALTVNMVALG--YLVAKTGVVKKESVEEAIRRR 148 (170)
T ss_pred HH-------HHHHhcCCHHHHHHHHHH--HHHHHhCCCCHHHHHHHHHHH
Confidence 00 011223555667876554 56677895 999999999864
No 266
>PRK13973 thymidylate kinase; Provisional
Probab=37.70 E-value=33 Score=30.51 Aligned_cols=30 Identities=23% Similarity=0.506 Sum_probs=25.3
Q ss_pred cEEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 44 ~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
+.|.|-|. .||||.+.+|+.-|...|+++.
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~ 35 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERLRAAGYDVL 35 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 56777765 5899999999999999998874
No 267
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=37.70 E-value=30 Score=30.84 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.6
Q ss_pred cCCChHhHHHHHHHHHHhcCCce
Q 015421 50 GTNGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 50 GTnGKTTt~~~l~~iL~~~g~~~ 72 (407)
|-.||||++..++..+.+.|+++
T Consensus 8 ~g~Gkt~~~~~la~~~a~~g~~~ 30 (217)
T cd02035 8 GGVGKTTIAAATAVRLAEEGKKV 30 (217)
T ss_pred CCchHHHHHHHHHHHHHHCCCcE
Confidence 55799999999999999998876
No 268
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=37.58 E-value=42 Score=35.83 Aligned_cols=29 Identities=17% Similarity=0.135 Sum_probs=24.0
Q ss_pred EEEEecC---CChHhHHHHHHHHHHhcCCcee
Q 015421 45 ILAVTGT---NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 45 ~I~VTGT---nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
.|-|+|| .|||+++.-|.+.|++.|.+++
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg 35 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVG 35 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 4555544 7899999999999999998874
No 269
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=37.35 E-value=32 Score=31.26 Aligned_cols=32 Identities=31% Similarity=0.431 Sum_probs=26.0
Q ss_pred EEEEe--cCCChHhHHHHHHHHHHhcCCceeecc
Q 015421 45 ILAVT--GTNGKSTVVTFVGQMLNHLGIEAFVGG 76 (407)
Q Consensus 45 ~I~VT--GTnGKTTt~~~l~~iL~~~g~~~~~~g 76 (407)
.|+|= |--|||||++=+++.|.+.|.++...|
T Consensus 3 ~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vG 36 (278)
T COG1348 3 QIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVG 36 (278)
T ss_pred eEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEc
Confidence 45554 667999999999999999999885544
No 270
>PRK05380 pyrG CTP synthetase; Validated
Probab=37.19 E-value=43 Score=34.35 Aligned_cols=31 Identities=29% Similarity=0.473 Sum_probs=27.3
Q ss_pred CcEEEEec----CCChHhHHHHHHHHHHhcCCcee
Q 015421 43 IKILAVTG----TNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 43 ~~~I~VTG----TnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
.|-|.||| +-||+.|++-|..+|+.+|+++.
T Consensus 2 ~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~ 36 (533)
T PRK05380 2 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVT 36 (533)
T ss_pred ceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceE
Confidence 46788888 67999999999999999999873
No 271
>PLN02759 Formate--tetrahydrofolate ligase
Probab=37.08 E-value=43 Score=34.68 Aligned_cols=31 Identities=29% Similarity=0.249 Sum_probs=27.9
Q ss_pred CCcEEEEecCC------ChHhHHHHHHHHHHh-cCCce
Q 015421 42 SIKILAVTGTN------GKSTVVTFVGQMLNH-LGIEA 72 (407)
Q Consensus 42 ~~~~I~VTGTn------GKTTt~~~l~~iL~~-~g~~~ 72 (407)
+.+.|.||+.+ |||||+--|.+.|.. .|.++
T Consensus 68 ~gklIlVTaitPTP~GEGKTTttIGL~~aL~~~lgk~~ 105 (637)
T PLN02759 68 DGYYVVVAGITPTPLGEGKSTTTIGLCQALGAYLDKKV 105 (637)
T ss_pred CCcEEEEEecCCCCCCCCchhHHHHHHHHHHHHhCCee
Confidence 56899999986 999999999999997 88876
No 272
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=36.79 E-value=1.3e+02 Score=25.03 Aligned_cols=45 Identities=16% Similarity=0.182 Sum_probs=22.8
Q ss_pred hHHHHHHHHhCCCCc-cc-cccccHHHHHHHHHHhcC--CCCEEEEcCC
Q 015421 334 GVLIWKTLVNNGLSI-PC-FAVANMKDAVNHARRMAT--NGDAIVLSPG 378 (407)
Q Consensus 334 ~~~~~~~l~~~~~~~-~~-~~~~~~~~a~~~a~~~~~--~gd~vL~~~G 378 (407)
...+...++..|... .. ...+|.++..+.+.+..+ ..|+|+..+|
T Consensus 22 ~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG 70 (152)
T cd00886 22 GPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGG 70 (152)
T ss_pred HHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 344556666665432 11 233445444444443444 5688887644
No 273
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=36.72 E-value=91 Score=28.46 Aligned_cols=56 Identities=9% Similarity=0.005 Sum_probs=41.6
Q ss_pred HHHHHcCCCHHHHHHHhhcCCCC-------CCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhcc
Q 015421 233 VLGLDIGVDVEALNSTIEILRTP-------PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL 290 (407)
Q Consensus 233 a~~~~lgi~~~~i~~~L~~~~~~-------~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~ 290 (407)
.-|...++|.+.|.++|+.-.+- +-++|-+ ..+|+.||.++.-.|+.-+..-++.+
T Consensus 54 ~~Ak~~~~Pkd~IerAIkr~~g~~~~~~~~~~~YEg~--gP~GvaiiVe~lTDN~nRt~~~ir~~ 116 (238)
T TIGR01033 54 EKAKAANMPKDNIERAIKKGAGELDGSNYEEITYEGY--APGGVAIIVECLTDNKNRTASEVRSA 116 (238)
T ss_pred HHHHHhCCCHHHHHHHHHHhcCCCCccceEEEEEEEE--cCCceEEEEEEecCCHHhHHHHHHHH
Confidence 77788999999999999988753 2244444 36788888888777877776666554
No 274
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=36.68 E-value=61 Score=26.62 Aligned_cols=31 Identities=26% Similarity=0.236 Sum_probs=22.9
Q ss_pred HHhhCCCCCcEEEEecC--CChHhHHHHHHHHHH
Q 015421 35 AAQVIPRSIKILAVTGT--NGKSTVVTFVGQMLN 66 (407)
Q Consensus 35 ~~~~~~~~~~~I~VTGT--nGKTTt~~~l~~iL~ 66 (407)
+++.+ +...+|.+.|. .||||.+..+...|.
T Consensus 15 l~~~l-~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 15 FAKPL-DFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHhC-CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34444 45679999997 579999888887774
No 275
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=36.33 E-value=39 Score=39.89 Aligned_cols=54 Identities=30% Similarity=0.495 Sum_probs=0.0
Q ss_pred eeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhc-----------------CCceeecccCCccchh
Q 015421 29 MSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHL-----------------GIEAFVGGNLGNPLSE 84 (407)
Q Consensus 29 l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~-----------------g~~~~~~g~~g~~~~~ 84 (407)
+..+.+-.+.- ...-.||=||| ||||+..+|+-.|... |++...+.++|.|+..
T Consensus 454 leql~~~Iq~n-ep~LLVGeTGt-GKTT~IQ~La~~l~~kltvin~sqqte~sd~lgGykpIn~~tl~lpl~e 524 (4600)
T COG5271 454 LEQLLWNIQNN-EPTLLVGETGT-GKTTMIQYLALKLHFKLTVINKSQQTEMSDDLGGYKPINGSTLGLPLHE 524 (4600)
T ss_pred HHHHHHHhccC-CceEEEecCCC-chhhHHHHHHHHhhhhheehhhhhhccchhhcCCcccCCCcccccchHH
No 276
>PRK08534 pyruvate ferredoxin oxidoreductase subunit gamma; Reviewed
Probab=35.95 E-value=2.8e+02 Score=23.80 Aligned_cols=94 Identities=11% Similarity=0.115 Sum_probs=53.7
Q ss_pred EEEEecCCChH--hHHHHHHHHHHhcCCceeecccCCccchhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceE
Q 015421 45 ILAVTGTNGKS--TVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTV 122 (407)
Q Consensus 45 ~I~VTGTnGKT--Tt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i 122 (407)
.|-++|.-|-+ |+..+|+.++...|+.+.....++.-. +..+-++-+=+|...+.......+||+
T Consensus 3 ~i~i~G~gGqGv~tag~ila~a~~~~G~~V~~~~~ygs~~-------------RGG~~~~~vris~~~i~~~~~~~~~D~ 69 (181)
T PRK08534 3 EIRFHGRGGQGAVTAAEILAKAAFEDGKFSQAFPFFGVER-------------RGAPVMAFTRIDDKPIRLRSQIYEPDY 69 (181)
T ss_pred EEEEEEECcchHHHHHHHHHHHHHhcCCeEEEEeccChhh-------------cCCcEEEEEEEcCCcccCcccCCCCCE
Confidence 45666666665 455688888888999887666655422 223323334445444432222346788
Q ss_pred EEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeCC
Q 015421 123 SVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164 (407)
Q Consensus 123 ~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~d 164 (407)
.+..+-.. ++ ...+...+++++.+|+|.+
T Consensus 70 lva~~~~~--------~~-----~~~~~~~l~~gg~vi~ns~ 98 (181)
T PRK08534 70 VIVQDPTL--------LD-----SVDVTSGLKKDGIIIINTT 98 (181)
T ss_pred EEEcCHHH--------hc-----chhHhcCcCCCcEEEEECC
Confidence 87776411 11 1122344568899999964
No 277
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=35.78 E-value=54 Score=28.78 Aligned_cols=30 Identities=20% Similarity=0.439 Sum_probs=22.2
Q ss_pred cEEEEecCC--ChHhHHHHHHHHHHhcCCcee
Q 015421 44 KILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 44 ~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~~ 73 (407)
++..|+|-- ||||+...+...+...|.++.
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~ 50 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVI 50 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 456666554 599999999999999998763
No 278
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=35.69 E-value=36 Score=27.43 Aligned_cols=26 Identities=35% Similarity=0.525 Sum_probs=20.2
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHHh
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~~ 67 (407)
...+++|+|.| ||||...+|...+..
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred CCCEEEEEccCCCccccceeeecccccc
Confidence 45689999998 799988877666553
No 279
>PRK05541 adenylylsulfate kinase; Provisional
Probab=35.64 E-value=61 Score=27.57 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=24.2
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~ 72 (407)
+..+|.++|- .||||.+..|+.-|...+..+
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~ 38 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNV 38 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 4568888886 579999999999998765443
No 280
>PRK00131 aroK shikimate kinase; Reviewed
Probab=35.53 E-value=43 Score=28.13 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=19.6
Q ss_pred CCcEEEEec--CCChHhHHHHHHHHH
Q 015421 42 SIKILAVTG--TNGKSTVVTFVGQML 65 (407)
Q Consensus 42 ~~~~I~VTG--TnGKTTt~~~l~~iL 65 (407)
+.+.|.++| ..||||++..|+..|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 345778877 569999999999988
No 281
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=35.32 E-value=37 Score=28.97 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=19.0
Q ss_pred cEEEEecCC--ChHhHHHHHHHHHHh
Q 015421 44 KILAVTGTN--GKSTVVTFVGQMLNH 67 (407)
Q Consensus 44 ~~I~VTGTn--GKTTt~~~l~~iL~~ 67 (407)
++|.|+|.+ ||||+...|...+..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 467888865 799999999888754
No 282
>PRK14528 adenylate kinase; Provisional
Probab=34.99 E-value=51 Score=28.62 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=19.8
Q ss_pred cEEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 44 ~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
+.|.|+|. .||||.+..|+.-+ |+.+.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~---~~~~i 30 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL---SIPQI 30 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---CCCee
Confidence 45777877 58999999998766 45443
No 283
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=34.91 E-value=39 Score=29.73 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=23.7
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHHhcC
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLG 69 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~~~g 69 (407)
....+.|+|-| ||||.-++|+-+++...
T Consensus 27 ~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~ 56 (209)
T COG4133 27 AGEALQITGPNGAGKTTLLRILAGLLRPDA 56 (209)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcccCCCC
Confidence 45688999998 59999999999998654
No 284
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=34.49 E-value=55 Score=28.73 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=15.5
Q ss_pred EEEEecCC--ChHhHHHHHHHHHH
Q 015421 45 ILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 45 ~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+|.|+|.. ||||+...+...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 57788775 59999886555444
No 285
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=34.34 E-value=63 Score=28.31 Aligned_cols=27 Identities=30% Similarity=0.731 Sum_probs=20.2
Q ss_pred cEEEEecCC--ChHhHHHHHH--HHHHhcCC
Q 015421 44 KILAVTGTN--GKSTVVTFVG--QMLNHLGI 70 (407)
Q Consensus 44 ~~I~VTGTn--GKTTt~~~l~--~iL~~~g~ 70 (407)
+++++||-| ||||...++. .++.+.|.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~ 59 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLGLLTLMAQSGL 59 (200)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHHcCC
Confidence 689999988 6999988877 23445554
No 286
>PRK13947 shikimate kinase; Provisional
Probab=34.06 E-value=45 Score=28.16 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=17.4
Q ss_pred EEEEec--CCChHhHHHHHHHHHH
Q 015421 45 ILAVTG--TNGKSTVVTFVGQMLN 66 (407)
Q Consensus 45 ~I~VTG--TnGKTTt~~~l~~iL~ 66 (407)
.|.++| -.||||++..|+..|.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 366666 4699999999998883
No 287
>PRK07261 topology modulation protein; Provisional
Probab=33.50 E-value=44 Score=28.56 Aligned_cols=20 Identities=35% Similarity=0.497 Sum_probs=14.6
Q ss_pred EEEecCC--ChHhHHHHHHHHH
Q 015421 46 LAVTGTN--GKSTVVTFVGQML 65 (407)
Q Consensus 46 I~VTGTn--GKTTt~~~l~~iL 65 (407)
|.|.|.. ||||.+..|+..+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 5666554 8999999886554
No 288
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=33.49 E-value=55 Score=31.61 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=21.2
Q ss_pred HHhhCCCCCcEEEEecCCC--hHhHHHHHHHHHH
Q 015421 35 AAQVIPRSIKILAVTGTNG--KSTVVTFVGQMLN 66 (407)
Q Consensus 35 ~~~~~~~~~~~I~VTGTnG--KTTt~~~l~~iL~ 66 (407)
+.+++.+....|.|+|..| ||||...+..-+.
T Consensus 114 l~~~~~~~~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 114 LRELAERPRGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred HHHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 3333323456899999876 9999987655443
No 289
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=33.27 E-value=2e+02 Score=26.77 Aligned_cols=60 Identities=20% Similarity=0.327 Sum_probs=28.6
Q ss_pred hHhhhhhccCccEEEEeCCCh-----HHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEc
Q 015421 314 FEKLIEPLNHHRCVITFGYSG-----VLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLS 376 (407)
Q Consensus 314 ~~~~~~~l~~~~~v~~~g~~~-----~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~ 376 (407)
+++.++.+.+++.|+++|-.. .++...+...| ..+....|..... .....++++|++++.
T Consensus 120 l~~av~~L~~A~rI~~~G~g~S~~vA~~~~~~l~~ig--~~~~~~~d~~~~~-~~~~~~~~~Dv~i~i 184 (281)
T COG1737 120 LERAVELLAKARRIYFFGLGSSGLVASDLAYKLMRIG--LNVVALSDTHGQL-MQLALLTPGDVVIAI 184 (281)
T ss_pred HHHHHHHHHcCCeEEEEEechhHHHHHHHHHHHHHcC--CceeEecchHHHH-HHHHhCCCCCEEEEE
Confidence 444555555555555554221 23333443333 2444444544444 234445667766553
No 290
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=33.22 E-value=45 Score=28.25 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=20.7
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+++|+|.| ||||...+|.-++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56799999997 89999998887664
No 291
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=33.11 E-value=65 Score=32.22 Aligned_cols=30 Identities=17% Similarity=0.141 Sum_probs=21.9
Q ss_pred CcEEEEecC--CChHhHHHHHHHHHH--hcCCce
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQMLN--HLGIEA 72 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL~--~~g~~~ 72 (407)
..+|++.|. .|||||+..|+..+. ..|.++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V 254 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKV 254 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeE
Confidence 347777775 479999999998886 345544
No 292
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.10 E-value=30 Score=33.85 Aligned_cols=31 Identities=19% Similarity=0.288 Sum_probs=25.1
Q ss_pred CcEEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
..+|-+.|- .||||||.=+++.++..|+++.
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~ 133 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVA 133 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCcee
Confidence 346666654 3799999999999999999974
No 293
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=32.93 E-value=42 Score=29.84 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=25.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhccCCCcEEEEECCCCC
Q 015421 267 QGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304 (407)
Q Consensus 267 ~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~ 304 (407)
+.++|||++-|.+|+.++..+..+..+.+++++|+...
T Consensus 120 ~~~iIvDEaQN~t~~~~k~ilTR~g~~skii~~GD~~Q 157 (205)
T PF02562_consen 120 NAFIIVDEAQNLTPEELKMILTRIGEGSKIIITGDPSQ 157 (205)
T ss_dssp SEEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE----
T ss_pred ceEEEEecccCCCHHHHHHHHcccCCCcEEEEecCcee
Confidence 45788888888899999999999887888999997743
No 294
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=32.23 E-value=69 Score=22.47 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=20.7
Q ss_pred cEEEEecCC--ChHhHHHHHHHHHHhcC
Q 015421 44 KILAVTGTN--GKSTVVTFVGQMLNHLG 69 (407)
Q Consensus 44 ~~I~VTGTn--GKTTt~~~l~~iL~~~g 69 (407)
++..|+|-| ||||.-..+..+|-...
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 478888876 69999999998886543
No 295
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=32.17 E-value=48 Score=30.94 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=19.9
Q ss_pred EEEEecCCChHhHHHHHHHHHHhcCCc
Q 015421 45 ILAVTGTNGKSTVVTFVGQMLNHLGIE 71 (407)
Q Consensus 45 ~I~VTGTnGKTTt~~~l~~iL~~~g~~ 71 (407)
++|.+|| ||||-+.-|.+-|.+.+.+
T Consensus 24 VvGMAGS-GKTTF~QrL~~hl~~~~~p 49 (366)
T KOG1532|consen 24 VVGMAGS-GKTTFMQRLNSHLHAKKTP 49 (366)
T ss_pred EEecCCC-CchhHHHHHHHHHhhccCC
Confidence 5555564 9999999999888887654
No 296
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=32.06 E-value=22 Score=36.19 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=20.3
Q ss_pred CCCcEEEEec--CCChHhHHHHHHHH
Q 015421 41 RSIKILAVTG--TNGKSTVVTFVGQM 64 (407)
Q Consensus 41 ~~~~~I~VTG--TnGKTTt~~~l~~i 64 (407)
.++|.+.|.| |.||||+.+|+++.
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqA 331 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQA 331 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHh
Confidence 4678888887 89999999999874
No 297
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=31.88 E-value=52 Score=28.24 Aligned_cols=27 Identities=30% Similarity=0.349 Sum_probs=21.4
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHHhc
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~~~ 68 (407)
+..+..|+|-| ||||+...|..+|...
T Consensus 18 ~~g~~vi~G~Ng~GKStil~ai~~~L~~~ 46 (202)
T PF13476_consen 18 SPGLNVIYGPNGSGKSTILEAIRYALGGQ 46 (202)
T ss_dssp -SEEEEEEESTTSSHHHHHHHHHHHHHSS
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 34678888876 7999999999999653
No 298
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=31.74 E-value=57 Score=33.41 Aligned_cols=29 Identities=31% Similarity=0.552 Sum_probs=25.9
Q ss_pred cEEEEec----CCChHhHHHHHHHHHHhcCCce
Q 015421 44 KILAVTG----TNGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 44 ~~I~VTG----TnGKTTt~~~l~~iL~~~g~~~ 72 (407)
|-|.||| +-||+.|++-|..+|+.+|+++
T Consensus 2 k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v 34 (525)
T TIGR00337 2 KYIFVTGGVVSSLGKGITAASIGRLLKARGLKV 34 (525)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHhCCCce
Confidence 5678887 5699999999999999999987
No 299
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=31.72 E-value=55 Score=28.32 Aligned_cols=28 Identities=36% Similarity=0.609 Sum_probs=18.6
Q ss_pred EEEEecCC--ChHhHHHHHH--HHHHhcCCce
Q 015421 45 ILAVTGTN--GKSTVVTFVG--QMLNHLGIEA 72 (407)
Q Consensus 45 ~I~VTGTn--GKTTt~~~l~--~iL~~~g~~~ 72 (407)
++.|||.| ||||....+. .+|.+.|..+
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v 32 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFV 32 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCe
Confidence 46799988 6777777665 3445666544
No 300
>PF12846 AAA_10: AAA-like domain
Probab=31.35 E-value=47 Score=30.70 Aligned_cols=28 Identities=32% Similarity=0.381 Sum_probs=18.8
Q ss_pred cEEEEecCCChHhHHHHHHHHHHhcCCce
Q 015421 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 44 ~~I~VTGTnGKTTt~~~l~~iL~~~g~~~ 72 (407)
-++|-||| |||++...+..-+...|..+
T Consensus 5 ~i~G~tGs-GKT~~~~~l~~~~~~~g~~~ 32 (304)
T PF12846_consen 5 LILGKTGS-GKTTLLKNLLEQLIRRGPRV 32 (304)
T ss_pred EEECCCCC-cHHHHHHHHHHHHHHcCCCE
Confidence 34555554 89988887776666666554
No 301
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=31.27 E-value=1.4e+02 Score=24.71 Aligned_cols=49 Identities=16% Similarity=0.258 Sum_probs=27.2
Q ss_pred CCChHHHHHHHHhCCCCcc-cccc-ccHHHHHHHHHHhcCCCCEEEEcCCC
Q 015421 331 GYSGVLIWKTLVNNGLSIP-CFAV-ANMKDAVNHARRMATNGDAIVLSPGC 379 (407)
Q Consensus 331 g~~~~~~~~~l~~~~~~~~-~~~~-~~~~~a~~~a~~~~~~gd~vL~~~G~ 379 (407)
..+...+.+.+++.|.... ...+ +|.++..+.+.+.....|+|++++|.
T Consensus 26 d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~ 76 (144)
T TIGR00177 26 DSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGT 76 (144)
T ss_pred eCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCC
Confidence 4455667777777765321 2233 44444444444444567998887553
No 302
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=31.25 E-value=42 Score=33.44 Aligned_cols=31 Identities=35% Similarity=0.400 Sum_probs=27.9
Q ss_pred CCcEEEEecCC------ChHhHHHHHHHHHHhcCCce
Q 015421 42 SIKILAVTGTN------GKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 42 ~~~~I~VTGTn------GKTTt~~~l~~iL~~~g~~~ 72 (407)
+.+.|.||+-| |||||+-=|.+.|...|+++
T Consensus 51 ~gKlILVTaitPTPaGEGKsTttiGL~~al~~lgK~~ 87 (554)
T COG2759 51 DGKLILVTAITPTPAGEGKTTTTIGLVDALNKLGKKA 87 (554)
T ss_pred CceEEEEEecCCCCCCCCcceeeehHHHHHHhcCchh
Confidence 57899999865 99999999999999999875
No 303
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=31.10 E-value=1.7e+02 Score=25.10 Aligned_cols=78 Identities=12% Similarity=0.072 Sum_probs=38.3
Q ss_pred EEEEECCCCCCCCCCCCcchHhhhhhccCccEEEEeCCCh-HHHHHHHHhC--CCCccccccccHHHHHHHHHHhcCCCC
Q 015421 295 CVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSG-VLIWKTLVNN--GLSIPCFAVANMKDAVNHARRMATNGD 371 (407)
Q Consensus 295 ~i~V~g~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~g~~~-~~~~~~l~~~--~~~~~~~~~~~~~~a~~~a~~~~~~gd 371 (407)
.++|.|+.. .|+++ +.+.++......-.++.+|... .++.+.++.. .-+..+...+...+....+.....+||
T Consensus 2 ~ilvtGgaR-SGKS~---~AE~la~~~~~~v~YvAT~~a~D~Em~~RI~~Hr~rRp~~W~tvE~~~~l~~~L~~~~~~~~ 77 (175)
T COG2087 2 MILVTGGAR-SGKSS---FAEALAGESGGQVLYVATGRAFDDEMQERIAHHRARRPEHWRTVEAPLDLATLLEALIEPGD 77 (175)
T ss_pred eEEEecCcc-CCchH---HHHHHHHhhCCceEEEEecCCCCHHHHHHHHHHHhcCCCcceEEeccccHHHHHHhcccCCC
Confidence 578888553 24332 2333443322122333445443 4555555332 112234444445555555555566789
Q ss_pred EEEEc
Q 015421 372 AIVLS 376 (407)
Q Consensus 372 ~vL~~ 376 (407)
+||+-
T Consensus 78 ~VLvD 82 (175)
T COG2087 78 VVLVD 82 (175)
T ss_pred EEEEE
Confidence 99973
No 304
>PLN02318 phosphoribulokinase/uridine kinase
Probab=31.01 E-value=52 Score=34.37 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=21.4
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
...+|+|+|-+ ||||.+..|...+.
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglLp 90 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFMP 90 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhCC
Confidence 45799999975 79999999999874
No 305
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=30.91 E-value=45 Score=27.07 Aligned_cols=21 Identities=43% Similarity=0.717 Sum_probs=16.3
Q ss_pred EEEEecCC--ChHhHHHHHHHHH
Q 015421 45 ILAVTGTN--GKSTVVTFVGQML 65 (407)
Q Consensus 45 ~I~VTGTn--GKTTt~~~l~~iL 65 (407)
+|.|+|.+ ||||.+..|+.-|
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 46777765 7999999888765
No 306
>PLN02327 CTP synthase
Probab=30.75 E-value=60 Score=33.44 Aligned_cols=30 Identities=30% Similarity=0.464 Sum_probs=26.3
Q ss_pred cEEEEec----CCChHhHHHHHHHHHHhcCCcee
Q 015421 44 KILAVTG----TNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 44 ~~I~VTG----TnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
+-|.||| +-||+.|++-|..+|+.+|+++.
T Consensus 2 k~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~ 35 (557)
T PLN02327 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVT 35 (557)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHHCCCcee
Confidence 5678887 56999999999999999999873
No 307
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=30.64 E-value=49 Score=32.76 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=18.9
Q ss_pred CCcEEEEec--CCChHhHHHHHHHHH
Q 015421 42 SIKILAVTG--TNGKSTVVTFVGQML 65 (407)
Q Consensus 42 ~~~~I~VTG--TnGKTTt~~~l~~iL 65 (407)
-.+.|+|+| +.||||.+..|+..+
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 467889987 579999998887644
No 308
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=30.17 E-value=62 Score=33.19 Aligned_cols=24 Identities=42% Similarity=0.548 Sum_probs=20.8
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHH
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL 65 (407)
...+|+|.|. .||||.+..|+.-|
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l 308 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKL 308 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999997 47999999999888
No 309
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=30.16 E-value=72 Score=30.31 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=20.6
Q ss_pred CCCcEEEEec--CCChHhHHHHHHHHH
Q 015421 41 RSIKILAVTG--TNGKSTVVTFVGQML 65 (407)
Q Consensus 41 ~~~~~I~VTG--TnGKTTt~~~l~~iL 65 (407)
.+...|.++| -.||||+..+|+..|
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 3566899998 568999999998877
No 310
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=30.10 E-value=85 Score=29.06 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=14.2
Q ss_pred CCcEEEEecCC--ChHhHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFV 61 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l 61 (407)
..-.|.|+|.. |||||...+
T Consensus 79 ~~GlilisG~tGSGKTT~l~al 100 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTLYSA 100 (264)
T ss_pred CCCEEEEECCCCCcHHHHHHHH
Confidence 44578888865 788887644
No 311
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=30.06 E-value=37 Score=28.44 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=14.8
Q ss_pred EEecC--CChHhHHHHHHHHH
Q 015421 47 AVTGT--NGKSTVVTFVGQML 65 (407)
Q Consensus 47 ~VTGT--nGKTTt~~~l~~iL 65 (407)
.++|- .||||++..|+..|
T Consensus 2 ~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 2 VLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred EEECCCCCCHHHHHHHHHHhc
Confidence 34554 39999999999887
No 312
>PRK04296 thymidine kinase; Provisional
Probab=29.88 E-value=78 Score=27.55 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=18.9
Q ss_pred cEEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 44 ~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
.++.|||. .||||....+..-+..+|.++.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~ 34 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVL 34 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEE
Confidence 46789998 5555555555554555677764
No 313
>COG3910 Predicted ATPase [General function prediction only]
Probab=29.72 E-value=47 Score=29.26 Aligned_cols=50 Identities=20% Similarity=0.158 Sum_probs=31.7
Q ss_pred cCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCC--hHhHHHHHHHHH
Q 015421 13 LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG--KSTVVTFVGQML 65 (407)
Q Consensus 13 ~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnG--KTTt~~~l~~iL 65 (407)
+++|+-...-.-.+|+++.++. ++- .+.|+-.|||-|| |+|..+.|+...
T Consensus 10 ~ekve~~~eYp~slPa~r~l~~--~Le-F~apIT~i~GENGsGKSTLLEaiA~~~ 61 (233)
T COG3910 10 LEKVESFEEYPFSLPAFRHLEE--RLE-FRAPITFITGENGSGKSTLLEAIAAGM 61 (233)
T ss_pred hhcccchhhCcccchHHHhhhh--hcc-ccCceEEEEcCCCccHHHHHHHHHhhc
Confidence 4555555555566677766665 222 4678888999885 877766665443
No 314
>PRK06851 hypothetical protein; Provisional
Probab=29.72 E-value=1.1e+02 Score=29.96 Aligned_cols=31 Identities=26% Similarity=0.476 Sum_probs=26.9
Q ss_pred CCcEEEEec--CCChHhHHHHHHHHHHhcCCce
Q 015421 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 42 ~~~~I~VTG--TnGKTTt~~~l~~iL~~~g~~~ 72 (407)
..+++.++| ..||||+..-+...+.+.|+.+
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~V 61 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDV 61 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 356899999 6789999999999999888876
No 315
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.53 E-value=57 Score=27.94 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=21.1
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+++|.|-| ||||...+|..++.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56799999997 89999988887665
No 316
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=29.13 E-value=34 Score=29.60 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=18.3
Q ss_pred cEEEEec--CCChHhHHHHHHHHHHh
Q 015421 44 KILAVTG--TNGKSTVVTFVGQMLNH 67 (407)
Q Consensus 44 ~~I~VTG--TnGKTTt~~~l~~iL~~ 67 (407)
++|.+.| |.||||++..|...|..
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~ 27 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPE 27 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcC
Confidence 3566665 78999999999998754
No 317
>PRK10536 hypothetical protein; Provisional
Probab=29.10 E-value=2.1e+02 Score=26.54 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=39.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhccCCCcEEEEECCCCCCCCC-CCCcchHhhhhhcc
Q 015421 267 QGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNG-QESNGFEKLIEPLN 322 (407)
Q Consensus 267 ~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~-~~~~~~~~~~~~l~ 322 (407)
+.++|||++-+.+|.-++..+..+..+.++++.|+...-+.. ...+.+....+.+.
T Consensus 177 ~~~vIvDEaqn~~~~~~k~~ltR~g~~sk~v~~GD~~QiD~p~~~~sGL~~~~~~~k 233 (262)
T PRK10536 177 NAVVILDEAQNVTAAQMKMFLTRLGENVTVIVNGDITQCDLPRGVKSGLSDALERFE 233 (262)
T ss_pred CCEEEEechhcCCHHHHHHHHhhcCCCCEEEEeCChhhccCCCCCCCCHHHHHHHhC
Confidence 568899988888999999999999888888999977533321 11234555555554
No 318
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=29.02 E-value=54 Score=33.87 Aligned_cols=31 Identities=39% Similarity=0.424 Sum_probs=27.7
Q ss_pred CCcEEEEecCC------ChHhHHHHHHHHHH-hcCCce
Q 015421 42 SIKILAVTGTN------GKSTVVTFVGQMLN-HLGIEA 72 (407)
Q Consensus 42 ~~~~I~VTGTn------GKTTt~~~l~~iL~-~~g~~~ 72 (407)
+.+.|.||+.+ |||||+--|.+.|. ..|.++
T Consensus 67 ~gklIlVTaitPTP~GEGKtTttIGL~~aL~~~lgk~~ 104 (625)
T PTZ00386 67 NGKYVVVAGMNPTPLGEGKSTTTIGLAQSLGAHLHRKT 104 (625)
T ss_pred CCcEEEEeecCCCCCCCCccchhhhhHHHHHHHhCcce
Confidence 56899999986 99999999999999 688876
No 319
>PRK13975 thymidylate kinase; Provisional
Probab=28.97 E-value=56 Score=28.30 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=20.0
Q ss_pred cEEEEecC--CChHhHHHHHHHHHHh
Q 015421 44 KILAVTGT--NGKSTVVTFVGQMLNH 67 (407)
Q Consensus 44 ~~I~VTGT--nGKTTt~~~l~~iL~~ 67 (407)
..|.|.|. .||||.+..|+.-|..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46888886 5899999999999864
No 320
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=28.84 E-value=2.7e+02 Score=21.91 Aligned_cols=9 Identities=11% Similarity=0.379 Sum_probs=4.3
Q ss_pred CcEEEEECC
Q 015421 293 HKCVILLGG 301 (407)
Q Consensus 293 ~~~i~V~g~ 301 (407)
.+++.++|.
T Consensus 13 ~~~i~i~g~ 21 (139)
T cd05013 13 ARRIYIFGV 21 (139)
T ss_pred CCEEEEEEc
Confidence 344555553
No 321
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=28.81 E-value=2.7e+02 Score=27.59 Aligned_cols=26 Identities=15% Similarity=0.417 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCCc
Q 015421 356 MKDAVNHARRMATNGDAIVLSPGCASF 382 (407)
Q Consensus 356 ~~~a~~~a~~~~~~gd~vL~~~G~~s~ 382 (407)
.++.++.++..+.+||+|+ -+|..+|
T Consensus 81 VD~~I~~L~p~Le~gDIiI-DGGNs~y 106 (473)
T COG0362 81 VDAVIEQLLPLLEKGDIII-DGGNSHY 106 (473)
T ss_pred HHHHHHHHHhhcCCCCEEE-eCCCcCC
Confidence 4566777777888888774 4566554
No 322
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=28.59 E-value=54 Score=32.96 Aligned_cols=27 Identities=37% Similarity=0.626 Sum_probs=21.9
Q ss_pred CCCCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 40 PRSIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 40 ~~~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
++..+++||-|+| ||||+...|+--|.
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~ 125 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELK 125 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccc
Confidence 4677899999999 59998888876554
No 323
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=28.32 E-value=58 Score=28.81 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=21.0
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+++|.|-| ||||...+|+-++.
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 56799999997 89999999887664
No 324
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=28.25 E-value=39 Score=31.92 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=18.7
Q ss_pred ecCCChHhHHHHHHHHHHhcC
Q 015421 49 TGTNGKSTVVTFVGQMLNHLG 69 (407)
Q Consensus 49 TGTnGKTTt~~~l~~iL~~~g 69 (407)
.|.|||||...+|..++....
T Consensus 84 ~g~nGKStl~~~l~~l~G~~~ 104 (304)
T TIGR01613 84 NGGNGKSTFQNLLSNLLGDYA 104 (304)
T ss_pred CCCCcHHHHHHHHHHHhChhh
Confidence 599999999999999997754
No 325
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=27.84 E-value=2.2e+02 Score=20.00 Aligned_cols=45 Identities=11% Similarity=0.193 Sum_probs=28.7
Q ss_pred CCCHHHHHHHhhcC--CCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhc
Q 015421 239 GVDVEALNSTIEIL--RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMD 289 (407)
Q Consensus 239 gi~~~~i~~~L~~~--~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~ 289 (407)
.++.++|.+-+..+ ...|.|.|++. ...+.|+- .+++...+||..
T Consensus 15 ~lsT~dI~~y~~~y~~~~~~~~IEWId--DtScNvvf----~d~~~A~~AL~~ 61 (62)
T PF10309_consen 15 ELSTDDIKAYFSEYFDEEGPFRIEWID--DTSCNVVF----KDEETAARALVA 61 (62)
T ss_pred CCCHHHHHHHHHHhcccCCCceEEEec--CCcEEEEE----CCHHHHHHHHHc
Confidence 35678888888888 33578888884 34455554 245555555543
No 326
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=27.81 E-value=59 Score=28.50 Aligned_cols=25 Identities=32% Similarity=0.618 Sum_probs=20.4
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
...+++|+|.| ||||...+|+-++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56799999997 89999998876553
No 327
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=27.67 E-value=1.5e+02 Score=29.48 Aligned_cols=114 Identities=14% Similarity=0.106 Sum_probs=65.9
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHHhcCCceeecccCCccchhhhhhcccCCCCCCCCcEEEEEecccccccCCcccc
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFC 119 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~ 119 (407)
+.-+|.|.|-- ||||+.--+++-|.+.+...+.+|-=..--...+.+++.. ..+.-+..-|.....+...-...+
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~---~~~~l~l~aEt~~e~I~~~l~~~~ 168 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGL---PTNNLYLLAETNLEDIIAELEQEK 168 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCC---CccceEEehhcCHHHHHHHHHhcC
Confidence 34588999874 7999988888888888833355553111101111111111 112234566766433322222368
Q ss_pred ceEEEEecCChhhhcc----CCCHHHHHHHHHHhhcccCCCce
Q 015421 120 PTVSVVLNLTPDHLER----HKTMKNYALTKCHLFSHMVNTKL 158 (407)
Q Consensus 120 p~i~viTni~~dHl~~----~~t~e~i~~~K~~i~~~~~~~~~ 158 (407)
|++.||=+|..=|.+. -||..++.+.-.++++..+..+.
T Consensus 169 p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i 211 (456)
T COG1066 169 PDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNI 211 (456)
T ss_pred CCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCC
Confidence 9999999998654443 36888877777777765444443
No 328
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=27.63 E-value=1.6e+02 Score=23.82 Aligned_cols=47 Identities=11% Similarity=0.079 Sum_probs=24.1
Q ss_pred ChHHHHHHHHhCCCCccc-cc-cccHHHHHHHHHHhcCCCCEEEEcCCC
Q 015421 333 SGVLIWKTLVNNGLSIPC-FA-VANMKDAVNHARRMATNGDAIVLSPGC 379 (407)
Q Consensus 333 ~~~~~~~~l~~~~~~~~~-~~-~~~~~~a~~~a~~~~~~gd~vL~~~G~ 379 (407)
+...+.+.++..|..... .. .++.++..+.+.+..+..|+|+..+|.
T Consensus 20 n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~ 68 (133)
T cd00758 20 NGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGT 68 (133)
T ss_pred hHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCC
Confidence 344566666666543221 12 334444444444444457988887553
No 329
>PRK08118 topology modulation protein; Reviewed
Probab=27.56 E-value=69 Score=27.25 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=17.2
Q ss_pred cEEEEecC--CChHhHHHHHHHHHH
Q 015421 44 KILAVTGT--NGKSTVVTFVGQMLN 66 (407)
Q Consensus 44 ~~I~VTGT--nGKTTt~~~l~~iL~ 66 (407)
+.|.|.|+ .||||.+..|+..+.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34667654 589999999988764
No 330
>PRK12378 hypothetical protein; Provisional
Probab=27.49 E-value=2.2e+02 Score=25.91 Aligned_cols=56 Identities=13% Similarity=0.108 Sum_probs=39.7
Q ss_pred HHHHHcCCCHHHHHHHhhcCCCCC------CceeEEeeecCCEEEEEcCCCCCHHHHHHHHhcc
Q 015421 233 VLGLDIGVDVEALNSTIEILRTPP------HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL 290 (407)
Q Consensus 233 a~~~~lgi~~~~i~~~L~~~~~~~------gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~ 290 (407)
.-|...++|.+.|.++|+.-.+-. -++|-+ ..+|+.||.++.-.|..-+.+-++.+
T Consensus 52 ~~Ak~~nmPkd~IerAIkk~~g~~~~~~~e~~YEgy--gPgGvaiiVe~lTDN~nRt~~~vr~~ 113 (235)
T PRK12378 52 ERAKKANVPKDVIERAIKKAKGGGGEDYEEVRYEGF--GPNGVMVIVECLTDNVNRTVANVRSA 113 (235)
T ss_pred HHHHHhCCCHHHHHHHHHhccCCCCCceEEEEEEEE--cCCCcEEEEEECCCCHHHHHHHHHHH
Confidence 677889999999999999876532 234444 35778888888666776665555543
No 331
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=27.42 E-value=49 Score=31.20 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=22.4
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHHh
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~~ 67 (407)
+..++++-|-| ||||+-.+|..+++.
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl~~p 57 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGLLKP 57 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 56799999999 599999999888775
No 332
>PF14207 DpnD-PcfM: DpnD/PcfM-like protein
Probab=27.39 E-value=67 Score=21.26 Aligned_cols=23 Identities=13% Similarity=0.307 Sum_probs=19.6
Q ss_pred ccccHHHHHHHHHHhcCCCCEEE
Q 015421 352 AVANMKDAVNHARRMATNGDAIV 374 (407)
Q Consensus 352 ~~~~~~~a~~~a~~~~~~gd~vL 374 (407)
..++.++|++.+...-.++++||
T Consensus 17 eA~s~eeA~~~v~~~y~~~eivL 39 (48)
T PF14207_consen 17 EAESEEEAIEKVRDAYRNEEIVL 39 (48)
T ss_pred EeCCHHHHHHHHHHHHhCCCEEc
Confidence 46789999999999988999765
No 333
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=27.21 E-value=1.6e+02 Score=23.77 Aligned_cols=48 Identities=13% Similarity=0.229 Sum_probs=25.2
Q ss_pred ChHHHHHHHHhCCCCc-cc-cccccHHHHHHHHHHhcCCCCEEEEcCCCC
Q 015421 333 SGVLIWKTLVNNGLSI-PC-FAVANMKDAVNHARRMATNGDAIVLSPGCA 380 (407)
Q Consensus 333 ~~~~~~~~l~~~~~~~-~~-~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~ 380 (407)
+...+.+.++..|... .. ...+|.++..+.+.+.....|+|+..+|.+
T Consensus 19 ~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~g 68 (135)
T smart00852 19 NGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGTG 68 (135)
T ss_pred cHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 3445666666665421 11 123455544444444445568888776644
No 334
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.20 E-value=63 Score=28.47 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=20.1
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+++|+|-| ||||...+|.-++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56789999997 79998888876654
No 335
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=27.13 E-value=1.1e+02 Score=27.95 Aligned_cols=56 Identities=9% Similarity=0.065 Sum_probs=39.8
Q ss_pred HHHHHcCCCHHHHHHHhhcCCCC-------CCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhcc
Q 015421 233 VLGLDIGVDVEALNSTIEILRTP-------PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL 290 (407)
Q Consensus 233 a~~~~lgi~~~~i~~~L~~~~~~-------~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~ 290 (407)
.-|...++|.+.|..+|+...+- ..++|.+ ..+|+.+|.++.-.|..-+..-++.+
T Consensus 50 ~~Ak~~nmPk~~IerAIkk~~~~~~~~~~~~~~yEg~--gP~Gvaiive~lTDN~nRt~~~ir~~ 112 (234)
T PF01709_consen 50 EKAKKANMPKDNIERAIKKASGKSDGANYEEITYEGY--GPGGVAIIVECLTDNKNRTVSDIRSI 112 (234)
T ss_dssp HHHHHTT--HHHHHHHHHHCCSTSST---EEEEEEEE--ETTTEEEEEEEEES-HHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHhcCcCCCCcCceEEEEEEE--cCCCcEEEEEEeCCCHhHHHHHHHHH
Confidence 77888999999999999998763 2355555 46888888888667877776665543
No 336
>PRK00110 hypothetical protein; Validated
Probab=27.04 E-value=1.7e+02 Score=26.86 Aligned_cols=55 Identities=11% Similarity=0.040 Sum_probs=39.3
Q ss_pred HHHHHcCCCHHHHHHHhhcCCCC-------CCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhc
Q 015421 233 VLGLDIGVDVEALNSTIEILRTP-------PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMD 289 (407)
Q Consensus 233 a~~~~lgi~~~~i~~~L~~~~~~-------~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~ 289 (407)
.-|...++|.+.|.++|+...+- .-++|-+ ..+|+.||.++.-.|..-+.+-++.
T Consensus 54 ~~Ak~~nmPkd~IerAIkk~~g~~~~~~~~e~~YEg~--gP~GvaiiVe~lTDN~nRt~~~vR~ 115 (245)
T PRK00110 54 DKAKAANMPKDNIERAIKKGTGELDGANYEEIRYEGY--GPGGVAIIVEALTDNRNRTAAEVRH 115 (245)
T ss_pred HHHHHhCCCHHHHHHHHHHhcCCCCccceEEEEEEEE--cCCCeEEEEEEecCCHHHHHHHHHH
Confidence 67788999999999999988753 1244444 3578888888866666655555544
No 337
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=26.97 E-value=1.4e+02 Score=31.25 Aligned_cols=55 Identities=25% Similarity=0.173 Sum_probs=38.0
Q ss_pred HHHHHHHhcCCc---eeeHHHHHH---hhC---CCCCcEEEEec--CCChHhHHHHHHHHHHh-cCC
Q 015421 16 TGLACLLQSGKR---VMSELDFAA---QVI---PRSIKILAVTG--TNGKSTVVTFVGQMLNH-LGI 70 (407)
Q Consensus 16 p~l~~a~~~~~~---~l~~~~~~~---~~~---~~~~~~I~VTG--TnGKTTt~~~l~~iL~~-~g~ 70 (407)
-.++.....|.. .+++++.+. +.. .++..+|.+|| -.||||.+..|+..|.. .|.
T Consensus 356 t~ir~~l~~G~~pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~ 422 (568)
T PRK05537 356 TELRRRLREGLEIPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGR 422 (568)
T ss_pred HHHHHHHHCCCCCChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCc
Confidence 345556666654 478888654 222 13455899998 57899999999999986 454
No 338
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=26.90 E-value=1.5e+02 Score=27.99 Aligned_cols=69 Identities=13% Similarity=0.047 Sum_probs=50.1
Q ss_pred cEEEEEec-ccccccCC-ccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeCC--ChhhHHHH
Q 015421 100 QVAVVEVS-SYQMEIPN-KYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG--NQHLNEAI 172 (407)
Q Consensus 100 ~~~V~E~g-~~~l~~~~-~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~d--d~~~~~~~ 172 (407)
+++=+|.+ ....+... ...+|+++|+..+ .|.|++-+-+.+...++...+.++|.+|+-.. .|...-++
T Consensus 188 ~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL----~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IA 260 (311)
T PF12147_consen 188 DIARFEQGDAFDRDSLAALDPAPTLAIVSGL----YELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIA 260 (311)
T ss_pred cceEEEecCCCCHhHhhccCCCCCEEEEecc----hhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHH
Confidence 44677777 33333232 2357999999998 68899989898999999999999999999763 45554444
No 339
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=26.88 E-value=48 Score=31.43 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=21.4
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..++++.|.| ||||+..+|..++.
T Consensus 32 ~Gei~gllGpNGaGKSTLl~~l~Gl~~ 58 (306)
T PRK13537 32 RGECFGLLGPNGAGKTTTLRMLLGLTH 58 (306)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56789999998 79999999987765
No 340
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=26.86 E-value=81 Score=28.60 Aligned_cols=29 Identities=24% Similarity=0.425 Sum_probs=25.7
Q ss_pred CcEEEEec--CCChHhHHHHHHHHHHhcCCc
Q 015421 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIE 71 (407)
Q Consensus 43 ~~~I~VTG--TnGKTTt~~~l~~iL~~~g~~ 71 (407)
+|.|.||| ..||||-+.-|...|.+.|.+
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K 31 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTK 31 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhccc
Confidence 47889998 789999999999999999854
No 341
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=26.76 E-value=1e+02 Score=29.58 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=20.1
Q ss_pred HHHHHhhCCCCCcEEEEec--CCChHhHHHHHHHHH
Q 015421 32 LDFAAQVIPRSIKILAVTG--TNGKSTVVTFVGQML 65 (407)
Q Consensus 32 ~~~~~~~~~~~~~~I~VTG--TnGKTTt~~~l~~iL 65 (407)
.+++.... +....|.|+| ..||||+...|...+
T Consensus 134 ~~~L~~~v-~~~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 134 ASVIRSAI-DSRLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred HHHHHHHH-HcCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34555554 2334567877 468999886665544
No 342
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=26.68 E-value=60 Score=36.15 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=22.8
Q ss_pred EEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 45 ~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
++.|+|- .||||+...+..+++..|+++.
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~ 394 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVR 394 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 4556654 4899999999999999998763
No 343
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=26.58 E-value=1.5e+02 Score=25.41 Aligned_cols=48 Identities=19% Similarity=0.365 Sum_probs=25.3
Q ss_pred ChHHHHHHHHhCCCCc-cccccccHHHHHHH-HHHhcCCCCEEEEcCCCC
Q 015421 333 SGVLIWKTLVNNGLSI-PCFAVANMKDAVNH-ARRMATNGDAIVLSPGCA 380 (407)
Q Consensus 333 ~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~-a~~~~~~gd~vL~~~G~~ 380 (407)
+...+.+.+...|... .+..++|-.+.+.. +....+..|+|++++|.+
T Consensus 20 n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G 69 (170)
T cd00885 20 NAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLG 69 (170)
T ss_pred HHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 3456677777766532 22233443333333 333444678888875543
No 344
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=26.47 E-value=57 Score=29.26 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=22.5
Q ss_pred cEEEEecCCChHhHHHHHHHHHHhcCCce
Q 015421 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 44 ~~I~VTGTnGKTTt~~~l~~iL~~~g~~~ 72 (407)
-++|.+|| ||+|-|+-+.+=.+.-|+++
T Consensus 7 lV~GpAgS-GKSTyC~~~~~h~e~~gRs~ 34 (273)
T KOG1534|consen 7 LVMGPAGS-GKSTYCSSMYEHCETVGRSV 34 (273)
T ss_pred EEEccCCC-CcchHHHHHHHHHHhhCcee
Confidence 46777775 99999998888888888765
No 345
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=26.45 E-value=2.8e+02 Score=24.59 Aligned_cols=70 Identities=14% Similarity=0.092 Sum_probs=48.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhccC---CCcEEEEECCCCCCCCCCCCcchHhhhhhccCccEEEEeCCChHHHHHHHH
Q 015421 267 QGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLV 342 (407)
Q Consensus 267 ~~~~iidD~~a~np~s~~~al~~~~---~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~g~~~~~~~~~l~ 342 (407)
+.+.+|-|- ..+.++..++|+.+. ....++++|+.-++|..+. ++.+.+.+...+.+.|+.-..+.+.+.
T Consensus 17 ~ri~vigDI-HG~~~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s~-----~vl~~l~~~~~~~v~GNHE~~~l~~~~ 89 (218)
T PRK11439 17 RHIWLVGDI-HGCFEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSL-----RCLQLLEEHWVRAVRGNHEQMALDALA 89 (218)
T ss_pred CeEEEEEcc-cCCHHHHHHHHHhcCCCcccCEEEEcCcccCCCcCHH-----HHHHHHHcCCceEeeCchHHHHHHHHH
Confidence 346788997 569999999999874 3457788899999988763 344544433345677877666665553
No 346
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=26.33 E-value=72 Score=28.58 Aligned_cols=23 Identities=43% Similarity=0.622 Sum_probs=18.9
Q ss_pred cEEEEecCC--ChHhHHHHHHHHHH
Q 015421 44 KILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 44 ~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
.+|+|+|.+ ||||++.+|+.-|.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 579999875 79999999987663
No 347
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=26.28 E-value=3.1e+02 Score=25.20 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=8.1
Q ss_pred HhhhhhccCccEEEEeC
Q 015421 315 EKLIEPLNHHRCVITFG 331 (407)
Q Consensus 315 ~~~~~~l~~~~~v~~~g 331 (407)
+++++.+.+.+.|+++|
T Consensus 119 ~~~~~~i~~a~~I~i~G 135 (278)
T PRK11557 119 HECVTMLRSARRIILTG 135 (278)
T ss_pred HHHHHHHhcCCeEEEEe
Confidence 34444444445555554
No 348
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=26.18 E-value=55 Score=30.04 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=21.3
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+++|+|-| ||||...+|+-++.
T Consensus 38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 64 (260)
T PRK10744 38 KNQVTAFIGPSGCGKSTLLRTFNRMYE 64 (260)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 56799999997 89999999987764
No 349
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=26.05 E-value=75 Score=27.32 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=18.7
Q ss_pred cEEEEecCC--ChHhHHHHHHHHHH
Q 015421 44 KILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 44 ~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
.++.|+|.+ ||||....|+..+.
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 467788765 79999999999875
No 350
>PF09145 Ubiq-assoc: Ubiquitin-associated; InterPro: IPR015228 Ubiquitin-associated domains contain approximately 40 residues and bind ubiquitin noncovalently. They adopt a secondary structure consisting of three alpha-helices, and have been identified in various modular proteins involved in protein trafficking, clathrin assembly/disassembly, DNA repair, proteasomal degradation, and cell cycle regulation []. ; PDB: 1PGY_A.
Probab=25.99 E-value=11 Score=24.25 Aligned_cols=27 Identities=19% Similarity=0.409 Sum_probs=20.2
Q ss_pred CCcccccChhhhhHHHHHHHhhhcccC
Q 015421 380 ASFDEFRNFEHRGMVFQELAFFSKHDT 406 (407)
Q Consensus 380 ~s~~~~~~~~~r~~~~~~~~~~l~~~~ 406 (407)
-|++.-.+|-+||..|+++++.++.+.
T Consensus 18 Lsid~A~~yYe~Gi~Ye~~~~~~~~r~ 44 (46)
T PF09145_consen 18 LSIDKANDYYERGILYEDLIEKLRKRK 44 (46)
T ss_dssp --SHHHHHHHHHH-SSHHHHHHHHHS-
T ss_pred CCHHHHHHHHHcCchHHHHHHHHHHHh
Confidence 577888889999999999999987653
No 351
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=25.88 E-value=83 Score=25.88 Aligned_cols=47 Identities=17% Similarity=0.231 Sum_probs=27.0
Q ss_pred hHHHHHHHHhCCCCc-ccccc-ccHHHHHHHHHHhcCCCCEEEEcCCCC
Q 015421 334 GVLIWKTLVNNGLSI-PCFAV-ANMKDAVNHARRMATNGDAIVLSPGCA 380 (407)
Q Consensus 334 ~~~~~~~l~~~~~~~-~~~~~-~~~~~a~~~a~~~~~~gd~vL~~~G~~ 380 (407)
...+.+.+++.|... ....+ +|.++..+.+...+...|+|+..+|.+
T Consensus 19 ~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~D~VittGG~g 67 (144)
T PF00994_consen 19 GPFLAALLEELGIEVIRYGIVPDDPDAIKEALRRALDRADLVITTGGTG 67 (144)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred HHHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhccCCEEEEcCCcC
Confidence 355677777766532 12233 445544455545556779999876543
No 352
>PRK00023 cmk cytidylate kinase; Provisional
Probab=25.83 E-value=73 Score=28.66 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=19.9
Q ss_pred CcEEEEecC--CChHhHHHHHHHHHH
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQMLN 66 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL~ 66 (407)
..+|+|+|. .||||++.+|+.-|.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~ 29 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLG 29 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 368999987 589999999988773
No 353
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=25.81 E-value=64 Score=25.43 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=16.7
Q ss_pred EEEecC--CChHhHHHHHHHHHH
Q 015421 46 LAVTGT--NGKSTVVTFVGQMLN 66 (407)
Q Consensus 46 I~VTGT--nGKTTt~~~l~~iL~ 66 (407)
|.+.|- .|||+++..+++-+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 345565 799999999999884
No 354
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=25.79 E-value=63 Score=36.36 Aligned_cols=31 Identities=26% Similarity=0.391 Sum_probs=24.3
Q ss_pred CcEEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
-++..|+|- .||||+...+..+++..|+++.
T Consensus 397 ~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~ 429 (1102)
T PRK13826 397 ARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVV 429 (1102)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 345566654 4899999999999999998873
No 355
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=25.78 E-value=47 Score=29.52 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=20.6
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..++++.|-| ||||...+|..++.
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 45789999997 79999999887654
No 356
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=25.73 E-value=95 Score=33.51 Aligned_cols=31 Identities=23% Similarity=0.212 Sum_probs=23.2
Q ss_pred CcEEEEecCC--ChHhHHHHHHHHHH-hcC-Ccee
Q 015421 43 IKILAVTGTN--GKSTVVTFVGQMLN-HLG-IEAF 73 (407)
Q Consensus 43 ~~~I~VTGTn--GKTTt~~~l~~iL~-~~g-~~~~ 73 (407)
..+|++.|.| |||||...|+..+. ..| .++.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~ 219 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLA 219 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEE
Confidence 4578888876 69999999998884 555 3553
No 357
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=25.68 E-value=48 Score=28.65 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=22.1
Q ss_pred CCCcEEEEecCCC--hHhHHHHHHHHHHh
Q 015421 41 RSIKILAVTGTNG--KSTVVTFVGQMLNH 67 (407)
Q Consensus 41 ~~~~~I~VTGTnG--KTTt~~~l~~iL~~ 67 (407)
.+..+++|.|-|| |||...+|..++..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 51 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIP 51 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCC
Confidence 3567999999875 99999999887754
No 358
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=25.68 E-value=72 Score=27.88 Aligned_cols=24 Identities=29% Similarity=0.614 Sum_probs=19.9
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL 65 (407)
+..+++|+|-| ||||...+|.-++
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56799999997 7999999887654
No 359
>COG5623 CLP1 Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
Probab=25.53 E-value=78 Score=30.00 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=22.6
Q ss_pred CCcEEEEec--CCChHhHHHHHHHHHHhcCCce
Q 015421 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 42 ~~~~I~VTG--TnGKTTt~~~l~~iL~~~g~~~ 72 (407)
..|.+.|.| +|||||.+..|.+-.-..|+++
T Consensus 98 ~gp~v~vvGgsq~Gkts~~~tL~syalk~~~~p 130 (424)
T COG5623 98 KGPTVMVVGGSQNGKTSFCFTLISYALKLGKKP 130 (424)
T ss_pred cCCEEEEECCCcCCceeHHHHHHHHHHHhcCCc
Confidence 367777776 6999999987776655556654
No 360
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=25.51 E-value=70 Score=27.22 Aligned_cols=16 Identities=38% Similarity=0.634 Sum_probs=14.8
Q ss_pred cCCChHhHHHHHHHHH
Q 015421 50 GTNGKSTVVTFVGQML 65 (407)
Q Consensus 50 GTnGKTTt~~~l~~iL 65 (407)
|-.||||++.-|+..|
T Consensus 9 gG~GKSt~a~nLA~~l 24 (179)
T cd03110 9 GGTGKTTVTAALAALL 24 (179)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 6789999999999999
No 361
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=25.38 E-value=98 Score=26.46 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=22.0
Q ss_pred EEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421 46 LAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 46 I~VTGT--nGKTTt~~~l~~iL~~~g~~~ 72 (407)
|.|||- .||||...-+.+.|+..|..+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 678886 589999999999998887765
No 362
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=25.34 E-value=1.3e+02 Score=27.94 Aligned_cols=65 Identities=11% Similarity=0.123 Sum_probs=46.3
Q ss_pred HHHHHcCCCHHHHHHHhhcCCCC----CCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC--CCcEEEEECCC
Q 015421 233 VLGLDIGVDVEALNSTIEILRTP----PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQ 302 (407)
Q Consensus 233 a~~~~lgi~~~~i~~~L~~~~~~----~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~--~~~~i~V~g~~ 302 (407)
+..+..|-+..+++.-|+.|+.. ..||-++. .+|..+.+ ....+++...+..+. +-+.|+|.|+.
T Consensus 7 ~~~~~~~~~~~e~~~~l~~f~~~~~~~~~~f~VIK--~GG~~~~~---~~~~~~l~~dla~L~~lGl~~VlVHGgg 77 (271)
T cd04236 7 AFLHQKGGDPREARYWLTQFQIAMPNDWPAFAVLE--VDHSVFRS---LEMVQSLSFGLAFLQRMDMKLLVVMGLS 77 (271)
T ss_pred HHHHHhCCCHHHHHHHHHHhhccCCCCCCCEEEEE--EChhhhcC---chhHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 34567789999999999999975 47999984 56654433 345666666655553 56888998864
No 363
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.20 E-value=70 Score=29.57 Aligned_cols=25 Identities=24% Similarity=0.538 Sum_probs=21.2
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+++|.|.| ||||...+|.-++.
T Consensus 49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 75 (269)
T cd03294 49 EGEIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56799999997 89999999987664
No 364
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=25.16 E-value=82 Score=30.89 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=18.8
Q ss_pred CcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 43 IKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 43 ~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
..+|++.|.+ |||||...|+.-+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577777765 69999999998764
No 365
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.15 E-value=69 Score=27.82 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=18.2
Q ss_pred CCcEEEEecCCC--hHhHHHHHHHH
Q 015421 42 SIKILAVTGTNG--KSTVVTFVGQM 64 (407)
Q Consensus 42 ~~~~I~VTGTnG--KTTt~~~l~~i 64 (407)
+..+++|+|.|| |||...+|+-+
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 567999999986 88887777643
No 366
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=25.10 E-value=86 Score=26.71 Aligned_cols=23 Identities=26% Similarity=0.570 Sum_probs=18.4
Q ss_pred cEEEEec--CCChHhHHHHHHHHHH
Q 015421 44 KILAVTG--TNGKSTVVTFVGQMLN 66 (407)
Q Consensus 44 ~~I~VTG--TnGKTTt~~~l~~iL~ 66 (407)
++|.++| ..||||.+..|...+.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4677777 4699999999988764
No 367
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=25.08 E-value=3.2e+02 Score=24.31 Aligned_cols=69 Identities=13% Similarity=0.113 Sum_probs=47.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhccC---CCcEEEEECCCCCCCCCCCCcchHhhhhhccCccEEEEeCCChHHHHHHH
Q 015421 267 QGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTL 341 (407)
Q Consensus 267 ~~~~iidD~~a~np~s~~~al~~~~---~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~g~~~~~~~~~l 341 (407)
+.+.+|-|. ..|.++++++++.+. +...++.+|+.-++|..+. ++.+.+.....+.+.|+.-..+.+.+
T Consensus 15 ~ri~visDi-Hg~~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~~-----~~l~~l~~~~~~~v~GNHE~~~~~~~ 86 (218)
T PRK09968 15 RHIWVVGDI-HGEYQLLQSRLHQLSFCPETDLLISVGDNIDRGPESL-----NVLRLLNQPWFISVKGNHEAMALDAF 86 (218)
T ss_pred CeEEEEEec-cCCHHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCHH-----HHHHHHhhCCcEEEECchHHHHHHHH
Confidence 357889997 569999999998774 3457788899998887663 34444433345677787766555544
No 368
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=25.01 E-value=71 Score=28.39 Aligned_cols=25 Identities=44% Similarity=0.656 Sum_probs=19.1
Q ss_pred cEEEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 44 ~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~ 72 (407)
.+||+||. .||||++. .|++.|..+
T Consensus 2 ~iVGLTGgiatGKStVs~----~f~~~G~~v 28 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQ----VFKALGIPV 28 (225)
T ss_pred eEEEeecccccChHHHHH----HHHHcCCcE
Confidence 57999997 68998765 566788765
No 369
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=24.70 E-value=75 Score=27.41 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=20.0
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+++|+|-| ||||...+|..++.
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56789999997 69998888876654
No 370
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=24.62 E-value=83 Score=28.68 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.0
Q ss_pred CCcEEEEecCCC--hHhHHHHHHHHHHh
Q 015421 42 SIKILAVTGTNG--KSTVVTFVGQMLNH 67 (407)
Q Consensus 42 ~~~~I~VTGTnG--KTTt~~~l~~iL~~ 67 (407)
+..+.+|.|-|| |||+..+|..+|..
T Consensus 24 ~~~~~~IvG~NGsGKStll~Ai~~ll~~ 51 (251)
T cd03273 24 DPQFNAITGLNGSGKSNILDAICFVLGI 51 (251)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhcc
Confidence 456788999885 99999999999964
No 371
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=24.57 E-value=75 Score=28.51 Aligned_cols=29 Identities=31% Similarity=0.493 Sum_probs=22.4
Q ss_pred cEEEEec--CCChHhHHHHHHHHHHhcCCce
Q 015421 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 44 ~~I~VTG--TnGKTTt~~~l~~iL~~~g~~~ 72 (407)
.+|+|=| ..||+|++..|+.-|.-..+.+
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldT 35 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDT 35 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeecc
Confidence 6888987 5699999999998876544433
No 372
>PRK04182 cytidylate kinase; Provisional
Probab=24.56 E-value=71 Score=27.00 Aligned_cols=21 Identities=33% Similarity=0.719 Sum_probs=17.1
Q ss_pred EEEEecC--CChHhHHHHHHHHH
Q 015421 45 ILAVTGT--NGKSTVVTFVGQML 65 (407)
Q Consensus 45 ~I~VTGT--nGKTTt~~~l~~iL 65 (407)
+|.|+|. .||||.+..|+.-|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 5777775 58999999998776
No 373
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=24.54 E-value=1.2e+02 Score=30.33 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=22.2
Q ss_pred CcEEEEecC--CChHhHHHHHHHHH-HhcCCce
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQML-NHLGIEA 72 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL-~~~g~~~ 72 (407)
..+|.++|. .|||||+.-|+.-+ ...|.++
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V 255 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSV 255 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeE
Confidence 457888875 58999999999754 4566665
No 374
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=24.45 E-value=74 Score=27.90 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=19.5
Q ss_pred EEEEecCC--ChHhHHHHHHHHHHh
Q 015421 45 ILAVTGTN--GKSTVVTFVGQMLNH 67 (407)
Q Consensus 45 ~I~VTGTn--GKTTt~~~l~~iL~~ 67 (407)
+++|.|.| ||||+...|.-++..
T Consensus 24 ~~~i~G~nGsGKStll~al~~l~~~ 48 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWVLGE 48 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhcc
Confidence 78999998 799999999877743
No 375
>PRK01215 competence damage-inducible protein A; Provisional
Probab=24.33 E-value=1.6e+02 Score=27.27 Aligned_cols=48 Identities=17% Similarity=0.286 Sum_probs=26.2
Q ss_pred ChHHHHHHHHhCCCCcc-c-cccccHHHHHHHHHHhcCCCCEEEEcCCCC
Q 015421 333 SGVLIWKTLVNNGLSIP-C-FAVANMKDAVNHARRMATNGDAIVLSPGCA 380 (407)
Q Consensus 333 ~~~~~~~~l~~~~~~~~-~-~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~ 380 (407)
+...+.+.+...|.... . .+-+|.++..+.+.......|+|++++|.+
T Consensus 24 n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVIttGG~g 73 (264)
T PRK01215 24 NASWIARRLTYLGYTVRRITVVMDDIEEIVSAFREAIDRADVVVSTGGLG 73 (264)
T ss_pred hHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 44566777777765321 1 233445544444444444569988875543
No 376
>PRK14530 adenylate kinase; Provisional
Probab=24.24 E-value=81 Score=27.96 Aligned_cols=27 Identities=22% Similarity=0.387 Sum_probs=19.8
Q ss_pred cEEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 44 ~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
+.|.|.|. .||||.+..|+..+ |+.+.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~---~~~~i 32 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF---GVEHV 32 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh---CCeEE
Confidence 45777776 48999999998777 45443
No 377
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=24.21 E-value=2e+02 Score=27.13 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=21.5
Q ss_pred CCCcEEEEecCC--ChHhHHHHHHHHHHhc
Q 015421 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (407)
Q Consensus 41 ~~~~~I~VTGTn--GKTTt~~~l~~iL~~~ 68 (407)
++..+|.|+|++ ||||....+...|...
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~ 131 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDS 131 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccC
Confidence 468899999986 6888877777766554
No 378
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=24.08 E-value=65 Score=30.15 Aligned_cols=31 Identities=26% Similarity=0.315 Sum_probs=23.9
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHHhcCCce
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~ 72 (407)
+..++++-|-| |||||-.||.-++...+=.+
T Consensus 49 ~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v 81 (325)
T COG4586 49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV 81 (325)
T ss_pred CCcEEEEEcCCCCcchhhHHHHhCccccCCCeE
Confidence 34589999988 59999999998887554333
No 379
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=24.02 E-value=82 Score=28.01 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=18.2
Q ss_pred CcEEEEecCC--ChHhHHHHHHHH
Q 015421 43 IKILAVTGTN--GKSTVVTFVGQM 64 (407)
Q Consensus 43 ~~~I~VTGTn--GKTTt~~~l~~i 64 (407)
..+++|.|.| ||||+-.+|..+
T Consensus 25 ~~i~~ivGpNGaGKSTll~~i~~~ 48 (212)
T cd03274 25 KSFSAIVGPNGSGKSNVIDSMLFV 48 (212)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 3689999998 799999988744
No 380
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=23.96 E-value=5.2e+02 Score=24.46 Aligned_cols=33 Identities=9% Similarity=-0.002 Sum_probs=22.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhccCCCcEEEEECCC
Q 015421 269 VTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQ 302 (407)
Q Consensus 269 ~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~ 302 (407)
+.++.|+ ...+.++..+++.++.+-+++.+|..
T Consensus 236 ~D~vid~-~G~~~~~~~~~~~l~~~G~iv~~G~~ 268 (343)
T PRK09880 236 FDVSFEV-SGHPSSINTCLEVTRAKGVMVQVGMG 268 (343)
T ss_pred CCEEEEC-CCCHHHHHHHHHHhhcCCEEEEEccC
Confidence 4555665 55677888888888765567777753
No 381
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=23.94 E-value=64 Score=28.84 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=20.0
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+++|+|.| ||||...+|..++.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASLIS 58 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 56799999987 79998888876653
No 382
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=23.89 E-value=85 Score=30.57 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=18.9
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+.-.|.|+|-+ |||||...+...+.
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45689999876 79998877766654
No 383
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=23.85 E-value=73 Score=29.11 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=19.3
Q ss_pred CCcEEEEec--CCChHhHHHHHHHH
Q 015421 42 SIKILAVTG--TNGKSTVVTFVGQM 64 (407)
Q Consensus 42 ~~~~I~VTG--TnGKTTt~~~l~~i 64 (407)
..|.|+|.| +.||||+...+...
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~ 49 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGR 49 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCC
Confidence 678899999 77999998888764
No 384
>PRK10908 cell division protein FtsE; Provisional
Probab=23.79 E-value=80 Score=28.06 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=21.0
Q ss_pred CCCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 41 ~~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
.+..+++|.|-| ||||...+|.-++.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356799999997 89999999876553
No 385
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=23.79 E-value=74 Score=34.17 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=19.9
Q ss_pred cEEEEecCC--ChHhHHHHHHHHHH
Q 015421 44 KILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 44 ~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
.+|+|+|+. ||||++..|+..|.
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~ 26 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLG 26 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 479999985 79999999998884
No 386
>PRK12338 hypothetical protein; Provisional
Probab=23.78 E-value=79 Score=30.25 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=20.1
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHH
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL 65 (407)
...+|.|+|+ .||||++..|+.-|
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l 28 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTL 28 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHC
Confidence 3468999985 58999999999887
No 387
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=23.71 E-value=77 Score=26.54 Aligned_cols=21 Identities=33% Similarity=0.708 Sum_probs=16.8
Q ss_pred EEEEecC--CChHhHHHHHHHHH
Q 015421 45 ILAVTGT--NGKSTVVTFVGQML 65 (407)
Q Consensus 45 ~I~VTGT--nGKTTt~~~l~~iL 65 (407)
+|.|+|. .||||++..++.-|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 6888886 47999999887765
No 388
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=23.61 E-value=1.1e+02 Score=25.01 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=19.9
Q ss_pred EEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421 46 LAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 46 I~VTGT--nGKTTt~~~l~~iL~~~g~~~ 72 (407)
+.|+|. .||||.+..+...+...|..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v 30 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKV 30 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEE
Confidence 445554 489999999988887766665
No 389
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=23.60 E-value=4.1e+02 Score=21.68 Aligned_cols=96 Identities=16% Similarity=0.187 Sum_probs=47.7
Q ss_pred cEEEEECCCCCCCCCCCCcchHhhhhhcc-C-ccEEEEeCCC--h---HHHHHHHHhCCCCcccc-----ccccHHHHHH
Q 015421 294 KCVILLGGQAKVLNGQESNGFEKLIEPLN-H-HRCVITFGYS--G---VLIWKTLVNNGLSIPCF-----AVANMKDAVN 361 (407)
Q Consensus 294 ~~i~V~g~~~~~~~~~~~~~~~~~~~~l~-~-~~~v~~~g~~--~---~~~~~~l~~~~~~~~~~-----~~~~~~~a~~ 361 (407)
|.++|.|+....|. .++..+. . ...+++++.+ . ..+...++..+....+. ..++.+++++
T Consensus 1 k~~lItGa~~giG~--------~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (167)
T PF00106_consen 1 KTVLITGASSGIGR--------ALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIE 72 (167)
T ss_dssp EEEEEETTTSHHHH--------HHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHH
T ss_pred CEEEEECCCCHHHH--------HHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccc
Confidence 45788886654432 2444433 3 4567777655 2 33444455443222222 1235566667
Q ss_pred HHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHHHH
Q 015421 362 HARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 399 (407)
Q Consensus 362 ~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~~~ 399 (407)
.+.+...+=|+++...|......+.+. ....|++++
T Consensus 73 ~~~~~~~~ld~li~~ag~~~~~~~~~~--~~~~~~~~~ 108 (167)
T PF00106_consen 73 EVIKRFGPLDILINNAGIFSDGSLDDL--SEEELERVF 108 (167)
T ss_dssp HHHHHHSSESEEEEECSCTTSBSGGGS--HHHHHHHHH
T ss_pred ccccccccccccccccccccccccccc--cchhhhhcc
Confidence 766555566877765554443333333 334444443
No 390
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=23.42 E-value=94 Score=31.69 Aligned_cols=26 Identities=35% Similarity=0.463 Sum_probs=16.4
Q ss_pred HHhhCCCCCcEEEEecCC--ChHhHHHH
Q 015421 35 AAQVIPRSIKILAVTGTN--GKSTVVTF 60 (407)
Q Consensus 35 ~~~~~~~~~~~I~VTGTn--GKTTt~~~ 60 (407)
+.+......-+|.|||.. |||||...
T Consensus 234 l~~~~~~~~GlilitGptGSGKTTtL~a 261 (486)
T TIGR02533 234 FERLIRRPHGIILVTGPTGSGKTTTLYA 261 (486)
T ss_pred HHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 333332334478888865 79998864
No 391
>PRK13946 shikimate kinase; Provisional
Probab=23.40 E-value=85 Score=27.06 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=18.1
Q ss_pred cEEEEec--CCChHhHHHHHHHHH
Q 015421 44 KILAVTG--TNGKSTVVTFVGQML 65 (407)
Q Consensus 44 ~~I~VTG--TnGKTTt~~~l~~iL 65 (407)
+.|.++| -.||||+..+|+.-|
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 4577776 469999999999988
No 392
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=23.33 E-value=1.2e+02 Score=26.63 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=16.9
Q ss_pred cEEEEecCCC--hHhHHHHHHHHHHh
Q 015421 44 KILAVTGTNG--KSTVVTFVGQMLNH 67 (407)
Q Consensus 44 ~~I~VTGTnG--KTTt~~~l~~iL~~ 67 (407)
..|+|+|.+| |||+...+...+..
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l~~ 27 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRALRQ 27 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 3688898875 77777766666654
No 393
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=23.22 E-value=62 Score=29.87 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=16.3
Q ss_pred CCcEEEEecCCChHhHHHHHHHHH
Q 015421 42 SIKILAVTGTNGKSTVVTFVGQML 65 (407)
Q Consensus 42 ~~~~I~VTGTnGKTTt~~~l~~iL 65 (407)
..-++|-+|| |||+.+..++..+
T Consensus 23 ~vLL~G~~Gt-GKT~lA~~la~~l 45 (262)
T TIGR02640 23 PVHLRGPAGT-GKTTLAMHVARKR 45 (262)
T ss_pred eEEEEcCCCC-CHHHHHHHHHHHh
Confidence 3444555554 9999999998754
No 394
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=23.15 E-value=81 Score=28.40 Aligned_cols=25 Identities=20% Similarity=0.468 Sum_probs=20.5
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+++|+|.| ||||...+|.-++.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (240)
T PRK09493 26 QGEVVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56799999997 79998888886653
No 395
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=23.12 E-value=83 Score=27.84 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=20.4
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+++|.|-| ||||...+|.-++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56789999997 89999888886653
No 396
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=23.11 E-value=97 Score=26.75 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=19.2
Q ss_pred CcEEEEecC--CChHhHHHHHHHHH
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQML 65 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL 65 (407)
.+++.|||- .||||++..+...|
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 467888875 58999999999988
No 397
>PRK14709 hypothetical protein; Provisional
Probab=23.05 E-value=60 Score=32.93 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=18.1
Q ss_pred ecCCChHhHHHHHHHHHHhc
Q 015421 49 TGTNGKSTVVTFVGQMLNHL 68 (407)
Q Consensus 49 TGTnGKTTt~~~l~~iL~~~ 68 (407)
+|.|||||...+|..+|...
T Consensus 213 ~G~NGKSt~~~~i~~llG~~ 232 (469)
T PRK14709 213 GGGNGKSVFLNVLAGILGDY 232 (469)
T ss_pred CCCCcHHHHHHHHHHHHhhh
Confidence 58899999999999999864
No 398
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=22.93 E-value=66 Score=26.42 Aligned_cols=20 Identities=40% Similarity=0.532 Sum_probs=14.6
Q ss_pred EEEecC--CChHhHHHHHHHHH
Q 015421 46 LAVTGT--NGKSTVVTFVGQML 65 (407)
Q Consensus 46 I~VTGT--nGKTTt~~~l~~iL 65 (407)
|.++|. .||||++..|...+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 344444 39999999998875
No 399
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=22.83 E-value=80 Score=28.44 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=20.5
Q ss_pred CcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 43 IKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 43 ~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
..+.+|.|-| ||||+..+|..+|.
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~~~l~ 48 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIRFVLS 48 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 4588999998 79999999998775
No 400
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=22.74 E-value=89 Score=27.54 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=19.3
Q ss_pred CcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 43 IKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 43 ~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
..+++|.|.| ||||....|...|-
T Consensus 22 ~g~~~i~G~NGsGKTTLl~ai~~~l~ 47 (204)
T cd03240 22 SPLTLIVGQNGAGKTTIIEALKYALT 47 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 3489999998 69999988877663
No 401
>PRK08356 hypothetical protein; Provisional
Probab=22.69 E-value=1.3e+02 Score=26.20 Aligned_cols=30 Identities=30% Similarity=0.402 Sum_probs=21.4
Q ss_pred CcEEEEecC--CChHhHHHHHHHHHHhcCCceeecc
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~~~g 76 (407)
..+|+|+|. .||||.+.+|. ..|+.+...|
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~----~~g~~~is~~ 36 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE----EKGFCRVSCS 36 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH----HCCCcEEeCC
Confidence 357899995 68999999994 3566654433
No 402
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=22.69 E-value=93 Score=35.72 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=14.1
Q ss_pred EEEecCC--ChHhHHHHHHHHH
Q 015421 46 LAVTGTN--GKSTVVTFVGQML 65 (407)
Q Consensus 46 I~VTGTn--GKTTt~~~l~~iL 65 (407)
++++||| ||||+-++|=-..
T Consensus 20 t~i~GTNG~GKTTlLRlip~FY 41 (1201)
T PF12128_consen 20 THICGTNGVGKTTLLRLIPFFY 41 (1201)
T ss_pred eeeecCCCCcHHHHHHHHHHhc
Confidence 6899998 5888766654443
No 403
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=22.66 E-value=79 Score=29.16 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=21.5
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
...+++|.|-| ||||...+|.-++.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 44 EKTVTAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 56789999986 89999999998775
No 404
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=22.65 E-value=88 Score=27.85 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=20.5
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL 65 (407)
+..+++|+|-| ||||...+|.-++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 56799999987 6999999998776
No 405
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=22.63 E-value=57 Score=29.26 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.0
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+++|+|.| ||||...+|.-++.
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56789999997 79999999887765
No 406
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=22.48 E-value=6e+02 Score=23.21 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=9.6
Q ss_pred ccccChhhhhHHHHHH
Q 015421 383 DEFRNFEHRGMVFQEL 398 (407)
Q Consensus 383 ~~~~~~~~r~~~~~~~ 398 (407)
..++.+..|-+.|-++
T Consensus 178 ~~~RE~~Ar~k~~~d~ 193 (239)
T PRK10834 178 VRLREFGARLGALADL 193 (239)
T ss_pred chHHHHHHHHHHHHHH
Confidence 3446666666666664
No 407
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.46 E-value=88 Score=27.71 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=20.5
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+++|+|-| ||||...+|+-++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 51 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56789999997 79999999986653
No 408
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=22.42 E-value=86 Score=28.70 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=20.6
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+++|+|-| ||||...+|.-++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56799999997 89999999886654
No 409
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=22.30 E-value=84 Score=29.16 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=20.7
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
...+++|.|.| ||||...+|.-++.
T Consensus 29 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~ 55 (277)
T PRK13652 29 RNSRIAVIGPNGAGKSTLFRHFNGILK 55 (277)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56799999998 79999999886654
No 410
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=22.23 E-value=1e+02 Score=30.82 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=19.0
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL 65 (407)
+..+|++.|.| |||||...|+..+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34688888887 6999999998753
No 411
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=22.18 E-value=1.9e+02 Score=24.55 Aligned_cols=46 Identities=15% Similarity=0.165 Sum_probs=22.7
Q ss_pred ChHHHHHHHHhCCCCc-cccccccHHHHHHHHHHhc---CCCCEEEEcCC
Q 015421 333 SGVLIWKTLVNNGLSI-PCFAVANMKDAVNHARRMA---TNGDAIVLSPG 378 (407)
Q Consensus 333 ~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~a~~~~---~~gd~vL~~~G 378 (407)
+...+...+++.|... .+..++|-.+.+..+++.+ ...|+|+.++|
T Consensus 23 n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGG 72 (163)
T TIGR02667 23 SGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGG 72 (163)
T ss_pred cHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 3445666666665432 1223334333343333322 35798888744
No 412
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=22.14 E-value=1.5e+02 Score=27.62 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=25.3
Q ss_pred CCcEEEEec--CCChHhHHHHHHHHHHhcCCcee
Q 015421 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 42 ~~~~I~VTG--TnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
+.++|++.| ..||||+...++..+...+.++.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~ 107 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVG 107 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEE
Confidence 346888986 56899999999999887776663
No 413
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=22.10 E-value=4.2e+02 Score=24.01 Aligned_cols=72 Identities=8% Similarity=0.012 Sum_probs=46.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhccC-----------CCcEEEEECCCCCCCCCCCCcchHhhhhhccCccEEEEeCCChHHH
Q 015421 269 VTWVDDSKATNLEATCTGLMDLK-----------GHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLI 337 (407)
Q Consensus 269 ~~iidD~~a~np~s~~~al~~~~-----------~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~g~~~~~~ 337 (407)
..+|-|- ..+.+.+.++++.+. ....++++|+.-|+|..+.+ .++-+.+.......+.+.|+....+
T Consensus 3 ~~vIGDI-HG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~-vl~~~~~~~~~~~~~~l~GNHE~~~ 80 (245)
T PRK13625 3 YDIIGDI-HGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLR-MIEIVWELVEKKAAYYVPGNHCNKL 80 (245)
T ss_pred eEEEEEC-ccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHH-HHHHHHHHhhCCCEEEEeCccHHHH
Confidence 4678886 468888999888752 23478888999999987743 2222322323345677788876555
Q ss_pred HHHHH
Q 015421 338 WKTLV 342 (407)
Q Consensus 338 ~~~l~ 342 (407)
.+.+.
T Consensus 81 l~~~~ 85 (245)
T PRK13625 81 YRFFL 85 (245)
T ss_pred HHHHh
Confidence 55553
No 414
>PRK02496 adk adenylate kinase; Provisional
Probab=22.06 E-value=1e+02 Score=26.42 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=17.0
Q ss_pred EEEEecC--CChHhHHHHHHHHH
Q 015421 45 ILAVTGT--NGKSTVVTFVGQML 65 (407)
Q Consensus 45 ~I~VTGT--nGKTTt~~~l~~iL 65 (407)
.|.|+|. .||||.+..|+.-+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 4677776 58999999998776
No 415
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=22.02 E-value=91 Score=25.68 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=19.7
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+++|+|.| ||||...+|.-.+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 56789999987 79998888866553
No 416
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=21.91 E-value=84 Score=26.69 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=17.2
Q ss_pred cEEEEecCC--ChHhHHHHHHHHH
Q 015421 44 KILAVTGTN--GKSTVVTFVGQML 65 (407)
Q Consensus 44 ~~I~VTGTn--GKTTt~~~l~~iL 65 (407)
++|+|.|.+ ||||.+..|...+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 468888877 6999888887754
No 417
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=21.80 E-value=4.9e+02 Score=22.36 Aligned_cols=21 Identities=5% Similarity=-0.116 Sum_probs=9.9
Q ss_pred cccccccHHHHHHHHHHhcCC
Q 015421 349 PCFAVANMKDAVNHARRMATN 369 (407)
Q Consensus 349 ~~~~~~~~~~a~~~a~~~~~~ 369 (407)
.++...|.++.-+...+...|
T Consensus 161 ~~~~~~~~~~l~~~~~~~~~p 181 (183)
T cd01453 161 TYKVILDETHLKELLLEHVTP 181 (183)
T ss_pred eeEeeCCHHHHHHHHHhcCCC
Confidence 445555555444444443333
No 418
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.79 E-value=92 Score=27.32 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=19.7
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL 65 (407)
+..+++|+|-| ||||...+|+-++
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999987 7999998888654
No 419
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=21.74 E-value=90 Score=27.24 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=20.0
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+++|+|-| ||||...+|+-++.
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56789999997 69998888876653
No 420
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=21.72 E-value=1.1e+02 Score=26.98 Aligned_cols=30 Identities=30% Similarity=0.476 Sum_probs=21.6
Q ss_pred CCcEEEEecCC--ChHhHHHHHHH--HHHhcCCc
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQ--MLNHLGIE 71 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~--iL~~~g~~ 71 (407)
+..+++|||.| ||||...++.. +|.+.|..
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~ 61 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCF 61 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCC
Confidence 34789999987 89998888764 44455543
No 421
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.70 E-value=81 Score=28.36 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=20.7
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+++|+|-| ||||...+|+-++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 56789999997 69999999887664
No 422
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=21.63 E-value=92 Score=28.40 Aligned_cols=25 Identities=24% Similarity=0.597 Sum_probs=20.2
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
...+++|.|.| ||||...+|+-++.
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~ 50 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 46789999987 69999998876653
No 423
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=21.44 E-value=98 Score=26.40 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=20.0
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+++|+|.| ||||...+|+-++.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 56789999987 69998888876654
No 424
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=21.44 E-value=94 Score=27.93 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=20.2
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+++|+|-| ||||...+|.-++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 56799999997 79998888876553
No 425
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=21.41 E-value=1.4e+02 Score=25.50 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=18.1
Q ss_pred cEEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 44 ~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
|++-|||- .||||+-.-+-. ....|.++.
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~-~~~~~~~~~ 31 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLK-RNRQGERVA 31 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH-HHTTTS-EE
T ss_pred CEEEEEcCCCCCHHHHHHHHHH-HhcCCceeE
Confidence 57788884 789988555444 455666764
No 426
>PRK15482 transcriptional regulator MurR; Provisional
Probab=21.39 E-value=3.6e+02 Score=25.00 Aligned_cols=10 Identities=20% Similarity=0.348 Sum_probs=5.0
Q ss_pred hcCCCCEEEE
Q 015421 366 MATNGDAIVL 375 (407)
Q Consensus 366 ~~~~gd~vL~ 375 (407)
...++|++++
T Consensus 179 ~~~~~Dv~i~ 188 (285)
T PRK15482 179 ALKKGDVQIA 188 (285)
T ss_pred cCCCCCEEEE
Confidence 3445555444
No 427
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=21.36 E-value=90 Score=28.21 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=18.2
Q ss_pred EEEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 45 ~I~VTGT--nGKTTt~~~l~~iL~~~g~~~ 72 (407)
+|+|||- .||||++.++ ++.|..+
T Consensus 2 iI~i~G~~gsGKstva~~~----~~~g~~~ 27 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFI----IENYNAV 27 (227)
T ss_pred EEEEeCCCCCCHHHHHHHH----HhcCCcE
Confidence 7899986 6899988877 5566555
No 428
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=21.34 E-value=1e+02 Score=25.97 Aligned_cols=21 Identities=38% Similarity=0.381 Sum_probs=16.4
Q ss_pred EEEEec--CCChHhHHHHHHHHH
Q 015421 45 ILAVTG--TNGKSTVVTFVGQML 65 (407)
Q Consensus 45 ~I~VTG--TnGKTTt~~~l~~iL 65 (407)
.|.|+| ..||||++..|+.-|
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 455655 359999999999887
No 429
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=21.34 E-value=1.2e+02 Score=28.87 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=18.8
Q ss_pred CcEEEEecCC--ChHhHHHHHHHHH
Q 015421 43 IKILAVTGTN--GKSTVVTFVGQML 65 (407)
Q Consensus 43 ~~~I~VTGTn--GKTTt~~~l~~iL 65 (407)
.-+|.|+|+. ||||++..|+.-|
T Consensus 92 p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 92 PIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3488999875 7999999888777
No 430
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=21.26 E-value=2.5e+02 Score=26.12 Aligned_cols=18 Identities=17% Similarity=0.235 Sum_probs=8.5
Q ss_pred hHhhhhhccCccEEEEeC
Q 015421 314 FEKLIEPLNHHRCVITFG 331 (407)
Q Consensus 314 ~~~~~~~l~~~~~v~~~g 331 (407)
++++++.+.+++.++++|
T Consensus 130 l~~~~~~i~~A~~I~i~G 147 (292)
T PRK11337 130 FHRAARFFYQARQRDLYG 147 (292)
T ss_pred HHHHHHHHHcCCeEEEEE
Confidence 334444444444455544
No 431
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=21.14 E-value=99 Score=27.02 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=20.1
Q ss_pred CCCcEEEEecCCC--hHhHHHHHHHHHH
Q 015421 41 RSIKILAVTGTNG--KSTVVTFVGQMLN 66 (407)
Q Consensus 41 ~~~~~I~VTGTnG--KTTt~~~l~~iL~ 66 (407)
.+..+++|+|.|| |||...+|.-++.
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~~ 56 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 3567999999885 8998888876654
No 432
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=21.06 E-value=99 Score=26.02 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=21.0
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+++|.|-| ||||...+|.-++.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56799999997 89999999987664
No 433
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.97 E-value=91 Score=27.63 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=19.7
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+++|+|-| ||||...+|..++.
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56789999987 59998888876553
No 434
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=20.95 E-value=53 Score=31.06 Aligned_cols=40 Identities=23% Similarity=0.339 Sum_probs=28.1
Q ss_pred cccHHHHHHHHHHhcCCC-CEEEEcCCCCCcccccChhhhh
Q 015421 353 VANMKDAVNHARRMATNG-DAIVLSPGCASFDEFRNFEHRG 392 (407)
Q Consensus 353 ~~~~~~a~~~a~~~~~~g-d~vL~~~G~~s~~~~~~~~~r~ 392 (407)
..+..||++.+.....+| |+|.||||-.+.|-+++.++|.
T Consensus 221 p~n~~eAlre~~~D~~EGAD~lMVKPal~YLDIi~~~k~~~ 261 (320)
T cd04824 221 PGARGLALRAVERDVSEGADMIMVKPGTPYLDIVREAKDKH 261 (320)
T ss_pred CcCHHHHHHHHHhhHHhCCCEEEEcCCchHHHHHHHHHHhc
Confidence 356778888876666666 8999998766666666555543
No 435
>TIGR03334 IOR_beta indolepyruvate ferredoxin oxidoreductase, beta subunit. This model represents the beta subunit of indolepyruvate ferredoxin oxidoreductase, an alpha(2)/beta(2) tetramer, as found in Pyrococcus furiosus and Methanobacterium thermoautotrophicum. Cofactors for the tetramer include TPP, 4Fe4S, and 3Fe-4S. It shows considerable sequence similarity to subunits of several other ketoacid oxidoreductases.
Probab=20.86 E-value=5.5e+02 Score=22.15 Aligned_cols=89 Identities=8% Similarity=0.061 Sum_probs=49.7
Q ss_pred EEEecCCChH--hHHHHHHHHHHhcCCceeecccCCccchhhhhhcccCCCCCCCCcEEEEEecccccccC-CccccceE
Q 015421 46 LAVTGTNGKS--TVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIP-NKYFCPTV 122 (407)
Q Consensus 46 I~VTGTnGKT--Tt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~-~~~~~p~i 122 (407)
|-|+|.-|=+ |+..+|+..+...|+.+......|... +..+-++-+-+|. ...- ...-.||+
T Consensus 3 i~i~G~gGqGv~tag~ila~aa~~~G~~v~~~~~yg~~~-------------RGG~~~s~vris~--i~sp~~~~~~~Di 67 (189)
T TIGR03334 3 IVITGVGGQGIILASVIIGEAALKAGLPVRAAETHGMAQ-------------RGGSVINHIRIGE--VYGSMIPEGGADL 67 (189)
T ss_pred EEEEeECchHHHHHHHHHHHHHHHcCCCeEeeeccCccc-------------cCCeEEEEEEEcc--ccCCccCCCCCCE
Confidence 4455555544 667788888888998886555555421 2333233444443 1110 01146888
Q ss_pred EEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeCC
Q 015421 123 SVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164 (407)
Q Consensus 123 ~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~d 164 (407)
.|..+- +.+.+ .+..+++++.+|+|.+
T Consensus 68 lvald~-----------~~~~~----~~~~l~~~g~ii~n~~ 94 (189)
T TIGR03334 68 LLAFEP-----------LEALR----YLPYLSEGGEVILNTS 94 (189)
T ss_pred EEEeCH-----------HHHHH----HHHhcCCCcEEEEeCC
Confidence 887764 22222 2334567899999864
No 436
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=20.70 E-value=1e+02 Score=27.08 Aligned_cols=25 Identities=28% Similarity=0.538 Sum_probs=20.0
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+++|.|-| ||||...+|.-++.
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56789999987 69998888876654
No 437
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=20.66 E-value=94 Score=33.59 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=22.3
Q ss_pred EEEEecCCChHhHHHHHHHHHHhcCCcee
Q 015421 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 45 ~I~VTGTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
++|.+| .||||+...+..+++..|+++.
T Consensus 373 l~G~aG-TGKTtll~~i~~~~~~~g~~V~ 400 (744)
T TIGR02768 373 VVGRAG-TGKSTMLKAAREAWEAAGYRVI 400 (744)
T ss_pred EEecCC-CCHHHHHHHHHHHHHhCCCeEE
Confidence 444445 5899999999999999998763
No 438
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=20.57 E-value=1.2e+02 Score=27.42 Aligned_cols=42 Identities=24% Similarity=0.282 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCCCE-EEEcCCCCCcccccChhhhhH----HHHHHHhhhcccCC
Q 015421 357 KDAVNHARRMATNGDA-IVLSPGCASFDEFRNFEHRGM----VFQELAFFSKHDTK 407 (407)
Q Consensus 357 ~~a~~~a~~~~~~gd~-vL~~~G~~s~~~~~~~~~r~~----~~~~~~~~l~~~~~ 407 (407)
++.++...++.+.|+. +|+++|+- +||. .|.+.+..||+.|+
T Consensus 42 ~~l~k~~~el~kkGy~g~llSGGm~---------srg~VPl~kf~d~lK~lke~~~ 88 (275)
T COG1856 42 KSLLKRCMELEKKGYEGCLLSGGMD---------SRGKVPLWKFKDELKALKERTG 88 (275)
T ss_pred HHHHHHHHHHHhcCceeEEEeCCcC---------CCCCccHHHHHHHHHHHHHhhC
Confidence 6666666666677764 77887765 6775 67778888877753
No 439
>PRK13949 shikimate kinase; Provisional
Probab=20.55 E-value=1.1e+02 Score=26.16 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=17.8
Q ss_pred EEEEecC--CChHhHHHHHHHHHH
Q 015421 45 ILAVTGT--NGKSTVVTFVGQMLN 66 (407)
Q Consensus 45 ~I~VTGT--nGKTTt~~~l~~iL~ 66 (407)
.|.|.|. .||||+..+|+..|.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 4667664 589999999999885
No 440
>PF04693 DDE_Tnp_2: Archaeal putative transposase ISC1217; InterPro: IPR006783 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element. Transposases have been grouped into various families [, , ]. This family includes the putative transposase ISC1217 from archaebacteria. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=20.54 E-value=87 Score=29.53 Aligned_cols=44 Identities=23% Similarity=0.384 Sum_probs=29.5
Q ss_pred HHcCCCHHHHHHHhhcCCCCCCceeEEeeecC--C-EEEEEcCCCCCH
Q 015421 236 LDIGVDVEALNSTIEILRTPPHRMQIVHRDIQ--G-VTWVDDSKATNL 280 (407)
Q Consensus 236 ~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~--~-~~iidD~~a~np 280 (407)
..+|++-+.+.+.|.+.... +=++.+..-.. + +.||||++.|..
T Consensus 51 ~~~g~dY~~~Lk~Ld~la~~-~~~~~vk~~v~~~~v~vIiDDt~dhk~ 97 (327)
T PF04693_consen 51 QTFGMDYENLLKNLDKLANA-DLLEAVKKVVKGHPVVVIIDDTVDHKL 97 (327)
T ss_pred HHhCccHHHHHHHhhhhhcc-CchhhhhhhccCCceEEEEecccchhh
Confidence 44689999999988887633 55665532122 3 688899877764
No 441
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=20.51 E-value=1e+02 Score=27.48 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=20.4
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+++|+|-| ||||...+|+-++.
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 56799999997 79998888886654
No 442
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=20.46 E-value=1e+02 Score=26.85 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=19.9
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL 65 (407)
+..+++|+|.| ||||...+|+-++
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999997 8999888887665
No 443
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=20.43 E-value=84 Score=29.24 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=21.2
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+++|.|-| ||||...+|.-++.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (279)
T PRK13650 32 QGEWLSIIGHNGSGKSTTVRLIDGLLE 58 (279)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56799999997 89999999987764
No 444
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=20.41 E-value=68 Score=29.57 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=22.4
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHHh
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~~ 67 (407)
...+.|.-|-| |||||-+||-.+|+.
T Consensus 27 ~G~i~GllG~NGAGKTTtfRmILglle~ 54 (300)
T COG4152 27 PGEIFGLLGPNGAGKTTTFRMILGLLEP 54 (300)
T ss_pred CCeEEEeecCCCCCccchHHHHhccCCc
Confidence 46788999887 599999999999986
No 445
>PRK13764 ATPase; Provisional
Probab=20.41 E-value=1.6e+02 Score=30.84 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=23.0
Q ss_pred CcEEEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~ 72 (407)
...|.|+|. .||||+...|...+...+..+
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV 288 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIV 288 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEE
Confidence 445788874 599999998888887777655
No 446
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=20.38 E-value=1e+02 Score=27.13 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=19.8
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+++|+|-| ||||...+|.-++.
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56799999987 69998888876553
No 447
>PLN02200 adenylate kinase family protein
Probab=20.33 E-value=1.4e+02 Score=27.12 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=22.3
Q ss_pred CcEEEEecC--CChHhHHHHHHHHHHhcCCceeecc
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~~~g 76 (407)
..+|.|+|. .||||.+..|+.-+ |+.+...|
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~---g~~his~g 75 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETF---GFKHLSAG 75 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh---CCeEEEcc
Confidence 457888887 58999999987654 55554444
No 448
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=20.33 E-value=1.2e+02 Score=32.94 Aligned_cols=31 Identities=26% Similarity=0.569 Sum_probs=23.8
Q ss_pred CCcEEEEecCC--ChHhHHHHHH--HHHHhcCCce
Q 015421 42 SIKILAVTGTN--GKSTVVTFVG--QMLNHLGIEA 72 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~--~iL~~~g~~~ 72 (407)
+.+++.|||.| ||||+...+. .+|.+.|..+
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~v 360 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPI 360 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCc
Confidence 45689999987 8999887775 5577888654
No 449
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.28 E-value=83 Score=28.58 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=20.3
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+++|+|.| ||||...+|+-++.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14251 29 EKELTALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccc
Confidence 45789999997 79998888887664
No 450
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=20.24 E-value=1e+02 Score=26.91 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=19.7
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+++|.|.| ||||...+|..++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLSP 51 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56799999987 69998888875553
No 451
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=20.21 E-value=1e+02 Score=27.05 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=20.0
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+++|.|-| ||||...+|+-++.
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56789999987 79998888876653
No 452
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=20.19 E-value=1.1e+02 Score=28.55 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=20.2
Q ss_pred EEEEe---cCCChHhHHHHHHHHHHhcC
Q 015421 45 ILAVT---GTNGKSTVVTFVGQMLNHLG 69 (407)
Q Consensus 45 ~I~VT---GTnGKTTt~~~l~~iL~~~g 69 (407)
.|+|+ |-.||||.+.-|+.+|....
T Consensus 3 ~vAV~sGKGGtGKTTva~~la~~l~~~~ 30 (284)
T COG1149 3 QVAVASGKGGTGKTTVAANLAVLLGDKY 30 (284)
T ss_pred EEEEeecCCCCChhhHHHHHHHHhcccc
Confidence 46666 67799999999999998754
No 453
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=20.17 E-value=57 Score=30.83 Aligned_cols=39 Identities=26% Similarity=0.426 Sum_probs=27.2
Q ss_pred cccHHHHHHHHHHhcCCC-CEEEEcCCCCCcccccChhhh
Q 015421 353 VANMKDAVNHARRMATNG-DAIVLSPGCASFDEFRNFEHR 391 (407)
Q Consensus 353 ~~~~~~a~~~a~~~~~~g-d~vL~~~G~~s~~~~~~~~~r 391 (407)
..+..||+..+.....+| |+|.||||-.+.|-+++..++
T Consensus 216 pan~~eAlre~~~D~~EGAD~lMVKPal~YLDIi~~~k~~ 255 (314)
T cd00384 216 PANRREALREVELDIEEGADILMVKPALAYLDIIRDVRER 255 (314)
T ss_pred CCCHHHHHHHHHhhHHhCCCEEEEcCCchHHHHHHHHHHh
Confidence 356778888877666666 899999876666665555444
No 454
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=20.16 E-value=3.1e+02 Score=23.96 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=15.9
Q ss_pred CCCcEEEEecCC--ChHhHHHHHHHH
Q 015421 41 RSIKILAVTGTN--GKSTVVTFVGQM 64 (407)
Q Consensus 41 ~~~~~I~VTGTn--GKTTt~~~l~~i 64 (407)
...++|+++|.. ||||+..-+.+-
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999975 566654444433
No 455
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=20.15 E-value=2.5e+02 Score=25.95 Aligned_cols=52 Identities=15% Similarity=0.240 Sum_probs=30.3
Q ss_pred CCChHHHHHHHHhCCCCc-ccccc-ccHHHHHHHHHHhcCCCCEEEEcCCCCCc
Q 015421 331 GYSGVLIWKTLVNNGLSI-PCFAV-ANMKDAVNHARRMATNGDAIVLSPGCASF 382 (407)
Q Consensus 331 g~~~~~~~~~l~~~~~~~-~~~~~-~~~~~a~~~a~~~~~~gd~vL~~~G~~s~ 382 (407)
..++..+.+.|...|+.. ....+ ++.++..+.+....+.-|+|++++|-|=-
T Consensus 20 dtNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGGLGPT 73 (255)
T COG1058 20 DTNAAFLADELTELGVDLARITTVGDNPDRIVEALREASERADVVITTGGLGPT 73 (255)
T ss_pred cchHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCCcCCC
Confidence 345677888887777642 22233 44444444444444557888887765543
No 456
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.13 E-value=82 Score=28.23 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=20.8
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+++|+|.| ||||...+|.-++.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 52 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLFRFYD 52 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 56799999997 79999999987664
No 457
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=20.08 E-value=1.2e+02 Score=27.20 Aligned_cols=28 Identities=36% Similarity=0.700 Sum_probs=21.3
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHH--HHhcC
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQM--LNHLG 69 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~i--L~~~g 69 (407)
+..++.+||.| ||||..+++..+ |.+.|
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~g 60 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVLMAQIG 60 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHHHHhC
Confidence 45689999986 899988887754 45555
No 458
>PRK13976 thymidylate kinase; Provisional
Probab=20.00 E-value=1e+02 Score=27.35 Aligned_cols=18 Identities=28% Similarity=0.602 Sum_probs=16.5
Q ss_pred CChHhHHHHHHHHHHhc-C
Q 015421 52 NGKSTVVTFVGQMLNHL-G 69 (407)
Q Consensus 52 nGKTTt~~~l~~iL~~~-g 69 (407)
.||||.+.+|+.-|+.. |
T Consensus 11 sGKsTq~~~L~~~L~~~~g 29 (209)
T PRK13976 11 SGKTTQSRLLAEYLSDIYG 29 (209)
T ss_pred CCHHHHHHHHHHHHHHhcC
Confidence 59999999999999986 5
Done!