Query 015421
Match_columns 407
No_of_seqs 229 out of 1210
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 12:19:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015421.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015421hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lk7_A UDP-N-acetylmuramoylala 100.0 1.5E-69 5.2E-74 540.9 44.1 376 3-404 74-450 (451)
2 2x5o_A UDP-N-acetylmuramoylala 100.0 2E-64 6.9E-69 502.5 39.6 367 3-403 66-437 (439)
3 4hv4_A UDP-N-acetylmuramate--L 100.0 5E-58 1.7E-62 462.0 32.8 360 3-385 83-474 (494)
4 3hn7_A UDP-N-acetylmuramate-L- 100.0 2.9E-57 1E-61 459.3 38.1 372 3-386 82-510 (524)
5 2am1_A SP protein, UDP-N-acety 100.0 1.7E-58 5.9E-63 461.9 24.6 364 4-403 65-453 (454)
6 1gg4_A UDP-N-acetylmuramoylala 100.0 6.7E-58 2.3E-62 456.9 24.6 364 4-404 64-448 (452)
7 1p3d_A UDP-N-acetylmuramate--a 100.0 1.2E-55 4.1E-60 443.6 32.5 363 3-387 79-467 (475)
8 2f00_A UDP-N-acetylmuramate--L 100.0 4.7E-55 1.6E-59 440.8 29.4 362 3-386 80-472 (491)
9 1j6u_A UDP-N-acetylmuramate-al 100.0 1.1E-52 3.8E-57 420.7 33.4 346 3-385 73-446 (469)
10 1e8c_A UDP-N-acetylmuramoylala 100.0 4.8E-52 1.6E-56 419.5 30.2 350 41-405 106-496 (498)
11 2wtz_A UDP-N-acetylmuramoyl-L- 100.0 3.7E-51 1.3E-55 415.8 31.3 349 42-403 145-532 (535)
12 3nrs_A Dihydrofolate:folylpoly 100.0 2.8E-47 9.7E-52 378.2 28.9 329 28-388 34-431 (437)
13 1jbw_A Folylpolyglutamate synt 100.0 1E-47 3.4E-52 381.2 24.8 330 28-386 21-417 (428)
14 2vos_A Folylpolyglutamate synt 100.0 5E-47 1.7E-51 380.7 26.9 340 26-388 44-478 (487)
15 1o5z_A Folylpolyglutamate synt 100.0 5.6E-47 1.9E-51 376.6 25.6 316 41-389 50-428 (442)
16 1w78_A FOLC bifunctional prote 100.0 7.1E-46 2.4E-50 367.4 28.4 310 41-386 47-408 (422)
17 3eag_A UDP-N-acetylmuramate:L- 100.0 2.3E-44 7.7E-49 344.4 25.6 246 3-256 68-325 (326)
18 3mvn_A UDP-N-acetylmuramate:L- 99.8 1.8E-18 6E-23 148.1 13.1 138 242-386 11-154 (163)
19 2g0t_A Conserved hypothetical 94.2 0.3 1E-05 45.9 10.7 107 42-148 168-309 (350)
20 1pjq_A CYSG, siroheme synthase 94.0 0.019 6.6E-07 56.5 2.1 64 4-68 75-146 (457)
21 3fwy_A Light-independent proto 92.4 0.12 4.3E-06 47.9 5.0 34 41-74 46-81 (314)
22 3fgn_A Dethiobiotin synthetase 91.7 0.18 6.3E-06 45.1 5.1 39 35-73 18-59 (251)
23 4dzz_A Plasmid partitioning pr 90.6 0.26 8.8E-06 42.1 4.7 31 43-73 1-34 (206)
24 3of5_A Dethiobiotin synthetase 90.6 0.28 9.5E-06 43.2 5.0 33 41-73 2-37 (228)
25 1xjc_A MOBB protein homolog; s 90.4 0.31 1.1E-05 40.8 4.9 34 41-74 2-37 (169)
26 1byi_A Dethiobiotin synthase; 89.7 0.3 1E-05 42.4 4.5 31 44-74 2-35 (224)
27 2obn_A Hypothetical protein; s 89.0 0.4 1.4E-05 45.0 4.9 143 5-149 106-289 (349)
28 3ea0_A ATPase, para family; al 88.0 0.42 1.4E-05 42.0 4.2 32 41-72 2-37 (245)
29 3bfv_A CAPA1, CAPB2, membrane 87.7 0.78 2.7E-05 41.5 5.9 33 41-73 80-115 (271)
30 3cio_A ETK, tyrosine-protein k 87.3 0.92 3.2E-05 41.6 6.2 33 41-73 102-137 (299)
31 3la6_A Tyrosine-protein kinase 87.2 0.88 3E-05 41.5 6.0 32 41-72 90-124 (286)
32 2ph1_A Nucleotide-binding prot 87.2 1 3.4E-05 40.3 6.3 42 31-73 7-51 (262)
33 3qxc_A Dethiobiotin synthetase 86.9 0.69 2.4E-05 41.1 4.9 33 41-73 19-54 (242)
34 1wcv_1 SOJ, segregation protei 85.7 0.69 2.3E-05 41.2 4.3 33 41-73 4-39 (257)
35 3end_A Light-independent proto 85.3 0.87 3E-05 41.7 5.0 32 41-72 39-72 (307)
36 1g3q_A MIND ATPase, cell divis 85.3 0.89 3.1E-05 39.6 4.9 30 44-73 3-35 (237)
37 3q9l_A Septum site-determining 84.7 0.96 3.3E-05 40.0 4.8 29 44-72 3-34 (260)
38 1cp2_A CP2, nitrogenase iron p 84.6 0.83 2.8E-05 40.8 4.4 30 44-73 2-33 (269)
39 1zu4_A FTSY; GTPase, signal re 84.5 1.1 3.7E-05 41.6 5.2 32 42-73 104-137 (320)
40 2afh_E Nitrogenase iron protei 84.4 1 3.5E-05 40.8 5.0 31 43-73 2-34 (289)
41 3k9g_A PF-32 protein; ssgcid, 84.2 0.89 3E-05 40.6 4.4 31 41-72 25-58 (267)
42 2xj4_A MIPZ; replication, cell 84.0 0.9 3.1E-05 41.2 4.4 31 43-73 4-37 (286)
43 1vma_A Cell division protein F 83.6 1.2 4.2E-05 41.0 5.1 32 42-73 103-136 (306)
44 1rz3_A Hypothetical protein rb 82.9 2 6.9E-05 36.5 6.0 32 41-72 20-53 (201)
45 3cwq_A Para family chromosome 81.7 1.4 4.7E-05 37.9 4.5 28 45-73 2-32 (209)
46 1hyq_A MIND, cell division inh 81.5 1.5 5.2E-05 38.9 4.8 30 44-73 3-35 (263)
47 3fkq_A NTRC-like two-domain pr 81.0 1.5 5E-05 41.6 4.7 33 41-73 141-176 (373)
48 2oze_A ORF delta'; para, walke 80.7 0.72 2.5E-05 42.0 2.4 24 49-72 45-68 (298)
49 3ug7_A Arsenical pump-driving 79.6 1.9 6.4E-05 40.5 4.9 34 41-74 23-59 (349)
50 3pg5_A Uncharacterized protein 79.4 0.89 3E-05 42.9 2.6 31 43-73 1-34 (361)
51 2px0_A Flagellar biosynthesis 77.8 2.5 8.6E-05 38.6 5.1 32 42-73 104-138 (296)
52 1np6_A Molybdopterin-guanine d 77.6 2.9 9.8E-05 34.9 5.0 32 42-73 5-38 (174)
53 1a7j_A Phosphoribulokinase; tr 77.2 1.7 5.9E-05 39.6 3.8 29 42-70 4-34 (290)
54 2z0h_A DTMP kinase, thymidylat 76.6 2.4 8E-05 35.5 4.3 29 45-73 2-32 (197)
55 3zq6_A Putative arsenical pump 76.4 2.3 7.7E-05 39.4 4.4 31 44-74 14-47 (324)
56 3kl4_A SRP54, signal recogniti 76.3 2.6 8.9E-05 40.8 4.9 32 43-74 97-130 (433)
57 3c8u_A Fructokinase; YP_612366 76.3 3.6 0.00012 35.0 5.5 30 41-70 20-51 (208)
58 1kyq_A Met8P, siroheme biosynt 75.0 0.78 2.7E-05 41.5 0.8 64 3-67 108-183 (274)
59 3ez2_A Plasmid partition prote 74.8 3.2 0.00011 39.5 5.2 26 42-67 107-135 (398)
60 3b9q_A Chloroplast SRP recepto 74.7 3.4 0.00012 37.8 5.1 32 42-73 99-132 (302)
61 3ez9_A Para; DNA binding, wing 74.6 2 6.7E-05 41.1 3.6 32 41-72 109-149 (403)
62 2woo_A ATPase GET3; tail-ancho 74.3 2.8 9.5E-05 38.9 4.4 32 43-74 18-52 (329)
63 1nn5_A Similar to deoxythymidy 74.2 3.2 0.00011 35.2 4.6 31 42-72 8-40 (215)
64 2pez_A Bifunctional 3'-phospho 73.7 3.6 0.00012 33.9 4.7 31 42-72 4-36 (179)
65 2jeo_A Uridine-cytidine kinase 73.6 2.7 9.1E-05 37.0 3.9 24 42-65 24-49 (245)
66 1nks_A Adenylate kinase; therm 73.4 3 0.0001 34.6 4.1 29 44-72 2-32 (194)
67 3asz_A Uridine kinase; cytidin 73.0 2.5 8.5E-05 36.0 3.5 25 42-66 5-31 (211)
68 3uie_A Adenylyl-sulfate kinase 72.7 5.4 0.00018 33.7 5.6 31 41-71 23-55 (200)
69 2f1r_A Molybdopterin-guanine d 72.4 3.3 0.00011 34.4 4.0 31 43-73 2-34 (171)
70 3e70_C DPA, signal recognition 72.2 4.5 0.00015 37.5 5.3 33 42-74 128-162 (328)
71 2wwf_A Thymidilate kinase, put 72.1 3.6 0.00012 34.9 4.4 31 42-72 9-41 (212)
72 2pbr_A DTMP kinase, thymidylat 71.7 3.8 0.00013 34.0 4.4 29 45-73 2-32 (195)
73 2og2_A Putative signal recogni 71.3 4.5 0.00016 38.0 5.1 32 42-73 156-189 (359)
74 3dm5_A SRP54, signal recogniti 71.3 4.1 0.00014 39.5 4.9 31 43-73 100-132 (443)
75 1odf_A YGR205W, hypothetical 3 69.6 4.3 0.00015 36.9 4.4 28 41-68 29-58 (290)
76 2vo1_A CTP synthase 1; pyrimid 69.1 5.2 0.00018 35.8 4.6 33 41-73 21-57 (295)
77 2i3b_A HCR-ntpase, human cance 68.4 3.5 0.00012 34.8 3.4 25 45-69 3-29 (189)
78 2if2_A Dephospho-COA kinase; a 68.4 2.7 9.3E-05 35.5 2.7 25 44-72 2-28 (204)
79 2yhs_A FTSY, cell division pro 67.9 5.9 0.0002 39.0 5.2 33 42-74 292-326 (503)
80 1rj9_A FTSY, signal recognitio 67.3 6.6 0.00023 35.9 5.2 32 42-73 101-134 (304)
81 2yvu_A Probable adenylyl-sulfa 66.5 6.8 0.00023 32.4 4.8 31 42-72 12-44 (186)
82 2woj_A ATPase GET3; tail-ancho 66.4 4.3 0.00015 38.1 3.9 31 43-73 17-52 (354)
83 1zuh_A Shikimate kinase; alpha 66.1 4.4 0.00015 33.0 3.5 25 42-66 6-32 (168)
84 3aez_A Pantothenate kinase; tr 66.1 4.8 0.00016 37.0 4.0 27 41-67 88-116 (312)
85 3tr0_A Guanylate kinase, GMP k 65.3 4.1 0.00014 34.3 3.2 24 42-65 6-31 (205)
86 3kb2_A SPBC2 prophage-derived 64.3 5 0.00017 32.5 3.5 23 44-66 2-26 (173)
87 1sq5_A Pantothenate kinase; P- 64.0 5 0.00017 36.7 3.8 26 41-66 78-105 (308)
88 3iqw_A Tail-anchored protein t 63.7 5 0.00017 37.3 3.7 25 50-74 25-49 (334)
89 3ake_A Cytidylate kinase; CMP 63.3 5.2 0.00018 33.6 3.5 23 44-66 3-27 (208)
90 2xxa_A Signal recognition part 63.2 8.2 0.00028 37.3 5.2 32 42-73 99-133 (433)
91 1jjv_A Dephospho-COA kinase; P 63.2 4.5 0.00015 34.2 3.1 20 44-63 3-24 (206)
92 1ls1_A Signal recognition part 62.9 8.4 0.00029 35.0 5.0 32 42-73 97-130 (295)
93 3tqc_A Pantothenate kinase; bi 62.6 6.9 0.00024 36.2 4.4 26 42-67 91-118 (321)
94 2grj_A Dephospho-COA kinase; T 62.6 5.5 0.00019 33.7 3.5 28 42-72 11-40 (192)
95 1uj2_A Uridine-cytidine kinase 62.0 5 0.00017 35.4 3.3 26 42-67 21-48 (252)
96 3kjh_A CO dehydrogenase/acetyl 61.8 2.8 9.6E-05 36.5 1.5 27 46-72 3-31 (254)
97 1cke_A CK, MSSA, protein (cyti 61.7 6.6 0.00022 33.6 3.9 23 43-65 5-29 (227)
98 4eun_A Thermoresistant glucoki 60.3 6.9 0.00024 32.9 3.8 24 42-65 28-53 (200)
99 3io3_A DEHA2D07832P; chaperone 60.2 9.3 0.00032 35.7 4.9 33 42-74 17-53 (348)
100 1m7g_A Adenylylsulfate kinase; 60.2 13 0.00044 31.5 5.5 32 41-72 23-57 (211)
101 1ye8_A Protein THEP1, hypothet 60.1 6.6 0.00022 32.7 3.5 22 45-66 2-25 (178)
102 3pzx_A Formate--tetrahydrofola 58.8 11 0.00038 36.8 5.1 60 15-74 17-94 (557)
103 2c5m_A CTP synthase; cytidine 58.6 10 0.00035 33.6 4.4 32 41-72 21-56 (294)
104 1j8m_F SRP54, signal recogniti 58.3 9.9 0.00034 34.6 4.6 31 43-73 98-130 (297)
105 3lnc_A Guanylate kinase, GMP k 57.9 5.4 0.00018 34.5 2.7 25 42-66 26-53 (231)
106 3a00_A Guanylate kinase, GMP k 57.1 4.9 0.00017 33.5 2.2 24 44-67 2-27 (186)
107 2p67_A LAO/AO transport system 57.1 11 0.00038 34.9 4.9 33 41-73 54-88 (341)
108 1uf9_A TT1252 protein; P-loop, 56.3 7.6 0.00026 32.4 3.3 29 41-73 6-36 (203)
109 1kht_A Adenylate kinase; phosp 56.3 11 0.00038 31.0 4.3 27 44-70 4-32 (192)
110 2j37_W Signal recognition part 55.6 12 0.00041 36.9 5.0 32 42-73 100-133 (504)
111 1e6c_A Shikimate kinase; phosp 55.5 7.4 0.00025 31.6 3.0 23 44-66 3-27 (173)
112 1kag_A SKI, shikimate kinase I 55.3 6.5 0.00022 32.0 2.7 23 44-66 5-29 (173)
113 2j41_A Guanylate kinase; GMP, 55.2 6.4 0.00022 33.1 2.6 24 42-65 5-30 (207)
114 2eyu_A Twitching motility prot 54.2 14 0.00046 32.9 4.7 28 41-68 23-52 (261)
115 2plr_A DTMP kinase, probable t 54.1 11 0.00038 31.6 4.0 27 43-69 4-32 (213)
116 2qm8_A GTPase/ATPase; G protei 53.4 15 0.00053 33.9 5.2 33 41-73 53-87 (337)
117 3a4m_A L-seryl-tRNA(SEC) kinas 52.9 14 0.00048 32.6 4.6 31 42-72 3-35 (260)
118 3ec2_A DNA replication protein 52.4 28 0.00096 28.3 6.2 31 42-72 37-70 (180)
119 2ffh_A Protein (FFH); SRP54, s 52.2 15 0.00051 35.4 4.9 32 43-74 98-131 (425)
120 1qf9_A UMP/CMP kinase, protein 51.7 12 0.00041 30.8 3.8 23 43-65 6-30 (194)
121 3tau_A Guanylate kinase, GMP k 51.3 11 0.00038 31.9 3.6 26 41-66 6-33 (208)
122 2pt5_A Shikimate kinase, SK; a 50.9 11 0.00039 30.3 3.4 22 45-66 2-25 (168)
123 3p32_A Probable GTPase RV1496/ 50.9 24 0.00083 32.7 6.2 33 41-73 77-111 (355)
124 1y63_A LMAJ004144AAA protein; 50.8 12 0.00042 30.9 3.7 23 42-64 9-33 (184)
125 1xx6_A Thymidine kinase; NESG, 50.7 22 0.00075 29.9 5.3 32 42-73 7-40 (191)
126 1knq_A Gluconate kinase; ALFA/ 50.7 14 0.00047 30.1 4.0 24 42-65 7-32 (175)
127 2iyv_A Shikimate kinase, SK; t 50.3 9.2 0.00032 31.5 2.8 22 44-65 3-26 (184)
128 2qt1_A Nicotinamide riboside k 50.3 10 0.00035 32.0 3.1 24 42-65 20-45 (207)
129 1ihu_A Arsenical pump-driving 49.7 16 0.00053 36.7 4.9 32 42-73 7-40 (589)
130 4i1u_A Dephospho-COA kinase; s 49.4 13 0.00044 32.0 3.6 27 42-72 8-36 (210)
131 1q3t_A Cytidylate kinase; nucl 49.4 14 0.00047 32.0 3.9 30 42-74 15-46 (236)
132 1yrb_A ATP(GTP)binding protein 49.3 17 0.0006 31.6 4.7 30 42-72 13-44 (262)
133 3t61_A Gluconokinase; PSI-biol 49.1 12 0.0004 31.4 3.4 24 42-65 17-42 (202)
134 2c95_A Adenylate kinase 1; tra 49.0 13 0.00045 30.7 3.6 24 42-65 8-33 (196)
135 3jvv_A Twitching mobility prot 48.4 13 0.00043 34.9 3.7 31 42-72 122-155 (356)
136 3hjn_A DTMP kinase, thymidylat 48.3 11 0.00038 31.9 3.0 22 52-73 11-32 (197)
137 3igf_A ALL4481 protein; two-do 47.6 9.2 0.00032 36.1 2.6 28 50-77 11-38 (374)
138 3vaa_A Shikimate kinase, SK; s 47.0 15 0.00052 30.7 3.7 24 42-65 24-49 (199)
139 4ehx_A Tetraacyldisaccharide 4 46.8 13 0.00044 34.2 3.4 28 42-69 35-66 (315)
140 1vht_A Dephospho-COA kinase; s 46.4 14 0.00049 31.3 3.5 26 43-72 4-31 (218)
141 4edh_A DTMP kinase, thymidylat 46.2 24 0.00083 30.2 4.9 31 43-73 6-38 (213)
142 1znw_A Guanylate kinase, GMP k 45.8 13 0.00044 31.4 3.1 26 41-66 18-45 (207)
143 1zak_A Adenylate kinase; ATP:A 45.8 9.7 0.00033 32.6 2.3 21 45-66 10-30 (222)
144 4tmk_A Protein (thymidylate ki 45.6 21 0.00072 30.6 4.4 28 43-70 3-32 (213)
145 2w0m_A SSO2452; RECA, SSPF, un 45.5 24 0.0008 29.9 4.8 31 42-72 22-54 (235)
146 4eaq_A DTMP kinase, thymidylat 45.3 18 0.0006 31.3 3.9 31 42-73 25-57 (229)
147 1lvg_A Guanylate kinase, GMP k 45.2 13 0.00043 31.3 2.9 24 43-66 4-29 (198)
148 2f6r_A COA synthase, bifunctio 45.1 13 0.00046 33.3 3.2 27 42-72 74-102 (281)
149 4e22_A Cytidylate kinase; P-lo 44.2 15 0.00052 32.2 3.4 25 41-65 25-51 (252)
150 3do6_A Formate--tetrahydrofola 43.4 25 0.00084 34.2 4.7 32 41-72 41-78 (543)
151 1p9r_A General secretion pathw 43.2 25 0.00086 33.6 5.0 27 41-67 165-193 (418)
152 2vli_A Antibiotic resistance p 43.1 11 0.00038 30.8 2.2 24 42-65 4-29 (183)
153 2b8t_A Thymidine kinase; deoxy 42.4 31 0.0011 29.8 5.0 33 41-73 10-44 (223)
154 1kgd_A CASK, peripheral plasma 42.2 17 0.00057 30.0 3.2 25 42-66 4-30 (180)
155 2cdn_A Adenylate kinase; phosp 41.7 22 0.00076 29.6 4.0 23 43-65 20-44 (201)
156 2v3c_C SRP54, signal recogniti 40.9 17 0.00058 35.0 3.3 30 44-73 100-131 (432)
157 2v54_A DTMP kinase, thymidylat 40.8 20 0.00069 29.7 3.6 23 43-65 4-28 (204)
158 2www_A Methylmalonic aciduria 40.8 32 0.0011 31.9 5.2 32 42-73 73-106 (349)
159 3lw7_A Adenylate kinase relate 40.6 22 0.00075 28.4 3.7 26 44-73 2-29 (179)
160 2ewv_A Twitching motility prot 40.4 27 0.00093 32.7 4.7 28 41-68 134-163 (372)
161 2bbw_A Adenylate kinase 4, AK4 40.2 22 0.00074 30.9 3.8 24 42-65 26-51 (246)
162 3ld9_A DTMP kinase, thymidylat 39.7 26 0.0009 30.3 4.1 32 41-72 19-53 (223)
163 3lv8_A DTMP kinase, thymidylat 39.7 33 0.0011 29.9 4.8 29 43-71 27-57 (236)
164 1ukz_A Uridylate kinase; trans 39.7 20 0.00067 29.9 3.3 25 41-65 13-39 (203)
165 4a0g_A Adenosylmethionine-8-am 38.9 21 0.00073 37.5 4.0 31 42-72 33-71 (831)
166 3trf_A Shikimate kinase, SK; a 38.9 24 0.0008 28.9 3.6 23 43-65 5-29 (185)
167 2bdt_A BH3686; alpha-beta prot 38.8 20 0.00069 29.5 3.2 20 44-63 3-24 (189)
168 1gtv_A TMK, thymidylate kinase 38.5 10 0.00035 32.0 1.2 28 45-72 2-31 (214)
169 1htw_A HI0065; nucleotide-bind 38.5 21 0.00072 28.9 3.1 25 41-65 31-57 (158)
170 2jaq_A Deoxyguanosine kinase; 38.0 23 0.0008 29.2 3.5 22 45-66 2-25 (205)
171 1zp6_A Hypothetical protein AT 37.9 21 0.00071 29.4 3.1 23 42-64 8-32 (191)
172 1tev_A UMP-CMP kinase; ploop, 37.8 25 0.00085 28.8 3.6 23 43-65 3-27 (196)
173 2orw_A Thymidine kinase; TMTK, 37.8 37 0.0013 28.1 4.6 30 43-72 3-34 (184)
174 1qhx_A CPT, protein (chloramph 37.4 21 0.00072 28.9 3.0 23 44-66 4-28 (178)
175 3nva_A CTP synthase; rossman f 37.3 32 0.0011 33.9 4.7 31 43-73 3-37 (535)
176 2kjq_A DNAA-related protein; s 36.9 33 0.0011 27.3 4.1 30 43-72 36-67 (149)
177 3iij_A Coilin-interacting nucl 36.7 24 0.00083 28.7 3.3 24 42-65 10-35 (180)
178 1aky_A Adenylate kinase; ATP:A 36.7 27 0.00093 29.6 3.7 25 42-66 3-29 (220)
179 3sho_A Transcriptional regulat 36.7 73 0.0025 25.9 6.4 20 281-300 27-46 (187)
180 1dek_A Deoxynucleoside monopho 36.5 23 0.00078 31.1 3.2 21 44-64 2-24 (241)
181 2bwj_A Adenylate kinase 5; pho 36.3 25 0.00087 28.9 3.4 24 43-66 12-37 (199)
182 2rhm_A Putative kinase; P-loop 36.1 28 0.00095 28.5 3.6 24 42-65 4-29 (193)
183 3v9p_A DTMP kinase, thymidylat 35.9 33 0.0011 29.7 4.2 31 42-72 24-60 (227)
184 3cm0_A Adenylate kinase; ATP-b 35.6 26 0.00089 28.6 3.4 23 43-65 4-28 (186)
185 1via_A Shikimate kinase; struc 35.1 23 0.00078 28.7 2.9 23 44-66 5-29 (175)
186 3kta_A Chromosome segregation 35.1 21 0.00073 29.1 2.7 24 44-67 27-52 (182)
187 1cr0_A DNA primase/helicase; R 34.8 44 0.0015 29.8 5.0 32 41-72 33-67 (296)
188 2r8r_A Sensor protein; KDPD, P 34.7 32 0.0011 29.9 3.8 25 49-73 14-38 (228)
189 1x6v_B Bifunctional 3'-phospho 33.7 46 0.0016 33.7 5.3 32 42-73 51-84 (630)
190 2gks_A Bifunctional SAT/APS ki 33.6 36 0.0012 33.8 4.5 31 42-72 371-403 (546)
191 2j9r_A Thymidine kinase; TK1, 33.4 58 0.002 27.9 5.2 33 41-73 26-60 (214)
192 2fp4_B Succinyl-COA ligase [GD 31.9 1.7E+02 0.0059 27.5 8.8 92 270-368 292-393 (395)
193 2nu8_B SCS-beta, succinyl-COA 31.9 2.3E+02 0.0079 26.5 9.6 93 269-368 284-386 (388)
194 1pgy_A SWA2P; UBA, ubiquitin, 31.6 4.3 0.00015 25.1 -1.6 27 380-406 19-45 (47)
195 3oz7_A Phosphoglycerate kinase 30.9 1.8E+02 0.0063 27.5 8.5 47 291-343 205-251 (417)
196 3hdt_A Putative kinase; struct 29.8 40 0.0014 29.0 3.6 25 42-66 13-39 (223)
197 1z6g_A Guanylate kinase; struc 29.7 27 0.00092 29.8 2.5 24 42-65 22-47 (218)
198 3lfu_A DNA helicase II; SF1 he 29.3 30 0.001 34.8 3.2 28 42-70 24-52 (647)
199 3nwj_A ATSK2; P loop, shikimat 28.6 36 0.0012 29.9 3.2 24 43-66 48-73 (250)
200 1s96_A Guanylate kinase, GMP k 28.4 36 0.0012 29.2 3.0 25 42-66 15-41 (219)
201 3r20_A Cytidylate kinase; stru 27.8 45 0.0015 29.0 3.6 32 43-77 9-42 (233)
202 3tlx_A Adenylate kinase 2; str 27.8 47 0.0016 28.7 3.8 29 42-73 28-58 (243)
203 1nij_A Hypothetical protein YJ 27.5 30 0.001 31.5 2.6 23 42-64 3-27 (318)
204 2h92_A Cytidylate kinase; ross 27.2 32 0.0011 29.0 2.5 22 44-65 4-27 (219)
205 1ak2_A Adenylate kinase isoenz 27.1 51 0.0018 28.1 3.9 25 42-66 15-41 (233)
206 2olj_A Amino acid ABC transpor 27.1 35 0.0012 30.2 2.9 25 42-66 49-75 (263)
207 2v9p_A Replication protein E1; 27.0 53 0.0018 29.8 4.1 25 41-65 124-150 (305)
208 2oap_1 GSPE-2, type II secreti 26.8 22 0.00075 35.0 1.5 25 42-66 259-285 (511)
209 3fb4_A Adenylate kinase; psych 26.4 46 0.0016 27.8 3.4 21 45-65 2-24 (216)
210 2ehv_A Hypothetical protein PH 26.3 76 0.0026 26.9 4.9 22 42-63 29-52 (251)
211 3be4_A Adenylate kinase; malar 26.2 43 0.0015 28.3 3.2 22 44-65 6-29 (217)
212 2wsm_A Hydrogenase expression/ 26.1 62 0.0021 27.0 4.2 27 42-68 29-57 (221)
213 1m8p_A Sulfate adenylyltransfe 26.1 59 0.002 32.5 4.6 31 42-72 395-428 (573)
214 1tue_A Replication protein E1; 25.9 61 0.0021 27.7 4.0 47 19-66 32-83 (212)
215 1b0u_A Histidine permease; ABC 25.1 40 0.0014 29.7 2.9 26 41-66 30-57 (262)
216 2zu0_C Probable ATP-dependent 24.7 49 0.0017 29.2 3.4 24 42-65 45-70 (267)
217 3b85_A Phosphate starvation-in 24.7 48 0.0016 28.1 3.2 24 42-66 21-46 (208)
218 2pcj_A ABC transporter, lipopr 24.6 37 0.0013 29.1 2.5 24 42-65 29-54 (224)
219 3upu_A ATP-dependent DNA helic 24.6 35 0.0012 32.8 2.6 26 45-70 47-74 (459)
220 2onk_A Molybdate/tungstate ABC 24.5 49 0.0017 28.8 3.2 25 41-66 23-49 (240)
221 2yz2_A Putative ABC transporte 24.3 43 0.0015 29.6 2.9 24 42-65 32-57 (266)
222 1g8f_A Sulfate adenylyltransfe 24.2 48 0.0017 32.6 3.4 51 17-67 360-421 (511)
223 1ly1_A Polynucleotide kinase; 23.9 51 0.0017 26.4 3.1 20 44-63 3-24 (181)
224 1vpl_A ABC transporter, ATP-bi 23.5 46 0.0016 29.3 2.9 25 42-66 40-66 (256)
225 16pk_A PGK, 3-phosphoglycerate 23.2 3.1E+02 0.011 25.9 8.6 45 291-341 203-247 (415)
226 2d2e_A SUFC protein; ABC-ATPas 23.2 53 0.0018 28.6 3.3 23 42-64 28-52 (250)
227 4a2c_A Galactitol-1-phosphate 22.7 2.1E+02 0.0071 25.8 7.5 36 267-303 228-263 (346)
228 2ze6_A Isopentenyl transferase 22.6 62 0.0021 28.2 3.6 22 44-65 2-25 (253)
229 2w58_A DNAI, primosome compone 22.6 84 0.0029 25.8 4.3 29 44-72 55-85 (202)
230 1ji0_A ABC transporter; ATP bi 22.3 48 0.0016 28.8 2.7 25 42-66 31-57 (240)
231 3kbq_A Protein TA0487; structu 22.1 66 0.0023 26.5 3.4 47 334-380 25-73 (172)
232 1mv5_A LMRA, multidrug resista 22.0 51 0.0017 28.6 2.8 25 42-66 27-53 (243)
233 2nq2_C Hypothetical ABC transp 21.9 48 0.0016 29.1 2.7 24 42-65 30-55 (253)
234 1g6h_A High-affinity branched- 21.9 49 0.0017 29.0 2.7 25 42-66 32-58 (257)
235 2ixe_A Antigen peptide transpo 21.9 51 0.0018 29.2 2.9 25 42-66 44-70 (271)
236 1y5e_A Molybdenum cofactor bio 21.6 90 0.0031 25.4 4.2 45 335-379 34-82 (169)
237 1zd8_A GTP:AMP phosphotransfer 21.6 49 0.0017 28.0 2.7 23 43-65 7-31 (227)
238 2pjz_A Hypothetical protein ST 21.4 46 0.0016 29.5 2.4 23 43-65 30-54 (263)
239 1ko7_A HPR kinase/phosphatase; 21.3 1.4E+02 0.0046 27.3 5.6 57 5-61 84-164 (314)
240 3fdi_A Uncharacterized protein 21.1 56 0.0019 27.4 2.9 23 43-65 6-30 (201)
241 2vp4_A Deoxynucleoside kinase; 21.1 40 0.0014 28.9 1.9 23 42-64 19-43 (230)
242 2cbz_A Multidrug resistance-as 21.0 56 0.0019 28.3 2.9 24 42-65 30-55 (237)
243 3dl0_A Adenylate kinase; phosp 20.8 62 0.0021 27.1 3.1 26 45-73 2-29 (216)
244 2pjk_A 178AA long hypothetical 20.7 1.2E+02 0.0042 24.8 4.9 45 335-379 43-91 (178)
245 2ghi_A Transport protein; mult 20.7 57 0.0019 28.7 2.9 25 42-66 45-71 (260)
246 2ihy_A ABC transporter, ATP-bi 20.5 54 0.0018 29.3 2.7 25 42-66 46-72 (279)
247 3pzy_A MOG; ssgcid, seattle st 20.3 1.3E+02 0.0044 24.4 4.8 46 333-379 28-76 (164)
248 2xhz_A KDSD, YRBH, arabinose 5 20.1 1.5E+02 0.0053 23.8 5.4 9 367-375 94-102 (183)
249 3euj_A Chromosome partition pr 20.1 73 0.0025 31.0 3.7 25 44-68 30-56 (483)
No 1
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=100.00 E-value=1.5e-69 Score=540.93 Aligned_cols=376 Identities=25% Similarity=0.387 Sum_probs=321.5
Q ss_pred eeeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccc
Q 015421 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82 (407)
Q Consensus 3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~ 82 (407)
-+||++|+++++||++++|+++|+|++++++++++.. +.++|+||||||||||++||+++|+..|.++++.||+|.|+
T Consensus 74 d~vv~spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~--~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gnig~~~ 151 (451)
T 3lk7_A 74 CYMIKNPGIPYNNPMVKKALEKQIPVLTEVELAYLVS--ESQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGNIGFPA 151 (451)
T ss_dssp EEEEECTTSCTTSHHHHHHHHTTCCEECHHHHHHHHC--CSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEEETSSSCH
T ss_pred CEEEECCcCCCCChhHHHHHHCCCcEEeHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEeeecChhh
Confidence 5799999999999999999999999999999999987 45999999999999999999999999999999999999998
Q ss_pred hhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEe
Q 015421 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162 (407)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n 162 (407)
+.... ...+.+++|+|+|+++++.++. ++|+++|||||++||+|+|||+|+|+++|.+|++.+++++.+|+|
T Consensus 152 ~~~~~-------~~~~~d~~VlE~~s~~l~~~~~-~~p~iaviTNI~~DHld~~gt~e~i~~aK~~i~~~~~~~~~~V~n 223 (451)
T 3lk7_A 152 SEVVQ-------AANDKDTLVMELSSFQLMGVKE-FRPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSSDFLVLN 223 (451)
T ss_dssp HHHTT-------TCCTTCEEEEECCHHHHTTCSS-CCCSEEEECCCCSCCHHHHSSHHHHHHHHHGGGTTCCTTSEEEEE
T ss_pred hhhhh-------cCCCCCEEEEECCccccccccc-cCCCEEEEcCCChhHhhhcCCHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 76532 1246789999999988887654 899999999999999999999999999999999998889999999
Q ss_pred CCChhhHHHHhccccceEEeecCCCc-ccccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCC
Q 015421 163 FGNQHLNEAIKGHRFNLAWIGAFPGV-KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVD 241 (407)
Q Consensus 163 ~dd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~ 241 (407)
.|||.+..++.....++++|+.+... ..... ...+.+. +. .......++++|.||++|+++|+ +++..+|++
T Consensus 224 ~dd~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~--~~-~~~~~~~l~l~G~hn~~NalaAi--a~a~~lgi~ 296 (451)
T 3lk7_A 224 FNQGISKELAKTTKATIVPFSTTEKVDGAYVQ--DKQLFYK--GE-NIMSVDDIGVPGSHNVENALATI--AVAKLAGIS 296 (451)
T ss_dssp TTSHHHHHHHTTCSSEEEEEESSSCCSSEEEE--TTEEEET--TE-EEEEGGGSSSCSHHHHHHHHHHH--HHHHHHTCC
T ss_pred CCcHHHHHHHhhcCCeEEEEccCCCcCCEEEE--CCEEEEC--Cc-EEeeccccCCCcHHHHHHHHHHH--HHHHHcCCC
Confidence 99999988887777788888865322 00000 1122222 21 11223579999999999999999 899999999
Q ss_pred HHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccCCCcEEEEECCCCCCCCCCCCcchHhhhhhc
Q 015421 242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321 (407)
Q Consensus 242 ~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l 321 (407)
++.|.++|++|++++||||++. ..+++.+|||||||||+|+.++++.++++|+++|+|++. ++. .++++++.+
T Consensus 297 ~~~i~~~L~~f~~~~gR~e~v~-~~~g~~vi~D~~a~np~a~~~al~~~~~~rii~I~g~~~-r~~-----d~~~l~~~l 369 (451)
T 3lk7_A 297 NQVIRETLSNFGGVKHRLQSLG-KVHGISFYNDSKSTNILATQKALSGFDNTKVILIAGGLD-RGN-----EFDELIPDI 369 (451)
T ss_dssp HHHHHHHHHHCCCCTTSSEEEE-EETTEEEEECTTCCSHHHHHHHHHTSCGGGEEEEECCSC-CSC-----CCGGGHHHH
T ss_pred HHHHHHHHHhCCCCCCcEEEEe-eeCCcEEEEeCCCCCHHHHHHHHHhCCCCCEEEEECCCC-CCC-----CHHHHHHHH
Confidence 9999999999999999999996 367899999999999999999999997656888888653 222 245677666
Q ss_pred cCccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHHHHhh
Q 015421 322 NHHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFF 401 (407)
Q Consensus 322 ~~~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~~~~~ 401 (407)
.+.|.++++|+.+..+.+.++..+. .+.+++++++|++.+.+.+++||+||++|+|+||++|++|++||+.|+++|+.
T Consensus 370 ~~~d~vi~~G~~~~~l~~~~~~~g~--~~~~~~~~~eAv~~a~~~a~~gD~VLlspa~as~d~f~~~~~RG~~F~~~v~~ 447 (451)
T 3lk7_A 370 TGLKHMVVLGESASRVKRAAQKAGV--TYSDALDVRDAVHKAYEVAQQGDVILLSPANASWDMYKNFEVRGDEFIDTFES 447 (451)
T ss_dssp TTCSEEEECSTTHHHHHHHHHHTTC--CEEECSSHHHHHHHHHHHCCTTCEEEECCSSCSTTTSSSHHHHHHHHHHHHHH
T ss_pred HhcCEEEEECCCHHHHHHHHHhcCC--ceEEeCCHHHHHHHHHHhCCCCCEEEEcCcCcchhhhhCHHHHHHHHHHHHHH
Confidence 6688999999999999988876653 46678999999999999999999999999999999999999999999999999
Q ss_pred hcc
Q 015421 402 SKH 404 (407)
Q Consensus 402 l~~ 404 (407)
|+.
T Consensus 448 l~~ 450 (451)
T 3lk7_A 448 LRG 450 (451)
T ss_dssp HHC
T ss_pred hhc
Confidence 864
No 2
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=100.00 E-value=2e-64 Score=502.53 Aligned_cols=367 Identities=29% Similarity=0.426 Sum_probs=304.8
Q ss_pred eeeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccc
Q 015421 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82 (407)
Q Consensus 3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~ 82 (407)
-+||++++++++||++..|++++++++++++++++.+ +.++|+||||||||||++||+++|++.|+++++.||+|.|+
T Consensus 66 d~vV~s~gi~~~~p~~~~a~~~~~~v~~~~~~~~~~~--~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gnig~~~ 143 (439)
T 2x5o_A 66 DLIVASPGIALAHPSLSAAADAGIEIVGDIELFCREA--QAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPA 143 (439)
T ss_dssp SEEEECTTSCTTCHHHHHHHHTTCEEECHHHHHHHHC--CSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEEESSSBCH
T ss_pred CEEEeCCCCCCCCHHHHHHHHCCCcEEEHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEecccCHHH
Confidence 3789999999999999999999999999999999886 48999999999999999999999999999999999999998
Q ss_pred hhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccC-CCHHHHHHHHHHhhcccCCCceEEE
Q 015421 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGLL 161 (407)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~-~t~e~i~~~K~~i~~~~~~~~~~v~ 161 (407)
+... ..+.+++|+|+|+++++.++. ++|+++|||||++||+++| +|+|+|+++|.++++ +++.+|+
T Consensus 144 ~~~~---------~~~~d~~VlE~~~~~l~~~~~-~~p~vaviTNI~~DHld~~G~t~e~i~~~K~~i~~---~~~~~V~ 210 (439)
T 2x5o_A 144 LMLL---------DDECELYVLELSSFQLETTSS-LQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYE---NAKVCVV 210 (439)
T ss_dssp HHHC---------CTTCCEEEEECCHHHHHTCCC-CCCSEEEECCCCSCCGGGCTTHHHHHHHHHHGGGT---TCSEEEE
T ss_pred HHHh---------CCCCCEEEEECCchhhccccc-CCCCEEEEeCCChhhcccccCCHHHHHHHHHHHHc---CCCEEEE
Confidence 7652 123588999999998988765 8999999999999999999 899999999999998 3689999
Q ss_pred eCCChhhHHHHhccccceEEeecCCC-cc-cccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcC
Q 015421 162 PFGNQHLNEAIKGHRFNLAWIGAFPG-VK-IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG 239 (407)
Q Consensus 162 n~dd~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lg 239 (407)
|.|||.+..+... ..++++|+.+.. +. +... ...+.+. .+. ..+....++++|.||++|+++|+ +++..+|
T Consensus 211 n~dd~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~--~~~~~~~-~~~-~~~~~~~l~l~G~hn~~NalaA~--a~~~~lg 283 (439)
T 2x5o_A 211 NADDALTMPIRGA-DERCVSFGVNMGDYHLNHQQ--GETWLRV-KGE-KVLNVKEMKLSGQHNYTNALAAL--ALADAAG 283 (439)
T ss_dssp ETTCGGGSCSCCC-SSCCEEECSSSSSEEEEEET--TEEEEEE-TTE-EEEEGGGCSCCSHHHHHHHHHHH--HHHHHTT
T ss_pred eCCCHHHHHHhhc-CCcEEEEeCCCcCcCcEEEE--CCEEEEe-CCc-EEEeehhcCCCCHHHHHHHHHHH--HHHHHcC
Confidence 9999987665543 456788875421 00 1000 0112221 111 11112478999999999999999 8899999
Q ss_pred CCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccCC-CcEEEEECCCCCCCCCCCCcchHhhh
Q 015421 240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAKVLNGQESNGFEKLI 318 (407)
Q Consensus 240 i~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~-~~~i~V~g~~~~~~~~~~~~~~~~~~ 318 (407)
++++.|.++|++|++++||||++. ..+++.+|||||||||+|+.++++.++. +|+++|+|++.+.++ +++++
T Consensus 284 i~~~~i~~~L~~f~~~~gR~e~~~-~~~~~~vi~Ds~a~np~a~~~al~~l~~~~~~i~v~g~~~k~~~------~~~~~ 356 (439)
T 2x5o_A 284 LPRASSLKALTTFTGLPHRFEVVL-EHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSAD------FSPLA 356 (439)
T ss_dssp CCHHHHHHHHHHCCCCTTSSEEEE-EETTEEEEECTTCCSHHHHHHHHTTCCCSSCEEEEEESBCTTCC------CGGGG
T ss_pred CCHHHHHHHHHhCCCCCCceEEEE-EECCEEEEEeCCCCCHHHHHHHHHhCCcCCCEEEEEcCCCCCCC------HHHHH
Confidence 999999999999999999999996 3578899999999999999999999874 689999998744332 34566
Q ss_pred hhccC-ccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCcccccChhhhhHHHHH
Q 015421 319 EPLNH-HRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 397 (407)
Q Consensus 319 ~~l~~-~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~~~r~~~~~~ 397 (407)
+.+.. .|.++++|+....+.+ +... .+..++++++|++.+.+.+++||+||++++|+||++|++|++||+.|++
T Consensus 357 ~~l~~~~d~vi~~g~~~~~~~~-~~~~----~~~~~~~~~~a~~~~~~~~~~gd~vL~~~a~~S~~~~~~~~~RG~~f~~ 431 (439)
T 2x5o_A 357 RYLNGDNVRLYCFGRDGAQLAA-LRPE----VAEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFKNFEQRGNEFAR 431 (439)
T ss_dssp GGSCSSSEEEEEESTTHHHHHT-TSGG----GEEECSSHHHHHHHHGGGCCTTCEEEECCSSBSTTTSSSHHHHHHHHHH
T ss_pred HHHHhhCCEEEEECCCHHHHHH-HhcC----CccccCCHHHHHHHHHHhCCCCCEEEEcchhhHhhhhhCHHHHHHHHHH
Confidence 66654 7889999998877765 3221 2446789999999999999999999999999999999999999999999
Q ss_pred HHhhhc
Q 015421 398 LAFFSK 403 (407)
Q Consensus 398 ~~~~l~ 403 (407)
+|+.|.
T Consensus 432 ~v~~l~ 437 (439)
T 2x5o_A 432 LAKELG 437 (439)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999985
No 3
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=100.00 E-value=5e-58 Score=462.02 Aligned_cols=360 Identities=15% Similarity=0.231 Sum_probs=280.6
Q ss_pred eeeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCc-ee-ecccCCc
Q 015421 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE-AF-VGGNLGN 80 (407)
Q Consensus 3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~-~~-~~g~~g~ 80 (407)
-+||+||+++++||++++|+++|+|+++++++++++. +..++|+||||||||||++|++++|+..|++ +. ++|+.+.
T Consensus 83 d~vV~Spgi~~~~p~~~~a~~~gi~v~~~~e~l~~~~-~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~~gg~~~~ 161 (494)
T 4hv4_A 83 SVVVVSTAISADNPEIVAAREARIPVIRRAEMLAELM-RYRHGIAVAGTHGKTTTTAMLSSIYAEAGLDPTFVNGGLVKA 161 (494)
T ss_dssp SEEEECTTSCTTCHHHHHHHHTTCCEEEHHHHHHHHH-TTSEEEEEECSSSHHHHHHHHHHHHHHTTCCCEEEEEEEETT
T ss_pred CEEEECCCCCCCCHHHHHHHHCCCCEEcHHHHHHHHh-cCCCEEEEecCCChHHHHHHHHHHHHhcCCCCEEEECCcccc
Confidence 4799999999999999999999999999999999887 5568999999999999999999999999985 33 4444332
Q ss_pred cchhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccC-CCHHHHHHHHHHhhcccCCCceE
Q 015421 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLG 159 (407)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~-~t~e~i~~~K~~i~~~~~~~~~~ 159 (407)
...... ..+.+++|+|+|++.... ..++|+++|||||++||+|+| +|+|+|+++|.++++.+++++.+
T Consensus 162 ~g~~~~---------~~~~d~~VlE~~e~~~s~--~~~~P~iaVITNI~~DHld~~G~t~e~~a~aK~~i~~~~~~~g~~ 230 (494)
T 4hv4_A 162 AGTHAR---------LGSSRYLIAEADESDASF--LHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRA 230 (494)
T ss_dssp TTEEEE---------CCSSSEEEEECCCGGGGG--GGCCCSEEEECCCCCSSCCSSTTHHHHHHHHHHHHHTTSCTTCEE
T ss_pred cccccc---------cCCCcEEEEEcccccccc--ccccCCEEEEcCCCHHHhhhhccCHHHHHHHHHHHHhcCCCCCEE
Confidence 211111 135688999999654322 347999999999999999999 79999999999999988888999
Q ss_pred EEeCCChhhHHHHhccccceEEeecCCCccccc-----ccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHH
Q 015421 160 LLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT-----EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL 234 (407)
Q Consensus 160 v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~ 234 (407)
|+|.|||.+..+......++++|+......+.. ......|.+...+. ....+.++++|.||++|+++|+ ++
T Consensus 231 V~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~f~~~~~~~--~~~~~~l~l~G~hnv~NalaAi--a~ 306 (494)
T 4hv4_A 231 VMCIDDPVVRELLPRVGRHITTYGFSDDADVQIASYRQEGPQGHFTLRRQDK--PLIEVTLNAPGRHNALNAAAAV--AV 306 (494)
T ss_dssp EEETTSHHHHHHGGGCCSCEEEEESSTTCSEEEEEEEEETTEEEEEEECTTS--CCEEEEESSCSHHHHHHHHHHH--HH
T ss_pred EEECCCHHHHHHHHhcCCCEEEEecCCCCceEEEEEEEeCCEEEEEEEECCc--eEEEEEecCCcHHHHHHHHHHH--HH
Confidence 999999999988877667888888653222111 11112233222211 0112468999999999999999 89
Q ss_pred HHHcCCCHHHHHHHhhcCCCCCCceeEEeeec---------CCEEEEEcCCCCCHHHHHHHHhcc----CCCcEEEEECC
Q 015421 235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDI---------QGVTWVDDSKATNLEATCTGLMDL----KGHKCVILLGG 301 (407)
Q Consensus 235 ~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~---------~~~~iidD~~a~np~s~~~al~~~----~~~~~i~V~g~ 301 (407)
+..+|++.+.|.++|++|++++||||++.. . +++.+||| |||||+++.++++.+ +++|+++|+|+
T Consensus 307 a~~lgi~~~~i~~~L~~f~g~~~R~e~v~~-~~~~~~~~~~~g~~vi~D-yaHnp~~i~a~l~al~~~~~~~rii~V~g~ 384 (494)
T 4hv4_A 307 ATEEGIEDEDILRALVGFQGTGRRFDFLGN-FPLAPVNGKEGSAMLVDD-YGHHPTEVDATIKAARAGWPDKRIVMLFQP 384 (494)
T ss_dssp HHHHTCCHHHHHHHHHHCCCBTTSSEEEEE-EESHHHHSCSSEEEEEEE-CCCSHHHHHHHHHHHHHHCTTSEEEEEECC
T ss_pred HHHcCCCHHHHHHHHHhCCCCCCccEEeee-ccccccccCCCCeEEEEe-CCCCHHHHHHHHHHHHhhcCCCeEEEEEcC
Confidence 999999999999999999999999999963 3 47899999 599999999988765 34578899986
Q ss_pred CCCCCCCCCCcchHhhhhhccCccEEEEe-----------CCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCC
Q 015421 302 QAKVLNGQESNGFEKLIEPLNHHRCVITF-----------GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG 370 (407)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~-----------g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~g 370 (407)
+.+.. .+..+.+++..+...|.++++ |..++.+.+.++..+. ..+.+++|+++|++.+.+.+++|
T Consensus 385 ~~~~r---~k~~~~~~~~~~~~aD~vilt~~~~~~e~p~~g~~~~~l~~~~~~~g~-~~~~~~~~~~eAv~~a~~~a~~g 460 (494)
T 4hv4_A 385 HRYTR---TRDLYDDFANVLSQVDVLLMLDVYAAGEPPIPGADSRALCRTIRNRGK-LDPILVPDSESAPEMLAQILNGE 460 (494)
T ss_dssp BCHHH---HHHTHHHHHHHHTTSSEEEEECCBCTTCCCCTTCSHHHHHHHHHTTTS-CCCEEECCTTTHHHHHHHHCCTT
T ss_pred CCCCc---hHHHHHHHHHHHhcCCEEEEeCCcCCccCCcCCccHHHHHHHHHhhCC-CCeEEeCCHHHHHHHHHHhCCCC
Confidence 54221 122456677766667888874 4456788888876542 24567889999999999999999
Q ss_pred CEEEEcCCCCCcccc
Q 015421 371 DAIVLSPGCASFDEF 385 (407)
Q Consensus 371 d~vL~~~G~~s~~~~ 385 (407)
|+||++ |+|||+.+
T Consensus 461 DvVL~~-GaG~~~~~ 474 (494)
T 4hv4_A 461 DLILVQ-GAGNIGKI 474 (494)
T ss_dssp EEEEEE-CSSTHHHH
T ss_pred CEEEEE-CCCCHHHH
Confidence 999986 88888654
No 4
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=100.00 E-value=2.9e-57 Score=459.25 Aligned_cols=372 Identities=19% Similarity=0.216 Sum_probs=272.2
Q ss_pred eeeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCcee-e-c-----
Q 015421 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF-V-G----- 75 (407)
Q Consensus 3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~-~-~----- 75 (407)
-+||+||+++++||++++|+++|+|++++++++++.+.+..++|+||||||||||++|++++|++.|+++. . +
T Consensus 82 d~vV~Spgi~~~~p~l~~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G~~~~~~iGg~~~~ 161 (524)
T 3hn7_A 82 DLVVVGNAMKRGMDVIEYMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAGIDAGFLIGGVPLV 161 (524)
T ss_dssp SEEEECTTCCTTSHHHHHHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTTCCCEEECSCCBCC
T ss_pred CEEEECCCcCCCCHHHHHHHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCEecc
Confidence 47999999999999999999999999999999998532467899999999999999999999999998753 2 2
Q ss_pred --------ccCCccchhhhhhcccCCCCCCCCcEEEEEeccccccc---CCc--cccceEEEEecCChhhhccCCCHHHH
Q 015421 76 --------GNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI---PNK--YFCPTVSVVLNLTPDHLERHKTMKNY 142 (407)
Q Consensus 76 --------g~~g~~~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~---~~~--~~~p~i~viTni~~dHl~~~~t~e~i 142 (407)
+++|.|....... .....+.+++++|+|+|+++... ... .++|+++|||||++||+|+|||+|+|
T Consensus 162 ~~T~~nln~~ig~~~~~~~~~--~~~~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~iaViTNI~~DHLd~~gs~e~y 239 (524)
T 3hn7_A 162 NTTDTNLQQVFAHSSYLGTEK--DDSDNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFADLDAI 239 (524)
T ss_dssp CSSCHHHHHHTTSSEECCCCC--CSSCTTCCCCEEEEECCSCCCBTTBCCCHHHHCCCSEEEECCCCCC------CHHHH
T ss_pred ccCchhhhhhhhhHHhhCCCc--ccccccccCcEEEEECCCCCccccccccceeeecCCEEEEcCCChHHccccCCHHHH
Confidence 2344443211000 00000234689999999865432 211 37999999999999999999999999
Q ss_pred HHHHHHhhcccCCCceEEEeCCChhhHHHHhc-cccceEEeecCC----------------------Cccccc-ccccce
Q 015421 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG-HRFNLAWIGAFP----------------------GVKIDT-EAKTAS 198 (407)
Q Consensus 143 ~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~-~~~~~~ 198 (407)
+++|.++++.+++++.+|+|.|||.+..+... ...++++||... ++.... ......
T Consensus 240 ~~aK~~i~~~~~~~g~~VlN~DD~~~~~~~~~~~~~~v~~fg~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~~~g~~ 319 (524)
T 3hn7_A 240 QTQFHHMVRMIPSTGKIIMPAATISLEDTLAKGVWTPIWRTSVIDSTISSVRREDSPLENSQAENSSDWQAELISADGSQ 319 (524)
T ss_dssp HHHHHHHHTTSCTTSEEEEESSCHHHHHHHHTCCCSCEEEEEEEC-------------------CCCSEEEEEEETTTTE
T ss_pred HHHHHHHHHhCCCCCEEEEECCCHHHHHHHHhccCCcEEEEecCcccccccccccccccccccCCCCcEEEEEEECCceE
Confidence 99999999999889999999999998887643 345677887531 111000 001122
Q ss_pred eEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCC
Q 015421 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278 (407)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~ 278 (407)
|.+...+....+..+.++++|.||++|+++|+ +++..+|++.+.|.++|++|++++||||++. ..+++.+|+|+ +|
T Consensus 320 f~l~~~~~~~~~~~~~l~l~G~hn~~NalaA~--a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~-~~~g~~vi~D~-ah 395 (524)
T 3hn7_A 320 FTVSFNDNKEATALVNWSMSGLHNVNNALVAI--AAAYNIGVSVKTACAALSAFAGIKRRMELIG-DVNDILVFDDF-AH 395 (524)
T ss_dssp EEEEETTEEEEEEEEECSCCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHHHTCCCBTTSSEEEE-EETTEEEEEEC-CC
T ss_pred EEEEECCccceeEEEEeCCCcHHHHHhHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCceEEEEE-ecCCcEEEEEC-CC
Confidence 33222222100223579999999999999999 8999999999999999999999999999996 35789999997 79
Q ss_pred CHHHHHHHHhccC----CCcEEEEECCCC---CCCCCCCCcchHhhhhhccCccEEEEeCCC-----hHHHHHHHHhCCC
Q 015421 279 NLEATCTGLMDLK----GHKCVILLGGQA---KVLNGQESNGFEKLIEPLNHHRCVITFGYS-----GVLIWKTLVNNGL 346 (407)
Q Consensus 279 np~s~~~al~~~~----~~~~i~V~g~~~---~~~~~~~~~~~~~~~~~l~~~~~v~~~g~~-----~~~~~~~l~~~~~ 346 (407)
||+++.++++.+. ++|+++|+|++. +.++ ..+.+...+...|.++++|+. +..+.+.+.....
T Consensus 396 np~~~~a~l~~l~~~~~~~r~i~V~g~~~~~~~~g~-----~~~~~~~~~~~aD~vil~~~~~r~~~~~~l~~~~~~~~~ 470 (524)
T 3hn7_A 396 HPTAITTTLDGAKKKLADRRLWAIIEPRSNTMKMGI-----HQDSLAQSATLADHTLWYEPTGLEWGLKEVIDNATIANP 470 (524)
T ss_dssp SHHHHHHHHHHHHHHHTTSCEEEEEECCCCSSCCSC-----CTTHHHHHTTTSSEEEEECCTTCCCSHHHHHHHHHHHCG
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEECCCCcchhhhh-----hHHHHHHHHhcCCEEEEcCCCCCCCCHHHHHHHHHhhcc
Confidence 9999999988763 468999999863 2222 233444445557899998865 4556555532100
Q ss_pred -CccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCccccc
Q 015421 347 -SIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFR 386 (407)
Q Consensus 347 -~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~ 386 (407)
...+.+++|+++|++.+.+.+++||+||++ |+|||+.+.
T Consensus 471 ~~~~~~~~~~~~eai~~~~~~a~~gD~VLv~-GaG~~~~v~ 510 (524)
T 3hn7_A 471 SIGSQQVLSSVDDIIKHICTHAKAGDAIVIM-SNGGFEGIH 510 (524)
T ss_dssp GGCCEEEESCHHHHHHHHHHHCCTTCEEEEE-ESSCGGGHH
T ss_pred CCCCeEEECCHHHHHHHHHHhCCCCCEEEEE-cCCCHHHHH
Confidence 124567899999999999999999999986 899998753
No 5
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A*
Probab=100.00 E-value=1.7e-58 Score=461.87 Aligned_cols=364 Identities=18% Similarity=0.166 Sum_probs=278.9
Q ss_pred eeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeeccc----CC
Q 015421 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LG 79 (407)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~----~g 79 (407)
.||.++.++ +.|.+. +++..++|++++..++.. .+.++|+||||||||||++||+++|+..|..+.+.|+ +|
T Consensus 65 ~vv~~~~~~-~~p~i~--v~~~~~al~~la~~~~~~-~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~s~g~~n~~ig 140 (454)
T 2am1_A 65 VTLSEKEVS-NHPYIL--VDDVLTAFQSLASYYLEK-TTVDVFAVTGSNGKTTTKDMLAHLLSTRYKTYKTQGNYNNEIG 140 (454)
T ss_dssp EEEESSCCC-SSCEEE--CSCHHHHHHHHHHHHHHH-HCCEEEEEECCCSSSCHHHHHHHHHTTTSCEEECCTTCCSTTH
T ss_pred EEEECCCCC-CCCEEE--ECCHHHHHHHHHHHHhhC-CCCCEEEEeCCCCcHHHHHHHHHHHHhcCCEeecCCccCcccc
Confidence 356666554 455433 344556667777665532 1678999999999999999999999999976677777 45
Q ss_pred ccchhhhhhcccCCCCCCCCcEEEEEecc-ccccc--CCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCC
Q 015421 80 NPLSEAAFHCIALPSSKPKFQVAVVEVSS-YQMEI--PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNT 156 (407)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~V~E~g~-~~l~~--~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~ 156 (407)
.|++...+ ..+++++|+|+|+ +.++. ....++|+++|||||++||+++|||+|+|+++|++|++.++++
T Consensus 141 ~p~t~~~~--------~~~~d~~VlE~g~~~~~~~~~~~~~~~p~vaviTNi~~DHld~~gt~e~~a~aK~~i~~~~~~~ 212 (454)
T 2am1_A 141 LPYTVLHM--------PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASG 212 (454)
T ss_dssp HHHHHHTC--------CTTCCEEEEECCCSSTTHHHHHHHHHCCSEEEECCCCCSSCTTCCCHHHHHHHHGGGGTTCCTT
T ss_pred hHHHHhcC--------CCCCcEEEEEcCCCCcchHHHHhCccCCCEEEEcCCchHhhhhcCCHHHHHHHHHHHHhhcccC
Confidence 55543322 4578999999996 44442 2223799999999999999999999999999999999988888
Q ss_pred ceEEEeCCChhhHHHHhccccceEEeecCCCcccccccccceeEeccCCeeeeee----ecccCCCChhHHHHHHHHHHH
Q 015421 157 KLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQ----LHNMKVMGRHNYHNAAVAALS 232 (407)
Q Consensus 157 ~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~G~~~~~Nal~A~~~ 232 (407)
+.+|+|.|| ....++.. ..++++|+......+ ..+.....+..+.+. .+.++++|.||++|+++|+
T Consensus 213 ~~~V~n~dd-~~~~~~~~-~~~~~~~g~~~~~d~------~~i~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~-- 282 (454)
T 2am1_A 213 SLLLAPADP-IVEDYLPI-DKKVVRFGQGAELEI------TDLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIAS-- 282 (454)
T ss_dssp CEEEEESCG-GGGGGCCS-SSEEEEESTTSSBCE------EEEEECSSCEEEEETTCSSEEEESSCCHHHHHHHHHHH--
T ss_pred CEEEEEcHH-HHHHHHhc-CCcEEEEeCCCCCce------eeeEEeCCceEEEEEecCcEEEecCCCHHHHHHHHHHH--
Confidence 999999999 77666544 457888885432111 011111112222221 2468999999999999999
Q ss_pred HHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC---C---CcEEEEECCCCCCC
Q 015421 233 VLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---G---HKCVILLGGQAKVL 306 (407)
Q Consensus 233 a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~---~~~i~V~g~~~~~~ 306 (407)
+++..+|++++.|.++|++|+++|||||++. ..++..+|||+|||||+|++++++.+. . +|+++|+|+|.+.|
T Consensus 283 a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~-~~~~~~iiDDsyahnp~s~~~~l~~l~~~~~~~~~~~i~V~G~~~e~G 361 (454)
T 2am1_A 283 YVALQEGVSEEQIRLAFQHLELTRNRTEWKK-AANGADILSDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELG 361 (454)
T ss_dssp HHHHHTTCCHHHHHHHGGGCCCCCCCSCEEC-CTTTCEEEEECSCCSHHHHHHHHHHHTTSCCCSSCEEEEEEECCCCCC
T ss_pred HHHHHcCCCHHHHHHHHHhCCCccCCeeEEE-CCCCeEEEEeCCCCCHHHHHHHHHHHHhcccccCCCEEEEECCchhcC
Confidence 8899999999999999999999999999995 245788999999999999999998874 2 68899999998888
Q ss_pred CCCCCcchHhhhhhccC--ccEEEEeCCChHHHHHHHHhC---CCCcccc---ccccHHHHHHHHHHhcCCCCEEEEcCC
Q 015421 307 NGQESNGFEKLIEPLNH--HRCVITFGYSGVLIWKTLVNN---GLSIPCF---AVANMKDAVNHARRMATNGDAIVLSPG 378 (407)
Q Consensus 307 ~~~~~~~~~~~~~~l~~--~~~v~~~g~~~~~~~~~l~~~---~~~~~~~---~~~~~~~a~~~a~~~~~~gd~vL~~~G 378 (407)
+++. ..++++++.+.. .|.++++|+++..+.+.+... +....+. .++|+++|++.+.+.+++||+||++ |
T Consensus 362 ~~~~-~~~~~~~~~~~~~~~d~vi~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~a~~gd~VLv~-G 439 (454)
T 2am1_A 362 DQSV-QLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLK-G 439 (454)
T ss_dssp TTHH-HHHHHGGGGCCTTTCSEEEEEESTTHHHHHHHHHHSCTTCEEEEEBSSSCBTHHHHHHHHHHHCCTTEEEEEE-S
T ss_pred cHHH-HHHHHHHHHHHhcCCCEEEEECcCHHHHHHHHhhccccCcceeeecccCCCCHHHHHHHHHHhCCCCCEEEEE-e
Confidence 7663 357788887753 789999999888877755432 1100111 4579999999999999999999997 5
Q ss_pred CCCcccccChhhhhHHHHHHHhhhc
Q 015421 379 CASFDEFRNFEHRGMVFQELAFFSK 403 (407)
Q Consensus 379 ~~s~~~~~~~~~r~~~~~~~~~~l~ 403 (407)
||++.||++++.|+
T Consensus 440 -----------S~~~~~e~~~~~l~ 453 (454)
T 2am1_A 440 -----------SNSMNLAKLVESLE 453 (454)
T ss_dssp -----------SCCHHHHHHHHHHH
T ss_pred -----------CCcCCHHHHHHHHh
Confidence 79999999999886
No 6
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=6.7e-58 Score=456.94 Aligned_cols=364 Identities=19% Similarity=0.257 Sum_probs=270.9
Q ss_pred eeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeeccc----CC
Q 015421 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LG 79 (407)
Q Consensus 4 ~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~----~g 79 (407)
.||.++.++++.|.+. +++..++|++++..++.. .+.++|+||||||||||++||+++|+..|...++.|+ +|
T Consensus 64 ~vv~~~~~~~~~p~i~--v~~~~~~l~~la~~~~~~-~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~t~g~~n~~ig 140 (452)
T 1gg4_A 64 ALLVSRPLDIDLPQLI--VKDTRLAFGELAAWVRQQ-VPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIG 140 (452)
T ss_dssp EEEESSCCSCSSCEEE--ESCHHHHHHHHHHHHHHH-SCCEEEEEECSSCHHHHHHHHHHHHTTTSCEEECCTTCCSTTH
T ss_pred EEEECCCcCCCCCEEE--ECCHHHHHHHHHHHHhcC-CCCCEEEEeCCCCcHHHHHHHHHHHHhcCCEeeccccccCCcc
Confidence 4566665554445332 344455666676665542 3689999999999999999999999999976677777 45
Q ss_pred ccchhhhhhcccCCCCCCCCcEEEEEec-cccccc--CCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCC
Q 015421 80 NPLSEAAFHCIALPSSKPKFQVAVVEVS-SYQMEI--PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNT 156 (407)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~V~E~g-~~~l~~--~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~ 156 (407)
.|++... ...+++++|+|+| ++.++. ....++|+++|||||++||+++|||+|+|+++|++|++.++++
T Consensus 141 ~p~t~~~--------~~~~~d~~VlE~g~~~~~~~~~~~~~~~p~vaviTNI~~DHld~~gt~e~~~~aK~~i~~~~~~~ 212 (452)
T 1gg4_A 141 VPMTLLR--------LTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPEN 212 (452)
T ss_dssp HHHHHTT--------CCTTCSEEEEECCCSSSSHHHHHHHHHCCSEEEECCCC--------CHHHHHHHHHGGGGGCCTT
T ss_pred hhHHHHc--------CCCCCcEEEEEeCCCCcchHHHHhCccCCCEEEECCCChHHhhhcCCHHHHHHHHHHHHhhcccC
Confidence 5544322 1456899999999 455542 2223799999999999999999999999999999999988888
Q ss_pred ceEEEeCCChhhHHHH--hccccceEEeecCC---Cccccc---ccccceeEeccCCeeeeeeecccCCCChhHHHHHHH
Q 015421 157 KLGLLPFGNQHLNEAI--KGHRFNLAWIGAFP---GVKIDT---EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAV 228 (407)
Q Consensus 157 ~~~v~n~dd~~~~~~~--~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~ 228 (407)
+.+|+|.|||....+. .. ..++++|+... ++.... ......|.+...+... .+.++++|.||++|+++
T Consensus 213 ~~~V~n~dd~~~~~~~~~~~-~~~~~~~g~~~~~~d~~~~~~~~~~~g~~~~~~~~~~~~---~~~l~l~G~hn~~Nala 288 (452)
T 1gg4_A 213 GIAIMNADNNDWLNWQSVIG-SRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSV---DVLLPLPGRHNIANALA 288 (452)
T ss_dssp CEEEEETTBCCHHHHHHHHT-TSEEEEECSSCTTCSBEEEEEEECSSSEEEEEEETTEEE---EEEECSSSTHHHHHHHH
T ss_pred CEEEEeCCcHHHHHHHHhhc-CCCEEEEeCCCCCCcEEEEEEEEcCCceEEEEEECCCEE---EEEeCCCcHHHHHHHHH
Confidence 9999999999887763 22 45778888642 222110 0111123322211111 34789999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC--CCcEEEEECCCCCCC
Q 015421 229 AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQAKVL 306 (407)
Q Consensus 229 A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~--~~~~i~V~g~~~~~~ 306 (407)
|+ +++..+|++++.|.++|++|+++|||||++. ..+++.+|||+|||||+|++++++.+. .+|+++|+|+|.+.|
T Consensus 289 A~--a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~-~~~~~~vidDsyahnp~s~~~~l~~l~~~~~~~i~V~G~~~e~g 365 (452)
T 1gg4_A 289 AA--ALSMSVGATLDAIKAGLANLKAVPGRLFPIQ-LAENQLLLDDSYNANVGSMTAAVQVLAEMPGYRVLVVGDMAELG 365 (452)
T ss_dssp HH--HHHHHTTCCHHHHHHHHTTCCCCTTSSEEEE-EETTEEEEECCSCCCHHHHHHHHHHHHHSSSEEEEEECCCCCCT
T ss_pred HH--HHHHHcCCCHHHHHHHHHhCCCCCCCceEEE-CCCCcEEEEeCCCCCHHHHHHHHHHHHhccCCEEEEECCccccC
Confidence 99 8999999999999999999999999999996 356789999999999999999998874 268899999998888
Q ss_pred CCCCCcchHhhhhhcc--CccEEEEeCCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCC--CCEEEEcCCCCCc
Q 015421 307 NGQESNGFEKLIEPLN--HHRCVITFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATN--GDAIVLSPGCASF 382 (407)
Q Consensus 307 ~~~~~~~~~~~~~~l~--~~~~v~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~--gd~vL~~~G~~s~ 382 (407)
+++.+ .++++++.+. ..|.++++|+.+..+.+.+.. + .+++|+++|++.+.+.+++ ||+||++ |
T Consensus 366 ~~~~~-~~~~~~~~~~~~~~d~vi~~g~~~~~i~~~~~~-~-----~~~~~~~~ai~~a~~~~~~~~gd~VLv~-G---- 433 (452)
T 1gg4_A 366 AESEA-CHVQVGEAAKAAGIDRVLSVGKQSHAISTASGV-G-----EHFADKTALITRLKLLIAEQQVITILVK-G---- 433 (452)
T ss_dssp THHHH-HHHHHHHHHHHHTCSEEEEESSSTHHHHHHTTS-C-----EEESSHHHHHHHHHHHHHHCSSEEEEEE-C----
T ss_pred ChhHH-HHHHHHHHHHHcCCCEEEEECcCHHHHHHHhhc-C-----ceeCCHHHHHHHHHHhhcccCCcEEEEE-c----
Confidence 76533 5667887665 378999999998887775531 1 2568999999999999899 9999997 5
Q ss_pred ccccChhhhhHHHHHHHhhhcc
Q 015421 383 DEFRNFEHRGMVFQELAFFSKH 404 (407)
Q Consensus 383 ~~~~~~~~r~~~~~~~~~~l~~ 404 (407)
||++.||++++.|.+
T Consensus 434 -------S~~~~~e~i~~~l~~ 448 (452)
T 1gg4_A 434 -------SRSAAMEEVVRALQE 448 (452)
T ss_dssp -------CGGGTTHHHHHHHC-
T ss_pred -------CCcCCHHHHHHHHHH
Confidence 799999999999864
No 7
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=100.00 E-value=1.2e-55 Score=443.59 Aligned_cols=363 Identities=17% Similarity=0.204 Sum_probs=279.6
Q ss_pred eeeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCc-e-eecccCCc
Q 015421 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE-A-FVGGNLGN 80 (407)
Q Consensus 3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~-~-~~~g~~g~ 80 (407)
.+||++++++++||++++|++.++|++++++.++++. ++.++|+||||||||||++||+++|+++|++ + .++|+++.
T Consensus 79 ~~vv~s~~i~~~~~~~~~a~~~~i~vl~~~~~l~~~~-~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~p~~~igg~~~~ 157 (475)
T 1p3d_A 79 SVVVVSSAIKDDNPELVTSKQKRIPVIQRAQMLAEIM-RFRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKS 157 (475)
T ss_dssp SEEEECTTSCTTCHHHHHHHHTTCCEEEHHHHHHHHH-HTSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEETT
T ss_pred CEEEECCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHh-cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEEECCcccc
Confidence 3689999999999999999999999999999998877 4579999999999999999999999999986 4 36676653
Q ss_pred cchhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccC-CCHHHHHHHHHHhhcccCCCceE
Q 015421 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLG 159 (407)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~-~t~e~i~~~K~~i~~~~~~~~~~ 159 (407)
+.... ...+.+++|+|+|+.+. ....++|+++|||||++||+|+| +|+|+|+++|.+++..+++++.+
T Consensus 158 ~~~~~---------~~~~~d~~VlE~~~~~~--~~~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~~~~~~~~~ 226 (475)
T 1p3d_A 158 AGKNA---------HLGASRYLIAEADESDA--SFLHLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLA 226 (475)
T ss_dssp TTEEE---------ECCSSSEEEEECCCTTS--GGGGCCCSEEEECCCCCCSGGGGTTCHHHHHHHHHHHHTTSCTTCEE
T ss_pred ccccc---------ccCCCCEEEEEecCCcC--ccccccCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHhhCCCCCEE
Confidence 22111 02356889999995433 33447899999999999999999 89999999999999988888999
Q ss_pred EEeCCChhhHHHHhccccceEEeecCCCccccc-----ccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHH
Q 015421 160 LLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT-----EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL 234 (407)
Q Consensus 160 v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~ 234 (407)
|+|.|||.+..+......++++|+......+.. +.....|.+...+.. ...+.++++|.||++|+++|+ ++
T Consensus 227 V~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~f~~~~~~~~--~~~~~l~l~G~hn~~NalaAi--a~ 302 (475)
T 1p3d_A 227 VMCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNE--RINVLLNVPGKHNALNATAAL--AV 302 (475)
T ss_dssp EEETTCHHHHHHHHHHCSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTCC--EEEEEESSCSHHHHHHHHHHH--HH
T ss_pred EEECCCHHHHHHHHhcCCCEEEEecCCCCcEEEEEEEEcCCceEEEEEECCCe--EEEEEEcCccHHHHHHHHHHH--HH
Confidence 999999998887765556788888643211110 111122333221111 013478999999999999999 89
Q ss_pred HHHcCCCHHHHHHHhhcCCCCCCceeEEeeec---CCEEEEEcCCCCCHHHHHHHHhccC----CCcEEEEECCCCCCCC
Q 015421 235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDI---QGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLN 307 (407)
Q Consensus 235 ~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~---~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~g~~~~~~~ 307 (407)
+..+|++.+.|.++|++|++++||||++.... +++.+|+| |||||+++.++++.+. ++|+++|+|++.. .
T Consensus 303 ~~~lgi~~~~i~~~L~~f~~~~gR~e~v~~~~~~~~~~~vi~D-yaHnp~~~~a~l~al~~~~~~~~i~~v~g~~~~--~ 379 (475)
T 1p3d_A 303 AKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD-YGHHPTEVGVTIKAAREGWGDKRIVMIFQPHRY--S 379 (475)
T ss_dssp HHHTTCCHHHHHHHHHTCCCBTTSSEEEEEEEETTEEEEEEEE-CCCSHHHHHHHHHHHHHHHCSSCEEEEECCBCH--H
T ss_pred HHHcCCCHHHHHHHHHhCCCCCCCCEEEecccccCCCcEEEEe-CCCCHHHHHHHHHHHHhhcCCCeEEEEECCCCC--c
Confidence 99999999999999999999999999995311 36889999 6999999999887763 3678899986531 1
Q ss_pred CCCCcchHhhhhhccCccEEEEe-----------CCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEc
Q 015421 308 GQESNGFEKLIEPLNHHRCVITF-----------GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLS 376 (407)
Q Consensus 308 ~~~~~~~~~~~~~l~~~~~v~~~-----------g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~ 376 (407)
.. +..+.++++.+...|.++++ |..++.+.+.+...+. ..+.+++++++|++.+.+.+++||+||++
T Consensus 380 r~-~~~~~~~~~~~~~~d~vi~t~~~~~~e~~~~g~~~~~l~~~~~~~~~-~~~~~~~~~~~ai~~a~~~a~~gd~VLv~ 457 (475)
T 1p3d_A 380 RT-RDLFDDFVQVLSQVDALIMLDVYAAGEAPIVGADSKSLCRSIRNLGK-VDPILVSDTSQLGDVLDQIIQDGDLILAQ 457 (475)
T ss_dssp HH-HHTHHHHHHHHTTSSEEEEECCBCTTCCCCTTCSHHHHHHHHHHHTS-CCCEEESCGGGHHHHHHHHCCTTCEEEEE
T ss_pred cH-HHHHHHHHHHHHhCCEEEEcCCcCCCCCCCCCCCHHHHHHHHHhhCC-CceEEECCHHHHHHHHHHhCCCCCEEEEE
Confidence 11 12456777766667888774 4566778777754321 13455689999999999999999999986
Q ss_pred CCCCCcccccC
Q 015421 377 PGCASFDEFRN 387 (407)
Q Consensus 377 ~G~~s~~~~~~ 387 (407)
|+|||+.+..
T Consensus 458 -G~Gs~~~v~~ 467 (475)
T 1p3d_A 458 -GAGSVSKISR 467 (475)
T ss_dssp -CSSTHHHHHH
T ss_pred -CCCCHHHHHH
Confidence 8899887543
No 8
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=100.00 E-value=4.7e-55 Score=440.79 Aligned_cols=362 Identities=15% Similarity=0.203 Sum_probs=274.1
Q ss_pred eeeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCc-e-eecccCCc
Q 015421 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE-A-FVGGNLGN 80 (407)
Q Consensus 3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~-~-~~~g~~g~ 80 (407)
-+||++++++++||++++|++.++|++++++.++++. ++.++|+||||||||||++||+++|+++|++ + .++|+++.
T Consensus 80 ~~vv~s~~i~~~~p~~~~a~~~~ipvl~~~~~l~~~~-~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~p~~~igg~~~~ 158 (491)
T 2f00_A 80 SVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELM-RFRHGIAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKA 158 (491)
T ss_dssp SEEEECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHH-TTSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEETT
T ss_pred CEEEECCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHH-cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEEECCeecc
Confidence 3689999999999999999999999999999999887 4579999999999999999999999999986 4 36676653
Q ss_pred cchhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccC-CCHHHHHHHHHHhhcccCCCceE
Q 015421 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLG 159 (407)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~-~t~e~i~~~K~~i~~~~~~~~~~ 159 (407)
+..... ..+.+++|+|+|+.+. ....++|+++|||||++||+++| +|+|+|+++|.++++.+++++.+
T Consensus 159 ~~~~~~---------~~~~d~~VlE~~~~~~--~~~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~~~~~~~~~ 227 (491)
T 2f00_A 159 AGVHAR---------LGHGRYLIAEADESDA--SFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRA 227 (491)
T ss_dssp TTEEEE---------CCSSSEEEEECCCTTS--GGGGCCCSEEEECCCCSCSGGGTTTCHHHHHHHHHHHHTTSCTTCEE
T ss_pred cccccc---------CCCCCEEEEEeCCCcc--chhcCCCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHHhCCCCCEE
Confidence 221110 2356889999995432 33347899999999999999999 89999999999999988888999
Q ss_pred EEeCCChhhHHHHhccccceEEeecCCCccccc-----ccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHH
Q 015421 160 LLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT-----EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL 234 (407)
Q Consensus 160 v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~ 234 (407)
|+|.|||.+..+......++++|+......+.. +.....|.+...+.. ...+.++++|.||++|+++|+ ++
T Consensus 228 V~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~l~G~hn~~NalaAi--a~ 303 (491)
T 2f00_A 228 VMCVDDPVIRELLPRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKE--PMRVTLNAPGRHNALNAAAAV--AV 303 (491)
T ss_dssp EEETTSHHHHHHGGGCCSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTSC--CEEEEESSCSHHHHHHHHHHH--HH
T ss_pred EEECCCHHHHHHHHhcCCcEEEEeCCCCCCEEEEEEEEcCCceEEEEEECCce--EEEEEEccchHHHHHHHHHHH--HH
Confidence 999999998888766566788888643211110 111112333211111 013468999999999999999 88
Q ss_pred HHHcCCCHHHHHHHhhcCCCCCCceeEEeeec-------CC-EEEEEcCCCCCHHHHHHHHhccC----CCcEEEEECCC
Q 015421 235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDI-------QG-VTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQ 302 (407)
Q Consensus 235 ~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~-------~~-~~iidD~~a~np~s~~~al~~~~----~~~~i~V~g~~ 302 (407)
+..+|++.+.|.++|++|++++||||++.... ++ +.+|+| |||||+++.++++.+. ++|+++|+|++
T Consensus 304 a~~lgi~~~~i~~~L~~f~~~~gR~e~v~~~~~~~~~~~~g~~~vi~D-yaHnp~~~~a~l~al~~~~~~~~i~~v~g~~ 382 (491)
T 2f00_A 304 ATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDD-YGHHPTEVDATIKAARAGWPDKNLVMLFQPH 382 (491)
T ss_dssp HHHHTCCHHHHHHHHHTCCCBTTSSEEEEEEESSSSSSCSSEEEEEEE-CCCSHHHHHHHHHHHHTTCCSSEEEEEECCB
T ss_pred HHHcCCCHHHHHHHHHhCCCCCCCCEEEccccccccccCCCcEEEEEe-CCCCHHHHHHHHHHHHhhcCCCeEEEEECCC
Confidence 99999999999999999999999999995311 36 899999 6999999999887763 35788888865
Q ss_pred CCCCCCCCCcchHhhhhhccCccEEEEe-----------CCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCC
Q 015421 303 AKVLNGQESNGFEKLIEPLNHHRCVITF-----------GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGD 371 (407)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~-----------g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd 371 (407)
.. ... +..+.++++.+...|.++++ |..++.+.+.+...+. ..+.+++++++|++.+.+.+++||
T Consensus 383 ~~--~r~-k~~~~~~~~~~~~~d~vilt~~~~~~e~~~~g~~~~~l~~~~~~~~~-~~~~~~~~~~~ai~~a~~~a~~gd 458 (491)
T 2f00_A 383 RF--TRT-RDLYDDFANVLTQVDTLLMLEVYPAGEAPIPGADSRSLCRTIRGRGK-IDPILVPDPARVAEMLAPVLTGND 458 (491)
T ss_dssp CH--HHH-TTTHHHHHHHHTTSSEEEECCCBCSSSCCCTTSSHHHHTTC--------CCEECCCSSCCHHHHGGGCCSEE
T ss_pred CC--cch-HHHHHHHHHHHHhCCEEEEcCCcCCCCCCCCCCCHHHHHHHHHhhCC-CceEEeCCHHHHHHHHHHhCCCCC
Confidence 32 111 12466777776667888874 3444566554433221 124556899999999999999999
Q ss_pred EEEEcCCCCCccccc
Q 015421 372 AIVLSPGCASFDEFR 386 (407)
Q Consensus 372 ~vL~~~G~~s~~~~~ 386 (407)
+||++ |++||+.+.
T Consensus 459 ~VLv~-gaGsl~~v~ 472 (491)
T 2f00_A 459 LILVQ-GAGNIGKIA 472 (491)
T ss_dssp EEEEE-CSTTHHHHH
T ss_pred EEEEE-CCCCHHHHH
Confidence 99986 778877544
No 9
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=1.1e-52 Score=420.70 Aligned_cols=346 Identities=18% Similarity=0.203 Sum_probs=258.5
Q ss_pred eeeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCC--CCcEEEEecCCChHhHHHHHHHHHHhcCCce--eecccC
Q 015421 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPR--SIKILAVTGTNGKSTVVTFVGQMLNHLGIEA--FVGGNL 78 (407)
Q Consensus 3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~--~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~--~~~g~~ 78 (407)
-+||+||+++++||++++|++.++|+++++++++++. + +.++|+||||||||||++||+++|+++|+++ +++|++
T Consensus 73 d~vV~spgi~~~~p~~~~a~~~gi~v~~~~e~l~~~~-~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~~~~~~~g~~ 151 (469)
T 1j6u_A 73 DLVIKTPAVRDDNPEIVRARMERVPIENRLHYFRDTL-KREKKEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIM 151 (469)
T ss_dssp SEEEECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHH-HHHCCCEEEEECSSSHHHHHHHHHHHHHHTTCCCEEECSSCC
T ss_pred CEEEECCCcCCCCHHHHHHHHcCCcEEEHHHHHHHHH-hccCCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCee
Confidence 3699999999999999999999999999999999877 4 5789999999999999999999999999874 577775
Q ss_pred Cccc-hhhhhhcccCCCCCCCCcEEEEEecccccccCCccccceEEEEecCChhhhccCCC-HHHHHHHHHHhhcccCCC
Q 015421 79 GNPL-SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT-MKNYALTKCHLFSHMVNT 156 (407)
Q Consensus 79 g~~~-~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~~~~~~p~i~viTni~~dHl~~~~t-~e~i~~~K~~i~~~~~~~ 156 (407)
...- ....+ .+.+ +|+|+|+++. ....++|+++|||||++||+|+||+ +|+|+++|.++++.++
T Consensus 152 ~~~g~~~~~~---------~~~~-~V~E~~~~~~--~~~~~~p~vaviTNI~~DHld~~g~t~e~ia~ak~~~~~~~~-- 217 (469)
T 1j6u_A 152 DSLEHGNYEK---------GNGP-VVYELDESEE--FFSEFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISRNTD-- 217 (469)
T ss_dssp TTSTTSSEEC---------CSSC-EEEEECTTSG--GGGGCCCSEEEECCCCCCCGGGGTTCHHHHHHHHHHHHHTCS--
T ss_pred cccCcccccc---------CCCC-EEEECCCccC--ccccccCCEEEEcCCCcchhhhhcCHHHHHHHHHHHHHhhCC--
Confidence 4422 11111 2345 9999998743 3345799999999999999999997 9999999999988653
Q ss_pred ceEEEeCCChhhHHHHhccccceEEeecCC-Cccc--cccccc-ceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHH
Q 015421 157 KLGLLPFGNQHLNEAIKGHRFNLAWIGAFP-GVKI--DTEAKT-ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALS 232 (407)
Q Consensus 157 ~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~ 232 (407)
.+|+|.|||.+..+ ++++|+... ++.. ...... ..|.+...+.. +..+.++++|.||++|+++|+
T Consensus 218 -~~V~n~dd~~~~~~------~~~~~g~~~~d~~~~~~~~~~~~~~f~~~~~~~~--~~~~~l~l~G~hn~~NalaAi-- 286 (469)
T 1j6u_A 218 -LVVTFAEDELTSHL------GDVTFGVKKGTYTLEMRSASRAEQKAMVEKNGKR--YLELKLKVPGFHNVLNALAVI-- 286 (469)
T ss_dssp -EEEEETTCTTTGGG------CSEEECSSSSSEEEEEEEECSSCEEEEEEETTEE--EEEEEESSCSHHHHHHHHHHH--
T ss_pred -EEEEECCChhhccc------eEEEEECCCceEEEEEEECCCCCEEEEEEECCeE--EEEEEecCcCHHHHHHHHHHH--
Confidence 89999999876432 566776432 1111 001011 12222212211 123578999999999999999
Q ss_pred HHHHHcCCCHHHHHHHhhcCCCCCCceeEE--eeecCCEEEEEcCCCCCHHHHHHHHhccC----CCcEEEEECCCC-CC
Q 015421 233 VLGLDIGVDVEALNSTIEILRTPPHRMQIV--HRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQA-KV 305 (407)
Q Consensus 233 a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~--~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~g~~~-~~ 305 (407)
+++..+|++.+.|.++|++|++++||||++ . ..+++.+||| |||||+++.++++.+. ++|+++|+|+.. .+
T Consensus 287 a~a~~lgi~~~~i~~~L~~f~g~~gR~e~v~~~-~~~g~~vi~D-~aHnp~~~~a~l~al~~~~~~~~i~~I~g~g~~~r 364 (469)
T 1j6u_A 287 ALFDSLGYDLAPVLEALEEFRGVHRRFSIAFHD-PETNIYVIDD-YAHTPDEIRNLLQTAKEVFENEKIVVIFQPHRYSR 364 (469)
T ss_dssp HHHHHTTCCHHHHHHHHHHCCCCTTSSEEEEEE-TTTTEEEEEE-CCCSHHHHHHHHHHHHHHCSSSEEEEEECCBC---
T ss_pred HHHHHcCCCHHHHHHHHHhCCCCCCCcEEEccc-ccCCcEEEEe-CCCCHHHHHHHHHHHHHhcCCCcEEEEEcCCCCCc
Confidence 899999999999999999999999999998 4 3567899999 5999999999877663 367888887422 12
Q ss_pred CCCCCCcchHhhhhhccCccEEEEe-----------CCChHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEE
Q 015421 306 LNGQESNGFEKLIEPLNHHRCVITF-----------GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIV 374 (407)
Q Consensus 306 ~~~~~~~~~~~~~~~l~~~~~v~~~-----------g~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL 374 (407)
+. ..+.++...+...|.++++ |..++.+.+.++..+ ..+..+++++++++.+ .+++||+||
T Consensus 365 ~~----~~~~~l~~~~~~~d~vil~~~~~~~e~p~~g~~~~~l~~~~~~~~--~~~~~~~~~~~a~~~~--~a~~gD~VL 436 (469)
T 1j6u_A 365 LE----REDGNFAKALQLADEVVVTEVYDAFEEKKNGISGKMIWDSLKSLG--KEAYFVEKLPELEKVI--SVSENTVFL 436 (469)
T ss_dssp ---------CHHHHHHTTSSEEEECCCBC---------CHHHHHHHHHHTT--CCEEECCSGGGHHHHC--CCCSSEEEE
T ss_pred cH----HHHHHHHHHHhcCCEEEEcccCCCCCCcccCcCHHHHHHHHHhcC--CcEEEECCHHHHHHHh--hCCCCCEEE
Confidence 11 1345566665557888886 445677777776543 2345667899998876 788999999
Q ss_pred EcCCCCCcccc
Q 015421 375 LSPGCASFDEF 385 (407)
Q Consensus 375 ~~~G~~s~~~~ 385 (407)
++ |++||+.+
T Consensus 437 v~-g~Gs~~~~ 446 (469)
T 1j6u_A 437 FV-GAGDIIYS 446 (469)
T ss_dssp EE-CSSTHHHH
T ss_pred EE-CCCchhHH
Confidence 86 77887764
No 10
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=4.8e-52 Score=419.55 Aligned_cols=350 Identities=19% Similarity=0.149 Sum_probs=251.5
Q ss_pred CCCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccchhhhhhc-ccCCC-----------CCCCCcEEEEEecc
Q 015421 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC-IALPS-----------SKPKFQVAVVEVSS 108 (407)
Q Consensus 41 ~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~-~~~~~-----------~~~~~~~~V~E~g~ 108 (407)
.+.++|+||||||||||++||+++|+..|+++++.|+.+.++....+.. .+++. ...+++++|+|+|+
T Consensus 106 ~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gs~~~~i~~~~~~~~~t~~~~~~l~~~l~~~~~~~~d~~VlEvgs 185 (498)
T 1e8c_A 106 DNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSS 185 (498)
T ss_dssp GSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTEEEETTCCBCCSSSSCCHHHHHHHHHHHHHTTCCEEEEECCH
T ss_pred ccCeEEEEeCCcChHHHHHHHHHHHHhCCCCEEEECCCCcccCCeeeecCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCC
Confidence 3578999999999999999999999999999887777665544322210 11110 14567899999997
Q ss_pred cccc--cCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccCCCceEEEeCCChhhHHHHhcccc---ceEEee
Q 015421 109 YQME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRF---NLAWIG 183 (407)
Q Consensus 109 ~~l~--~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~---~~~~~~ 183 (407)
+.++ .+.. ++|+++|||||+.||+++|||+|+|+++|++|++. ++++.+|+|.|||....+...... ++++|+
T Consensus 186 ~~l~~~rl~~-~~p~vaViTNI~~DHld~~gt~e~ia~aK~~i~~~-~~~~~~V~n~dd~~~~~~~~~~~~~~~~v~~~g 263 (498)
T 1e8c_A 186 HGLVQHRVAA-LKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDH 263 (498)
T ss_dssp HHHHTTTTTT-CBCSEEEECCCCSCCHHHHSSHHHHHHHHHHHHHT-SBCCEEEEETTSHHHHHHHTTCTTCEEEESSSC
T ss_pred chhhcccccc-cCCCEEEEeCCChhhhhccCCHHHHHHHHHHHhcc-CCCCeEEEECCCHHHHHHHHhhhccCCcEEEEe
Confidence 6654 3333 68999999999999999999999999999999987 567899999999998887654433 566666
Q ss_pred cCCCc---cccc-----ccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCC
Q 015421 184 AFPGV---KIDT-----EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255 (407)
Q Consensus 184 ~~~~~---~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~ 255 (407)
..... .+.. ......|.+...+... .+.++++|.||++|+++|+ +++..+|++++.|.++|++|+++
T Consensus 264 ~~~~~~~~d~~~~~~~~~~~g~~f~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~~~~lGi~~~~i~~~L~~~~~~ 338 (498)
T 1e8c_A 264 INPNCHGRWLKATEVNYHDSGATIRFSSSWGDG---EIESHLMGAFNVSNLLLAL--ATLLALGYPLADLLKTAARLQPV 338 (498)
T ss_dssp CCTTTCSEEEEEEEEEECSSCEEEEEEETTCCE---EEEECSCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHGGGCCCC
T ss_pred cCCCCCcCCEEEEEEEEcCCceEEEEEECCceE---EEEecCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCC
Confidence 43211 1110 0011122222111111 2468999999999999999 88999999999999999999999
Q ss_pred CCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC---CCcEEEEECCCCCCCCCCCCcchHh-hhhhcc-CccEEEEe
Q 015421 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEK-LIEPLN-HHRCVITF 330 (407)
Q Consensus 256 ~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~V~g~~~~~~~~~~~~~~~~-~~~~l~-~~~~v~~~ 330 (407)
+||||++. ..+++.+|+| |||||+|++++++.+. ++|+++|||+..+++. .+++ +++... ..|.++++
T Consensus 339 ~gR~e~v~-~~~~~~vi~D-yahnP~s~~a~l~~l~~~~~~r~i~V~G~g~dr~~-----~~~~~~~~~~~~~~d~vi~~ 411 (498)
T 1e8c_A 339 CGRMEVFT-APGKPTVVVD-YAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDK-----GKRPLMGAIAEEFADVAVVT 411 (498)
T ss_dssp TTSSEEEC-CTTSCEEEEE-CCCSHHHHHHHHHHHHHTCSSCEEEEECCCSSSCS-----THHHHHHHHHHHHCSEEEEC
T ss_pred CCceEEEE-cCCCCEEEEE-CCCCHHHHHHHHHHHHhhCCCCEEEEECCCCCcch-----hHHHHHHHHHHhCCCEEEEc
Confidence 99999995 2457788999 6999999999988774 4689999997655432 1332 333322 26888887
Q ss_pred CCC-----hHHHHHHHHhCCCCc--cccccccHHHHHHHHHHhcCCCCEEEEc-CCCCCcccccC---hhhhhHHHHHHH
Q 015421 331 GYS-----GVLIWKTLVNNGLSI--PCFAVANMKDAVNHARRMATNGDAIVLS-PGCASFDEFRN---FEHRGMVFQELA 399 (407)
Q Consensus 331 g~~-----~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~a~~~~~~gd~vL~~-~G~~s~~~~~~---~~~r~~~~~~~~ 399 (407)
+.. +..+.+.+.. +... .+.+++|+++|++.+.+.+++||+||++ +|+.+++.+++ .++.-..-++++
T Consensus 412 ~~~~r~e~~~~i~~~~~~-~~~~~~~~~~~~~~~~ai~~a~~~a~~gd~VLv~GkG~~~~q~~~~~~~~f~d~~~~~~~l 490 (498)
T 1e8c_A 412 DDNPRTEEPRAIINDILA-GMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVARLL 490 (498)
T ss_dssp CSCCBTSCHHHHHHHHHT-TSSCGGGSEECSCHHHHHHHHHHHSCTTCEEEEESCTTCCEEEETTEEEECCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHh-hccccCceEEECCHHHHHHHHHHhCCCCCEEEEecCCCcceEEECCEEecCChHHHHHHHH
Confidence 543 4666666543 2211 3456789999999999999999999986 67777787754 123333344455
Q ss_pred hhhccc
Q 015421 400 FFSKHD 405 (407)
Q Consensus 400 ~~l~~~ 405 (407)
+.+...
T Consensus 491 ~~~~~~ 496 (498)
T 1e8c_A 491 GVIARS 496 (498)
T ss_dssp TSCCSC
T ss_pred HhhccC
Confidence 555443
No 11
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=100.00 E-value=3.7e-51 Score=415.79 Aligned_cols=349 Identities=19% Similarity=0.200 Sum_probs=249.2
Q ss_pred CCcEEEEecCCChHhHHHHHHHHHHhcCCceeecccCCccchhhhhhcc-cCC-----------CCCCCCcEEEEEeccc
Q 015421 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCI-ALP-----------SSKPKFQVAVVEVSSY 109 (407)
Q Consensus 42 ~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~~-~~~-----------~~~~~~~~~V~E~g~~ 109 (407)
++++|+||||||||||++||+++|+..|+++++.|+.+..+....+... +++ ..+.+++++|+|+|++
T Consensus 145 ~~~vI~VTGTnGKTTT~~ml~~iL~~~G~~~g~~gs~~~~i~~~~~~~~~tt~e~~~l~~~l~~~~~~~~d~~VlEvgs~ 224 (535)
T 2wtz_A 145 RLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSH 224 (535)
T ss_dssp SSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEESSSCEEETTEEECCSSSSCCHHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred cceEEEeeCCCChHHHHHHHHHHHHHCCCCEEEECCcceeECCEecccCCccCcHHHHHHHHHHHHhCCCCEEEEECCCc
Confidence 5789999999999999999999999999999887876655443221110 111 0135789999999976
Q ss_pred ccc--cCCccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcccC--CCceEEEeCCChhhHHHHhccccceEEeecC
Q 015421 110 QME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMV--NTKLGLLPFGNQHLNEAIKGHRFNLAWIGAF 185 (407)
Q Consensus 110 ~l~--~~~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~~~--~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~ 185 (407)
.++ .+.. ++|+++|||||+.||+++|||+|+|+++|++|++.++ +++.+|+|.|||....+..... ++++|+..
T Consensus 225 ~l~~~rl~~-~~p~vaViTNI~~DHld~~gs~e~ia~aK~~i~~~~~~~~~g~~Vln~Dd~~~~~~~~~~~-~v~~~g~~ 302 (535)
T 2wtz_A 225 ALALGRVDG-TRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAA-DAITVSAA 302 (535)
T ss_dssp HHHTTTTTT-CCEEEEEECCCCSCCTTTSSSHHHHHHHHHTTTCTTSTTCCSEEEEECSSHHHHHHHHHHS-SCEEEESS
T ss_pred ccccccccc-CCcCEEEEcCCChHHhhhcCCHHHHHHHHHHHhccccccCCCeEEEECCCHHHHHHHHhcC-CEEEEecC
Confidence 553 3333 6899999999999999999999999999999999764 5689999999998877765433 67888864
Q ss_pred CC---cccc---cc-cccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCc
Q 015421 186 PG---VKID---TE-AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258 (407)
Q Consensus 186 ~~---~~~~---~~-~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR 258 (407)
.. +... .. .....|.+...+.. ...+.++++|.||++|+++|+ +++..+|++.+.|.++|++|+ ++||
T Consensus 303 ~~~~d~~~~~i~~~~~~g~~f~~~~~~~~--~~~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~L~~~~-~~gR 377 (535)
T 2wtz_A 303 DRPAHWRATDVAPTDAGGQQFTAIDPAGV--GHHIGIRLPGRYNVANCLVAL--AILDTVGVSPEQAVPGLREIR-VPGR 377 (535)
T ss_dssp SSCCSEEEEEEEEETTTEEEEEEECTTSC--EEEEEESCCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHHTTCC-CTTS
T ss_pred CCcCcEEEEEEEEcCCCCeEEEEEeCCce--EEEEEeCCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCC-CCCc
Confidence 32 2111 00 11122333221111 012478999999999999999 889999999999999999999 9999
Q ss_pred eeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC--CCcEEEEECCCCCCCCCCCCcchHhhhhhcc-CccEEEEeCCCh-
Q 015421 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQAKVLNGQESNGFEKLIEPLN-HHRCVITFGYSG- 334 (407)
Q Consensus 259 ~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~--~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~-~~~~v~~~g~~~- 334 (407)
||++. ..++..+|+| |||||+|++++++.+. ++|+++|||++.+++.. .+..+++... ..|.+++++..+
T Consensus 378 ~e~v~-~~~~~~viiD-yahNP~s~~aal~~l~~~~~r~i~V~G~~gdr~~~----~~~~~~~~a~~~~d~vi~~~~~~r 451 (535)
T 2wtz_A 378 LEQID-RGQGFLALVD-YAHKPEALRSVLTTLAHPDRRLAVVFGAGGDRDPG----KRAPMGRIAAQLADLVVVTDDNPR 451 (535)
T ss_dssp SEECC-SSCSSEEEEE-CCCSHHHHHHHHHTTCCSSSCEEEEECCCTTSCGG----GHHHHHHHHHHHCSEEEECCSCCT
T ss_pred eEEEE-cCCCcEEEEE-CCCCHHHHHHHHHHhhCCCCcEEEEECCCCccchh----hHHHHHHHHHhcCCEEEEcCCCCC
Confidence 99995 2447767778 7999999999999885 46899999988665321 2223333332 268888886543
Q ss_pred ----HHHHHHHHhC-C-CC--ccccccccHHHHHHHHHHhcCCCCEEEEc-CCCCCcccccC---hhhhhHHHHHHHhhh
Q 015421 335 ----VLIWKTLVNN-G-LS--IPCFAVANMKDAVNHARRMATNGDAIVLS-PGCASFDEFRN---FEHRGMVFQELAFFS 402 (407)
Q Consensus 335 ----~~~~~~l~~~-~-~~--~~~~~~~~~~~a~~~a~~~~~~gd~vL~~-~G~~s~~~~~~---~~~r~~~~~~~~~~l 402 (407)
..+.+.+... . .. ..+..++|+++|++.+.+.+++||+||++ +|+..++.++. .++.-..-+++++.+
T Consensus 452 ~e~~~~i~~~i~~g~~~~~~~~~~~~~~d~~~Ai~~a~~~a~~gD~VLv~GsGhe~~q~~~~~~~~f~d~~~~~~~l~~~ 531 (535)
T 2wtz_A 452 DEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQRGGGRVRPFDDRVELAAALEAL 531 (535)
T ss_dssp TSCHHHHHHHHHHHHTTCC-CCEEEECCSHHHHHHHHHHHCCTTCEEEEESCTTCCCEECC-CEECCCTTHHHHHHHHSS
T ss_pred CCCHHHHHHHHHhhhhhcCCCCcEEEECCHHHHHHHHHHhCCCCCEEEEEeCCCcceEEECCEeecCChHHHHHHHHHhh
Confidence 5555544221 0 00 13456789999999999999999999997 56666666654 223334444555544
Q ss_pred c
Q 015421 403 K 403 (407)
Q Consensus 403 ~ 403 (407)
+
T Consensus 532 ~ 532 (535)
T 2wtz_A 532 E 532 (535)
T ss_dssp C
T ss_pred h
Confidence 3
No 12
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=100.00 E-value=2.8e-47 Score=378.23 Aligned_cols=329 Identities=18% Similarity=0.163 Sum_probs=233.6
Q ss_pred eeeHHHHHHhhC---CCCCcEEEEecCCChHhHHHHHHHHHHhcCCcee--ecccC----------Cccchhhhhhc---
Q 015421 28 VMSELDFAAQVI---PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF--VGGNL----------GNPLSEAAFHC--- 89 (407)
Q Consensus 28 ~l~~~~~~~~~~---~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~--~~g~~----------g~~~~~~~~~~--- 89 (407)
-|.|+..+.+.+ +++.++|+||||||||||++||+++|+++|++++ +++++ |.+++...+..
T Consensus 34 gL~r~~~ll~~lg~p~~~~~vI~VtGTNGKgSt~~~l~~iL~~~G~~vg~~tSphl~~~neri~i~g~~i~~~~~~~~~~ 113 (437)
T 3nrs_A 34 GLERVKQVAERLDLLKPAPKIFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLLRYTERVRIQGQELSEAEHSHSFA 113 (437)
T ss_dssp CCHHHHHHHHHTTCSCSSSEEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECCCCSSCGGGGEEETTEECCHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCccccCCEEEEECCcChHHHHHHHHHHHHHCCCcEEEECCCCcCCcceEEEECCEECCHHHHHHHHH
Confidence 366777666554 3578999999999999999999999999999984 34332 33333221100
Q ss_pred --------c-cC-----------CCCCCCCcEEEEEec-ccccccCCccccceEEEEecCChhhhccCC-CHHHHHHHHH
Q 015421 90 --------I-AL-----------PSSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKC 147 (407)
Q Consensus 90 --------~-~~-----------~~~~~~~~~~V~E~g-~~~l~~~~~~~~p~i~viTni~~dHl~~~~-t~e~i~~~K~ 147 (407)
. .+ .+.+.++|++|+|+| +|++|.++. ++|+++|||||+.||+++|| |+|+|+++|+
T Consensus 114 ~v~~~~~~~~~T~fe~~t~~a~~~f~~~~~d~~VlEvGlggrld~tni-i~p~vaVITnI~~DHld~lG~t~e~ia~~Ka 192 (437)
T 3nrs_A 114 QIEAGRGDISLTYFEFGTLSALQLFKQAKLDVVILEVGLGGRLDATNI-VDSDVAAITSIALDHTDWLGYDRESIGREKA 192 (437)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHHHTCCSEEEEECSSSSTTSGGGG-SCCSEEEECCCCCCBCCCTTCSHHHHHHHHG
T ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccc-cCCCEEEEcCccHHHHHHhCCcHHHHHHHHH
Confidence 0 00 011457899999999 688998776 79999999999999999999 9999999999
Q ss_pred HhhcccCCCceEEEeCCChh--hHHHHhccccceEEeecCCCcccc--------cccccceeEeccCCeeeeeeecccCC
Q 015421 148 HLFSHMVNTKLGLLPFGNQH--LNEAIKGHRFNLAWIGAFPGVKID--------TEAKTASFEVPAVGVVSQLQLHNMKV 217 (407)
Q Consensus 148 ~i~~~~~~~~~~v~n~dd~~--~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~ 217 (407)
+|++ +++.+|+|.||+. +.+.+...+.++++++.+..+... .......+.+...+. . ...+++
T Consensus 193 ~I~~---~~~~~V~~~d~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~l~l 265 (437)
T 3nrs_A 193 GVFR---GGKPAVVGEPDMPQSIADVAAELGAQLYRRDVAWKFSQQEPFDQQEPVDQQINGWHWQCGER--Q--LTGLPV 265 (437)
T ss_dssp GGCC---TTSEEEECCSSCCHHHHHHHHHHTCEEEEBTTTEEEEC--------------CCEEEEETTE--E--EEEECC
T ss_pred hhcc---CCCeEEECCccHHHHHHHHHHHcCCcEEEecccceeeecccccccccccccCceEEEecCCc--c--eeccCC
Confidence 9998 5789999988764 444455556677777754211111 000011222221111 1 123455
Q ss_pred C--ChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC----
Q 015421 218 M--GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---- 291 (407)
Q Consensus 218 ~--G~~~~~Nal~A~~~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---- 291 (407)
+ |.||+.|+++|+ ++ ..+|++.+.|.++|++|+ ||||||++. .++ .+|+| |||||+|++++++.+.
T Consensus 266 ~~~~~~Na~~Alaa~--~~-~~lgi~~~~i~~gL~~~~-~pGR~e~v~--~~~-~vi~D-~AHNp~a~~all~~l~~~~~ 337 (437)
T 3nrs_A 266 PNVPLANAATALAVL--HY-SELPLSDEAIRQGLQAAS-LPGRFQVVS--EQP-LLILD-VAHNPHAARYLVNRLAQVIN 337 (437)
T ss_dssp CSSCHHHHHHHHHHH--HH-HTCCCCHHHHHHHHHHCC-CTTSSEEEE--TTT-EEEEC-CCCSHHHHHHHHHHHHHTC-
T ss_pred cchhHHHHHHHHHHH--HH-hCCCCCHHHHHHHHHhCC-CCCceEEEe--cCC-eEEEE-CCCCHHHHHHHHHHHHhhcc
Confidence 5 888888888877 44 568999999999999999 999999994 344 57777 5999999999887664
Q ss_pred ------CCcEEEEECCCCCCCCCCCCcchHhhhhhccC-ccEEEEeCCC------hHHHHHHHHhCCCCccccccccHHH
Q 015421 292 ------GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVITFGYS------GVLIWKTLVNNGLSIPCFAVANMKD 358 (407)
Q Consensus 292 ------~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~-~~~v~~~g~~------~~~~~~~l~~~~~~~~~~~~~~~~~ 358 (407)
++|+++|+|++.++ .++++++.+.. .+.+++++.+ ++.+.+.+.. . ..++|+++
T Consensus 338 ~~~~~~~~r~i~V~G~~~dk-------d~~~~~~~l~~~~~~v~~~~~~~~r~~~~~~l~~~~~~-----~-~~~~d~~~ 404 (437)
T 3nrs_A 338 PVNASKQGKVRAVVGMLSDK-------DIAGTLACLSERVDEWYCAPLEGPRGASAGQLAEHLVS-----A-RQFSDVET 404 (437)
T ss_dssp -------CCEEEEECCBTTB-------CHHHHHHHHTTTCCEEEECCCSSTTBCCHHHHHTTCSS-----C-EECSSHHH
T ss_pred hhhhcCCCCEEEEEeCCCCC-------CHHHHHHHHHhcCCEEEEeCCCCCCCCCHHHHHHHHhh-----C-CCcCCHHH
Confidence 46899999987654 25667776654 6778887654 2344433221 1 46789999
Q ss_pred HHHHHHHhcCCCCEEEEcCCCCCcccccCh
Q 015421 359 AVNHARRMATNGDAIVLSPGCASFDEFRNF 388 (407)
Q Consensus 359 a~~~a~~~~~~gd~vL~~~G~~s~~~~~~~ 388 (407)
|++.+.+.+++||+||++ |||+.+..+
T Consensus 405 Ai~~a~~~a~~~D~VLv~---GS~~~v~~~ 431 (437)
T 3nrs_A 405 AWRQAMQDADTQDVVIVC---GSFHTVAHV 431 (437)
T ss_dssp HHHHHHHHCCTTCEEEEE---SSHHHHHHH
T ss_pred HHHHHHHhcCCCCeEEEE---ehHHHHHHH
Confidence 999999999999999996 577665544
No 13
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=100.00 E-value=1e-47 Score=381.22 Aligned_cols=330 Identities=14% Similarity=0.104 Sum_probs=229.0
Q ss_pred eeeHHHHHHhhC---CCCCcEEEEecCCChHhHHHHHHHHHHhcCCceeeccc------------CCccchhhhhh----
Q 015421 28 VMSELDFAAQVI---PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAFH---- 88 (407)
Q Consensus 28 ~l~~~~~~~~~~---~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~------------~g~~~~~~~~~---- 88 (407)
.+.++..+.+.+ +++.++|+||||||||||++||+++|+..|++++..++ .|.+++...+.
T Consensus 21 ~l~~~~~~l~~lg~p~~~~~vI~VtGTnGKtTT~~~l~~iL~~~G~~vg~~~sp~l~~~~eri~i~g~~i~~~~~~~~~~ 100 (428)
T 1jbw_A 21 DHRRILTLLHALGNPQQQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMIDHEPIPDAALVNAVA 100 (428)
T ss_dssp SCHHHHHHHHHTTCGGGSSCEEEEECSSCHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCchhcCcEEEEECCCChHHHHHHHHHHHHHCCCCEEEEeCCccCccceEEEECCEECCHHHHHHHHH
Confidence 345555444333 24678999999999999999999999999999864332 23333221110
Q ss_pred ---------------c-ccCC----------CCCCCCcEEEEEecc-cccccCCccccceEEEEecCChhhhccCC-CHH
Q 015421 89 ---------------C-IALP----------SSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMK 140 (407)
Q Consensus 89 ---------------~-~~~~----------~~~~~~~~~V~E~g~-~~l~~~~~~~~p~i~viTni~~dHl~~~~-t~e 140 (407)
. .+.. +.+.++|++|+|+|+ |++|.++. ++|+++|||||+.||+++|| |+|
T Consensus 101 ~~~~~~~~ig~~~~~~~~t~~e~~t~~a~~~f~~~~~d~~VlEvg~~g~~d~t~~-~~p~vaviTnI~~DHld~~g~t~e 179 (428)
T 1jbw_A 101 FVRAALERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVGIGGDTDSTNV-ITPVVSVLTEVALDHQKLLGHTIT 179 (428)
T ss_dssp HHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTSTTCS-CCCSEEEECCCCSCCHHHHCSSHH
T ss_pred HHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHhCCCCEEEEecCCCcccccccc-CCCCEEEECcCcHhhhhhhCCCHH
Confidence 0 0000 014578999999995 58888776 79999999999999999999 999
Q ss_pred HHHHHHHHhhcccCCCceEEEeCCChhhHHHHhc----cccceEEeecCCCcccccc---cccceeEeccCCeeeeeeec
Q 015421 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKIDTE---AKTASFEVPAVGVVSQLQLH 213 (407)
Q Consensus 141 ~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 213 (407)
+|+++|+++++ +++.+|+|.||+.+..+... .+.++++|+.+ +..... .....|.+...+.. +..+
T Consensus 180 ~ia~~K~~i~~---~~~~~v~~~dd~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 252 (428)
T 1jbw_A 180 AIAKHKAGIIK---RGIPVVTGNLVPDAAAVVAAKVATTGSQWLRFDRD--FSVPKAKLHGWGQRFTYEDQDGR--ISDL 252 (428)
T ss_dssp HHHHHHGGGCC---TTCCEEECCCCHHHHHHHHHHHHHHTCCEEEBTTT--EEEEEEEECSSSEEEEEEETTEE--EEEE
T ss_pred HHHHHHhcccc---CCceEEEeCCCHHHHHHHHHHHHHcCCcEEEeCcc--ceeeccccccCCceEEEecCCcc--cccc
Confidence 99999999997 57899999999977665432 24467777642 211100 01112333222111 1134
Q ss_pred ccCCCChhHHHHHHHHHHHHHHHHc-C-----CCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHH
Q 015421 214 NMKVMGRHNYHNAAVAALSVLGLDI-G-----VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGL 287 (407)
Q Consensus 214 ~l~~~G~~~~~Nal~A~~~a~~~~l-g-----i~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al 287 (407)
.++++|.||++|+++|+ +++..+ | ++.+.|.++|++|+ +|||||++. .++..+|| ++|||+|+++++
T Consensus 253 ~l~l~G~hn~~Na~aAi--a~~~~l~g~~~~~i~~~~i~~~L~~~~-~~gR~e~~~--~~~~viiD--~AhNp~s~~a~l 325 (428)
T 1jbw_A 253 EVPLVGDYQQRNMAIAI--QTAKVYAKQTEWPLTPQNIRQGLAASH-WPARLEKIS--DTPLIVID--GAHNPDGINGLI 325 (428)
T ss_dssp EESCCSTHHHHHHHHHH--HHHHHHHHHTTCCCCHHHHHHHHHTCC-CTTSSEEEE--TTTTEEEE--CCCSHHHHHHHH
T ss_pred ccCCCChhHHHHHHHHH--HHHHHHhhccCCCCCHHHHHHHHHhCc-CCCceEEec--CCCcEEEE--CCcCHHHHHHHH
Confidence 78999999999999999 788888 8 99999999999999 999999995 35667776 478999999999
Q ss_pred hccC---CCcEEEEECCCCCCCCCCCCcchHhhhhhccC-ccEEEEeCC-C-hHHH-HHHHHhCCCCccccccccHHHHH
Q 015421 288 MDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVITFGY-S-GVLI-WKTLVNNGLSIPCFAVANMKDAV 360 (407)
Q Consensus 288 ~~~~---~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~-~~~v~~~g~-~-~~~~-~~~l~~~~~~~~~~~~~~~~~a~ 360 (407)
+.+. ++|+++|+|++.++ .+.++++.+.+ .|.++++++ + ++.. .+.+... ..+..++|+++|+
T Consensus 326 ~~l~~~~~~~~i~V~g~~~~k-------d~~~~~~~~~~~~d~vi~~~~~~~~r~~~~~~l~~~---~~~~~~~~~~~ai 395 (428)
T 1jbw_A 326 TALKQLFSQPITVIAGILADK-------DYAAMADRLTAAFSTVYLVPVPGTPRALPEAGYEAL---HEGRLKDSWQEAL 395 (428)
T ss_dssp HHHHHHCSSCCEEEEECSSST-------THHHHHHHHHHHCSEEEECCCSCC------------------CBCSSHHHHH
T ss_pred HHHHHhcCCCEEEEEeeCCCC-------CHHHHHHHHhhhCCEEEEECCCCCCCCCCHHHHHhh---hCCeecCCHHHHH
Confidence 8874 36889999988543 25566665543 688888443 2 2211 1112111 1244568999999
Q ss_pred HHHHHhcCCCCEEEEcCCCCCccccc
Q 015421 361 NHARRMATNGDAIVLSPGCASFDEFR 386 (407)
Q Consensus 361 ~~a~~~~~~gd~vL~~~G~~s~~~~~ 386 (407)
+.+.+.+ +||+||++ ||++.+.
T Consensus 396 ~~a~~~~-~~d~vLv~---GS~~~~~ 417 (428)
T 1jbw_A 396 AASLNDV-PDQPIVIT---GSLYLAS 417 (428)
T ss_dssp HHHHHHC-TTSCEEEE---ESHHHHH
T ss_pred HHHHhhC-CCCeEEEE---eeHHHHH
Confidence 9999888 99999996 5565554
No 14
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=100.00 E-value=5e-47 Score=380.73 Aligned_cols=340 Identities=17% Similarity=0.185 Sum_probs=239.9
Q ss_pred CceeeHHHHHHhhC---CCCCcEEEEecCCChHhHHHHHHHHHHhcCCceee--cccC----------Cccchhhhhhc-
Q 015421 26 KRVMSELDFAAQVI---PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFV--GGNL----------GNPLSEAAFHC- 89 (407)
Q Consensus 26 ~~~l~~~~~~~~~~---~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~--~g~~----------g~~~~~~~~~~- 89 (407)
.+.|.|++.+.+.+ +++.++|+||||||||||++||+++|+++|++++. ++++ |.+++...+..
T Consensus 44 ~~~L~r~~~ll~~lg~p~~~~~vI~VtGTNGKtST~~~l~~iL~~~G~~vG~~tSp~l~~~~eri~i~G~~i~~~~~~~~ 123 (487)
T 2vos_A 44 DPSLTRISALMDLLGSPQRSYPSIHIAGTNGKTSVARMVDALVTALHRRTGRTTSPHLQSPVERISIDGKPISPAQYVAT 123 (487)
T ss_dssp CTTCHHHHHHHHHTTCGGGSSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCchhcCeEEEEeCCCCcHHHHHHHHHHHHHcCCCeEEECCCCcCcccceEEECCEECCHHHHHHH
Confidence 34678888877655 24678999999999999999999999999999843 2221 22222111000
Q ss_pred -------------------------ccC----------CCCCCCCcEEEEEecc-cccccCCccccceEEEEecCChhhh
Q 015421 90 -------------------------IAL----------PSSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDHL 133 (407)
Q Consensus 90 -------------------------~~~----------~~~~~~~~~~V~E~g~-~~l~~~~~~~~p~i~viTni~~dHl 133 (407)
.+. .+.+.++|++|+|+|+ +.+|.++. ++|+++|||||+.||+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~fe~~t~~a~~~f~~~~~d~~VlEvg~gg~~d~tn~-i~p~vaVITnI~~DHl 202 (487)
T 2vos_A 124 YREIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAFADAPVDVAVVEVGMGGRWDATNV-INAPVAVITPISIDHV 202 (487)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTSTTCS-SCCSEEEECCCCCCBC
T ss_pred HHHHHHHHhhhhhccccccccCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccc-cCCCEEEECCcchhhh
Confidence 000 0014578999999996 57887765 7999999999999999
Q ss_pred ccCC-CHHHHHHHHHHhhccc---CCCceEEEeCCChhhHHHHh----ccccceEEeecCCCccccc---ccccceeEec
Q 015421 134 ERHK-TMKNYALTKCHLFSHM---VNTKLGLLPFGNQHLNEAIK----GHRFNLAWIGAFPGVKIDT---EAKTASFEVP 202 (407)
Q Consensus 134 ~~~~-t~e~i~~~K~~i~~~~---~~~~~~v~n~dd~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 202 (407)
++|| |+|+|+++|++|++.+ ++++.+|+|.|||.+..+.. ....++++++.+ +.... ......|.+.
T Consensus 203 d~lG~t~e~ia~~Ka~i~~~~~~~k~~~~~V~~~dd~~~~~~~~~~a~~~~~~~~~~g~d--~~~~~~~~~~~g~~~~~~ 280 (487)
T 2vos_A 203 DYLGADIAGIAGEKAGIITRAPDGSPDTVAVIGRQVPKVMEVLLAESVRADASVAREDSE--FAVLRRQIAVGGQVLQLQ 280 (487)
T ss_dssp SCSSCCHHHHHHHHHTTCCCCC--CCCCEEEECCCCHHHHHHHHHHHHHTTCEEEEBTTT--BEEEEEEEETTEEEEEEE
T ss_pred hhhCCcHHHHHHHHHHHhhcccccCCCCEEEEeCCCHHHHHHHHHHHHHcCCeEEEecCc--eEEEeeccccCCceEEEe
Confidence 9999 9999999999999764 57889999999997655432 224566666542 21110 0011123332
Q ss_pred cCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHc-------CCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcC
Q 015421 203 AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI-------GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDS 275 (407)
Q Consensus 203 ~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~l-------gi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~ 275 (407)
..+.. +..+.++++|.||++|+++|+ +++..+ |++.+.|.++|++|+ +|||||++. .+ ..+|+|
T Consensus 281 ~~~~~--~~~~~l~l~G~hn~~Na~aAi--aa~~~l~~~~~~~gi~~~~i~~gL~~~~-~pGR~e~v~--~~-~~vi~D- 351 (487)
T 2vos_A 281 GLGGV--YSDIYLPLHGEHQAHNAVLAL--ASVEAFFGAGAQRQLDGDAVRAGFAAVT-SPGRLERMR--SA-PTVFID- 351 (487)
T ss_dssp ETTEE--EEEEEECCCSHHHHHHHHHHH--HHHHHHTTC----CCCHHHHHHHHHTCC-CTTSSEEEE--TT-TEEEEC-
T ss_pred cCCcc--cceeecCCCCHHHHHHHHHHH--HHHHHHhhccccCCCCHHHHHHHHHhCc-CCCceEEEc--CC-CeEEEE-
Confidence 21111 113468999999999999999 777776 799999999999999 899999994 34 466777
Q ss_pred CCCCHHHHHHHHhccC----CCcEEEEECCCCCCCCCCCCcchHhhhhhccC-ccEEEEeCC------ChHHHHHHHHh-
Q 015421 276 KATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVITFGY------SGVLIWKTLVN- 343 (407)
Q Consensus 276 ~a~np~s~~~al~~~~----~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~-~~~v~~~g~------~~~~~~~~l~~- 343 (407)
++|||+|++++++.+. .+|+++|+|++.+++ ++.+.+.+.+ .|.+++++. ++..+.+.++.
T Consensus 352 ~AHNp~a~~a~l~~l~~~~~~~~~i~V~G~~~dkd-------~~~~~~~l~~~~d~vilt~~~~~r~~~~~~l~~~~~~~ 424 (487)
T 2vos_A 352 AAHNPAGASALAQTLAHEFDFRFLVGVLSVLGDKD-------VDGILAALEPVFDSVVVTHNGSPRALDVEALALAAGER 424 (487)
T ss_dssp CCCSHHHHHHHHHHHHHSCCCSEEEEEECCBTTBC-------HHHHHHHHTTTCSEEEECCCSCTTBCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCC-------HHHHHHHHHhhCCEEEEeCCCCcCCCCHHHHHHHHHhh
Confidence 5999999999988763 368899999998763 2345554443 578888753 24456655433
Q ss_pred CCCCccccccccHHHHHHHHHHhcCCC-------------CEEEEcCCCCCcccccCh
Q 015421 344 NGLSIPCFAVANMKDAVNHARRMATNG-------------DAIVLSPGCASFDEFRNF 388 (407)
Q Consensus 344 ~~~~~~~~~~~~~~~a~~~a~~~~~~g-------------d~vL~~~G~~s~~~~~~~ 388 (407)
.+. ..+..++++++|++.+.+.++++ |+||++ |||+.+..+
T Consensus 425 ~~~-~~~~~~~~~~~Ai~~a~~~a~~~~~~~~~~~~~~~~d~vlv~---GS~y~vg~~ 478 (487)
T 2vos_A 425 FGP-DRVRTAENLRDAIDVATSLVDDAAADPDVAGDAFSRTGIVIT---GSVVTAGAA 478 (487)
T ss_dssp HCG-GGEEECSSHHHHHHHHHHHHHHHHTCTTTTC----CEEEEEE---SSHHHHHHH
T ss_pred cCC-CceEecCCHHHHHHHHHHhcccCcccccccccccCCCEEEEE---eeHHHHHHH
Confidence 111 13456789999999998877665 889885 677766544
No 15
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=100.00 E-value=5.6e-47 Score=376.63 Aligned_cols=316 Identities=16% Similarity=0.142 Sum_probs=223.0
Q ss_pred CCCcEEEEecCCChHhHHHHHHHHHHhcCCceeeccc------------CCccchhhhhh-----------c--------
Q 015421 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAFH-----------C-------- 89 (407)
Q Consensus 41 ~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~~~g~------------~g~~~~~~~~~-----------~-------- 89 (407)
++.++|+||||||||||++||+++|+..|++++..++ .|.|++...+. .
T Consensus 50 ~~~~vI~VTGTnGKtTT~~~l~~iL~~~G~~vg~~~Sphl~~~neri~inG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (442)
T 1o5z_A 50 LEYKTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVVKIYETMEPILNELDKEEIFS 129 (442)
T ss_dssp GSSEEEEEECSSSHHHHHHHHHHHHHHHTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHTTSTTTC
T ss_pred hcCCEEEEECCcCHHHHHHHHHHHHHHCCCCEEEECCCCcCccceeEEECCEECCHHHHHHHHHHHHHHHhhhcccccCC
Confidence 4678999999999999999999999999999864322 15554432110 0
Q ss_pred ccCC----------CCCCCCcEEEEEec-ccccccCCccccceEEEEecCChhhhccCC-CHHHHHHHHHHhhcccCCCc
Q 015421 90 IALP----------SSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTK 157 (407)
Q Consensus 90 ~~~~----------~~~~~~~~~V~E~g-~~~l~~~~~~~~p~i~viTni~~dHl~~~~-t~e~i~~~K~~i~~~~~~~~ 157 (407)
.++. +.+.++|++|+|+| ++++|.++. ++|+++|||||+.||+++|| |+|+|+++|++|++ +++
T Consensus 130 ~T~~e~~t~~a~~~f~~~~~d~~VlEvg~~g~~d~t~~-~~P~vaViTnI~~DHld~~G~t~e~ia~~K~~i~~---~~~ 205 (442)
T 1o5z_A 130 PSFFEVVTAMAFLYFAEKNVDIAVLEVGLGGRLDATNV-VFPLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIK---ERV 205 (442)
T ss_dssp CCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTCGGGG-CCCSCEEECCCCC-------CCHHHHHHHHGGGCC---TTC
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCcccccc-CCCCEEEECCccHhhhhhhCcCHHHHHHHHHhhcc---CCc
Confidence 0000 01346889999999 688888776 89999999999999999999 99999999999998 578
Q ss_pred eEEEeCCChhhHHHHhc----cccceEEeecCCCccccc---ccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHH
Q 015421 158 LGLLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKIDT---EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAA 230 (407)
Q Consensus 158 ~~v~n~dd~~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~ 230 (407)
.+|+|.||+....+... .+.++++|+.+ +.... ......+.+...+ . +..+.++++|.||++|+++|+
T Consensus 206 ~~V~~~dd~~~~~~~~~~a~~~~~~~~~~~~d--~~~~~~~~~~~~~~~~~~~~~-~--~~~~~l~l~G~hn~~NalaAi 280 (442)
T 1o5z_A 206 PLVTGERKREALKVMEDVARKKSSRMYVIDKD--FSVKVKSLKLHENRFDYCGEN-T--FEDLVLTMNGPHQIENAGVAL 280 (442)
T ss_dssp CEEECCCCHHHHHHHHHHHHHHTCCEEEBTTT--BEEEEEECCTTCEEEEEESSS-E--EEEEEESSCSTHHHHHHHHHH
T ss_pred cEEEcCCChHHHHHHHHHHHHcCCcEEEeCcc--eeeeccccccCCceEEEeccc-c--ccccccCCCcHhHHHHHHHHH
Confidence 99999999887665432 24567777642 21110 0011223332211 1 113568999999999999999
Q ss_pred HHHHHH--HcCCCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC----CCcEEEEECCCCC
Q 015421 231 LSVLGL--DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAK 304 (407)
Q Consensus 231 ~~a~~~--~lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~g~~~~ 304 (407)
+++. .+|++.+.|.++|++|. +|||||++. .++..+|.| ++|||+|++++++.+. ++|+++|+|++.+
T Consensus 281 --a~~~~~~lgi~~~~i~~~L~~~~-~~gR~e~~~--~~~~~viiD-~AhNp~s~~~~l~~l~~~~~~~~~i~V~g~~~d 354 (442)
T 1o5z_A 281 --KTLEATGLPLSEKAIREGLKNAK-NLGRFEILE--KNGKMYILD-GAHNPHGAESLVRSLKLYFNGEPLSLVIGILDD 354 (442)
T ss_dssp --HHHHHHCCCCCHHHHHHHHHHCC-CTTSSEEEE--ETTEEEEEC-CCCSHHHHHHHHHHHHHHCTTCCEEEEECCCTT
T ss_pred --HHHHHhhcCCCHHHHHHHHHhCC-CCCceEEEE--cCCCeEEEE-CCcCHHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 8888 89999999999999999 999999995 342445556 5999999999998873 3688999998765
Q ss_pred CCCCCCCcchHhhhhhccC-ccEEEEeCCC------hHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcC
Q 015421 305 VLNGQESNGFEKLIEPLNH-HRCVITFGYS------GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 377 (407)
Q Consensus 305 ~~~~~~~~~~~~~~~~l~~-~~~v~~~g~~------~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~ 377 (407)
+ .+.++++.+.+ .|.++++|.+ +..+.+.++..+ ..+..++++++|++.+ ||+||++
T Consensus 355 k-------d~~~~~~~l~~~~d~vi~~~~~~~r~~~~~~i~~~~~~~~--~~~~~~~~~~~Ai~~a------~d~VLv~- 418 (442)
T 1o5z_A 355 K-------NREDILRKYTGIFERVIVTRVPSPRMKDMNSLVDMAKKFF--KNVEVIEDPLEAIEST------ERATVVT- 418 (442)
T ss_dssp S-------CHHHHHGGGTTTCSEEEECCCSSTTCCCHHHHHHHHHHHC--SCCEECSSHHHHHHTC------CSEEEEE-
T ss_pred C-------CHHHHHHHHHhhCCEEEEECCCCCCCCCHHHHHHHHHhcC--CCceecCCHHHHHHhC------CCEEEEE-
Confidence 4 25566666554 6888777632 356666665432 1345678999998876 8999984
Q ss_pred CCCCcccccChh
Q 015421 378 GCASFDEFRNFE 389 (407)
Q Consensus 378 G~~s~~~~~~~~ 389 (407)
|||+.+.++.
T Consensus 419 --GS~~~~~~~~ 428 (442)
T 1o5z_A 419 --GSLFLVGYVR 428 (442)
T ss_dssp --SCHHHHHHHH
T ss_pred --eeHHHHHHHH
Confidence 6787776653
No 16
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=100.00 E-value=7.1e-46 Score=367.42 Aligned_cols=310 Identities=18% Similarity=0.145 Sum_probs=221.2
Q ss_pred CCCcEEEEecCCChHhHHHHHHHHHHhcCCcee--ecccC----------Cccchhhhhh-----------cc--cCC--
Q 015421 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF--VGGNL----------GNPLSEAAFH-----------CI--ALP-- 93 (407)
Q Consensus 41 ~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~--~~g~~----------g~~~~~~~~~-----------~~--~~~-- 93 (407)
++.++|+||||||||||++||+++|++.|++++ +++++ |.+++...+. .. +..
T Consensus 47 ~~~~vI~VTGTnGKtTT~~~l~~iL~~~G~~~g~~~s~~l~~~neri~i~g~~i~~~~~~~~~~~v~~~~~~~~~t~~e~ 126 (422)
T 1w78_A 47 PAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQGQELPESAHTASFAEIESARGDISLTYFEY 126 (422)
T ss_dssp CSSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHTTTCCCCHHHH
T ss_pred cCCcEEEEeCCcChHHHHHHHHHHHHHCCCCEEEECCCCcCcCceEEEECCEECCHHHHHHHHHHHHHHhccCCCChHHH
Confidence 578999999999999999999999999999874 33322 2222211100 00 000
Q ss_pred --------CCCCCCcEEEEEec-ccccccCCccccceEEEEecCChhhhccCC-CHHHHHHHHHHhhcccCCCceEEEeC
Q 015421 94 --------SSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPF 163 (407)
Q Consensus 94 --------~~~~~~~~~V~E~g-~~~l~~~~~~~~p~i~viTni~~dHl~~~~-t~e~i~~~K~~i~~~~~~~~~~v~n~ 163 (407)
+.+.++|++|+|+| ++++|.++. ++|+++|||||+.||+++|| |+|+|+++|+++++ +++.+|+|.
T Consensus 127 ~t~~a~~~~~~~~~d~~VlEvgl~~~~d~t~~-~~p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~---~~~~~v~~~ 202 (422)
T 1w78_A 127 GTLSALWLFKQAQLDVVILEVGLGGRLDATNI-VDADVAVVTSIALDHTDWLGPDRESIGREKAGIFR---SEKPAIVGE 202 (422)
T ss_dssp HHHHHHHHHHHHTCSEEEEECSSSSTTSGGGG-SCCSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCC---TTSEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCcccccccC-CCCCEEEECCcChhhhhhhCCCHHHHHHHHHhhcc---CCCcEEEcC
Confidence 01346789999999 678887765 79999999999999999999 99999999999997 467899988
Q ss_pred CChh--hHHHHhccccceEEeecCCCcccccccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHHHHHHHHHc--C
Q 015421 164 GNQH--LNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI--G 239 (407)
Q Consensus 164 dd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~~~a~~~~l--g 239 (407)
||+. +...+...+.++++|+.+ +.+... ...+.+...+... ..++++ .||++|+++|+ +++..+ |
T Consensus 203 d~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~--~~~~~~~~~~~~~----~~l~l~-~hn~~Na~aAi--a~~~~~~~g 271 (422)
T 1w78_A 203 PEMPSTIADVAQEKGALLQRRGVE--WNYSVT--DHDWAFSDAHGTL----ENLPLP-LVPQPNAATAL--AALRASGLE 271 (422)
T ss_dssp SSCCHHHHHHHHHHTCEEEEBTTT--BEEEEC--SSCEEEEETTEEE----EEECCC-SSCHHHHHHHH--HHHHHHTCC
T ss_pred ccHHHHHHHHHHHcCCceEEeCcc--eeeecc--CceEEEecCCccc----ccCCch-HHHHHHHHHHH--HHHHHhCCC
Confidence 7764 222332334567777642 221111 1122222222111 357788 99999999999 666664 8
Q ss_pred CCHHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhccC----CCcEEEEECCCCCCCCCCCCcchH
Q 015421 240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQESNGFE 315 (407)
Q Consensus 240 i~~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~g~~~~~~~~~~~~~~~ 315 (407)
++.+.|.++|++|+ ++||||++. .++ .+|+| ++|||+|++++++.+. ++|+++|+|++.++ .++
T Consensus 272 i~~~~i~~~L~~~~-~~gR~e~~~--~~~-~~i~D-~Ahnp~s~~~~l~~l~~~~~~~~~i~V~g~~~~k-------d~~ 339 (422)
T 1w78_A 272 VSENAIRDGIASAI-LPGRFQIVS--ESP-RVIFD-VAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDK-------DIA 339 (422)
T ss_dssp CCHHHHHHHHHHCC-CTTSSEEEE--TTT-EEEEE-CCCSHHHHHHHHHHHHHSCSCSCEEEEECCBTTS-------CHH
T ss_pred CCHHHHHHHHHhCC-CCceEEEEe--CCC-eEEEE-CCCCHHHHHHHHHHHHHhCCCCCEEEEEeccCCC-------CHH
Confidence 99999999999999 899999995 345 45556 4999999999977663 46899999987654 256
Q ss_pred hhhhhccC-ccEEEEeCCC------hHHHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCccccc
Q 015421 316 KLIEPLNH-HRCVITFGYS------GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFR 386 (407)
Q Consensus 316 ~~~~~l~~-~~~v~~~g~~------~~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~ 386 (407)
+++..+.+ .|.++++|.+ +..+.+.+.. +..++++++|++.+.+.+++||+||++ ||++.+.
T Consensus 340 ~~~~~l~~~~d~vi~~~~~~~r~~~~~~l~~~~~~------~~~~~~~~~ai~~a~~~~~~~d~vLv~---GS~~~~~ 408 (422)
T 1w78_A 340 GTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGN------GKSFDSVAQAWDAAMADAKAEDTVLVC---GSFHTVA 408 (422)
T ss_dssp HHHHHHHTTCSEEEECCCCSSSBCCHHHHHHHHSS------CEECSSHHHHHHHHHHHCCTTCEEEEE---SSHHHHH
T ss_pred HHHHHHHhhCCEEEEECCCCCCCCCHHHHHHHHhh------cccCCCHHHHHHHHHHhcCCCCEEEEE---eeHHHHH
Confidence 67766643 6888888743 3445554421 345689999999999999999999996 4555443
No 17
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=100.00 E-value=2.3e-44 Score=344.38 Aligned_cols=246 Identities=17% Similarity=0.195 Sum_probs=191.5
Q ss_pred eeeeeccccCcCcHHHHHHHhcCCceeeHHHHHHhhCCCCCcEEEEecCCChHhHHHHHHHHHHhcCCcee-e----ccc
Q 015421 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF-V----GGN 77 (407)
Q Consensus 3 ~~~~~~~~~~~~~p~l~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTt~~~l~~iL~~~g~~~~-~----~g~ 77 (407)
-+||+||+++++||++++|+++|+|++++++++++.+.++.++|+||||||||||++|++++|+..|.++. . .+|
T Consensus 68 d~vV~Spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~~g~~~~n 147 (326)
T 3eag_A 68 DVYVIGNVAKRGMDVVEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPEN 147 (326)
T ss_dssp SEEEECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEECSSEETT
T ss_pred CEEEECCCcCCCCHHHHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEecceecc
Confidence 47999999999999999999999999999999987532567899999999999999999999999998752 2 266
Q ss_pred CCccchhhhhhcccCCCCCCCCcEEEEEecccccccC-----CccccceEEEEecCChhhhccCCCHHHHHHHHHHhhcc
Q 015421 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIP-----NKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH 152 (407)
Q Consensus 78 ~g~~~~~~~~~~~~~~~~~~~~~~~V~E~g~~~l~~~-----~~~~~p~i~viTni~~dHl~~~~t~e~i~~~K~~i~~~ 152 (407)
+|.+....... +.....+.+++|+|+|+++.... ...++|+++|||||++||+|+|+|+|+|+++|.+|++.
T Consensus 148 ~~~~~~~~~p~---~~~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~vaviTNI~~DHLd~~gs~e~y~~aK~~i~~~ 224 (326)
T 3eag_A 148 FGVSARLPQTP---RQDPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHYLVRT 224 (326)
T ss_dssp SSCSEECCCCC---SSCTTSCCCEEEEECCCSEEETTEEEEGGGGSCCSEEEECCCCCCCTTTSSSHHHHHHHHHHHHTT
T ss_pred CCcceecCCcc---ccccCCCCCEEEEEccccccchhhcccceeEecCCEEEECCCcHHHHhhcCCHHHHHHHHHHHHHh
Confidence 76653211000 00123467899999998654321 12379999999999999999999999999999999999
Q ss_pred cCCCceEEEeCCChhhHHHHhc-cccceEEeecCCCccccc-ccccceeEeccCCeeeeeeecccCCCChhHHHHHHHHH
Q 015421 153 MVNTKLGLLPFGNQHLNEAIKG-HRFNLAWIGAFPGVKIDT-EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAA 230 (407)
Q Consensus 153 ~~~~~~~v~n~dd~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~Nal~A~ 230 (407)
+++++.+|+|.|||.+..+... ...++++|+...++.... ...+. |.+...+.. +..+.++++|+||++|+++|+
T Consensus 225 ~~~~~~~V~n~Dd~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~g~-f~~~~~~~~--~~~~~l~l~G~hNv~NalaAi 301 (326)
T 3eag_A 225 VPSEGLIVCNGRQQSLQDTLDKGCWTPVEKFGTEHGWQAGEANADGS-FDVLLDGKT--AGRVKWDLMGRHNRMNALAVI 301 (326)
T ss_dssp SCTTSEEEEESSCHHHHHHHTTCCCSCEEEESSSSSEEEEEECTTSC-EEEEETTEE--EEEECCCCCSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCHHHHHHHhhccCCCEEEECCCCcEEEEEecCCcE-EEEEECCce--EEEEEecCCcHHHHHHHHHHH
Confidence 8889999999999999887653 345678887543332110 01112 433323321 224579999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHhhcCCCCC
Q 015421 231 LSVLGLDIGVDVEALNSTIEILRTPP 256 (407)
Q Consensus 231 ~~a~~~~lgi~~~~i~~~L~~~~~~~ 256 (407)
+++..+|++.+.|.++|++|+|++
T Consensus 302 --a~a~~lGi~~~~i~~~L~~f~gv~ 325 (326)
T 3eag_A 302 --AAARHVGVDIQTACEALGAFKNVK 325 (326)
T ss_dssp --HHHHHHTCCHHHHHHHHHTCCCEE
T ss_pred --HHHHHcCCCHHHHHHHHHhCCCCC
Confidence 899999999999999999999765
No 18
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=99.78 E-value=1.8e-18 Score=148.08 Aligned_cols=138 Identities=14% Similarity=0.210 Sum_probs=86.1
Q ss_pred HHHHHHHhhcCCCCCCceeEEeeecCCEEEEEcCCCCCHHHHHHHHhcc----CCCcEEEEECCCCCCCCCCCCcchHhh
Q 015421 242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL----KGHKCVILLGGQAKVLNGQESNGFEKL 317 (407)
Q Consensus 242 ~~~i~~~L~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~----~~~~~i~V~g~~~~~~~~~~~~~~~~~ 317 (407)
.++|+++|++|+|++||||++. ..++++|||| |||||++++++++.+ +++|+++|||...+.. ..+..+.++
T Consensus 11 ~~~i~~~L~~f~gv~~R~E~i~-~~~g~~vi~D-yaHnP~si~a~l~al~~~~~~~riivvf~~g~~s~--r~k~~~~~~ 86 (163)
T 3mvn_A 11 VDLGTENLYFQSNAQRRLEVKG-VVNNITVYDD-FAHHPTAITATIDALRAKVGQQRILAVLEPRSNTM--KMGVHKHEL 86 (163)
T ss_dssp ----------------CCEEEE-EETTEEEEEE-CCCSHHHHHHHHHHHHHHHTTSCEEEEECCC-----------CHHH
T ss_pred HHHHHHHHHhCCCCCCCeEEEe-cCCCcEEEEc-CCCCHHHHHHHHHHHHHhcCCCcEEEEECCCCcch--hhHHHHHHH
Confidence 3678899999999999999996 3678999999 699999999988776 3468889997653210 112245677
Q ss_pred hhhccCccEEEEeCCChH--HHHHHHHhCCCCccccccccHHHHHHHHHHhcCCCCEEEEcCCCCCccccc
Q 015421 318 IEPLNHHRCVITFGYSGV--LIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFR 386 (407)
Q Consensus 318 ~~~l~~~~~v~~~g~~~~--~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~~gd~vL~~~G~~s~~~~~ 386 (407)
+..+..+|.++++|.... .+.+.++..+ ..+.+++|+++|++.+.+.+++||+||++ |+++|+.+.
T Consensus 87 ~~~~~~aD~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~eai~~~~~~~~~gDvVLv~-Gsg~~~~~~ 154 (163)
T 3mvn_A 87 ATSLQDADSVFIYQPPTIEWQVSEVLANLA--QPAISADDVDELVMRIVQQAKPNDHILIM-SNGAFGGIH 154 (163)
T ss_dssp HHHHTTCSEEEEECC----CCHHHHHTTCC--SCEEEESSHHHHHHHHHHHCCTTCEEEEE-CSSCGGGHH
T ss_pred HHHHhcCCEEEEECCCCcccCHHHHHhhCC--CCeEEECCHHHHHHHHHHhCCCCCEEEEE-CCCCHHHHH
Confidence 777666899999985421 1333333322 25677899999999999999999999996 888887643
No 19
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=94.23 E-value=0.3 Score=45.92 Aligned_cols=107 Identities=20% Similarity=0.135 Sum_probs=61.7
Q ss_pred CCcEEEEecC---CChHhHHHHHHHHHHhcCCceeeccc----------CCccchhhhhhc-------ccCCCCCCCCcE
Q 015421 42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVGGN----------LGNPLSEAAFHC-------IALPSSKPKFQV 101 (407)
Q Consensus 42 ~~~~I~VTGT---nGKTTt~~~l~~iL~~~g~~~~~~g~----------~g~~~~~~~~~~-------~~~~~~~~~~~~ 101 (407)
+.+.|.|+|| .|||+|+..|...|++.|+++...+. .|.++....... ........+.|+
T Consensus 168 ~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqtg~li~~~~gv~~D~~~~~~~ag~~e~~i~~~~~~~~D~ 247 (350)
T 2g0t_A 168 KIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTGILIGADAGYVIDAVPADFVSGVVEKAVLKLEKTGKEI 247 (350)
T ss_dssp CSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHHHHHTTCSEECCGGGSBGGGHHHHHHHHHHHHHHTTCSE
T ss_pred cceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCceeeeeccCCCCCCCceecchhhHHHHhhHHHhhhcCCCE
Confidence 4678999998 59999999999999999999743111 222222111110 000000346688
Q ss_pred EEEEecccccccC------Cc--cccceEEEEec-CChhhhccC------CCHHHHHHHHHH
Q 015421 102 AVVEVSSYQMEIP------NK--YFCPTVSVVLN-LTPDHLERH------KTMKNYALTKCH 148 (407)
Q Consensus 102 ~V~E~g~~~l~~~------~~--~~~p~i~viTn-i~~dHl~~~------~t~e~i~~~K~~ 148 (407)
.|+|-.++=..-. .. -.+|+..|+.. -++.|++.| +++++....-..
T Consensus 248 ivVEGqGgl~~P~~~~v~~~ll~g~~p~~vIl~h~~~r~~~~~~~~~~~~~~i~~~i~~ie~ 309 (350)
T 2g0t_A 248 VFVEGQGALRHPAYGQVTLGLLYGSNPDVVFLVHDPSRDHFESFPEIPKKPDFEEERRLIET 309 (350)
T ss_dssp EEEECCSCTTCTTTHHHHHHHHHHHCCSEEEEECCTTCSSCTTCTTSSCCCCHHHHHHHHHH
T ss_pred EEEccCeeccccCchHHHHHHHcCCCCCEEEEEeCCCCccccCCCcccCCcCHHHHHHHHHH
Confidence 9999764311111 01 14788888865 555555544 566665544433
No 20
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=93.95 E-value=0.019 Score=56.47 Aligned_cols=64 Identities=19% Similarity=0.190 Sum_probs=50.1
Q ss_pred eeeeccccC-cCcHHHHHHHhcCCce--eeHHHHHHhhCC----CCCcEEEEecCCChHhH-HHHHHHHHHhc
Q 015421 4 LWLFLLEFQ-LKATGLACLLQSGKRV--MSELDFAAQVIP----RSIKILAVTGTNGKSTV-VTFVGQMLNHL 68 (407)
Q Consensus 4 ~~~~~~~~~-~~~p~l~~a~~~~~~~--l~~~~~~~~~~~----~~~~~I~VTGTnGKTTt-~~~l~~iL~~~ 68 (407)
+||.++..+ .+++....|.+.++++ ..++++....++ +..-+|+|| |||||++ +.+|..-|++.
T Consensus 75 lVi~at~~~~~n~~i~~~a~~~~i~vn~~d~~e~~~~~~pa~~~~~~l~iaIs-T~Gksp~la~~ir~~ie~~ 146 (457)
T 1pjq_A 75 LAIAATDDDTVNQRVSDAAESRRIFCNVVDAPKAASFIMPSIIDRSPLMVAVS-SGGTSPVLARLLREKLESL 146 (457)
T ss_dssp EEEECCSCHHHHHHHHHHHHHTTCEEEETTCTTSSSEECCEEEEETTEEEEEE-CTTSCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCHHHHHHHHHHHHHcCCEEEECCCcccCceEeeeEEEeCCeEEEEE-CCCCChHHHHHHHHHHHHh
Confidence 677777777 4777889999999998 788887665532 233399999 9999998 88888888865
No 21
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.45 E-value=0.12 Score=47.94 Aligned_cols=34 Identities=29% Similarity=0.371 Sum_probs=29.6
Q ss_pred CCCcEEEEe--cCCChHhHHHHHHHHHHhcCCceee
Q 015421 41 RSIKILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (407)
Q Consensus 41 ~~~~~I~VT--GTnGKTTt~~~l~~iL~~~g~~~~~ 74 (407)
.+.++|+|+ |-.|||||+.-|+..|.+.|++|..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVll 81 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQ 81 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEE
Confidence 367899999 6789999999999999999999853
No 22
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=91.72 E-value=0.18 Score=45.14 Aligned_cols=39 Identities=28% Similarity=0.416 Sum_probs=31.0
Q ss_pred HHhhCCCCCcEEEEecCC---ChHhHHHHHHHHHHhcCCcee
Q 015421 35 AAQVIPRSIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 35 ~~~~~~~~~~~I~VTGTn---GKTTt~~~l~~iL~~~g~~~~ 73 (407)
+.++..++++.|.||||. |||+++..|...|++.|+++.
T Consensus 18 ~~~~~~~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~ 59 (251)
T 3fgn_A 18 ENLYFQSHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVA 59 (251)
T ss_dssp ----CCSSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHhcccCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEE
Confidence 344444578999999996 999999999999999999873
No 23
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=90.59 E-value=0.26 Score=42.09 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=26.9
Q ss_pred CcEEEEe---cCCChHhHHHHHHHHHHhcCCcee
Q 015421 43 IKILAVT---GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 43 ~~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
+++|+|+ |-.||||++..|+..|...|.++.
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vl 34 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIA 34 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEE
Confidence 4688888 667899999999999999998874
No 24
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=90.56 E-value=0.28 Score=43.24 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=29.4
Q ss_pred CCCcEEEEecC---CChHhHHHHHHHHHHhcCCcee
Q 015421 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 41 ~~~~~I~VTGT---nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
.+++.|.|||| .|||+++..|...|++.|+++.
T Consensus 2 ~~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~ 37 (228)
T 3of5_A 2 NAMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSL 37 (228)
T ss_dssp TTCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeE
Confidence 35788999999 5999999999999999999873
No 25
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.44 E-value=0.31 Score=40.80 Aligned_cols=34 Identities=18% Similarity=0.172 Sum_probs=28.2
Q ss_pred CCCcEEEEecCC--ChHhHHHHHHHHHHhcCCceee
Q 015421 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (407)
Q Consensus 41 ~~~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~~~ 74 (407)
+.+++|+|+|.. ||||+...|...|+..|+++..
T Consensus 2 ~~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ 37 (169)
T 1xjc_A 2 NAMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGT 37 (169)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeE
Confidence 357899999975 9999999999999999988743
No 26
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=89.69 E-value=0.3 Score=42.37 Aligned_cols=31 Identities=29% Similarity=0.187 Sum_probs=26.8
Q ss_pred cEEEEecC---CChHhHHHHHHHHHHhcCCceee
Q 015421 44 KILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (407)
Q Consensus 44 ~~I~VTGT---nGKTTt~~~l~~iL~~~g~~~~~ 74 (407)
++|.||++ .||||++.-|+..|.+.|+++..
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll 35 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAG 35 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 57888865 79999999999999999998843
No 27
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=88.99 E-value=0.4 Score=44.99 Aligned_cols=143 Identities=13% Similarity=0.058 Sum_probs=79.2
Q ss_pred eeeccccC-cCcHHHHHHHhcCCceee--HHH-HHHhhCC-----CCCcEEEEecC---CChHhHHHHHHHHHHhcCCce
Q 015421 5 WLFLLEFQ-LKATGLACLLQSGKRVMS--ELD-FAAQVIP-----RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 5 ~~~~~~~~-~~~p~l~~a~~~~~~~l~--~~~-~~~~~~~-----~~~~~I~VTGT---nGKTTt~~~l~~iL~~~g~~~ 72 (407)
||...+.+ .++|++.++.+.|..++. .+. .+ .... -+.+.|.|+|| .|||+|+..|...|++.|+++
T Consensus 106 Vvsglh~~l~~~pel~~~A~~g~~i~dvr~pp~~l-~~~~g~~~~v~~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a 184 (349)
T 2obn_A 106 LVNGLHTPLANIPDLNALLQPGQLIWDVRKEPANL-DVASGAARTLPCRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRS 184 (349)
T ss_dssp EEECSSSCCTTCHHHHHHCCTTCCEEETTCCCSSC-CCCCSGGGGCSSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCE
T ss_pred EEeCccchhhCCHHHHHHHHcCCEEEEeccCcccc-cccccceeeecceEEEEcCCCccccceeHHHHHHHHHHhcCCcE
Confidence 55555544 677888775444655542 111 11 1110 14678999998 599999999999999999997
Q ss_pred eeccc---------CCccchhhhhhc-------ccCCCCCCCCcEEEEEeccc---ccccC--Cc--cccce-EEEEecC
Q 015421 73 FVGGN---------LGNPLSEAAFHC-------IALPSSKPKFQVAVVEVSSY---QMEIP--NK--YFCPT-VSVVLNL 128 (407)
Q Consensus 73 ~~~g~---------~g~~~~~~~~~~-------~~~~~~~~~~~~~V~E~g~~---~l~~~--~~--~~~p~-i~viTni 128 (407)
...++ .|.|+.....++ ... ....++|+.++|--++ .+... .. -.+|+ +.++...
T Consensus 185 ~~~~tgqtg~~~~~~gi~~Dav~~df~aG~ve~~~~-~~~~~~d~vlVEGqGgl~~P~~~~t~~ll~g~~p~~vILv~~~ 263 (349)
T 2obn_A 185 KFLATGQTGVMLEGDGVALDAVRVDFAAGAVEQMVM-RYGKNYDILHIEGQGSLLHPGSTATLPLIRGSQPTQLVLVHRA 263 (349)
T ss_dssp EEECCSHHHHHHHSCSCCGGGSBHHHHHHHHHHHHH-HHTTTCSEEEECCCCCTTSTTCCTHHHHHHHHCCSEEEEEEET
T ss_pred EEEeccchhhhhhcCCcchhHHHHHHHhhhHHHHHH-HhccCCCEEEEeCCCcccCcChHhHHHHHHHcCCCeEEEEECC
Confidence 43111 233332111110 000 1134678899997542 22100 01 13666 6677777
Q ss_pred ChhhhccC-----CCHHHHHHHHHHh
Q 015421 129 TPDHLERH-----KTMKNYALTKCHL 149 (407)
Q Consensus 129 ~~dHl~~~-----~t~e~i~~~K~~i 149 (407)
+.-|++.| +++++....-..+
T Consensus 264 ~~g~i~~~~~~~~p~l~~~i~t~e~l 289 (349)
T 2obn_A 264 GQTHNGNNPHVPIPPLPEVIRLYETV 289 (349)
T ss_dssp TCCBCSSCTTSBCCCHHHHHHHHHHH
T ss_pred CCceECCCCccCCCCHHHHHHHHHHH
Confidence 77666333 4666665554444
No 28
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=87.96 E-value=0.42 Score=42.04 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=27.0
Q ss_pred CCCcEEEEe---cCCChHhHHHHHHHHHHhc-CCce
Q 015421 41 RSIKILAVT---GTNGKSTVVTFVGQMLNHL-GIEA 72 (407)
Q Consensus 41 ~~~~~I~VT---GTnGKTTt~~~l~~iL~~~-g~~~ 72 (407)
+..++|+|+ |-.||||++..|+..|... |.++
T Consensus 2 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~V 37 (245)
T 3ea0_A 2 NAKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHV 37 (245)
T ss_dssp -CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCE
T ss_pred CCCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCE
Confidence 356889998 5678999999999999998 8776
No 29
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=87.69 E-value=0.78 Score=41.45 Aligned_cols=33 Identities=18% Similarity=0.374 Sum_probs=28.6
Q ss_pred CCCcEEEEecC---CChHhHHHHHHHHHHhcCCcee
Q 015421 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 41 ~~~~~I~VTGT---nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
++.++|.||++ .||||++.-|+..|.+.|.++.
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVL 115 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTL 115 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEE
Confidence 46789999965 6999999999999999998773
No 30
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=87.26 E-value=0.92 Score=41.61 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=28.5
Q ss_pred CCCcEEEEecC---CChHhHHHHHHHHHHhcCCcee
Q 015421 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 41 ~~~~~I~VTGT---nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
...++|.||++ .||||++.-|+..|.+.|.++.
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVL 137 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVL 137 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEE
Confidence 45689999976 6999999999999999998773
No 31
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=87.24 E-value=0.88 Score=41.49 Aligned_cols=32 Identities=16% Similarity=0.245 Sum_probs=27.9
Q ss_pred CCCcEEEEecC---CChHhHHHHHHHHHHhcCCce
Q 015421 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 41 ~~~~~I~VTGT---nGKTTt~~~l~~iL~~~g~~~ 72 (407)
.+.++|.||++ .||||++.-|+..|.+.|.++
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rV 124 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRV 124 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCE
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCE
Confidence 45689999865 689999999999999999877
No 32
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=87.21 E-value=1 Score=40.27 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=32.1
Q ss_pred HHHHHHhhCCCCCcEEEEecC---CChHhHHHHHHHHHHhcCCcee
Q 015421 31 ELDFAAQVIPRSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 31 ~~~~~~~~~~~~~~~I~VTGT---nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
..+...++. +..++|+|+++ .||||++..|+..|.+.|+++.
T Consensus 7 ~~~~a~~l~-~~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~Vl 51 (262)
T 2ph1_A 7 DEEIKERLG-KIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVG 51 (262)
T ss_dssp HHHHHHHHT-TCSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEE
T ss_pred hhhhhhhhc-cCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 344444544 45679999854 5799999999999999998874
No 33
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=86.88 E-value=0.69 Score=41.09 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=29.4
Q ss_pred CCCcEEEEecC---CChHhHHHHHHHHHHhcCCcee
Q 015421 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 41 ~~~~~I~VTGT---nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
+..+.|.|||| .|||+++..|...|++.|+++.
T Consensus 19 ~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~ 54 (242)
T 3qxc_A 19 FQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTI 54 (242)
T ss_dssp CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred hcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceE
Confidence 35689999999 6999999999999999999873
No 34
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=85.66 E-value=0.69 Score=41.21 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=27.4
Q ss_pred CCCcEEEEecC---CChHhHHHHHHHHHHhcCCcee
Q 015421 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 41 ~~~~~I~VTGT---nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
++.++|+|+++ .||||++..|+..|...|.++.
T Consensus 4 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vl 39 (257)
T 1wcv_1 4 AKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVL 39 (257)
T ss_dssp -CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEE
Confidence 35689999854 5799999999999999998773
No 35
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=85.33 E-value=0.87 Score=41.70 Aligned_cols=32 Identities=31% Similarity=0.389 Sum_probs=27.1
Q ss_pred CCCcEEEEe--cCCChHhHHHHHHHHHHhcCCce
Q 015421 41 RSIKILAVT--GTNGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 41 ~~~~~I~VT--GTnGKTTt~~~l~~iL~~~g~~~ 72 (407)
+..++|+|+ |-.||||++.-|+..|.+.|+++
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~V 72 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRV 72 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeE
Confidence 356788887 55789999999999999999877
No 36
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=85.31 E-value=0.89 Score=39.63 Aligned_cols=30 Identities=23% Similarity=0.427 Sum_probs=25.6
Q ss_pred cEEEEec---CCChHhHHHHHHHHHHhcCCcee
Q 015421 44 KILAVTG---TNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 44 ~~I~VTG---TnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
++|+|++ -.||||++..|+..|.+.|+++.
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~Vl 35 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVL 35 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 6788874 56899999999999999998773
No 37
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=84.70 E-value=0.96 Score=40.04 Aligned_cols=29 Identities=31% Similarity=0.439 Sum_probs=25.2
Q ss_pred cEEEEe---cCCChHhHHHHHHHHHHhcCCce
Q 015421 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 44 ~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~ 72 (407)
++|+|+ |-.||||++..|+..|...|+++
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~V 34 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKT 34 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcE
Confidence 678886 55689999999999999999877
No 38
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=84.56 E-value=0.83 Score=40.82 Aligned_cols=30 Identities=27% Similarity=0.336 Sum_probs=24.6
Q ss_pred cEEEEe--cCCChHhHHHHHHHHHHhcCCcee
Q 015421 44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 44 ~~I~VT--GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
++|+|. |-.||||++..|+..|...|+++.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vl 33 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIM 33 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEE
Confidence 455554 678999999999999999998773
No 39
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=84.45 E-value=1.1 Score=41.64 Aligned_cols=32 Identities=25% Similarity=0.508 Sum_probs=27.2
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHHhcCCcee
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~~ 73 (407)
+..+|+|+|.+ |||||+..|+..|...|.++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVl 137 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVL 137 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 45699999775 799999999999998887764
No 40
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=84.44 E-value=1 Score=40.81 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=26.0
Q ss_pred CcEEEEe--cCCChHhHHHHHHHHHHhcCCcee
Q 015421 43 IKILAVT--GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 43 ~~~I~VT--GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
+++|+|+ |-.||||++.-|+..|.+.|+++.
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVl 34 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVM 34 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEE
Confidence 4566665 678999999999999999998874
No 41
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=84.25 E-value=0.89 Score=40.62 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=26.0
Q ss_pred CCCcEEEEecC---CChHhHHHHHHHHHHhcCCce
Q 015421 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 41 ~~~~~I~VTGT---nGKTTt~~~l~~iL~~~g~~~ 72 (407)
++.++|+|++. .||||++..|+..|. .|.++
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~V 58 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKV 58 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCE
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCE
Confidence 46789999754 579999999999999 88776
No 42
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=84.03 E-value=0.9 Score=41.24 Aligned_cols=31 Identities=26% Similarity=0.326 Sum_probs=26.9
Q ss_pred CcEEEEe---cCCChHhHHHHHHHHHHhcCCcee
Q 015421 43 IKILAVT---GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 43 ~~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
.++|+|+ |-.||||++..|+..|...|+++.
T Consensus 4 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vl 37 (286)
T 2xj4_A 4 TRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVA 37 (286)
T ss_dssp CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 3589998 567899999999999999998874
No 43
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=83.56 E-value=1.2 Score=40.97 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=26.8
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHHhcCCcee
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~~ 73 (407)
...+|+|+|.+ |||||+..|+..+...|.++.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~ 136 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVV 136 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEE
Confidence 45689999876 799999999999998876663
No 44
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=82.92 E-value=2 Score=36.49 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=26.7
Q ss_pred CCCcEEEEecCC--ChHhHHHHHHHHHHhcCCce
Q 015421 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 41 ~~~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~ 72 (407)
.+..+|+|+|.+ ||||++.+|...|...|..+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v 53 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISV 53 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeE
Confidence 356799999986 89999999999998766554
No 45
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=81.74 E-value=1.4 Score=37.95 Aligned_cols=28 Identities=32% Similarity=0.516 Sum_probs=24.1
Q ss_pred EEEEe---cCCChHhHHHHHHHHHHhcCCcee
Q 015421 45 ILAVT---GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 45 ~I~VT---GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
+|+|+ |-.||||++..|+..|...| ++.
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~Vl 32 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETL 32 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEE
Confidence 56666 67799999999999999999 874
No 46
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=81.46 E-value=1.5 Score=38.86 Aligned_cols=30 Identities=30% Similarity=0.556 Sum_probs=25.4
Q ss_pred cEEEEe---cCCChHhHHHHHHHHHHhcCCcee
Q 015421 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 44 ~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
++|+|+ |-.||||++..|+..|...|.++.
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~Vl 35 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVT 35 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEE
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEE
Confidence 577776 456899999999999999998874
No 47
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=81.00 E-value=1.5 Score=41.58 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=28.0
Q ss_pred CCCcEEEEe---cCCChHhHHHHHHHHHHhcCCcee
Q 015421 41 RSIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 41 ~~~~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
++.++|+|+ |-.||||++.-|+..|...|.++.
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVl 176 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVF 176 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEE
Confidence 357899998 456899999999999999998773
No 48
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=80.68 E-value=0.72 Score=41.99 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.2
Q ss_pred ecCCChHhHHHHHHHHHHhcCCce
Q 015421 49 TGTNGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 49 TGTnGKTTt~~~l~~iL~~~g~~~ 72 (407)
-|-.||||++..|+..|...|+++
T Consensus 45 KGGvGKTT~a~nLA~~la~~G~rV 68 (298)
T 2oze_A 45 KGGVGKSKLSTMFAYLTDKLNLKV 68 (298)
T ss_dssp SSSSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCCchHHHHHHHHHHHHHhCCCeE
Confidence 357899999999999999988776
No 49
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=79.65 E-value=1.9 Score=40.47 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=29.0
Q ss_pred CCCcEEEEe---cCCChHhHHHHHHHHHHhcCCceee
Q 015421 41 RSIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (407)
Q Consensus 41 ~~~~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~~~ 74 (407)
+..++|.|+ |-.||||++.-++..|.+.|.++..
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLl 59 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVI 59 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEE
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEE
Confidence 456778887 6778999999999999999998853
No 50
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=79.42 E-value=0.89 Score=42.94 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=26.6
Q ss_pred CcEEEEe---cCCChHhHHHHHHHHHHhcCCcee
Q 015421 43 IKILAVT---GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 43 ~~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
+++|+|+ |-.||||++.-|+..|...|.+|.
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVL 34 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFALQGKRVL 34 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEE
Confidence 4678887 557899999999999999999884
No 51
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=77.82 E-value=2.5 Score=38.63 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=25.6
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHHh-cCCcee
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLNH-LGIEAF 73 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~~-~g~~~~ 73 (407)
+..+|+++|.| |||||+..|+..+.. .|.++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~ 138 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIA 138 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEE
Confidence 35577777665 899999999999985 787764
No 52
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=77.63 E-value=2.9 Score=34.92 Aligned_cols=32 Identities=28% Similarity=0.265 Sum_probs=27.2
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
.+++|+|+|. .||||+...|...|...|+++.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~ 38 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPG 38 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccccCCcee
Confidence 4689999998 4899999999998988888774
No 53
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=77.20 E-value=1.7 Score=39.58 Aligned_cols=29 Identities=34% Similarity=0.528 Sum_probs=23.3
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHHhcCC
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGI 70 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~~~g~ 70 (407)
+..+|+|||.. ||||++.+|+..|...|.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~ 34 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGV 34 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 45689999985 899999999998876554
No 54
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=76.64 E-value=2.4 Score=35.54 Aligned_cols=29 Identities=28% Similarity=0.510 Sum_probs=24.3
Q ss_pred EEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 45 ~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
.|+|+|. .||||.+.+|+..|...|+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 5888885 6899999999999998888764
No 55
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=76.45 E-value=2.3 Score=39.40 Aligned_cols=31 Identities=19% Similarity=0.315 Sum_probs=26.9
Q ss_pred cEEEEe---cCCChHhHHHHHHHHHHhcCCceee
Q 015421 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (407)
Q Consensus 44 ~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~~~ 74 (407)
++|.|+ |-.||||++.-++..|.+.|.++..
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLl 47 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLV 47 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEE
Confidence 677777 7788999999999999999998843
No 56
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=76.29 E-value=2.6 Score=40.77 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=27.5
Q ss_pred CcEEEEecCC--ChHhHHHHHHHHHHhcCCceee
Q 015421 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (407)
Q Consensus 43 ~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~~~ 74 (407)
..+|.++|.+ |||||+..|+..|+..|.++..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll 130 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL 130 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 5689999865 5999999999999999988743
No 57
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=76.26 E-value=3.6 Score=35.04 Aligned_cols=30 Identities=27% Similarity=0.451 Sum_probs=25.5
Q ss_pred CCCcEEEEecCC--ChHhHHHHHHHHHHhcCC
Q 015421 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGI 70 (407)
Q Consensus 41 ~~~~~I~VTGTn--GKTTt~~~l~~iL~~~g~ 70 (407)
.+..+|+|.|-| ||||+..+|..++...|.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~ 51 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGL 51 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 456799999987 899999999999986553
No 58
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=74.97 E-value=0.78 Score=41.55 Aligned_cols=64 Identities=13% Similarity=0.046 Sum_probs=41.9
Q ss_pred eeeeeccccC-cCcHHHHHHHhc---CCce--eeHHHHHHhhCC----CCC-cEEEEecCCChHhHH-HHHHHHHHh
Q 015421 3 MLWLFLLEFQ-LKATGLACLLQS---GKRV--MSELDFAAQVIP----RSI-KILAVTGTNGKSTVV-TFVGQMLNH 67 (407)
Q Consensus 3 ~~~~~~~~~~-~~~p~l~~a~~~---~~~~--l~~~~~~~~~~~----~~~-~~I~VTGTnGKTTt~-~~l~~iL~~ 67 (407)
-+|+..+..+ .+.+..+.|++. ++++ ...++...-.++ +.. -+|+|| |||||++. ..|..-+++
T Consensus 108 dlViaat~d~~~n~~I~~~Ar~~f~~~i~VNvvd~pel~~f~~Pa~~~~g~~l~IaIS-T~Gksp~lA~~ir~~ie~ 183 (274)
T 1kyq_A 108 YIIMTCIPDHPESARIYHLCKERFGKQQLVNVADKPDLCDFYFGANLEIGDRLQILIS-TNGLSPRFGALVRDEIRN 183 (274)
T ss_dssp EEEEECCSCHHHHHHHHHHHHHHHCTTSEEEETTCGGGBSEECCEEEEETTTEEEEEE-ESSSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCChHHHHHHHHHHHHhcCCCcEEEECCCcccCeeEeeeEEEeCCCEEEEEE-CCCCCcHHHHHHHHHHHH
Confidence 4566666655 555666888888 8888 777776553321 233 399999 99998764 445544443
No 59
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=74.77 E-value=3.2 Score=39.47 Aligned_cols=26 Identities=8% Similarity=0.197 Sum_probs=23.1
Q ss_pred CCcEEEEe---cCCChHhHHHHHHHHHHh
Q 015421 42 SIKILAVT---GTNGKSTVVTFVGQMLNH 67 (407)
Q Consensus 42 ~~~~I~VT---GTnGKTTt~~~l~~iL~~ 67 (407)
..++|+|+ |-.||||++..|+..|..
T Consensus 107 ~~~vIav~s~KGGvGKTT~a~nLA~~La~ 135 (398)
T 3ez2_A 107 EAYVIFISNLKGGVSKTVSTVSLAHAMRA 135 (398)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 57899998 667999999999999985
No 60
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=74.74 E-value=3.4 Score=37.83 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=25.8
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHHhcCCcee
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~~ 73 (407)
+..+|++.|-| ||||+...|+..+...+.++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~ 132 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL 132 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 34688888877 799999999999987665553
No 61
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=74.65 E-value=2 Score=41.11 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=20.3
Q ss_pred CCCcEEEEe---cCCChHhHHHHHHHHHH------hcCCce
Q 015421 41 RSIKILAVT---GTNGKSTVVTFVGQMLN------HLGIEA 72 (407)
Q Consensus 41 ~~~~~I~VT---GTnGKTTt~~~l~~iL~------~~g~~~ 72 (407)
...++|+|+ |-.||||++..|+..|. ..|.++
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rV 149 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRI 149 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCE
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeE
Confidence 367899999 77899999999999998 456555
No 62
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=74.27 E-value=2.8 Score=38.89 Aligned_cols=32 Identities=13% Similarity=0.129 Sum_probs=26.2
Q ss_pred CcEEEEe---cCCChHhHHHHHHHHHHhcCCceee
Q 015421 43 IKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (407)
Q Consensus 43 ~~~I~VT---GTnGKTTt~~~l~~iL~~~g~~~~~ 74 (407)
.++|.|+ |-.||||++..|+..|.+.|+++..
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVll 52 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLL 52 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEE
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 3455555 6789999999999999999999853
No 63
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=74.24 E-value=3.2 Score=35.21 Aligned_cols=31 Identities=26% Similarity=0.260 Sum_probs=26.2
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~ 72 (407)
+..+|.|+|. .||||.+.+|+.-|...|+.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v 40 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRA 40 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 3568999986 799999999999998887765
No 64
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=73.67 E-value=3.6 Score=33.94 Aligned_cols=31 Identities=29% Similarity=0.277 Sum_probs=25.4
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHHhcCCce
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~ 72 (407)
+..+|+++|.+ ||||++.+|+..|...|+.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~ 36 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPC 36 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcE
Confidence 35688999874 89999999999998777654
No 65
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=73.57 E-value=2.7 Score=37.01 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.4
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL 65 (407)
+..+|+|+|-| ||||++.+|+..|
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999987 7999999999987
No 66
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=73.42 E-value=3 Score=34.61 Aligned_cols=29 Identities=48% Similarity=0.601 Sum_probs=24.2
Q ss_pred cEEEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 44 ~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~ 72 (407)
+.|.|+|. .||||.+..|+.-|...|+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~ 32 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINN 32 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceE
Confidence 46788876 799999999999998877665
No 67
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=72.99 E-value=2.5 Score=36.00 Aligned_cols=25 Identities=20% Similarity=0.418 Sum_probs=21.6
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+|+|+|.| ||||+..+|...+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45689999986 59999999999886
No 68
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=72.72 E-value=5.4 Score=33.66 Aligned_cols=31 Identities=35% Similarity=0.377 Sum_probs=26.3
Q ss_pred CCCcEEEEecC--CChHhHHHHHHHHHHhcCCc
Q 015421 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIE 71 (407)
Q Consensus 41 ~~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~ 71 (407)
.+..+|+|+|- .||||+..+|+..|...|..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~ 55 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKL 55 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCce
Confidence 45789999997 57999999999999876754
No 69
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=72.36 E-value=3.3 Score=34.44 Aligned_cols=31 Identities=32% Similarity=0.504 Sum_probs=26.0
Q ss_pred CcEEEEecCC--ChHhHHHHHHHHHHhcCCcee
Q 015421 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 43 ~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~~ 73 (407)
+++|+|+|.+ ||||+..+|...+...|++.+
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G 34 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPILRERGLRVA 34 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhhhcCCceE
Confidence 4689999975 799999999999999887763
No 70
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=72.24 E-value=4.5 Score=37.50 Aligned_cols=33 Identities=21% Similarity=0.408 Sum_probs=26.8
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHHhcCCceee
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~~~ 74 (407)
+..+|++.|-| |||||...|+..++..+.++..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l 162 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVI 162 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEE
Confidence 45688888876 6999999999999988766643
No 71
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=72.11 E-value=3.6 Score=34.86 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=26.1
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~ 72 (407)
+..+|.|+|. .||||.+.+|+.-|...++.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 3468999986 799999999999998877665
No 72
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=71.71 E-value=3.8 Score=34.02 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=23.9
Q ss_pred EEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 45 ~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
+|+|+|. .||||.+.+|+.-|...|+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i 32 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVS 32 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 5778776 5899999999999988787653
No 73
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=71.28 E-value=4.5 Score=38.02 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=25.9
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHHhcCCcee
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~~ 73 (407)
+..+|++.|-| |||||...|+..+...+.++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~ 189 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL 189 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEE
Confidence 35688888877 799999999999987665553
No 74
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=71.26 E-value=4.1 Score=39.52 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=26.8
Q ss_pred CcEEEEecCC--ChHhHHHHHHHHHHhcCCcee
Q 015421 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 43 ~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~~ 73 (407)
..+|.++|.+ |||||+.-|+..|...|.++.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVl 132 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVG 132 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 5688888764 799999999999999998874
No 75
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=69.61 E-value=4.3 Score=36.94 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=24.0
Q ss_pred CCCcEEEEecC--CChHhHHHHHHHHHHhc
Q 015421 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHL 68 (407)
Q Consensus 41 ~~~~~I~VTGT--nGKTTt~~~l~~iL~~~ 68 (407)
.+..+|+|+|. .||||++.+|...|...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 45679999996 68999999999999864
No 76
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=69.14 E-value=5.2 Score=35.76 Aligned_cols=33 Identities=33% Similarity=0.543 Sum_probs=30.0
Q ss_pred CCCcEEEEec----CCChHhHHHHHHHHHHhcCCcee
Q 015421 41 RSIKILAVTG----TNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 41 ~~~~~I~VTG----TnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
..+|-|.||| +-||+-|++-|..+|+.+|+++.
T Consensus 21 ~~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt 57 (295)
T 2vo1_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVT 57 (295)
T ss_dssp CCCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ccceEEEEcCCcccccccHHHHHHHHHHHHHCCCcce
Confidence 3689999999 78999999999999999999983
No 77
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=68.37 E-value=3.5 Score=34.83 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=21.0
Q ss_pred EEEEecCCC--hHhHHHHHHHHHHhcC
Q 015421 45 ILAVTGTNG--KSTVVTFVGQMLNHLG 69 (407)
Q Consensus 45 ~I~VTGTnG--KTTt~~~l~~iL~~~g 69 (407)
+|+|+|-|| |||+..+|+..+...|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC
Confidence 577777775 9999999999998666
No 78
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=68.36 E-value=2.7 Score=35.53 Aligned_cols=25 Identities=40% Similarity=0.538 Sum_probs=19.9
Q ss_pred cEEEEecCC--ChHhHHHHHHHHHHhcCCce
Q 015421 44 KILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 44 ~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~ 72 (407)
.+|+|+|.+ ||||++.+|+. + |..+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~---g~~~ 28 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-L---GAYV 28 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-T---TCEE
T ss_pred eEEEEECCCCcCHHHHHHHHHH-C---CCEE
Confidence 478999875 89999999988 5 5544
No 79
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=67.88 E-value=5.9 Score=38.97 Aligned_cols=33 Identities=18% Similarity=0.384 Sum_probs=26.4
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHHhcCCceee
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~~~ 74 (407)
...+|+|.|-| ||||+...|+.++...+.++..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l 326 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVML 326 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEE
Confidence 35588888887 7999999999999877655543
No 80
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=67.27 E-value=6.6 Score=35.92 Aligned_cols=32 Identities=28% Similarity=0.553 Sum_probs=25.6
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHHhcCCcee
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~~ 73 (407)
+..+|+|.|-| ||||+...|+..+...+.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~ 134 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVM 134 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEE
Confidence 34688888776 699999999999997765553
No 81
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=66.53 E-value=6.8 Score=32.44 Aligned_cols=31 Identities=26% Similarity=0.394 Sum_probs=26.3
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~ 72 (407)
+..+|.++|- .||||.+..|+..|...|..+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 4568999987 689999999999999887665
No 82
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=66.42 E-value=4.3 Score=38.06 Aligned_cols=31 Identities=13% Similarity=0.111 Sum_probs=25.8
Q ss_pred CcEEEEe---cCCChHhHHHHHHHHHH--hcCCcee
Q 015421 43 IKILAVT---GTNGKSTVVTFVGQMLN--HLGIEAF 73 (407)
Q Consensus 43 ~~~I~VT---GTnGKTTt~~~l~~iL~--~~g~~~~ 73 (407)
.++|.|+ |-.||||++.-|+..|. +.|+++.
T Consensus 17 ~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVL 52 (354)
T 2woj_A 17 THKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFL 52 (354)
T ss_dssp SCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEE
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEE
Confidence 3455555 77899999999999999 8999884
No 83
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=66.14 E-value=4.4 Score=32.98 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=19.9
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL~ 66 (407)
.+.+|+|+|. .||||++.+|+.-|.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 5678999986 689999999988774
No 84
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=66.10 E-value=4.8 Score=37.03 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=23.7
Q ss_pred CCCcEEEEecCC--ChHhHHHHHHHHHHh
Q 015421 41 RSIKILAVTGTN--GKSTVVTFVGQMLNH 67 (407)
Q Consensus 41 ~~~~~I~VTGTn--GKTTt~~~l~~iL~~ 67 (407)
.+..+|+|.|.| ||||++.+|..++..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 456799999987 899999999999975
No 85
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=65.28 E-value=4.1 Score=34.31 Aligned_cols=24 Identities=17% Similarity=0.404 Sum_probs=20.4
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL 65 (407)
+..+|+++|-| ||||+..+|...+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999987 7999999998875
No 86
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=64.30 E-value=5 Score=32.51 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=19.0
Q ss_pred cEEEEecC--CChHhHHHHHHHHHH
Q 015421 44 KILAVTGT--NGKSTVVTFVGQMLN 66 (407)
Q Consensus 44 ~~I~VTGT--nGKTTt~~~l~~iL~ 66 (407)
.+|.|+|. .||||++..|+.-|.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57889987 579999999987763
No 87
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=64.04 E-value=5 Score=36.69 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=22.2
Q ss_pred CCCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 41 ~~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
.+..+|+|+|.| ||||++.+|..++.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345799999987 59999999999886
No 88
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=63.72 E-value=5 Score=37.31 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=22.7
Q ss_pred cCCChHhHHHHHHHHHHhcCCceee
Q 015421 50 GTNGKSTVVTFVGQMLNHLGIEAFV 74 (407)
Q Consensus 50 GTnGKTTt~~~l~~iL~~~g~~~~~ 74 (407)
|-.||||++.-++..|.+.|.++..
T Consensus 25 GGvGKTt~a~~lA~~la~~g~~vll 49 (334)
T 3iqw_A 25 GGVGKTTTSCSLAIQLAKVRRSVLL 49 (334)
T ss_dssp TTSSHHHHHHHHHHHHTTSSSCEEE
T ss_pred CCccHHHHHHHHHHHHHhCCCcEEE
Confidence 7789999999999999999998854
No 89
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=63.25 E-value=5.2 Score=33.65 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=19.7
Q ss_pred cEEEEecC--CChHhHHHHHHHHHH
Q 015421 44 KILAVTGT--NGKSTVVTFVGQMLN 66 (407)
Q Consensus 44 ~~I~VTGT--nGKTTt~~~l~~iL~ 66 (407)
++|+|||. .||||++.+|+..|.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 38999997 599999999988773
No 90
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=63.17 E-value=8.2 Score=37.27 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=26.5
Q ss_pred CCcEEEEec--CCChHhHHHHHHHHHHhc-CCcee
Q 015421 42 SIKILAVTG--TNGKSTVVTFVGQMLNHL-GIEAF 73 (407)
Q Consensus 42 ~~~~I~VTG--TnGKTTt~~~l~~iL~~~-g~~~~ 73 (407)
+..+|.|+| -.|||||+.-|+..|... |+++.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVl 133 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVL 133 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEE
Confidence 356788875 468999999999999998 98874
No 91
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=63.15 E-value=4.5 Score=34.21 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=17.4
Q ss_pred cEEEEecCC--ChHhHHHHHHH
Q 015421 44 KILAVTGTN--GKSTVVTFVGQ 63 (407)
Q Consensus 44 ~~I~VTGTn--GKTTt~~~l~~ 63 (407)
.+|+++|.+ ||||++.+|+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 579999985 89999999976
No 92
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=62.88 E-value=8.4 Score=35.01 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=26.2
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
+..+|+|+|- .||||++..|+..+...|.++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~ 130 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPL 130 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 3568888874 5799999999999998877664
No 93
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=62.65 E-value=6.9 Score=36.15 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=21.8
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHHh
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~~ 67 (407)
...+|+|+|.+ ||||++..|..+|..
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 34599999975 799999999999874
No 94
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=62.56 E-value=5.5 Score=33.72 Aligned_cols=28 Identities=32% Similarity=0.487 Sum_probs=22.1
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~ 72 (407)
.-.+|+|||- .||||++.+|+..| |..+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l---g~~v 40 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY---GAHV 40 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH---CCEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc---CCEE
Confidence 3468999987 69999999998865 5554
No 95
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=62.04 E-value=5 Score=35.36 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=21.3
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHHHh
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQMLNH 67 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL~~ 67 (407)
+..+|+|||. .||||++.+|+..|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4568999997 5999999999887653
No 96
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=61.85 E-value=2.8 Score=36.52 Aligned_cols=27 Identities=30% Similarity=0.231 Sum_probs=22.1
Q ss_pred EEEe--cCCChHhHHHHHHHHHHhcCCce
Q 015421 46 LAVT--GTNGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 46 I~VT--GTnGKTTt~~~l~~iL~~~g~~~ 72 (407)
|+|+ |-.||||++.-|+..|.+.|+++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~V 31 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKI 31 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 4444 66789999999999999988766
No 97
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=61.67 E-value=6.6 Score=33.62 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=19.2
Q ss_pred CcEEEEecCC--ChHhHHHHHHHHH
Q 015421 43 IKILAVTGTN--GKSTVVTFVGQML 65 (407)
Q Consensus 43 ~~~I~VTGTn--GKTTt~~~l~~iL 65 (407)
..+|+|+|.+ ||||.+.+|+..+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999985 5999999998876
No 98
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=60.30 E-value=6.9 Score=32.95 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=20.7
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL 65 (407)
...+|+|+|-+ ||||++.+|+..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45789999976 6999999999887
No 99
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=60.24 E-value=9.3 Score=35.67 Aligned_cols=33 Identities=27% Similarity=0.293 Sum_probs=26.4
Q ss_pred CCcEEEEe--cCCChHhHHHHHHHHHH--hcCCceee
Q 015421 42 SIKILAVT--GTNGKSTVVTFVGQMLN--HLGIEAFV 74 (407)
Q Consensus 42 ~~~~I~VT--GTnGKTTt~~~l~~iL~--~~g~~~~~ 74 (407)
..+++.++ |-.||||++..++..|. ..|.++..
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vll 53 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLL 53 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEE
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEE
Confidence 34555555 67899999999999999 89998854
No 100
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=60.21 E-value=13 Score=31.50 Aligned_cols=32 Identities=25% Similarity=0.235 Sum_probs=26.0
Q ss_pred CCCcEEEEecC--CChHhHHHHHHHHHH-hcCCce
Q 015421 41 RSIKILAVTGT--NGKSTVVTFVGQMLN-HLGIEA 72 (407)
Q Consensus 41 ~~~~~I~VTGT--nGKTTt~~~l~~iL~-~~g~~~ 72 (407)
....+|.|+|. .||||.+.+|+..|. ..|..+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~ 57 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHA 57 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcE
Confidence 35678999986 689999999999998 677554
No 101
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=60.13 E-value=6.6 Score=32.71 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.5
Q ss_pred EEEEecCCC--hHhHHHHHHHHHH
Q 015421 45 ILAVTGTNG--KSTVVTFVGQMLN 66 (407)
Q Consensus 45 ~I~VTGTnG--KTTt~~~l~~iL~ 66 (407)
.++++|-|| |||+..+|...+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999987 9999999999984
No 102
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=58.84 E-value=11 Score=36.80 Aligned_cols=60 Identities=22% Similarity=0.226 Sum_probs=41.4
Q ss_pred cHHHHHHHhcCCce--e---e------HHHHHHhhC-CCCCcEEEEecC------CChHhHHHHHHHHHHhcCCceee
Q 015421 15 ATGLACLLQSGKRV--M---S------ELDFAAQVI-PRSIKILAVTGT------NGKSTVVTFVGQMLNHLGIEAFV 74 (407)
Q Consensus 15 ~p~l~~a~~~~~~~--l---~------~~~~~~~~~-~~~~~~I~VTGT------nGKTTt~~~l~~iL~~~g~~~~~ 74 (407)
-|.-.-|.+.|++- + . .+..+.++. .++.++|.||.+ -|||||+.-|+..|.+.|.++..
T Consensus 17 ~pI~~ia~~~gi~~~~lE~YG~~kAKv~~~~l~~~~~~~~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~~GkkVLL 94 (557)
T 3pzx_A 17 KPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMV 94 (557)
T ss_dssp CCHHHHHHHTTCCGGGEEEBSSSCEEECHHHHHHTTTSCCCEEEEEEESCCCTTCCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCHHHHHHHcCCCHHHHHHhhCeeEEecHHHhhhhhccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHcCCeEEE
Confidence 35556677777652 1 1 123333332 246789999987 57999999999999999998754
No 103
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=58.65 E-value=10 Score=33.64 Aligned_cols=32 Identities=34% Similarity=0.583 Sum_probs=29.0
Q ss_pred CCCcEEEEecC----CChHhHHHHHHHHHHhcCCce
Q 015421 41 RSIKILAVTGT----NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 41 ~~~~~I~VTGT----nGKTTt~~~l~~iL~~~g~~~ 72 (407)
..+|-|.|||- -||+-|++-|..+|+.+|+++
T Consensus 21 ~~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~V 56 (294)
T 2c5m_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHV 56 (294)
T ss_dssp CCCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCE
T ss_pred eceEEEEEcCccccccchHHHHHHHHHHHHHCCCee
Confidence 46799999984 599999999999999999997
No 104
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=58.30 E-value=9.9 Score=34.60 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=25.9
Q ss_pred CcEEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
..+|+++|- .||||++..|+..+...|.++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~ 130 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVG 130 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 458888865 5799999999999999888774
No 105
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=57.86 E-value=5.4 Score=34.52 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=15.8
Q ss_pred CCcEEEEecCC--ChHhHHHHHH-HHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVG-QMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~-~iL~ 66 (407)
+..+|+|+|-| ||||+..+|. ..+.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 45689999998 6999999998 7764
No 106
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=57.09 E-value=4.9 Score=33.53 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=19.8
Q ss_pred cEEEEecCC--ChHhHHHHHHHHHHh
Q 015421 44 KILAVTGTN--GKSTVVTFVGQMLNH 67 (407)
Q Consensus 44 ~~I~VTGTn--GKTTt~~~l~~iL~~ 67 (407)
.+|+|+|-| ||||+..+|...+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 468888877 599999999988863
No 107
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=57.08 E-value=11 Score=34.89 Aligned_cols=33 Identities=36% Similarity=0.438 Sum_probs=28.0
Q ss_pred CCCcEEEEecCC--ChHhHHHHHHHHHHhcCCcee
Q 015421 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 41 ~~~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~~ 73 (407)
.+.++|+|+|.+ ||||+...|...+...|.++.
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~ 88 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVA 88 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 467899999986 799999999999998887764
No 108
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=56.29 E-value=7.6 Score=32.45 Aligned_cols=29 Identities=31% Similarity=0.539 Sum_probs=22.6
Q ss_pred CCCcEEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 41 ~~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
.+..+|+|+|. .||||++.+|+.. |..+.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~----g~~~i 36 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW----GYPVL 36 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT----TCCEE
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC----CCEEE
Confidence 35678999996 5899999998874 66553
No 109
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=56.26 E-value=11 Score=30.96 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=22.6
Q ss_pred cEEEEecC--CChHhHHHHHHHHHHhcCC
Q 015421 44 KILAVTGT--NGKSTVVTFVGQMLNHLGI 70 (407)
Q Consensus 44 ~~I~VTGT--nGKTTt~~~l~~iL~~~g~ 70 (407)
.+|.|+|. .||||.+..|+.-|...|.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~ 32 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGV 32 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCc
Confidence 47888886 6999999999999987763
No 110
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=55.56 E-value=12 Score=36.85 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=25.9
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
+.++|+|+|. .||||++.-|+..|...|.++.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVl 133 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTC 133 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 3558888876 5799999999999999898874
No 111
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=55.51 E-value=7.4 Score=31.58 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=19.0
Q ss_pred cEEEEecC--CChHhHHHHHHHHHH
Q 015421 44 KILAVTGT--NGKSTVVTFVGQMLN 66 (407)
Q Consensus 44 ~~I~VTGT--nGKTTt~~~l~~iL~ 66 (407)
++|.|+|. .||||.+.+|+.-|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46888886 699999999998773
No 112
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=55.27 E-value=6.5 Score=31.95 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=19.2
Q ss_pred cEEEEecCC--ChHhHHHHHHHHHH
Q 015421 44 KILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 44 ~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
.+|+|+|.+ ||||++.+|+..|.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999875 79999999988764
No 113
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=55.23 E-value=6.4 Score=33.07 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=20.2
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL 65 (407)
+..+|+|+|.+ ||||++.+|...+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45689999986 7999999998876
No 114
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=54.17 E-value=14 Score=32.92 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=23.7
Q ss_pred CCCcEEEEecCC--ChHhHHHHHHHHHHhc
Q 015421 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (407)
Q Consensus 41 ~~~~~I~VTGTn--GKTTt~~~l~~iL~~~ 68 (407)
.+..+++|+|-| ||||+..+|...+...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence 456799999987 8999999999988753
No 115
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=54.13 E-value=11 Score=31.59 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=22.7
Q ss_pred CcEEEEecC--CChHhHHHHHHHHHHhcC
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQMLNHLG 69 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL~~~g 69 (407)
...|.|+|. .||||.+..|+.-|...|
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 357889985 799999999999887655
No 116
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=53.39 E-value=15 Score=33.91 Aligned_cols=33 Identities=27% Similarity=0.402 Sum_probs=27.3
Q ss_pred CCCcEEEEecCCC--hHhHHHHHHHHHHhcCCcee
Q 015421 41 RSIKILAVTGTNG--KSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 41 ~~~~~I~VTGTnG--KTTt~~~l~~iL~~~g~~~~ 73 (407)
.+..+++|+|.+| |||+...|...+...+.++.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~ 87 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVA 87 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEE
Confidence 4678999999986 99999999999987665653
No 117
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=52.93 E-value=14 Score=32.61 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=24.9
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~ 72 (407)
++++|.++|. .||||.+..|+.-|...|+.+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~ 35 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDV 35 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEE
Confidence 3567777774 599999999999998887665
No 118
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=52.42 E-value=28 Score=28.33 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=24.7
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH-hcCCce
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN-HLGIEA 72 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~-~~g~~~ 72 (407)
+...+.+.|.+ ||||++..++..+. ..|..+
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~ 70 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG 70 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE
Confidence 35688999865 69999999999997 667554
No 119
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=52.15 E-value=15 Score=35.35 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=26.1
Q ss_pred CcEEEEecC--CChHhHHHHHHHHHHhcCCceee
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~~ 74 (407)
..+|+|+|- .||||++..|+..|...|.++..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vll 131 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLL 131 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 457888765 58999999999999998887743
No 120
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=51.68 E-value=12 Score=30.76 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=19.4
Q ss_pred CcEEEEecC--CChHhHHHHHHHHH
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQML 65 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL 65 (407)
.++|.++|. .||||.+.+|+.-|
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999987 58999999998866
No 121
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=51.31 E-value=11 Score=31.95 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=21.2
Q ss_pred CCCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 41 ~~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
.+..+|+|+|-+ ||||++.+|...+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 356789999987 69999999987654
No 122
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=50.91 E-value=11 Score=30.28 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=18.2
Q ss_pred EEEEecC--CChHhHHHHHHHHHH
Q 015421 45 ILAVTGT--NGKSTVVTFVGQMLN 66 (407)
Q Consensus 45 ~I~VTGT--nGKTTt~~~l~~iL~ 66 (407)
.|.|+|. .||||.+.+|+.-|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 5788886 699999999998763
No 123
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=50.87 E-value=24 Score=32.72 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=27.8
Q ss_pred CCCcEEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 41 ~~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
.+.++|+|+|. .||||+..-|...|...|.++.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~ 111 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVA 111 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceE
Confidence 35679999975 5799999999999998888874
No 124
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=50.80 E-value=12 Score=30.90 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=19.2
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQM 64 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~i 64 (407)
+.+.|.+||.. ||||++.+|+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45689999974 699999999876
No 125
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=50.72 E-value=22 Score=29.91 Aligned_cols=32 Identities=13% Similarity=-0.047 Sum_probs=22.9
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
+.+++.++|. .||||..--+.+-+..+|+++.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~ 40 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQ 40 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence 4579999999 6666666655555666788874
No 126
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=50.70 E-value=14 Score=30.06 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=20.2
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHH
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL 65 (407)
+..+|+++|. .||||++.+|+..+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4578999997 57999999998876
No 127
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=50.26 E-value=9.2 Score=31.47 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=18.4
Q ss_pred cEEEEecC--CChHhHHHHHHHHH
Q 015421 44 KILAVTGT--NGKSTVVTFVGQML 65 (407)
Q Consensus 44 ~~I~VTGT--nGKTTt~~~l~~iL 65 (407)
++|.|+|. .||||++.+|+.-|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 45888885 79999999998876
No 128
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=50.26 E-value=10 Score=31.98 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=19.6
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHH
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL 65 (407)
...+|+|+|. .||||.+.+|...+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 5679999995 67999999887754
No 129
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=49.72 E-value=16 Score=36.71 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=26.0
Q ss_pred CCcEEEEe--cCCChHhHHHHHHHHHHhcCCcee
Q 015421 42 SIKILAVT--GTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 42 ~~~~I~VT--GTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
..+++.++ |-.||||++..++..|.+.|.++.
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVL 40 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVL 40 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEE
Confidence 34556565 568999999999999999999874
No 130
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=49.44 E-value=13 Score=32.00 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=21.5
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~ 72 (407)
.+-.||+||. .||||++.+++. .|..+
T Consensus 8 ~~~~iglTGgigsGKStv~~~l~~----~g~~v 36 (210)
T 4i1u_A 8 HMYAIGLTGGIGSGKTTVADLFAA----RGASL 36 (210)
T ss_dssp SCCEEEEECCTTSCHHHHHHHHHH----TTCEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHH----CCCcE
Confidence 5678999997 679999998765 47655
No 131
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=49.37 E-value=14 Score=32.01 Aligned_cols=30 Identities=27% Similarity=0.421 Sum_probs=22.8
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHHhcCCceee
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~~~ 74 (407)
...+|+|+|.+ ||||++.+|+..| |+.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l---g~~~~d 46 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF---GFTYLD 46 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH---CCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc---CCceec
Confidence 45689999976 7999999998866 554433
No 132
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=49.28 E-value=17 Score=31.63 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=23.6
Q ss_pred CCcEEEEe--cCCChHhHHHHHHHHHHhcCCce
Q 015421 42 SIKILAVT--GTNGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 42 ~~~~I~VT--GTnGKTTt~~~l~~iL~~~g~~~ 72 (407)
...++.++ |-.||||++.-|+..|. .|.++
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v 44 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKV 44 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeE
Confidence 34555555 67899999999999998 88766
No 133
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=49.10 E-value=12 Score=31.40 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.2
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL 65 (407)
..++|.|+|-+ ||||.+..|+..|
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999975 7999999998877
No 134
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=48.98 E-value=13 Score=30.67 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=19.7
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHH
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL 65 (407)
+.++|.|+|. .||||.+.+|+.-|
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568888886 58999999998866
No 135
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=48.45 E-value=13 Score=34.87 Aligned_cols=31 Identities=29% Similarity=0.292 Sum_probs=24.2
Q ss_pred CCcEEEEecCCC--hHhHHHHHHHHHHhc-CCce
Q 015421 42 SIKILAVTGTNG--KSTVVTFVGQMLNHL-GIEA 72 (407)
Q Consensus 42 ~~~~I~VTGTnG--KTTt~~~l~~iL~~~-g~~~ 72 (407)
+..+|+|+|.|| |||+...+...+... +..+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i 155 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHI 155 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEE
Confidence 445899999876 999999998888765 4333
No 136
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=48.33 E-value=11 Score=31.85 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.2
Q ss_pred CChHhHHHHHHHHHHhcCCcee
Q 015421 52 NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 52 nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
.||||-+.+|+.-|++.|.++.
T Consensus 11 sGKsTq~~~L~~~L~~~g~~v~ 32 (197)
T 3hjn_A 11 SGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCHHHHHHHHHHHHHHCCCcEE
Confidence 6999999999999999998874
No 137
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=47.56 E-value=9.2 Score=36.12 Aligned_cols=28 Identities=11% Similarity=0.262 Sum_probs=23.5
Q ss_pred cCCChHhHHHHHHHHHHhcCCceeeccc
Q 015421 50 GTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (407)
Q Consensus 50 GTnGKTTt~~~l~~iL~~~g~~~~~~g~ 77 (407)
|-.||||++..++..|...|.++.....
T Consensus 11 GG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 11 SGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 5678999999999999999999854443
No 138
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=47.02 E-value=15 Score=30.69 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=19.9
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL 65 (407)
+.++|.++|.. ||||++..|+..|
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45678888865 8999999999877
No 139
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=46.78 E-value=13 Score=34.18 Aligned_cols=28 Identities=21% Similarity=0.579 Sum_probs=24.8
Q ss_pred CCcEEEE----ecCCChHhHHHHHHHHHHhcC
Q 015421 42 SIKILAV----TGTNGKSTVVTFVGQMLNHLG 69 (407)
Q Consensus 42 ~~~~I~V----TGTnGKTTt~~~l~~iL~~~g 69 (407)
+.|+|.| .|-.|||-++.+|...|+..+
T Consensus 35 ~vPVI~VGNitvGGTGKTP~vi~L~~~L~~~~ 66 (315)
T 4ehx_A 35 PVPVISVGNLSVGGSGKTSFVMYLADLLKDKR 66 (315)
T ss_dssp SSCEEEEEESBSSCCSHHHHHHHHHHHTTTSC
T ss_pred CCCEEEECCEEeCCCChHHHHHHHHHHHhhcC
Confidence 5789998 599999999999999998654
No 140
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=46.44 E-value=14 Score=31.29 Aligned_cols=26 Identities=46% Similarity=0.565 Sum_probs=20.4
Q ss_pred CcEEEEecCC--ChHhHHHHHHHHHHhcCCce
Q 015421 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 43 ~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~ 72 (407)
..+|+|+|.. ||||.+.+|+. .|..+
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~----lg~~~ 31 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD----LGINV 31 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH----TTCEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHH----cCCEE
Confidence 4689999974 89999999976 35544
No 141
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=46.23 E-value=24 Score=30.16 Aligned_cols=31 Identities=29% Similarity=0.410 Sum_probs=26.3
Q ss_pred CcEEEEecCC--ChHhHHHHHHHHHHhcCCcee
Q 015421 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 43 ~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~~ 73 (407)
...|.+.|.. ||||.+..|..-|...|+.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~ 38 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQ 38 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcc
Confidence 4678888864 799999999999999998763
No 142
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=45.80 E-value=13 Score=31.42 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=22.1
Q ss_pred CCCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 41 ~~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
.+..+++|.|-| ||||+..+|..++.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 356799999988 79999999999875
No 143
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=45.78 E-value=9.7 Score=32.55 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=15.7
Q ss_pred EEEEecCCChHhHHHHHHHHHH
Q 015421 45 ILAVTGTNGKSTVVTFVGQMLN 66 (407)
Q Consensus 45 ~I~VTGTnGKTTt~~~l~~iL~ 66 (407)
++|..|| ||||.+..|+.-|.
T Consensus 10 l~G~~Gs-GKsT~~~~La~~l~ 30 (222)
T 1zak_A 10 ISGAPAS-GKGTQCELIKTKYQ 30 (222)
T ss_dssp EEESTTS-SHHHHHHHHHHHHC
T ss_pred EECCCCC-CHHHHHHHHHHHhC
Confidence 3444444 89999999998775
No 144
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=45.60 E-value=21 Score=30.57 Aligned_cols=28 Identities=36% Similarity=0.563 Sum_probs=23.7
Q ss_pred CcEEEEecCC--ChHhHHHHHHHHHHhcCC
Q 015421 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGI 70 (407)
Q Consensus 43 ~~~I~VTGTn--GKTTt~~~l~~iL~~~g~ 70 (407)
.+.|.+.|.. ||||.+..|..-|...|+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 32 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGI 32 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 3577777765 699999999999999997
No 145
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=45.53 E-value=24 Score=29.85 Aligned_cols=31 Identities=19% Similarity=0.034 Sum_probs=23.7
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHHhcCCce
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~ 72 (407)
...+++|+|.| ||||++..+...+...+..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v 54 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPC 54 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 45689999986 59999999987666555454
No 146
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=45.28 E-value=18 Score=31.35 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=25.8
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
....|.|.|- .||||.+.+|+..|.. |..+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 5678899987 5799999999999988 77653
No 147
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=45.24 E-value=13 Score=31.34 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=19.2
Q ss_pred CcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 43 IKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 43 ~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
.++++|.|-| ||||+..+|...+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4567888876 89999999988774
No 148
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=45.09 E-value=13 Score=33.28 Aligned_cols=27 Identities=33% Similarity=0.512 Sum_probs=21.0
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~ 72 (407)
...+|+|||. .||||++.+|+. .|+.+
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~----lg~~~ 102 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN----LGAYI 102 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH----HTCEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH----CCCcE
Confidence 4568999997 489999999984 36554
No 149
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=44.19 E-value=15 Score=32.23 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=20.5
Q ss_pred CCCcEEEEecCC--ChHhHHHHHHHHH
Q 015421 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (407)
Q Consensus 41 ~~~~~I~VTGTn--GKTTt~~~l~~iL 65 (407)
.+..+|+|+|-+ ||||+..+|+.-|
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 356799999976 6999999998666
No 150
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=43.38 E-value=25 Score=34.21 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=29.0
Q ss_pred CCCcEEEEecC------CChHhHHHHHHHHHHhcCCce
Q 015421 41 RSIKILAVTGT------NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 41 ~~~~~I~VTGT------nGKTTt~~~l~~iL~~~g~~~ 72 (407)
++.+.|.||+- -|||||+--|.+.|...|.++
T Consensus 41 ~~GklIlVTaItPTPaGEGKtTttiGL~~aL~~lgk~~ 78 (543)
T 3do6_A 41 EDGKLILVTAVTPTPAGEGKTTTSIGLSMSLNRIGKKS 78 (543)
T ss_dssp CCCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCE
T ss_pred CCCeEEEEEecCCCCCCCCccchHHHHHHHHHhcCCee
Confidence 36789999998 599999999999999999886
No 151
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=43.22 E-value=25 Score=33.63 Aligned_cols=27 Identities=44% Similarity=0.411 Sum_probs=21.6
Q ss_pred CCCcEEEEecCC--ChHhHHHHHHHHHHh
Q 015421 41 RSIKILAVTGTN--GKSTVVTFVGQMLNH 67 (407)
Q Consensus 41 ~~~~~I~VTGTn--GKTTt~~~l~~iL~~ 67 (407)
.+..+|+|+|-| |||||...+...+..
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 355689999987 699999988887754
No 152
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=43.12 E-value=11 Score=30.82 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=16.5
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHH
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL 65 (407)
+..+|.|+|. .||||.+..|+.-|
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3468999986 68999999987665
No 153
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=42.44 E-value=31 Score=29.82 Aligned_cols=33 Identities=18% Similarity=0.109 Sum_probs=23.6
Q ss_pred CCCcEEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 41 ~~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
.+..++.+||. .||||..--+.+-+..+|.++.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVl 44 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYL 44 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEE
Confidence 35679999999 6677766666666666787763
No 154
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=42.23 E-value=17 Score=29.95 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=20.2
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
..++|+|+|-+ ||||+..+|...+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45689999976 69999999887654
No 155
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=41.74 E-value=22 Score=29.58 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=19.2
Q ss_pred CcEEEEecC--CChHhHHHHHHHHH
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQML 65 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL 65 (407)
...|.|+|. .||||.+..|+.-|
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 347889886 68999999998876
No 156
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=40.94 E-value=17 Score=35.02 Aligned_cols=30 Identities=17% Similarity=0.440 Sum_probs=24.9
Q ss_pred cEEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 44 ~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
.+|+|+|- .||||++.-|+..+...|.++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVl 131 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPA 131 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 47777764 5899999999999998888874
No 157
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=40.85 E-value=20 Score=29.75 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=19.4
Q ss_pred CcEEEEecC--CChHhHHHHHHHHH
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQML 65 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL 65 (407)
...|.|+|. .||||.+.+|+.-|
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467889986 69999999998876
No 158
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=40.77 E-value=32 Score=31.86 Aligned_cols=32 Identities=28% Similarity=0.442 Sum_probs=26.6
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHHhcCCcee
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~~ 73 (407)
+.++|+|+|.+ ||||+...|...+...+.++.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~ 106 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLS 106 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEE
Confidence 37899999986 699999999998887776653
No 159
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=40.58 E-value=22 Score=28.36 Aligned_cols=26 Identities=27% Similarity=0.558 Sum_probs=19.4
Q ss_pred cEEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 44 ~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
++|.|+|. .||||.+..| +..|+.+.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L----~~~g~~~i 29 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL----KERGAKVI 29 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH----HHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHH----HHCCCcEE
Confidence 46888886 4799999988 56676653
No 160
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=40.38 E-value=27 Score=32.74 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=23.3
Q ss_pred CCCcEEEEecCC--ChHhHHHHHHHHHHhc
Q 015421 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (407)
Q Consensus 41 ~~~~~I~VTGTn--GKTTt~~~l~~iL~~~ 68 (407)
....+|+|+|.| ||||+...|...+...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 356789999976 5999999999988764
No 161
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=40.23 E-value=22 Score=30.89 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=19.9
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL 65 (407)
+..+|+|.|-| ||||.+.+|+.-|
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999987 6999999988766
No 162
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=39.71 E-value=26 Score=30.26 Aligned_cols=32 Identities=19% Similarity=0.431 Sum_probs=27.0
Q ss_pred CCCcEEEEecCC--ChHhHHHHHHHHHHh-cCCce
Q 015421 41 RSIKILAVTGTN--GKSTVVTFVGQMLNH-LGIEA 72 (407)
Q Consensus 41 ~~~~~I~VTGTn--GKTTt~~~l~~iL~~-~g~~~ 72 (407)
.+...|.|.|.. ||||.+..|..-|.. .|+.+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v 53 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNN 53 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCcee
Confidence 356789999864 799999999999999 88765
No 163
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=39.69 E-value=33 Score=29.87 Aligned_cols=29 Identities=34% Similarity=0.583 Sum_probs=25.1
Q ss_pred CcEEEEecCC--ChHhHHHHHHHHHHhcCCc
Q 015421 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIE 71 (407)
Q Consensus 43 ~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~ 71 (407)
...|.|.|-. ||||.+..|..-|...|+.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 4678888864 7999999999999999887
No 164
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=39.69 E-value=20 Score=29.93 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=19.8
Q ss_pred CCCcEEEEecC--CChHhHHHHHHHHH
Q 015421 41 RSIKILAVTGT--NGKSTVVTFVGQML 65 (407)
Q Consensus 41 ~~~~~I~VTGT--nGKTTt~~~l~~iL 65 (407)
.++.+|+|+|. .||||.+..|+.-|
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45678999986 57999999887654
No 165
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=38.87 E-value=21 Score=37.48 Aligned_cols=31 Identities=13% Similarity=0.013 Sum_probs=27.8
Q ss_pred CCcEEEEecC---CChHhHHHHHHHHHHhc-----CCce
Q 015421 42 SIKILAVTGT---NGKSTVVTFVGQMLNHL-----GIEA 72 (407)
Q Consensus 42 ~~~~I~VTGT---nGKTTt~~~l~~iL~~~-----g~~~ 72 (407)
..+.|-|+|| .|||+++.-|..+|++. |+++
T Consensus 33 ~~~~l~I~gt~s~vGKT~vt~gL~r~l~~~~~~~~G~~V 71 (831)
T 4a0g_A 33 NHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKL 71 (831)
T ss_dssp SSCEEEEEESSSSSCHHHHHHHHHHHHHSCSSCCTTCEE
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHHHHhcccccCCceE
Confidence 4678999998 69999999999999999 8876
No 166
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=38.86 E-value=24 Score=28.86 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=18.6
Q ss_pred CcEEEEecC--CChHhHHHHHHHHH
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQML 65 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL 65 (407)
.+.|.++|- .||||++..|+.-|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 457778874 69999999998876
No 167
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=38.75 E-value=20 Score=29.49 Aligned_cols=20 Identities=35% Similarity=0.512 Sum_probs=16.6
Q ss_pred cEEEEecCC--ChHhHHHHHHH
Q 015421 44 KILAVTGTN--GKSTVVTFVGQ 63 (407)
Q Consensus 44 ~~I~VTGTn--GKTTt~~~l~~ 63 (407)
.+|+++|.| ||||+..+|+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 478888876 79999999975
No 168
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=38.47 E-value=10 Score=31.96 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=21.1
Q ss_pred EEEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 45 ~I~VTGT--nGKTTt~~~l~~iL~~~g~~~ 72 (407)
+|+|.|- .||||.+..|...|...|..+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 3455543 499999999999998776554
No 169
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=38.45 E-value=21 Score=28.91 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=21.6
Q ss_pred CCCcEEEEecCC--ChHhHHHHHHHHH
Q 015421 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (407)
Q Consensus 41 ~~~~~I~VTGTn--GKTTt~~~l~~iL 65 (407)
.+..++++.|-| ||||...+|..++
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 356799999987 5999999999988
No 170
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=37.97 E-value=23 Score=29.25 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=17.7
Q ss_pred EEEEecC--CChHhHHHHHHHHHH
Q 015421 45 ILAVTGT--NGKSTVVTFVGQMLN 66 (407)
Q Consensus 45 ~I~VTGT--nGKTTt~~~l~~iL~ 66 (407)
.|+|+|. .||||.+..|+.-|.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 5777776 579999999998774
No 171
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=37.94 E-value=21 Score=29.36 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=18.2
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQM 64 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~i 64 (407)
+..+|+|.|-| ||||+..+|+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 45688999875 799999988654
No 172
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=37.82 E-value=25 Score=28.79 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=18.5
Q ss_pred CcEEEEecC--CChHhHHHHHHHHH
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQML 65 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL 65 (407)
..+|.|+|. .||||.+..|+.-|
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 357888887 48999999988765
No 173
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=37.82 E-value=37 Score=28.13 Aligned_cols=30 Identities=20% Similarity=0.187 Sum_probs=19.5
Q ss_pred CcEEEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~ 72 (407)
..++.+||. .||||...-+..-+...|.++
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v 34 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKV 34 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 357889998 567777644444455567665
No 174
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=37.45 E-value=21 Score=28.90 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=18.8
Q ss_pred cEEEEecC--CChHhHHHHHHHHHH
Q 015421 44 KILAVTGT--NGKSTVVTFVGQMLN 66 (407)
Q Consensus 44 ~~I~VTGT--nGKTTt~~~l~~iL~ 66 (407)
.+|.++|- .||||++..|+.-|.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46788875 799999999988764
No 175
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=37.25 E-value=32 Score=33.85 Aligned_cols=31 Identities=35% Similarity=0.533 Sum_probs=27.5
Q ss_pred CcEEEEec----CCChHhHHHHHHHHHHhcCCcee
Q 015421 43 IKILAVTG----TNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 43 ~~~I~VTG----TnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
.|-|.||| +-||+-|++-|..+|+.+|+++.
T Consensus 3 ~k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~ 37 (535)
T 3nva_A 3 NKYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVT 37 (535)
T ss_dssp CEEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEE
T ss_pred ceEEEEeCccccCcchHHHHHHHHHHHHHCCceEE
Confidence 57899998 45999999999999999999973
No 176
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=36.94 E-value=33 Score=27.27 Aligned_cols=30 Identities=23% Similarity=0.164 Sum_probs=24.4
Q ss_pred CcEEEEecCC--ChHhHHHHHHHHHHhcCCce
Q 015421 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 43 ~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~ 72 (407)
...+++.|.+ ||||...++...+...|.++
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~ 67 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNA 67 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcE
Confidence 4678888875 89999999999998766544
No 177
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=36.73 E-value=24 Score=28.68 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=19.1
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHH
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL 65 (407)
+.+.|.|+|. .||||.+..|+.-|
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3456888886 58999999998776
No 178
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=36.68 E-value=27 Score=29.56 Aligned_cols=25 Identities=16% Similarity=0.225 Sum_probs=19.5
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL~ 66 (407)
....|.++|. .||||.+..|+.-|.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4457778776 589999999988763
No 179
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=36.66 E-value=73 Score=25.94 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=8.3
Q ss_pred HHHHHHHhccCCCcEEEEEC
Q 015421 281 EATCTGLMDLKGHKCVILLG 300 (407)
Q Consensus 281 ~s~~~al~~~~~~~~i~V~g 300 (407)
+.+..+.+.+...++|.++|
T Consensus 27 ~~l~~~~~~i~~a~~I~i~G 46 (187)
T 3sho_A 27 EAIEAAVEAICRADHVIVVG 46 (187)
T ss_dssp HHHHHHHHHHHHCSEEEEEC
T ss_pred HHHHHHHHHHHhCCEEEEEe
Confidence 33333333333334455554
No 180
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=36.45 E-value=23 Score=31.07 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=16.7
Q ss_pred cEEEEecC--CChHhHHHHHHHH
Q 015421 44 KILAVTGT--NGKSTVVTFVGQM 64 (407)
Q Consensus 44 ~~I~VTGT--nGKTTt~~~l~~i 64 (407)
.+|++||. .||||++.+|..-
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~ 24 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999986 6899998887553
No 181
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=36.28 E-value=25 Score=28.94 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=19.6
Q ss_pred CcEEEEecC--CChHhHHHHHHHHHH
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQMLN 66 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL~ 66 (407)
.++|+|+|. .||||.+.+|+.-|.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457888886 589999999998773
No 182
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=36.07 E-value=28 Score=28.52 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=19.2
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHH
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL 65 (407)
...+|.|+|. .||||.+..|+.-|
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 3457888885 68999999998866
No 183
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=35.87 E-value=33 Score=29.65 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=25.5
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHHhc----CCce
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLNHL----GIEA 72 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~~~----g~~~ 72 (407)
+...|.|.|-. ||||.+..|..-|... |+.+
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v 60 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHV 60 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceee
Confidence 45688999875 5999999999999987 8765
No 184
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=35.57 E-value=26 Score=28.56 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=18.5
Q ss_pred CcEEEEecCC--ChHhHHHHHHHHH
Q 015421 43 IKILAVTGTN--GKSTVVTFVGQML 65 (407)
Q Consensus 43 ~~~I~VTGTn--GKTTt~~~l~~iL 65 (407)
...|.++|.. ||||.+.+|+.-|
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578888864 7999999998766
No 185
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=35.08 E-value=23 Score=28.74 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=18.1
Q ss_pred cEEEEecC--CChHhHHHHHHHHHH
Q 015421 44 KILAVTGT--NGKSTVVTFVGQMLN 66 (407)
Q Consensus 44 ~~I~VTGT--nGKTTt~~~l~~iL~ 66 (407)
+.|.|+|. .||||++..|+.-|.
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45778875 589999999987763
No 186
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=35.05 E-value=21 Score=29.08 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=20.2
Q ss_pred cEEEEecCC--ChHhHHHHHHHHHHh
Q 015421 44 KILAVTGTN--GKSTVVTFVGQMLNH 67 (407)
Q Consensus 44 ~~I~VTGTn--GKTTt~~~l~~iL~~ 67 (407)
.+.+|+|-| ||||+...|..+|..
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 388999987 599999999998863
No 187
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=34.85 E-value=44 Score=29.75 Aligned_cols=32 Identities=28% Similarity=0.301 Sum_probs=25.2
Q ss_pred CCCcEEEEecCC--ChHhHHHHHHHHHHhc-CCce
Q 015421 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL-GIEA 72 (407)
Q Consensus 41 ~~~~~I~VTGTn--GKTTt~~~l~~iL~~~-g~~~ 72 (407)
....+++|+|-| ||||....++..+... |.++
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v 67 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKV 67 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeE
Confidence 356789999977 8999999998888754 6444
No 188
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=34.65 E-value=32 Score=29.91 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=22.0
Q ss_pred ecCCChHhHHHHHHHHHHhcCCcee
Q 015421 49 TGTNGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 49 TGTnGKTTt~~~l~~iL~~~g~~~~ 73 (407)
.|-.||||++--+++.|...|+++.
T Consensus 14 kgGvGKTt~a~~la~~l~~~G~~V~ 38 (228)
T 2r8r_A 14 APGVGKTYAMLQAAHAQLRQGVRVM 38 (228)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCcHHHHHHHHHHHHHHCCCCEE
Confidence 4788999999999999999998873
No 189
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=33.72 E-value=46 Score=33.65 Aligned_cols=32 Identities=28% Similarity=0.309 Sum_probs=26.9
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
+..+|.++|. .||||++..|+.-|.+.|..+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v 84 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCY 84 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 4568999986 7999999999999988887653
No 190
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=33.55 E-value=36 Score=33.81 Aligned_cols=31 Identities=29% Similarity=0.337 Sum_probs=25.4
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHHHhcCCce
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~ 72 (407)
...+|.++|. .||||++..|+.-|...|..+
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~ 403 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKV 403 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeE
Confidence 3468889876 579999999999998887655
No 191
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=33.38 E-value=58 Score=27.90 Aligned_cols=33 Identities=18% Similarity=0.090 Sum_probs=21.3
Q ss_pred CCCcEEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 41 ~~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
.+..+..+||+ .||||..--+..-+..+|.++.
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVl 60 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAI 60 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence 34678899999 5555555444444556777774
No 192
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=31.91 E-value=1.7e+02 Score=27.49 Aligned_cols=92 Identities=16% Similarity=0.170 Sum_probs=56.0
Q ss_pred EEEEcCCCCCHHHHHHHHhccC---CCcEEE--EECCCCCCCCCCCCcchHhhhhhccC----cc-EEEEeCCChHHHHH
Q 015421 270 TWVDDSKATNLEATCTGLMDLK---GHKCVI--LLGGQAKVLNGQESNGFEKLIEPLNH----HR-CVITFGYSGVLIWK 339 (407)
Q Consensus 270 ~iidD~~a~np~s~~~al~~~~---~~~~i~--V~g~~~~~~~~~~~~~~~~~~~~l~~----~~-~v~~~g~~~~~~~~ 339 (407)
.++|=.+..+++.+..+++.+- +-+.++ |||+....+. ..+.+.+.+.. .- .+-+.|.+.+.-.+
T Consensus 292 NflDvgG~a~~e~~~~al~~il~d~~v~~ilvni~ggi~~~d~-----vA~gii~a~~~~~~~~Pivvrl~G~n~~~g~~ 366 (395)
T 2fp4_B 292 NFLDLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAI-----IANGITKACRELELKVPLVVRLEGTNVHEAQN 366 (395)
T ss_dssp EEEECCSSCCHHHHHHHHHHHHHCTTCCEEEEEEEESSSCHHH-----HHHHHHHHHHHHTCCSCEEEEEEETTHHHHHH
T ss_pred CcEEECCCCCHHHHHHHHHHHhCCCCCCEEEEEecCCccCcHH-----HHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHH
Confidence 4555446788999999988762 223333 5676543211 12223333321 12 23345878777777
Q ss_pred HHHhCCCCccccccccHHHHHHHHHHhcC
Q 015421 340 TLVNNGLSIPCFAVANMKDAVNHARRMAT 368 (407)
Q Consensus 340 ~l~~~~~~~~~~~~~~~~~a~~~a~~~~~ 368 (407)
.|+..++ .++.++++++|.+.+.+.++
T Consensus 367 ~L~~~gl--~~~~~~~~~~Aa~~~v~~~~ 393 (395)
T 2fp4_B 367 ILTNSGL--PITSAVDLEDAAKKAVASVT 393 (395)
T ss_dssp HHHHTCS--CCEECSSHHHHHHHHHHTTC
T ss_pred HHHHCCC--ceEeCCCHHHHHHHHHHHhh
Confidence 7776653 66777999999999988764
No 193
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=31.86 E-value=2.3e+02 Score=26.49 Aligned_cols=93 Identities=18% Similarity=0.210 Sum_probs=56.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhccC---CCcEEEE--ECCCCCCCCCCCCcchHhhhhhccC----ccEEE-EeCCChHHHH
Q 015421 269 VTWVDDSKATNLEATCTGLMDLK---GHKCVIL--LGGQAKVLNGQESNGFEKLIEPLNH----HRCVI-TFGYSGVLIW 338 (407)
Q Consensus 269 ~~iidD~~a~np~s~~~al~~~~---~~~~i~V--~g~~~~~~~~~~~~~~~~~~~~l~~----~~~v~-~~g~~~~~~~ 338 (407)
..++|=.+..+.+.+..+++.+- .-+.++| ||+...... ..+.+.+.+.. .-.|+ +-|.+.+...
T Consensus 284 aNflD~gG~a~~~~~~~~~~~il~d~~v~~ilvni~ggi~~~~~-----vA~gii~a~~~~~~~~pivvrl~G~n~~~g~ 358 (388)
T 2nu8_B 284 ANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDL-----IADGIIGAVAEVGVNVPVVVRLEGNNAELGA 358 (388)
T ss_dssp CEEEECCSCCCHHHHHHHHHHHHTSTTCCEEEEEEESCSSCHHH-----HHHHHHHHHHHHTCCSCEEEEEESTTHHHHH
T ss_pred CceeEecCCCCHHHHHHHHHHHhcCCCCCEEEEEecCCcCCchH-----HHHHHHHHHHhcCCCCeEEEEeCCCCHHHHH
Confidence 35565446788999999888762 2244443 676543211 12223333321 22233 3487877777
Q ss_pred HHHHhCCCCccccccccHHHHHHHHHHhcC
Q 015421 339 KTLVNNGLSIPCFAVANMKDAVNHARRMAT 368 (407)
Q Consensus 339 ~~l~~~~~~~~~~~~~~~~~a~~~a~~~~~ 368 (407)
+.|+..++ .++.++++++|.+.+.+.++
T Consensus 359 ~~l~~~g~--~~~~~~~~~~aa~~~v~~~~ 386 (388)
T 2nu8_B 359 KKLADSGL--NIIAAKGLTDAAQQVVAAVE 386 (388)
T ss_dssp HHHHTTCS--SEEECSSHHHHHHHHHHHTT
T ss_pred HHHHHCCC--ceecCCCHHHHHHHHHHHhh
Confidence 88876653 66677999999999988764
No 194
>1pgy_A SWA2P; UBA, ubiquitin, auxilin, ubiquitin-associated domain, protein binding; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=31.62 E-value=4.3 Score=25.11 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=22.9
Q ss_pred CCcccccChhhhhHHHHHHHhhhcccC
Q 015421 380 ASFDEFRNFEHRGMVFQELAFFSKHDT 406 (407)
Q Consensus 380 ~s~~~~~~~~~r~~~~~~~~~~l~~~~ 406 (407)
-|++.-..|-+||..||++++.++.++
T Consensus 19 l~id~A~~~Ye~gi~ye~~ie~~kkr~ 45 (47)
T 1pgy_A 19 LSIEEATEFYENDVTYERYLEILKSKQ 45 (47)
T ss_dssp CCSHHHHHHHHHHCSSHHHHHHHHHSC
T ss_pred CChhhHHHHHHcCchHHHHHHHHHHhh
Confidence 577777888899999999999997654
No 195
>3oz7_A Phosphoglycerate kinase; transferase, ATP binding, glycolysi malaria parasite; 2.70A {Plasmodium falciparum} SCOP: c.86.1.1 PDB: 1ltk_A* 3oza_A
Probab=30.93 E-value=1.8e+02 Score=27.49 Aligned_cols=47 Identities=19% Similarity=0.123 Sum_probs=31.6
Q ss_pred CCCcEEEEECCCCCCCCCCCCcchHhhhhhccCccEEEEeCCChHHHHHHHHh
Q 015421 291 KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTLVN 343 (407)
Q Consensus 291 ~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~g~~~~~~~~~l~~ 343 (407)
+.++.++|+|+..=.+ ...-+-..+...|.+++-|..+..+.+.++.
T Consensus 205 p~rP~vaIlGGaKVsd------Ki~vi~nLl~kvD~liiGGgma~tFl~A~~G 251 (417)
T 3oz7_A 205 PQRPLLAILGGAKVSD------KIQLIKNLLDKVDRMIIGGGMAYTFKKVLNN 251 (417)
T ss_dssp CCSSEEEEEECSCSTT------SHHHHHHHHTTCSEEEEETTHHHHHHHHHHC
T ss_pred CCCceEEEEeCccHHH------HHHHHHHHHHhcCEEEeccHHHHHHHHHHcC
Confidence 3578999999764221 2333444556689999999888887776433
No 196
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=29.81 E-value=40 Score=29.04 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=20.6
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL~ 66 (407)
+..+|.|+|. .||||++..|+.-|.
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 3569999995 679999999998773
No 197
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=29.74 E-value=27 Score=29.77 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=20.2
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL 65 (407)
+..+++|.|-| ||||+..+|...+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45689999965 7999999999877
No 198
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=29.35 E-value=30 Score=34.83 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=20.2
Q ss_pred CCcEEEEecCCChHhH-HHHHHHHHHhcCC
Q 015421 42 SIKILAVTGTNGKSTV-VTFVGQMLNHLGI 70 (407)
Q Consensus 42 ~~~~I~VTGTnGKTTt-~~~l~~iL~~~g~ 70 (407)
..-++|-.|| |||+| ++-+.+++...+.
T Consensus 24 ~~lV~a~aGs-GKT~~l~~ri~~l~~~~~~ 52 (647)
T 3lfu_A 24 NLLVLAGAGS-GKTRVLVHRIAWLMSVENC 52 (647)
T ss_dssp CEEEEECTTS-CHHHHHHHHHHHHHHTSCC
T ss_pred CEEEEECCCC-CHHHHHHHHHHHHHHhCCC
Confidence 4557777787 99998 4567778876553
No 199
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=28.57 E-value=36 Score=29.91 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=19.8
Q ss_pred CcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 43 IKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 43 ~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
.++|+++|.. ||||+..+|+..|.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4678888875 79999999998773
No 200
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=28.39 E-value=36 Score=29.19 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=21.0
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+++|.|-| ||||...+|...+.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 56799999988 69999999887764
No 201
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=27.82 E-value=45 Score=28.97 Aligned_cols=32 Identities=31% Similarity=0.408 Sum_probs=23.0
Q ss_pred CcEEEEecCC--ChHhHHHHHHHHHHhcCCceeeccc
Q 015421 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGN 77 (407)
Q Consensus 43 ~~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~~~~g~ 77 (407)
..+|+|+|-. ||||++.+|+.-| |+.+...|.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l---g~~~~d~g~ 42 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL---GARYLDTGA 42 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH---TCEEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCCcccCCc
Confidence 4589999864 8999999998877 444433343
No 202
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=27.76 E-value=47 Score=28.73 Aligned_cols=29 Identities=14% Similarity=-0.004 Sum_probs=22.0
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
+...|.|+|. .||||.+.+|+.-+ |..+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~---g~~~i 58 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH---CYCHL 58 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH---CCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh---CCeEE
Confidence 4568999987 48999999998665 55443
No 203
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=27.47 E-value=30 Score=31.51 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=18.0
Q ss_pred CCcEEEEecCCC--hHhHHHHHHHH
Q 015421 42 SIKILAVTGTNG--KSTVVTFVGQM 64 (407)
Q Consensus 42 ~~~~I~VTGTnG--KTTt~~~l~~i 64 (407)
++++++|||-+| |||....|...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 578999999875 88887776654
No 204
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=27.19 E-value=32 Score=29.00 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=18.0
Q ss_pred cEEEEecC--CChHhHHHHHHHHH
Q 015421 44 KILAVTGT--NGKSTVVTFVGQML 65 (407)
Q Consensus 44 ~~I~VTGT--nGKTTt~~~l~~iL 65 (407)
.+|+|+|. .||||++.+|+..|
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 46889985 69999999988765
No 205
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=27.10 E-value=51 Score=28.15 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=19.5
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL~ 66 (407)
....|.++|. .||||.+.+|+.-|.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456777775 689999999998774
No 206
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=27.09 E-value=35 Score=30.20 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=20.5
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+++|.|-| ||||...+|.-++.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 56799999999 79999998876553
No 207
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=27.04 E-value=53 Score=29.83 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=21.7
Q ss_pred CCCcEEEEecCC--ChHhHHHHHHHHH
Q 015421 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (407)
Q Consensus 41 ~~~~~I~VTGTn--GKTTt~~~l~~iL 65 (407)
.+..+++|.|-| ||||...+|..++
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 356799999976 5999999999998
No 208
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=26.78 E-value=22 Score=35.04 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=18.8
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
....|+|+|-| ||||+..+|...+.
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34458888865 89999988877664
No 209
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=26.41 E-value=46 Score=27.83 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=16.4
Q ss_pred EEEEecC--CChHhHHHHHHHHH
Q 015421 45 ILAVTGT--NGKSTVVTFVGQML 65 (407)
Q Consensus 45 ~I~VTGT--nGKTTt~~~l~~iL 65 (407)
.|+|+|- .||||.+.+|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 3677774 58999999997665
No 210
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=26.26 E-value=76 Score=26.93 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=18.7
Q ss_pred CCcEEEEecCC--ChHhHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQ 63 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~ 63 (407)
+..+++|.|-| ||||+..++..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 56799999987 79999998884
No 211
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=26.23 E-value=43 Score=28.29 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=17.6
Q ss_pred cEEEEecC--CChHhHHHHHHHHH
Q 015421 44 KILAVTGT--NGKSTVVTFVGQML 65 (407)
Q Consensus 44 ~~I~VTGT--nGKTTt~~~l~~iL 65 (407)
..|.++|. .||||.+..|+.-|
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 45667764 69999999999877
No 212
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=26.13 E-value=62 Score=27.00 Aligned_cols=27 Identities=11% Similarity=0.225 Sum_probs=19.8
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHHHhc
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQMLNHL 68 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL~~~ 68 (407)
+.+.|+|+|. .||||+...+..-+...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 5678888875 79999987776665443
No 213
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=26.09 E-value=59 Score=32.45 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=24.6
Q ss_pred CCcEEEEecC--CChHhHHHHHHHHHHhcC-Cce
Q 015421 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLG-IEA 72 (407)
Q Consensus 42 ~~~~I~VTGT--nGKTTt~~~l~~iL~~~g-~~~ 72 (407)
+..+|.+||- .||||++..|+..|...| ..+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~ 428 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSV 428 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCE
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceE
Confidence 3457888864 579999999999999877 554
No 214
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=25.86 E-value=61 Score=27.74 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=29.3
Q ss_pred HHHHhcCCceeeHHHHHHhhC---CCCCcEEEEecC--CChHhHHHHHHHHHH
Q 015421 19 ACLLQSGKRVMSELDFAAQVI---PRSIKILAVTGT--NGKSTVVTFVGQMLN 66 (407)
Q Consensus 19 ~~a~~~~~~~l~~~~~~~~~~---~~~~~~I~VTGT--nGKTTt~~~l~~iL~ 66 (407)
+..+-+++....-...+.... ++ ...|.+.|. .||||.+..|+..+.
T Consensus 32 ~~l~yq~~~~~~f~~~l~~~~~~iPk-kn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 32 QFLRYQQIEFITFLGALKSFLKGTPK-KNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTCTT-CSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHcCcCHHHHHHHHHHHHhcCCc-ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 334444655544444433333 22 237888887 799999999888874
No 215
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=25.10 E-value=40 Score=29.73 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=20.8
Q ss_pred CCCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 41 ~~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
.+..+++|.|-| ||||...+|.-++.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 356799999999 69999988866553
No 216
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=24.74 E-value=49 Score=29.24 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=20.0
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL 65 (407)
+..+++|.|-| ||||...+|.-++
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56799999998 7999999887653
No 217
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=24.73 E-value=48 Score=28.11 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=20.6
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+++|.|-| ||||...+|.-+ .
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl-~ 46 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ-A 46 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH-H
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC-C
Confidence 45689999998 699999999888 5
No 218
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=24.57 E-value=37 Score=29.12 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=19.4
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL 65 (407)
+..+++|.|-| ||||...+|.-++
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56789999998 7999988886554
No 219
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=24.55 E-value=35 Score=32.83 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=20.0
Q ss_pred EEEEecC--CChHhHHHHHHHHHHhcCC
Q 015421 45 ILAVTGT--NGKSTVVTFVGQMLNHLGI 70 (407)
Q Consensus 45 ~I~VTGT--nGKTTt~~~l~~iL~~~g~ 70 (407)
.+.|+|- .|||++...+...|...|.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 5555543 4899999999988888876
No 220
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=24.46 E-value=49 Score=28.79 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=20.6
Q ss_pred CCCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 41 ~~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
.+ .+++|.|-| ||||...+|+-++.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35 799999998 79999998877654
No 221
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=24.32 E-value=43 Score=29.61 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=19.6
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL 65 (407)
+..+++|.|-| ||||...+|.-++
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 56799999998 7999988886554
No 222
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=24.17 E-value=48 Score=32.58 Aligned_cols=51 Identities=10% Similarity=0.052 Sum_probs=33.9
Q ss_pred HHHHHHhcCCc---eeeHHHHH---HhhCC---CCCcEEEEecC--CChHhHHHHHHHHHHh
Q 015421 17 GLACLLQSGKR---VMSELDFA---AQVIP---RSIKILAVTGT--NGKSTVVTFVGQMLNH 67 (407)
Q Consensus 17 ~l~~a~~~~~~---~l~~~~~~---~~~~~---~~~~~I~VTGT--nGKTTt~~~l~~iL~~ 67 (407)
.++....+|.. .+++++.. .+..+ ++..+|.++|- .||||++..|+.-|..
T Consensus 360 ~IR~~Lr~G~~~P~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 360 ELRRRLRVGGEIPEWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp HHHHHHHHTCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 44455555543 35666643 22221 24568999995 6999999999999986
No 223
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=23.93 E-value=51 Score=26.40 Aligned_cols=20 Identities=35% Similarity=0.310 Sum_probs=15.9
Q ss_pred cEEEEecC--CChHhHHHHHHH
Q 015421 44 KILAVTGT--NGKSTVVTFVGQ 63 (407)
Q Consensus 44 ~~I~VTGT--nGKTTt~~~l~~ 63 (407)
.+|.|+|. .||||.+..|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 36777776 589999999877
No 224
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=23.49 E-value=46 Score=29.32 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=20.1
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+++|.|-| ||||...+|.-++.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56799999998 79999888865543
No 225
>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis, transferase, bisubstrate, analog; HET: BIS EPE; 1.60A {Trypanosoma brucei} SCOP: c.86.1.1 PDB: 13pk_A*
Probab=23.22 E-value=3.1e+02 Score=25.90 Aligned_cols=45 Identities=16% Similarity=0.093 Sum_probs=30.6
Q ss_pred CCCcEEEEECCCCCCCCCCCCcchHhhhhhccCccEEEEeCCChHHHHHHH
Q 015421 291 KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVITFGYSGVLIWKTL 341 (407)
Q Consensus 291 ~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~g~~~~~~~~~l 341 (407)
+.++.++|+|+..=.+ ...-+-..+.+.|.+++-|..+..+.+..
T Consensus 203 p~rP~vaIlGGaKVsd------Ki~vi~nLl~kvD~liiGGgma~tFl~A~ 247 (415)
T 16pk_A 203 PPRPLVAIVGGAKVSD------KIQLLDNMLQRIDYLLIGGAMAYTFLKAQ 247 (415)
T ss_dssp CCSSEEEEECSSCSGG------GHHHHHHHGGGCSEEEECTTHHHHHHHHH
T ss_pred CCCCeEEEEcCcchhh------HHHHHHHHHHhcCeeEeCcHHHHHHHHHc
Confidence 3578999999764211 23444455666899999998888777663
No 226
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=23.17 E-value=53 Score=28.64 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=19.5
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQM 64 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~i 64 (407)
+..+++|.|-| ||||...+|.-+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56799999998 799999888765
No 227
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=22.68 E-value=2.1e+02 Score=25.77 Aligned_cols=36 Identities=11% Similarity=-0.023 Sum_probs=27.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhccCCCcEEEEECCCC
Q 015421 267 QGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQA 303 (407)
Q Consensus 267 ~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~g~~~ 303 (407)
.+..++.|+ ..++..+..+++.+..+..++++|...
T Consensus 228 ~g~d~v~d~-~G~~~~~~~~~~~l~~~G~~v~~g~~~ 263 (346)
T 4a2c_A 228 RFNQLILET-AGVPQTVELAVEIAGPHAQLALVGTLH 263 (346)
T ss_dssp CSSEEEEEC-SCSHHHHHHHHHHCCTTCEEEECCCCS
T ss_pred CCccccccc-ccccchhhhhhheecCCeEEEEEeccC
Confidence 455666675 678999999999998766777787654
No 228
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=22.61 E-value=62 Score=28.19 Aligned_cols=22 Identities=18% Similarity=0.293 Sum_probs=16.9
Q ss_pred cEEEEecC--CChHhHHHHHHHHH
Q 015421 44 KILAVTGT--NGKSTVVTFVGQML 65 (407)
Q Consensus 44 ~~I~VTGT--nGKTTt~~~l~~iL 65 (407)
++|.|+|. .||||.+..|+.-+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 46777775 48999999988755
No 229
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=22.58 E-value=84 Score=25.79 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=24.0
Q ss_pred cEEEEecCC--ChHhHHHHHHHHHHhcCCce
Q 015421 44 KILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (407)
Q Consensus 44 ~~I~VTGTn--GKTTt~~~l~~iL~~~g~~~ 72 (407)
+.+.++|.. |||+.+..++.-+...+..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~ 85 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSS 85 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 678888874 89999999999988777665
No 230
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=22.34 E-value=48 Score=28.76 Aligned_cols=25 Identities=24% Similarity=0.503 Sum_probs=19.9
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+++|.|-| ||||...+|.-++.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56799999998 69999888865543
No 231
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=22.13 E-value=66 Score=26.50 Aligned_cols=47 Identities=21% Similarity=0.233 Sum_probs=24.7
Q ss_pred hHHHHHHHHhCCCCc-ccccc-ccHHHHHHHHHHhcCCCCEEEEcCCCC
Q 015421 334 GVLIWKTLVNNGLSI-PCFAV-ANMKDAVNHARRMATNGDAIVLSPGCA 380 (407)
Q Consensus 334 ~~~~~~~l~~~~~~~-~~~~~-~~~~~a~~~a~~~~~~gd~vL~~~G~~ 380 (407)
...+.+.+...|... ....+ +|.++..+.+.+.+...|+|+.++|.+
T Consensus 25 ~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVittGG~g 73 (172)
T 3kbq_A 25 AAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSGGLG 73 (172)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEESCCS
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEcCCCc
Confidence 345667777766532 12223 444443333334344579998876543
No 232
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=21.97 E-value=51 Score=28.63 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=20.8
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
...+++|.|-| ||||...+|.-++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56799999988 69999998877664
No 233
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=21.92 E-value=48 Score=29.07 Aligned_cols=24 Identities=42% Similarity=0.502 Sum_probs=19.5
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL 65 (407)
+..+++|.|-| ||||...+|.-++
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999998 7999988886554
No 234
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=21.91 E-value=49 Score=29.04 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=20.4
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+++|.|-| ||||...+|.-++.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56799999998 69999998866553
No 235
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=21.87 E-value=51 Score=29.23 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=20.3
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+++|.|-| ||||...+|.-++.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56799999998 69999988876653
No 236
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=21.61 E-value=90 Score=25.36 Aligned_cols=45 Identities=13% Similarity=0.133 Sum_probs=23.4
Q ss_pred HHHHHHHHhCCCCc-ccccc-ccHHHHHHHHHHhcC--CCCEEEEcCCC
Q 015421 335 VLIWKTLVNNGLSI-PCFAV-ANMKDAVNHARRMAT--NGDAIVLSPGC 379 (407)
Q Consensus 335 ~~~~~~l~~~~~~~-~~~~~-~~~~~a~~~a~~~~~--~gd~vL~~~G~ 379 (407)
..+.+.++..|... ....+ +|.++..+.+.+.+. .-|+|+.++|.
T Consensus 34 ~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~ 82 (169)
T 1y5e_A 34 QLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGT 82 (169)
T ss_dssp HHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCC
T ss_pred HHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 45566666655422 12233 444444444444444 56999887654
No 237
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=21.60 E-value=49 Score=28.05 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=17.4
Q ss_pred CcEEEEecC--CChHhHHHHHHHHH
Q 015421 43 IKILAVTGT--NGKSTVVTFVGQML 65 (407)
Q Consensus 43 ~~~I~VTGT--nGKTTt~~~l~~iL 65 (407)
...|.|+|. .||||.+..|+.-|
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456677765 58999999998755
No 238
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=21.40 E-value=46 Score=29.47 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=19.4
Q ss_pred CcEEEEecCC--ChHhHHHHHHHHH
Q 015421 43 IKILAVTGTN--GKSTVVTFVGQML 65 (407)
Q Consensus 43 ~~~I~VTGTn--GKTTt~~~l~~iL 65 (407)
..+++|.|.| ||||...+|.-++
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5689999999 6999999887654
No 239
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=21.26 E-value=1.4e+02 Score=27.25 Aligned_cols=57 Identities=11% Similarity=0.103 Sum_probs=35.7
Q ss_pred eeeccccCcCcHHHHHHHhcCCceeeHH----H-------HHHhhCC-----------CCCcEEEEecCC--ChHhHHHH
Q 015421 5 WLFLLEFQLKATGLACLLQSGKRVMSEL----D-------FAAQVIP-----------RSIKILAVTGTN--GKSTVVTF 60 (407)
Q Consensus 5 ~~~~~~~~~~~p~l~~a~~~~~~~l~~~----~-------~~~~~~~-----------~~~~~I~VTGTn--GKTTt~~~ 60 (407)
||+.-...+....+..|.+.++|+++-. + ++...+. -....|.++|.. ||||++..
T Consensus 84 IIltrg~~~peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~~ 163 (314)
T 1ko7_A 84 IIVTRDLEPPEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSETALE 163 (314)
T ss_dssp EEECTTCCCCHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHHHHH
Confidence 5556666667778899999999988521 1 1222110 024578888876 68776654
Q ss_pred H
Q 015421 61 V 61 (407)
Q Consensus 61 l 61 (407)
+
T Consensus 164 l 164 (314)
T 1ko7_A 164 L 164 (314)
T ss_dssp H
T ss_pred H
Confidence 4
No 240
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=21.15 E-value=56 Score=27.42 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=19.6
Q ss_pred CcEEEEec--CCChHhHHHHHHHHH
Q 015421 43 IKILAVTG--TNGKSTVVTFVGQML 65 (407)
Q Consensus 43 ~~~I~VTG--TnGKTTt~~~l~~iL 65 (407)
.++|.|+| -.||||+...|+.-|
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 46899998 578999999999877
No 241
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=21.09 E-value=40 Score=28.87 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=18.7
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQM 64 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~i 64 (407)
+..+|+|.|-+ ||||...+|...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 45799999987 699988888765
No 242
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=21.02 E-value=56 Score=28.28 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=19.0
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL 65 (407)
+..+++|.|-| ||||...+|.-++
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56799999988 6999888886443
No 243
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=20.80 E-value=62 Score=27.06 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=18.1
Q ss_pred EEEEecC--CChHhHHHHHHHHHHhcCCcee
Q 015421 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (407)
Q Consensus 45 ~I~VTGT--nGKTTt~~~l~~iL~~~g~~~~ 73 (407)
.|+|+|- .||||.+.+|+.-+ |..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~---~~~~i 29 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY---GIPHI 29 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS---SCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCcEE
Confidence 3677774 58999999987544 55543
No 244
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=20.69 E-value=1.2e+02 Score=24.83 Aligned_cols=45 Identities=20% Similarity=0.186 Sum_probs=24.4
Q ss_pred HHHHHHHHhCCCCc-ccccc-ccHHHHHHHHHHhcCC--CCEEEEcCCC
Q 015421 335 VLIWKTLVNNGLSI-PCFAV-ANMKDAVNHARRMATN--GDAIVLSPGC 379 (407)
Q Consensus 335 ~~~~~~l~~~~~~~-~~~~~-~~~~~a~~~a~~~~~~--gd~vL~~~G~ 379 (407)
..+...++..|... ....+ +|.++..+.+.+.+.. -|+|++++|.
T Consensus 43 ~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittGG~ 91 (178)
T 2pjk_A 43 DIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGT 91 (178)
T ss_dssp HHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCC
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 45667777776532 22233 4444444444444444 5999887554
No 245
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=20.66 E-value=57 Score=28.72 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=20.5
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+++|.|-| ||||...+|.-++.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 56799999998 79999998876553
No 246
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=20.47 E-value=54 Score=29.27 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=20.2
Q ss_pred CCcEEEEecCC--ChHhHHHHHHHHHH
Q 015421 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (407)
Q Consensus 42 ~~~~I~VTGTn--GKTTt~~~l~~iL~ 66 (407)
+..+++|.|-| ||||...+|.-++.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 56789999999 69999988876553
No 247
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=20.33 E-value=1.3e+02 Score=24.35 Aligned_cols=46 Identities=28% Similarity=0.285 Sum_probs=25.1
Q ss_pred ChHHHHHHHHhCCCCc-cccccccHHHHHHHHH-Hhc-CCCCEEEEcCCC
Q 015421 333 SGVLIWKTLVNNGLSI-PCFAVANMKDAVNHAR-RMA-TNGDAIVLSPGC 379 (407)
Q Consensus 333 ~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~a~-~~~-~~gd~vL~~~G~ 379 (407)
+...+...+++.|... ....++|- ++++.++ +.+ ..-|+|+.++|.
T Consensus 28 n~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG~ 76 (164)
T 3pzy_A 28 CGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGGT 76 (164)
T ss_dssp HHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESCC
T ss_pred HHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCCC
Confidence 4456777777776532 22233333 4444443 333 256999887554
No 248
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=20.12 E-value=1.5e+02 Score=23.76 Aligned_cols=9 Identities=22% Similarity=0.390 Sum_probs=4.4
Q ss_pred cCCCCEEEE
Q 015421 367 ATNGDAIVL 375 (407)
Q Consensus 367 ~~~gd~vL~ 375 (407)
+.++|++++
T Consensus 94 ~~~~d~vI~ 102 (183)
T 2xhz_A 94 VTPQDVVIA 102 (183)
T ss_dssp CCTTCEEEE
T ss_pred CCCCCEEEE
Confidence 445555444
No 249
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=20.11 E-value=73 Score=31.02 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=22.1
Q ss_pred cEEEEecCC--ChHhHHHHHHHHHHhc
Q 015421 44 KILAVTGTN--GKSTVVTFVGQMLNHL 68 (407)
Q Consensus 44 ~~I~VTGTn--GKTTt~~~l~~iL~~~ 68 (407)
.+++|.|-| ||||+..+|.-++...
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~ 56 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPD 56 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 799999998 7999999999988643
Done!