BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015422
         (407 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q56030|ENVE_SALTY Probable lipoprotein EnvE OS=Salmonella typhimurium (strain LT2 /
           SGSC1412 / ATCC 700720) GN=envE PE=4 SV=2
          Length = 173

 Score = 35.8 bits (81), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 319 YIVHLGLPTLGVTTEPELNTVGQASDDLEQIANPVALAPSQSRRYDNRPEVRRQSYIEMQ 378
           Y ++L  P   V T+ ++N+ G   +D EQI     L         NR  +R   +++ Q
Sbjct: 30  YSINLSFP---VITQNQINSGGYYINDAEQIRTTDGLCLDAGPDQQNRLTLRECKHVQSQ 86

Query: 379 IFRNRWKHAVEDDKCWVDPYGQSTNQ 404
           +F        + +KC +D  GQ T +
Sbjct: 87  LFSFHRDRITQGEKC-LDAAGQGTKE 111


>sp|Q98636|VP4_ROTEL Outer capsid protein VP4 OS=Rotavirus A (isolate Equine/United
           Kingdom/L338/1988
           G13-P12[18]-I6-Rx-Cx-M6-A6-Nx-Tx-Ex-Hx) PE=2 SV=1
          Length = 776

 Score = 33.5 bits (75), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 10/108 (9%)

Query: 147 VDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIFLWDE--DIGVENFNPRR 204
           VD W  L   DR + V   N T  W A   + PD+  E     L+ +   I V N +  +
Sbjct: 78  VDYWMLLAPTDRGVVVEGTNNTNRWLAIILVEPDVPTEERTYTLFGQQAQITVANDSQLK 137

Query: 205 YLSIVKDEGLEISQPALDPVKSEVHHPITARRRNS--KAHRRMYKYKG 250
           +  IV      +S+  LD   ++    ++A +  +  K   R+Y Y G
Sbjct: 138 WKFIV------VSKQTLDGAYAQYGPLLSATKLYAVMKHSGRIYTYSG 179


>sp|B7IE34|DER_THEAB GTPase Der OS=Thermosipho africanus (strain TCF52B) GN=der PE=3
           SV=1
          Length = 439

 Score = 33.1 bits (74), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 22/150 (14%)

Query: 111 LLAIAAGIKQKKIVD----------QIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAI 160
           L    AG+++K  VD          + ++   + D VV+L      +D  + +   D+ I
Sbjct: 232 LFVDTAGLRRKSKVDYKSLDMYSNVRSIKSIENSDVVVIL------IDAIEGITHQDQRI 285

Query: 161 HVSAANQTKWWFAKRFLHPDIVAEYNY-----IFLWDEDIGVENFNPRRYLSIVKDEGLE 215
              A N+ K      F   D++  + Y     I  ++E +   N++P  +LS +  +G++
Sbjct: 286 AGIAENRGKATIVA-FNKIDLIKNFKYKKEEFIDQFNEKLYFINYSPLIFLSAINKKGID 344

Query: 216 ISQPALDPVKSEVHHPITARRRNSKAHRRM 245
               A+D     +H+ +     NS   R M
Sbjct: 345 NLINAIDEAYKSLHYRVQTSAVNSAIQRMM 374


>sp|Q2T9M9|CK063_BOVIN Uncharacterized protein C11orf63 homolog OS=Bos taurus PE=2 SV=1
          Length = 773

 Score = 32.7 bits (73), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 6/48 (12%)

Query: 66  CKNQQCRLPGTEALPEGIVSKTSNLEMRPLWSSPSKLNNQRPPMNLLA 113
            K ++ +L   EALPE + S T NL + PL+  PSK     P M+L A
Sbjct: 128 SKKEEGKLLPVEALPESVDSSTENLTLNPLY--PSK----EPSMDLSA 169


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.134    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 159,037,924
Number of Sequences: 539616
Number of extensions: 6740473
Number of successful extensions: 13179
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 13178
Number of HSP's gapped (non-prelim): 6
length of query: 407
length of database: 191,569,459
effective HSP length: 120
effective length of query: 287
effective length of database: 126,815,539
effective search space: 36396059693
effective search space used: 36396059693
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)