Query 015422
Match_columns 407
No_of_seqs 142 out of 161
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 06:09:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015422.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015422hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05212 DUF707: Protein of un 100.0 4E-130 8E-135 947.9 25.6 290 70-390 4-293 (294)
2 cd04185 GT_2_like_b Subfamily 94.6 0.12 2.6E-06 45.5 6.9 102 183-329 78-179 (202)
3 cd04186 GT_2_like_c Subfamily 93.9 0.14 3E-06 42.5 5.6 92 184-324 74-166 (166)
4 TIGR01556 rhamnosyltran L-rham 93.4 0.27 5.9E-06 46.3 7.3 128 183-324 72-202 (281)
5 cd02510 pp-GalNAc-T pp-GalNAc- 90.3 3.7 8E-05 39.3 11.1 139 183-325 82-227 (299)
6 cd02526 GT2_RfbF_like RfbF is 89.5 0.71 1.5E-05 41.4 5.3 127 184-324 75-205 (237)
7 cd02525 Succinoglycan_BP_ExoA 88.2 1.6 3.6E-05 38.9 6.7 128 183-325 80-210 (249)
8 cd02520 Glucosylceramide_synth 87.7 0.65 1.4E-05 41.3 3.8 92 183-323 85-176 (196)
9 PF13641 Glyco_tranf_2_3: Glyc 85.8 1.1 2.4E-05 40.0 4.3 128 183-327 85-214 (228)
10 cd06421 CESA_CelA_like CESA_Ce 83.6 0.86 1.9E-05 40.5 2.5 129 183-328 83-216 (234)
11 cd04195 GT2_AmsE_like GT2_AmsE 79.1 1.5 3.2E-05 38.3 2.4 119 182-321 78-199 (201)
12 COG1216 Predicted glycosyltran 77.5 11 0.00024 36.6 8.1 139 185-330 85-227 (305)
13 cd06442 DPM1_like DPM1_like re 76.2 3.4 7.5E-05 36.6 3.9 36 183-218 77-112 (224)
14 cd06437 CESA_CaSu_A2 Cellulose 75.3 2.9 6.3E-05 37.9 3.3 133 183-329 86-219 (232)
15 PLN02726 dolichyl-phosphate be 74.5 5.2 0.00011 37.0 4.8 38 183-220 92-129 (243)
16 cd06433 GT_2_WfgS_like WfgS an 73.6 5.6 0.00012 33.8 4.4 37 183-219 74-111 (202)
17 PF01762 Galactosyl_T: Galacto 68.2 26 0.00057 31.8 7.8 177 92-306 6-186 (195)
18 cd02522 GT_2_like_a GT_2_like_ 61.4 19 0.00041 31.8 5.4 41 183-223 71-111 (221)
19 PF13506 Glyco_transf_21: Glyc 61.3 6 0.00013 36.1 2.2 125 183-326 30-156 (175)
20 cd06434 GT2_HAS Hyaluronan syn 61.2 4.6 9.9E-05 36.2 1.4 41 183-223 76-116 (235)
21 cd04188 DPG_synthase DPG_synth 60.1 6.1 0.00013 35.2 2.1 37 183-219 81-117 (211)
22 PF00535 Glycos_transf_2: Glyc 59.2 7.3 0.00016 31.7 2.2 38 183-220 77-114 (169)
23 cd06913 beta3GnTL1_like Beta 1 57.2 22 0.00047 31.9 5.1 124 182-324 82-210 (219)
24 cd06439 CESA_like_1 CESA_like_ 56.9 7.6 0.00016 35.3 2.1 40 183-222 108-147 (251)
25 cd04187 DPM1_like_bac Bacteria 51.9 15 0.00032 31.8 3.0 34 183-217 79-112 (181)
26 cd06435 CESA_NdvC_like NdvC_li 50.6 9.2 0.0002 34.5 1.6 123 184-320 84-206 (236)
27 PF13632 Glyco_trans_2_3: Glyc 50.6 17 0.00036 32.0 3.2 125 187-327 1-128 (193)
28 PTZ00260 dolichyl-phosphate be 48.9 29 0.00063 34.8 4.9 192 107-318 69-287 (333)
29 PF02434 Fringe: Fringe-like; 48.8 16 0.00035 35.5 3.0 126 182-332 84-216 (252)
30 PF12621 DUF3779: Phosphate me 45.1 19 0.00041 30.4 2.5 52 174-230 34-87 (95)
31 PRK11204 N-glycosyltransferase 44.5 33 0.00072 34.5 4.6 201 107-329 53-266 (420)
32 PF09451 ATG27: Autophagy-rela 38.9 33 0.00072 33.7 3.5 28 17-44 200-227 (268)
33 cd00761 Glyco_tranf_GTA_type G 37.4 28 0.00061 27.3 2.3 22 184-205 77-98 (156)
34 PF07976 Phe_hydrox_dim: Pheno 35.8 40 0.00087 30.9 3.4 71 77-157 34-125 (169)
35 cd06423 CESA_like CESA_like is 35.6 23 0.0005 28.6 1.6 38 184-221 78-116 (180)
36 cd04184 GT2_RfbC_Mx_like Myxoc 34.8 31 0.00067 30.0 2.4 37 183-219 82-119 (202)
37 PF10111 Glyco_tranf_2_2: Glyc 34.7 68 0.0015 31.0 4.9 203 112-325 2-224 (281)
38 cd04192 GT_2_like_e Subfamily 31.9 36 0.00077 30.0 2.3 38 183-220 81-118 (229)
39 PF09258 Glyco_transf_64: Glyc 31.9 66 0.0014 31.3 4.3 95 117-212 8-103 (247)
40 PF12996 DUF3880: DUF based on 30.8 25 0.00053 28.4 1.0 25 179-213 13-37 (79)
41 cd04196 GT_2_like_d Subfamily 30.2 44 0.00096 29.0 2.6 47 273-324 158-204 (214)
42 cd04190 Chitin_synth_C C-termi 30.1 77 0.0017 29.6 4.3 30 182-211 71-100 (244)
43 PF09828 Chrome_Resist: Chroma 29.1 37 0.00079 31.2 1.9 55 170-231 15-87 (135)
44 cd06427 CESA_like_2 CESA_like_ 28.2 54 0.0012 30.1 2.9 38 183-220 83-122 (241)
45 cd00505 Glyco_transf_8 Members 27.2 1.1E+02 0.0023 28.9 4.8 89 108-208 30-118 (246)
46 TIGR03469 HonB hopene-associat 27.2 58 0.0013 32.9 3.2 33 185-217 134-166 (384)
47 PRK10927 essential cell divisi 26.2 50 0.0011 34.2 2.5 27 21-47 33-59 (319)
48 TIGR02165 cas_GSU0054 CRISPR-a 25.5 14 0.00029 38.8 -1.7 33 258-302 75-107 (465)
49 cd06420 GT2_Chondriotin_Pol_N 24.6 51 0.0011 28.1 1.9 26 183-208 78-103 (182)
50 PF14538 Raptor_N: Raptor N-te 23.1 46 0.001 30.6 1.4 11 136-146 90-100 (154)
51 PLN02867 Probable galacturonos 23.0 38 0.00083 37.2 1.0 34 174-208 334-367 (535)
52 KOG2264 Exostosin EXT1L [Signa 22.1 1E+02 0.0022 34.8 4.0 96 117-213 632-753 (907)
53 KOG0747 Putative NAD+-dependen 21.1 1.1E+02 0.0024 31.9 3.7 75 108-182 7-82 (331)
No 1
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=100.00 E-value=3.6e-130 Score=947.92 Aligned_cols=290 Identities=64% Similarity=1.176 Sum_probs=279.2
Q ss_pred cCCCCCCCCCCCCceecCCCCccccCCCCCCCCCCCCCCCcEEEEEeccccccchhhHhhcCCCCCcEEEEEEecCccCc
Q 015422 70 QCRLPGTEALPEGIVSKTSNLEMRPLWSSPSKLNNQRPPMNLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDE 149 (407)
Q Consensus 70 q~~p~g~e~LP~GIv~~~sd~~lr~Lwg~~~~~~~~~~~k~Lla~~VG~kqk~~Vd~~v~kf~~~nF~vmLfhYDg~vd~ 149 (407)
+|+|+|+|+||+|||+++|||+||||||.|+++. +.++|||||||||+|||++||++|+|| ++|||||||||||+||+
T Consensus 4 ~~~p~g~e~Lp~giv~~~sd~~~r~lw~~p~~~~-~~~~k~Lla~~VG~kqk~~vd~~v~Kf-~~nF~i~LfhYDg~vd~ 81 (294)
T PF05212_consen 4 PCNPRGAERLPPGIVVRESDLELRPLWGNPSEDL-PKKPKYLLAMTVGIKQKDNVDAIVKKF-SDNFDIMLFHYDGRVDE 81 (294)
T ss_pred CCCCCccccCCCCccccCCCceeeecCCCccccc-cCCCceEEEEEecHHHHhhhhHHHhhh-ccCceEEEEEecCCcCc
Confidence 8999999999999999999999999999999885 568899999999999999999999999 89999999999999999
Q ss_pred ccccccccceeEEeeecccchhhhccccChhhhccccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCCCCCCCccc
Q 015422 150 WKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVH 229 (407)
Q Consensus 150 W~d~ews~~aiHvsa~kQtKwwfakRfLHPdiv~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~ 229 (407)
|++||||++||||++.|||||||||||||||||++|||||||||||+||+|+|+|||+||++|||||||||||+++|++|
T Consensus 82 w~~~~ws~~aiHv~~~kqtKww~akrfLHPdiv~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQPALd~~~~~~~ 161 (294)
T PF05212_consen 82 WDDFEWSDRAIHVSARKQTKWWFAKRFLHPDIVAPYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQPALDPDSSEIH 161 (294)
T ss_pred hhhcccccceEEEEeccceEEeehhhhcChhhhccceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCcccCCCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998999
Q ss_pred ccccccccCcccceeeecccCCCCCCCCCCCCCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCC
Q 015422 230 HPITARRRNSKAHRRMYKYKGSGRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRT 309 (407)
Q Consensus 230 h~iT~R~~~~~vHr~~~~~~~~~~C~~~~~~ppcTgFVEiMAPVFSR~AwrCvw~miqNDLvhGWGLD~~w~~caqg~~~ 309 (407)
|+||+|++.++|||. .++.+.|.+++++||||||||||||||||+|||||||||||||+|||||||+|+||+ ++++
T Consensus 162 ~~iT~R~~~~~vhr~---~~~~~~~~~~~~~ppct~fVEiMAPVFSr~Awrcvw~miqNDLvhGWGLDf~~~~c~-~~~~ 237 (294)
T PF05212_consen 162 HPITKRRPDSEVHRK---TRGGPRCCDDSTGPPCTGFVEIMAPVFSRAAWRCVWHMIQNDLVHGWGLDFKWGYCA-GDRH 237 (294)
T ss_pred eeEEeecCCceeEec---cCCCCCcCCCCCCCCcceEEEEecceechHHHHHHHhcccCCCccccchhhhHHHHh-cccc
Confidence 999999999999994 567788888999999999999999999999999999999999999999999999999 6899
Q ss_pred CcEEEEeeeeEEeccCCCCCCCCCcccccccCCCchhhhhccccccCCCCCCCCCChhHHHhhhHHHHHHHHHHHHHhHh
Q 015422 310 KNVGVVDSEYIVHLGLPTLGVTTEPELNTVGQASDDLEQIANPVALAPSQSRRYDNRPEVRRQSYIEMQIFRNRWKHAVE 389 (407)
Q Consensus 310 ~kiGVVDa~~VvH~giptLg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VR~rs~~E~~~f~~Rw~~A~~ 389 (407)
+||||||||||+|+++|||||++.++ .+.++|.+||+||++||++|++||++|++
T Consensus 238 ~kiGVVDs~~VvH~gvptLG~~~~~~-------------------------~~~~~~~~Vr~r~~~E~~~F~~R~~~a~~ 292 (294)
T PF05212_consen 238 KKIGVVDSQYVVHTGVPTLGGQGNSE-------------------------KGKDPREEVRRRSFAEMRIFQKRWANAVK 292 (294)
T ss_pred ccEEEEeeEEEEEcCCCcCCCccccc-------------------------cCCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988764 24578999999999999999999999998
Q ss_pred c
Q 015422 390 D 390 (407)
Q Consensus 390 ~ 390 (407)
|
T Consensus 293 ~ 293 (294)
T PF05212_consen 293 E 293 (294)
T ss_pred c
Confidence 6
No 2
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.58 E-value=0.12 Score=45.47 Aligned_cols=102 Identities=18% Similarity=0.259 Sum_probs=68.5
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCCCCCCCcccccccccccCcccceeeecccCCCCCCCCCCCCC
Q 015422 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAPP 262 (407)
Q Consensus 183 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~~vHr~~~~~~~~~~C~~~~~~pp 262 (407)
+.+|||++.|+|..++..-++++.+.+++.++.+..|..-...+ +
T Consensus 78 ~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-----------------------------------~ 122 (202)
T cd04185 78 LGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDPDG-----------------------------------S 122 (202)
T ss_pred cCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcCCC-----------------------------------c
Confidence 57999999999999998888888887764455444443221110 1
Q ss_pred ccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEeccCCCCC
Q 015422 263 CIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPTLG 329 (407)
Q Consensus 263 cTgFVEiMAPVFSR~AwrCvw~miqNDLvhGWGLD~~w~~caqg~~~~kiGVVDa~~VvH~giptLg 329 (407)
+.++ +++|++|+.+ . .+.+.-..||=|.-+.+-+. ..+.++ .+.+..+.|....+.+
T Consensus 123 ~~~~------~~~~~~~~~~-g-~~~~~~~~~~eD~~~~~r~~-~~G~~i-~~~~~~~~h~~~~~~~ 179 (202)
T cd04185 123 FVGV------LISRRVVEKI-G-LPDKEFFIWGDDTEYTLRAS-KAGPGI-YVPDAVVVHKTAINKG 179 (202)
T ss_pred eEEE------EEeHHHHHHh-C-CCChhhhccchHHHHHHHHH-HcCCcE-EecceEEEEccccccc
Confidence 1222 4889999876 3 34454567888887765443 245789 9999999999855443
No 3
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.93 E-value=0.14 Score=42.45 Aligned_cols=92 Identities=20% Similarity=0.150 Sum_probs=61.6
Q ss_pred cccEEEEecccccCCCCChHHHHHHHHHh-CCcccCCCCCCCCCcccccccccccCcccceeeecccCCCCCCCCCCCCC
Q 015422 184 EYNYIFLWDEDIGVENFNPRRYLSIVKDE-GLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAPP 262 (407)
Q Consensus 184 ~YdYIflwDdDL~vd~f~i~ry~~Ivr~~-gLeISQPALd~~s~~i~h~iT~R~~~~~vHr~~~~~~~~~~C~~~~~~pp 262 (407)
.+|||++.|+|..++...+.++.+.+.+. +..+..+.
T Consensus 74 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------------------------ 111 (166)
T cd04186 74 KGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK------------------------------------------ 111 (166)
T ss_pred CCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc------------------------------------------
Confidence 79999999999999887777777754432 22222222
Q ss_pred ccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEecc
Q 015422 263 CIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLG 324 (407)
Q Consensus 263 cTgFVEiMAPVFSR~AwrCvw~miqNDLvhGWGLD~~w~~caqg~~~~kiGVVDa~~VvH~g 324 (407)
+=.-+.+|++++++.+ . .+++.-..+|-|..+...+. ..+.+|..+....+.|.+
T Consensus 112 ----~~~~~~~~~~~~~~~~-~-~~~~~~~~~~eD~~~~~~~~-~~g~~i~~~~~~~~~h~~ 166 (166)
T cd04186 112 ----VSGAFLLVRREVFEEV-G-GFDEDFFLYYEDVDLCLRAR-LAGYRVLYVPQAVIYHHG 166 (166)
T ss_pred ----CceeeEeeeHHHHHHc-C-CCChhhhccccHHHHHHHHH-HcCCeEEEccceEEEecC
Confidence 0012458899999876 2 23443334777887765443 245799999999999964
No 4
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=93.44 E-value=0.27 Score=46.29 Aligned_cols=128 Identities=15% Similarity=0.065 Sum_probs=73.4
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHHh--CCcccCCCC-CCCCCcccccccccccCcccceeeecccCCCCCCCCCC
Q 015422 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDE--GLEISQPAL-DPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYST 259 (407)
Q Consensus 183 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~--gLeISQPAL-d~~s~~i~h~iT~R~~~~~vHr~~~~~~~~~~C~~~~~ 259 (407)
+.+|||++.|+|..++.-.++++++.+++. +.-+..|.. +.+.. ...+...... . .-+.. ... ..+
T Consensus 72 ~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~-------~~~-~~~ 140 (281)
T TIGR01556 72 RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTS-RRLPAIHLDG-L-LLRQI-------SLD-GLT 140 (281)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCc-ccCCceeecc-c-ceeee-------ccc-ccC
Confidence 379999999999999998999999988876 567777764 33221 1122111111 0 00000 000 001
Q ss_pred CCCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEecc
Q 015422 260 APPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLG 324 (407)
Q Consensus 260 ~ppcTgFVEiMAPVFSR~AwrCvw~miqNDLvhGWGLD~~w~~caqg~~~~kiGVVDa~~VvH~g 324 (407)
.+.-+.++=.-..+++|++++.+ .+ +++..-.++.|.-|..-+. ..+.+|.++....+.|..
T Consensus 141 ~~~~~~~~~~sg~li~~~~~~~i-G~-fde~~fi~~~D~e~~~R~~-~~G~~i~~~~~~~~~H~~ 202 (281)
T TIGR01556 141 TPQKTSFLISSGCLITREVYQRL-GM-MDEELFIDHVDTEWSLRAQ-NYGIPLYIDPDIVLEHRI 202 (281)
T ss_pred CceeccEEEcCcceeeHHHHHHh-CC-ccHhhcccchHHHHHHHHH-HCCCEEEEeCCEEEEEec
Confidence 11111111001236899999987 44 3343334667887754333 235789999999999974
No 5
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=90.26 E-value=3.7 Score=39.25 Aligned_cols=139 Identities=14% Similarity=0.088 Sum_probs=76.8
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCCCCCCC-ccccccccc-cc---CcccceeeecccCCCCCCCC
Q 015422 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKS-EVHHPITAR-RR---NSKAHRRMYKYKGSGRCDDY 257 (407)
Q Consensus 183 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~-~i~h~iT~R-~~---~~~vHr~~~~~~~~~~C~~~ 257 (407)
+..|||++.|.|..++..-++++++.+.+..-.+.-|.+..-.+ .+.+.-... .. ...++...........+...
T Consensus 82 A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (299)
T cd02510 82 ATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEERRRES 161 (299)
T ss_pred ccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCHHHhhhcC
Confidence 67999999999999999999999999998877777777653221 122221111 00 00011000000000000111
Q ss_pred CCCCCccceEEeecccccHHHHHHHhhhhcCCCcccch-hhhhhh-hhhcCCCCCcEEEEeeeeEEeccC
Q 015422 258 STAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWG-LDIQLG-YCAQGDRTKNVGVVDSEYIVHLGL 325 (407)
Q Consensus 258 ~~~ppcTgFVEiMAPVFSR~AwrCvw~miqNDLvhGWG-LD~~w~-~caqg~~~~kiGVVDa~~VvH~gi 325 (407)
+..|..+.++-..+=+|+|++|.-+ .. +......|| =|.-+. ++.+ .+.+|-++-...|.|...
T Consensus 162 ~~~~~~~~~~~g~~~~irr~~~~~v-Gg-fDe~~~~~~~ED~Dl~~R~~~--~G~~i~~~p~a~v~H~~~ 227 (299)
T cd02510 162 PTAPIRSPTMAGGLFAIDREWFLEL-GG-YDEGMDIWGGENLELSFKVWQ--CGGSIEIVPCSRVGHIFR 227 (299)
T ss_pred CCCCccCccccceeeEEEHHHHHHh-CC-CCCcccccCchhHHHHHHHHH--cCCeEEEeeccEEEEecc
Confidence 1122223333333446889999887 33 344455665 354442 2222 246899999999999864
No 6
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=89.53 E-value=0.71 Score=41.38 Aligned_cols=127 Identities=14% Similarity=0.131 Sum_probs=62.6
Q ss_pred cccEEEEecccccCCCCChHHHH---HHHH-HhCCcccCCCCCCCCCcccccccccccCcccceeeecccCCCCCCCCCC
Q 015422 184 EYNYIFLWDEDIGVENFNPRRYL---SIVK-DEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYST 259 (407)
Q Consensus 184 ~YdYIflwDdDL~vd~f~i~ry~---~Ivr-~~gLeISQPALd~~s~~i~h~iT~R~~~~~vHr~~~~~~~~~~C~~~~~ 259 (407)
.||||++.|+|..++...+++++ +... ...+-+..|.............. +.....+ .. .. +.. .
T Consensus 75 ~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~--~~----~~~--~ 143 (237)
T cd02526 75 GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGV-RKSGYKL--RI--QK----EGE--E 143 (237)
T ss_pred CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccce-eccCccc--ee--cc----ccc--C
Confidence 68999999999999988888885 2222 22344555543322111111110 0000000 00 00 000 0
Q ss_pred CCCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEecc
Q 015422 260 APPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLG 324 (407)
Q Consensus 260 ~ppcTgFVEiMAPVFSR~AwrCvw~miqNDLvhGWGLD~~w~~caqg~~~~kiGVVDa~~VvH~g 324 (407)
...-..++=.-+-+|+|++++.+ ..+ .+.....|-|+.+...+. ..+.++..+....|.|..
T Consensus 144 ~~~~~~~~~~~~~~~rr~~~~~~-ggf-d~~~~~~~eD~d~~~r~~-~~G~~~~~~~~~~v~h~~ 205 (237)
T cd02526 144 GLKEVDFLITSGSLISLEALEKV-GGF-DEDLFIDYVDTEWCLRAR-SKGYKIYVVPDAVLKHEL 205 (237)
T ss_pred CceEeeeeeccceEEcHHHHHHh-CCC-CHHHcCccchHHHHHHHH-HcCCcEEEEcCeEEEecc
Confidence 00000011011125899999887 332 222223455777654443 245689998888888864
No 7
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=88.23 E-value=1.6 Score=38.90 Aligned_cols=128 Identities=9% Similarity=-0.026 Sum_probs=69.0
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCCCCCCCcccccccccccCcccceeeecccCCCCCCCC-C-CC
Q 015422 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDY-S-TA 260 (407)
Q Consensus 183 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~~vHr~~~~~~~~~~C~~~-~-~~ 260 (407)
+.+|||.+.|+|..++...++++++..++.+..+.+................+...+.+. ......+... . ..
T Consensus 80 a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 154 (249)
T cd02525 80 SRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLG-----SGGSAYRGGAVKIGY 154 (249)
T ss_pred hCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhc-----cCCcccccccccccc
Confidence 479999999999999998899999888888877766554321111111100000000000 0000000000 0 00
Q ss_pred CCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhh-hhhcCCCCCcEEEEeeeeEEeccC
Q 015422 261 PPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLG-YCAQGDRTKNVGVVDSEYIVHLGL 325 (407)
Q Consensus 261 ppcTgFVEiMAPVFSR~AwrCvw~miqNDLvhGWGLD~~w~-~caqg~~~~kiGVVDa~~VvH~gi 325 (407)
....++ | +|+|++|+.+ .. ++. ....|-|+.+. ++.+ .+.++..+....+.|...
T Consensus 155 ~~~~~~---~--~~~~~~~~~~-g~-~~~-~~~~~eD~~l~~r~~~--~G~~~~~~~~~~~~~~~~ 210 (249)
T cd02525 155 VDTVHH---G--AYRREVFEKV-GG-FDE-SLVRNEDAELNYRLRK--AGYKIWLSPDIRVYYYPR 210 (249)
T ss_pred cccccc---c--eEEHHHHHHh-CC-CCc-ccCccchhHHHHHHHH--cCcEEEEcCCeEEEEcCC
Confidence 001111 1 5789999876 22 222 23346777775 3443 357899999888888763
No 8
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=87.70 E-value=0.65 Score=41.29 Aligned_cols=92 Identities=17% Similarity=0.146 Sum_probs=54.2
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCCCCCCCcccccccccccCcccceeeecccCCCCCCCCCCCCC
Q 015422 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAPP 262 (407)
Q Consensus 183 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~~vHr~~~~~~~~~~C~~~~~~pp 262 (407)
+.+|||++.|.|..++...+.++++... +|..+--.+. |
T Consensus 85 a~~d~i~~~D~D~~~~~~~l~~l~~~~~-------~~~~~~v~~~--------------------------~-------- 123 (196)
T cd02520 85 ARYDILVISDSDISVPPDYLRRMVAPLM-------DPGVGLVTCL--------------------------C-------- 123 (196)
T ss_pred CCCCEEEEECCCceEChhHHHHHHHHhh-------CCCCCeEEee--------------------------c--------
Confidence 6799999999998887766666665432 2322211110 0
Q ss_pred ccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEec
Q 015422 263 CIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHL 323 (407)
Q Consensus 263 cTgFVEiMAPVFSR~AwrCvw~miqNDLvhGWGLD~~w~~caqg~~~~kiGVVDa~~VvH~ 323 (407)
++ ..+=+|+|++++.+=. +.....-.+=|+.+...+. ..+.+|..++.. ++|.
T Consensus 124 ~~----g~~~~~r~~~~~~~gg--f~~~~~~~~eD~~l~~rl~-~~G~~i~~~~~~-~~~~ 176 (196)
T cd02520 124 AF----GKSMALRREVLDAIGG--FEAFADYLAEDYFLGKLIW-RLGYRVVLSPYV-VMQP 176 (196)
T ss_pred cc----CceeeeEHHHHHhccC--hHHHhHHHHHHHHHHHHHH-HcCCeEEEcchh-eecc
Confidence 01 1234788999987621 1221223467888876554 246789888775 4444
No 9
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=85.76 E-value=1.1 Score=39.99 Aligned_cols=128 Identities=17% Similarity=0.111 Sum_probs=63.8
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCCCCCCCcccccccccccCc--ccceeeecccCCCCCCCCCCC
Q 015422 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNS--KAHRRMYKYKGSGRCDDYSTA 260 (407)
Q Consensus 183 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~--~vHr~~~~~~~~~~C~~~~~~ 260 (407)
..+|||++.|+|..++...+.++++.+...+..+.|+........ ..++.-.... .-|...+ . .......
T Consensus 85 ~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~--~~~~~~~ 156 (228)
T PF13641_consen 85 ARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDR--NWLTRLQDLFFARWHLRFR----S--GRRALGV 156 (228)
T ss_dssp ---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCC--CEEEE-TT--S-EETTTS-----T--T-B----
T ss_pred cCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCC--CHHHHHHHHHHhhhhhhhh----h--hhcccce
Confidence 459999999999999999999999999778888888665332211 1111111000 0000000 0 0000011
Q ss_pred CCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEeccCCC
Q 015422 261 PPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPT 327 (407)
Q Consensus 261 ppcTgFVEiMAPVFSR~AwrCvw~miqNDLvhGWGLD~~w~~caqg~~~~kiGVVDa~~VvH~gipt 327 (407)
+.++| -+=+|+|++++-+-. ++. ..-|=|+.+...+.. .+.+|.......|.|...++
T Consensus 157 ~~~~G----~~~~~rr~~~~~~g~--fd~--~~~~eD~~l~~r~~~-~G~~~~~~~~~~v~~~~~~~ 214 (228)
T PF13641_consen 157 AFLSG----SGMLFRRSALEEVGG--FDP--FILGEDFDLCLRLRA-AGWRIVYAPDALVYHEEPSS 214 (228)
T ss_dssp S-B------TEEEEEHHHHHHH-S----S--SSSSHHHHHHHHHHH-TT--EEEEEEEEEEE--SSS
T ss_pred eeccC----cEEEEEHHHHHHhCC--CCC--CCcccHHHHHHHHHH-CCCcEEEECCcEEEEeCCCC
Confidence 12222 123689999988732 344 445588888654432 46799999988888886544
No 10
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=83.57 E-value=0.86 Score=40.55 Aligned_cols=129 Identities=13% Similarity=0.001 Sum_probs=72.3
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHH-hCCcccCCCCC--CCCCccccccccccc--CcccceeeecccCCCCCCCC
Q 015422 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKD-EGLEISQPALD--PVKSEVHHPITARRR--NSKAHRRMYKYKGSGRCDDY 257 (407)
Q Consensus 183 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~-~gLeISQPALd--~~s~~i~h~iT~R~~--~~~vHr~~~~~~~~~~C~~~ 257 (407)
+.+|||++.|+|..++.-.+.++++.+.+ .++.+.++... .... .. .+..... ...+.+... .+...+
T Consensus 83 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~--~~~~~~--- 155 (234)
T cd06421 83 TTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDP-FD-WLADGAPNEQELFYGVIQ--PGRDRW--- 155 (234)
T ss_pred CCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCc-ch-hHHHHHHHHHHHHHHHHH--HHHhhc---
Confidence 48999999999999999999999999987 77777776521 1111 10 0111000 000000000 000000
Q ss_pred CCCCCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEeccCCCC
Q 015422 258 STAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPTL 328 (407)
Q Consensus 258 ~~~ppcTgFVEiMAPVFSR~AwrCvw~miqNDLvhGWGLD~~w~~caqg~~~~kiGVVDa~~VvH~giptL 328 (407)
++. ++=.+.=+|+|++++.+-. + ++ ...+-|+.+..-+. ..+.+|..++...+.|...+++
T Consensus 156 ----~~~-~~~g~~~~~r~~~~~~ig~-~-~~--~~~~eD~~l~~r~~-~~g~~i~~~~~~~~~~~~~~~~ 216 (234)
T cd06421 156 ----GAA-FCCGSGAVVRREALDEIGG-F-PT--DSVTEDLATSLRLH-AKGWRSVYVPEPLAAGLAPETL 216 (234)
T ss_pred ----CCc-eecCceeeEeHHHHHHhCC-C-Cc--cceeccHHHHHHHH-HcCceEEEecCccccccCCccH
Confidence 111 2223445789999998733 2 22 34578988874332 2356888888877776654443
No 11
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=79.15 E-value=1.5 Score=38.34 Aligned_cols=119 Identities=12% Similarity=0.049 Sum_probs=63.4
Q ss_pred hccccEEEEecccccCCCCChHHHHHHHHHh-CCcccCCCCCCC--CCcccccccccccCcccceeeecccCCCCCCCCC
Q 015422 182 VAEYNYIFLWDEDIGVENFNPRRYLSIVKDE-GLEISQPALDPV--KSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYS 258 (407)
Q Consensus 182 v~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~-gLeISQPALd~~--s~~i~h~iT~R~~~~~vHr~~~~~~~~~~C~~~~ 258 (407)
.+.+|||++.|+|..++.-.+++.++.+.++ +..+..+....- .+..++... .+.. .+..+.. ....|.
T Consensus 78 ~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~-~~~~~~--- 149 (201)
T cd04195 78 HCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIGKRR--LPTS--HDDILKF-ARRRSP--- 149 (201)
T ss_pred hcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeecccc--CCCC--HHHHHHH-hccCCC---
Confidence 3579999999999999888888888887653 566665543211 111111111 0100 0000000 001111
Q ss_pred CCCCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEE
Q 015422 259 TAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIV 321 (407)
Q Consensus 259 ~~ppcTgFVEiMAPVFSR~AwrCvw~miqNDLvhGWGLD~~w~~caqg~~~~kiGVVDa~~Vv 321 (407)
+..++=+|.|++++.+-. +... -++-|+.+...+- ..+.++..+....+.
T Consensus 150 --------~~~~~~~~rr~~~~~~g~--~~~~--~~~eD~~~~~r~~-~~g~~~~~~~~~~~~ 199 (201)
T cd04195 150 --------FNHPTVMFRKSKVLAVGG--YQDL--PLVEDYALWARML-ANGARFANLPEILVK 199 (201)
T ss_pred --------CCChHHhhhHHHHHHcCC--cCCC--CCchHHHHHHHHH-HcCCceecccHHHhh
Confidence 111123689999987733 2232 5677888765442 235678777655443
No 12
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=77.53 E-value=11 Score=36.65 Aligned_cols=139 Identities=15% Similarity=0.036 Sum_probs=84.7
Q ss_pred ccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCCCCCCCcccccccccccCcccceeeecccCCCCCCCC----CCC
Q 015422 185 YNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDY----STA 260 (407)
Q Consensus 185 YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~~vHr~~~~~~~~~~C~~~----~~~ 260 (407)
|+|++++++|..++...++++++.+++.+-...=+++-.+... .-.+..+.......... .....+... ..-
T Consensus 85 ~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 160 (305)
T COG1216 85 DDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDE-SLYIDRRGGESDGLTGG---WRASPLLEIAPDLSSY 160 (305)
T ss_pred CcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCC-Ccchheecccccccccc---ceecccccccccccch
Confidence 5599999999999999999999999999887777765443221 11111111111000000 000011110 111
Q ss_pred CCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEeccCCCCCC
Q 015422 261 PPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPTLGV 330 (407)
Q Consensus 261 ppcTgFVEiMAPVFSR~AwrCvw~miqNDLvhGWGLD~~w~~caqg~~~~kiGVVDa~~VvH~giptLg~ 330 (407)
+.+-+++..-+-+++|++++.+ .. +..--=.+.-|.-|.+-+. ..+.++..+=.-.|.|..--+-+.
T Consensus 161 ~~~~~~~~G~~~li~~~~~~~v-G~-~de~~F~y~eD~D~~~R~~-~~G~~i~~~p~a~i~H~~g~s~~~ 227 (305)
T COG1216 161 LEVVASLSGACLLIRREAFEKV-GG-FDERFFIYYEDVDLCLRAR-KAGYKIYYVPDAIIYHKIGSSKGS 227 (305)
T ss_pred hhhhhhcceeeeEEcHHHHHHh-CC-CCcccceeehHHHHHHHHH-HcCCeEEEeeccEEEEeccCCCCC
Confidence 2233466777788999999988 32 4555566677777765554 235689999999999987444443
No 13
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=76.19 E-value=3.4 Score=36.56 Aligned_cols=36 Identities=17% Similarity=0.144 Sum_probs=26.5
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHHhCCcccC
Q 015422 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQ 218 (407)
Q Consensus 183 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQ 218 (407)
+..|||++.|+|..++.-.+.++++.+.+.+..+..
T Consensus 77 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 112 (224)
T cd06442 77 ARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVI 112 (224)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 456999999999888777777777776555555443
No 14
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=75.33 E-value=2.9 Score=37.86 Aligned_cols=133 Identities=15% Similarity=0.063 Sum_probs=70.0
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCCCCCCCccccccc-ccccCcccceeeecccCCCCCCCCCCCC
Q 015422 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPIT-ARRRNSKAHRRMYKYKGSGRCDDYSTAP 261 (407)
Q Consensus 183 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~h~iT-~R~~~~~vHr~~~~~~~~~~C~~~~~~p 261 (407)
+.+|||++.|.|..++...++++..+....+..+.|+-+......-++ ++ .+.-....|-. .+..++ ..+
T Consensus 86 a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~-----~~~ 156 (232)
T cd06437 86 AKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINANYSL-LTRVQAMSLDYHFT---IEQVAR-----SST 156 (232)
T ss_pred CCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcCCCch-hhHhhhhhHHhhhh---HhHhhH-----hhc
Confidence 589999999999999988888877777666666666643210000000 10 00000000000 000000 000
Q ss_pred CccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEeccCCCCC
Q 015422 262 PCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPTLG 329 (407)
Q Consensus 262 pcTgFVEiMAPVFSR~AwrCvw~miqNDLvhGWGLD~~w~~caqg~~~~kiGVVDa~~VvH~giptLg 329 (407)
.+...+=.++-+|+|++|+.+-. + .+. ..+=|+.+...+. .++.++..++...|.|...+|+-
T Consensus 157 ~~~~~~~g~~~~~rr~~~~~vgg-~-~~~--~~~ED~~l~~rl~-~~G~~~~~~~~~~v~~~~~~~~~ 219 (232)
T cd06437 157 GLFFNFNGTAGVWRKECIEDAGG-W-NHD--TLTEDLDLSYRAQ-LKGWKFVYLDDVVVPAELPASMS 219 (232)
T ss_pred CCeEEeccchhhhhHHHHHHhCC-C-CCC--cchhhHHHHHHHH-HCCCeEEEeccceeeeeCCcCHH
Confidence 01111112223799999988732 2 232 2457887765543 24678999988887777655543
No 15
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=74.50 E-value=5.2 Score=36.96 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=31.4
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHHhCCcccCCC
Q 015422 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPA 220 (407)
Q Consensus 183 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPA 220 (407)
+..|||++.|.|...+...++++++.+.+.+.++....
T Consensus 92 a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 129 (243)
T PLN02726 92 ASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGT 129 (243)
T ss_pred cCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEc
Confidence 57899999999999988889999988877776665443
No 16
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=73.57 E-value=5.6 Score=33.85 Aligned_cols=37 Identities=8% Similarity=-0.049 Sum_probs=27.3
Q ss_pred ccccEEEEecccccCCCCChHHHHHHH-HHhCCcccCC
Q 015422 183 AEYNYIFLWDEDIGVENFNPRRYLSIV-KDEGLEISQP 219 (407)
Q Consensus 183 ~~YdYIflwDdDL~vd~f~i~ry~~Iv-r~~gLeISQP 219 (407)
+..|||++.|+|..++.-.+.+.++.. ...+..+..+
T Consensus 74 a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g 111 (202)
T cd06433 74 ATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYG 111 (202)
T ss_pred cCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEe
Confidence 468999999999999988888888444 3334554443
No 17
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=68.16 E-value=26 Score=31.84 Aligned_cols=177 Identities=18% Similarity=0.213 Sum_probs=93.5
Q ss_pred cccCCCCCCCCCCCCCCCcEEEEEecccc--ccchhhHhhcCCCCCcEEEEEEecCccCcccccccccceeEEeeecccc
Q 015422 92 MRPLWSSPSKLNNQRPPMNLLAIAAGIKQ--KKIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTK 169 (407)
Q Consensus 92 lr~Lwg~~~~~~~~~~~k~Lla~~VG~kq--k~~Vd~~v~kf~~~nF~vmLfhYDg~vd~W~d~ews~~aiHvsa~kQtK 169 (407)
+|.-||++.... ..+.-+.+=+|... ...++..|++-....=||+++-+ +|.+..+. .+.+. ..+
T Consensus 6 IR~TW~~~~~~~---~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~---~D~y~nlt--~K~~~-----~~~ 72 (195)
T PF01762_consen 6 IRETWGNQRNFK---GVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDF---VDSYRNLT--LKTLA-----GLK 72 (195)
T ss_pred HHHHHhcccccC---CCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeec---ccccchhh--HHHHH-----HHH
Confidence 467799876432 24556667778776 44566666553223347877654 44454432 11111 133
Q ss_pred hhhhccccChhhhccccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCCCCCCCcccccccccccCcccc--eeeec
Q 015422 170 WWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAH--RRMYK 247 (407)
Q Consensus 170 wwfakRfLHPdiv~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~~vH--r~~~~ 247 (407)
|- .+.+ ..++||+..|||+-| ++.++++..++.-.+.+.+.+... .....-..|.+.++.+ ...|
T Consensus 73 w~-~~~c------~~~~~v~k~DDD~~v---n~~~l~~~L~~~~~~~~~~~~~g~--~~~~~~~~r~~~~kw~v~~~~y- 139 (195)
T PF01762_consen 73 WA-SKHC------PNAKYVLKVDDDVFV---NPDRLVSFLKSLKQDPSKNSIYGG--CIKNGPPIRDPSSKWYVSEEEY- 139 (195)
T ss_pred HH-HhhC------CchhheeecCcEEEE---ehHHhhhhhhhcccCccccccccc--cccCCccccccccCceeeeeec-
Confidence 33 3321 258999999999988 566777766666333333333321 1222223343333211 1111
Q ss_pred ccCCCCCCCCCCCCCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcC
Q 015422 248 YKGSGRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQG 306 (407)
Q Consensus 248 ~~~~~~C~~~~~~ppcTgFVEiMAPVFSR~AwrCvw~miqNDLvhGWGLD~~w~~caqg 306 (407)
....-|| |....+=++|+++.+.+.... .....-+-=|--+|.|++.
T Consensus 140 --------~~~~yP~---y~~G~~yvls~~~v~~i~~~~-~~~~~~~~eDv~iGi~~~~ 186 (195)
T PF01762_consen 140 --------PDDYYPP---YCSGGGYVLSSDVVKRIYKAS-SHTPFFPLEDVFIGILAEK 186 (195)
T ss_pred --------ccccCCC---cCCCCeEEecHHHHHHHHHHh-hcCCCCCchHHHHHHHHHH
Confidence 0112333 344677789999998875432 2233333445556888863
No 18
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=61.40 E-value=19 Score=31.79 Aligned_cols=41 Identities=10% Similarity=0.101 Sum_probs=32.4
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCCCC
Q 015422 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDP 223 (407)
Q Consensus 183 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd~ 223 (407)
+..|||++.|+|..++...+++++......+..++.+....
T Consensus 71 a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 111 (221)
T cd02522 71 ARGDWLLFLHADTRLPPDWDAAIIETLRADGAVAGAFRLRF 111 (221)
T ss_pred ccCCEEEEEcCCCCCChhHHHHHHHHhhcCCcEEEEEEeee
Confidence 45899999999999998888888777777776666655443
No 19
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=61.28 E-value=6 Score=36.09 Aligned_cols=125 Identities=19% Similarity=0.108 Sum_probs=74.0
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHH--hCCcccCCCCCCCCCcccccccccccCcccceeeecccCCCCCCCCCCC
Q 015422 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKD--EGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTA 260 (407)
Q Consensus 183 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~--~gLeISQPALd~~s~~i~h~iT~R~~~~~vHr~~~~~~~~~~C~~~~~~ 260 (407)
+.||||++-|+|+.++.-.+.+...-... .|+-=+-|-.-+..+- .-.+-.-...+|-.++..
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~~---~~~l~~~~~~~~~~~~~a------------ 94 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARGF---WSRLEAAFFNFLPGVLQA------------ 94 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcCH---HHHHHHHHHhHHHHHHHH------------
Confidence 79999999999999998888887765554 4443223333232221 111111111222222111
Q ss_pred CCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEeccCC
Q 015422 261 PPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLP 326 (407)
Q Consensus 261 ppcTgFVEiMAPVFSR~AwrCvw~miqNDLvhGWGLD~~w~~caqg~~~~kiGVVDa~~VvH~gip 326 (407)
..-+.|+=.|+=.|.|++++.+ . -++.+.+.-.=||.++..+. .++.+|...... |+|+.+|
T Consensus 95 ~~~~~~~~G~~m~~rr~~L~~~-G-G~~~l~~~ladD~~l~~~~~-~~G~~v~~~~~~-v~~~~~~ 156 (175)
T PF13506_consen 95 LGGAPFAWGGSMAFRREALEEI-G-GFEALADYLADDYALGRRLR-ARGYRVVLSPYP-VVQTSVP 156 (175)
T ss_pred hcCCCceecceeeeEHHHHHHc-c-cHHHHhhhhhHHHHHHHHHH-HCCCeEEEcchh-eeecccC
Confidence 0124567778888999999876 2 24556667788999998776 356777666543 4455443
No 20
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=61.23 E-value=4.6 Score=36.17 Aligned_cols=41 Identities=12% Similarity=-0.021 Sum_probs=36.0
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCCCC
Q 015422 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDP 223 (407)
Q Consensus 183 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd~ 223 (407)
+.+|||++.|+|..++...+++.++.+...++.+.++....
T Consensus 76 a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~ 116 (235)
T cd06434 76 VTTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRI 116 (235)
T ss_pred hCCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEe
Confidence 58999999999999999999999999988888888877544
No 21
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=60.10 E-value=6.1 Score=35.23 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=27.5
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHHhCCcccCC
Q 015422 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQP 219 (407)
Q Consensus 183 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQP 219 (407)
+..|||++.|.|...+...+.++++.+...+..+...
T Consensus 81 a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g 117 (211)
T cd04188 81 ARGDYILFADADLATPFEELEKLEEALKTSGYDIAIG 117 (211)
T ss_pred hcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 3569999999998888777888777765555555443
No 22
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=59.20 E-value=7.3 Score=31.69 Aligned_cols=38 Identities=13% Similarity=0.145 Sum_probs=29.9
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHHhCCcccCCC
Q 015422 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPA 220 (407)
Q Consensus 183 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPA 220 (407)
+..|||++.|+|..++.-.++++++.+++.+-.+.-+.
T Consensus 77 a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 114 (169)
T PF00535_consen 77 AKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGS 114 (169)
T ss_dssp --SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEE
T ss_pred cceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEE
Confidence 56779999999999999999999999999776554443
No 23
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=57.20 E-value=22 Score=31.94 Aligned_cols=124 Identities=16% Similarity=0.031 Sum_probs=63.6
Q ss_pred hccccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCCC--CCCCc--cc-ccccccccCcccceeeecccCCCCCCC
Q 015422 182 VAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALD--PVKSE--VH-HPITARRRNSKAHRRMYKYKGSGRCDD 256 (407)
Q Consensus 182 v~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd--~~s~~--i~-h~iT~R~~~~~vHr~~~~~~~~~~C~~ 256 (407)
.+..|||++.|.|..++...+.+.+..+.+....+.-+... +.... +. +..++.. ..+....+ +
T Consensus 82 ~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------~-- 150 (219)
T cd06913 82 QSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGCQVRRIPEDSTERYTRWINTLTR--EQLLTQVY-------T-- 150 (219)
T ss_pred hcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEEEEEecCcccchhhHHHHHhcCH--HHHHHHHH-------h--
Confidence 35799999999999998888888877776654333222211 11000 00 0000000 00000000 0
Q ss_pred CCCCCCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEecc
Q 015422 257 YSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLG 324 (407)
Q Consensus 257 ~~~~ppcTgFVEiMAPVFSR~AwrCvw~miqNDLvhGWGLD~~w~~caqg~~~~kiGVVDa~~VvH~g 324 (407)
+++| ++ -+-.-+++|++|+.+ .. +++..-+.+=|+-+.+.+. ..+.+|.-+|...+.++.
T Consensus 151 -~~~~-~~---~~~~~~~rr~~~~~~-g~-f~~~~~~~~eD~~l~~r~~-~~g~~i~~~~~~~~~yr~ 210 (219)
T cd06913 151 -SHGP-TV---IMPTWFCSREWFSHV-GP-FDEGGKGVPEDLLFFYEHL-RKGGGVYRVDRCLLLYRY 210 (219)
T ss_pred -hcCC-cc---ccccceeehhHHhhc-CC-ccchhccchhHHHHHHHHH-HcCCceEEEcceeeeeee
Confidence 1111 11 111124789999877 33 3443335567888765432 235789999886665554
No 24
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=56.91 E-value=7.6 Score=35.31 Aligned_cols=40 Identities=13% Similarity=0.032 Sum_probs=32.1
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCCC
Q 015422 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALD 222 (407)
Q Consensus 183 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd 222 (407)
+..|||++.|+|..++...+.++++.++..+..+.++...
T Consensus 108 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~ 147 (251)
T cd06439 108 ATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELV 147 (251)
T ss_pred cCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEE
Confidence 3569999999999999888888888887666777666543
No 25
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=51.93 E-value=15 Score=31.77 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=25.1
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHHhCCccc
Q 015422 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEIS 217 (407)
Q Consensus 183 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeIS 217 (407)
+..|||++.|+|...+.-.+.++++.+ +.+.++.
T Consensus 79 a~~d~i~~~D~D~~~~~~~l~~l~~~~-~~~~~~v 112 (181)
T cd04187 79 ARGDAVITMDADLQDPPELIPEMLAKW-EEGYDVV 112 (181)
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHH-hCCCcEE
Confidence 345999999999998877778888763 3454443
No 26
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=50.59 E-value=9.2 Score=34.45 Aligned_cols=123 Identities=15% Similarity=0.039 Sum_probs=64.0
Q ss_pred cccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCCCCCCCcccccccccccCcccceeeecccCCCCCCCCCCCCCc
Q 015422 184 EYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAPPC 263 (407)
Q Consensus 184 ~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~~vHr~~~~~~~~~~C~~~~~~ppc 263 (407)
.||||++.|+|..++.-.+.++++.++..+..+.++...-..+. ..+..... .... ...+..... +.. ...+
T Consensus 84 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~-~~~~-~~~~~~~~~--~~~---~~~~ 155 (236)
T cd06435 84 DAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAPQDYRDGE-ESLFKRMC-YAEY-KGFFDIGMV--SRN---ERNA 155 (236)
T ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecCccccCCC-ccHHHHHH-hHHH-HHHHHHHhc--ccc---ccCc
Confidence 49999999999999998889998888766777766542211110 01111000 0000 000000000 000 0011
Q ss_pred cceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeE
Q 015422 264 IGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYI 320 (407)
Q Consensus 264 TgFVEiMAPVFSR~AwrCvw~miqNDLvhGWGLD~~w~~caqg~~~~kiGVVDa~~V 320 (407)
.++-..+-+|+|++++.+ .. +++... +=|+.+..-+. ..+.++..++...+
T Consensus 156 -~~~~g~~~~~rr~~~~~i-Gg-f~~~~~--~eD~dl~~r~~-~~G~~~~~~~~~~~ 206 (236)
T cd06435 156 -IIQHGTMCLIRRSALDDV-GG-WDEWCI--TEDSELGLRMH-EAGYIGVYVAQSYG 206 (236)
T ss_pred -eEEecceEEEEHHHHHHh-CC-CCCccc--cchHHHHHHHH-HCCcEEEEcchhhc
Confidence 122233347999999987 33 233222 45888765543 24578888776433
No 27
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=50.57 E-value=17 Score=31.97 Aligned_cols=125 Identities=18% Similarity=0.136 Sum_probs=67.9
Q ss_pred EEEEecccccCCCCChHHHHHHHHHhCCcccCCCCCCCCCcccccccccccCccc--ceeee-cccCCCCCCCCCCCCCc
Q 015422 187 YIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKA--HRRMY-KYKGSGRCDDYSTAPPC 263 (407)
Q Consensus 187 YIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~~v--Hr~~~-~~~~~~~C~~~~~~ppc 263 (407)
||.+.|+|-.++.....+..+.++.-+..+.|+...... ....+|.-...... |.... .....+.|.
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 70 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFRN--RGSLLTRLQDFEYAISHGLSRLSQSSLGRPL-------- 70 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEecC--CCChhheeehhhhhhhhhhhHHHHHhcCCCc--------
Confidence 789999999999988888888888558888888876532 11112221111100 00000 000111111
Q ss_pred cceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEeccCCC
Q 015422 264 IGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPT 327 (407)
Q Consensus 264 TgFVEiMAPVFSR~AwrCvw~miqNDLvhGWGLD~~w~~caqg~~~~kiGVVDa~~VvH~gipt 327 (407)
++=.-.=+|++++++.+ .. .+ ..--.|=|+.++.-+. ..+.+++.++...+.|...+|
T Consensus 71 --~~~G~~~~~r~~~l~~v-g~-~~-~~~~~~ED~~l~~~l~-~~G~~~~~~~~~~~~~~~p~t 128 (193)
T PF13632_consen 71 --FLSGSGMLFRREALREV-GG-FD-DPFSIGEDMDLGFRLR-RAGYRIVYVPDAIVYTEAPPT 128 (193)
T ss_pred --cccCcceeeeHHHHHHh-Cc-cc-ccccccchHHHHHHHH-HCCCEEEEecccceeeeCCCC
Confidence 11133457889999876 11 22 1123335666653222 235799999988554444333
No 28
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=48.87 E-value=29 Score=34.78 Aligned_cols=192 Identities=17% Similarity=0.169 Sum_probs=94.4
Q ss_pred CCCcEEEEEeccccccchhhHhhcC-----------CCCCcEEEEEEecCccCcccc--cccccc------eeEEee--e
Q 015422 107 PPMNLLAIAAGIKQKKIVDQIVRKF-----------PSKDFVVMLFHYDGVVDEWKD--LVWADR------AIHVSA--A 165 (407)
Q Consensus 107 ~~k~Lla~~VG~kqk~~Vd~~v~kf-----------~~~nF~vmLfhYDg~vd~W~d--~ews~~------aiHvsa--~ 165 (407)
.+.--|++|+ ++...++..+++.- +..++.|++. -||+.|+=.+ -++.+. .+++.. .
T Consensus 69 ~~~isVVIP~-yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVV-DDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~ 146 (333)
T PTZ00260 69 DVDLSIVIPA-YNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIV-NDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLR 146 (333)
T ss_pred CeEEEEEEee-CCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEE-eCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCC
Confidence 3445666775 44445565555432 1225665554 6888775222 112111 144432 3
Q ss_pred cccchhhhccccChhhhccccEEEEecccccCCCCChHHHHHHHHH---hCCcccCCCCCCC-CC-ccccccccccc-Cc
Q 015422 166 NQTKWWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKD---EGLEISQPALDPV-KS-EVHHPITARRR-NS 239 (407)
Q Consensus 166 kQtKwwfakRfLHPdiv~~YdYIflwDdDL~vd~f~i~ry~~Ivr~---~gLeISQPALd~~-s~-~i~h~iT~R~~-~~ 239 (407)
|+.|-.=.+.=+ -.+..|||++.|.|...+..++.++++.+++ .+.++..-+.... .+ ....+--.|+- ..
T Consensus 147 N~G~~~A~~~Gi---~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~~~~~~~~~r~~~~~ 223 (333)
T PTZ00260 147 NKGKGGAVRIGM---LASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSDVVAKRKWYRNILMY 223 (333)
T ss_pred CCChHHHHHHHH---HHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCcccccCcHHHHHHHH
Confidence 455533111111 1357899999999999999999999998875 4555444332211 11 01111111111 11
Q ss_pred ccceeeecccCCCCCCCCCCCCCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeee
Q 015422 240 KAHRRMYKYKGSGRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSE 318 (407)
Q Consensus 240 ~vHr~~~~~~~~~~C~~~~~~ppcTgFVEiMAPVFSR~AwrCvw~miqNDLvhGWGLD~~w~~caqg~~~~kiGVVDa~ 318 (407)
.+|... +.-.+..-.| ..+||- +|+|++++-+.. +-...+|+.|..+-..+.. .+.+|+-|--.
T Consensus 224 ~~~~l~-~~~~~~~i~D-----~~~Gfk-----~~~r~~~~~i~~---~~~~~~~~fd~Ell~~a~~-~g~~I~EvPv~ 287 (333)
T PTZ00260 224 GFHFIV-NTICGTNLKD-----TQCGFK-----LFTRETARIIFP---SLHLERWAFDIEIVMIAQK-LNLPIAEVPVN 287 (333)
T ss_pred HHHHHH-HHHcCCCccc-----CCCCeE-----EEeHHHHHHHhh---hccccCccchHHHHHHHHH-cCCCEEEEcee
Confidence 112110 0000000011 122333 789999987631 2234688888888777652 33445544433
No 29
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=48.75 E-value=16 Score=35.45 Aligned_cols=126 Identities=21% Similarity=0.228 Sum_probs=55.3
Q ss_pred hccccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCCCCCCCcccccccccccCcccceeeecccCCCCCCCCCCCC
Q 015422 182 VAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAP 261 (407)
Q Consensus 182 v~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~~vHr~~~~~~~~~~C~~~~~~p 261 (407)
-..+|++++.|||.-| ++++++++...++ -+||-.=...+ ..++++.-.+.. .+ + ..+
T Consensus 84 ~~~~~Wf~~~DDDtyv---~~~~L~~~L~~~~--~~~~~yiG~~~-~~~~~~~~~~~~-~~------~---------~~~ 141 (252)
T PF02434_consen 84 NSDKDWFCFADDDTYV---NVENLRRLLSKYD--PSEPIYIGRPS-GDRPIEIIHRFN-PN------K---------SKD 141 (252)
T ss_dssp HHT-SEEEEEETTEEE----HHHHHHHHTTS---TTS--EEE-EE-----------------------------------
T ss_pred cCCceEEEEEeCCcee---cHHHHHHHHhhCC--CccCEEeeeec-cCccceeecccc-cc------c---------cCc
Confidence 3578999999999987 7777777777654 23443211111 122222211000 00 0 000
Q ss_pred CccceEEe-ecccccHHHHHHH--hh----hhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEeccCCCCCCCC
Q 015422 262 PCIGWVEM-MAPVFSRAAWRCA--WY----MIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPTLGVTT 332 (407)
Q Consensus 262 pcTgFVEi-MAPVFSR~AwrCv--w~----miqNDLvhGWGLD~~w~~caqg~~~~kiGVVDa~~VvH~giptLg~~~ 332 (407)
.+-.|.-+ -.=|+||.+.+.+ |. .++.+....+.=|..+|+|++. --+|-.+++ .-.|.-.|.|....
T Consensus 142 ~~~~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~--~lgv~lt~s-~~fhs~~~~l~~~~ 216 (252)
T PF02434_consen 142 SGFWFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIEN--LLGVPLTHS-PLFHSHLENLQDYN 216 (252)
T ss_dssp ----EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHH--TT---EEE--TT---SSS-GGG--
T ss_pred CceEeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHh--cCCcceeec-hhhcccCcccccCC
Confidence 01112222 2246899998776 32 2334444467889999999973 235555665 55788888876543
No 30
>PF12621 DUF3779: Phosphate metabolism protein ; InterPro: IPR022257 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02714 from PFAM. There are two completely conserved residues (W and D) that may be functionally important. This family is likely to be involved in phosphate metabolism however there is little accompanying literature to confirm this.
Probab=45.06 E-value=19 Score=30.44 Aligned_cols=52 Identities=25% Similarity=0.455 Sum_probs=38.9
Q ss_pred ccccChhhhccccEEEEecccccCCCCChHHHHHHHHHhCCcccCCC--CCCCCCcccc
Q 015422 174 KRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPA--LDPVKSEVHH 230 (407)
Q Consensus 174 kRfLHPdiv~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPA--Ld~~s~~i~h 230 (407)
.-|+||.+.++--.|||+-|++||.... ++-.++.|+.||.-+ |+. +|++.|
T Consensus 34 ~ay~~Pa~~~~~P~lWIP~D~~GvS~~e----i~~~~~~~v~~Sd~gA~lde-kgkv~~ 87 (95)
T PF12621_consen 34 HAYLHPAVSAPQPILWIPRDPLGVSRQE----IEETRKVGVPISDEGATLDE-KGKVVW 87 (95)
T ss_pred hccCCHhHcCCCCeEEeecCCCCCCHHH----HHHhhcCCeEEECCCeEEcc-CCCEEE
Confidence 3499999999999999999999997644 455677778888655 444 344444
No 31
>PRK11204 N-glycosyltransferase; Provisional
Probab=44.47 E-value=33 Score=34.46 Aligned_cols=201 Identities=15% Similarity=0.093 Sum_probs=94.2
Q ss_pred CCCcEEEEEeccccccchhhHhhcCC---CCCcEEEEEEecCccCccccc--ccccc--eeEEee--ecccchhhhcccc
Q 015422 107 PPMNLLAIAAGIKQKKIVDQIVRKFP---SKDFVVMLFHYDGVVDEWKDL--VWADR--AIHVSA--ANQTKWWFAKRFL 177 (407)
Q Consensus 107 ~~k~Lla~~VG~kqk~~Vd~~v~kf~---~~nF~vmLfhYDg~vd~W~d~--ews~~--aiHvsa--~kQtKwwfakRfL 177 (407)
.++.-+.+|+=.. .+.+.+.++... -.+++|++.. ||..|+=.+. ++..+ -+++.. .+..|=.=.+
T Consensus 53 ~p~vsViIp~yne-~~~i~~~l~sl~~q~yp~~eiiVvd-D~s~d~t~~~l~~~~~~~~~v~~i~~~~n~Gka~aln--- 127 (420)
T PRK11204 53 YPGVSILVPCYNE-GENVEETISHLLALRYPNYEVIAIN-DGSSDNTGEILDRLAAQIPRLRVIHLAENQGKANALN--- 127 (420)
T ss_pred CCCEEEEEecCCC-HHHHHHHHHHHHhCCCCCeEEEEEE-CCCCccHHHHHHHHHHhCCcEEEEEcCCCCCHHHHHH---
Confidence 3456677776444 344544443221 2367877764 5555542221 11111 122222 2333311111
Q ss_pred ChhhhccccEEEEecccccCCCCChHHHHHHHH-HhCCcccC--CCCCCCCCcccccccccccCc-ccceeeecccCCCC
Q 015422 178 HPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVK-DEGLEISQ--PALDPVKSEVHHPITARRRNS-KAHRRMYKYKGSGR 253 (407)
Q Consensus 178 HPdiv~~YdYIflwDdDL~vd~f~i~ry~~Ivr-~~gLeISQ--PALd~~s~~i~h~iT~R~~~~-~vHr~~~~~~~~~~ 253 (407)
.-=-.+.||||++.|.|..++...++++++.++ ..+..+.| |......+-+.+..+..-... ...++.. +..+
T Consensus 128 ~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~- 204 (420)
T PRK11204 128 TGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRIRNRSTLLGRIQVGEFSSIIGLIKRAQ--RVYG- 204 (420)
T ss_pred HHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCceeccchhHHHHHHHHHHHHhhhHHHHHH--HHhC-
Confidence 111126899999999999999888888888874 33444444 222211110111000000000 0000000 0000
Q ss_pred CCCCCCCCCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEeccCCCCC
Q 015422 254 CDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPTLG 329 (407)
Q Consensus 254 C~~~~~~ppcTgFVEiMAPVFSR~AwrCvw~miqNDLvhGWGLD~~w~~caqg~~~~kiGVVDa~~VvH~giptLg 329 (407)
....+-.++=+|+|++++.+ .....+.. +=|+.+..-+. ..+.++..+....+.|....|+.
T Consensus 205 ---------~~~~~~G~~~~~rr~~l~~v-gg~~~~~~---~ED~~l~~rl~-~~G~~i~~~p~~~~~~~~p~t~~ 266 (420)
T PRK11204 205 ---------RVFTVSGVITAFRKSALHEV-GYWSTDMI---TEDIDISWKLQ-LRGWDIRYEPRALCWILMPETLK 266 (420)
T ss_pred ---------CceEecceeeeeeHHHHHHh-CCCCCCcc---cchHHHHHHHH-HcCCeEEeccccEEEeECcccHH
Confidence 00112234457899999876 22222222 35776655443 24568888887777776655554
No 32
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=38.87 E-value=33 Score=33.68 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=19.5
Q ss_pred CcchhhhhHHHHHHHHHHhhcccceech
Q 015422 17 RSCLCSLFIAAALICSVYFIGSSFVAKE 44 (407)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~fi~~~~~~~~ 44 (407)
-+++..+|++++|.+++|||++++.-..
T Consensus 200 ~g~f~wl~i~~~l~~~~Y~i~g~~~n~~ 227 (268)
T PF09451_consen 200 WGFFTWLFIILFLFLAAYLIFGSWYNYN 227 (268)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhheeec
Confidence 3344567777777778999988876543
No 33
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=37.42 E-value=28 Score=27.30 Aligned_cols=22 Identities=23% Similarity=0.099 Sum_probs=19.1
Q ss_pred cccEEEEecccccCCCCChHHH
Q 015422 184 EYNYIFLWDEDIGVENFNPRRY 205 (407)
Q Consensus 184 ~YdYIflwDdDL~vd~f~i~ry 205 (407)
.+||+++.|+|..++...+.++
T Consensus 77 ~~d~v~~~d~D~~~~~~~~~~~ 98 (156)
T cd00761 77 RGEYILFLDADDLLLPDWLERL 98 (156)
T ss_pred cCCEEEEECCCCccCccHHHHH
Confidence 7999999999999887777766
No 34
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=35.80 E-value=40 Score=30.92 Aligned_cols=71 Identities=18% Similarity=0.225 Sum_probs=36.5
Q ss_pred CCCCCCceecCCCCccccCCCCCCCCCCCCCCC-cEEEEEeccccccc----hh----------hHhhcCCC------CC
Q 015422 77 EALPEGIVSKTSNLEMRPLWSSPSKLNNQRPPM-NLLAIAAGIKQKKI----VD----------QIVRKFPS------KD 135 (407)
Q Consensus 77 e~LP~GIv~~~sd~~lr~Lwg~~~~~~~~~~~k-~Lla~~VG~kqk~~----Vd----------~~v~kf~~------~n 135 (407)
++||+.-|++-+|-...+| .+..+...+ .|++++ |.-.+.. ++ .++++|.. .-
T Consensus 34 ~Rlp~~~v~r~aD~~p~~l-----~~~l~sdGrfri~vFa-gd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~s~ 107 (169)
T PF07976_consen 34 RRLPSAKVVRHADGNPVHL-----QDDLPSDGRFRILVFA-GDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPDSV 107 (169)
T ss_dssp CB----EEEETTTTEEEEG-----GGG--SSS-EEEEEEE-ETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TTSS
T ss_pred cccCCceEEEEcCCCChhH-----hhhcccCCCEEEEEEe-CCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCCCe
Confidence 4799999999999655555 222233334 555555 4433322 22 34556643 33
Q ss_pred cEEEEEEecCccCccccccccc
Q 015422 136 FVVMLFHYDGVVDEWKDLVWAD 157 (407)
Q Consensus 136 F~vmLfhYDg~vd~W~d~ews~ 157 (407)
||++|+| -..++++||.+
T Consensus 108 ~~~~~I~----~~~~~~~e~~d 125 (169)
T PF07976_consen 108 FDVLLIH----SSPRDEVELFD 125 (169)
T ss_dssp EEEEEEE----SS-CCCS-GGG
T ss_pred eEEEEEe----cCCCCceeHHH
Confidence 9999999 34567777754
No 35
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=35.57 E-value=23 Score=28.55 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=26.3
Q ss_pred cccEEEEecccccCCCCChHHH-HHHHHHhCCcccCCCC
Q 015422 184 EYNYIFLWDEDIGVENFNPRRY-LSIVKDEGLEISQPAL 221 (407)
Q Consensus 184 ~YdYIflwDdDL~vd~f~i~ry-~~Ivr~~gLeISQPAL 221 (407)
.+|||++.|+|..++...+.++ ..+.+..+..+..+..
T Consensus 78 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~ 116 (180)
T cd06423 78 KGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRV 116 (180)
T ss_pred CCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeE
Confidence 7999999999998887777777 3334444444444443
No 36
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=34.76 E-value=31 Score=29.99 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=29.6
Q ss_pred ccccEEEEecccccCCCCChHHHHHHH-HHhCCcccCC
Q 015422 183 AEYNYIFLWDEDIGVENFNPRRYLSIV-KDEGLEISQP 219 (407)
Q Consensus 183 ~~YdYIflwDdDL~vd~f~i~ry~~Iv-r~~gLeISQP 219 (407)
+.+|||++.|+|-.++...++++++.+ +..+..+..+
T Consensus 82 a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~ 119 (202)
T cd04184 82 ATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYS 119 (202)
T ss_pred hcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEc
Confidence 578999999999999888888888887 5555655544
No 37
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=34.69 E-value=68 Score=30.96 Aligned_cols=203 Identities=13% Similarity=0.150 Sum_probs=92.1
Q ss_pred EEEEecccccc-----chhhHh---hcC-CCCCcEEEEEEecCccCccc-cc-ccccceeEE-eeecc--cc-hhhhccc
Q 015422 112 LAIAAGIKQKK-----IVDQIV---RKF-PSKDFVVMLFHYDGVVDEWK-DL-VWADRAIHV-SAANQ--TK-WWFAKRF 176 (407)
Q Consensus 112 la~~VG~kqk~-----~Vd~~v---~kf-~~~nF~vmLfhYDg~vd~W~-d~-ews~~aiHv-sa~kQ--tK-wwfakRf 176 (407)
+++||..+... .+..++ +++ +..++.|++..++.. +++. .+ +..+...++ ..... .+ |-.++-.
T Consensus 2 iIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~~~~eiIvvd~~s~-~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~ar 80 (281)
T PF10111_consen 2 IIIPVRNRSERPDILERLRNCLESLSQFQSDPDFEIIVVDDGSS-DEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAKAR 80 (281)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCc-hhHHHHHHHHHhccCceEEEEcCCCCCCcCHHHHH
Confidence 67899888742 332223 332 346888888887664 4441 11 111111111 11111 11 2222110
Q ss_pred cChhhhccccEEEEecccccCCCCChHHHHH----HHHHhCCcccCCCCCCCCCcccccccccccCcccceeeecccCCC
Q 015422 177 LHPDIVAEYNYIFLWDEDIGVENFNPRRYLS----IVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSG 252 (407)
Q Consensus 177 LHPdiv~~YdYIflwDdDL~vd~f~i~ry~~----Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~~vHr~~~~~~~~~ 252 (407)
---=-.+.-|||+++|-|+-++...+++++. +.+...--+.=|.+.-+. ..+-.+..... ...+......
T Consensus 81 N~g~~~A~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~~~~~~p~~yl~~-~~~~~~~~~~~-~~~~~~~~~~---- 154 (281)
T PF10111_consen 81 NIGAKYARGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPNAFLVYPCLYLSE-EGSEKFYSQFK-NLWDHEFLES---- 154 (281)
T ss_pred HHHHHHcCCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCCceEEEeeeeccc-hhhHHHhhcch-hcchHHHHHH----
Confidence 0011237899999999999999888888888 222211112223221111 01111111110 0000000000
Q ss_pred CCCCCCCCCCccceEEeecccccHHHHHHHhhhhcCCCcccchh-hhhhhhhhcCCCCCcEEEEeeeeEEeccC
Q 015422 253 RCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGL-DIQLGYCAQGDRTKNVGVVDSEYIVHLGL 325 (407)
Q Consensus 253 ~C~~~~~~ppcTgFVEiMAPVFSR~AwrCvw~miqNDLvhGWGL-D~~w~~caqg~~~~kiGVVDa~~VvH~gi 325 (407)
-+....+......++- -+=+++|+.+..+ .- +|+.-.|||. |+-+.+-+.. .+.++...+...+.|..-
T Consensus 155 ~~~~~~~~~~~~~~~s-~~~~i~r~~f~~i-GG-fDE~f~G~G~ED~D~~~RL~~-~~~~~~~~~~~~~~~~~~ 224 (281)
T PF10111_consen 155 FISGKNSLWEFIAFAS-SCFLINREDFLEI-GG-FDERFRGWGYEDIDFGYRLKK-AGYKFKRSPDYLVYHSHR 224 (281)
T ss_pred Hhhccccccccccccc-eEEEEEHHHHHHh-CC-CCccccCCCcchHHHHHHHHH-cCCcEecChHHhcccccC
Confidence 0000000000111111 2336789999888 33 6888899984 4444433321 245666677777766543
No 38
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=31.93 E-value=36 Score=29.96 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=29.2
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHHhCCcccCCC
Q 015422 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPA 220 (407)
Q Consensus 183 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPA 220 (407)
+.+|||++.|+|..++.--++++++.+.+.+-...+.+
T Consensus 81 ~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~ 118 (229)
T cd04192 81 AKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGP 118 (229)
T ss_pred hcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeee
Confidence 57999999999999988888888886666554444433
No 39
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=31.88 E-value=66 Score=31.33 Aligned_cols=95 Identities=12% Similarity=0.212 Sum_probs=52.0
Q ss_pred ccccccchhhHhhcCCC-CCcEEEEEEecCccCcccccccccceeEEeeecccchhhhccccChhhhccccEEEEecccc
Q 015422 117 GIKQKKIVDQIVRKFPS-KDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIFLWDEDI 195 (407)
Q Consensus 117 G~kqk~~Vd~~v~kf~~-~nF~vmLfhYDg~vd~W~d~ews~~aiHvsa~kQtKwwfakRfLHPdiv~~YdYIflwDdDL 195 (407)
..+......++|+.... ..-.=+++...+...--...+|....+-|-...+++=-+-.||+..+ .-+=|.||..|||+
T Consensus 8 ~~~R~~~L~~~l~~l~~~~~l~~IvVvWn~~~~~P~~~~~~~~~vpV~~~~~~~nsLnnRF~p~~-~i~T~AVl~~DDDv 86 (247)
T PF09258_consen 8 SYKRSDLLKRLLRHLASSPSLRKIVVVWNNPNPPPPSSKWPSTGVPVRVVRSSRNSLNNRFLPDP-EIETDAVLSLDDDV 86 (247)
T ss_dssp -SS-HHHHHHHHHHHTTSTTEEEEEEEEE-TS--THHHHHT---S-EEEEEESSHHGGGGGS--T-T--SSEEEEEETTE
T ss_pred cccchHHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcccccCCCCceEEEEecCCccHHhcCcCcc-ccCcceEEEecCCc
Confidence 44444555566665432 23332333333322222235565555666556666666778887543 33579999999999
Q ss_pred cCCCCChHHHHHHHHHh
Q 015422 196 GVENFNPRRYLSIVKDE 212 (407)
Q Consensus 196 ~vd~f~i~ry~~Ivr~~ 212 (407)
.++..+++.=|+.-+++
T Consensus 87 ~~~~~~l~faF~~W~~~ 103 (247)
T PF09258_consen 87 MLSCDELEFAFQVWREF 103 (247)
T ss_dssp EE-HHHHHHHHHHHCCS
T ss_pred ccCHHHHHHHHHHHHhC
Confidence 99999999989888754
No 40
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=30.83 E-value=25 Score=28.35 Aligned_cols=25 Identities=28% Similarity=0.668 Sum_probs=19.2
Q ss_pred hhhhccccEEEEecccccCCCCChHHHHHHHHHhC
Q 015422 179 PDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEG 213 (407)
Q Consensus 179 Pdiv~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~g 213 (407)
..+...|||||++|.+ .++-.|+.|
T Consensus 13 ~~i~~~~~~iFt~D~~----------~~~~~~~~G 37 (79)
T PF12996_consen 13 YSIANSYDYIFTFDRS----------FVEEYRNLG 37 (79)
T ss_pred hhhCCCCCEEEEECHH----------HHHHHHHcC
Confidence 4788899999999875 455566666
No 41
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=30.15 E-value=44 Score=29.03 Aligned_cols=47 Identities=21% Similarity=0.094 Sum_probs=31.6
Q ss_pred cccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEecc
Q 015422 273 VFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLG 324 (407)
Q Consensus 273 VFSR~AwrCvw~miqNDLvhGWGLD~~w~~caqg~~~~kiGVVDa~~VvH~g 324 (407)
+|+|++++.+- . +... ..|+-|+.+..++.. ..++.+++...+.|+.
T Consensus 158 ~~r~~~~~~~~-~-~~~~-~~~~~D~~~~~~~~~--~~~~~~~~~~~~~~r~ 204 (214)
T cd04196 158 AFNRELLELAL-P-FPDA-DVIMHDWWLALLASA--FGKVVFLDEPLILYRQ 204 (214)
T ss_pred eEEHHHHHhhc-c-cccc-ccccchHHHHHHHHH--cCceEEcchhHHHHhc
Confidence 69999998872 2 2222 267778777666542 4579999888776664
No 42
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=30.12 E-value=77 Score=29.59 Aligned_cols=30 Identities=13% Similarity=0.176 Sum_probs=25.6
Q ss_pred hccccEEEEecccccCCCCChHHHHHHHHH
Q 015422 182 VAEYNYIFLWDEDIGVENFNPRRYLSIVKD 211 (407)
Q Consensus 182 v~~YdYIflwDdDL~vd~f~i~ry~~Ivr~ 211 (407)
.+.+|||++.|.|..++.--+.++++.+.+
T Consensus 71 ~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~ 100 (244)
T cd04190 71 PDDPEFILLVDADTKFDPDSIVQLYKAMDK 100 (244)
T ss_pred cCCCCEEEEECCCCcCCHhHHHHHHHHHHh
Confidence 478999999999999988888888877743
No 43
>PF09828 Chrome_Resist: Chromate resistance exported protein; InterPro: IPR018634 Members of this family of bacterial proteins are involved in the reduction of chromate accumulation and are essential for chromate resistance [, ].
Probab=29.10 E-value=37 Score=31.18 Aligned_cols=55 Identities=20% Similarity=0.513 Sum_probs=37.0
Q ss_pred hhhhccccChhhhccccEEEEeccc-------ccCCCCChH-----------HHHHHHHHhCCcccCCCCCCCCCccccc
Q 015422 170 WWFAKRFLHPDIVAEYNYIFLWDED-------IGVENFNPR-----------RYLSIVKDEGLEISQPALDPVKSEVHHP 231 (407)
Q Consensus 170 wwfakRfLHPdiv~~YdYIflwDdD-------L~vd~f~i~-----------ry~~Ivr~~gLeISQPALd~~s~~i~h~ 231 (407)
=|+++||+-|+- +++|+.++. .+--.||+. .|=-++++||| ..|||..= ++|-|.
T Consensus 15 ~WLIrRFIDp~A----~F~fv~~~~v~~~~~~~~A~pFD~~ga~~tH~g~~cTFe~ll~~f~L--~dpaL~~l-a~IV~~ 87 (135)
T PF09828_consen 15 PWLIRRFIDPEA----EFLFVPPPEVLDVACPFDAIPFDIPGAEFTHRGDRCTFEVLLASFGL--DDPALARL-AAIVRG 87 (135)
T ss_pred HHHHHHhcCCCc----eEEEeCchhhccccccCCCCcccCCCCeeeeeCCcccHHHHHHHhCC--CCHHHHHH-HHHHHH
Confidence 489999998853 677887766 122233332 46678899999 89999863 345443
No 44
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=28.15 E-value=54 Score=30.11 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=29.7
Q ss_pred ccccEEEEecccccCCCCChHHHHHHHHHh--CCcccCCC
Q 015422 183 AEYNYIFLWDEDIGVENFNPRRYLSIVKDE--GLEISQPA 220 (407)
Q Consensus 183 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~--gLeISQPA 220 (407)
+.+|||++.|.|..++.-.+.+.++.+.+. ++-+.|+-
T Consensus 83 a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~ 122 (241)
T cd06427 83 ARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAP 122 (241)
T ss_pred cCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCc
Confidence 678999999999999988888888877643 44454544
No 45
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=27.24 E-value=1.1e+02 Score=28.94 Aligned_cols=89 Identities=15% Similarity=0.166 Sum_probs=54.2
Q ss_pred CCcEEEEEeccccccchhhHhhcCCCCCcEEEEEEecCccCcccccccccceeEEeeecccchhhhccccChhhhccccE
Q 015422 108 PMNLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNY 187 (407)
Q Consensus 108 ~k~Lla~~VG~kqk~~Vd~~v~kf~~~nF~vmLfhYDg~vd~W~d~ews~~aiHvsa~kQtKwwfakRfLHPdiv~~YdY 187 (407)
+-.+..++-|++.. +.+++-+-....++.+-+..++ ..++..+++.. -|. ++.-| .|++=|+++..||-
T Consensus 30 ~~~~~il~~~is~~-~~~~L~~~~~~~~~~i~~~~~~--~~~~~~~~~~~--~~~-----~~~~y-~RL~i~~llp~~~k 98 (246)
T cd00505 30 PLRFHVLTNPLSDT-FKAALDNLRKLYNFNYELIPVD--ILDSVDSEHLK--RPI-----KIVTL-TKLHLPNLVPDYDK 98 (246)
T ss_pred CeEEEEEEccccHH-HHHHHHHHHhccCceEEEEecc--ccCcchhhhhc--Ccc-----cccee-HHHHHHHHhhccCe
Confidence 34567777776642 4444333222246777776664 23444444320 111 33333 44666999888999
Q ss_pred EEEecccccCCCCChHHHHHH
Q 015422 188 IFLWDEDIGVENFNPRRYLSI 208 (407)
Q Consensus 188 IflwDdDL~vd~f~i~ry~~I 208 (407)
|...|.|+.|- -+++.++++
T Consensus 99 vlYLD~D~iv~-~di~~L~~~ 118 (246)
T cd00505 99 ILYVDADILVL-TDIDELWDT 118 (246)
T ss_pred EEEEcCCeeec-cCHHHHhhc
Confidence 99999999986 688888865
No 46
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=27.21 E-value=58 Score=32.95 Aligned_cols=33 Identities=30% Similarity=0.467 Sum_probs=29.7
Q ss_pred ccEEEEecccccCCCCChHHHHHHHHHhCCccc
Q 015422 185 YNYIFLWDEDIGVENFNPRRYLSIVKDEGLEIS 217 (407)
Q Consensus 185 YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeIS 217 (407)
+|||++.|.|..++...++++++.+++.+..+.
T Consensus 134 gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~v 166 (384)
T TIGR03469 134 ADYLLLTDADIAHGPDNLARLVARARAEGLDLV 166 (384)
T ss_pred CCEEEEECCCCCCChhHHHHHHHHHHhCCCCEE
Confidence 999999999999999999999999988776654
No 47
>PRK10927 essential cell division protein FtsN; Provisional
Probab=26.22 E-value=50 Score=34.18 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=20.0
Q ss_pred hhhhHHHHHHHHHHhhcccceechhhh
Q 015422 21 CSLFIAAALICSVYFIGSSFVAKENKE 47 (407)
Q Consensus 21 ~~~~~~~~~~~~~~fi~~~~~~~~~~~ 47 (407)
...+.++++++++.|||+.|..+++|.
T Consensus 33 ~~~m~alAvavlv~fiGGLyFith~k~ 59 (319)
T PRK10927 33 SPAMVAIAAAVLVTFIGGLYFITHHKK 59 (319)
T ss_pred chHHHHHHHHHHHHHhhheEEEecCCC
Confidence 344566666778889999988888764
No 48
>TIGR02165 cas_GSU0054 CRISPR-associated protein, GSU0054 family. This model represents a rare CRISPR-associated protein. So far, members are found in Geobacter sulfurreducens and in two unpublished genomes: Gemmata obscuriglobus and Actinomyces naeslundii.CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.
Probab=25.47 E-value=14 Score=38.85 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=24.1
Q ss_pred CCCCCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhh
Q 015422 258 STAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGY 302 (407)
Q Consensus 258 ~~~ppcTgFVEiMAPVFSR~AwrCvw~miqNDLvhGWGLD~~w~~ 302 (407)
++.|.++.++|+.+ .|-||=.+-|||+|++.|.
T Consensus 75 ~~~pe~a~~~e~iv------------~~A~~i~hLGWGiDmv~G~ 107 (465)
T TIGR02165 75 PTAPEFADHKEAIV------------EAAQNINHLGWGIDMVAGD 107 (465)
T ss_pred CCCchHHHHHHHHH------------HHHhhccccccchhhcccc
Confidence 45555555555532 6789999999999999864
No 49
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=24.55 E-value=51 Score=28.10 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=19.8
Q ss_pred ccccEEEEecccccCCCCChHHHHHH
Q 015422 183 AEYNYIFLWDEDIGVENFNPRRYLSI 208 (407)
Q Consensus 183 ~~YdYIflwDdDL~vd~f~i~ry~~I 208 (407)
+.+|||+++|+|..++..-+.+.++.
T Consensus 78 a~g~~i~~lD~D~~~~~~~l~~~~~~ 103 (182)
T cd06420 78 AKGDYLIFIDGDCIPHPDFIADHIEL 103 (182)
T ss_pred hcCCEEEEEcCCcccCHHHHHHHHHH
Confidence 67999999999998866555555544
No 50
>PF14538 Raptor_N: Raptor N-terminal CASPase like domain
Probab=23.13 E-value=46 Score=30.59 Aligned_cols=11 Identities=45% Similarity=0.751 Sum_probs=9.6
Q ss_pred cEEEEEEecCc
Q 015422 136 FVVMLFHYDGV 146 (407)
Q Consensus 136 F~vmLfhYDg~ 146 (407)
-+-+||||-|.
T Consensus 90 ~~RvLFHYnGh 100 (154)
T PF14538_consen 90 DERVLFHYNGH 100 (154)
T ss_pred CceEEEEECCC
Confidence 49999999985
No 51
>PLN02867 Probable galacturonosyltransferase
Probab=22.96 E-value=38 Score=37.23 Aligned_cols=34 Identities=21% Similarity=0.439 Sum_probs=29.9
Q ss_pred ccccChhhhccccEEEEecccccCCCCChHHHHHH
Q 015422 174 KRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSI 208 (407)
Q Consensus 174 kRfLHPdiv~~YdYIflwDdDL~vd~f~i~ry~~I 208 (407)
-||+=||++.++|-|...|+|+-|.. |+..++++
T Consensus 334 lRflIPeLLP~LdKVLYLD~DVVVqg-DLseLwdi 367 (535)
T PLN02867 334 LRIYIPELFPDLNKIVFLDDDVVVQH-DLSSLWEL 367 (535)
T ss_pred HHHHHHHHhhccCeEEEecCCEEEcC-chHHHHhC
Confidence 35666999999999999999999987 88888876
No 52
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=22.09 E-value=1e+02 Score=34.78 Aligned_cols=96 Identities=20% Similarity=0.297 Sum_probs=68.1
Q ss_pred ccccccchhhHhhcCCCCCcEEEEEEecCc-------------------c-------CcccccccccceeEEeeecccch
Q 015422 117 GIKQKKIVDQIVRKFPSKDFVVMLFHYDGV-------------------V-------DEWKDLVWADRAIHVSAANQTKW 170 (407)
Q Consensus 117 G~kqk~~Vd~~v~kf~~~nF~vmLfhYDg~-------------------v-------d~W~d~ews~~aiHvsa~kQtKw 170 (407)
|..-|+.-.++=-..+.++|+||++-|.-. | +--+|+-|-+-.+-|....-.|=
T Consensus 632 gGsGkEF~~aLGGN~pREQFTvVmLTYERe~VLm~sLeRL~gLPYLnKvvVVWNspk~P~ddl~WPdigvPv~viR~~~N 711 (907)
T KOG2264|consen 632 GGSGKEFSKALGGNRPREQFTVVMLTYEREAVLMGSLERLHGLPYLNKVVVVWNSPKDPPDDLTWPDIGVPVEVIRVAEN 711 (907)
T ss_pred CCchHHHHHHhcCCCccceEEEEEEEehHHHHHHHHHHHhhCCcccceEEEEeCCCCCChhcccCcCCCCceEEEEcccc
Confidence 445555555555566789999999988532 2 22357888777776766666665
Q ss_pred hhhccccChhhhccccEEEEecccccCCCCChHHHHHHHHHhC
Q 015422 171 WFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEG 213 (407)
Q Consensus 171 wfakRfLHPdiv~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~g 213 (407)
=+-+|||-.|.++ =+.|.=.|||..+-|..|-==|..-|++.
T Consensus 712 sLNNRFlPwd~IE-TEAvLS~DDDahLrhdEI~fgFRVWRE~R 753 (907)
T KOG2264|consen 712 SLNNRFLPWDRIE-TEAVLSLDDDAHLRHDEIIFGFRVWRENR 753 (907)
T ss_pred cccccccCchhhh-heeeeecccchhhhhhheeeeeehhhhcc
Confidence 6788999888774 58999999999998887765555555543
No 53
>KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism]
Probab=21.08 E-value=1.1e+02 Score=31.88 Aligned_cols=75 Identities=16% Similarity=0.160 Sum_probs=62.2
Q ss_pred CCcEEEEEeccccccchhhHhhcCCCCCcEEEE-EEecCccCcccccccccceeEEeeecccchhhhccccChhhh
Q 015422 108 PMNLLAIAAGIKQKKIVDQIVRKFPSKDFVVML-FHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIV 182 (407)
Q Consensus 108 ~k~Lla~~VG~kqk~~Vd~~v~kf~~~nF~vmL-fhYDg~vd~W~d~ews~~aiHvsa~kQtKwwfakRfLHPdiv 182 (407)
...|++--+|.--...++.++.++++.+|..++ +-|-+....=....||-+.--+...+-.-|-+.+-|+||+|.
T Consensus 7 ~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~~~~l~~~~n~p~ykfv~~di~~~~~~~~~~~~~~id 82 (331)
T KOG0747|consen 7 KNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSNLKNLEPVRNSPNYKFVEGDIADADLVLYLFETEEID 82 (331)
T ss_pred ceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccccchhhhhccCCCceEeeccccchHHHHhhhccCchh
Confidence 457888899999899999999999988887766 677777666667889988888888888889999999998653
Done!