BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015424
(407 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TSM|A Chain A, Crystal Structure Of Indole-3-Glycerol Phosphate Synthase
From Brucella Melitensis
pdb|3TSM|B Chain B, Crystal Structure Of Indole-3-Glycerol Phosphate Synthase
From Brucella Melitensis
Length = 272
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 159/282 (56%), Gaps = 18/282 (6%)
Query: 120 GNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPAL 179
G+ +IL +I +K E+ K R L LK + R F+ AL A + G AL
Sbjct: 3 GSMSTDILRKIEAYKREEIAAAKARLALDELKARTRDQSAPRGFLKAL-EAKRAAGQFAL 61
Query: 180 IAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVK 239
IAE+KKASPS+G++R DFDP +A++YE+GGAACLS+LTD F+G+ E L A R A
Sbjct: 62 IAEIKKASPSKGLIRPDFDPPALAKAYEEGGAACLSVLTDTPSFQGAPEFLTAARQA-CS 120
Query: 240 CPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDER 299
P L K+F+ D +Q+Y AR+ GAD +L+I A + D + + LG+ AL+EVHDE
Sbjct: 121 LPALRKDFLFDPYQVYEARSWGADCILIIMASVDDDLAKELEDTAFALGMDALIEVHDEA 180
Query: 300 EMDRVXXXXXXXXXXXXXXXXAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVV 359
EM+R + + + +FEV+ + +++L + + + ++V
Sbjct: 181 EMERALKLSSRL----------LGVNNRNLRSFEVNLAVSERLAK------MAPSDRLLV 224
Query: 360 GESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 401
GESG+FT +D ++++G+ L+GES+++Q D L
Sbjct: 225 GESGIFTHEDCLRLEKSGIGTFLIGESLMRQHDVAAATRALL 266
>pdb|3QJA|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis
Indole-3-Glycerol Phosphate Synthase (Trpc) In Apo Form
pdb|3T40|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Indole
Glycerol Phosphate Synthase (Igps) Complex With
N-2-Carboxyphenyl Glycine (Cpg)
pdb|3T44|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Indole
Glycerol Phosphate Synthase (Igps) In Complex With
Indole Glycerol Phosphate (Igp) Amd Anthranilate
pdb|3T55|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Indole
Glycerol Phosphate Synthase (Igps) In Complex With
Phenoxymethyl Benzoic Acid (Pmba)
pdb|3T78|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Indole
Glycerol Phosphate Synthase (Igps) In Complex With
5-Fluoroanthranilate
Length = 272
Score = 135 bits (339), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 99/280 (35%), Positives = 147/280 (52%), Gaps = 22/280 (7%)
Query: 122 TPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIA 181
+P +L+ I+ +V + LS +K A APP D +MAA + G+ +IA
Sbjct: 2 SPATVLDSILEGVRADVAAREASVSLSEIKAAAAAAPPPLD----VMAALREPGI-GVIA 56
Query: 182 EVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCP 241
EVK+ASPS G L DP ++A++Y+ GGA +S++T+++ F+GS ++L+AVR A V P
Sbjct: 57 EVKRASPSAGALATIADPAKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVR-ASVSIP 115
Query: 242 LLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREM 301
+L K+F+V +QI+ AR GAD +LLI A L + M + LG+TALVEVH E+E
Sbjct: 116 VLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEA 175
Query: 302 DRVXXXXXXXXXXXXXXXXAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGE 361
DR I + + T +VD ++ G +IR + E
Sbjct: 176 DR----------ALKAGAKVIGVNARDLMTLDVDRDCFARIAPGLPSSVIR------IAE 219
Query: 362 SGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 401
SG+ D+ AG AVLVGE +V DP + L
Sbjct: 220 SGVRGTADLLAYAGAGADAVLVGEGLVTSGDPRAAVADLV 259
>pdb|1PII|A Chain A, Three-Dimensional Structure Of The Bifunctional Enzyme
Phosphoribosylanthranilate Isomerase:
Indoleglycerolphosphate Synthase From Escherichia Coli
Refined At 2.0 Angstroms Resolution
Length = 452
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/271 (35%), Positives = 141/271 (52%), Gaps = 30/271 (11%)
Query: 124 RNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEV 183
+ +L +IV K + V KQ++PL+ +N + P R F AL A RT A I E
Sbjct: 2 QTVLAKIVADKAIWVEARKQQQPLASFQNEVQ--PSTRHFYDALQGA--RT---AFILEC 54
Query: 184 KKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL 243
KKASPS+G++R+DFDP IA Y K A+ +S+LTDEKYF+GSF L V + P+L
Sbjct: 55 KKASPSKGVIRDDFDPARIAAIY-KHYASAISVLTDEKYFQGSFNFLPIVSQIAPQ-PIL 112
Query: 244 CKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDR 303
CK+FI+D +QIY AR ADA LL+ +VL D R + + L + L EV +E E +R
Sbjct: 113 CKDFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQER 172
Query: 304 VXXXXXXXXXXXXXXXXAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESG 363
+ I + +D + T++L + G N+ V+ ESG
Sbjct: 173 A----------IALGAKVVGINNRDLRDLSIDLNRTRELAP-KLGH-----NVTVISESG 216
Query: 364 LFTPDDIAYVQEAG--VKAVLVGESIVKQDD 392
+ T A V+E L+G +++ DD
Sbjct: 217 INT---YAQVRELSHFANGFLIGSALMAHDD 244
>pdb|1JCM|P Chain P, Trpc Stability Mutant Containing An Engineered Disulphide
Bridge And In Complex With A Cdrp-Related Substrate
Length = 259
Score = 131 bits (330), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 97/269 (36%), Positives = 137/269 (50%), Gaps = 30/269 (11%)
Query: 126 ILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKK 185
+L +IV K + V KQ++PL+ +N + P R F AL A RT A I E KK
Sbjct: 4 VLAKIVADKAIWVEARKQQQPLASFQNEVQ--PSTRHFYDALQGA--RT---AFILECKK 56
Query: 186 ASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCK 245
ASPS+G++R+DFDP IA Y K A+ +S+LTDEKYF+GSF L V + P+LCK
Sbjct: 57 ASPSKGVIRDDFDPARIAAIY-KHYASAISVLTDEKYFQGSFNFLPIVSQIAPQ-PILCK 114
Query: 246 EFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVX 305
+FI+D +QIY AR ADA LL+ +VL D R + + L + L EV +E E +R
Sbjct: 115 DFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERAI 174
Query: 306 XXXXXXXXXXXXXXXAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLF 365
+SI + N + L + G N+ V+ ESG+
Sbjct: 175 ALGAKVVGINNRDLCDLSI-----------DLNRTRELAPKLGH-----NVTVISESGIN 218
Query: 366 TPDDIAYVQEAG--VKAVLVGESIVKQDD 392
T A V+E L+G +++ DD
Sbjct: 219 T---YAQVRELSHFANGFLIGSALMAHDD 244
>pdb|4FB7|A Chain A, The Apo Form Of Idole-3-Glycerol Phosphate Synthase (Trpc)
Form Mycobacterium Tuberculosis
Length = 275
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 97/284 (34%), Positives = 144/284 (50%), Gaps = 22/284 (7%)
Query: 118 NEGNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLP 177
+ +P +L+ I+ +V + LS +K A APP D AL + G+
Sbjct: 1 SNAXSPATVLDSILEGVRADVAAREASVSLSEIKAAAAAAPPPLDVXAAL----REPGI- 55
Query: 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAG 237
+IAEVK+ASPS G L DP ++A++Y+ GGA +S++T+++ F+GS ++L+AVR A
Sbjct: 56 GVIAEVKRASPSAGALATIADPAKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVR-AS 114
Query: 238 VKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHD 297
V P+L K+F+V +QI+ AR GAD +LLI A L + + LG TALVEVH
Sbjct: 115 VSIPVLRKDFVVQPYQIHEARAHGADXLLLIVAALEQSVLVSXLDRTESLGXTALVEVHT 174
Query: 298 EREMDRVXXXXXXXXXXXXXXXXAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNII 357
E+E DR I + + T +VD ++ G +IR
Sbjct: 175 EQEADRALKAGAKV----------IGVNARDLXTLDVDRDCFARIAPGLPSSVIR----- 219
Query: 358 VVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 401
+ ESG+ D+ AG AVLVGE +V DP + L
Sbjct: 220 -IAESGVRGTADLLAYAGAGADAVLVGEGLVTSGDPRAAVADLV 262
>pdb|1IGS|A Chain A, Indole-3-Glycerolphosphate Synthase From Sulfolobus
Solfataricus At 2.0 A Resolution
pdb|1JUK|A Chain A, Indole-3-Glycerolphosphate Synthase From Sulfolobus
Solfataricus In A Trigonal Crystal Form
pdb|1JUL|A Chain A, Indole-3-Glycerolphosphate Synthase From Sulfolobus
Solfataricus In A Second Orthorhombic Crystal Form
Length = 248
Score = 111 bits (278), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 132/259 (50%), Gaps = 27/259 (10%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W KDV QL RRP P ++ N+R + A+IAE K+ SPS
Sbjct: 8 WLKDV--VQLSLRRP----SFRASRQRPIISLNERILEFNKR-NITAIIAEYKRKSPSG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E ++ E+ A LSILT+EKYF GS+E L + S+ V P+L K+FIV
Sbjct: 60 -LDVERDPIEYSKFMERY-AVGLSILTEEKYFNGSYETLRKIASS-VSIPILMKDFIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
QI A GAD VLLI +L + ++ + + + G+ L+E++DE ++D
Sbjct: 117 SQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLIEINDENDLD--------- 167
Query: 312 XXXXXXXXXAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIA 371
I I S ET E++ N +KL+ + N++ V ESG+ ++I
Sbjct: 168 -IALRIGARFIGINSRDLETLEINKENQRKLIS------MIPSNVVKVAESGISERNEIE 220
Query: 372 YVQEAGVKAVLVGESIVKQ 390
+++ GV A L+G S+++
Sbjct: 221 ELRKLGVNAFLIGSSLMRN 239
>pdb|1LBF|A Chain A, Crystal Structure Of Indole-3-Glycerol Phosphate Syntase
(Igps)with Reduced
1-(O-Caboxyphenylamino)-1-Deoxyribulose 5-Phosphate
(Rcdrp)
pdb|1LBL|A Chain A, Crystal Structure Of Indole-3-Glycerol Phosphate Synthase
(Igps) In Complex With 1-(O-Carboxyphenylamino)-1-
Deoxyribulose 5'-Phosphate (Cdrp)
pdb|1A53|A Chain A, Complex Of Indole-3-Glycerolphosphate Synthase From
Sulfolobus Solfataricus With Indole-3-Glycerolphosphate
At 2.0 A Resolution
Length = 247
Score = 111 bits (278), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 132/259 (50%), Gaps = 27/259 (10%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W KDV QL RRP P ++ N+R + A+IAE K+ SPS
Sbjct: 7 WLKDV--VQLSLRRP----SFRASRQRPIISLNERILEFNKR-NITAIIAEYKRKSPSG- 58
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E ++ E+ A LSILT+EKYF GS+E L + S+ V P+L K+FIV
Sbjct: 59 -LDVERDPIEYSKFMERY-AVGLSILTEEKYFNGSYETLRKIASS-VSIPILMKDFIVKE 115
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
QI A GAD VLLI +L + ++ + + + G+ L+E++DE ++D
Sbjct: 116 SQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLIEINDENDLD--------- 166
Query: 312 XXXXXXXXXAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIA 371
I I S ET E++ N +KL+ + N++ V ESG+ ++I
Sbjct: 167 -IALRIGARFIGINSRDLETLEINKENQRKLIS------MIPSNVVKVAESGISERNEIE 219
Query: 372 YVQEAGVKAVLVGESIVKQ 390
+++ GV A L+G S+++
Sbjct: 220 ELRKLGVNAFLIGSSLMRN 238
>pdb|1VC4|A Chain A, Crystal Structure Of Indole-3-Glycerol Phosphate Synthase
(Trpc) From Thermus Thermophilus At 1.8 A Resolution
pdb|1VC4|B Chain B, Crystal Structure Of Indole-3-Glycerol Phosphate Synthase
(Trpc) From Thermus Thermophilus At 1.8 A Resolution
Length = 254
Score = 111 bits (277), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 125/232 (53%), Gaps = 22/232 (9%)
Query: 173 RTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEA 232
R GL ++IAEVK+ SPS G++RE DPVE A +Y +GGA +S+LT+ F GS +L+
Sbjct: 43 RPGL-SVIAEVKRQSPSEGLIRE-VDPVEAALAYARGGARAVSVLTEPHRFGGSLLDLKR 100
Query: 233 VRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTAL 292
VR A V PLL K+F+VD + + AR GA A LLI A+L +L Y+ + + LGL AL
Sbjct: 101 VREA-VDLPLLRKDFVVDPFMLEEARAFGASAALLIVALLGELTGAYLEE-ARRLGLEAL 158
Query: 293 VEVHDEREMDRVXXXXXXXXXXXXXXXXAISIFSYRTETFEVDNSNTKKLLEGERGEIIR 352
VEVH ERE++ + I + T ++ +L G + R
Sbjct: 159 VEVHTERELE----------IALEAGAEVLGINNRDLATLHINLETAPRL-----GRLAR 203
Query: 353 QKNI--IVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 402
++ ++V ESG +++ + E AVL+G S+++ D + L G
Sbjct: 204 KRGFGGVLVAESGYSRKEELKAL-EGLFDAVLIGTSLMRAPDLEAALRELVG 254
>pdb|2C3Z|A Chain A, Crystal Structure Of A Truncated Variant Of Indole-3-
Glycerol Phosphate Synthase From Sulfolobus Solfataricus
Length = 222
Score = 107 bits (268), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 122/224 (54%), Gaps = 21/224 (9%)
Query: 167 LMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGS 226
++ N+R + A+IAE K+ SPS L + DP+E ++ E+ A LSILT+EKYF GS
Sbjct: 11 ILEFNKR-NITAIIAEYKRKSPSG--LDVERDPIEYSKFMERY-AVGLSILTEEKYFNGS 66
Query: 227 FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKL 286
+E L + S+ V P+L K+FIV QI A GAD VLLI +L + ++ + + +
Sbjct: 67 YETLRKIASS-VSIPILMKDFIVKESQIDDAYNLGADTVLLIVKILTERELESLLEYARS 125
Query: 287 LGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXAISIFSYRTETFEVDNSNTKKLLEGE 346
G+ L+E++DE ++D I I S ET E++ N +KL+
Sbjct: 126 YGMEPLIEINDENDLD----------IALRIGARFIGINSRDLETLEINKENQRKLIS-- 173
Query: 347 RGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 390
+ N++ V ESG+ ++I +++ GV A L+G S+++
Sbjct: 174 ----MIPSNVVKVAESGISERNEIEELRKLGVNAFLIGSSLMRN 213
>pdb|3UZ5|A Chain A, Designed Protein Ke59 R13 311H
pdb|3UZ5|B Chain B, Designed Protein Ke59 R13 311H
pdb|3UZJ|A Chain A, Designed Protein Ke59 R13 311H WITH BENZOTRIAZOLE
pdb|3UZJ|B Chain B, Designed Protein Ke59 R13 311H WITH BENZOTRIAZOLE
Length = 252
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 127/259 (49%), Gaps = 27/259 (10%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W +DV Q QRRP P ++ N+R + A++A K+ SPS
Sbjct: 8 WLEDV--VQRSQRRP----SVRASRQRPIISLKERILEFNKRN-ITAIMAVYKRKSPSG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E A+ E+G L+ILT+EKYF GS+E+L + S+ V P+L + IV
Sbjct: 60 -LDVERDPIEYAKFMERG-VVGLAILTEEKYFNGSYEDLRKIASS-VSVPILMWDIIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
QI A GAD V LI +L + ++ + + + LG+ + +HDE ++D
Sbjct: 117 SQIDDAYNLGADTVGLIVKILTERELESLLEYARSLGMEPAIVIHDENDLD--------- 167
Query: 312 XXXXXXXXXAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIA 371
I I S+ ET E++N N +KL+ + N++ V SG+ ++I
Sbjct: 168 -IALRIGARFIIITSHDLETLEINNENQRKLIS------MIPSNVVKVVASGISERNEIE 220
Query: 372 YVQEAGVKAVLVGESIVKQ 390
+ + GV A +G S+++
Sbjct: 221 ELYKLGVNAFEIGTSLMRN 239
>pdb|4A2R|A Chain A, Structure Of The Engineered Retro-Aldolase Ra95.5-5
Length = 258
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 130/262 (49%), Gaps = 33/262 (12%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGA---LMAANQRTGLPALIAEVKKASP 188
W +DV QL RRP +A R I ++ N ++ + A+IA + SP
Sbjct: 8 WLEDV--VQLSLRRPSV-------HASRQRPIISLNERILEFN-KSNITAIIAYYTRKSP 57
Query: 189 SRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFI 248
S L + DP+E A+ E+ A LSI T+EKYF GS+E L + S+ V P+L +FI
Sbjct: 58 SG--LDVERDPIEYAKFMERY-AVGLSIKTEEKYFNGSYEMLRKIASS-VSIPILMNDFI 113
Query: 249 VDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXX 308
V QI A GAD VLLI +L + ++ + + + G+ L+ ++DE ++D
Sbjct: 114 VKESQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLILINDENDLD------ 167
Query: 309 XXXXXXXXXXXXAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPD 368
ISIFS ET E++ N +KL+ + N++ V + G+ +
Sbjct: 168 ----IALRIGARFISIFSMNFETGEINKENQRKLIS------MIPSNVVKVAKLGISERN 217
Query: 369 DIAYVQEAGVKAVLVGESIVKQ 390
+I +++ GV A L+ S+++
Sbjct: 218 EIEELRKLGVNAFLISSSLMRN 239
>pdb|4A2S|A Chain A, Structure Of The Engineered Retro-aldolase Ra95.5
Length = 258
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 126/259 (48%), Gaps = 27/259 (10%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W +DV QL RRP P ++ N+R + A+IA + SPS
Sbjct: 8 WLEDV--VQLSLRRP----SVRASRQRPIISLNERILEFNKR-NITAIIAYYSRKSPSG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E A+ E+ A LSI T+EKYF GS+E L + S+ V P+L +FIV
Sbjct: 60 -LDVERDPIEYAKFMERY-AVGLSIKTEEKYFNGSYETLRKIASS-VSIPILMSDFIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
QI A GAD VLLI +L + ++ + + + G+ L+ ++DE ++D
Sbjct: 117 SQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLILINDENDLD--------- 167
Query: 312 XXXXXXXXXAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIA 371
I IFS ET E++ N +KL+ + N++ V + G+ ++I
Sbjct: 168 -IALRIGARFIGIFSMNFETGEINKENQRKLIS------MIPSNVVKVAKLGISERNEIE 220
Query: 372 YVQEAGVKAVLVGESIVKQ 390
+++ GV A L+ S+++
Sbjct: 221 ELRKLGVNAFLISSSLMRN 239
>pdb|1J5T|A Chain A, Crystal Structure Of Indole-3-glycerol Phosphate Synthase
(tm0140) From Thermotoga Maritima At 3.0 A Resolution
Length = 242
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 116/215 (53%), Gaps = 18/215 (8%)
Query: 179 LIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGV 238
+IAE KKASPS G + D + R Y++ A +SILT++ YFKG + A R+
Sbjct: 34 IIAEFKKASPSAGDINADASLEDFIRMYDELADA-ISILTEKHYFKGDPAFVRAARNLTC 92
Query: 239 KCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDE 298
+ P+L K+F +D Q+ A + GADA+L+IA +L I+ + + + LG+ +LVEVH
Sbjct: 93 R-PILAKDFYIDTVQVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSR 151
Query: 299 REMDRVXXXXXXXXXXXXXXXXAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIV 358
++++V I I + +TFE+ + +LL + + +V
Sbjct: 152 EDLEKVFSVIRPKI---------IGINTRDLDTFEIKKNVLWELLP------LVPDDTVV 196
Query: 359 VGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDP 393
V ESG+ P ++ ++ V AVLVG SI+K ++P
Sbjct: 197 VAESGIKDPRELKDLR-GKVNAVLVGTSIMKAENP 230
>pdb|4IJB|A Chain A, Crystal Structure Of Engineered Protein, Northeast
Structural Genomics Consortium Target Or288
Length = 256
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 128/269 (47%), Gaps = 27/269 (10%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W +DV QL RRP P ++ N+R + A+IA + SPS
Sbjct: 8 WLEDV--VQLSLRRP----SVRASRQRPIISLNERILEFNKRN-ITAIIALYXRKSPSG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E A+ E+ A LSI+T+EKYF GS+E L + S+ V P+L +FIV
Sbjct: 60 -LDVERDPIEYAKFXERY-AVGLSIVTEEKYFNGSYETLRKIASS-VSIPILXNDFIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
QI A GAD V L +L + ++ + + + G L+E++DE ++D
Sbjct: 117 SQIDDAYNLGADTVALKVKILTERELESLLEYARSYGXEPLIEINDENDLD--------- 167
Query: 312 XXXXXXXXXAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIA 371
I I+S ET E++ N +KL+ N++ V G+ ++I
Sbjct: 168 -IALRIGARFIGIWSQDNETLEINKENQRKLISX------IPSNVVKVAGGGISERNEIE 220
Query: 372 YVQEAGVKAVLVGESIVKQDDPGKGITGL 400
+++ GV A L+GES+ + + K + L
Sbjct: 221 ELRKLGVNAFLIGESLXRNPEKIKELIEL 249
>pdb|1I4N|A Chain A, Crystal Structure Of Indoleglycerol Phosphate Synthase
From Thermotoga Maritima
pdb|1I4N|B Chain B, Crystal Structure Of Indoleglycerol Phosphate Synthase
From Thermotoga Maritima
Length = 251
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 117/217 (53%), Gaps = 18/217 (8%)
Query: 179 LIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGV 238
+IAE KKASPS G + D + R Y++ A +SILT++ YFKG + A R+
Sbjct: 43 IIAEFKKASPSAGDINADASLEDFIRMYDELADA-ISILTEKHYFKGDPAFVRAARNLTC 101
Query: 239 KCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDE 298
+ P+L K+F +D Q+ A + GADA+L+IA +L I+ + + + LG+ +LVEVH
Sbjct: 102 R-PILAKDFYIDTVQVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSR 160
Query: 299 REMDRVXXXXXXXXXXXXXXXXAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIV 358
++++V I I + +TFE+ + +LL + + +V
Sbjct: 161 EDLEKVFSVIRPKI---------IGINTRDLDTFEIKKNVLWELLP------LVPDDTVV 205
Query: 359 VGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGK 395
V ESG+ P ++ ++ V AVLVG SI+K ++P +
Sbjct: 206 VAESGIKDPRELKDLR-GKVNAVLVGTSIMKAENPRR 241
>pdb|4A29|A Chain A, Structure Of The Engineered Retro-Aldolase Ra95.0
Length = 258
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 126/259 (48%), Gaps = 27/259 (10%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W +DV QL RRP P ++ N+R + A+IA ++ SPS
Sbjct: 8 WLEDV--VQLSLRRP----SVRASRQRPIISLNERILEFNKR-NITAIIAVYERKSPSG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E A+ E+ A LSI T+EKYF GS+E L + S+ V P+L +FIV
Sbjct: 60 -LDVERDPIEYAKFMERY-AVGLSITTEEKYFNGSYETLRKIASS-VSIPILMSDFIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
QI A GAD VLLI +L + ++ + + + G+ L+ ++DE ++D
Sbjct: 117 SQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLILINDENDLD--------- 167
Query: 312 XXXXXXXXXAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIA 371
I I S ET E++ N +KL+ + N++ V + G+ ++I
Sbjct: 168 -IALRIGARFIGIMSRDFETGEINKENQRKLIS------MIPSNVVKVAKLGISERNEIE 220
Query: 372 YVQEAGVKAVLVGESIVKQ 390
+++ GV A L+ S+++
Sbjct: 221 ELRKLGVNAFLISSSLMRN 239
>pdb|3TC6|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or63
Length = 258
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 126/259 (48%), Gaps = 27/259 (10%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W +DV QL RRP P ++ N+R + A+IAE K+ SPS
Sbjct: 8 WLEDV--VQLSLRRP----SVRASRQRPIISLNERILEFNKR-NITAIIAEYKRKSPSG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E A+ E+ A L ILT+EKYF GS+E L + S+ V P+ + IV
Sbjct: 60 -LDVERDPIEYAKFMERY-AVGLKILTEEKYFNGSYETLRKIASS-VSIPIAMSDAIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
QI A GAD V+LI +L + ++ + + + G+ L+ ++DE ++D
Sbjct: 117 SQIDDAYNLGADTVVLIVKILTERELESLLEYARSYGMEPLIVINDENDLD--------- 167
Query: 312 XXXXXXXXXAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIA 371
I I S ET E++ N +KL+ + N++ V +G+ ++I
Sbjct: 168 -IALRIGARFIGIESRDWETLEINKENQRKLIS------MIPSNVVKVAIAGISERNEIE 220
Query: 372 YVQEAGVKAVLVGESIVKQ 390
+++ GV A L+G S+++
Sbjct: 221 ELRKLGVNAFLIGSSLMRN 239
>pdb|3UYC|A Chain A, Designed Protein Ke59 R8_27A
pdb|3UYC|B Chain B, Designed Protein Ke59 R8_27A
Length = 249
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 134/271 (49%), Gaps = 33/271 (12%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGA---LMAANQRTGLPALIAEVKKASP 188
W +DV QL RRP S+ +A R I ++ N+R A+IA K+ SP
Sbjct: 8 WLEDV--VQLSLRRP-SL------HASRQRPIISLRERILEFNKRNN-TAIIAVYKRKSP 57
Query: 189 SRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFI 248
S L + DP+E A+ E+G L+ILT+EKYF GS+E+L + S+ V P+L + I
Sbjct: 58 SG--LNVERDPIEYAKFMERG-VVGLAILTEEKYFNGSYEDLRKIASS-VSIPILMWDII 113
Query: 249 VDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXX 308
V QI A GAD V LI +L + +++ + + + G+ + ++DE ++D
Sbjct: 114 VKESQIDDAYNLGADTVGLIVKILTERELKSLLEYARSYGMEPAIVINDENDLD------ 167
Query: 309 XXXXXXXXXXXXAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPD 368
I I S+ ET E++ N +KL+ ++++ V SG+ +
Sbjct: 168 ----IALRIGARFIIISSHDLETLEINKENQRKLISMVPSDVVK------VVASGISERN 217
Query: 369 DIAYVQEAGVKAVLVGESIVKQDDPGKGITG 399
+I +++ GV A +G S+++ + K G
Sbjct: 218 EIEELRKLGVNAFEIGSSLMRNPEKIKEFIG 248
>pdb|3TC7|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or62
Length = 258
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 125/259 (48%), Gaps = 27/259 (10%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W +DV QL RRP P ++ N+R + A+IAE K+ PS
Sbjct: 8 WLEDV--VQLSLRRP----SVRASRQRPIISLNERILEFNKRN-ITAIIAEYKRKDPSG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E A+ E+ A L I T+EKYF GS+E L + S+ V P+L +FIV
Sbjct: 60 -LDVERDPIEYAKFMERY-AVGLFISTEEKYFNGSYETLRKIASS-VSIPILMYDFIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
QI A GAD V LI +L + ++ + + + G+ L+ ++DE ++D
Sbjct: 117 SQIDDAYNLGADTVALIVKILTERELESLLEYARSYGMEPLIIINDENDLD--------- 167
Query: 312 XXXXXXXXXAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIA 371
I I + ET E++ N +KL+ + N++ V + G+ ++I
Sbjct: 168 -IALRIGARFIGIAARDWETGEINKENQRKLIS------MIPSNVVKVAKEGISERNEIE 220
Query: 372 YVQEAGVKAVLVGESIVKQ 390
+++ GV A L+G S+++
Sbjct: 221 ELRKLGVNAFLIGSSLMRN 239
>pdb|3UY8|A Chain A, Designed Protein Ke59 R5_115F
pdb|3UY8|B Chain B, Designed Protein Ke59 R5_115F
Length = 247
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 128/259 (49%), Gaps = 27/259 (10%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W +DV QL RRP L+ + P ++ N+R A+IA K+ SPS
Sbjct: 7 WLEDV--VQLSLRRP--SLRAS--RQRPIISLKERILEFNKRNN-TAIIAVYKRKSPSG- 58
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E A+ E+ A L+ILT+EKYF GS+E+L + S+ V P+L +FIV
Sbjct: 59 -LDVERDPIEYAKFMERY-AVGLAILTEEKYFNGSYEDLRKIASS-VSIPILMWDFIVKE 115
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
QI A GAD V LI +L + ++ + + + G+ + ++DE ++D
Sbjct: 116 SQIDDAYNLGADTVGLIVKILTERELESLLEYARSYGMEPAIVINDENDLD--------- 166
Query: 312 XXXXXXXXXAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIA 371
I I S+ ET E++ N +KL+ + N++ V SG+ ++I
Sbjct: 167 -IALRIGARFIIISSHDLETLEINKENQRKLIS------MIPSNVVKVVASGISERNEIE 219
Query: 372 YVQEAGVKAVLVGESIVKQ 390
+ + GV A +G S+++
Sbjct: 220 ELYKLGVNAFEIGSSLMRN 238
>pdb|3UY7|A Chain A, Designed Protein Ke59 R1 710H WITH G130S MUTATION
pdb|3UY7|B Chain B, Designed Protein Ke59 R1 710H WITH G130S MUTATION
Length = 252
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 126/254 (49%), Gaps = 25/254 (9%)
Query: 137 EVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILRED 196
+V QL RRP L+ + P ++ N+R + A+IA K+ SPS L +
Sbjct: 11 DVVQLSLRRP--SLRAS--RQRPIISLRERILEFNKR-NITAIIAVYKRKSPSG--LDVE 63
Query: 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYY 256
DP+E A+ E+ A L ILT+EKYF GS+E+L + S+ V P+L +FIV QI
Sbjct: 64 RDPIEYAKFMERY-AVGLVILTEEKYFNGSYEDLRKIASS-VSIPILMWDFIVKESQIDD 121
Query: 257 ARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXXXXXXX 316
A GAD V LI +L + ++ + + + G+ + ++DE ++D
Sbjct: 122 AYNLGADTVSLIVKILTERELESLLEYARSYGMEPAIVINDEEDLD----------IALR 171
Query: 317 XXXXAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEA 376
I I S ET E++ N +KL+ + N++ V SG+ ++I +++
Sbjct: 172 IGARIIIISSRDLETLEINKENQRKLIS------MIPSNVVKVAASGISERNEIEELRKL 225
Query: 377 GVKAVLVGESIVKQ 390
GV A +G S+++
Sbjct: 226 GVNAFEIGSSLMRN 239
>pdb|3NYZ|A Chain A, Crystal Structure Of Kemp Elimination Catalyst 1a53-2
pdb|3NYZ|B Chain B, Crystal Structure Of Kemp Elimination Catalyst 1a53-2
pdb|3NZ1|A Chain A, Crystal Structure Of Kemp Elimination Catalyst 1a53-2
Complexed With Transition State Analog 5-Nitro
Benzotriazole
Length = 261
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 123/259 (47%), Gaps = 27/259 (10%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W KDV QL RRP P ++ N+R + A+IA K+ SPS
Sbjct: 8 WLKDV--VQLSLRRP----SFRASRQRPIISLNERILEFNKRN-ITAIIAAYKRKSPSG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E ++ E+ A L+I T+EKYF GS+E L + S+ V P+L +FIV
Sbjct: 60 -LDVERDPIEYSKFMERY-AVGLAIATEEKYFNGSYETLRKIASS-VSIPILMWDFIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
QI A GAD V LI +L + ++ + + + G+ + ++DE ++D
Sbjct: 117 SQIDDAYNLGADTVALIVKILTERELESLLEYARSYGMEPAIVINDENDLD--------- 167
Query: 312 XXXXXXXXXAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIA 371
I I S ET E++ N +KL+ + N++ V G+ ++I
Sbjct: 168 -IALRIGARFIEIASRDLETLEINKENQRKLIS------MIPSNVVKVAWQGISERNEIE 220
Query: 372 YVQEAGVKAVLVGESIVKQ 390
+++ GV A +G S+++
Sbjct: 221 ELRKLGVNAFGIGSSLMRN 239
>pdb|3HOJ|A Chain A, Crystal Structure Of A Novel Engineered Retroaldolase:
Ra-22
Length = 248
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 123/259 (47%), Gaps = 27/259 (10%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W KDV QL RRP P ++ N+R + A+IA + SPS
Sbjct: 8 WLKDV--VQLSLRRP----SFRASRQRPIISLNERILEFNKR-NITAIIAGYDRKSPSG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E ++ E+ A LSI T+EKYF GS+E L + S+ V P+L +FIV
Sbjct: 60 -LDVERDPIEYSKFMERY-AVGLSITTEEKYFNGSYETLRKIASS-VSIPILMADFIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
QI A GAD V LI +L + ++ + + + G+ L++++DE ++D
Sbjct: 117 SQIDDAYNLGADTVALIVKILTERELESLLEYARSYGMEPLIKINDENDLD--------- 167
Query: 312 XXXXXXXXXAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIA 371
I I S ET E++ N +KL+ + N++ V G+ ++I
Sbjct: 168 -IALRIGARFIGIVSADWETLEINKENQRKLIS------MIPSNVVKVAAFGISERNEIE 220
Query: 372 YVQEAGVKAVLVGESIVKQ 390
+++ GV A + S+++
Sbjct: 221 ELRKLGVNAFSIHSSLMRN 239
>pdb|3UXA|A Chain A, Designed Protein Ke59 R1 710H
pdb|3UXA|B Chain B, Designed Protein Ke59 R1 710H
pdb|3UXD|A Chain A, Designed Protein Ke59 R1 710H WITH DICHLOROBENZOTRIAZOLE
(DBT)
pdb|3UXD|B Chain B, Designed Protein Ke59 R1 710H WITH DICHLOROBENZOTRIAZOLE
(DBT)
Length = 252
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 126/254 (49%), Gaps = 25/254 (9%)
Query: 137 EVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILRED 196
+V QL RRP L+ + P ++ N+R + A+IA K+ SPS L +
Sbjct: 11 DVVQLSLRRP--SLRAS--RQRPIISLRERILEFNKR-NITAIIAVYKRKSPSG--LDVE 63
Query: 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYY 256
DP+E A+ E+ A L ILT+EKYF GS+E+L + S+ V P+L +FIV QI
Sbjct: 64 RDPIEYAKFMERY-AVGLVILTEEKYFNGSYEDLRKIASS-VSIPILMWDFIVKESQIDD 121
Query: 257 ARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXXXXXXX 316
A GAD V LI +L + ++ + + + G+ + ++DE ++D
Sbjct: 122 AYNLGADTVGLIVKILTERELESLLEYARSYGMEPAIVINDEEDLD----------IALR 171
Query: 317 XXXXAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEA 376
I I S ET E++ N +KL+ + N++ V SG+ ++I +++
Sbjct: 172 IGARIIIISSRDLETLEINKENQRKLIS------MIPSNVVKVAASGISERNEIEELRKL 225
Query: 377 GVKAVLVGESIVKQ 390
GV A +G S+++
Sbjct: 226 GVNAFEIGSSLMRN 239
>pdb|3O6Y|X Chain X, Robust Computational Design, Optimization, And Structural
Characterization Of Retroaldol Enzymes
pdb|3UD6|A Chain A, Structural Analyses Of Covalent Enzyme-Substrate Analogue
Complexes Reveal Strengths And Limitations Of De Novo
Enzyme Design
Length = 258
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 122/259 (47%), Gaps = 27/259 (10%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W +DV QL RRP P ++ N+R + A+IA + SP
Sbjct: 8 WLEDV--VQLSLRRP----SVRASRQRPIISLNERILEFNKR-NITAIIATYMRKSPWG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E A+ E+ A LSI T+EKY GS+E L + S+ V P+L +FIV
Sbjct: 60 -LDVERDPIEYAKFMERY-AVGLSICTEEKYANGSYETLRKIASS-VSIPILMADFIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
QI A GAD V LI +L + ++ + + + G+ +++++DE ++D
Sbjct: 117 SQIDDAYNLGADTVPLIVKILTERELESLLEYARSYGMEPIIKINDENDLD--------- 167
Query: 312 XXXXXXXXXAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIA 371
I I S ET E++ N +KL+ + N++ V +G+ ++I
Sbjct: 168 -IALRIGARFIGICSRDWETLEINKENQRKLIS------MIPSNVVKVASTGISERNEIE 220
Query: 372 YVQEAGVKAVLVGESIVKQ 390
+++ GV A + S+++
Sbjct: 221 ELRKLGVNAFSIISSLMRN 239
>pdb|3NXF|A Chain A, Robust Computational Design, Optimization, And Structural
Characterization Of Retroaldol Enzymes
Length = 258
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 121/259 (46%), Gaps = 27/259 (10%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W +DV QL RRP P ++ N+R + A+IA + SP
Sbjct: 8 WLEDV--VQLSLRRP----SVRASRQRPIISLNERILEFNKR-NITAIIATYMRKSPWG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E A+ E+ A LSI T+EKY GS+E L + S+ V P+L +FIV
Sbjct: 60 -LDVERDPIEYAKFMERY-AVGLSICTEEKYANGSYETLRKIASS-VSIPILMADFIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
QI A GAD V LI +L + ++ + + + G+ ++ ++DE ++D
Sbjct: 117 SQIDDAYNLGADTVPLIVKILTERELESLLEYARSYGMEPIIXINDENDLD--------- 167
Query: 312 XXXXXXXXXAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIA 371
I I S ET E++ N +KL+ + N++ V +G+ ++I
Sbjct: 168 -IALRIGARFIGICSRDWETLEINKENQRKLIS------MIPSNVVKVASTGISERNEIE 220
Query: 372 YVQEAGVKAVLVGESIVKQ 390
+++ GV A + S+++
Sbjct: 221 ELRKLGVNAFSIISSLMRN 239
>pdb|1TYG|A Chain A, Structure Of The Thiazole SynthaseTHIS COMPLEX
pdb|1TYG|C Chain C, Structure Of The Thiazole SynthaseTHIS COMPLEX
Length = 253
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 350 IIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGK 395
II Q + V+ ++G+ +P D AY E G VL+ ++ DDP K
Sbjct: 171 IIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGADDPVK 216
>pdb|1XM3|A Chain A, Crystal Structure Of Northeast Structural Genomics Target
Sr156
pdb|1XM3|B Chain B, Crystal Structure Of Northeast Structural Genomics Target
Sr156
pdb|1XM3|C Chain C, Crystal Structure Of Northeast Structural Genomics Target
Sr156
pdb|1XM3|D Chain D, Crystal Structure Of Northeast Structural Genomics Target
Sr156
Length = 264
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 350 IIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGK 395
II Q + V+ ++G+ +P D AY E G VL+ ++ DDP K
Sbjct: 173 IIEQAKVPVIVDAGIGSPKDAAYAXELGADGVLLNTAVSGADDPVK 218
>pdb|1AMI|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
pdb|1AMJ|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
Length = 754
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 134 KDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGIL 193
KD+E Q+ + + + A P F G L + + A+ +E +KA+ R +
Sbjct: 550 KDLEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINSENRKANSVRNAV 609
Query: 194 REDFDPV-EIARSYEKGGAACLSILTDEKYFKGS 226
++F PV + AR Y++ G + ++ DE Y +GS
Sbjct: 610 TQEFGPVPDTARYYKQHGIRWV-VIGDENYGEGS 642
>pdb|1ACO|A Chain A, Crystal Structure Of Aconitase With Transaconitate Bound
pdb|1FGH|A Chain A, Complex With 4-Hydroxy-Trans-Aconitate
pdb|8ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 134 KDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGIL 193
KD+E Q+ + + + A P F G L + + A+ +E +KA+ R +
Sbjct: 550 KDLEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINSENRKANSVRNAV 609
Query: 194 REDFDPV-EIARSYEKGGAACLSILTDEKYFKGS 226
++F PV + AR Y++ G + ++ DE Y +GS
Sbjct: 610 TQEFGPVPDTARYYKQHGIRWV-VIGDENYGEGS 642
>pdb|1NIS|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
pdb|1NIT|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
Length = 754
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 134 KDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGIL 193
KD+E Q+ + + + A P F G L + + A+ +E +KA+ R +
Sbjct: 550 KDLEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINSENRKANSVRNAV 609
Query: 194 REDFDPV-EIARSYEKGGAACLSILTDEKYFKGS 226
++F PV + AR Y++ G + ++ DE Y +GS
Sbjct: 610 TQEFGPVPDTARYYKQHGIRWV-VIGDENYGEGS 642
>pdb|1B0M|A Chain A, Aconitase R644q:fluorocitrate Complex
Length = 753
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 134 KDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGIL 193
KD+E Q+ + + + A P F G L + + A+ E +KA+ R +
Sbjct: 549 KDLEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENRKANSVRNAV 608
Query: 194 REDFDPV-EIARSYEKGGAACLSILTDEKYFKGSFENLEAV 233
++F PV + AR Y++ G + ++ DE Y +GS + A+
Sbjct: 609 TQEFGPVPDTARYYKQHGIRWV-VIGDENYGEGSSQEHSAL 648
>pdb|2J04|A Chain A, The Tau60-Tau91 Subcomplex Of Yeast Transcription Factor
Iiic
pdb|2J04|C Chain C, The Tau60-Tau91 Subcomplex Of Yeast Transcription Factor
Iiic
Length = 588
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 86 NEVAASQGIKIRRRPPTGPPLHYVGPFQFRIQNEGNTPRNILEEIVWHKDVEVTQLKQRR 145
NE Q IR+ P ++ R+ + G+ ++ + IVW++DV V L
Sbjct: 148 NEDGELQFFSIRKNSENTPEFYFES--SIRLSDAGS--KDWVTHIVWYEDVLVAALSNNS 203
Query: 146 PLSMLKNALDNAPPAR 161
SM +A + P +R
Sbjct: 204 VFSMTVSASSHQPVSR 219
>pdb|2NV1|A Chain A, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|B Chain B, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|C Chain C, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|D Chain D, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|E Chain E, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|F Chain F, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
Length = 305
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 363 GLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGK 395
G+ TP D A + + G V VG I K D+P K
Sbjct: 217 GVATPADAALMMQLGADGVFVGSGIFKSDNPAK 249
>pdb|2NV2|A Chain A, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|C Chain C, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|E Chain E, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|G Chain G, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|I Chain I, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|K Chain K, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|M Chain M, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|O Chain O, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|Q Chain Q, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|S Chain S, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|U Chain U, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|W Chain W, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
Length = 294
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 362 SGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGK 395
G+ TP D A + + G V VG I K D+P K
Sbjct: 213 GGVATPADAALMMQLGADGVFVGSGIFKSDNPAK 246
>pdb|5ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|6ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|7ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 134 KDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGIL 193
KD+E Q+ + + + A P F G L + + A+ E +KA+ R +
Sbjct: 550 KDLEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENRKANSVRNAV 609
Query: 194 REDFDPV-EIARSYEKGGAACLSILTDEKYFKGS 226
++F PV + AR Y++ G + ++ DE Y +GS
Sbjct: 610 TQEFGPVPDTARYYKQHGIRWV-VIGDENYGEGS 642
>pdb|2V1L|A Chain A, Structure Of The Conserved Hypothetical Protein Vc1805
From Pathogenicity Island Vpi-2 Of Vibrio Cholerae O1
Biovar Eltor Str. N16961 Shares Structural Homology With
The Human P32 Protein
Length = 148
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLE 231
F PVEIA S G C+ +TD Y F LE
Sbjct: 57 FHPVEIALSQSSDGQWCIEYITDFAYVGNHFPELE 91
>pdb|1JDI|A Chain A, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1JDI|B Chain B, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1JDI|C Chain C, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1JDI|D Chain D, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1JDI|E Chain E, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1JDI|F Chain F, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
Length = 231
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 59 GSATISSVMEDAETALKAKEWEVGMLINEVAASQGIKIRRRPPTGPPLHYVGPFQFRIQN 118
G+ + M DAE EWE G +I E QGI + P G +H GPF +
Sbjct: 124 GTIPCTRKMTDAEIN-GEYEWETGNVIVETFEKQGIDAAQMP--GVLVHSHGPFAWGKNA 180
Query: 119 EGNTPRNILEEIVWHKDVEVTQLKQRRP 146
E I+ E V + + QL + P
Sbjct: 181 EDAVHNAIVLEEVAYMGIFCRQLAPQLP 208
>pdb|1K0W|A Chain A, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1K0W|B Chain B, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1K0W|C Chain C, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1K0W|D Chain D, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1K0W|E Chain E, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1K0W|F Chain F, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
Length = 231
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 59 GSATISSVMEDAETALKAKEWEVGMLINEVAASQGIKIRRRPPTGPPLHYVGPFQFRIQN 118
G+ + M DAE EWE G +I E QGI + P G +H GPF +
Sbjct: 124 GTIPCTRKMTDAEIN-GEYEWETGNVIVETFEKQGIDAAQMP--GVLVHSHGPFAWGKNA 180
Query: 119 EGNTPRNILEEIVWHKDVEVTQLKQRRP 146
E I+ E V + + QL + P
Sbjct: 181 EDAVHNAIVLEEVAYMGIFCRQLAPQLP 208
>pdb|1B0J|A Chain A, Crystal Structure Of Aconitase With Isocitrate
Length = 754
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 134 KDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGIL 193
KD+E Q+ + + + A P F G L + + A+ E +KA+ R +
Sbjct: 550 KDLEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENRKANSVRNAV 609
Query: 194 REDFDPV-EIARSYEKGGAACLSILTDEKYFKGS 226
++F PV + AR Y++ G + ++ DE Y +G+
Sbjct: 610 TQEFGPVPDTARYYKQHGIRWV-VIGDENYGEGA 642
>pdb|1C97|A Chain A, S642a:isocitrate Complex Of Aconitase
pdb|1B0K|A Chain A, S642a:fluorocitrate Complex Of Aconitase
Length = 753
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 134 KDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGIL 193
KD+E Q+ + + + A P F G L + + A+ E +KA+ R +
Sbjct: 549 KDLEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENRKANSVRNAV 608
Query: 194 REDFDPV-EIARSYEKGGAACLSILTDEKYFKGS 226
++F PV + AR Y++ G + ++ DE Y +G+
Sbjct: 609 TQEFGPVPDTARYYKQHGIRWV-VIGDENYGEGA 641
>pdb|1C96|A Chain A, S642a:citrate Complex Of Aconitase
Length = 753
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 134 KDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGIL 193
KD+E Q+ + + + A P F G L + + A+ E +KA+ R +
Sbjct: 549 KDLEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENRKANSVRNAV 608
Query: 194 REDFDPV-EIARSYEKGGAACLSILTDEKYFKGS 226
++F PV + AR Y++ G + ++ DE Y +G+
Sbjct: 609 TQEFGPVPDTARYYKQHGIRWV-VIGDENYGEGA 641
>pdb|2HTM|A Chain A, Crystal Structure Of Ttha0676 From Thermus Thermophilus
Hb8
pdb|2HTM|B Chain B, Crystal Structure Of Ttha0676 From Thermus Thermophilus
Hb8
pdb|2HTM|C Chain C, Crystal Structure Of Ttha0676 From Thermus Thermophilus
Hb8
pdb|2HTM|D Chain D, Crystal Structure Of Ttha0676 From Thermus Thermophilus
Hb8
Length = 268
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 358 VVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDP 393
VV ++GL P A V E G+ AVLV +I + DP
Sbjct: 181 VVVDAGLGLPSHAAEVMELGLDAVLVNTAIAEAQDP 216
>pdb|2ZBT|A Chain A, Crystal Structure Of Pyridoxine Biosynthesis Protein From
Thermus Thermophilus Hb8
pdb|2ZBT|B Chain B, Crystal Structure Of Pyridoxine Biosynthesis Protein From
Thermus Thermophilus Hb8
pdb|2ZBT|C Chain C, Crystal Structure Of Pyridoxine Biosynthesis Protein From
Thermus Thermophilus Hb8
pdb|2ZBT|D Chain D, Crystal Structure Of Pyridoxine Biosynthesis Protein From
Thermus Thermophilus Hb8
Length = 297
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 362 SGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGK 395
G+ TP D A + G+ V VG I K DP K
Sbjct: 216 GGIATPADAALMMHLGMDGVFVGSGIFKSGDPRK 249
>pdb|1N3S|A Chain A, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|B Chain B, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|C Chain C, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|D Chain D, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|E Chain E, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|F Chain F, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|G Chain G, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|H Chain H, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|I Chain I, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|J Chain J, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
Length = 221
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 328 RTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIA--YVQE 375
R E+DN K L+ G EI++ N+ + +S + TP IA YV E
Sbjct: 24 RPPVHEMDNETRKSLIAGHMTEIMQLLNLDLADDSLMETPHRIAKMYVDE 73
>pdb|1N3T|F Chain F, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|G Chain G, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|H Chain H, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|I Chain I, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|J Chain J, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|K Chain K, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|L Chain L, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|M Chain M, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|N Chain N, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|O Chain O, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|A Chain A, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|B Chain B, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|C Chain C, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|D Chain D, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|E Chain E, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
Length = 221
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 328 RTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIA--YVQE 375
R E+DN K L+ G EI++ N+ + +S + TP IA YV E
Sbjct: 24 RPPVHEMDNETRKSLIAGHMTEIMQLLNLDLADDSLMETPHRIAKMYVDE 73
>pdb|1A8R|A Chain A, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|B Chain B, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|C Chain C, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|D Chain D, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|E Chain E, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|F Chain F, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|G Chain G, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|H Chain H, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|I Chain I, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|J Chain J, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|K Chain K, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|L Chain L, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|M Chain M, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|N Chain N, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|O Chain O, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1N3R|A Chain A, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|B Chain B, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|C Chain C, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|D Chain D, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|E Chain E, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|F Chain F, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|G Chain G, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|H Chain H, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|I Chain I, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|J Chain J, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|K Chain K, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|L Chain L, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|M Chain M, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|N Chain N, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|O Chain O, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
Length = 221
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 328 RTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIA--YVQE 375
R E+DN K L+ G EI++ N+ + +S + TP IA YV E
Sbjct: 24 RPPVHEMDNETRKSLIAGHMTEIMQLLNLDLADDSLMETPHRIAKMYVDE 73
>pdb|1GTP|A Chain A, Gtp Cyclohydrolase I
pdb|1GTP|B Chain B, Gtp Cyclohydrolase I
pdb|1GTP|C Chain C, Gtp Cyclohydrolase I
pdb|1GTP|D Chain D, Gtp Cyclohydrolase I
pdb|1GTP|E Chain E, Gtp Cyclohydrolase I
pdb|1GTP|F Chain F, Gtp Cyclohydrolase I
pdb|1GTP|G Chain G, Gtp Cyclohydrolase I
pdb|1GTP|H Chain H, Gtp Cyclohydrolase I
pdb|1GTP|I Chain I, Gtp Cyclohydrolase I
pdb|1GTP|J Chain J, Gtp Cyclohydrolase I
pdb|1GTP|K Chain K, Gtp Cyclohydrolase I
pdb|1GTP|L Chain L, Gtp Cyclohydrolase I
pdb|1GTP|M Chain M, Gtp Cyclohydrolase I
pdb|1GTP|N Chain N, Gtp Cyclohydrolase I
pdb|1GTP|O Chain O, Gtp Cyclohydrolase I
pdb|1GTP|P Chain P, Gtp Cyclohydrolase I
pdb|1GTP|Q Chain Q, Gtp Cyclohydrolase I
pdb|1GTP|R Chain R, Gtp Cyclohydrolase I
pdb|1GTP|S Chain S, Gtp Cyclohydrolase I
pdb|1GTP|T Chain T, Gtp Cyclohydrolase I
pdb|1FBX|A Chain A, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|B Chain B, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|C Chain C, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|D Chain D, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|E Chain E, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|F Chain F, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|G Chain G, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|H Chain H, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|I Chain I, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|J Chain J, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|K Chain K, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|L Chain L, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|M Chain M, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|N Chain N, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|O Chain O, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
Length = 221
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 328 RTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIA--YVQE 375
R E+DN K L+ G EI++ N+ + +S + TP IA YV E
Sbjct: 24 RPPVHEMDNETRKSLIAGHMTEIMQLLNLDLADDSLMETPHRIAKMYVDE 73
>pdb|1A9C|A Chain A, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|B Chain B, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|C Chain C, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|D Chain D, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|E Chain E, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|F Chain F, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|G Chain G, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|H Chain H, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|I Chain I, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|J Chain J, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|K Chain K, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|L Chain L, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|M Chain M, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|N Chain N, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|O Chain O, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
Length = 221
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 328 RTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIA--YVQE 375
R E+DN K L+ G EI++ N+ + +S + TP IA YV E
Sbjct: 24 RPPVHEMDNETRKSLIAGHMTEIMQLLNLDLADDSLMETPHRIAKMYVDE 73
>pdb|1WV2|A Chain A, Crystal Structure Of Thiamine Biosynthesis Protein From
Pseudomonas Aeruginosa
pdb|1WV2|B Chain B, Crystal Structure Of Thiamine Biosynthesis Protein From
Pseudomonas Aeruginosa
Length = 265
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 350 IIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDP 393
I+ + + V+ ++G+ T D A E G +AVL+ +I DP
Sbjct: 182 ILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDP 225
>pdb|3LU0|C Chain C, Molecular Model Of Escherichia Coli Core Rna Polymerase
Length = 1342
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 360 GESGLFTPDDIAYVQEAGVKAVLVGESIV---KQDDPGKGITG 399
GES LF+ D + Y+ + + V VG S++ + DD + + G
Sbjct: 640 GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMG 682
>pdb|3IYD|C Chain C, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
pdb|4IGC|C Chain C, X-ray Crystal Structure Of Escherichia Coli Sigma70
Holoenzyme
pdb|4IGC|H Chain H, X-ray Crystal Structure Of Escherichia Coli Sigma70
Holoenzyme
Length = 1342
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 360 GESGLFTPDDIAYVQEAGVKAVLVGESIV---KQDDPGKGITG 399
GES LF+ D + Y+ + + V VG S++ + DD + + G
Sbjct: 640 GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMG 682
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,378,097
Number of Sequences: 62578
Number of extensions: 448510
Number of successful extensions: 1153
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1039
Number of HSP's gapped (non-prelim): 67
length of query: 407
length of database: 14,973,337
effective HSP length: 101
effective length of query: 306
effective length of database: 8,652,959
effective search space: 2647805454
effective search space used: 2647805454
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)