Query 015424
Match_columns 407
No_of_seqs 290 out of 1607
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 06:11:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015424.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015424hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02460 indole-3-glycerol-pho 100.0 2.4E-97 5E-102 738.6 32.8 336 57-405 3-338 (338)
2 KOG4201 Anthranilate synthase 100.0 1.7E-77 3.7E-82 560.4 20.6 279 105-407 2-289 (289)
3 COG0134 TrpC Indole-3-glycerol 100.0 3.2E-76 7E-81 567.5 25.8 253 127-401 1-253 (254)
4 PF00218 IGPS: Indole-3-glycer 100.0 4.5E-74 9.8E-79 555.0 24.5 254 127-400 1-254 (254)
5 PRK13957 indole-3-glycerol-pho 100.0 1.2E-68 2.6E-73 514.9 30.2 245 125-401 3-247 (247)
6 PRK13802 bifunctional indole-3 100.0 1.4E-67 3E-72 567.0 31.2 259 124-403 1-259 (695)
7 PRK09427 bifunctional indole-3 100.0 1.6E-67 3.4E-72 545.0 29.0 254 124-403 4-257 (454)
8 PRK00278 trpC indole-3-glycero 100.0 3.2E-62 6.9E-67 473.4 32.3 258 123-402 1-258 (260)
9 cd00331 IGPS Indole-3-glycerol 100.0 9.9E-43 2.1E-47 326.0 26.6 209 175-400 9-217 (217)
10 PRK01130 N-acetylmannosamine-6 99.9 1.6E-24 3.5E-29 203.8 19.7 201 178-402 6-220 (221)
11 cd04729 NanE N-acetylmannosami 99.9 8.2E-24 1.8E-28 198.9 18.6 195 178-396 10-218 (219)
12 PF04131 NanE: Putative N-acet 99.9 7.7E-24 1.7E-28 196.7 16.3 179 199-401 1-190 (192)
13 COG3010 NanE Putative N-acetyl 99.9 8.6E-23 1.9E-27 191.2 18.5 200 178-402 16-227 (229)
14 cd04727 pdxS PdxS is a subunit 99.8 3.6E-19 7.9E-24 174.1 19.9 187 200-402 18-243 (283)
15 TIGR00007 phosphoribosylformim 99.8 2.8E-19 6.1E-24 168.6 18.4 176 197-393 28-227 (230)
16 PRK04302 triosephosphate isome 99.8 2.1E-18 4.5E-23 163.4 17.1 207 177-402 4-220 (223)
17 TIGR00343 pyridoxal 5'-phospha 99.8 9.3E-18 2E-22 164.4 18.5 187 200-402 20-246 (287)
18 PRK00748 1-(5-phosphoribosyl)- 99.8 1.9E-17 4.2E-22 156.0 19.1 180 196-393 29-229 (233)
19 cd00958 DhnA Class I fructose- 99.7 3.7E-17 8E-22 154.9 15.3 183 194-402 18-232 (235)
20 PRK04180 pyridoxal biosynthesi 99.7 2.8E-17 6.1E-22 161.4 13.9 188 200-402 27-252 (293)
21 cd04732 HisA HisA. Phosphorib 99.7 7.4E-15 1.6E-19 138.3 20.5 181 196-394 28-229 (234)
22 COG0106 HisA Phosphoribosylfor 99.6 1.5E-13 3.3E-18 132.3 19.5 179 196-393 30-230 (241)
23 PRK13585 1-(5-phosphoribosyl)- 99.6 1.9E-13 4E-18 129.9 19.3 185 197-400 32-238 (241)
24 PRK13125 trpA tryptophan synth 99.6 1.1E-13 2.3E-18 133.2 17.3 146 227-389 63-219 (244)
25 cd04726 KGPDC_HPS 3-Keto-L-gul 99.5 3.5E-13 7.7E-18 124.1 18.0 182 198-400 14-202 (202)
26 PRK02083 imidazole glycerol ph 99.5 5.6E-13 1.2E-17 128.3 19.4 188 196-402 29-245 (253)
27 TIGR03128 RuMP_HxlA 3-hexulose 99.5 5.9E-13 1.3E-17 123.5 18.1 184 198-402 13-204 (206)
28 cd04723 HisA_HisF Phosphoribos 99.5 1.5E-12 3.2E-17 124.7 21.3 183 193-396 31-230 (233)
29 PRK14024 phosphoribosyl isomer 99.5 1.5E-12 3.3E-17 125.0 20.3 183 198-400 33-238 (241)
30 cd04731 HisF The cyclase subun 99.5 1.5E-12 3.3E-17 124.1 19.9 188 196-402 26-241 (243)
31 PRK13587 1-(5-phosphoribosyl)- 99.5 1.2E-12 2.5E-17 125.8 18.7 174 197-389 31-226 (234)
32 PRK01033 imidazole glycerol ph 99.5 4E-12 8.7E-17 123.4 18.2 175 197-390 30-232 (258)
33 TIGR00735 hisF imidazoleglycer 99.4 8.3E-12 1.8E-16 120.6 19.7 188 196-402 29-247 (254)
34 PLN02446 (5-phosphoribosyl)-5- 99.4 1.1E-11 2.3E-16 121.4 20.3 179 197-396 43-252 (262)
35 PRK13586 1-(5-phosphoribosyl)- 99.4 8.2E-12 1.8E-16 120.0 18.5 174 198-391 31-225 (232)
36 PRK14114 1-(5-phosphoribosyl)- 99.4 1.5E-11 3.2E-16 118.9 20.1 186 196-398 29-237 (241)
37 TIGR03572 WbuZ glycosyl amidat 99.4 1.9E-11 4E-16 115.9 20.2 173 196-387 29-230 (232)
38 PRK00043 thiE thiamine-phospha 99.4 1.1E-11 2.5E-16 114.5 16.9 178 197-402 21-206 (212)
39 PF00977 His_biosynth: Histidi 99.4 1.2E-12 2.6E-17 124.9 10.5 180 195-391 27-227 (229)
40 KOG1606 Stationary phase-induc 99.4 9.6E-13 2.1E-17 124.6 9.6 192 200-402 31-256 (296)
41 PRK09140 2-dehydro-3-deoxy-6-p 99.4 2E-11 4.4E-16 115.3 17.9 185 179-402 12-201 (206)
42 TIGR00734 hisAF_rel hisA/hisF 99.4 1.4E-11 3.1E-16 117.3 16.6 177 196-391 35-220 (221)
43 cd00452 KDPG_aldolase KDPG and 99.4 2.4E-11 5.2E-16 112.5 17.6 161 197-389 16-176 (190)
44 cd04722 TIM_phosphate_binding 99.4 2.1E-11 4.5E-16 108.2 16.0 170 197-385 12-200 (200)
45 cd00564 TMP_TenI Thiamine mono 99.4 5.3E-11 1.2E-15 107.4 18.4 176 197-401 12-195 (196)
46 COG0352 ThiE Thiamine monophos 99.4 1.3E-11 2.7E-16 117.5 14.0 173 200-402 24-204 (211)
47 TIGR00693 thiE thiamine-phosph 99.4 3.4E-11 7.3E-16 110.8 16.5 174 198-400 14-196 (196)
48 TIGR01919 hisA-trpF 1-(5-phosp 99.3 1E-10 2.3E-15 113.0 19.9 179 197-395 31-236 (243)
49 PRK04128 1-(5-phosphoribosyl)- 99.3 1.2E-10 2.6E-15 111.6 18.0 177 197-398 30-225 (228)
50 TIGR01163 rpe ribulose-phospha 99.3 4.2E-10 9.1E-15 104.0 20.0 190 198-400 12-209 (210)
51 COG0214 SNZ1 Pyridoxine biosyn 99.3 2.1E-11 4.5E-16 117.0 9.9 192 199-401 29-254 (296)
52 cd04728 ThiG Thiazole synthase 99.3 1.8E-10 3.9E-15 111.5 16.3 186 197-401 20-221 (248)
53 PRK02615 thiamine-phosphate py 99.3 4.6E-11 1E-15 121.1 12.8 174 198-402 158-340 (347)
54 PLN02334 ribulose-phosphate 3- 99.2 7.9E-10 1.7E-14 105.2 19.7 199 187-402 11-220 (229)
55 PRK00208 thiG thiazole synthas 99.2 3E-10 6.5E-15 110.1 16.4 187 197-401 21-221 (250)
56 PLN02591 tryptophan synthase 99.2 7.7E-10 1.7E-14 107.7 18.8 147 226-389 66-223 (250)
57 TIGR02129 hisA_euk phosphoribo 99.2 4.9E-10 1.1E-14 109.3 16.9 168 198-389 38-237 (253)
58 PRK07455 keto-hydroxyglutarate 99.2 9.8E-10 2.1E-14 102.3 18.1 172 178-390 13-186 (187)
59 PRK05581 ribulose-phosphate 3- 99.2 2.6E-09 5.7E-14 99.6 20.6 192 198-402 17-216 (220)
60 PRK03512 thiamine-phosphate py 99.2 2.9E-10 6.4E-15 107.7 13.7 172 201-402 23-204 (211)
61 PRK12290 thiE thiamine-phospha 99.2 1.1E-10 2.4E-15 121.0 11.5 181 200-402 220-410 (437)
62 PRK06512 thiamine-phosphate py 99.2 3.5E-10 7.7E-15 108.0 13.0 171 198-402 27-210 (221)
63 PLN02617 imidazole glycerol ph 99.2 2.1E-09 4.6E-14 114.6 20.2 193 191-402 261-530 (538)
64 cd00429 RPE Ribulose-5-phospha 99.2 3.4E-09 7.3E-14 97.7 19.0 190 198-400 13-210 (211)
65 PRK06552 keto-hydroxyglutarate 99.1 3.6E-09 7.9E-14 100.7 17.4 174 197-401 25-206 (213)
66 TIGR00262 trpA tryptophan synt 99.1 7.3E-09 1.6E-13 101.0 19.2 174 199-389 26-232 (256)
67 PRK07695 transcriptional regul 99.1 6.8E-09 1.5E-13 96.7 17.9 173 198-402 16-195 (201)
68 PRK07028 bifunctional hexulose 99.1 6.3E-09 1.4E-13 107.7 18.7 184 198-402 17-208 (430)
69 cd04724 Tryptophan_synthase_al 99.1 4.1E-09 8.9E-14 101.6 15.9 176 199-391 16-222 (242)
70 PLN02898 HMP-P kinase/thiamin- 99.0 3.4E-09 7.3E-14 111.7 12.7 173 198-402 308-493 (502)
71 cd04730 NPD_like 2-Nitropropan 99.0 1.9E-08 4.1E-13 94.9 16.3 171 200-393 16-194 (236)
72 CHL00200 trpA tryptophan synth 98.9 6.8E-08 1.5E-12 94.8 19.2 147 226-388 79-235 (263)
73 TIGR01949 AroFGH_arch predicte 98.9 6.7E-08 1.4E-12 93.7 18.0 175 195-402 34-245 (258)
74 PRK08883 ribulose-phosphate 3- 98.9 1.9E-07 4.2E-12 89.3 20.8 192 198-402 13-213 (220)
75 PRK13111 trpA tryptophan synth 98.9 2.9E-08 6.3E-13 97.1 15.4 152 226-392 76-236 (258)
76 PRK07226 fructose-bisphosphate 98.9 1E-07 2.2E-12 93.1 19.1 175 195-402 37-249 (267)
77 PRK13307 bifunctional formalde 98.9 2.5E-07 5.5E-12 95.5 21.8 185 198-402 186-376 (391)
78 PF02581 TMP-TENI: Thiamine mo 98.9 8.8E-09 1.9E-13 94.6 8.9 160 198-387 13-180 (180)
79 PLN02274 inosine-5'-monophosph 98.9 1.6E-07 3.4E-12 99.8 19.4 186 193-392 178-388 (505)
80 TIGR03151 enACPred_II putative 98.8 8.7E-08 1.9E-12 95.7 14.9 167 200-392 25-198 (307)
81 PTZ00170 D-ribulose-5-phosphat 98.8 5.7E-07 1.2E-11 86.2 19.9 191 198-402 20-219 (228)
82 cd02809 alpha_hydroxyacid_oxid 98.8 2E-07 4.4E-12 92.3 16.8 167 199-390 83-262 (299)
83 TIGR01303 IMP_DH_rel_1 IMP deh 98.8 2.2E-07 4.8E-12 98.1 17.8 182 193-391 159-364 (475)
84 PRK07807 inosine 5-monophospha 98.8 1.7E-07 3.8E-12 98.9 17.0 186 193-391 161-366 (479)
85 PRK08005 epimerase; Validated 98.8 1.2E-06 2.6E-11 83.5 20.6 195 187-401 4-208 (210)
86 PRK11840 bifunctional sulfur c 98.8 4E-07 8.7E-12 91.6 17.9 204 177-400 74-294 (326)
87 PRK06843 inosine 5-monophospha 98.8 9.5E-08 2.1E-12 98.9 13.8 128 253-390 157-291 (404)
88 PRK09517 multifunctional thiam 98.8 6.7E-08 1.5E-12 106.9 13.0 177 198-402 20-212 (755)
89 COG0107 HisF Imidazoleglycerol 98.7 4.2E-07 9.2E-12 87.6 16.6 190 193-401 26-246 (256)
90 PRK08999 hypothetical protein; 98.7 5.4E-08 1.2E-12 96.0 10.7 199 145-388 106-312 (312)
91 PRK06806 fructose-bisphosphate 98.7 1.7E-06 3.7E-11 85.7 20.6 150 238-402 73-246 (281)
92 PRK08745 ribulose-phosphate 3- 98.7 3.3E-06 7.1E-11 81.2 21.3 201 187-402 7-217 (223)
93 TIGR01302 IMP_dehydrog inosine 98.7 6.5E-07 1.4E-11 93.7 17.5 184 193-392 157-364 (450)
94 COG0269 SgbH 3-hexulose-6-phos 98.7 1.2E-06 2.6E-11 83.7 17.5 159 227-402 44-210 (217)
95 TIGR01182 eda Entner-Doudoroff 98.6 1.4E-06 3E-11 82.8 15.9 176 178-392 9-184 (204)
96 PRK05567 inosine 5'-monophosph 98.6 3.9E-06 8.4E-11 88.7 19.4 187 194-391 162-367 (486)
97 COG0036 Rpe Pentose-5-phosphat 98.6 1.1E-05 2.3E-10 77.6 20.4 200 186-402 6-215 (220)
98 cd00381 IMPDH IMPDH: The catal 98.6 2.3E-06 5.1E-11 86.1 16.9 130 253-392 98-234 (325)
99 cd04739 DHOD_like Dihydroorota 98.6 1.2E-06 2.7E-11 88.0 14.6 162 177-394 100-277 (325)
100 PRK08091 ribulose-phosphate 3- 98.6 1.1E-05 2.3E-10 78.0 20.1 196 188-401 17-224 (228)
101 PRK05458 guanosine 5'-monophos 98.5 1.5E-06 3.3E-11 87.8 14.1 126 253-391 101-237 (326)
102 PRK07565 dihydroorotate dehydr 98.5 1.9E-06 4.2E-11 86.6 14.8 160 177-393 102-278 (334)
103 PRK08649 inosine 5-monophospha 98.5 8.1E-06 1.8E-10 83.8 19.6 213 160-391 60-292 (368)
104 PF01081 Aldolase: KDPG and KH 98.5 3.5E-06 7.6E-11 79.6 15.0 175 178-391 9-183 (196)
105 PRK09722 allulose-6-phosphate 98.5 2.1E-05 4.5E-10 76.0 20.6 201 186-402 5-217 (229)
106 TIGR01859 fruc_bis_ald_ fructo 98.5 1.3E-05 2.9E-10 79.4 19.5 148 238-401 72-245 (282)
107 COG0159 TrpA Tryptophan syntha 98.5 7.5E-06 1.6E-10 80.6 17.3 149 226-390 81-239 (265)
108 TIGR01304 IMP_DH_rel_2 IMP deh 98.5 1.9E-06 4.2E-11 88.4 13.4 136 251-392 144-292 (369)
109 PTZ00314 inosine-5'-monophosph 98.5 5.4E-06 1.2E-10 88.0 17.0 185 194-392 175-381 (495)
110 PRK05718 keto-hydroxyglutarate 98.5 1.3E-05 2.7E-10 76.6 17.8 176 178-392 16-191 (212)
111 cd04740 DHOD_1B_like Dihydroor 98.4 2.3E-05 5E-10 77.0 17.8 163 228-399 76-275 (296)
112 PRK04169 geranylgeranylglycery 98.4 1.2E-05 2.5E-10 78.0 15.2 170 198-402 20-229 (232)
113 PRK14057 epimerase; Provisiona 98.4 5.6E-05 1.2E-09 74.2 19.9 197 187-401 23-238 (254)
114 PRK06852 aldolase; Validated 98.4 3.4E-05 7.4E-10 77.4 18.6 182 192-400 54-283 (304)
115 PRK07315 fructose-bisphosphate 98.3 4.2E-05 9E-10 76.4 19.1 187 199-402 31-248 (293)
116 PRK06015 keto-hydroxyglutarate 98.3 4.5E-05 9.8E-10 72.4 18.1 163 198-391 17-179 (201)
117 cd02810 DHOD_DHPD_FMN Dihydroo 98.3 1.5E-05 3.3E-10 77.8 15.4 154 238-398 97-287 (289)
118 COG0149 TpiA Triosephosphate i 98.3 8.9E-06 1.9E-10 79.5 13.6 170 226-402 44-249 (251)
119 TIGR01769 GGGP geranylgeranylg 98.3 7.2E-06 1.6E-10 78.0 11.6 162 198-384 12-205 (205)
120 KOG3111 D-ribulose-5-phosphate 98.3 8.9E-05 1.9E-09 70.2 18.2 196 186-401 7-214 (224)
121 cd02812 PcrB_like PcrB_like pr 98.2 1.1E-05 2.4E-10 77.5 11.6 162 198-390 13-210 (219)
122 COG1830 FbaB DhnA-type fructos 98.2 8.4E-05 1.8E-09 73.1 17.8 178 187-401 37-254 (265)
123 cd00945 Aldolase_Class_I Class 98.2 4.2E-05 9.1E-10 69.0 14.8 162 197-384 13-201 (201)
124 PRK07114 keto-hydroxyglutarate 98.2 9.6E-05 2.1E-09 71.2 17.8 176 178-391 16-195 (222)
125 PF00290 Trp_syntA: Tryptophan 98.2 1.2E-05 2.7E-10 78.9 11.8 159 227-400 75-247 (259)
126 PF03060 NMO: Nitronate monoox 98.2 1.6E-05 3.4E-10 80.1 12.9 125 251-392 103-227 (330)
127 TIGR01768 GGGP-family geranylg 98.2 4E-05 8.6E-10 73.9 13.9 162 198-391 15-215 (223)
128 TIGR01037 pyrD_sub1_fam dihydr 98.1 0.00014 2.9E-09 71.9 17.5 153 238-399 89-278 (300)
129 CHL00162 thiG thiamin biosynth 98.1 0.00018 3.9E-09 70.6 17.9 184 197-400 27-234 (267)
130 PRK07259 dihydroorotate dehydr 98.1 0.00011 2.4E-09 72.5 16.8 153 238-399 90-278 (301)
131 PF00834 Ribul_P_3_epim: Ribul 98.1 3.2E-05 7E-10 73.2 12.4 181 196-390 11-200 (201)
132 PRK05848 nicotinate-nucleotide 98.1 1.9E-05 4.2E-10 78.1 10.9 95 276-391 167-264 (273)
133 PRK08227 autoinducer 2 aldolas 98.1 0.00023 5.1E-09 70.2 17.5 123 253-401 99-243 (264)
134 cd02801 DUS_like_FMN Dihydrour 98.1 0.00015 3.2E-09 68.1 15.4 148 238-400 53-229 (231)
135 TIGR00737 nifR3_yhdG putative 98.1 0.00017 3.8E-09 72.0 16.5 149 239-402 62-240 (319)
136 cd02922 FCB2_FMN Flavocytochro 98.1 0.00011 2.5E-09 74.8 15.4 173 200-392 84-308 (344)
137 cd02940 DHPD_FMN Dihydropyrimi 98.0 0.00031 6.8E-09 69.7 17.8 152 239-397 99-295 (299)
138 PRK13306 ulaD 3-keto-L-gulonat 98.0 0.00021 4.6E-09 68.2 15.5 187 198-402 17-209 (216)
139 PRK10415 tRNA-dihydrouridine s 98.0 0.00061 1.3E-08 68.6 19.0 148 240-402 65-242 (321)
140 cd00405 PRAI Phosphoribosylant 98.0 0.00069 1.5E-08 63.3 17.8 176 201-401 10-200 (203)
141 PF04481 DUF561: Protein of un 97.9 0.00033 7.1E-09 67.4 15.2 174 198-398 28-228 (242)
142 TIGR00736 nifR3_rel_arch TIM-b 97.9 0.00022 4.7E-09 69.1 13.9 135 239-390 67-226 (231)
143 PRK05437 isopentenyl pyrophosp 97.9 0.00013 2.9E-09 74.4 13.1 165 176-390 120-296 (352)
144 PRK07428 nicotinate-nucleotide 97.9 8.8E-05 1.9E-09 74.0 10.9 93 278-391 183-278 (288)
145 COG0800 Eda 2-keto-3-deoxy-6-p 97.9 0.00048 1E-08 66.0 15.3 163 198-391 26-188 (211)
146 PRK06801 hypothetical protein; 97.9 0.0017 3.7E-08 64.8 19.7 140 238-390 73-239 (286)
147 PRK09250 fructose-bisphosphate 97.9 0.00062 1.3E-08 69.6 16.5 185 195-394 89-328 (348)
148 PRK13813 orotidine 5'-phosphat 97.9 0.00075 1.6E-08 63.4 15.9 153 225-402 42-210 (215)
149 cd04737 LOX_like_FMN L-Lactate 97.9 0.00048 1E-08 70.5 15.6 170 200-390 92-311 (351)
150 PRK11572 copper homeostasis pr 97.8 0.00081 1.7E-08 65.9 16.4 162 201-383 12-197 (248)
151 cd04736 MDH_FMN Mandelate dehy 97.8 8.3E-05 1.8E-09 76.3 10.1 101 226-390 224-324 (361)
152 PF01791 DeoC: DeoC/LacD famil 97.8 7.1E-05 1.5E-09 71.5 8.2 170 198-389 20-235 (236)
153 PLN02535 glycolate oxidase 97.8 0.00043 9.4E-09 71.2 14.3 170 199-390 91-313 (364)
154 TIGR00419 tim triosephosphate 97.8 0.00044 9.5E-09 65.9 13.1 153 226-390 40-204 (205)
155 cd04743 NPD_PKS 2-Nitropropane 97.8 0.00076 1.6E-08 68.3 15.3 179 198-392 15-210 (320)
156 PLN02495 oxidoreductase, actin 97.8 0.00063 1.4E-08 70.5 15.0 177 177-394 114-310 (385)
157 cd01568 QPRTase_NadC Quinolina 97.7 0.00023 4.9E-09 70.1 10.6 89 280-391 170-261 (269)
158 cd02911 arch_FMN Archeal FMN-b 97.7 0.0033 7E-08 60.8 18.0 128 239-386 72-222 (233)
159 PRK05286 dihydroorotate dehydr 97.7 0.00092 2E-08 67.9 14.8 213 180-399 53-334 (344)
160 TIGR00078 nadC nicotinate-nucl 97.7 0.00028 6.1E-09 69.5 10.6 87 280-391 167-256 (265)
161 cd02811 IDI-2_FMN Isopentenyl- 97.7 0.00035 7.6E-09 70.5 11.3 165 177-391 113-291 (326)
162 PRK08072 nicotinate-nucleotide 97.7 0.00037 7.9E-09 69.2 10.9 84 280-387 177-263 (277)
163 cd01573 modD_like ModD; Quinol 97.6 0.0003 6.6E-09 69.5 10.2 80 288-389 183-262 (272)
164 PF05690 ThiG: Thiazole biosyn 97.6 0.00032 7E-09 68.2 10.0 184 198-400 20-220 (247)
165 TIGR02151 IPP_isom_2 isopenten 97.6 0.0016 3.5E-08 65.9 15.5 183 199-390 72-289 (333)
166 cd01572 QPRTase Quinolinate ph 97.6 0.00037 8E-09 68.8 10.5 77 288-388 182-258 (268)
167 PRK11815 tRNA-dihydrouridine s 97.6 0.002 4.3E-08 65.3 15.7 154 238-402 63-251 (333)
168 TIGR01334 modD putative molybd 97.6 0.002 4.3E-08 64.2 15.3 90 276-386 174-265 (277)
169 PRK08508 biotin synthase; Prov 97.6 0.01 2.2E-07 58.5 20.1 198 198-402 44-268 (279)
170 PF03437 BtpA: BtpA family; I 97.6 0.0035 7.6E-08 61.7 16.6 178 200-402 32-250 (254)
171 COG0434 SgcQ Predicted TIM-bar 97.6 0.004 8.6E-08 60.9 16.3 167 200-391 37-239 (263)
172 PRK11197 lldD L-lactate dehydr 97.6 0.00031 6.7E-09 72.7 9.2 103 226-390 233-335 (381)
173 TIGR00259 thylakoid_BtpA membr 97.5 0.0074 1.6E-07 59.5 18.0 175 201-402 32-250 (257)
174 PRK05742 nicotinate-nucleotide 97.5 0.00069 1.5E-08 67.3 11.0 79 288-390 189-267 (277)
175 PRK02083 imidazole glycerol ph 97.5 0.00045 9.7E-09 66.7 9.4 96 292-402 26-121 (253)
176 TIGR00735 hisF imidazoleglycer 97.5 0.0004 8.6E-09 67.4 9.0 93 295-402 29-121 (254)
177 cd02803 OYE_like_FMN_family Ol 97.5 0.0019 4.2E-08 64.1 14.0 135 255-398 148-325 (327)
178 PF01070 FMN_dh: FMN-dependent 97.5 0.00044 9.6E-09 70.8 9.5 104 225-390 212-315 (356)
179 PRK08318 dihydropyrimidine deh 97.5 0.0049 1.1E-07 63.9 17.4 151 239-394 99-293 (420)
180 PLN02979 glycolate oxidase 97.5 0.00045 9.7E-09 71.1 9.4 102 226-389 211-312 (366)
181 PRK00230 orotidine 5'-phosphat 97.5 0.0094 2E-07 57.3 18.0 174 198-402 13-225 (230)
182 cd04738 DHOD_2_like Dihydrooro 97.5 0.0021 4.6E-08 64.7 13.7 132 261-398 160-324 (327)
183 cd04731 HisF The cyclase subun 97.5 0.00053 1.2E-08 65.6 9.0 92 296-402 27-118 (243)
184 COG2070 Dioxygenases related t 97.5 0.0011 2.4E-08 67.5 11.6 114 278-401 117-232 (336)
185 PRK00042 tpiA triosephosphate 97.5 0.00092 2E-08 65.5 10.6 140 257-399 82-247 (250)
186 TIGR01305 GMP_reduct_1 guanosi 97.5 0.0023 4.9E-08 65.3 13.6 126 253-388 111-245 (343)
187 PLN02429 triosephosphate isome 97.4 0.001 2.2E-08 67.3 10.9 141 257-399 143-307 (315)
188 cd00959 DeoC 2-deoxyribose-5-p 97.4 0.0022 4.8E-08 60.2 12.6 159 197-381 17-200 (203)
189 PRK07998 gatY putative fructos 97.4 0.014 3E-07 58.4 18.7 177 200-390 32-235 (283)
190 PRK07107 inosine 5-monophospha 97.4 0.0038 8.2E-08 66.8 15.7 191 193-389 176-386 (502)
191 PRK08185 hypothetical protein; 97.4 0.027 5.8E-07 56.3 20.6 141 238-389 67-233 (283)
192 PF01729 QRPTase_C: Quinolinat 97.4 0.0005 1.1E-08 63.6 7.9 94 277-391 66-162 (169)
193 TIGR01302 IMP_dehydrog inosine 97.4 0.0019 4.2E-08 67.9 13.1 118 197-316 223-356 (450)
194 PLN02493 probable peroxisomal 97.4 0.00064 1.4E-08 70.0 9.3 102 226-389 212-313 (367)
195 COG1411 Uncharacterized protei 97.4 0.0011 2.3E-08 63.3 9.9 187 188-398 27-224 (229)
196 cd00311 TIM Triosephosphate is 97.4 0.001 2.2E-08 64.9 10.0 160 226-393 40-237 (242)
197 cd04741 DHOD_1A_like Dihydroor 97.4 0.012 2.7E-07 58.5 17.8 132 261-398 119-287 (294)
198 PTZ00333 triosephosphate isome 97.4 0.0014 2.9E-08 64.5 10.8 159 226-397 45-248 (255)
199 PRK10550 tRNA-dihydrouridine s 97.4 0.006 1.3E-07 61.4 15.6 148 239-399 62-239 (312)
200 COG1646 Predicted phosphate-bi 97.4 0.0025 5.3E-08 62.0 12.2 143 249-392 29-228 (240)
201 PF03932 CutC: CutC family; I 97.4 0.0037 8E-08 59.5 13.3 159 202-382 12-197 (201)
202 TIGR02708 L_lactate_ox L-lacta 97.4 0.0036 7.8E-08 64.6 14.0 164 200-390 149-318 (367)
203 TIGR01036 pyrD_sub2 dihydrooro 97.4 0.00086 1.9E-08 68.1 9.4 158 197-398 151-332 (335)
204 KOG4175 Tryptophan synthase al 97.3 0.0026 5.7E-08 60.9 11.0 150 226-389 82-240 (268)
205 PTZ00314 inosine-5'-monophosph 97.3 0.0034 7.3E-08 67.0 13.3 119 198-318 241-375 (495)
206 PRK08385 nicotinate-nucleotide 97.3 0.0026 5.6E-08 63.3 11.2 89 281-388 173-263 (278)
207 PRK06096 molybdenum transport 97.2 0.006 1.3E-07 60.9 13.7 93 276-390 175-269 (284)
208 TIGR01303 IMP_DH_rel_1 IMP deh 97.2 0.0047 1E-07 65.6 13.6 118 197-316 224-357 (475)
209 PF01680 SOR_SNZ: SOR/SNZ fami 97.2 0.0011 2.4E-08 62.2 7.7 120 178-317 16-146 (208)
210 COG2022 ThiG Uncharacterized e 97.2 0.024 5.1E-07 55.4 17.0 181 197-400 27-227 (262)
211 KOG2335 tRNA-dihydrouridine sy 97.2 0.008 1.7E-07 61.6 14.4 144 238-394 72-243 (358)
212 TIGR00742 yjbN tRNA dihydrouri 97.2 0.017 3.7E-07 58.3 16.8 153 239-402 54-241 (318)
213 COG0042 tRNA-dihydrouridine sy 97.2 0.017 3.6E-07 58.6 16.6 146 239-397 66-241 (323)
214 CHL00162 thiG thiamin biosynth 97.2 0.0031 6.8E-08 62.1 10.9 75 197-273 146-223 (267)
215 PRK05567 inosine 5'-monophosph 97.2 0.0064 1.4E-07 64.5 13.8 122 193-316 223-360 (486)
216 PF00478 IMPDH: IMP dehydrogen 97.2 0.0051 1.1E-07 63.2 12.5 177 199-391 50-247 (352)
217 PRK14567 triosephosphate isome 97.2 0.0028 6.1E-08 62.3 10.1 132 257-398 81-245 (253)
218 PRK00748 1-(5-phosphoribosyl)- 97.2 0.0019 4E-08 61.1 8.6 92 295-401 29-120 (233)
219 COG0167 PyrD Dihydroorotate de 97.2 0.0056 1.2E-07 61.9 12.5 160 198-397 110-284 (310)
220 PRK13585 1-(5-phosphoribosyl)- 97.1 0.0041 8.9E-08 59.2 10.9 87 196-283 148-238 (241)
221 PLN02716 nicotinate-nucleotide 97.1 0.0044 9.6E-08 62.5 11.4 95 278-387 187-293 (308)
222 TIGR01306 GMP_reduct_2 guanosi 97.1 0.011 2.4E-07 60.1 14.2 172 200-391 48-234 (321)
223 PLN02561 triosephosphate isome 97.1 0.0037 8.1E-08 61.4 10.4 160 226-390 45-239 (253)
224 TIGR03569 NeuB_NnaB N-acetylne 97.1 0.0069 1.5E-07 61.7 12.6 94 272-388 73-174 (329)
225 PRK14905 triosephosphate isome 97.1 0.0039 8.4E-08 64.1 10.9 143 257-402 91-260 (355)
226 PF09370 TIM-br_sig_trns: TIM- 97.1 0.0058 1.3E-07 60.5 11.5 185 200-389 25-251 (268)
227 TIGR03572 WbuZ glycosyl amidat 97.1 0.0031 6.8E-08 59.9 9.3 94 294-402 28-121 (232)
228 PRK06843 inosine 5-monophospha 97.1 0.018 4E-07 60.2 15.6 143 161-318 129-287 (404)
229 TIGR01361 DAHP_synth_Bsub phos 97.1 0.028 6E-07 55.3 16.1 190 175-390 24-235 (260)
230 TIGR01304 IMP_DH_rel_2 IMP deh 97.0 0.015 3.2E-07 60.2 14.6 119 197-318 142-286 (369)
231 PRK06543 nicotinate-nucleotide 97.0 0.0056 1.2E-07 61.1 11.1 86 277-386 179-267 (281)
232 PRK06978 nicotinate-nucleotide 97.0 0.0064 1.4E-07 61.0 11.4 89 278-390 193-283 (294)
233 PRK06559 nicotinate-nucleotide 97.0 0.0052 1.1E-07 61.6 10.7 88 277-389 183-273 (290)
234 TIGR00736 nifR3_rel_arch TIM-b 97.0 0.003 6.4E-08 61.3 8.6 76 196-274 147-226 (231)
235 PRK13305 sgbH 3-keto-L-gulonat 97.0 0.0058 1.3E-07 58.7 10.5 187 199-402 18-209 (218)
236 cd03332 LMO_FMN L-Lactate 2-mo 97.0 0.0039 8.4E-08 64.7 9.9 171 198-389 152-342 (383)
237 TIGR03586 PseI pseudaminic aci 97.0 0.0095 2.1E-07 60.6 12.4 94 272-388 74-173 (327)
238 TIGR02814 pfaD_fam PfaD family 97.0 0.012 2.6E-07 62.2 13.3 104 280-401 159-272 (444)
239 cd02922 FCB2_FMN Flavocytochro 97.0 0.027 5.9E-07 57.6 15.5 93 225-320 200-304 (344)
240 cd04742 NPD_FabD 2-Nitropropan 96.9 0.0043 9.4E-08 65.0 9.9 111 279-401 153-267 (418)
241 PRK06106 nicotinate-nucleotide 96.9 0.0071 1.5E-07 60.4 10.8 86 278-387 181-269 (281)
242 COG3142 CutC Uncharacterized p 96.9 0.025 5.5E-07 55.0 14.2 159 202-380 13-196 (241)
243 PRK07896 nicotinate-nucleotide 96.9 0.0073 1.6E-07 60.5 10.9 91 278-389 187-279 (289)
244 PRK07709 fructose-bisphosphate 96.9 0.15 3.3E-06 51.0 20.2 139 239-389 77-238 (285)
245 PRK12738 kbaY tagatose-bisphos 96.9 0.09 1.9E-06 52.7 18.6 179 199-389 31-237 (286)
246 PRK09016 quinolinate phosphori 96.9 0.0072 1.6E-07 60.7 10.8 78 288-390 208-285 (296)
247 PF01207 Dus: Dihydrouridine s 96.9 0.014 3E-07 58.5 12.9 144 239-396 53-225 (309)
248 PRK05096 guanosine 5'-monophos 96.9 0.011 2.5E-07 60.3 12.2 127 254-390 113-248 (346)
249 TIGR00007 phosphoribosylformim 96.9 0.0065 1.4E-07 57.5 9.9 78 196-274 144-224 (230)
250 PRK14565 triosephosphate isome 96.9 0.011 2.4E-07 57.7 11.3 132 257-399 81-233 (237)
251 PRK08649 inosine 5-monophospha 96.9 0.024 5.1E-07 58.6 14.3 120 197-319 141-288 (368)
252 TIGR00126 deoC deoxyribose-pho 96.9 0.016 3.5E-07 55.5 12.2 159 198-381 19-201 (211)
253 PRK13397 3-deoxy-7-phosphohept 96.9 0.072 1.6E-06 52.5 16.9 172 196-386 28-221 (250)
254 cd02809 alpha_hydroxyacid_oxid 96.8 0.035 7.6E-07 55.2 14.9 118 200-320 132-260 (299)
255 PRK13398 3-deoxy-7-phosphohept 96.8 0.081 1.8E-06 52.3 17.2 174 197-388 41-235 (266)
256 PF01645 Glu_synthase: Conserv 96.8 0.0062 1.4E-07 62.9 9.5 110 271-388 184-307 (368)
257 TIGR01037 pyrD_sub1_fam dihydr 96.8 0.0062 1.3E-07 60.2 9.1 78 198-276 170-271 (300)
258 PRK06256 biotin synthase; Vali 96.8 0.14 3.1E-06 51.3 18.9 199 197-401 91-317 (336)
259 cd04732 HisA HisA. Phosphorib 96.8 0.0077 1.7E-07 56.8 9.4 79 195-274 144-225 (234)
260 cd00381 IMPDH IMPDH: The catal 96.8 0.027 5.9E-07 57.0 13.8 115 198-318 94-228 (325)
261 PRK08673 3-deoxy-7-phosphohept 96.8 0.075 1.6E-06 54.4 16.9 188 175-388 92-301 (335)
262 PLN02389 biotin synthase 96.8 0.099 2.1E-06 54.2 18.0 196 198-400 120-346 (379)
263 PRK00507 deoxyribose-phosphate 96.7 0.042 9E-07 53.0 14.2 162 198-386 23-208 (221)
264 PF01180 DHO_dh: Dihydroorotat 96.7 0.0093 2E-07 58.9 10.0 155 239-398 96-288 (295)
265 PRK10415 tRNA-dihydrouridine s 96.7 0.012 2.7E-07 59.3 10.9 86 191-277 143-233 (321)
266 PRK13523 NADPH dehydrogenase N 96.7 0.025 5.4E-07 57.6 13.0 51 355-405 275-326 (337)
267 cd02932 OYE_YqiM_FMN Old yello 96.7 0.043 9.4E-07 55.3 14.6 44 355-398 290-334 (336)
268 TIGR00167 cbbA ketose-bisphosp 96.7 0.25 5.3E-06 49.6 19.6 177 199-388 31-240 (288)
269 PRK02506 dihydroorotate dehydr 96.7 0.047 1E-06 54.8 14.6 134 259-394 116-281 (310)
270 PLN02274 inosine-5'-monophosph 96.7 0.031 6.8E-07 59.9 14.0 121 196-318 246-382 (505)
271 cd02808 GltS_FMN Glutamate syn 96.7 0.017 3.7E-07 59.9 11.6 164 179-390 147-320 (392)
272 cd04728 ThiG Thiazole synthase 96.6 0.01 2.2E-07 58.2 9.1 74 198-273 133-209 (248)
273 cd00947 TBP_aldolase_IIB Tagat 96.6 0.26 5.6E-06 49.2 19.2 140 238-389 68-231 (276)
274 PRK04128 1-(5-phosphoribosyl)- 96.6 0.0088 1.9E-07 57.6 8.5 47 334-388 60-106 (228)
275 cd04727 pdxS PdxS is a subunit 96.6 0.006 1.3E-07 60.8 7.4 110 201-320 123-273 (283)
276 PRK01033 imidazole glycerol ph 96.6 0.0099 2.2E-07 58.0 8.8 92 296-402 30-121 (258)
277 PRK00208 thiG thiazole synthas 96.6 0.012 2.6E-07 57.8 9.1 74 198-273 133-209 (250)
278 TIGR01740 pyrF orotidine 5'-ph 96.5 0.043 9.4E-07 51.9 12.4 151 222-400 34-212 (213)
279 PRK12595 bifunctional 3-deoxy- 96.5 0.21 4.6E-06 51.5 18.3 177 192-387 127-325 (360)
280 PRK07259 dihydroorotate dehydr 96.5 0.015 3.3E-07 57.5 9.5 79 198-277 170-272 (301)
281 PRK12858 tagatose 1,6-diphosph 96.5 0.015 3.3E-07 59.4 9.6 136 249-393 107-285 (340)
282 PLN02535 glycolate oxidase 96.4 0.035 7.6E-07 57.3 12.0 92 226-320 211-311 (364)
283 PRK12737 gatY tagatose-bisphos 96.4 0.36 7.7E-06 48.4 18.7 141 238-389 73-237 (284)
284 TIGR01858 tag_bisphos_ald clas 96.4 0.38 8.2E-06 48.2 18.8 141 238-389 71-235 (282)
285 cd04735 OYE_like_4_FMN Old yel 96.4 0.016 3.4E-07 59.1 9.2 45 355-399 284-328 (353)
286 cd04733 OYE_like_2_FMN Old yel 96.4 0.07 1.5E-06 53.9 13.6 45 355-399 292-337 (338)
287 cd02911 arch_FMN Archeal FMN-b 96.4 0.017 3.6E-07 55.9 8.7 71 197-270 152-222 (233)
288 cd04740 DHOD_1B_like Dihydroor 96.4 0.021 4.5E-07 56.2 9.6 78 198-276 167-268 (296)
289 PRK08610 fructose-bisphosphate 96.3 0.49 1.1E-05 47.5 19.3 178 199-388 31-237 (286)
290 TIGR00737 nifR3_yhdG putative 96.3 0.032 7E-07 55.8 11.0 80 197-277 147-231 (319)
291 PRK09195 gatY tagatose-bisphos 96.3 0.51 1.1E-05 47.3 19.3 140 238-388 73-236 (284)
292 PRK09196 fructose-1,6-bisphosp 96.3 0.27 5.9E-06 50.6 17.6 141 239-389 75-282 (347)
293 cd02940 DHPD_FMN Dihydropyrimi 96.3 0.019 4.1E-07 57.1 9.2 75 198-273 181-286 (299)
294 TIGR01769 GGGP geranylgeranylg 96.3 0.022 4.8E-07 54.4 9.0 69 198-267 135-204 (205)
295 PRK09427 bifunctional indole-3 96.3 0.17 3.6E-06 53.9 16.2 171 176-381 159-333 (454)
296 PF04476 DUF556: Protein of un 96.3 0.086 1.9E-06 51.5 12.9 126 184-316 53-208 (235)
297 PRK13399 fructose-1,6-bisphosp 96.2 0.4 8.7E-06 49.4 18.3 141 239-389 75-282 (347)
298 cd04734 OYE_like_3_FMN Old yel 96.2 0.09 2E-06 53.5 13.6 45 355-399 285-330 (343)
299 COG0157 NadC Nicotinate-nucleo 96.2 0.036 7.8E-07 55.3 10.4 90 276-387 173-265 (280)
300 PRK14024 phosphoribosyl isomer 96.2 0.028 6E-07 54.3 9.4 93 190-283 139-238 (241)
301 PRK07084 fructose-bisphosphate 96.2 0.61 1.3E-05 47.6 19.1 141 239-389 85-273 (321)
302 PF00121 TIM: Triosephosphate 96.2 0.014 3E-07 57.0 7.1 162 226-394 40-241 (244)
303 PRK07565 dihydroorotate dehydr 96.2 0.024 5.3E-07 57.2 9.1 73 198-273 178-273 (334)
304 PLN02826 dihydroorotate dehydr 96.2 0.096 2.1E-06 54.9 13.7 39 354-392 340-379 (409)
305 PRK12857 fructose-1,6-bisphosp 96.2 0.56 1.2E-05 47.0 18.5 142 238-390 73-238 (284)
306 PF05690 ThiG: Thiazole biosyn 96.1 0.015 3.3E-07 56.7 7.2 73 198-272 133-208 (247)
307 PRK05458 guanosine 5'-monophos 96.1 0.007 1.5E-07 61.5 5.0 72 200-272 151-234 (326)
308 PRK13587 1-(5-phosphoribosyl)- 96.1 0.03 6.5E-07 54.1 8.9 92 296-402 31-123 (234)
309 PRK07807 inosine 5-monophospha 96.0 0.092 2E-06 56.1 13.0 118 197-316 226-359 (479)
310 COG0502 BioB Biotin synthase a 96.0 0.49 1.1E-05 48.6 17.6 196 198-400 88-311 (335)
311 PRK10550 tRNA-dihydrouridine s 96.0 0.03 6.6E-07 56.4 8.8 79 198-277 149-233 (312)
312 PRK01130 N-acetylmannosamine-6 96.0 0.065 1.4E-06 50.6 10.6 73 202-275 131-209 (221)
313 PRK15492 triosephosphate isome 96.0 0.049 1.1E-06 53.8 10.0 132 257-393 90-250 (260)
314 TIGR01521 FruBisAldo_II_B fruc 96.0 0.68 1.5E-05 47.8 18.4 141 239-389 73-280 (347)
315 TIGR00433 bioB biotin syntheta 96.0 1.2 2.5E-05 43.6 19.5 191 198-395 66-284 (296)
316 cd00958 DhnA Class I fructose- 95.9 0.075 1.6E-06 50.5 10.9 102 177-284 123-230 (235)
317 TIGR02151 IPP_isom_2 isopenten 95.9 0.075 1.6E-06 53.9 11.4 142 165-317 105-284 (333)
318 PRK15452 putative protease; Pr 95.9 0.16 3.4E-06 53.9 13.8 111 250-387 12-144 (443)
319 TIGR02708 L_lactate_ox L-lacta 95.9 0.074 1.6E-06 55.0 11.1 92 226-320 216-316 (367)
320 PRK05835 fructose-bisphosphate 95.9 1 2.3E-05 45.7 19.0 140 239-389 74-260 (307)
321 PF04131 NanE: Putative N-acet 95.8 0.085 1.8E-06 50.1 10.5 90 177-283 93-189 (192)
322 cd02801 DUS_like_FMN Dihydrour 95.8 0.038 8.3E-07 51.8 8.2 80 197-277 138-222 (231)
323 PRK02227 hypothetical protein; 95.8 0.2 4.2E-06 49.1 13.2 150 184-345 53-232 (238)
324 COG2022 ThiG Uncharacterized e 95.8 0.058 1.2E-06 52.8 9.3 75 196-272 138-215 (262)
325 PRK04169 geranylgeranylglycery 95.8 0.049 1.1E-06 53.0 9.0 78 196-276 136-221 (232)
326 PRK11840 bifunctional sulfur c 95.8 0.071 1.5E-06 54.3 10.3 73 198-272 207-282 (326)
327 cd04738 DHOD_2_like Dihydrooro 95.7 0.027 5.9E-07 56.8 7.2 74 198-272 217-313 (327)
328 PF01884 PcrB: PcrB family; I 95.7 0.0063 1.4E-07 59.1 2.5 169 198-399 20-226 (230)
329 cd04737 LOX_like_FMN L-Lactate 95.7 0.1 2.2E-06 53.7 11.4 92 226-320 209-309 (351)
330 TIGR00343 pyridoxal 5'-phospha 95.7 0.1 2.3E-06 52.2 10.9 86 225-320 184-276 (287)
331 PRK15108 biotin synthase; Prov 95.7 1.3 2.8E-05 45.3 19.1 199 197-401 76-305 (345)
332 PRK13396 3-deoxy-7-phosphohept 95.7 0.83 1.8E-05 47.2 17.7 186 177-388 102-310 (352)
333 cd02812 PcrB_like PcrB_like pr 95.6 0.089 1.9E-06 50.8 9.9 74 198-275 136-211 (219)
334 cd02933 OYE_like_FMN Old yello 95.6 0.29 6.3E-06 49.8 13.9 75 309-399 254-329 (338)
335 cd00408 DHDPS-like Dihydrodipi 95.5 1.5 3.2E-05 42.8 18.4 167 200-392 21-209 (281)
336 cd02810 DHOD_DHPD_FMN Dihydroo 95.5 0.033 7.1E-07 54.5 6.8 79 198-277 177-282 (289)
337 PRK07028 bifunctional hexulose 95.5 0.35 7.7E-06 50.4 14.9 181 198-388 119-328 (430)
338 TIGR03151 enACPred_II putative 95.5 0.05 1.1E-06 54.7 8.2 93 160-272 98-194 (307)
339 PF03102 NeuB: NeuB family; I 95.5 0.096 2.1E-06 51.2 9.6 90 271-383 52-145 (241)
340 PRK05286 dihydroorotate dehydr 95.5 0.032 7E-07 56.8 6.6 74 198-272 226-322 (344)
341 PF01729 QRPTase_C: Quinolinat 95.4 0.065 1.4E-06 49.6 8.0 91 222-317 62-156 (169)
342 cd04729 NanE N-acetylmannosami 95.4 0.088 1.9E-06 49.7 9.0 77 198-276 132-214 (219)
343 PRK08318 dihydropyrimidine deh 95.4 0.11 2.3E-06 54.1 10.2 75 198-273 181-287 (420)
344 cd04739 DHOD_like Dihydroorota 95.3 0.063 1.4E-06 54.2 8.1 75 198-273 176-271 (325)
345 cd03332 LMO_FMN L-Lactate 2-mo 95.3 0.17 3.8E-06 52.6 11.3 92 226-320 241-341 (383)
346 TIGR01306 GMP_reduct_2 guanosi 95.3 0.34 7.3E-06 49.4 13.1 117 201-320 97-230 (321)
347 TIGR01305 GMP_reduct_1 guanosi 95.2 0.21 4.5E-06 51.3 11.4 114 201-316 110-241 (343)
348 COG5564 Predicted TIM-barrel e 95.2 0.048 1E-06 53.0 6.5 146 239-391 87-259 (276)
349 PF01116 F_bP_aldolase: Fructo 95.2 0.64 1.4E-05 46.6 14.6 142 238-389 72-240 (287)
350 TIGR02313 HpaI-NOT-DapA 2,4-di 95.1 2.6 5.6E-05 42.0 18.9 170 199-393 23-215 (294)
351 cd00951 KDGDH 5-dehydro-4-deox 95.1 2.6 5.5E-05 41.8 18.7 169 199-391 23-211 (289)
352 cd00946 FBP_aldolase_IIA Class 95.1 1.9 4.1E-05 44.5 18.0 146 238-389 86-280 (345)
353 TIGR03128 RuMP_HxlA 3-hexulose 95.0 0.26 5.6E-06 45.7 10.6 87 198-285 114-203 (206)
354 TIGR01334 modD putative molybd 94.9 0.44 9.6E-06 47.6 12.6 141 158-316 107-263 (277)
355 TIGR00674 dapA dihydrodipicoli 94.9 2.8 6E-05 41.3 18.2 165 200-390 22-208 (285)
356 PF00478 IMPDH: IMP dehydrogen 94.9 0.35 7.6E-06 49.9 12.1 130 175-316 95-240 (352)
357 cd00452 KDPG_aldolase KDPG and 94.8 0.55 1.2E-05 43.5 12.3 114 240-384 7-124 (190)
358 PF00977 His_biosynth: Histidi 94.8 0.059 1.3E-06 51.7 6.0 97 292-403 25-121 (229)
359 cd04726 KGPDC_HPS 3-Keto-L-gul 94.8 0.24 5.1E-06 45.6 9.8 82 197-281 114-199 (202)
360 cd04723 HisA_HisF Phosphoribos 94.8 0.19 4E-06 48.4 9.4 95 176-274 127-224 (233)
361 TIGR02129 hisA_euk phosphoribo 94.7 0.12 2.5E-06 51.1 7.8 82 298-402 41-126 (253)
362 TIGR00742 yjbN tRNA dihydrouri 94.7 0.15 3.3E-06 51.6 8.8 79 198-277 142-232 (318)
363 COG0826 Collagenase and relate 94.7 0.99 2.1E-05 46.5 14.7 114 250-387 15-147 (347)
364 PRK03620 5-dehydro-4-deoxygluc 94.6 4.5 9.8E-05 40.4 19.1 169 200-393 31-220 (303)
365 PRK14114 1-(5-phosphoribosyl)- 94.6 0.2 4.4E-06 48.8 9.1 119 161-283 109-239 (241)
366 PRK07188 nicotinate phosphorib 94.6 0.26 5.6E-06 50.8 10.3 112 276-391 189-317 (352)
367 cd02930 DCR_FMN 2,4-dienoyl-Co 94.6 0.27 5.9E-06 50.0 10.5 45 355-399 276-321 (353)
368 PRK04180 pyridoxal biosynthesi 94.5 0.29 6.4E-06 49.2 10.3 87 224-320 189-282 (293)
369 TIGR01949 AroFGH_arch predicte 94.5 0.6 1.3E-05 45.4 12.3 78 203-286 162-245 (258)
370 COG0042 tRNA-dihydrouridine sy 94.5 0.16 3.4E-06 51.6 8.5 80 197-277 152-237 (323)
371 cd04725 OMP_decarboxylase_like 94.5 0.78 1.7E-05 43.6 12.7 145 225-399 37-215 (216)
372 cd00331 IGPS Indole-3-glycerol 94.4 0.24 5.3E-06 46.5 9.1 75 203-277 134-210 (217)
373 TIGR02311 HpaI 2,4-dihydroxyhe 94.4 2.1 4.5E-05 41.9 15.8 173 201-385 24-232 (249)
374 cd02803 OYE_like_FMN_family Ol 94.4 0.16 3.4E-06 50.5 8.2 80 197-277 228-320 (327)
375 PRK00043 thiE thiamine-phospha 94.3 0.26 5.7E-06 45.5 8.9 79 198-282 113-202 (212)
376 PRK10605 N-ethylmaleimide redu 94.3 2.1 4.5E-05 44.1 16.2 143 200-399 162-336 (362)
377 TIGR03249 KdgD 5-dehydro-4-deo 94.2 5.8 0.00013 39.4 18.8 167 200-389 29-214 (296)
378 cd01571 NAPRTase_B Nicotinate 94.2 0.4 8.6E-06 48.3 10.6 90 289-391 185-280 (302)
379 PRK05283 deoxyribose-phosphate 94.2 0.52 1.1E-05 46.7 11.1 168 198-389 27-227 (257)
380 PRK09197 fructose-bisphosphate 94.2 3.3 7.1E-05 42.9 17.1 148 238-389 91-284 (350)
381 PF00701 DHDPS: Dihydrodipicol 94.1 2.8 6E-05 41.2 16.2 165 199-389 24-210 (289)
382 cd00954 NAL N-Acetylneuraminic 94.1 6.5 0.00014 38.8 19.7 164 200-389 24-211 (288)
383 PRK15447 putative protease; Pr 94.1 1.1 2.4E-05 44.9 13.5 108 253-388 19-142 (301)
384 PRK05096 guanosine 5'-monophos 94.1 0.058 1.3E-06 55.3 4.3 92 179-270 141-244 (346)
385 cd00564 TMP_TenI Thiamine mono 94.1 0.36 7.7E-06 43.4 9.1 77 198-277 104-187 (196)
386 PF02310 B12-binding: B12 bind 94.0 1 2.2E-05 37.8 11.3 98 273-386 13-113 (121)
387 KOG2550 IMP dehydrogenase/GMP 94.0 0.34 7.4E-06 51.0 9.7 131 249-389 251-388 (503)
388 PF01884 PcrB: PcrB family; I 93.9 0.23 5E-06 48.4 7.9 90 196-285 135-228 (230)
389 PRK13397 3-deoxy-7-phosphohept 93.9 0.74 1.6E-05 45.4 11.5 89 273-385 64-157 (250)
390 KOG0538 Glycolate oxidase [Ene 93.9 0.33 7.1E-06 49.4 9.1 91 226-320 211-311 (363)
391 cd00952 CHBPH_aldolase Trans-o 93.8 5.9 0.00013 39.8 18.1 168 198-392 30-222 (309)
392 PRK11815 tRNA-dihydrouridine s 93.8 0.26 5.7E-06 50.0 8.5 79 198-277 152-242 (333)
393 cd02808 GltS_FMN Glutamate syn 93.8 0.16 3.4E-06 52.8 7.0 72 198-272 226-318 (392)
394 PRK08255 salicylyl-CoA 5-hydro 93.8 0.74 1.6E-05 51.7 12.7 155 198-400 552-734 (765)
395 PRK07896 nicotinate-nucleotide 93.8 0.63 1.4E-05 46.8 10.9 136 159-316 124-274 (289)
396 cd04730 NPD_like 2-Nitropropan 93.8 0.22 4.8E-06 46.9 7.4 72 201-273 113-190 (236)
397 PRK13523 NADPH dehydrogenase N 93.7 0.16 3.5E-06 51.7 6.9 79 198-277 228-314 (337)
398 COG2876 AroA 3-deoxy-D-arabino 93.7 0.18 3.8E-06 50.3 6.8 46 273-320 94-139 (286)
399 TIGR01361 DAHP_synth_Bsub phos 93.7 0.41 9E-06 47.1 9.4 88 274-385 75-167 (260)
400 TIGR01919 hisA-trpF 1-(5-phosp 93.7 0.13 2.7E-06 50.2 5.7 61 334-402 61-121 (243)
401 PRK06096 molybdenum transport 93.7 1.6 3.5E-05 43.8 13.6 141 158-316 108-264 (284)
402 PRK13586 1-(5-phosphoribosyl)- 93.6 0.4 8.6E-06 46.5 9.0 91 296-402 30-120 (232)
403 KOG0538 Glycolate oxidase [Ene 93.6 0.64 1.4E-05 47.4 10.5 169 200-388 137-311 (363)
404 PRK07107 inosine 5-monophospha 93.6 0.88 1.9E-05 49.0 12.4 116 198-316 242-381 (502)
405 TIGR00262 trpA tryptophan synt 93.6 0.36 7.9E-06 47.3 8.8 45 226-272 186-231 (256)
406 TIGR00693 thiE thiamine-phosph 93.5 1.8 3.9E-05 39.7 12.8 108 253-390 18-129 (196)
407 cd03174 DRE_TIM_metallolyase D 93.5 6.2 0.00013 37.6 16.9 117 196-316 18-166 (265)
408 PRK00278 trpC indole-3-glycero 93.5 0.38 8.2E-06 47.2 8.7 82 198-281 169-253 (260)
409 PRK10558 alpha-dehydro-beta-de 93.5 4.8 0.0001 39.6 16.4 173 201-385 31-238 (256)
410 cd00945 Aldolase_Class_I Class 93.5 0.78 1.7E-05 41.2 10.2 134 176-315 48-200 (201)
411 cd04747 OYE_like_5_FMN Old yel 93.4 1.3 2.9E-05 45.7 13.0 127 255-399 151-343 (361)
412 TIGR01520 FruBisAldo_II_A fruc 93.3 6.8 0.00015 40.7 17.7 147 238-389 98-292 (357)
413 PF01207 Dus: Dihydrouridine s 93.3 0.12 2.6E-06 51.9 5.0 81 196-277 137-222 (309)
414 cd08562 GDPD_EcUgpQ_like Glyce 93.3 3.4 7.3E-05 38.6 14.5 123 176-316 100-227 (229)
415 cd03319 L-Ala-DL-Glu_epimerase 93.3 1.6 3.5E-05 43.4 12.9 101 198-303 192-294 (316)
416 PRK10128 2-keto-3-deoxy-L-rham 93.3 9.4 0.0002 38.0 18.1 174 201-386 30-239 (267)
417 COG0329 DapA Dihydrodipicolina 93.2 10 0.00022 38.1 19.6 177 199-400 27-225 (299)
418 cd04736 MDH_FMN Mandelate dehy 93.2 0.27 5.9E-06 50.8 7.6 90 180-272 228-322 (361)
419 PRK03170 dihydrodipicolinate s 93.2 9.3 0.0002 37.6 18.4 163 200-388 25-209 (292)
420 cd03315 MLE_like Muconate lact 93.2 1.4 3E-05 42.7 12.1 126 162-301 117-244 (265)
421 COG0107 HisF Imidazoleglycerol 93.2 0.36 7.7E-06 47.4 7.8 94 294-402 28-121 (256)
422 PRK07428 nicotinate-nucleotide 93.2 0.79 1.7E-05 46.1 10.5 138 158-316 119-271 (288)
423 PF03060 NMO: Nitronate monoox 93.1 0.18 4E-06 50.9 6.1 94 159-272 124-223 (330)
424 PRK12595 bifunctional 3-deoxy- 93.1 0.58 1.3E-05 48.3 9.8 89 273-385 167-260 (360)
425 PRK08883 ribulose-phosphate 3- 93.1 0.39 8.4E-06 46.2 7.9 86 198-285 117-212 (220)
426 PRK07695 transcriptional regul 93.1 0.71 1.5E-05 43.0 9.5 71 202-274 107-183 (201)
427 COG1891 Uncharacterized protei 93.0 0.14 3.1E-06 48.4 4.7 131 184-317 53-209 (235)
428 cd06811 PLPDE_III_yhfX_like Ty 93.0 4.3 9.2E-05 42.0 15.9 173 200-390 67-262 (382)
429 PRK04147 N-acetylneuraminate l 92.9 11 0.00023 37.4 19.6 162 200-388 27-211 (293)
430 TIGR01036 pyrD_sub2 dihydrooro 92.9 0.24 5.2E-06 50.4 6.5 74 198-272 225-321 (335)
431 TIGR03239 GarL 2-dehydro-3-deo 92.9 8.8 0.00019 37.6 17.2 173 201-385 24-231 (249)
432 PRK13125 trpA tryptophan synth 92.9 0.78 1.7E-05 44.4 9.7 97 176-286 129-235 (244)
433 PLN02826 dihydroorotate dehydr 92.8 0.87 1.9E-05 47.8 10.6 74 198-272 277-374 (409)
434 cd02811 IDI-2_FMN Isopentenyl- 92.7 0.65 1.4E-05 47.0 9.4 72 200-272 192-288 (326)
435 COG2089 SpsE Sialic acid synth 92.7 1.4 2.9E-05 45.3 11.5 88 272-382 87-178 (347)
436 cd04724 Tryptophan_synthase_al 92.6 0.96 2.1E-05 43.8 10.0 74 197-272 139-219 (242)
437 TIGR01182 eda Entner-Doudoroff 92.6 2.1 4.5E-05 41.0 12.0 114 239-383 10-127 (204)
438 PF03437 BtpA: BtpA family; I 92.5 3.5 7.5E-05 40.8 13.9 117 163-285 127-253 (254)
439 COG0069 GltB Glutamate synthas 92.5 0.38 8.3E-06 51.5 7.6 110 271-388 284-407 (485)
440 PRK13396 3-deoxy-7-phosphohept 92.4 1.2 2.6E-05 46.0 10.9 91 272-386 149-244 (352)
441 CHL00200 trpA tryptophan synth 92.4 0.25 5.5E-06 48.8 5.8 43 228-272 192-235 (263)
442 COG0106 HisA Phosphoribosylfor 92.4 0.82 1.8E-05 45.0 9.1 91 297-403 32-123 (241)
443 PRK08385 nicotinate-nucleotide 92.3 2.6 5.7E-05 42.2 12.9 139 158-316 105-259 (278)
444 PRK05198 2-dehydro-3-deoxyphos 92.3 13 0.00029 37.1 17.5 165 198-384 25-229 (264)
445 KOG0623 Glutamine amidotransfe 92.3 1.7 3.7E-05 45.1 11.6 190 196-402 268-533 (541)
446 cd00003 PNPsynthase Pyridoxine 92.2 13 0.00027 36.7 17.2 182 196-389 20-216 (234)
447 cd04741 DHOD_1A_like Dihydroor 92.2 0.91 2E-05 45.2 9.6 45 227-272 230-276 (294)
448 PRK05848 nicotinate-nucleotide 92.2 1.2 2.5E-05 44.5 10.2 138 158-316 105-257 (273)
449 cd08556 GDPD Glycerophosphodie 92.2 6.2 0.00013 35.2 14.1 135 162-316 50-188 (189)
450 PF04309 G3P_antiterm: Glycero 92.1 0.99 2.1E-05 42.3 9.0 123 230-384 37-169 (175)
451 COG2070 Dioxygenases related t 92.1 0.29 6.2E-06 50.1 5.9 94 159-272 115-217 (336)
452 TIGR00284 dihydropteroate synt 91.9 7.9 0.00017 41.9 16.8 188 176-389 151-356 (499)
453 PRK04302 triosephosphate isome 91.9 0.81 1.8E-05 43.6 8.5 80 201-282 125-216 (223)
454 PF03740 PdxJ: Pyridoxal phosp 91.9 4.1 9E-05 40.1 13.4 177 196-389 21-219 (239)
455 COG0157 NadC Nicotinate-nucleo 91.9 0.69 1.5E-05 46.4 8.1 138 158-316 111-262 (280)
456 PRK05437 isopentenyl pyrophosp 91.9 0.94 2E-05 46.5 9.4 73 200-272 200-294 (352)
457 PRK14566 triosephosphate isome 91.8 1.9 4.2E-05 42.8 11.2 128 256-392 90-249 (260)
458 PRK08673 3-deoxy-7-phosphohept 91.8 1.1 2.3E-05 46.1 9.7 90 273-386 142-236 (335)
459 cd04735 OYE_like_4_FMN Old yel 91.8 0.16 3.4E-06 51.9 3.7 100 198-302 236-344 (353)
460 cd04722 TIM_phosphate_binding 91.8 2.2 4.8E-05 37.5 10.6 131 177-316 58-199 (200)
461 PRK13398 3-deoxy-7-phosphohept 91.7 1.1 2.4E-05 44.5 9.3 88 274-385 77-169 (266)
462 cd04734 OYE_like_3_FMN Old yel 91.7 0.72 1.6E-05 47.0 8.2 109 163-277 197-324 (343)
463 COG0284 PyrF Orotidine-5'-phos 91.6 6.9 0.00015 38.4 14.6 174 198-402 25-232 (240)
464 PRK07094 biotin synthase; Prov 91.6 16 0.00034 36.4 18.3 176 199-383 75-279 (323)
465 cd02931 ER_like_FMN Enoate red 91.6 0.75 1.6E-05 47.6 8.4 45 355-399 305-350 (382)
466 TIGR01362 KDO8P_synth 3-deoxy- 91.6 6.9 0.00015 39.0 14.6 145 218-384 48-221 (258)
467 PRK12457 2-dehydro-3-deoxyphos 91.6 16 0.00035 36.8 17.3 166 199-384 32-237 (281)
468 PLN02858 fructose-bisphosphate 91.5 12 0.00026 45.2 19.2 142 238-388 1168-1335(1378)
469 PRK04165 acetyl-CoA decarbonyl 91.5 2.3 5E-05 45.4 11.9 134 175-326 90-236 (450)
470 TIGR00259 thylakoid_BtpA membr 91.4 8.1 0.00018 38.4 15.0 107 175-286 138-254 (257)
471 PLN02591 tryptophan synthase 91.4 0.51 1.1E-05 46.4 6.7 44 228-272 179-222 (250)
472 TIGR01768 GGGP-family geranylg 91.3 0.5 1.1E-05 45.9 6.4 47 227-274 167-214 (223)
473 TIGR00734 hisAF_rel hisA/hisF 91.3 1.3 2.8E-05 42.5 9.1 90 178-273 124-218 (221)
474 cd00950 DHDPS Dihydrodipicolin 91.1 16 0.00035 35.7 18.9 162 200-387 24-207 (284)
475 cd00453 FTBP_aldolase_II Fruct 91.1 15 0.00032 38.1 16.9 148 238-389 84-277 (340)
476 TIGR02320 PEP_mutase phosphoen 91.1 4.3 9.3E-05 40.7 12.9 140 231-390 71-246 (285)
477 PRK09016 quinolinate phosphori 91.0 1.6 3.5E-05 44.1 9.9 133 158-316 132-280 (296)
478 cd00956 Transaldolase_FSA Tran 91.0 4 8.7E-05 39.0 12.1 125 178-318 53-187 (211)
479 cd00516 PRTase_typeII Phosphor 90.9 1 2.2E-05 44.1 8.2 85 291-390 187-273 (281)
480 PRK14057 epimerase; Provisiona 90.9 6.5 0.00014 39.0 13.7 115 197-315 85-220 (254)
481 cd08579 GDPD_memb_like Glycero 90.9 9.2 0.0002 35.8 14.3 132 162-316 84-218 (220)
482 PRK05718 keto-hydroxyglutarate 90.8 5.4 0.00012 38.3 12.8 121 231-383 10-134 (212)
483 PRK14040 oxaloacetate decarbox 90.7 8.5 0.00018 42.5 15.8 120 196-316 26-175 (593)
484 PRK09140 2-dehydro-3-deoxy-6-p 90.6 2.8 6.1E-05 39.9 10.7 101 201-316 74-179 (206)
485 cd02932 OYE_YqiM_FMN Old yello 90.6 0.77 1.7E-05 46.3 7.2 79 198-277 242-329 (336)
486 TIGR00683 nanA N-acetylneurami 90.6 19 0.00042 35.7 19.1 163 200-389 24-210 (290)
487 COG0274 DeoC Deoxyribose-phosp 90.5 4.6 9.9E-05 39.5 12.0 159 199-385 26-211 (228)
488 PRK06512 thiamine-phosphate py 90.4 5.9 0.00013 38.1 12.8 107 252-387 30-141 (221)
489 cd04733 OYE_like_2_FMN Old yel 90.3 0.91 2E-05 45.9 7.5 79 198-277 237-331 (338)
490 COG2185 Sbm Methylmalonyl-CoA 90.3 1.6 3.4E-05 39.8 8.1 86 280-382 32-120 (143)
491 COG4981 Enoyl reductase domain 90.2 2 4.3E-05 46.9 10.0 127 255-392 115-261 (717)
492 TIGR03239 GarL 2-dehydro-3-deo 90.2 3 6.4E-05 40.9 10.7 67 248-315 20-90 (249)
493 PLN02617 imidazole glycerol ph 90.0 3.1 6.8E-05 45.3 11.6 94 195-290 436-535 (538)
494 PRK08091 ribulose-phosphate 3- 89.9 7.9 0.00017 37.8 13.2 115 197-315 78-206 (228)
495 PLN02979 glycolate oxidase 89.8 2.4 5.2E-05 44.1 10.1 73 200-272 234-311 (366)
496 PRK06559 nicotinate-nucleotide 89.7 2.6 5.6E-05 42.6 10.0 134 158-316 120-269 (290)
497 cd00959 DeoC 2-deoxyribose-5-p 89.6 1.6 3.4E-05 41.0 8.0 112 201-315 73-202 (203)
498 TIGR00381 cdhD CO dehydrogenas 89.6 6.4 0.00014 41.3 12.9 128 175-304 110-257 (389)
499 TIGR02311 HpaI 2,4-dihydroxyhe 89.5 9.2 0.0002 37.4 13.5 68 247-315 19-90 (249)
500 cd02931 ER_like_FMN Enoate red 89.5 1.5 3.3E-05 45.3 8.5 79 198-277 253-344 (382)
No 1
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=100.00 E-value=2.4e-97 Score=738.57 Aligned_cols=336 Identities=84% Similarity=1.317 Sum_probs=314.2
Q ss_pred CCCcceeeccchhhhhHhhhhHhhhcchhhhhhhcCCeEEEeCCCCCCCcccccceeeeecCCCCCcccHHHHHHHHHHH
Q 015424 57 KDGSATISSVMEDAETALKAKEWEVGMLINEVAASQGIKIRRRPPTGPPLHYVGPFQFRIQNEGNTPRNILEEIVWHKDV 136 (407)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~irrr~~~~~~~~~~~~~~~~~~~~~~~p~~iLe~Iv~~K~~ 136 (407)
+++++.+ +++.|+.++++||+||++|+++++|||+|||||||+++.+.+++++|++++++++|+|||++|+|+|+.
T Consensus 3 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~irr~~~~~~~~~~~~~~~~~~~~~~~~~~~iLe~Iv~~k~~ 78 (338)
T PLN02460 3 KSGSALY----DDMFNALEVKEWEVGMSQNEIAASQGIRIRRRPPTGPPLHYVGPFQFRLQNEGNTPRNILEEIVWYKDV 78 (338)
T ss_pred ccchhhh----hhhcchhHHHHhhccccchhccccCCceEecCCCCCcccccccccccccccccccHhHHHHHHHHHHHH
Confidence 4555554 779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEE
Q 015424 137 EVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSI 216 (407)
Q Consensus 137 ev~~~k~~~pl~~l~~~~~~~~~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISV 216 (407)
||+++++++|+.+|++.+...|++++|.+||+......++++|||||||+|||+|+|++++||+++|+.|+++||+||||
T Consensus 79 eV~~~k~~~~l~~l~~~~~~~~~~r~f~~aL~~~~~~~g~~~vIAEvKrASPSkG~I~~~~dp~~iA~~Ye~~GA~aISV 158 (338)
T PLN02460 79 EVAQMKERKPLYLLKKALQNAPPARDFVGALRAAHKRTGQPGLIAEVKKASPSRGVLRENFDPVEIAQAYEKGGAACLSV 158 (338)
T ss_pred HHHHHHhcCCHHHHHHHHHhCCCCcCHHHHHHhhccccCCcceEeeeccCCCCCCccCCCCCHHHHHHHHHhCCCcEEEE
Confidence 99999999999999998888888999999998632112558999999999999999999999999999999999999999
Q ss_pred EecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeC
Q 015424 217 LTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH 296 (407)
Q Consensus 217 LTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVh 296 (407)
|||++||+||++||..||++++++||||||||+|+||||+|+.+|||+||||+++|++.+|.+|+++|++|||++|||||
T Consensus 159 LTd~~~F~Gs~e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GADAVLLIaaiL~~~~L~~l~~~A~~LGme~LVEVH 238 (338)
T PLN02460 159 LTDEKYFQGSFENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGADAILLIAAVLPDLDIKYMLKICKSLGMAALIEVH 238 (338)
T ss_pred ecCcCcCCCCHHHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCCCcHHHHHHhCCHHHHHHHHHHHHHcCCeEEEEeC
Confidence 99999999999999999985489999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHc
Q 015424 297 DEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEA 376 (407)
Q Consensus 297 t~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~ 376 (407)
|++|+++|+++.|+++|||||||| +||++|++++.+|++..++..+++.++++|+||||+|++|+.++.++
T Consensus 239 ~~~ElerAl~~~ga~iIGINNRdL---------~Tf~vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~ 309 (338)
T PLN02460 239 DEREMDRVLGIEGVELIGINNRSL---------ETFEVDISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNA 309 (338)
T ss_pred CHHHHHHHHhcCCCCEEEEeCCCC---------CcceECHHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHC
Confidence 999999999965899999999999 99999999999998843333454578999999999999999999999
Q ss_pred CCCEEEEcccccCCCChHHHHHhhhcCcc
Q 015424 377 GVKAVLVGESIVKQDDPGKGITGLFGKDI 405 (407)
Q Consensus 377 GadaVLVGeaLmk~~dp~~~i~~L~~~~~ 405 (407)
|+|||||||+||+++||++++++|++++|
T Consensus 310 GadAvLVGEsLMr~~dp~~~l~~L~~~~~ 338 (338)
T PLN02460 310 GVKAVLVGESLVKQDDPGKGIAGLFGKDI 338 (338)
T ss_pred CCCEEEECHHHhCCCCHHHHHHHHhCCCC
Confidence 99999999999999999999999999875
No 2
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-77 Score=560.35 Aligned_cols=279 Identities=58% Similarity=0.903 Sum_probs=266.5
Q ss_pred CcccccceeeeecCCCCCcccHHHHHHHHHHHHHHHHHhcCC---hHHHHHhhhc--CCCCccHHHHHHhhhhcCCCceE
Q 015424 105 PLHYVGPFQFRIQNEGNTPRNILEEIVWHKDVEVTQLKQRRP---LSMLKNALDN--APPARDFIGALMAANQRTGLPAL 179 (407)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~p~~iLe~Iv~~K~~ev~~~k~~~p---l~~l~~~~~~--~~~~~~f~~aL~~~~~~~~~~~v 179 (407)
|..+++++++++.+ |++|||+|.|+|..+|+++|+ .| +..|++.+.. +||.+||+.+|+.++ ..+++
T Consensus 2 ~~n~~sp~e~rl~n----p~sILe~I~~~r~idvae~k~-~Pg~t~~dLq~~ld~~~aPP~~dF~~~Lr~sh---k~p~l 73 (289)
T KOG4201|consen 2 PENYSSPSETRLRN----PRSILEEIYARRDIDVAEMKE-KPGFTLQDLQKALDLGLAPPLQDFYGALRSSH---KRPGL 73 (289)
T ss_pred CCCCCCchhhhccC----HHHHHHHHHHHhhhhHHHhhc-CCCCcHHHHHHHHhccCCCchHHHHHHHHHhc---ccchH
Confidence 56788999999977 899999999999999999998 77 9999999887 899999999999986 46899
Q ss_pred EEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHh-cCCCCc---EEeccccCCHHHHH
Q 015424 180 IAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRS-AGVKCP---LLCKEFIVDAWQIY 255 (407)
Q Consensus 180 IAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~-a~v~lP---VL~KDFIid~~QI~ 255 (407)
||||||||||+|.|+.+++|+++|++|+++||+||||||||+||+||++||..+|+ +++.+| +||||||+||||||
T Consensus 74 iAEVKrASPSkG~ik~d~~~ae~A~~Yak~GAs~iSVLTe~k~FkGsledL~~irk~~~~k~p~~~lL~KeFivd~~QI~ 153 (289)
T KOG4201|consen 74 IAEVKRASPSKGIIKLDANAAEQALAYAKGGASCISVLTEPKWFKGSLEDLVAIRKIAGVKCPPKCLLRKEFIVDPYQIY 153 (289)
T ss_pred HHHHhhcCCCCCccccccCHHHHHHHHHhcCceeeeeecCchhhcccHHHHHHHHHHhcCcCChHhHhHHHHccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999994 457889 99999999999999
Q ss_pred HHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccC
Q 015424 256 YARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVD 335 (407)
Q Consensus 256 eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vD 335 (407)
+||..|||+||||+++|++.++++|+++++.|||++|||||+++|+++++++ |+++|||||||| ++|++|
T Consensus 154 ~aR~~GADaVLLIvamLs~~~lk~l~k~~K~L~me~LVEVn~~eEm~ralei-GakvvGvNNRnL---------~sFeVD 223 (289)
T KOG4201|consen 154 EARLKGADAVLLIVAMLSDLLLKELYKISKDLGMEPLVEVNDEEEMQRALEI-GAKVVGVNNRNL---------HSFEVD 223 (289)
T ss_pred HHHhcCCceeehHHHHcChHHHHHHHHHHHHcCCcceeeeccHHHHHHHHHh-CcEEEeecCCcc---------ceeeec
Confidence 9999999999999999999999999999999999999999999999999999 999999999999 999999
Q ss_pred chhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhcCccCC
Q 015424 336 NSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFGKDISV 407 (407)
Q Consensus 336 l~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~~~~~~ 407 (407)
+++|.+|++.+ |+++++|++|||+||+|+....++|+.||||||+||++.||.+++.+|++.++|.
T Consensus 224 lstTskL~E~i------~kDvilva~SGi~tpdDia~~q~~GV~avLVGEslmk~sDp~k~i~eL~~r~~se 289 (289)
T KOG4201|consen 224 LSTTSKLLEGI------PKDVILVALSGIFTPDDIAKYQKAGVKAVLVGESLMKQSDPKKFIHELFGRSSSE 289 (289)
T ss_pred hhhHHHHHhhC------ccceEEEeccCCCCHHHHHHHHHcCceEEEecHHHHhccCHHHHHHHHhccccCC
Confidence 99999999873 4789999999999999999999999999999999999999999999999998874
No 3
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-76 Score=567.46 Aligned_cols=253 Identities=52% Similarity=0.827 Sum_probs=243.6
Q ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEEEecccCCCcCCCCCCCCHHHHHHHH
Q 015424 127 LEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSY 206 (407)
Q Consensus 127 Le~Iv~~K~~ev~~~k~~~pl~~l~~~~~~~~~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~ay 206 (407)
|++|+++|+.||++++...|+.+++......+ ++|.+||+.. .++++|||||||+|||+|.|+.++||+++|+.|
T Consensus 1 L~~I~~~k~~ev~~~~~~~~l~~~~~~~~~~~--r~f~~AL~~~---~~~~~vIAEvKkaSPS~G~ir~d~dp~~ia~~Y 75 (254)
T COG0134 1 LEKILADKKEEVAARKAKLPLAELRAKIRSAD--RDFYAALKEA---SGKPAVIAEVKKASPSKGLIREDFDPVEIAKAY 75 (254)
T ss_pred ChHHHHHHHHHHHhhhcccchHHHhhhhhhcc--ccHHHHHHhc---CCCceEEEEeecCCCCCCcccccCCHHHHHHHH
Confidence 68999999999999999999999998876655 9999999986 368999999999999999999999999999999
Q ss_pred HHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHH
Q 015424 207 EKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKL 286 (407)
Q Consensus 207 ~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~ 286 (407)
+++||+|||||||++||+||+++|+.+|+. +++||||||||+|||||++|+.+|||+||||+++|+++++++|+++|++
T Consensus 76 e~~GAa~iSVLTd~~~F~Gs~e~L~~v~~~-v~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~ 154 (254)
T COG0134 76 EEGGAAAISVLTDPKYFQGSFEDLRAVRAA-VDLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLEELVDRAHE 154 (254)
T ss_pred HHhCCeEEEEecCccccCCCHHHHHHHHHh-cCCCeeeccCCCCHHHHHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999997 9999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCC
Q 015424 287 LGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFT 366 (407)
Q Consensus 287 LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t 366 (407)
|||++||||||.+|+++|+++ |+++|||||||| +||++|+++|.+|++.+ |.++++|+||||+|
T Consensus 155 LGm~~LVEVh~~eEl~rAl~~-ga~iIGINnRdL---------~tf~vdl~~t~~la~~~------p~~~~~IsESGI~~ 218 (254)
T COG0134 155 LGMEVLVEVHNEEELERALKL-GAKIIGINNRDL---------TTLEVDLETTEKLAPLI------PKDVILISESGIST 218 (254)
T ss_pred cCCeeEEEECCHHHHHHHHhC-CCCEEEEeCCCc---------chheecHHHHHHHHhhC------CCCcEEEecCCCCC
Confidence 999999999999999999997 999999999999 99999999999999874 56789999999999
Q ss_pred HHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhh
Q 015424 367 PDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 401 (407)
Q Consensus 367 ~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~ 401 (407)
++|+.++..+|+||||||++||+++|+.+++++|+
T Consensus 219 ~~dv~~l~~~ga~a~LVG~slM~~~~~~~a~~~l~ 253 (254)
T COG0134 219 PEDVRRLAKAGADAFLVGEALMRADDPEEALRELL 253 (254)
T ss_pred HHHHHHHHHcCCCEEEecHHHhcCCCHHHHHHHhh
Confidence 99999999999999999999999999999999986
No 4
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=100.00 E-value=4.5e-74 Score=555.02 Aligned_cols=254 Identities=52% Similarity=0.816 Sum_probs=230.4
Q ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEEEecccCCCcCCCCCCCCHHHHHHHH
Q 015424 127 LEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSY 206 (407)
Q Consensus 127 Le~Iv~~K~~ev~~~k~~~pl~~l~~~~~~~~~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~ay 206 (407)
|++|+++|++||+++|++.|+++|++.....+++++|.++|++. .++++|||||||+|||+|.|++++||.++|+.|
T Consensus 1 L~~Iv~~k~~ev~~~k~~~~~~~l~~~~~~~~~~~~f~~aL~~~---~~~~~vIAEiKraSPs~G~i~~~~d~~~~a~~y 77 (254)
T PF00218_consen 1 LDEIVEHKREEVEERKKRVPLEELKKRIEAAPPPRSFKEALRQN---EGRISVIAEIKRASPSKGDIREDFDPAEIAKAY 77 (254)
T ss_dssp HHHHHHHHHHHHHHHHHCSHHHHHHHHHHCSS-TTHHHHHHHSH---TSS-EEEEEE-SEETTTEESBSS-SHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHhcC---CCCCeEEEEeecCCCCCCccCccCCHHHHHHHH
Confidence 79999999999999999999999999998889999999999985 267999999999999999999999999999999
Q ss_pred HHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHH
Q 015424 207 EKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKL 286 (407)
Q Consensus 207 ~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~ 286 (407)
+++||+|||||||++||+||++||..||++ +++||||||||+|||||++|+.+|||+||||+++|++++|.+|+++|++
T Consensus 78 ~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~~-~~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~ 156 (254)
T PF00218_consen 78 EEAGAAAISVLTEPKFFGGSLEDLRAVRKA-VDLPVLRKDFIIDPYQIYEARAAGADAVLLIAAILSDDQLEELLELAHS 156 (254)
T ss_dssp HHTT-SEEEEE--SCCCHHHHHHHHHHHHH-SSS-EEEES---SHHHHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHH
T ss_pred HhcCCCEEEEECCCCCCCCCHHHHHHHHHH-hCCCcccccCCCCHHHHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999997 8999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCC
Q 015424 287 LGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFT 366 (407)
Q Consensus 287 LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t 366 (407)
+||++||||||.+|+++|+.+ |+++|||||||| +||++|++++.+|++.+ |+++++||||||+|
T Consensus 157 lGle~lVEVh~~~El~~al~~-~a~iiGINnRdL---------~tf~vd~~~~~~l~~~i------p~~~~~iseSGI~~ 220 (254)
T PF00218_consen 157 LGLEALVEVHNEEELERALEA-GADIIGINNRDL---------KTFEVDLNRTEELAPLI------PKDVIVISESGIKT 220 (254)
T ss_dssp TT-EEEEEESSHHHHHHHHHT-T-SEEEEESBCT---------TTCCBHTHHHHHHHCHS------HTTSEEEEESS-SS
T ss_pred cCCCeEEEECCHHHHHHHHHc-CCCEEEEeCccc---------cCcccChHHHHHHHhhC------ccceeEEeecCCCC
Confidence 999999999999999999998 999999999999 99999999999999874 46799999999999
Q ss_pred HHHHHHHHHcCCCEEEEcccccCCCChHHHHHhh
Q 015424 367 PDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 400 (407)
Q Consensus 367 ~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L 400 (407)
++|+.++..+|+||||||++||+++||.+++++|
T Consensus 221 ~~d~~~l~~~G~davLVGe~lm~~~d~~~~~~~L 254 (254)
T PF00218_consen 221 PEDARRLARAGADAVLVGEALMRSPDPGEALREL 254 (254)
T ss_dssp HHHHHHHCTTT-SEEEESHHHHTSSSHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEECHHHhCCCCHHHHHhcC
Confidence 9999999999999999999999999999999987
No 5
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=100.00 E-value=1.2e-68 Score=514.88 Aligned_cols=245 Identities=39% Similarity=0.592 Sum_probs=232.4
Q ss_pred cHHHHHHHHHHHHHHHHHhcCChHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEEEecccCCCcCCCCCCCCHHHHHH
Q 015424 125 NILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIAR 204 (407)
Q Consensus 125 ~iLe~Iv~~K~~ev~~~k~~~pl~~l~~~~~~~~~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~ 204 (407)
+||++|+++|++||++++...|+..+ +++|.++|++ +.++|||||||+|||+|.|++++||.++|+
T Consensus 3 ~iL~~I~~~k~~~v~~~~~~~~~~~~---------~~~~~~~l~~-----~~~~vIaEiKr~SPs~G~i~~~~d~~~~A~ 68 (247)
T PRK13957 3 RVLREIIETKQNEIEKISRWDPLPDR---------GLPLRDSLKS-----RSFSIIAECKRKSPSAGELRADYHPVQIAK 68 (247)
T ss_pred cHHHHHHHHHHHHHHHHHhcCChhhh---------hhhHHHHHhC-----CCCeEEEEEecCCCCCCCcCCCCCHHHHHH
Confidence 69999999999999998888887753 3569999864 348999999999999999999999999999
Q ss_pred HHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHH
Q 015424 205 SYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKIC 284 (407)
Q Consensus 205 ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a 284 (407)
.|+++||+|||||||++||+||++||..+|+. +++||||||||+|+|||++|+.+|||+||||+++|++++|.+|++.|
T Consensus 69 ~y~~~GA~aISVlTe~~~F~Gs~~~l~~v~~~-v~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a 147 (247)
T PRK13957 69 TYETLGASAISVLTDQSYFGGSLEDLKSVSSE-LKIPVLRKDFILDEIQIREARAFGASAILLIVRILTPSQIKSFLKHA 147 (247)
T ss_pred HHHHCCCcEEEEEcCCCcCCCCHHHHHHHHHh-cCCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999997 89999999999999999999999999999999999999999999999
Q ss_pred HHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCC
Q 015424 285 KLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGL 364 (407)
Q Consensus 285 ~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI 364 (407)
+++||++||||||++|+++|+++ |+++|||||||| +||++|++++.+|++.+ |+++++|+||||
T Consensus 148 ~~lGle~LVEVh~~~El~~a~~~-ga~iiGINnRdL---------~t~~vd~~~~~~L~~~i------p~~~~~IsESGI 211 (247)
T PRK13957 148 SSLGMDVLVEVHTEDEAKLALDC-GAEIIGINTRDL---------DTFQIHQNLVEEVAAFL------PPNIVKVGESGI 211 (247)
T ss_pred HHcCCceEEEECCHHHHHHHHhC-CCCEEEEeCCCC---------ccceECHHHHHHHHhhC------CCCcEEEEcCCC
Confidence 99999999999999999999998 999999999999 99999999999999873 467899999999
Q ss_pred CCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhh
Q 015424 365 FTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 401 (407)
Q Consensus 365 ~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~ 401 (407)
+|++|+.++..+ +||||||++||+++||.+++++|+
T Consensus 212 ~t~~d~~~l~~~-~davLvG~~lm~~~d~~~~~~~l~ 247 (247)
T PRK13957 212 ESRSDLDKFRKL-VDAALIGTYFMEKKDIRKAWLSLF 247 (247)
T ss_pred CCHHHHHHHHHh-CCEEEECHHHhCCCCHHHHHHHhC
Confidence 999999999987 999999999999999999999985
No 6
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=1.4e-67 Score=567.02 Aligned_cols=259 Identities=37% Similarity=0.570 Sum_probs=248.1
Q ss_pred ccHHHHHHHHHHHHHHHHHhcCChHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEEEecccCCCcCCCCCCCCHHHHH
Q 015424 124 RNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIA 203 (407)
Q Consensus 124 ~~iLe~Iv~~K~~ev~~~k~~~pl~~l~~~~~~~~~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA 203 (407)
|+||++|+++|++||++++...|+++|++.+...+++++|..+|+.. +.++|||||||+|||+|.|++++||.++|
T Consensus 1 ~~iL~~Ii~~k~~ev~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~----~~~~vIaEiKraSPs~G~i~~~~d~~~~a 76 (695)
T PRK13802 1 MSVLDELVAGALEDQRTRELTVSLEEVKKAAAAAPAPIDATRWLKRA----DGIPVIAEIKRASPSKGHLSDIPDPAALA 76 (695)
T ss_pred CcHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhhCCCcccHHHHHhhC----CCCeEEEEeecCCCCCCcCCCCCCHHHHH
Confidence 47999999999999999999999999998877778889999999853 34799999999999999999999999999
Q ss_pred HHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHH
Q 015424 204 RSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKI 283 (407)
Q Consensus 204 ~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~ 283 (407)
+.|+++||+|||||||++||+||++||..||+. +++||||||||+|+|||++|+.+|||+||||+++|++++|++|+++
T Consensus 77 ~~y~~~GA~aiSVlTe~~~F~Gs~~~l~~vr~~-v~~PvLrKDFIid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~ 155 (695)
T PRK13802 77 REYEQGGASAISVLTEGRRFLGSLDDFDKVRAA-VHIPVLRKDFIVTDYQIWEARAHGADLVLLIVAALDDAQLKHLLDL 155 (695)
T ss_pred HHHHHcCCcEEEEecCcCcCCCCHHHHHHHHHh-CCCCEEeccccCCHHHHHHHHHcCCCEeehhHhhcCHHHHHHHHHH
Confidence 999999999999999999999999999999997 9999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeC
Q 015424 284 CKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESG 363 (407)
Q Consensus 284 a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESG 363 (407)
|+++||++||||||.+|+++|+++ |+++|||||||| +||++|++++.+|++.+ |+++++|+|||
T Consensus 156 a~~lGme~LvEvh~~~el~~a~~~-ga~iiGINnRdL---------~tf~vd~~~t~~L~~~i------p~~~~~VsESG 219 (695)
T PRK13802 156 AHELGMTVLVETHTREEIERAIAA-GAKVIGINARNL---------KDLKVDVNKYNELAADL------PDDVIKVAESG 219 (695)
T ss_pred HHHcCCeEEEEeCCHHHHHHHHhC-CCCEEEEeCCCC---------ccceeCHHHHHHHHhhC------CCCcEEEEcCC
Confidence 999999999999999999999998 999999999999 99999999999999873 46889999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhcC
Q 015424 364 LFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFGK 403 (407)
Q Consensus 364 I~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~~ 403 (407)
|+|++|+.+++++|+|||||||+||+++||.+.+++|+..
T Consensus 220 I~~~~d~~~l~~~G~davLIGeslm~~~dp~~~~~~l~~~ 259 (695)
T PRK13802 220 VFGAVEVEDYARAGADAVLVGEGVATADDHELAVERLVKA 259 (695)
T ss_pred CCCHHHHHHHHHCCCCEEEECHHhhCCCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999864
No 7
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=100.00 E-value=1.6e-67 Score=544.96 Aligned_cols=254 Identities=41% Similarity=0.681 Sum_probs=240.2
Q ss_pred ccHHHHHHHHHHHHHHHHHhcCChHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEEEecccCCCcCCCCCCCCHHHHH
Q 015424 124 RNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIA 203 (407)
Q Consensus 124 ~~iLe~Iv~~K~~ev~~~k~~~pl~~l~~~~~~~~~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA 203 (407)
.++|++|+++|++||++++...|+.++++... +++++|..+|+. ++++|||||||+|||+|.|++++||.++|
T Consensus 4 ~~iL~~Ii~~k~~ev~~~~~~~~~~~~~~~~~--~~~~~~~~al~~-----~~~~vIaEiKraSPs~G~i~~~~d~~~~a 76 (454)
T PRK09427 4 PTVLAKIVADKAIWVAARKQQQPLASFQNEIQ--PSDRSFYDALKG-----PKTAFILECKKASPSKGLIRDDFDPAEIA 76 (454)
T ss_pred chHHHHHHHHHHHHHHHHhhcCCHHHHHhhcC--cCCCCHHHHHhc-----CCCceEEEeecCCCCCCccCCCCCHHHHH
Confidence 47999999999999999999999999987653 567899999974 34799999999999999999999999999
Q ss_pred HHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHH
Q 015424 204 RSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKI 283 (407)
Q Consensus 204 ~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~ 283 (407)
+.| ++||+|||||||++||+||++||..+|++ +++||||||||+|+|||++|+.+|||+||||+++|++++|.+|+++
T Consensus 77 ~~y-~~gA~aiSVlTe~~~F~Gs~~~l~~vr~~-v~~PvLrKDFiid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~ 154 (454)
T PRK09427 77 RVY-KHYASAISVLTDEKYFQGSFDFLPIVRAI-VTQPILCKDFIIDPYQIYLARYYGADAILLMLSVLDDEQYRQLAAV 154 (454)
T ss_pred HHH-HcCCeEEEEecCcCcCCCCHHHHHHHHHh-CCCCEEeccccCCHHHHHHHHHcCCCchhHHHHhCCHHHHHHHHHH
Confidence 999 78899999999999999999999999997 9999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeC
Q 015424 284 CKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESG 363 (407)
Q Consensus 284 a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESG 363 (407)
|+++||++||||||++|+++|+++ |+++|||||||| +||++|++++.+|++.+ |+++++|+|||
T Consensus 155 a~~lGl~~lvEvh~~~El~~al~~-~a~iiGiNnRdL---------~t~~vd~~~~~~l~~~i------p~~~~~vseSG 218 (454)
T PRK09427 155 AHSLNMGVLTEVSNEEELERAIAL-GAKVIGINNRNL---------RDLSIDLNRTRELAPLI------PADVIVISESG 218 (454)
T ss_pred HHHcCCcEEEEECCHHHHHHHHhC-CCCEEEEeCCCC---------ccceECHHHHHHHHhhC------CCCcEEEEeCC
Confidence 999999999999999999999998 999999999999 99999999999999873 46789999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhcC
Q 015424 364 LFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFGK 403 (407)
Q Consensus 364 I~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~~ 403 (407)
|+|++|+.++.. |+|||||||+||+++||.+++++|+..
T Consensus 219 I~t~~d~~~~~~-~~davLiG~~lm~~~d~~~~~~~L~~~ 257 (454)
T PRK09427 219 IYTHAQVRELSP-FANGFLIGSSLMAEDDLELAVRKLILG 257 (454)
T ss_pred CCCHHHHHHHHh-cCCEEEECHHHcCCCCHHHHHHHHhcc
Confidence 999999999976 799999999999999999999999764
No 8
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=100.00 E-value=3.2e-62 Score=473.40 Aligned_cols=258 Identities=55% Similarity=0.862 Sum_probs=245.3
Q ss_pred cccHHHHHHHHHHHHHHHHHhcCChHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEEEecccCCCcCCCCCCCCHHHH
Q 015424 123 PRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEI 202 (407)
Q Consensus 123 p~~iLe~Iv~~K~~ev~~~k~~~pl~~l~~~~~~~~~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~i 202 (407)
++++|++|+++|+++|++++...|+++|++.+...+.+++|..+|+. ++++|||||||+|||+|+|+.++||.++
T Consensus 1 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~vIaeik~~sps~g~i~~~~~~~~~ 75 (260)
T PRK00278 1 MMDILDKIVAYKREEVAARKAQVPLAELKARAAAAPPPRDFAAALRA-----GKPAVIAEVKKASPSKGVIREDFDPVEI 75 (260)
T ss_pred CccHHHHHHHHHHHHHHHHhccCCHHHHHHHHhhCCCCcCHHHHHhc-----CCCeEEEEeeCCCCCCCccCCCCCHHHH
Confidence 36899999999999999999999999999987777778999999973 4589999999999999999999999999
Q ss_pred HHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHH
Q 015424 203 ARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTK 282 (407)
Q Consensus 203 A~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~ 282 (407)
|+.|+++||+||||+||+.||+|+++||..||+. +++|||+||||+|+|||++++.+|||+|+|+++.|+++++++|++
T Consensus 76 A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~-v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~ 154 (260)
T PRK00278 76 AKAYEAGGAACLSVLTDERFFQGSLEYLRAARAA-VSLPVLRKDFIIDPYQIYEARAAGADAILLIVAALDDEQLKELLD 154 (260)
T ss_pred HHHHHhCCCeEEEEecccccCCCCHHHHHHHHHh-cCCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHH
Confidence 9999999999999999999999999999999997 999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEee
Q 015424 283 ICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGES 362 (407)
Q Consensus 283 ~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAES 362 (407)
+++++||++||||||.+|+++|.++ |+++||+||||+ .||++|++.+.+|++.+ |.+.++|+||
T Consensus 155 ~a~~lGl~~lvevh~~~E~~~A~~~-gadiIgin~rdl---------~~~~~d~~~~~~l~~~~------p~~~~vIaeg 218 (260)
T PRK00278 155 YAHSLGLDVLVEVHDEEELERALKL-GAPLIGINNRNL---------KTFEVDLETTERLAPLI------PSDRLVVSES 218 (260)
T ss_pred HHHHcCCeEEEEeCCHHHHHHHHHc-CCCEEEECCCCc---------ccccCCHHHHHHHHHhC------CCCCEEEEEe
Confidence 9999999999999999999999998 999999999999 99999999999998763 3457999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 363 GLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 363 GI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
||.|++|+.++.++|+|+|+||++||+++||.+.+++|..
T Consensus 219 GI~t~ed~~~~~~~Gad~vlVGsaI~~~~dp~~~~~~l~~ 258 (260)
T PRK00278 219 GIFTPEDLKRLAKAGADAVLVGESLMRADDPGAALRELLG 258 (260)
T ss_pred CCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHhc
Confidence 9999999999999999999999999999999999999865
No 9
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=100.00 E-value=9.9e-43 Score=325.97 Aligned_cols=209 Identities=54% Similarity=0.887 Sum_probs=198.6
Q ss_pred CCceEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHH
Q 015424 175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQI 254 (407)
Q Consensus 175 ~~~~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI 254 (407)
++++||||+||+|||.|.++...+|.++|+.|+++||++|||+|++.+|+|+++++..||+. +++||++||||++++|+
T Consensus 9 ~~~~vIae~k~~sp~~~~~~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~-v~iPi~~~~~i~~~~~v 87 (217)
T cd00331 9 GGLGVIAEVKRASPSKGLIREDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREA-VSLPVLRKDFIIDPYQI 87 (217)
T ss_pred CCceEEEEecCCCCCCCcCCCCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHh-cCCCEEECCeecCHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999997 89999999999999999
Q ss_pred HHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeecccccccccccccccccc
Q 015424 255 YYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEV 334 (407)
Q Consensus 255 ~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~v 334 (407)
.+++++|||+|+|+.+.++.++++++++.++.+|++++++||+.+|++++.++ |++++|+|++|. +++.+
T Consensus 88 ~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~~e~~~~~~~-g~~~i~~t~~~~---------~~~~~ 157 (217)
T cd00331 88 YEARAAGADAVLLIVAALDDEQLKELYELARELGMEVLVEVHDEEELERALAL-GAKIIGINNRDL---------KTFEV 157 (217)
T ss_pred HHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHc-CCCEEEEeCCCc---------cccCc
Confidence 99999999999999999998889999999999999999999999999999998 999999999999 88999
Q ss_pred CchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhh
Q 015424 335 DNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 400 (407)
Q Consensus 335 Dl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L 400 (407)
|++.+.++.+.+ +.+++++++|||++++|+.++.++|+++|+||++||+..||.+.+++|
T Consensus 158 ~~~~~~~l~~~~------~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~~~~p~~~~~~~ 217 (217)
T cd00331 158 DLNTTERLAPLI------PKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMRAPDPGAALREL 217 (217)
T ss_pred CHHHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHhC
Confidence 998888887652 246799999999999999999999999999999999999999999875
No 10
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=99.93 E-value=1.6e-24 Score=203.75 Aligned_cols=201 Identities=21% Similarity=0.252 Sum_probs=166.5
Q ss_pred eEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEE---ecc-----ccC
Q 015424 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL---CKE-----FIV 249 (407)
Q Consensus 178 ~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL---~KD-----FIi 249 (407)
++|.-+--. +.+.|+...++.++|++|.++||.++++. ++++++.+|+. +++|+| +|| |++
T Consensus 6 ~~~~~~~~~--~~~~~~~~~~~~~~a~a~~~~G~~~~~~~--------~~~~i~~i~~~-~~~Pil~~~~~d~~~~~~~~ 74 (221)
T PRK01130 6 GLIVSCQAL--PGEPLHSPEIMAAMALAAVQGGAVGIRAN--------GVEDIKAIRAV-VDVPIIGIIKRDYPDSEVYI 74 (221)
T ss_pred CEEEEecCC--CCCCCCCHHHHHHHHHHHHHCCCeEEEcC--------CHHHHHHHHHh-CCCCEEEEEecCCCCCCceE
Confidence 355544443 23568888999999999999999999983 48999999987 899998 888 566
Q ss_pred CHH--HHHHHHHcCCCEEEEeccCCC-H--HHHHHHHHHHHH-cCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccc
Q 015424 250 DAW--QIYYARTKGADAVLLIAAVLP-D--LDIRYMTKICKL-LGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAIS 323 (407)
Q Consensus 250 d~~--QI~eAr~~GADaVLLiaaiL~-~--~~L~~Li~~a~~-LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~ 323 (407)
+++ |+.+++.+|||.|+++...+. + .++.++++.+++ .|+.+++++|+.+|+.++.++ |+++|++|++++
T Consensus 75 ~~~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~-G~d~i~~~~~g~--- 150 (221)
T PRK01130 75 TPTLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADCSTLEEGLAAQKL-GFDFIGTTLSGY--- 150 (221)
T ss_pred CCCHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHc-CCCEEEcCCcee---
Confidence 654 899999999999999988763 2 578899999999 999999999999999999997 999999988776
Q ss_pred cccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 324 IFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 324 ~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
.+.+..+...+++...++.+. .+++++++|||++++|+.++.++|+|+|+||++|++..++.+.+.+++.
T Consensus 151 -t~~~~~~~~~~~~~i~~i~~~--------~~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~~~~~~~~~~~~~~ 220 (221)
T PRK01130 151 -TEETKKPEEPDFALLKELLKA--------VGCPVIAEGRINTPEQAKKALELGAHAVVVGGAITRPEEITKWFVDALK 220 (221)
T ss_pred -ecCCCCCCCcCHHHHHHHHHh--------CCCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcCCHHHHHHHHHHhh
Confidence 111112344566666666553 2578999999999999999999999999999999999999999988765
No 11
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=99.92 E-value=8.2e-24 Score=198.95 Aligned_cols=195 Identities=21% Similarity=0.250 Sum_probs=165.1
Q ss_pred eEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEE---eccc-----cC
Q 015424 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL---CKEF-----IV 249 (407)
Q Consensus 178 ~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL---~KDF-----Ii 249 (407)
++|.-+.-- ++|.+.+..++.++|++|.++|+.++|+ +++++++.+|+. +++|++ +||| ++
T Consensus 10 ~~~~~~~~~--~~~~~~~~~~i~~~a~~~~~~G~~~~~~--------~~~~~~~~i~~~-~~iPil~~~~~~~~~~~~~i 78 (219)
T cd04729 10 GLIVSCQAL--PGEPLHSPEIMAAMALAAVQGGAVGIRA--------NGVEDIRAIRAR-VDLPIIGLIKRDYPDSEVYI 78 (219)
T ss_pred CeEEEccCC--CCCCcCcHHHHHHHHHHHHHCCCeEEEc--------CCHHHHHHHHHh-CCCCEEEEEecCCCCCCcee
Confidence 577766555 7899999999999999999999999996 789999999987 899998 6888 56
Q ss_pred CHH--HHHHHHHcCCCEEEEeccCCC--H-HHHHHHHHHHHHcC-CcEEEEeCCHHHHHHHhcccCCcEEEeeccccccc
Q 015424 250 DAW--QIYYARTKGADAVLLIAAVLP--D-LDIRYMTKICKLLG-LTALVEVHDEREMDRVLGIEGIELIGINNRNLAIS 323 (407)
Q Consensus 250 d~~--QI~eAr~~GADaVLLiaaiL~--~-~~L~~Li~~a~~LG-L~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~ 323 (407)
+++ |++.++++|||.|+++...+. . +++.++++.++++| +..+++++|.+|+.++.++ |+++|++|++++
T Consensus 79 g~~~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v~t~~ea~~a~~~-G~d~i~~~~~g~--- 154 (219)
T cd04729 79 TPTIEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMADISTLEEALNAAKL-GFDIIGTTLSGY--- 154 (219)
T ss_pred CCCHHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEEECCCHHHHHHHHHc-CCCEEEccCccc---
Confidence 666 999999999999999988763 2 37888999999998 9999999999999999997 999999987765
Q ss_pred cccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHH
Q 015424 324 IFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKG 396 (407)
Q Consensus 324 ~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~ 396 (407)
++....+...+++...++.+. .++++++.|||++++|+.++.++|||+|+||++||+.+||.++
T Consensus 155 -t~~~~~~~~~~~~~l~~i~~~--------~~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~~~~~~~~ 218 (219)
T cd04729 155 -TEETAKTEDPDFELLKELRKA--------LGIPVIAEGRINSPEQAAKALELGADAVVVGSAITRPEHITGW 218 (219)
T ss_pred -cccccCCCCCCHHHHHHHHHh--------cCCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhChHhHhhh
Confidence 111112344566666666553 2578999999999999999999999999999999999999875
No 12
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=99.91 E-value=7.7e-24 Score=196.65 Aligned_cols=179 Identities=22% Similarity=0.334 Sum_probs=138.9
Q ss_pred HHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEE--ec-c------ccCCHH-HHHHHHHcCCCEEEEe
Q 015424 199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL--CK-E------FIVDAW-QIYYARTKGADAVLLI 268 (407)
Q Consensus 199 p~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL--~K-D------FIid~~-QI~eAr~~GADaVLLi 268 (407)
+..||++.++|||.+|++. +++|++.||+. +++||+ .| | ||.+.. .+.+...+|||.|.|.
T Consensus 1 m~~mA~Aa~~gGA~giR~~--------~~~dI~aik~~-v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlD 71 (192)
T PF04131_consen 1 MARMAKAAEEGGAVGIRAN--------GVEDIRAIKKA-VDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALD 71 (192)
T ss_dssp HHHHHHHHHHCT-SEEEEE--------SHHHHHHHHTT-B-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE
T ss_pred CHHHHHHHHHCCceEEEcC--------CHHHHHHHHHh-cCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEe
Confidence 3579999999999999995 79999999997 999998 33 3 566555 5788889999999999
Q ss_pred ccCCC-HHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhccc
Q 015424 269 AAVLP-DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGER 347 (407)
Q Consensus 269 aaiL~-~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~ 347 (407)
++... +..+.+|++.+|+.+...|.+|+|.+|...|.++ |+|+||.+.+.| +++++. ..+|++...+|.+
T Consensus 72 aT~R~Rp~~l~~li~~i~~~~~l~MADist~ee~~~A~~~-G~D~I~TTLsGY----T~~t~~-~~pD~~lv~~l~~--- 142 (192)
T PF04131_consen 72 ATDRPRPETLEELIREIKEKYQLVMADISTLEEAINAAEL-GFDIIGTTLSGY----TPYTKG-DGPDFELVRELVQ--- 142 (192)
T ss_dssp -SSSS-SS-HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHT-T-SEEE-TTTTS----STTSTT-SSHHHHHHHHHHH---
T ss_pred cCCCCCCcCHHHHHHHHHHhCcEEeeecCCHHHHHHHHHc-CCCEEEcccccC----CCCCCC-CCCCHHHHHHHHh---
Confidence 99762 3789999999999999999999999999999998 999999986655 444444 6678877777764
Q ss_pred ccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhh
Q 015424 348 GEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 401 (407)
Q Consensus 348 ~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~ 401 (407)
.++++|+||+|+||+++.++.++||++|+||++|+++..+.+++.+-+
T Consensus 143 ------~~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAITrP~~It~~F~~ai 190 (192)
T PF04131_consen 143 ------ADVPVIAEGRIHTPEQAAKALELGAHAVVVGSAITRPQEITKRFVDAI 190 (192)
T ss_dssp ------TTSEEEEESS--SHHHHHHHHHTT-SEEEE-HHHH-HHHHHHHHHHHC
T ss_pred ------CCCcEeecCCCCCHHHHHHHHhcCCeEEEECcccCCHHHHHHHHHHHH
Confidence 257899999999999999999999999999999999999998887654
No 13
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=99.90 E-value=8.6e-23 Score=191.22 Aligned_cols=200 Identities=23% Similarity=0.299 Sum_probs=169.4
Q ss_pred eEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEE---ecc------cc
Q 015424 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL---CKE------FI 248 (407)
Q Consensus 178 ~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL---~KD------FI 248 (407)
++|+-|-.- | ..-++..+-...||++.+++||.+|++. +.+|++.+|+. |++||+ .+| ||
T Consensus 16 glIVSCQal-~-~~pl~~~~iv~~mA~Aa~~gGAvgiR~~--------gv~dIkai~~~-v~vPIIGIiKrd~~~s~v~I 84 (229)
T COG3010 16 GLIVSCQAL-P-GEPLDSPEIVAAMALAAEQGGAVGIRIE--------GVEDIKAIRAV-VDVPIIGIIKRDYPDSPVRI 84 (229)
T ss_pred CeEEEeecC-C-CCCCcchhHHHHHHHHHHhCCcceEeec--------chhhHHHHHhh-CCCCeEEEEecCCCCCCcee
Confidence 466666432 1 1235667888999999999999999994 79999999997 999997 455 56
Q ss_pred CCHH-HHHHHHHcCCCEEEEeccCCC--HHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccc
Q 015424 249 VDAW-QIYYARTKGADAVLLIAAVLP--DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIF 325 (407)
Q Consensus 249 id~~-QI~eAr~~GADaVLLiaaiL~--~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~ 325 (407)
.+.. .|.+..++||+.|.+.++..+ +.++++|+++.|..|...|.+|+|.+|...|.++ |+++||.+...| +
T Consensus 85 TptlkeVd~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~-G~D~IGTTLsGY----T 159 (229)
T COG3010 85 TPTLKEVDALAEAGADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLNAHKL-GFDIIGTTLSGY----T 159 (229)
T ss_pred cccHHHHHHHHHCCCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHHHHHHc-CCcEEecccccc----c
Confidence 6554 588889999999999999883 3379999999999999999999999999999998 999999987766 5
Q ss_pred cccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 326 SYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 326 ~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
+|+.+.-++|++..++|.+ .++.+|+||.++||+++++..+.|+++|+||+||+++..+.+++.+.+.
T Consensus 160 ~~~~~~~~pDf~lvk~l~~---------~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAITRp~~It~~F~~~ik 227 (229)
T COG3010 160 GYTEKPTEPDFQLVKQLSD---------AGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAITRPEEITQWFVDAIK 227 (229)
T ss_pred CCCCCCCCCcHHHHHHHHh---------CCCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccCCHHHHHHHHHHHHh
Confidence 5555666789888877765 3789999999999999999999999999999999999999999887664
No 14
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=99.83 E-value=3.6e-19 Score=174.07 Aligned_cols=187 Identities=22% Similarity=0.238 Sum_probs=146.7
Q ss_pred HHHHHHHHHcCCcEEEEE----ecCCcCCC-----CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEecc
Q 015424 200 VEIARSYEKGGAACLSIL----TDEKYFKG-----SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA 270 (407)
Q Consensus 200 ~~iA~ay~~~GA~aISVL----Td~~~F~G-----s~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa 270 (407)
+++|+..+++||.++.+| .|...-+| +++|++.||+. |++||+.+--+-+-..+.+..++|||.| .++
T Consensus 18 ~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~-V~iPVIGi~K~~~~~Ea~~L~eaGvDiI--DaT 94 (283)
T cd04727 18 AEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDA-VSIPVMAKVRIGHFVEAQILEALGVDMI--DES 94 (283)
T ss_pred HHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHh-CCCCeEEeeehhHHHHHHHHHHcCCCEE--ecc
Confidence 479999999999998887 46655555 89999999997 9999984322223455666678999999 455
Q ss_pred C-CCHHHHHHHHHHHHH-cCCcEEEEeCCHHHHHHHhcccCCcEEEeecccccccc-------------------ccccc
Q 015424 271 V-LPDLDIRYMTKICKL-LGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISI-------------------FSYRT 329 (407)
Q Consensus 271 i-L~~~~L~~Li~~a~~-LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~-------------------~~~t~ 329 (407)
. +.+ +.++++..+. ++...|.+|+|.+|+.++.++ |+++||.+...+ |+ .+||.
T Consensus 95 ~r~rP--~~~~~~~iK~~~~~l~MAD~stleEal~a~~~-Gad~I~TTl~gy--T~~~~~~~~~~~~i~~~i~~~~gyt~ 169 (283)
T cd04727 95 EVLTP--ADEEHHIDKHKFKVPFVCGARNLGEALRRISE-GAAMIRTKGEAG--TGNVVEAVRHMRAVNGEIRKLQSMSE 169 (283)
T ss_pred CCCCc--HHHHHHHHHHHcCCcEEccCCCHHHHHHHHHC-CCCEEEecCCCC--CCcHHHHHHHHHHHHHHHHHHhCCCH
Confidence 4 344 4667777776 699999999999999999997 999999986544 22 24443
Q ss_pred cc-------cccCchhHHHHhhcccccccccCCceEE--EeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhh
Q 015424 330 ET-------FEVDNSNTKKLLEGERGEIIRQKNIIVV--GESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 400 (407)
Q Consensus 330 ~T-------f~vDl~~t~~L~~~~~~~~i~~~~v~vV--AESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L 400 (407)
.| ..+|++...++.+. .++++| ++|||+||+|+..++++||++|+||++||+++||...+++|
T Consensus 170 ~t~~~~~~~~~~d~elLk~l~~~--------~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f 241 (283)
T cd04727 170 EELYAVAKEIQAPYELVKETAKL--------GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAI 241 (283)
T ss_pred HHHHhhhcccCCCHHHHHHHHHh--------cCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHH
Confidence 34 34677777777654 134565 99999999999999999999999999999999999988887
Q ss_pred hc
Q 015424 401 FG 402 (407)
Q Consensus 401 ~~ 402 (407)
..
T Consensus 242 ~~ 243 (283)
T cd04727 242 VE 243 (283)
T ss_pred HH
Confidence 64
No 15
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=99.83 E-value=2.8e-19 Score=168.57 Aligned_cols=176 Identities=22% Similarity=0.288 Sum_probs=141.6
Q ss_pred CCHHHHHHHHHHcCCcEEEEEecCCcCCCCH---HHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCC
Q 015424 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSF---ENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (407)
Q Consensus 197 ~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~---edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~ 273 (407)
.||.++|+.|.+.||.+|+|++.+.+|.|.. +.++.+++. +++|++.+++|.+..++.++..+|||.|++++..+.
T Consensus 28 ~dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~-~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~ 106 (230)
T TIGR00007 28 DDPVEAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRE-TGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVE 106 (230)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHHh-cCCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 4999999999999999999999999998875 556666665 789999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHcCCcEEE----------EeC--------CHHHH-HHHhcccCCcEE--Eeecccccccccccccccc
Q 015424 274 DLDIRYMTKICKLLGLTALV----------EVH--------DEREM-DRVLGIEGIELI--GINNRNLAISIFSYRTETF 332 (407)
Q Consensus 274 ~~~L~~Li~~a~~LGL~aLV----------EVh--------t~eEl-erAl~l~Ga~iI--GINnRdL~~~~~~~t~~Tf 332 (407)
+.++ +.+.++.+|.+.++ .++ +..++ +++.+. |++-+ .-.+|+. .+.
T Consensus 107 d~~~--~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~-g~~~ii~~~~~~~g---------~~~ 174 (230)
T TIGR00007 107 NPDL--VKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEEL-GLEGIIYTDISRDG---------TLS 174 (230)
T ss_pred CHHH--HHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhC-CCCEEEEEeecCCC---------CcC
Confidence 6443 77788888866432 222 33333 445554 88833 4445555 556
Q ss_pred ccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCCh
Q 015424 333 EVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDP 393 (407)
Q Consensus 333 ~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp 393 (407)
.+|++...++.+. .+++++++|||.+++|++++++.||++|+||+++++..-+
T Consensus 175 g~~~~~i~~i~~~--------~~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~~~~~ 227 (230)
T TIGR00007 175 GPNFELTKELVKA--------VNVPVIASGGVSSIDDLIALKKLGVYGVIVGKALYEGKIT 227 (230)
T ss_pred CCCHHHHHHHHHh--------CCCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHcCCCC
Confidence 6888888888664 3579999999999999999999999999999999987643
No 16
>PRK04302 triosephosphate isomerase; Provisional
Probab=99.80 E-value=2.1e-18 Score=163.41 Aligned_cols=207 Identities=20% Similarity=0.268 Sum_probs=152.0
Q ss_pred ceEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCC-cEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHH---
Q 015424 177 PALIAEVKKASPSRGILREDFDPVEIARSYEKGGA-ACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAW--- 252 (407)
Q Consensus 177 ~~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA-~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~--- 252 (407)
+-|++..|=. ++.. ..+..++++...+... ..+-| ++..++.+|..+++. +++||..+|+-...+
T Consensus 4 ~~~~~n~K~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~-----~~~p~~~~l~~v~~~-~~i~v~aq~~~~~~~G~~ 72 (223)
T PRK04302 4 PIILVNFKTY-PEAT----GKDALEIAKAAEKVSKETGVRI-----AVAPQALDIRRVAEE-VDIPVYAQHVDPVEPGSH 72 (223)
T ss_pred CEEEEECCCC-CCCC----HHHHHHHHHHHHhccccCCCEE-----EEECCHHHHHHHHHh-cCCeEEeccCCCCCCCCc
Confidence 4577887644 3210 1244456655544211 11222 234679999999986 899999888654332
Q ss_pred ----HHHHHHHcCCCEEEEecc--CCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeecccccccccc
Q 015424 253 ----QIYYARTKGADAVLLIAA--VLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFS 326 (407)
Q Consensus 253 ----QI~eAr~~GADaVLLiaa--iL~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~ 326 (407)
.+..++.+|||+|+++.+ .+...++.++++.++++||.+++++|+.+++.++.+. ++++|+++++++++++.+
T Consensus 73 tg~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~~v~~~~~~~~~~~~-~~~~I~~~p~~~igt~~~ 151 (223)
T PRK04302 73 TGHILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVVCVNNPETSAAAAAL-GPDYVAVEPPELIGTGIP 151 (223)
T ss_pred hhhhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHhcC-CCCEEEEeCccccccCCC
Confidence 356678899999999986 6777789999999999999999999999999998887 899999999988554432
Q ss_pred ccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 327 YRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 327 ~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
.. ..+.+...++.+.++. . ..+++++++|||++++++..+.+.|+|||+||+++++.+||.+.+++|.+
T Consensus 152 ~~----~~~~~~i~~~~~~ir~--~-~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~~~~~~~~~~~~~ 220 (223)
T PRK04302 152 VS----KAKPEVVEDAVEAVKK--V-NPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVKAKDPEAALRDLVS 220 (223)
T ss_pred CC----cCCHHHHHHHHHHHHh--c-cCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCCcCHHHHHHHHHh
Confidence 21 1222233333332221 1 13679999999999999999999999999999999999999999998874
No 17
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=99.78 E-value=9.3e-18 Score=164.37 Aligned_cols=187 Identities=22% Similarity=0.242 Sum_probs=143.9
Q ss_pred HHHHHHHHHcCCcEEEEE----ecCCcCCC-----CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEecc
Q 015424 200 VEIARSYEKGGAACLSIL----TDEKYFKG-----SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA 270 (407)
Q Consensus 200 ~~iA~ay~~~GA~aISVL----Td~~~F~G-----s~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa 270 (407)
.++|+..+++||.++..| .|...-+| ++++++.|+++ |++||+.|--|-+-..+....++|+|.| ..+
T Consensus 20 ~eqa~iae~aga~avm~le~~p~d~r~~ggv~R~~~p~~I~~I~~~-V~iPVig~~kigh~~Ea~~L~~~GvDiI--DeT 96 (287)
T TIGR00343 20 PEQAKIAEEAGAVAVMALERVPADIRASGGVARMSDPKMIKEIMDA-VSIPVMAKVRIGHFVEAQILEALGVDYI--DES 96 (287)
T ss_pred HHHHHHHHHcCceEEEeeccCchhhHhcCCeeecCCHHHHHHHHHh-CCCCEEEEeeccHHHHHHHHHHcCCCEE--Ecc
Confidence 479999999999999987 56566666 89999999997 9999996544444444444566999999 454
Q ss_pred -CCCHHHHHHHHHHHHH-cCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccc---------cccc----------
Q 015424 271 -VLPDLDIRYMTKICKL-LGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIF---------SYRT---------- 329 (407)
Q Consensus 271 -iL~~~~L~~Li~~a~~-LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~---------~~t~---------- 329 (407)
.+++ ..+++...+. ++...+++++|.+|+.++.++ |+++|+.....+ |+. +||.
T Consensus 97 e~lrP--ade~~~~~K~~f~vpfmad~~~l~EAlrai~~-GadmI~Tt~e~g--Tg~v~~av~hlr~~~~~~~~~~~~~~ 171 (287)
T TIGR00343 97 EVLTP--ADWTFHIDKKKFKVPFVCGARDLGEALRRINE-GAAMIRTKGEAG--TGNIVEAVRHMRKINEEIRQIQNMLE 171 (287)
T ss_pred CCCCc--HHHHHHHHHHHcCCCEEccCCCHHHHHHHHHC-CCCEEeccccCC--CccHHHHHHHHHHHHHHHHHHhcccc
Confidence 4555 3556666665 799999999999999999997 999999974422 111 1111
Q ss_pred --------cccccCchhHHHHhhcccccccccCCceEE--EeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHh
Q 015424 330 --------ETFEVDNSNTKKLLEGERGEIIRQKNIIVV--GESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITG 399 (407)
Q Consensus 330 --------~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vV--AESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~ 399 (407)
+...++++...++.+. ..+++| ++|||.||+|+..++++|||+|+||++|+++.||.+..+.
T Consensus 172 ~~~~~~~a~~~~~~~elLkei~~~--------~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~aka 243 (287)
T TIGR00343 172 EEDLAAVAKELRVPVELLLEVLKL--------GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKA 243 (287)
T ss_pred hhHHhhhhcccCCCHHHHHHHHHh--------CCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHH
Confidence 1134666666666553 235676 9999999999999999999999999999999999988887
Q ss_pred hhc
Q 015424 400 LFG 402 (407)
Q Consensus 400 L~~ 402 (407)
|..
T Consensus 244 fv~ 246 (287)
T TIGR00343 244 IVE 246 (287)
T ss_pred HHH
Confidence 764
No 18
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=99.77 E-value=1.9e-17 Score=155.96 Aligned_cols=180 Identities=22% Similarity=0.255 Sum_probs=139.5
Q ss_pred CCCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHH---hcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCC
Q 015424 196 DFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVR---SAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (407)
Q Consensus 196 ~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr---~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (407)
..||.++|+.|.+.|++.++|++...++.|...|+..++ +. +++||+.+++|.+..++.++..+|||.|+++.+.+
T Consensus 29 ~~~~~~~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~-~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l 107 (233)
T PRK00748 29 SDDPVAQAKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVKA-VDIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAV 107 (233)
T ss_pred cCCHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHH-CCCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHH
Confidence 459999999999999999999999999988666655554 65 78999999999999999999999999999999999
Q ss_pred CHH-HHHHHHHHHHH---cCCcE---EEEeC--------CHHHHHHHhcccCCcEEEee--ccccccccccccccccccC
Q 015424 273 PDL-DIRYMTKICKL---LGLTA---LVEVH--------DEREMDRVLGIEGIELIGIN--NRNLAISIFSYRTETFEVD 335 (407)
Q Consensus 273 ~~~-~L~~Li~~a~~---LGL~a---LVEVh--------t~eElerAl~l~Ga~iIGIN--nRdL~~~~~~~t~~Tf~vD 335 (407)
++. .+.++.+...+ +.+++ .|.+| +..|+.+.+...|++-|-++ +|+. +...+|
T Consensus 108 ~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g---------~~~G~d 178 (233)
T PRK00748 108 KNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYTDISRDG---------TLSGPN 178 (233)
T ss_pred hCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEeeecCcC---------CcCCCC
Confidence 654 45545444211 24443 34444 33555444443388844444 4555 556689
Q ss_pred chhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcC-CCEEEEcccccCCCCh
Q 015424 336 NSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAG-VKAVLVGESIVKQDDP 393 (407)
Q Consensus 336 l~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~G-adaVLVGeaLmk~~dp 393 (407)
++...++.+. .++++|++|||.+++|+.++.+.| |+||+||++|+.+..+
T Consensus 179 ~~~i~~l~~~--------~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~~~~~ 229 (233)
T PRK00748 179 VEATRELAAA--------VPIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYEGKFD 229 (233)
T ss_pred HHHHHHHHHh--------CCCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHcCCcC
Confidence 9888888764 247899999999999999999998 9999999999998643
No 19
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=99.74 E-value=3.7e-17 Score=154.88 Aligned_cols=183 Identities=19% Similarity=0.201 Sum_probs=145.9
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEE------ecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEE
Q 015424 194 REDFDPVEIARSYEKGGAACLSIL------TDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLL 267 (407)
Q Consensus 194 ~~~~dp~~iA~ay~~~GA~aISVL------Td~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLL 267 (407)
....|+.++++.|.++|++|++|. +++.+ .|+...+..++.. +.+|..++++....+++.+|...|||+|.+
T Consensus 18 ~~~~d~~~~~~~~~~~g~~av~v~~~~~~~~~~~~-~~~~~~i~~~~~~-~~i~~p~~~~~~~~~~v~~a~~~Ga~~v~~ 95 (235)
T cd00958 18 PGLEDPEETVKLAAEGGADAVALTKGIARAYGREY-AGDIPLIVKLNGS-TSLSPKDDNDKVLVASVEDAVRLGADAVGV 95 (235)
T ss_pred ccccCHHHHHHHHHhcCCCEEEeChHHHHhccccc-CCCCcEEEEECCC-CCCCCCCCCchhhhcCHHHHHHCCCCEEEE
Confidence 345799999999999999999999 88887 4665566555543 556655899999999999999999999988
Q ss_pred eccCCCHH------HHHHHHHHHHHcCCcEEEEeCC----------HHHHHH----HhcccCCcEEEeeccccccccccc
Q 015424 268 IAAVLPDL------DIRYMTKICKLLGLTALVEVHD----------EREMDR----VLGIEGIELIGINNRNLAISIFSY 327 (407)
Q Consensus 268 iaaiL~~~------~L~~Li~~a~~LGL~aLVEVht----------~eEler----Al~l~Ga~iIGINnRdL~~~~~~~ 327 (407)
........ ++..+.+.|+.+|+..++|++. .+++.+ +.++ |||+|+++ +
T Consensus 96 ~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~-GaD~Ik~~---~------- 164 (235)
T cd00958 96 TVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAEL-GADIVKTK---Y------- 164 (235)
T ss_pred EEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHH-CCCEEEec---C-------
Confidence 77655432 6777888888999999999975 566666 7776 99999995 2
Q ss_pred cccccccCchhHHHHhhcccccccccCCceEEEeeCC--CCHHH----HHHHHHcCCCEEEEcccccCCCChHHHHHhhh
Q 015424 328 RTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGL--FTPDD----IAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 401 (407)
Q Consensus 328 t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI--~t~eD----~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~ 401 (407)
+ .|++...++.+.. .+++++.||| .|++| +..+.++|+++|++|++|++.+||.+.++.|.
T Consensus 165 --~---~~~~~~~~i~~~~--------~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~~dp~~~~~~~~ 231 (235)
T cd00958 165 --T---GDAESFKEVVEGC--------PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQRPDPVAMLRAIS 231 (235)
T ss_pred --C---CCHHHHHHHHhcC--------CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcCCCHHHHHHHHH
Confidence 1 2677778887652 2456777776 67766 89999999999999999999999999998875
Q ss_pred c
Q 015424 402 G 402 (407)
Q Consensus 402 ~ 402 (407)
.
T Consensus 232 ~ 232 (235)
T cd00958 232 A 232 (235)
T ss_pred H
Confidence 3
No 20
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=99.73 E-value=2.8e-17 Score=161.43 Aligned_cols=188 Identities=23% Similarity=0.283 Sum_probs=143.8
Q ss_pred HHHHHHHHHcCCcEEEEE----ecCCcCCC-----CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEecc
Q 015424 200 VEIARSYEKGGAACLSIL----TDEKYFKG-----SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA 270 (407)
Q Consensus 200 ~~iA~ay~~~GA~aISVL----Td~~~F~G-----s~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa 270 (407)
.+.|+..+++|+++|-+| .|..--+| ++++++.+|++ +++||+.|--|-+-..+....++|+|.|- .+
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~psd~~~~gg~~Rm~~p~~I~aIk~~-V~iPVigk~Righ~~Ea~~L~~~GvDiID--~T 103 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIEEIMDA-VSIPVMAKARIGHFVEAQILEALGVDYID--ES 103 (293)
T ss_pred HHHHHHHHHhChHHHHHccCCCchHhhcCCeeecCCHHHHHHHHHh-CCCCeEEeehhhHHHHHHHHHHcCCCEEe--cc
Confidence 367888888888877665 34444444 89999999997 99999976554444445555679999994 44
Q ss_pred -CCCHHHHHHHHHHHHH-cCCcEEEEeCCHHHHHHHhcccCCcEEEee------------------cccccccccccccc
Q 015424 271 -VLPDLDIRYMTKICKL-LGLTALVEVHDEREMDRVLGIEGIELIGIN------------------NRNLAISIFSYRTE 330 (407)
Q Consensus 271 -iL~~~~L~~Li~~a~~-LGL~aLVEVht~eElerAl~l~Ga~iIGIN------------------nRdL~~~~~~~t~~ 330 (407)
.+++ +.+++...+. ++...+.++.|.+|+.++..+ |+++|+.. +++. -...+||..
T Consensus 104 e~lrp--ad~~~~~~K~~f~~~fmad~~~l~EAlrai~~-GadmI~Ttge~gtg~v~~av~h~r~~~~~i-~~L~gyt~~ 179 (293)
T PRK04180 104 EVLTP--ADEEYHIDKWDFTVPFVCGARNLGEALRRIAE-GAAMIRTKGEAGTGNVVEAVRHMRQINGEI-RRLTSMSED 179 (293)
T ss_pred CCCCc--hHHHHHHHHHHcCCCEEccCCCHHHHHHHHHC-CCCeeeccCCCCCccHHHHHHHHHHHHHHH-HHHhCCCHH
Confidence 5665 3456666664 799999999999999999997 99999998 1110 113566665
Q ss_pred c-------cccCchhHHHHhhcccccccccCCceEE--EeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhh
Q 015424 331 T-------FEVDNSNTKKLLEGERGEIIRQKNIIVV--GESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 401 (407)
Q Consensus 331 T-------f~vDl~~t~~L~~~~~~~~i~~~~v~vV--AESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~ 401 (407)
+ ..+|++...++.+. ..+++| ++|||+||+|+..++++||++|+||++|++++||.+..+.|.
T Consensus 180 ~~~~~a~~~~~~~elL~ei~~~--------~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv 251 (293)
T PRK04180 180 ELYTAAKELQAPYELVKEVAEL--------GRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIV 251 (293)
T ss_pred HHHhhccccCCCHHHHHHHHHh--------CCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHH
Confidence 5 45788777777664 235665 999999999999999999999999999999999999888876
Q ss_pred c
Q 015424 402 G 402 (407)
Q Consensus 402 ~ 402 (407)
.
T Consensus 252 ~ 252 (293)
T PRK04180 252 E 252 (293)
T ss_pred H
Confidence 4
No 21
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=99.67 E-value=7.4e-15 Score=138.35 Aligned_cols=181 Identities=22% Similarity=0.249 Sum_probs=139.0
Q ss_pred CCCHHHHHHHHHHcCCcEEEEEecCCcCCCC---HHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCC
Q 015424 196 DFDPVEIARSYEKGGAACLSILTDEKYFKGS---FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (407)
Q Consensus 196 ~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs---~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (407)
..||.++|+.|.+.||++|+|++....|.|. .+.++.+++. +++||+..++|.++.++.++...|||.|++....+
T Consensus 28 ~~dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~-~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l 106 (234)
T cd04732 28 SDDPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKA-VGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAV 106 (234)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHh-cCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHH
Confidence 3599999999999999999999998887764 4556666665 78999999999999999999999999999999988
Q ss_pred CHHHHHHHHHHHHHcCCcEE-EE-----------------eCCHHHHHHHhcccCCcEEEeecccccccccccccccccc
Q 015424 273 PDLDIRYMTKICKLLGLTAL-VE-----------------VHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEV 334 (407)
Q Consensus 273 ~~~~L~~Li~~a~~LGL~aL-VE-----------------Vht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~v 334 (407)
.+.++ +.+.++.+|-+.+ +- -++..|+.+.+.-.|++.+-+..++--+ ..-..
T Consensus 107 ~dp~~--~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g-------~~~g~ 177 (234)
T cd04732 107 KNPEL--VKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDG-------TLSGP 177 (234)
T ss_pred hChHH--HHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCC-------ccCCC
Confidence 66544 6666677765322 21 2244455443432388988887664411 11236
Q ss_pred CchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChH
Q 015424 335 DNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPG 394 (407)
Q Consensus 335 Dl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~ 394 (407)
|++...++.+. .++++++.|||.+++|+.++.+.|+++|+||++|++.+.+.
T Consensus 178 ~~~~i~~i~~~--------~~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~~~~~~~ 229 (234)
T cd04732 178 NFELYKELAAA--------TGIPVIASGGVSSLDDIKALKELGVAGVIVGKALYEGKITL 229 (234)
T ss_pred CHHHHHHHHHh--------cCCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHHcCCCCH
Confidence 77777777654 35789999999999999999999999999999999998543
No 22
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=99.58 E-value=1.5e-13 Score=132.29 Aligned_cols=179 Identities=24% Similarity=0.325 Sum_probs=143.2
Q ss_pred CCCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHH---hcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCC
Q 015424 196 DFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVR---SAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (407)
Q Consensus 196 ~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr---~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (407)
..||.++|+.|.+.||..||+++...+|.|...|+..++ +. +++||.-...|++..++.....+|++.|.+.+..+
T Consensus 30 ~~~P~~~a~~~~~~Ga~~lHlVDLdgA~~g~~~n~~~i~~i~~~-~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av 108 (241)
T COG0106 30 SDDPLEVAKKWSDQGAEWLHLVDLDGAKAGGPRNLEAIKEILEA-TDVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAV 108 (241)
T ss_pred cCCHHHHHHHHHHcCCcEEEEeeccccccCCcccHHHHHHHHHh-CCCCEEeeCCcCCHHHHHHHHHCCCCEEEEeccee
Confidence 349999999999999999999999999999888877666 44 79999999999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHcC------CcE---------EEEeCC--HHHH-HHHhcccCCcEEEeecccccccccccccccccc
Q 015424 273 PDLDIRYMTKICKLLG------LTA---------LVEVHD--EREM-DRVLGIEGIELIGINNRNLAISIFSYRTETFEV 334 (407)
Q Consensus 273 ~~~~L~~Li~~a~~LG------L~a---------LVEVht--~eEl-erAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~v 334 (407)
.+.++ +.+.++.+| +++ |.|... ..|+ ++..+. |+.-|=++.-+--+ +--.+
T Consensus 109 ~~p~~--v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~-g~~~ii~TdI~~DG-------tl~G~ 178 (241)
T COG0106 109 KNPDL--VKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEV-GLAHILYTDISRDG-------TLSGP 178 (241)
T ss_pred cCHHH--HHHHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhc-CCCeEEEEeccccc-------ccCCC
Confidence 77665 777778775 222 666664 4444 444444 66544444332200 22348
Q ss_pred CchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHc-CCCEEEEcccccCCCCh
Q 015424 335 DNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEA-GVKAVLVGESIVKQDDP 393 (407)
Q Consensus 335 Dl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~-GadaVLVGeaLmk~~dp 393 (407)
|++.+.+|.+. .++++++.|||++.+|++++.+. |+.+++||+||+...-.
T Consensus 179 n~~l~~~l~~~--------~~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~g~~~ 230 (241)
T COG0106 179 NVDLVKELAEA--------VDIPVIASGGVSSLDDIKALKELSGVEGVIVGRALYEGKFT 230 (241)
T ss_pred CHHHHHHHHHH--------hCcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHhcCCCC
Confidence 99999999886 36899999999999999999999 99999999999998763
No 23
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.57 E-value=1.9e-13 Score=129.91 Aligned_cols=185 Identities=25% Similarity=0.313 Sum_probs=138.8
Q ss_pred CCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHH---hcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCC
Q 015424 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVR---SAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (407)
Q Consensus 197 ~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr---~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~ 273 (407)
.||.++|+.|.+.|++.+++.+-.....|...+...++ +. +++|+.....|.+..++..+..+|||.|.+.+..+.
T Consensus 32 ~~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~-~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~ 110 (241)
T PRK13585 32 GDPVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEA-VGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVE 110 (241)
T ss_pred CCHHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHH-cCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 48999999999999999999988777766555555554 54 689999988999999999999999999999999886
Q ss_pred HHHHHHHHHHHHHcCCcEE---EEeC---------------CHHH-HHHHhcccCCcEEEeecccccccccccccccccc
Q 015424 274 DLDIRYMTKICKLLGLTAL---VEVH---------------DERE-MDRVLGIEGIELIGINNRNLAISIFSYRTETFEV 334 (407)
Q Consensus 274 ~~~L~~Li~~a~~LGL~aL---VEVh---------------t~eE-lerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~v 334 (407)
+.++ +.+.++.+|=+.+ ++++ +..+ ++++.++ |++-|-+.+++--+ ..-.+
T Consensus 111 ~~~~--~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~-G~~~i~~~~~~~~g-------~~~g~ 180 (241)
T PRK13585 111 NPEI--VRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEEL-GAGSILFTNVDVEG-------LLEGV 180 (241)
T ss_pred ChHH--HHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHc-CCCEEEEEeecCCC-------CcCCC
Confidence 5443 4555555543222 2322 4444 4555554 88888777664311 11236
Q ss_pred CchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhh
Q 015424 335 DNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 400 (407)
Q Consensus 335 Dl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L 400 (407)
|++...++.+. .++++++.|||++++|+..+.++|+++|+||+++++.+..-..+...
T Consensus 181 ~~~~i~~i~~~--------~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~~~~~~~~~~~~ 238 (241)
T PRK13585 181 NTEPVKELVDS--------VDIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYKGKFTLEEAIEA 238 (241)
T ss_pred CHHHHHHHHHh--------CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhcCCcCHHHHHHH
Confidence 77777777664 25799999999999999999999999999999999998875554443
No 24
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=99.56 E-value=1.1e-13 Score=133.16 Aligned_cols=146 Identities=23% Similarity=0.294 Sum_probs=115.0
Q ss_pred HHHHHHHHhcCCCCcEEe----ccccCCHHH-HHHHHHcCCCEEEEeccCCC-HHHHHHHHHHHHHcCCcEEEEeCC---
Q 015424 227 FENLEAVRSAGVKCPLLC----KEFIVDAWQ-IYYARTKGADAVLLIAAVLP-DLDIRYMTKICKLLGLTALVEVHD--- 297 (407)
Q Consensus 227 ~edL~~Vr~a~v~lPVL~----KDFIid~~Q-I~eAr~~GADaVLLiaaiL~-~~~L~~Li~~a~~LGL~aLVEVht--- 297 (407)
++.++.+|+. +++|++. ++|+.++.+ +.++..+|||+|++...-++ .+++.++++.++++||++++++|.
T Consensus 63 ~~~v~~vr~~-~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~ 141 (244)
T PRK13125 63 WPLLEEVRKD-VSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFP 141 (244)
T ss_pred HHHHHHHhcc-CCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 8899999986 8999752 778788888 77789999999999754443 357889999999999999999996
Q ss_pred HHHHHHHhcc-cCCcEEEeeccccccccccccccccccCchh-HHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHH
Q 015424 298 EREMDRVLGI-EGIELIGINNRNLAISIFSYRTETFEVDNSN-TKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQE 375 (407)
Q Consensus 298 ~eElerAl~l-~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~-t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~ 375 (407)
.++++..++. .+.-++++|++.. .+|..++.. ..++.+. . ++..+++.|||+++++++.+.+
T Consensus 142 ~e~l~~~~~~~~~~l~msv~~~~g---------~~~~~~~~~~i~~lr~~------~-~~~~i~v~gGI~~~e~i~~~~~ 205 (244)
T PRK13125 142 DLLIHRLSKLSPLFIYYGLRPATG---------VPLPVSVERNIKRVRNL------V-GNKYLVVGFGLDSPEDARDALS 205 (244)
T ss_pred HHHHHHHHHhCCCEEEEEeCCCCC---------CCchHHHHHHHHHHHHh------c-CCCCEEEeCCcCCHHHHHHHHH
Confidence 6677877764 2223349998876 567777653 3334332 1 2346889999999999999999
Q ss_pred cCCCEEEEcccccC
Q 015424 376 AGVKAVLVGESIVK 389 (407)
Q Consensus 376 ~GadaVLVGeaLmk 389 (407)
+|||+|+||++||+
T Consensus 206 ~gaD~vvvGSai~~ 219 (244)
T PRK13125 206 AGADGVVVGTAFIE 219 (244)
T ss_pred cCCCEEEECHHHHH
Confidence 99999999999997
No 25
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=99.54 E-value=3.5e-13 Score=124.09 Aligned_cols=182 Identities=21% Similarity=0.277 Sum_probs=133.6
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccC--CHHHHHHHHHcCCCEEEEeccCCCHH
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIV--DAWQIYYARTKGADAVLLIAAVLPDL 275 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIi--d~~QI~eAr~~GADaVLLiaaiL~~~ 275 (407)
+..++++.+.++ +.+|-+-+ +-.-..+++.++.+|+...++|+.+---+. +.+++.+++.+|||.+++..... +.
T Consensus 14 ~~~~~~~~l~~~-i~~ieig~-~~~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~-~~ 90 (202)
T cd04726 14 EALELAKKVPDG-VDIIEAGT-PLIKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAP-LS 90 (202)
T ss_pred HHHHHHHHhhhc-CCEEEcCC-HHHHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCC-HH
Confidence 566788888887 77777621 111123478899998753588988632223 34678889999999999987653 34
Q ss_pred HHHHHHHHHHHcCCcEEE---EeCCHHHHHHHhcccCCcEEEeecccccccccccccccc--ccCchhHHHHhhcccccc
Q 015424 276 DIRYMTKICKLLGLTALV---EVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETF--EVDNSNTKKLLEGERGEI 350 (407)
Q Consensus 276 ~L~~Li~~a~~LGL~aLV---EVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf--~vDl~~t~~L~~~~~~~~ 350 (407)
.+.++++.+++.|+..++ ..+|.+|+.+++.. |+++++++. +++..++ ....+...++.+.
T Consensus 91 ~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~-~~d~v~~~~--------~~~~~~~~~~~~~~~i~~~~~~----- 156 (202)
T cd04726 91 TIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKL-GVDIVILHR--------GIDAQAAGGWWPEDDLKKVKKL----- 156 (202)
T ss_pred HHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHC-CCCEEEEcC--------cccccccCCCCCHHHHHHHHhh-----
Confidence 678899999999999986 45599999888886 999999951 1122343 2223333333221
Q ss_pred cccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhh
Q 015424 351 IRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 400 (407)
Q Consensus 351 i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L 400 (407)
.++++++.||| +++++..+.++|+|+++||++|++.+||.+.+++|
T Consensus 157 ---~~~~i~~~GGI-~~~~i~~~~~~Gad~vvvGsai~~~~d~~~~~~~~ 202 (202)
T cd04726 157 ---LGVKVAVAGGI-TPDTLPEFKKAGADIVIVGRAITGAADPAEAAREF 202 (202)
T ss_pred ---cCCCEEEECCc-CHHHHHHHHhcCCCEEEEeehhcCCCCHHHHHhcC
Confidence 35789999999 59999999999999999999999999999988764
No 26
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.54 E-value=5.6e-13 Score=128.27 Aligned_cols=188 Identities=19% Similarity=0.182 Sum_probs=137.8
Q ss_pred CCCHHHHHHHHHHcCCcEEEEEecCCcCCCCH---HHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCC
Q 015424 196 DFDPVEIARSYEKGGAACLSILTDEKYFKGSF---ENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (407)
Q Consensus 196 ~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~---edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (407)
..||.++|+.|++.||..|+|..-.....+.. +.++.+++. +++||.....|.+..++.++...|||+|.+....+
T Consensus 29 ~~d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~-~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l 107 (253)
T PRK02083 29 AGDPVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQ-VFIPLTVGGGIRSVEDARRLLRAGADKVSINSAAV 107 (253)
T ss_pred cCCHHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHh-CCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHh
Confidence 45999999999999999999987665433434 455555565 78999999999999999999999999999998888
Q ss_pred CHHHHHHHHHHHHHcC---CcEEEEeC---------------------C-HHHHHHHhcccCCcEEEeeccccccccccc
Q 015424 273 PDLDIRYMTKICKLLG---LTALVEVH---------------------D-EREMDRVLGIEGIELIGINNRNLAISIFSY 327 (407)
Q Consensus 273 ~~~~L~~Li~~a~~LG---L~aLVEVh---------------------t-~eElerAl~l~Ga~iIGINnRdL~~~~~~~ 327 (407)
.+.++ +.+.++.+| +-+-+++. + .+.++++.++ |++.|-++..+--+
T Consensus 108 ~~p~~--~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-g~~~ii~~~i~~~g----- 179 (253)
T PRK02083 108 ANPEL--ISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEEL-GAGEILLTSMDRDG----- 179 (253)
T ss_pred hCcHH--HHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHc-CCCEEEEcCCcCCC-----
Confidence 65443 555566665 22223321 2 3444666676 88877776533201
Q ss_pred cccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHc-CCCEEEEcccccCCCChHHHHHhhhc
Q 015424 328 RTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEA-GVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 328 t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~-GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
+.-.+|++...++.+. .++++|+.|||.+++|+..+.+. |+++|++|++|.......+.+++.+.
T Consensus 180 --~~~g~d~~~i~~~~~~--------~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~~~~~ 245 (253)
T PRK02083 180 --TKNGYDLELTRAVSDA--------VNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGELKAYLA 245 (253)
T ss_pred --CCCCcCHHHHHHHHhh--------CCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHHHHHHH
Confidence 2223577777776653 35799999999999999998875 99999999999988777766655544
No 27
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=99.53 E-value=5.9e-13 Score=123.50 Aligned_cols=184 Identities=20% Similarity=0.259 Sum_probs=133.6
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccc-cCC--HHHHHHHHHcCCCEEEEeccCCCH
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEF-IVD--AWQIYYARTKGADAVLLIAAVLPD 274 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDF-Iid--~~QI~eAr~~GADaVLLiaaiL~~ 274 (407)
+...+++.. .+|.+.|-|-| +-+....++-++.+|+...+.++.+ |+ +.| .||+.++..+|||.|..-+. .+.
T Consensus 13 ~a~~~~~~l-~~~v~~iev~~-~l~~~~g~~~i~~l~~~~~~~~i~~-d~k~~d~~~~~~~~~~~~Gad~i~vh~~-~~~ 88 (206)
T TIGR03128 13 EALELAEKV-ADYVDIIEIGT-PLIKNEGIEAVKEMKEAFPDRKVLA-DLKTMDAGEYEAEQAFAAGADIVTVLGV-ADD 88 (206)
T ss_pred HHHHHHHHc-ccCeeEEEeCC-HHHHHhCHHHHHHHHHHCCCCEEEE-EEeeccchHHHHHHHHHcCCCEEEEecc-CCH
Confidence 566788888 78888888821 1233446888888887523445553 43 234 46999999999999986543 355
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCH----HHHHHHhcccCCcEEEeeccccccccccccccccc-cCchhHHHHhhccccc
Q 015424 275 LDIRYMTKICKLLGLTALVEVHDE----REMDRVLGIEGIELIGINNRNLAISIFSYRTETFE-VDNSNTKKLLEGERGE 349 (407)
Q Consensus 275 ~~L~~Li~~a~~LGL~aLVEVht~----eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~-vDl~~t~~L~~~~~~~ 349 (407)
..+.++++.++++|+.+++++++. +++..+.++ |+++|++++ +|...++. ..++...++.+.+
T Consensus 89 ~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~-g~d~v~~~p--------g~~~~~~~~~~~~~i~~l~~~~--- 156 (206)
T TIGR03128 89 ATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKEL-GADYIGVHT--------GLDEQAKGQNPFEDLQTILKLV--- 156 (206)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHc-CCCEEEEcC--------CcCcccCCCCCHHHHHHHHHhc---
Confidence 567899999999999999998664 778888887 999999963 22223332 2333444554431
Q ss_pred ccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 350 IIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 350 ~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
+ .+.+...||| +++++..+.++|+++|++|++|++.+||.+.++.|..
T Consensus 157 ---~-~~~i~v~GGI-~~~n~~~~~~~Ga~~v~vGsai~~~~d~~~~~~~l~~ 204 (206)
T TIGR03128 157 ---K-EARVAVAGGI-NLDTIPDVIKLGPDIVIVGGAITKAADPAEAARQIRK 204 (206)
T ss_pred ---C-CCcEEEECCc-CHHHHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHHh
Confidence 1 3445558999 9999999999999999999999999999999988853
No 28
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=99.53 E-value=1.5e-12 Score=124.65 Aligned_cols=183 Identities=21% Similarity=0.191 Sum_probs=136.8
Q ss_pred CCCCCCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHH---hcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEec
Q 015424 193 LREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVR---SAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA 269 (407)
Q Consensus 193 i~~~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr---~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLia 269 (407)
+....||.++|+.|.+.||+.|+|++..... |...++..++ +. +.+||.....|.+..++..+..+||+.|.+.+
T Consensus 31 ~~~~~dp~~~a~~~~~~g~~~l~i~DLd~~~-~~~~n~~~i~~i~~~-~~~~v~vgGGir~~edv~~~l~~Ga~~viigt 108 (233)
T cd04723 31 LCSTSDPLDVARAYKELGFRGLYIADLDAIM-GRGDNDEAIRELAAA-WPLGLWVDGGIRSLENAQEWLKRGASRVIVGT 108 (233)
T ss_pred cccCCCHHHHHHHHHHCCCCEEEEEeCcccc-CCCccHHHHHHHHHh-CCCCEEEecCcCCHHHHHHHHHcCCCeEEEcc
Confidence 3434599999999999999999999998765 6666666555 43 67999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCC-cEE--EEeC-----------CHHHHHHHhcccCCcEEEeeccccccccccccccccccC
Q 015424 270 AVLPDLDIRYMTKICKLLGL-TAL--VEVH-----------DEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVD 335 (407)
Q Consensus 270 aiL~~~~L~~Li~~a~~LGL-~aL--VEVh-----------t~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vD 335 (407)
..+++ ++ +.+.++.+|= ..+ +++. +..|+.+.+... ++-+=+++-+-.+ +...+|
T Consensus 109 ~~~~~-~~--~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~di~~~G-------~~~g~~ 177 (233)
T cd04723 109 ETLPS-DD--DEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEELIVLDIDRVG-------SGQGPD 177 (233)
T ss_pred eeccc-hH--HHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHHHHHh-CCeEEEEEcCccc-------cCCCcC
Confidence 99987 55 5566666653 222 2222 355554444433 4434443333312 234578
Q ss_pred chhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHH
Q 015424 336 NSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKG 396 (407)
Q Consensus 336 l~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~ 396 (407)
++...++.+. .++++++.|||.+++|+..+.++|+++|+||++++...-+...
T Consensus 178 ~~~~~~i~~~--------~~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~g~~~~~~ 230 (233)
T cd04723 178 LELLERLAAR--------ADIPVIAAGGVRSVEDLELLKKLGASGALVASALHDGGLTLED 230 (233)
T ss_pred HHHHHHHHHh--------cCCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHcCCCCHHH
Confidence 8777787764 3679999999999999999999999999999999998655443
No 29
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=99.51 E-value=1.5e-12 Score=125.02 Aligned_cols=183 Identities=17% Similarity=0.197 Sum_probs=137.3
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCCCH---HHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCCH
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKGSF---ENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPD 274 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~---edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~ 274 (407)
||.++|+.|.+.||..|+|++..... |.. +.++.+.+. +++||.....|.+..++..+..+|||.|.+.++.+.+
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~-g~~~n~~~i~~i~~~-~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~ 110 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAF-GRGSNRELLAEVVGK-LDVKVELSGGIRDDESLEAALATGCARVNIGTAALEN 110 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccC-CCCccHHHHHHHHHH-cCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhCC
Confidence 99999999999999999999888665 544 444455555 7899999999999999999999999999999999876
Q ss_pred HHHHHHHHHHHHc------CCcE---EE------E-eCCHHHH-HHHhcccCCcEEEeeccccccccccccccccccCch
Q 015424 275 LDIRYMTKICKLL------GLTA---LV------E-VHDEREM-DRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNS 337 (407)
Q Consensus 275 ~~L~~Li~~a~~L------GL~a---LV------E-Vht~eEl-erAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~ 337 (407)
.++ +.+.++.+ ++++ .+ + ..+..|+ ++..++ |++-|-++.|+--++. -.+|++
T Consensus 111 p~l--~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~-G~~~iiv~~~~~~g~~-------~G~d~~ 180 (241)
T PRK14024 111 PEW--CARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSA-GCSRYVVTDVTKDGTL-------TGPNLE 180 (241)
T ss_pred HHH--HHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhc-CCCEEEEEeecCCCCc-------cCCCHH
Confidence 544 44444443 3333 11 1 1133444 444454 9999999888762211 135777
Q ss_pred hHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHH---cCCCEEEEcccccCCCChHHHHHhh
Q 015424 338 NTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQE---AGVKAVLVGESIVKQDDPGKGITGL 400 (407)
Q Consensus 338 ~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~---~GadaVLVGeaLmk~~dp~~~i~~L 400 (407)
...++.+. .++++++.|||.|++|+.++.+ .||+||+||++++.....-+.+.+.
T Consensus 181 ~i~~i~~~--------~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~~~~~~~~~~ 238 (241)
T PRK14024 181 LLREVCAR--------TDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGAFTLPEALAV 238 (241)
T ss_pred HHHHHHhh--------CCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCCCCHHHHHHH
Confidence 77777654 3579999999999999999864 4999999999999998877665543
No 30
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=99.51 E-value=1.5e-12 Score=124.13 Aligned_cols=188 Identities=20% Similarity=0.190 Sum_probs=138.3
Q ss_pred CCCHHHHHHHHHHcCCcEEEEEecCCcCCC---CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCC
Q 015424 196 DFDPVEIARSYEKGGAACLSILTDEKYFKG---SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (407)
Q Consensus 196 ~~dp~~iA~ay~~~GA~aISVLTd~~~F~G---s~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (407)
..||.++|+.|++.|+..|.++.-..-..+ .++.++.+++. +++||+.-..|.+..++......|||+|.+....+
T Consensus 26 ~~d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~-~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~ 104 (243)
T cd04731 26 AGDPVELAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEE-VFIPLTVGGGIRSLEDARRLLRAGADKVSINSAAV 104 (243)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCceEEECchhh
Confidence 349999999999999999998855432212 34556667775 78999999999999999999899999999998888
Q ss_pred CHHHHHHHHHHHHHcCCc---EEE---------------------EeCCHHHHHHHhcccCCcEEEeecccccccccccc
Q 015424 273 PDLDIRYMTKICKLLGLT---ALV---------------------EVHDEREMDRVLGIEGIELIGINNRNLAISIFSYR 328 (407)
Q Consensus 273 ~~~~L~~Li~~a~~LGL~---aLV---------------------EVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t 328 (407)
.+.++ +.+.++.++-+ +-+ +....+.+..+.++ |++.|-+..++--+
T Consensus 105 ~~p~~--~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~-G~d~i~v~~i~~~g------ 175 (243)
T cd04731 105 ENPEL--IREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEEL-GAGEILLTSMDRDG------ 175 (243)
T ss_pred hChHH--HHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHC-CCCEEEEeccCCCC------
Confidence 65443 44445555432 111 12233445666675 99988887654311
Q ss_pred ccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHc-CCCEEEEcccccCCCChHHHHHhhhc
Q 015424 329 TETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEA-GVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 329 ~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~-GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
+.-..|++...++.+. .++++++.|||++++|+..+.+. |+|+|+||++|..+....+.+++++.
T Consensus 176 -~~~g~~~~~i~~i~~~--------~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~~~~~~~~~~~ 241 (243)
T cd04731 176 -TKKGYDLELIRAVSSA--------VNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYTIAELKEYLA 241 (243)
T ss_pred -CCCCCCHHHHHHHHhh--------CCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCCCHHHHHHHHh
Confidence 1122467666676553 36799999999999999999987 99999999999999888777766654
No 31
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.51 E-value=1.2e-12 Score=125.78 Aligned_cols=174 Identities=13% Similarity=0.083 Sum_probs=130.1
Q ss_pred CCHHHHHHHHHH-cCCcEEEEEecCCcCCCCHHHHHHHH---hcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCC
Q 015424 197 FDPVEIARSYEK-GGAACLSILTDEKYFKGSFENLEAVR---SAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (407)
Q Consensus 197 ~dp~~iA~ay~~-~GA~aISVLTd~~~F~Gs~edL~~Vr---~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (407)
.||.++|+.|.+ .||+.|+|++....+.|...|+..|+ +. +++||.....|.+..++..+..+|||.|.+.+..+
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~-~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~ 109 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRL-TTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGI 109 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhh-cCCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHh
Confidence 389999999999 79999999999999888766665554 44 78999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcC------CcE---------EEEeCC--HHH-HHHHhcccCCcEEEeecccccccccccccccccc
Q 015424 273 PDLDIRYMTKICKLLG------LTA---------LVEVHD--ERE-MDRVLGIEGIELIGINNRNLAISIFSYRTETFEV 334 (407)
Q Consensus 273 ~~~~L~~Li~~a~~LG------L~a---------LVEVht--~eE-lerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~v 334 (407)
.+.++ +.+.++.+| +++ |.|-+. ..| +++..++ |+.-|=+++-+--+ +.-.+
T Consensus 110 ~~~~~--l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~-g~~~ii~tdi~~dG-------t~~G~ 179 (234)
T PRK13587 110 QDTDW--LKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDI-PLGGIIYTDIAKDG-------KMSGP 179 (234)
T ss_pred cCHHH--HHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHc-CCCEEEEecccCcC-------CCCcc
Confidence 76554 555555553 222 111111 133 3344444 65533333332201 33457
Q ss_pred CchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccC
Q 015424 335 DNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK 389 (407)
Q Consensus 335 Dl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk 389 (407)
|++...++.+. .+++++++|||.+++|+..+.++|+++|+||+++++
T Consensus 180 ~~~li~~l~~~--------~~ipvi~~GGi~s~edi~~l~~~G~~~vivG~a~~~ 226 (234)
T PRK13587 180 NFELTGQLVKA--------TTIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAHQ 226 (234)
T ss_pred CHHHHHHHHHh--------CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEhHHHHh
Confidence 88877888764 357899999999999999999999999999999998
No 32
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.45 E-value=4e-12 Score=123.35 Aligned_cols=175 Identities=22% Similarity=0.199 Sum_probs=132.5
Q ss_pred CCHHHHHHHHHHcCCcEEEEEecCCcCCCCH---HHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCC
Q 015424 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSF---ENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (407)
Q Consensus 197 ~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~---edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~ 273 (407)
.||.++|+.|.+.||..|+|..-.....|.. +.++.+.+. +++||.....|.+..++.+...+||+.|.+..+.+.
T Consensus 30 ~dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~-~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~ 108 (258)
T PRK01033 30 GDPINAVRIFNEKEVDELIVLDIDASKRGSEPNYELIENLASE-CFMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALE 108 (258)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHh-CCCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhc
Confidence 4999999999999999999998888776654 444555554 789999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHcC-------Cc----------EEE----EeC--CHHHH-HHHhcccCCcEEEeeccccccccccccc
Q 015424 274 DLDIRYMTKICKLLG-------LT----------ALV----EVH--DEREM-DRVLGIEGIELIGINNRNLAISIFSYRT 329 (407)
Q Consensus 274 ~~~L~~Li~~a~~LG-------L~----------aLV----EVh--t~eEl-erAl~l~Ga~iIGINnRdL~~~~~~~t~ 329 (407)
+.++ +.+.++.+| ++ +++ |.. +..|+ +++.++ |++-|-+++++--++..
T Consensus 109 ~~~~--~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~-g~~~ii~~~i~~~G~~~---- 181 (258)
T PRK01033 109 DPDL--ITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEAL-GAGEILLNSIDRDGTMK---- 181 (258)
T ss_pred CHHH--HHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHc-CCCEEEEEccCCCCCcC----
Confidence 6543 444444443 11 111 111 23344 555565 89989998776623222
Q ss_pred cccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHH-HcCCCEEEEcccccCC
Q 015424 330 ETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQ-EAGVKAVLVGESIVKQ 390 (407)
Q Consensus 330 ~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~-~~GadaVLVGeaLmk~ 390 (407)
.+|++...++.+. .++++|+.|||.+++|+..+. +.|++||+||++|.-.
T Consensus 182 ---G~d~~~i~~~~~~--------~~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~ 232 (258)
T PRK01033 182 ---GYDLELLKSFRNA--------LKIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFK 232 (258)
T ss_pred ---CCCHHHHHHHHhh--------CCCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeC
Confidence 2488777777654 358999999999999999998 7999999999999987
No 33
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=99.44 E-value=8.3e-12 Score=120.59 Aligned_cols=188 Identities=20% Similarity=0.205 Sum_probs=139.7
Q ss_pred CCCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHH---HHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCC
Q 015424 196 DFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEA---VRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (407)
Q Consensus 196 ~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~---Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (407)
..||.++|+.|.+.||+.|+|..-.....+...|+.. +++. +++||+....|.+..++.++..+|||.|.+..+.+
T Consensus 29 ~~dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~-~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~ 107 (254)
T TIGR00735 29 AGDPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAET-VFIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAV 107 (254)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHh-cCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHh
Confidence 4599999999999999999999777665555555554 4455 78999999999999999999999999999999988
Q ss_pred CHHHHHHHHHHHHHcCC-cEE--EEeC-----------------------CHHH-HHHHhcccCCcEEEeeccccccccc
Q 015424 273 PDLDIRYMTKICKLLGL-TAL--VEVH-----------------------DERE-MDRVLGIEGIELIGINNRNLAISIF 325 (407)
Q Consensus 273 ~~~~L~~Li~~a~~LGL-~aL--VEVh-----------------------t~eE-lerAl~l~Ga~iIGINnRdL~~~~~ 325 (407)
.+.++ +.+.++.+|= ... +++. +..+ +++..++ |++.|-++.++--+
T Consensus 108 ~~p~~--~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~-G~~~iivt~i~~~g--- 181 (254)
T TIGR00735 108 KNPEL--IYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKL-GAGEILLTSMDKDG--- 181 (254)
T ss_pred hChHH--HHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHc-CCCEEEEeCcCccc---
Confidence 66544 4455555652 222 2211 1223 3455555 89988886654411
Q ss_pred cccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcC-CCEEEEcccccCCCChHHHHHhhhc
Q 015424 326 SYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAG-VKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 326 ~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~G-adaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
+--.+|++...++.+. .++++++.|||.+++|+..+.+.| +++|++|++|.........+++.+.
T Consensus 182 ----~~~g~~~~~~~~i~~~--------~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~ 247 (254)
T TIGR00735 182 ----TKSGYDLELTKAVSEA--------VKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLA 247 (254)
T ss_pred ----CCCCCCHHHHHHHHHh--------CCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHH
Confidence 1233677777777654 357999999999999999999988 9999999999988776666655544
No 34
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=99.44 E-value=1.1e-11 Score=121.35 Aligned_cols=179 Identities=20% Similarity=0.179 Sum_probs=132.9
Q ss_pred CCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCCH--
Q 015424 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPD-- 274 (407)
Q Consensus 197 ~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~-- 274 (407)
.||.++|+.|++.||..|||+....-...+.+-+..+++ +++||-....|.+ .|+..+..+|||.|.|.+.++.+
T Consensus 43 ~dP~~~A~~~~~~Ga~~lHvVDLdgg~~~n~~~i~~i~~--~~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~Av~~~~ 119 (262)
T PLN02446 43 KSAAEFAEMYKRDGLTGGHVIMLGADDASLAAALEALRA--YPGGLQVGGGVNS-ENAMSYLDAGASHVIVTSYVFRDGQ 119 (262)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHh--CCCCEEEeCCccH-HHHHHHHHcCCCEEEEchHHHhCCC
Confidence 589999999999999999999997633334444555554 5799999999995 99999999999999999998875
Q ss_pred --HHHHHHHHHHHHcC-------CcEE-------------EEeC--CHHH-HHHHhcccCCcEEEeeccccccccccccc
Q 015424 275 --LDIRYMTKICKLLG-------LTAL-------------VEVH--DERE-MDRVLGIEGIELIGINNRNLAISIFSYRT 329 (407)
Q Consensus 275 --~~L~~Li~~a~~LG-------L~aL-------------VEVh--t~eE-lerAl~l~Ga~iIGINnRdL~~~~~~~t~ 329 (407)
.++ +.+.++.+| +++- .|.. +..| +.+..+. |+.-|=+|.-+-=+
T Consensus 120 ~~p~~--v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~-g~~eii~TdI~rDG------- 189 (262)
T PLN02446 120 IDLER--LKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLAA-YCDEFLVHGVDVEG------- 189 (262)
T ss_pred CCHHH--HHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHHh-CCCEEEEEEEcCCC-------
Confidence 444 555556654 3332 1211 3455 4666665 77655555444311
Q ss_pred cccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHc--CCCEEEEcccc--cCCCChHHH
Q 015424 330 ETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEA--GVKAVLVGESI--VKQDDPGKG 396 (407)
Q Consensus 330 ~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~--GadaVLVGeaL--mk~~dp~~~ 396 (407)
+-..+|++.+.++.+. .++++|+.|||.+.+|+.++.++ |+.+++||+|| +...-..+.
T Consensus 190 tl~G~d~el~~~l~~~--------~~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl~~y~g~~~l~e 252 (262)
T PLN02446 190 KRLGIDEELVALLGEH--------SPIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSALDIFGGNLPYDD 252 (262)
T ss_pred cccCCCHHHHHHHHhh--------CCCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeHHHhCCCccHHH
Confidence 3345899999898775 36899999999999999999998 58999999999 877654433
No 35
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.43 E-value=8.2e-12 Score=120.00 Aligned_cols=174 Identities=14% Similarity=0.116 Sum_probs=124.8
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcC--CCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCCHH
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAG--VKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDL 275 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~--v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~ 275 (407)
||.++|+.|.+.||..++|++....+ |...++..+++.. ...||.....|.+..++.++...|||.|.+.+..+.+.
T Consensus 31 dP~~~a~~~~~~ga~~lhivDLd~a~-~~~~n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~p 109 (232)
T PRK13586 31 NPIEIASKLYNEGYTRIHVVDLDAAE-GVGNNEMYIKEISKIGFDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTNF 109 (232)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCcC-CCcchHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhCCH
Confidence 99999999999999999999998876 5554555554320 23599999999999999999999999999999888665
Q ss_pred HHHHHHHHHHHcC-------CcE----------EEEeC-CHHHH-HHHhcccCCcEEEeeccccccccccccccccccCc
Q 015424 276 DIRYMTKICKLLG-------LTA----------LVEVH-DEREM-DRVLGIEGIELIGINNRNLAISIFSYRTETFEVDN 336 (407)
Q Consensus 276 ~L~~Li~~a~~LG-------L~a----------LVEVh-t~eEl-erAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl 336 (407)
++ +.+.++.+| +|+ |.|.. +..|+ ++..++ |+.=|=+++-+.-| +-..+|+
T Consensus 110 ~~--~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~~-g~~~ii~tdI~~dG-------t~~G~d~ 179 (232)
T PRK13586 110 NL--FHDIVREIGSNRVLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNEL-ELLGIIFTYISNEG-------TTKGIDY 179 (232)
T ss_pred HH--HHHHHHHhCCCCEEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHhc-CCCEEEEecccccc-------cCcCcCH
Confidence 44 444455553 333 33311 34444 344444 66544444444322 3344788
Q ss_pred hhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015424 337 SNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 391 (407)
Q Consensus 337 ~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 391 (407)
+....+... .+ ++++.|||.+.+|+.++.++|++|++||+||+...
T Consensus 180 el~~~~~~~--------~~-~viasGGv~s~~Dl~~l~~~G~~gvivg~Aly~g~ 225 (232)
T PRK13586 180 NVKDYARLI--------RG-LKEYAGGVSSDADLEYLKNVGFDYIIVGMAFYLGK 225 (232)
T ss_pred HHHHHHHhC--------CC-CEEEECCCCCHHHHHHHHHCCCCEEEEehhhhcCc
Confidence 776666442 23 37889999999999999999999999999998653
No 36
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.43 E-value=1.5e-11 Score=118.86 Aligned_cols=186 Identities=19% Similarity=0.192 Sum_probs=137.2
Q ss_pred CCCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhc--CCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCC
Q 015424 196 DFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSA--GVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (407)
Q Consensus 196 ~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a--~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~ 273 (407)
..||.++|+.|.+.||..|+|++....+.|...|+..+++. .+ .||.....|.+..++..+..+|||.|.+.+..+.
T Consensus 29 ~~dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~ 107 (241)
T PRK14114 29 EKDPAELVEKLIEEGFTLIHVVDLSKAIENSVENLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLE 107 (241)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEECCCcccCCcchHHHHHHHHhhc-CcEEEecCCCCHHHHHHHHHCCCCEEEECchhhC
Confidence 34999999999999999999999999999988777666532 14 7999999999999999999999999999999886
Q ss_pred HHH-HHHHHHHHHH--cCCcE---------EEEeC--CHHH-HHHHhcccCCcEEEeeccccccccccccccccccCchh
Q 015424 274 DLD-IRYMTKICKL--LGLTA---------LVEVH--DERE-MDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSN 338 (407)
Q Consensus 274 ~~~-L~~Li~~a~~--LGL~a---------LVEVh--t~eE-lerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~ 338 (407)
+.+ ++++.++..+ +++|+ |.|.. +..| ++++.++ |+.-|=+++-+.-| +--.+|++.
T Consensus 108 ~p~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~-g~~~ii~tdI~rdG-------t~~G~d~el 179 (241)
T PRK14114 108 DPSFLKFLKEIDVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEY-GLEEIVHTEIEKDG-------TLQEHDFSL 179 (241)
T ss_pred CHHHHHHHHHhCCCEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhc-CCCEEEEEeechhh-------cCCCcCHHH
Confidence 654 4334221111 22332 33333 2333 4555555 77655555444411 223478888
Q ss_pred HHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHc-----C-CCEEEEcccccCCCChHHHHH
Q 015424 339 TKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEA-----G-VKAVLVGESIVKQDDPGKGIT 398 (407)
Q Consensus 339 t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~-----G-adaVLVGeaLmk~~dp~~~i~ 398 (407)
..++.+. .++++|+.||+.+.+|+.++.++ | ++|++||+||+...-..+.+.
T Consensus 180 ~~~l~~~--------~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al~~g~i~~~e~~ 237 (241)
T PRK14114 180 TRKIAIE--------AEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAFLEGILTVEVMK 237 (241)
T ss_pred HHHHHHH--------CCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHHHCCCCCHHHHH
Confidence 8888764 36799999999999999999997 6 999999999999876655443
No 37
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=99.42 E-value=1.9e-11 Score=115.93 Aligned_cols=173 Identities=23% Similarity=0.202 Sum_probs=128.4
Q ss_pred CCCHHHHHHHHHHcCCcEEEEEecCCcCCC---CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCC
Q 015424 196 DFDPVEIARSYEKGGAACLSILTDEKYFKG---SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (407)
Q Consensus 196 ~~dp~~iA~ay~~~GA~aISVLTd~~~F~G---s~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (407)
..||.++|+.|.+.|+..|.|..-..-..| +++.++.+++. +++||+....|.+..++.++...|||.|.+..+.+
T Consensus 29 ~~dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~~~~~~i~~~-~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l 107 (232)
T TIGR03572 29 IGDPVNAARIYNAKGADELIVLDIDASKRGREPLFELISNLAEE-CFMPLTVGGGIRSLEDAKKLLSLGADKVSINTAAL 107 (232)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCHHHHHHHHHh-CCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHh
Confidence 349999999999999999999877766545 34455666665 78999999999999999999899999999999998
Q ss_pred CHHHHHHHHHHHHHcCCc-E--EEEeC----------------------CHHHHHHHhcccCCcEEEeeccccccccccc
Q 015424 273 PDLDIRYMTKICKLLGLT-A--LVEVH----------------------DEREMDRVLGIEGIELIGINNRNLAISIFSY 327 (407)
Q Consensus 273 ~~~~L~~Li~~a~~LGL~-a--LVEVh----------------------t~eElerAl~l~Ga~iIGINnRdL~~~~~~~ 327 (407)
.+.++ +.+..+.+|-. . =+++. ..+.++++.+. |++.|-+..++--+
T Consensus 108 ~~~~~--~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-G~d~i~i~~i~~~g----- 179 (232)
T TIGR03572 108 ENPDL--IEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQL-GAGEILLNSIDRDG----- 179 (232)
T ss_pred cCHHH--HHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHc-CCCEEEEeCCCccC-----
Confidence 76543 44444444432 1 11111 13444555565 89988887754311
Q ss_pred cccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHH-HHHcCCCEEEEcccc
Q 015424 328 RTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAY-VQEAGVKAVLVGESI 387 (407)
Q Consensus 328 t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~-l~~~GadaVLVGeaL 387 (407)
+.-.+|++...++.+. .++++++.|||++++|+.+ +.+.||++|+||++|
T Consensus 180 --~~~g~~~~~~~~i~~~--------~~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 180 --TMKGYDLELIKTVSDA--------VSIPVIALGGAGSLDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred --CcCCCCHHHHHHHHhh--------CCCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence 1233577777777654 2578999999999999999 889999999999987
No 38
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=99.40 E-value=1.1e-11 Score=114.51 Aligned_cols=178 Identities=22% Similarity=0.284 Sum_probs=124.6
Q ss_pred CCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHh---c--CCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccC
Q 015424 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRS---A--GVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV 271 (407)
Q Consensus 197 ~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~---a--~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaai 271 (407)
.+..+..+...++|+++|++- ... ....+.+..+++ . ..++|++..| .+..+..+|||+|++....
T Consensus 21 ~~~~~~~~~~~~~gv~~v~lr-~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~a~~~gad~vh~~~~~ 91 (212)
T PRK00043 21 RDLLEVVEAALEGGVTLVQLR-EKG--LDTRERLELARALKELCRRYGVPLIVND------RVDLALAVGADGVHLGQDD 91 (212)
T ss_pred ccHHHHHHHHHhcCCCEEEEe-CCC--CCHHHHHHHHHHHHHHHHHhCCeEEEeC------hHHHHHHcCCCEEecCccc
Confidence 357777888888999999773 222 122334333332 1 1456776654 3566888999999997654
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccc-c--ccCchhHHHHhhcccc
Q 015424 272 LPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTET-F--EVDNSNTKKLLEGERG 348 (407)
Q Consensus 272 L~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~T-f--~vDl~~t~~L~~~~~~ 348 (407)
.... ..+..+..|+.+-+.+||.+|+.++... |+++|++.... +..++. . ...++...++.+.
T Consensus 92 ~~~~----~~~~~~~~~~~~g~~~~t~~e~~~a~~~-gaD~v~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~--- 157 (212)
T PRK00043 92 LPVA----DARALLGPDAIIGLSTHTLEEAAAALAA-GADYVGVGPIF------PTPTKKDAKAPQGLEGLREIRAA--- 157 (212)
T ss_pred CCHH----HHHHHcCCCCEEEEeCCCHHHHHHHhHc-CCCEEEECCcc------CCCCCCCCCCCCCHHHHHHHHHh---
Confidence 4332 2233445677788899999999999997 99999985322 221121 1 1225666666553
Q ss_pred cccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 349 EIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 349 ~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
+ +++++++.||| +++++..+.++|+++|.+|++|++.+||.+.+++|..
T Consensus 158 --~--~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~~ 206 (212)
T PRK00043 158 --V--GDIPIVAIGGI-TPENAPEVLEAGADGVAVVSAITGAEDPEAAARALLA 206 (212)
T ss_pred --c--CCCCEEEECCc-CHHHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHHHHH
Confidence 1 24789999999 7999999999999999999999999999999998864
No 39
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=99.40 E-value=1.2e-12 Score=124.90 Aligned_cols=180 Identities=23% Similarity=0.244 Sum_probs=128.2
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHH---hcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccC
Q 015424 195 EDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVR---SAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV 271 (407)
Q Consensus 195 ~~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr---~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaai 271 (407)
...||.++|+.|.+.||..++|++....+.|...|+..++ +. +.+||.....|.+..++.+...+|||.|++.+..
T Consensus 27 ~~~dP~~~a~~~~~~g~~~l~ivDLdaa~~g~~~n~~~i~~i~~~-~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~ 105 (229)
T PF00977_consen 27 YSGDPVEVAKAFNEQGADELHIVDLDAAKEGRGSNLELIKEIAKE-TGIPIQVGGGIRSIEDAERLLDAGADRVVIGTEA 105 (229)
T ss_dssp ECCCHHHHHHHHHHTT-SEEEEEEHHHHCCTHHHHHHHHHHHHHH-SSSEEEEESSE-SHHHHHHHHHTT-SEEEESHHH
T ss_pred ECcCHHHHHHHHHHcCCCEEEEEEccCcccCchhHHHHHHHHHhc-CCccEEEeCccCcHHHHHHHHHhCCCEEEeChHH
Confidence 4569999999999999999999999988888777776665 44 6799999999999999999999999999999988
Q ss_pred CCH-HHHHHHHHHHHH----cCCcEEE-------------EeCCHHHHHHHhcccCCcEEEeeccccccccccccccccc
Q 015424 272 LPD-LDIRYMTKICKL----LGLTALV-------------EVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFE 333 (407)
Q Consensus 272 L~~-~~L~~Li~~a~~----LGL~aLV-------------EVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~ 333 (407)
+.+ +-++++.+..-. +++++.- ++.-.+-++++.++ |+.-|=++.-+--| +--.
T Consensus 106 ~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~-g~~~ii~tdi~~dG-------t~~G 177 (229)
T PF00977_consen 106 LEDPELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEEL-GAGEIILTDIDRDG-------TMQG 177 (229)
T ss_dssp HHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHT-T-SEEEEEETTTTT-------TSSS
T ss_pred hhchhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhc-CCcEEEEeeccccC-------CcCC
Confidence 854 334444433211 1233322 12223335566665 77755555444312 2334
Q ss_pred cCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015424 334 VDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 391 (407)
Q Consensus 334 vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 391 (407)
+|++...++.+. .++++|+.|||.+.+|+.++.+.|++||+||++|+.+.
T Consensus 178 ~d~~~~~~l~~~--------~~~~viasGGv~~~~Dl~~l~~~G~~gvivg~al~~g~ 227 (229)
T PF00977_consen 178 PDLELLKQLAEA--------VNIPVIASGGVRSLEDLRELKKAGIDGVIVGSALHEGK 227 (229)
T ss_dssp --HHHHHHHHHH--------HSSEEEEESS--SHHHHHHHHHTTECEEEESHHHHTTS
T ss_pred CCHHHHHHHHHH--------cCCCEEEecCCCCHHHHHHHHHCCCcEEEEehHhhCCc
Confidence 788888888765 26799999999999999999999999999999998753
No 40
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=99.40 E-value=9.6e-13 Score=124.59 Aligned_cols=192 Identities=23% Similarity=0.258 Sum_probs=139.0
Q ss_pred HHHHHHHHHcCCcEEEEEe----cCCcCCC-----CHHHHHHHHhcCCCCcEEeccccCC--HHHHHHHHHcCCCEEEEe
Q 015424 200 VEIARSYEKGGAACLSILT----DEKYFKG-----SFENLEAVRSAGVKCPLLCKEFIVD--AWQIYYARTKGADAVLLI 268 (407)
Q Consensus 200 ~~iA~ay~~~GA~aISVLT----d~~~F~G-----s~edL~~Vr~a~v~lPVL~KDFIid--~~QI~eAr~~GADaVLLi 268 (407)
.++|+..+++||+++.+|. |-..-+| ++..++.|+++ |++||+.|--|=+ +.||.|+ .|.|+|--
T Consensus 31 ~eQA~iAE~aGACaVmalervPadiR~~GgV~RMsDP~mIKei~~a-VsiPVMAk~RiGHFVEAQIlE~--l~vDYiDE- 106 (296)
T KOG1606|consen 31 AEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPRMIKEIKNA-VSIPVMAKVRIGHFVEAQILEA--LGVDYIDE- 106 (296)
T ss_pred HHHHHHHHhcCcceEeeeccCCHhHHhcCCeeecCCHHHHHHHHHh-ccchhhhhhhhhhhhHHHHHHH--hccCccch-
Confidence 3799999999999998874 2333333 78899999987 9999999876633 5689887 79999865
Q ss_pred ccCCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeecccccccccc----------------ccc---
Q 015424 269 AAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFS----------------YRT--- 329 (407)
Q Consensus 269 aaiL~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~----------------~t~--- 329 (407)
..+|++.|....++. +.+....++-+.|.-|+.|-+. +||.+|-+..- . +||-- +.+
T Consensus 107 SEvlt~AD~~hhI~K-hnFkvPFvCG~rdlGEALRRI~-EGAAMIRtkGe-a-gTG~v~EaVkhvr~i~geir~~~~m~~ 182 (296)
T KOG1606|consen 107 SEVLTPADWDHHIEK-HNFKVPFVCGCRDLGEALRRIR-EGAAMIRTKGE-A-GTGDVSEAVKHVRSINGEIRVLKNMDD 182 (296)
T ss_pred hhhcccccccchhhh-hcCcCceeeccccHHHHHHHHh-hchhhheeccc-c-CCCcHHHHHHHHHHHHHHHHHHHcCCH
Confidence 668888888777764 7788999999999999999998 59999876432 1 11110 000
Q ss_pred ---cccccCchhHHHHhhcccc-cccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 330 ---ETFEVDNSNTKKLLEGERG-EIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 330 ---~Tf~vDl~~t~~L~~~~~~-~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
.||...+.....|+....+ .+ -.++-.+.||+.||.|+..++++|||||.||+.++++.||.+..+.++.
T Consensus 183 dev~t~Ak~i~aP~dLv~~t~q~Gr---lPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFks~dP~k~a~aiVq 256 (296)
T KOG1606|consen 183 DEVFTFAKEIAAPYDLVKQTKQLGR---LPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDPVKRARAIVQ 256 (296)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHcCC---CceEEecccCcCChhHHHHHHHcCCCeEEeccccccCCCHHHHHHHHHH
Confidence 0010111111122222111 11 1367789999999999999999999999999999999999998887764
No 41
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=99.39 E-value=2e-11 Score=115.33 Aligned_cols=185 Identities=15% Similarity=0.223 Sum_probs=139.5
Q ss_pred EEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcE-EeccccCCHHHHHHH
Q 015424 179 LIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPL-LCKEFIVDAWQIYYA 257 (407)
Q Consensus 179 vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPV-L~KDFIid~~QI~eA 257 (407)
+|+-+.-.++. +..+++++..++|..+|=|- ... .+..+.|+.+++. ...++ +-=.-++++.|+..|
T Consensus 12 ~~~v~r~~~~~--------~~~~~~~a~~~gGi~~iEvt-~~~--~~~~~~i~~l~~~-~~~~~~iGaGTV~~~~~~~~a 79 (206)
T PRK09140 12 LIAILRGITPD--------EALAHVGALIEAGFRAIEIP-LNS--PDPFDSIAALVKA-LGDRALIGAGTVLSPEQVDRL 79 (206)
T ss_pred EEEEEeCCCHH--------HHHHHHHHHHHCCCCEEEEe-CCC--ccHHHHHHHHHHH-cCCCcEEeEEecCCHHHHHHH
Confidence 55555444333 67789999999999998873 221 1456678877764 33343 334457999999999
Q ss_pred HHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCch
Q 015424 258 RTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNS 337 (407)
Q Consensus 258 r~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~ 337 (407)
+.+|||.+++-. .-.++.+.++..|+..+..|||.+|+..|.++ |+++|++ + .+-.+.++
T Consensus 80 ~~aGA~fivsp~------~~~~v~~~~~~~~~~~~~G~~t~~E~~~A~~~-Gad~vk~----F---------pa~~~G~~ 139 (206)
T PRK09140 80 ADAGGRLIVTPN------TDPEVIRRAVALGMVVMPGVATPTEAFAALRA-GAQALKL----F---------PASQLGPA 139 (206)
T ss_pred HHcCCCEEECCC------CCHHHHHHHHHCCCcEEcccCCHHHHHHHHHc-CCCEEEE----C---------CCCCCCHH
Confidence 999999998854 22346788889999999999999999999997 9999997 2 11223455
Q ss_pred hHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCC----CChHHHHHhhhc
Q 015424 338 NTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ----DDPGKGITGLFG 402 (407)
Q Consensus 338 ~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~----~dp~~~i~~L~~ 402 (407)
....+... + +.++++++.||| +++++..+.++|+++|.||++|++. +++.+..+++..
T Consensus 140 ~l~~l~~~-----~-~~~ipvvaiGGI-~~~n~~~~~~aGa~~vav~s~l~~~~~~~~~i~~~a~~~~~ 201 (206)
T PRK09140 140 GIKALRAV-----L-PPDVPVFAVGGV-TPENLAPYLAAGAAGFGLGSALYRPGQSAEEVAERARAFVA 201 (206)
T ss_pred HHHHHHhh-----c-CCCCeEEEECCC-CHHHHHHHHHCCCeEEEEehHhcccccChHHHHHHHHHHHH
Confidence 55566543 2 225899999999 9999999999999999999999987 777777777643
No 42
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=99.38 E-value=1.4e-11 Score=117.30 Aligned_cols=177 Identities=18% Similarity=0.143 Sum_probs=124.4
Q ss_pred CCCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHH--cCCCEEEEeccCCC
Q 015424 196 DFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYART--KGADAVLLIAAVLP 273 (407)
Q Consensus 196 ~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~--~GADaVLLiaaiL~ 273 (407)
..||.++|+.|.+.||+.|+|++..... |...|+..+++..-.+|+.....|.+..++..+.. .|||.|.+++..+.
T Consensus 35 ~~dP~~~a~~~~~~g~~~l~ivDLd~~~-~~~~n~~~i~~i~~~~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~~ 113 (221)
T TIGR00734 35 SSSPDDAAKVIEEIGARFIYIADLDRIV-GLGDNFSLLSKLSKRVELIADCGVRSPEDLETLPFTLEFASRVVVATETLD 113 (221)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEEccccc-CCcchHHHHHHHHhhCcEEEcCccCCHHHHHHHHhhhccceEEeecChhhC
Confidence 4599999999999999999999998865 77666666654311359999999999999887743 47999999999987
Q ss_pred HHHHHHHHHHHHHcCCcEE---EEeC----CHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcc
Q 015424 274 DLDIRYMTKICKLLGLTAL---VEVH----DEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGE 346 (407)
Q Consensus 274 ~~~L~~Li~~a~~LGL~aL---VEVh----t~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~ 346 (407)
+.++ +.+.+.-++|++- +-++ +..++...+...|+.+|- +.-+--+ +.-.+|++...++.+.
T Consensus 114 ~p~~--l~~~~~vvslD~~~g~v~~~g~~~~~~~~~~~~~~~g~~ii~-tdI~~dG-------t~~G~d~eli~~i~~~- 182 (221)
T TIGR00734 114 ITEL--LRECYTVVSLDFKEKFLDASGLFESLEEVRDFLNSFDYGLIV-LDIHSVG-------TMKGPNLELLTKTLEL- 182 (221)
T ss_pred CHHH--HHHhhhEEEEEeECCccccccccccHHHHHHHHHhcCCEEEE-EECCccc-------cCCCCCHHHHHHHHhh-
Confidence 6543 3333334455441 1111 344443332222554443 3222201 2345788888888764
Q ss_pred cccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015424 347 RGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 391 (407)
Q Consensus 347 ~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 391 (407)
.+++++++|||.+++|+.++.++|+++|+||++|+.+.
T Consensus 183 -------~~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~g~ 220 (221)
T TIGR00734 183 -------SEHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHKGK 220 (221)
T ss_pred -------CCCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhCCC
Confidence 35789999999999999999999999999999998753
No 43
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=99.38 E-value=2.4e-11 Score=112.52 Aligned_cols=161 Identities=21% Similarity=0.232 Sum_probs=123.5
Q ss_pred CCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCCHHH
Q 015424 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLD 276 (407)
Q Consensus 197 ~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~ 276 (407)
.+..++++++.++|+.+|-|-.... ...+.++.+++...++ .+.-+-+++..++.++..+|||.|++...
T Consensus 16 ~~~~~~~~~l~~~G~~~vev~~~~~---~~~~~i~~l~~~~~~~-~iGag~v~~~~~~~~a~~~Ga~~i~~p~~------ 85 (190)
T cd00452 16 EDALALAEALIEGGIRAIEITLRTP---GALEAIRALRKEFPEA-LIGAGTVLTPEQADAAIAAGAQFIVSPGL------ 85 (190)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCh---hHHHHHHHHHHHCCCC-EEEEEeCCCHHHHHHHHHcCCCEEEcCCC------
Confidence 4677899999999999999854432 3566777777641123 23445578899999999999999986532
Q ss_pred HHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCc
Q 015424 277 IRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNI 356 (407)
Q Consensus 277 L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v 356 (407)
..++.+.++.+|+..+++|.|.+|+.+|+++ |+++|++.+... ...+....+... + .++
T Consensus 86 ~~~~~~~~~~~~~~~i~gv~t~~e~~~A~~~-Gad~i~~~p~~~-------------~g~~~~~~l~~~-----~--~~~ 144 (190)
T cd00452 86 DPEVVKAANRAGIPLLPGVATPTEIMQALEL-GADIVKLFPAEA-------------VGPAYIKALKGP-----F--PQV 144 (190)
T ss_pred CHHHHHHHHHcCCcEECCcCCHHHHHHHHHC-CCCEEEEcCCcc-------------cCHHHHHHHHhh-----C--CCC
Confidence 2457888999999999999999999999997 999999843211 133334444332 1 257
Q ss_pred eEEEeeCCCCHHHHHHHHHcCCCEEEEcccccC
Q 015424 357 IVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK 389 (407)
Q Consensus 357 ~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk 389 (407)
++++.||| +++++..+.++|+++|.+|+.+++
T Consensus 145 p~~a~GGI-~~~n~~~~~~~G~~~v~v~s~i~~ 176 (190)
T cd00452 145 RFMPTGGV-SLDNAAEWLAAGVVAVGGGSLLPK 176 (190)
T ss_pred eEEEeCCC-CHHHHHHHHHCCCEEEEEchhcch
Confidence 99999999 999999999999999999999993
No 44
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.37 E-value=2.1e-11 Score=108.22 Aligned_cols=170 Identities=22% Similarity=0.223 Sum_probs=127.1
Q ss_pred CCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHH----HHHHHhcCCCCcEEeccccCCHHHHH-----HHHHcCCCEEEE
Q 015424 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFEN----LEAVRSAGVKCPLLCKEFIVDAWQIY-----YARTKGADAVLL 267 (407)
Q Consensus 197 ~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~ed----L~~Vr~a~v~lPVL~KDFIid~~QI~-----eAr~~GADaVLL 267 (407)
.++.++++.+.++|+.++.+.+-...+.+.... +..++.. +++|++...++.++++.. .++.+|+|+|.|
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l 90 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAE-TDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEI 90 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhh-cCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEE
Confidence 377899999999999999998876666655333 6666665 789999999998888854 688999999999
Q ss_pred eccCCC-HHHHHHHHHHHHHc--CCcEEEEeCCHHHHHHH--hcccCCcEEEeeccccccccccccccccccCc-----h
Q 015424 268 IAAVLP-DLDIRYMTKICKLL--GLTALVEVHDEREMDRV--LGIEGIELIGINNRNLAISIFSYRTETFEVDN-----S 337 (407)
Q Consensus 268 iaaiL~-~~~L~~Li~~a~~L--GL~aLVEVht~eElerA--l~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl-----~ 337 (407)
...... ...+.++++.+++. ++.+++.++...+...+ .+. |+++|.+.++.. .+...+. .
T Consensus 91 ~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~-g~d~i~~~~~~~---------~~~~~~~~~~~~~ 160 (200)
T cd04722 91 HGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEA-GVDEVGLGNGGG---------GGGGRDAVPIADL 160 (200)
T ss_pred eccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHc-CCCEEEEcCCcC---------CCCCccCchhHHH
Confidence 987653 12344455555554 89999999987776665 665 899999988866 2222111 1
Q ss_pred hHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcc
Q 015424 338 NTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGE 385 (407)
Q Consensus 338 ~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGe 385 (407)
....+.. ..++++++.|||++++++..+.++|+|+|.||+
T Consensus 161 ~~~~~~~--------~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 161 LLILAKR--------GSKVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred HHHHHHh--------cCCCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 1222211 135789999999999999999999999999995
No 45
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=99.37 E-value=5.3e-11 Score=107.40 Aligned_cols=176 Identities=24% Similarity=0.250 Sum_probs=123.6
Q ss_pred CCHHHHHHHHHHcCCcEEEEEecCCcCCCCHH----HHHHHHhc--CCCCcEEeccccCCHHHHHHHHHcCCCEEEEecc
Q 015424 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFE----NLEAVRSA--GVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA 270 (407)
Q Consensus 197 ~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~e----dL~~Vr~a--~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa 270 (407)
.+..+..+...++|+.+|++- ++ .+++. .+..+++. ..+++++..| . +..+..+|||+|++...
T Consensus 12 ~~~~~~l~~l~~~g~~~i~lr-~~---~~~~~~~~~~~~~i~~~~~~~~~~l~~~~----~--~~~a~~~g~~~vh~~~~ 81 (196)
T cd00564 12 EDLLEVVEAALKGGVTLVQLR-EK---DLSARELLELARALRELCRKYGVPLIIND----R--VDLALAVGADGVHLGQD 81 (196)
T ss_pred chHHHHHHHHHhcCCCEEEEe-CC---CCCHHHHHHHHHHHHHHHHHhCCeEEEeC----h--HHHHHHcCCCEEecCcc
Confidence 366778888888899999764 22 23332 23344432 1357777655 3 44588899999998765
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccc--cccCchhHHHHhhcccc
Q 015424 271 VLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTET--FEVDNSNTKKLLEGERG 348 (407)
Q Consensus 271 iL~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~T--f~vDl~~t~~L~~~~~~ 348 (407)
.+....+ +..+..++.+-+.+||.+|+.++... |+++|.+....- +.++.. ....++...++.+.
T Consensus 82 ~~~~~~~----~~~~~~~~~~g~~~~t~~~~~~~~~~-g~d~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--- 148 (196)
T cd00564 82 DLPVAEA----RALLGPDLIIGVSTHSLEEALRAEEL-GADYVGFGPVFP-----TPTKPGAGPPLGLELLREIAEL--- 148 (196)
T ss_pred cCCHHHH----HHHcCCCCEEEeeCCCHHHHHHHhhc-CCCEEEECCccC-----CCCCCCCCCCCCHHHHHHHHHh---
Confidence 4443333 33345678888889999999999997 999999865422 111111 12344555555432
Q ss_pred cccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhh
Q 015424 349 EIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 401 (407)
Q Consensus 349 ~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~ 401 (407)
.++++++.||| +++++..+.++|+++|.+|++|++.+||.+.+++|.
T Consensus 149 -----~~~pv~a~GGi-~~~~i~~~~~~Ga~~i~~g~~i~~~~~~~~~~~~l~ 195 (196)
T cd00564 149 -----VEIPVVAIGGI-TPENAAEVLAAGADGVAVISAITGADDPAAAARELL 195 (196)
T ss_pred -----CCCCEEEECCC-CHHHHHHHHHcCCCEEEEehHhhcCCCHHHHHHHHh
Confidence 35789999999 689999999999999999999999999999998874
No 46
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=99.35 E-value=1.3e-11 Score=117.46 Aligned_cols=173 Identities=24% Similarity=0.319 Sum_probs=124.3
Q ss_pred HHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHH------hcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCC
Q 015424 200 VEIARSYEKGGAACLSILTDEKYFKGSFENLEAVR------SAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (407)
Q Consensus 200 ~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr------~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~ 273 (407)
........++|+.++-.- +..- .+.+.+..++ +. -++|++..| .+++ |.+.|||+|+|...-++
T Consensus 24 ~~~ve~al~~Gv~~vQlR-~K~~--~~~~~~~~a~~~~~lc~~-~~v~liINd----~~dl--A~~~~AdGVHlGq~D~~ 93 (211)
T COG0352 24 LEWVEAALKGGVTAVQLR-EKDL--SDEEYLALAEKLRALCQK-YGVPLIIND----RVDL--ALAVGADGVHLGQDDMP 93 (211)
T ss_pred HHHHHHHHhCCCeEEEEe-cCCC--ChHHHHHHHHHHHHHHHH-hCCeEEecC----cHHH--HHhCCCCEEEcCCcccc
Confidence 567778888998766654 2221 1222233332 32 467877766 5555 77899999999988776
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccc--cCchhHHHHhhccccccc
Q 015424 274 DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFE--VDNSNTKKLLEGERGEII 351 (407)
Q Consensus 274 ~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~--vDl~~t~~L~~~~~~~~i 351 (407)
..+..++...-..+|+ -+||.+|+++|.++ |+++||+ ||+|+++++... ..++....+...
T Consensus 94 ~~~ar~~~~~~~iIG~----S~h~~eea~~A~~~-g~DYv~~------GpifpT~tK~~~~~~G~~~l~~~~~~------ 156 (211)
T COG0352 94 LAEARELLGPGLIIGL----STHDLEEALEAEEL-GADYVGL------GPIFPTSTKPDAPPLGLEGLREIREL------ 156 (211)
T ss_pred hHHHHHhcCCCCEEEe----ecCCHHHHHHHHhc-CCCEEEE------CCcCCCCCCCCCCccCHHHHHHHHHh------
Confidence 6555444433223454 59999999999997 8999999 577888776654 223333333222
Q ss_pred ccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 352 RQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 352 ~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
..+++|+.||| +++.+..+.++|+++|-|-++||...||.++.++|..
T Consensus 157 --~~iP~vAIGGi-~~~nv~~v~~~Ga~gVAvvsai~~a~d~~~a~~~~~~ 204 (211)
T COG0352 157 --VNIPVVAIGGI-NLENVPEVLEAGADGVAVVSAITSAADPAAAAKALRN 204 (211)
T ss_pred --CCCCEEEEcCC-CHHHHHHHHHhCCCeEEehhHhhcCCCHHHHHHHHHH
Confidence 23789999999 9999999999999999999999999999999999875
No 47
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=99.35 E-value=3.4e-11 Score=110.79 Aligned_cols=174 Identities=22% Similarity=0.252 Sum_probs=120.1
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCCCHH---HHHHHH---hcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccC
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFE---NLEAVR---SAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV 271 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~e---dL~~Vr---~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaai 271 (407)
+..+..+...++|+++|.+ .++.. ...+ .+..++ +. .+.|++..|+ +..|...|+|+|.|....
T Consensus 14 ~~~~~~~~~~~~g~~~v~l-R~~~~--~~~~~~~~~~~l~~~~~~-~~~~l~i~~~------~~la~~~g~~GvHl~~~~ 83 (196)
T TIGR00693 14 DLLNRVEAALKGGVTLVQL-RDKGS--NTRERLALAEKLQELCRR-YGVPFIVNDR------VDLALALGADGVHLGQDD 83 (196)
T ss_pred cHHHHHHHHHhcCCCEEEE-ecCCC--CHHHHHHHHHHHHHHHHH-hCCeEEEECH------HHHHHHcCCCEEecCccc
Confidence 4556666677789998854 33321 1112 222222 22 3678888773 345888999999997665
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeecccccccccccccccc---ccCchhHHHHhhcccc
Q 015424 272 LPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETF---EVDNSNTKKLLEGERG 348 (407)
Q Consensus 272 L~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf---~vDl~~t~~L~~~~~~ 348 (407)
++....+.+ ...+..+-++||+.+|+.++.++ |+++|++.+. +++.++.- ..+++...++.+.
T Consensus 84 ~~~~~~r~~----~~~~~~ig~s~h~~~e~~~a~~~-g~dyi~~~~v------~~t~~k~~~~~~~g~~~l~~~~~~--- 149 (196)
T TIGR00693 84 LPASEARAL----LGPDKIIGVSTHNLEELAEAEAE-GADYIGFGPI------FPTPTKKDPAPPAGVELLREIAAT--- 149 (196)
T ss_pred CCHHHHHHh----cCCCCEEEEeCCCHHHHHHHhHc-CCCEEEECCc------cCCCCCCCCCCCCCHHHHHHHHHh---
Confidence 554433222 23466778999999999999997 9999998432 33322221 2355566555443
Q ss_pred cccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhh
Q 015424 349 EIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 400 (407)
Q Consensus 349 ~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L 400 (407)
. .++++++.||| +++++..+.++|+++|.+|++|++.+||.+.+++|
T Consensus 150 --~--~~~pv~a~GGI-~~~~~~~~~~~G~~gva~~~~i~~~~dp~~~~~~l 196 (196)
T TIGR00693 150 --S--IDIPIVAIGGI-TLENAAEVLAAGADGVAVVSAIMQAADPKAAAKQL 196 (196)
T ss_pred --c--CCCCEEEECCc-CHHHHHHHHHcCCCEEEEhHHhhCCCCHHHHHHhC
Confidence 1 24789999999 69999999999999999999999999999998865
No 48
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=99.34 E-value=1e-10 Score=113.04 Aligned_cols=179 Identities=16% Similarity=0.052 Sum_probs=130.9
Q ss_pred CCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHH---HhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCC
Q 015424 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAV---RSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (407)
Q Consensus 197 ~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~V---r~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~ 273 (407)
.||.+.|+.|.+.|+..++|......+ |...|...+ .+. +.+||.....|.+..++..+..+|||.|.+.+..++
T Consensus 31 ~~p~~~a~~~~~~g~~~lhivDLd~a~-g~~~n~~~i~~i~~~-~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~ 108 (243)
T TIGR01919 31 GSLESAAKWWEQGGAEWIHLVDLDAAF-GGGNNEMMLEEVVKL-LVVVEELSGGRRDDSSLRAALTGGRARVNGGTAALE 108 (243)
T ss_pred CCHHHHHHHHHhCCCeEEEEEECCCCC-CCcchHHHHHHHHHH-CCCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhC
Confidence 389999999999999999999998887 655555544 454 679999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHc------CCcEE-------------EEeC-CHHHH-HHHhcccCCcEEEeecccccccccccccccc
Q 015424 274 DLDIRYMTKICKLL------GLTAL-------------VEVH-DEREM-DRVLGIEGIELIGINNRNLAISIFSYRTETF 332 (407)
Q Consensus 274 ~~~L~~Li~~a~~L------GL~aL-------------VEVh-t~eEl-erAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf 332 (407)
+.++ +.+.++.+ ++|+- .|.. +..|+ ++.... |+.-|=+++-+--| +--
T Consensus 109 ~p~~--~~~~~~~~g~~ivvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~~~-g~~~ii~tdI~~dG-------t~~ 178 (243)
T TIGR01919 109 NPWW--AAAVIRYGGDIVAVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLDSG-GCSRVVVTDSKKDG-------LSG 178 (243)
T ss_pred CHHH--HHHHHHHccccEEEEEEEecCCceEEEECCCeecCCCcHHHHHHHHHhC-CCCEEEEEecCCcc-------cCC
Confidence 6554 33444443 33331 1211 23333 444444 76655555444422 223
Q ss_pred ccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHH---cCCCEEEEcccccCCCChHH
Q 015424 333 EVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQE---AGVKAVLVGESIVKQDDPGK 395 (407)
Q Consensus 333 ~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~---~GadaVLVGeaLmk~~dp~~ 395 (407)
.+|++...++.+. .++++|+.||+.+.+|+.++.+ +|++||+||++|+.+.-.-+
T Consensus 179 G~d~~l~~~l~~~--------~~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~~g~i~~~ 236 (243)
T TIGR01919 179 GPNELLLEVVAAR--------TDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKLLYARFFTLE 236 (243)
T ss_pred CcCHHHHHHHHhh--------CCCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHHHHcCCCCHH
Confidence 4788888888764 3679999999999999999864 59999999999998875443
No 49
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.31 E-value=1.2e-10 Score=111.62 Aligned_cols=177 Identities=12% Similarity=0.130 Sum_probs=122.8
Q ss_pred CCHHHHHHHHHHcCCcEEEEEecCCcCCC---CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCC
Q 015424 197 FDPVEIARSYEKGGAACLSILTDEKYFKG---SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (407)
Q Consensus 197 ~dp~~iA~ay~~~GA~aISVLTd~~~F~G---s~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~ 273 (407)
.||.++|+.|.+. |..|+++.-.....| +++-++.+++. +++||.....|.+..++..+..+|||.|++..+.++
T Consensus 30 ~dp~~~a~~~~~~-~~~l~ivDldga~~g~~~n~~~i~~i~~~-~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~~ 107 (228)
T PRK04128 30 GDPVEIALRFSEY-VDKIHVVDLDGAFEGKPKNLDVVKNIIRE-TGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAFD 107 (228)
T ss_pred CCHHHHHHHHHHh-CCEEEEEECcchhcCCcchHHHHHHHHhh-CCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhcC
Confidence 3899999999998 999999887778888 45555666665 789999999999999999999999999999988885
Q ss_pred HHHHHHHHHHHHHcC-----CcE---------EEEeC--CHHHHHHHhcccCCcEEEeeccccccccccccccccccCch
Q 015424 274 DLDIRYMTKICKLLG-----LTA---------LVEVH--DEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNS 337 (407)
Q Consensus 274 ~~~L~~Li~~a~~LG-----L~a---------LVEVh--t~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~ 337 (407)
++-++ +.++.+| +++ |.|.. +..|+-+.++- .+.-|=+++-+--|+..| +|
T Consensus 108 ~~~l~---~~~~~~g~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~-~~~~ii~t~i~~dGt~~G-------~d-- 174 (228)
T PRK04128 108 LEFLE---KVTSEFEGITVSLDVKGGRIAVKGWLEESSIKVEDAYEMLKN-YVNRFIYTSIERDGTLTG-------IE-- 174 (228)
T ss_pred HHHHH---HHHHHcCCEEEEEEccCCeEecCCCeEcCCCCHHHHHHHHHH-HhCEEEEEeccchhcccC-------HH--
Confidence 44333 3344433 222 22322 22333222221 123333333333222222 22
Q ss_pred hHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHH
Q 015424 338 NTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGIT 398 (407)
Q Consensus 338 ~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~ 398 (407)
+|.+. + .++++|+.|||.+.+|+..+.+.|++||+||++|+...-+...++
T Consensus 175 ---~l~~~-----~--~~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~g~~~~~~~~ 225 (228)
T PRK04128 175 ---EIERF-----W--GDEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYEGRISLEELL 225 (228)
T ss_pred ---HHHHh-----c--CCCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhcCCcCHHHHH
Confidence 33332 1 257899999999999999999999999999999999887655443
No 50
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=99.29 E-value=4.2e-10 Score=103.96 Aligned_cols=190 Identities=19% Similarity=0.217 Sum_probs=126.7
Q ss_pred CHHHHHHHHHHcCCcEEEEE-ecCCcCCC---CHHHHHHHHhcCCCCcEEeccccCCH-HHHHHHHHcCCCEEEEeccCC
Q 015424 198 DPVEIARSYEKGGAACLSIL-TDEKYFKG---SFENLEAVRSAGVKCPLLCKEFIVDA-WQIYYARTKGADAVLLIAAVL 272 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVL-Td~~~F~G---s~edL~~Vr~a~v~lPVL~KDFIid~-~QI~eAr~~GADaVLLiaaiL 272 (407)
...+.++...++||+.|++. .|..|+++ +++-++.+|+. ++.|+..-=++.++ ..+..+..+|||+|.+-...
T Consensus 12 ~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~-~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~- 89 (210)
T TIGR01163 12 RLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKY-TDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEA- 89 (210)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhc-CCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCC-
Confidence 46678899999999999996 56666655 45677788765 67785421111223 34677889999998885432
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE--eCCHHHHHHHhcccCCcEEEeeccccccccccccccccccC-chhHHHHhhccccc
Q 015424 273 PDLDIRYMTKICKLLGLTALVE--VHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVD-NSNTKKLLEGERGE 349 (407)
Q Consensus 273 ~~~~L~~Li~~a~~LGL~aLVE--Vht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vD-l~~t~~L~~~~~~~ 349 (407)
.++....++.++.+|+...+- .|+..|..+.+.. +++.|.+-..+. +++..++... ++...++.+... .
T Consensus 90 -~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~-~~d~i~~~~~~~-----g~tg~~~~~~~~~~i~~i~~~~~-~ 161 (210)
T TIGR01163 90 -SEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLP-DVDLVLLMSVNP-----GFGGQKFIPDTLEKIREVRKMID-E 161 (210)
T ss_pred -chhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHh-hCCEEEEEEEcC-----CCCcccccHHHHHHHHHHHHHHH-h
Confidence 235567778888888886554 6676666555653 678877644332 2222233211 122222322210 0
Q ss_pred ccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhh
Q 015424 350 IIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 400 (407)
Q Consensus 350 ~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L 400 (407)
. ..++++++.||| +++++..+.+.|+|+++||++|+.++||.+++++|
T Consensus 162 -~-~~~~~i~v~GGI-~~env~~l~~~gad~iivgsai~~~~d~~~~~~~~ 209 (210)
T TIGR01163 162 -N-GLSILIEVDGGV-NDDNARELAEAGADILVAGSAIFGADDYKEVIRSL 209 (210)
T ss_pred -c-CCCceEEEECCc-CHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHh
Confidence 0 013578889999 58999999999999999999999999999999876
No 51
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=99.26 E-value=2.1e-11 Score=116.98 Aligned_cols=192 Identities=22% Similarity=0.254 Sum_probs=137.9
Q ss_pred HHHHHHHHHHcCCcEEEEE----ecCCcCCC-----CHHHHHHHHhcCCCCcEEeccccCCH--HHHHHHHHcCCCEEEE
Q 015424 199 PVEIARSYEKGGAACLSIL----TDEKYFKG-----SFENLEAVRSAGVKCPLLCKEFIVDA--WQIYYARTKGADAVLL 267 (407)
Q Consensus 199 p~~iA~ay~~~GA~aISVL----Td~~~F~G-----s~edL~~Vr~a~v~lPVL~KDFIid~--~QI~eAr~~GADaVLL 267 (407)
-.++|+..+++||.++..| .|-..-+| ++.-++.|..+ |++||+.|--|=+- .||.|+ .|.|.|--
T Consensus 29 n~EQA~IAE~aGAvAVMaLervPaDiR~aGGVaRMaDp~~i~eim~a-VsIPVMAKvRIGH~~EA~iLea--lgVD~IDE 105 (296)
T COG0214 29 NAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIEEIMDA-VSIPVMAKVRIGHFVEAQILEA--LGVDMIDE 105 (296)
T ss_pred CHHHHHHHHhcCceeEeehhhCcHHHHhccCccccCCHHHHHHHHHh-cccceeeeeecchhHHHHHHHH--hCCCcccc
Confidence 3479999999999999887 33344444 67778888887 99999999887554 467666 89999876
Q ss_pred eccCCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccc----------------cccc--
Q 015424 268 IAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIF----------------SYRT-- 329 (407)
Q Consensus 268 iaaiL~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~----------------~~t~-- 329 (407)
..+|++.|-..-+. -+++-...++-..|+-|+.|-+. +||.+|-...- ++||- -+++
T Consensus 106 -SEVLTPAD~~~Hi~-K~~FtVPFVcGarnLgEAlRRI~-EGAaMIRTKGE--aGTGnv~eAVrHmr~i~~eI~~l~~~~ 180 (296)
T COG0214 106 -SEVLTPADEEFHIN-KWKFTVPFVCGARNLGEALRRIS-EGAAMIRTKGE--AGTGNVVEAVRHMRKINGEIRRLQSMT 180 (296)
T ss_pred -ccccCCCchhhhcc-hhhcccceecCcCcHHHHHHHHh-hhHHHHhcCCC--CCCCcHHHHHHHHHHHHHHHHHHHccC
Confidence 67888877655554 35788888899999999999988 59988864221 11110 0000
Q ss_pred ----cccccCchhHHHHhhcccc-cccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhh
Q 015424 330 ----ETFEVDNSNTKKLLEGERG-EIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 401 (407)
Q Consensus 330 ----~Tf~vDl~~t~~L~~~~~~-~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~ 401 (407)
.+..-++....+|+..+.. .++ .++-.+.|||.||.|+..++++|||||.||+.|+|+.||.+..+.++
T Consensus 181 edel~~~Ak~~~~p~elv~~~~~~grL---PVvnFAAGGvATPADAALMM~LGadGVFVGSGIFKS~~P~~~A~AIV 254 (296)
T COG0214 181 EDELYVVAKELQAPYELVKEVAKLGRL---PVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKRAKAIV 254 (296)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHhCCC---CeEeecccCcCChhHHHHHHHhCCCeEEecccccCCCCHHHHHHHHH
Confidence 0111233333444443322 122 47889999999999999999999999999999999999998877665
No 52
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=99.26 E-value=1.8e-10 Score=111.51 Aligned_cols=186 Identities=22% Similarity=0.206 Sum_probs=126.8
Q ss_pred CCHHHHHHHHHHcCCcEEEEEecCCcC--CCCHHHHHHHHhcCCCCcEEe---ccccCCH-HHH-HHHHHc-CCCEEEEe
Q 015424 197 FDPVEIARSYEKGGAACLSILTDEKYF--KGSFENLEAVRSAGVKCPLLC---KEFIVDA-WQI-YYARTK-GADAVLLI 268 (407)
Q Consensus 197 ~dp~~iA~ay~~~GA~aISVLTd~~~F--~Gs~edL~~Vr~a~v~lPVL~---KDFIid~-~QI-~eAr~~-GADaVLLi 268 (407)
.++..+.++....|+..+-|-.-..-+ .|....+..++.. .+-+|- .-+--.+ ..+ ..||++ |-|-|=|=
T Consensus 20 ~s~~~~~~ai~aSg~~ivTva~rR~~~~~~~~~~~~~~i~~~--~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlE 97 (248)
T cd04728 20 PSPAIMKEAIEASGAEIVTVALRRVNIGDPGGESFLDLLDKS--GYTLLPNTAGCRTAEEAVRTARLAREALGTDWIKLE 97 (248)
T ss_pred CCHHHHHHHHHHhCCCEEEEEEEecccCCCCcchHHhhcccc--CCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 378889999999999988886544332 3444555556532 344441 1110111 111 125554 66766552
Q ss_pred c----cCCCHHHHHHHHHHHHHc---CCcEE-EEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHH
Q 015424 269 A----AVLPDLDIRYMTKICKLL---GLTAL-VEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTK 340 (407)
Q Consensus 269 a----aiL~~~~L~~Li~~a~~L---GL~aL-VEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~ 340 (407)
+ ..|- .|..++++.|+.| |+++| ++..|..++.+..++ |++.|..-. .+|+++.|.. +.+...
T Consensus 98 Vi~d~~~Ll-pd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~-G~~~vmPlg-~pIGsg~Gi~------~~~~I~ 168 (248)
T cd04728 98 VIGDDKTLL-PDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDA-GCAAVMPLG-SPIGSGQGLL------NPYNLR 168 (248)
T ss_pred EecCccccc-cCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHc-CCCEeCCCC-cCCCCCCCCC------CHHHHH
Confidence 2 1221 2578899999999 99999 999999999999998 999883311 4445444332 244444
Q ss_pred HHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhh
Q 015424 341 KLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 401 (407)
Q Consensus 341 ~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~ 401 (407)
.+.+. .+++||++|||.||+|+.+++++|||||+||++|+++.||..-.+.+.
T Consensus 169 ~I~e~--------~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~ 221 (248)
T cd04728 169 IIIER--------ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFK 221 (248)
T ss_pred HHHHh--------CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHH
Confidence 44432 358999999999999999999999999999999999999987666553
No 53
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=99.26 E-value=4.6e-11 Score=121.13 Aligned_cols=174 Identities=21% Similarity=0.212 Sum_probs=121.8
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCCCH-HHHH------HHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEecc
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKGSF-ENLE------AVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA 270 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~-edL~------~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa 270 (407)
+..+......++|+.+|..- ++ ..+. +.+. .+.+. .+.+++..|. +.-|...|||+|+|...
T Consensus 158 ~ll~~l~~al~~Gv~~VQLR-~K---~~~~~~~~~~a~~L~~l~~~-~~~~lIIND~------vdlAl~~~aDGVHLgq~ 226 (347)
T PRK02615 158 NLLEVVEAALKGGVTLVQYR-DK---TADDRQRLEEAKKLKELCHR-YGALFIVNDR------VDIALAVDADGVHLGQE 226 (347)
T ss_pred hHHHHHHHHHHcCCCEEEEC-CC---CCCHHHHHHHHHHHHHHHHH-hCCeEEEeCh------HHHHHHcCCCEEEeChh
Confidence 46677777888898877652 22 2222 2222 22222 3567776664 44588899999999876
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccc--cCchhHHHHhhcccc
Q 015424 271 VLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFE--VDNSNTKKLLEGERG 348 (407)
Q Consensus 271 iL~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~--vDl~~t~~L~~~~~~ 348 (407)
.++..+...++ ..+.-+-+-|||.+|+..|... |+|+||+ +|.|+++++... ..++....+...
T Consensus 227 dl~~~~aR~ll----g~~~iIG~S~Hs~~e~~~A~~~-GaDYI~l------GPvf~T~tKp~~~~~Gle~l~~~~~~--- 292 (347)
T PRK02615 227 DLPLAVARQLL----GPEKIIGRSTTNPEEMAKAIAE-GADYIGV------GPVFPTPTKPGKAPAGLEYLKYAAKE--- 292 (347)
T ss_pred hcCHHHHHHhc----CCCCEEEEecCCHHHHHHHHHc-CCCEEEE------CCCcCCCCCCCCCCCCHHHHHHHHHh---
Confidence 65543322221 1133445789999999999996 9999998 455666555432 345555555442
Q ss_pred cccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 349 EIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 349 ~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
..+++++.||| +++++..+..+|+++|.|+++||.++||.+.+++|..
T Consensus 293 -----~~iPv~AiGGI-~~~ni~~l~~~Ga~gVAvisaI~~a~dp~~~~~~l~~ 340 (347)
T PRK02615 293 -----APIPWFAIGGI-DKSNIPEVLQAGAKRVAVVRAIMGAEDPKQATQELLK 340 (347)
T ss_pred -----CCCCEEEECCC-CHHHHHHHHHcCCcEEEEeHHHhCCCCHHHHHHHHHH
Confidence 35789999999 6999999999999999999999999999999998865
No 54
>PLN02334 ribulose-phosphate 3-epimerase
Probab=99.24 E-value=7.9e-10 Score=105.24 Aligned_cols=199 Identities=19% Similarity=0.250 Sum_probs=131.3
Q ss_pred CCCcCCCCCC-CCHHHHHHHHHHcCCcEEEEEecCCcCCCC----HHHHHHHHhcCCCCcEEeccccCCHH-HHHHHHHc
Q 015424 187 SPSRGILRED-FDPVEIARSYEKGGAACLSILTDEKYFKGS----FENLEAVRSAGVKCPLLCKEFIVDAW-QIYYARTK 260 (407)
Q Consensus 187 SPSkG~i~~~-~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs----~edL~~Vr~a~v~lPVL~KDFIid~~-QI~eAr~~ 260 (407)
+|| .+..+ .+..+..+...++|+..|++---...|..+ ++.++.+|+. ++.|+-+.=.+.+|. -+..+..+
T Consensus 11 ~~s--~~~~~~~~l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~-~~~~~~vhlmv~~p~d~~~~~~~~ 87 (229)
T PLN02334 11 APS--ILSADFANLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKH-TDAPLDCHLMVTNPEDYVPDFAKA 87 (229)
T ss_pred Eee--hhhcCHHHHHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhc-CCCcEEEEeccCCHHHHHHHHHHc
Confidence 465 23333 466778888999999999996555445432 2578888875 666653332333343 36668899
Q ss_pred CCCEEEEecc-CCCHHHHHHHHHHHHHcCCcEEEEeC--CHHH-HHHHhcccCCcEEEeecccccccccccccccccc-C
Q 015424 261 GADAVLLIAA-VLPDLDIRYMTKICKLLGLTALVEVH--DERE-MDRVLGIEGIELIGINNRNLAISIFSYRTETFEV-D 335 (407)
Q Consensus 261 GADaVLLiaa-iL~~~~L~~Li~~a~~LGL~aLVEVh--t~eE-lerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~v-D 335 (407)
|||+|.+-.. .-+ +...+.++.++..|+.+-+-+| |..| ++..+...|+++|++-.-. +++++..+.. .
T Consensus 88 gad~v~vH~~q~~~-d~~~~~~~~i~~~g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v~-----pg~~~~~~~~~~ 161 (229)
T PLN02334 88 GASIFTFHIEQAST-IHLHRLIQQIKSAGMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSVE-----PGFGGQSFIPSM 161 (229)
T ss_pred CCCEEEEeeccccc-hhHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhccCCCEEEEEEEe-----cCCCccccCHHH
Confidence 9999944433 122 3456777888889998888887 5444 4444443129999873211 1122222322 2
Q ss_pred chhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 336 NSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 336 l~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
++...++.+. + .++.+++-||| +++++..+.++|+|+++||++|++.+||.+.+++|..
T Consensus 162 ~~~i~~~~~~-----~--~~~~I~a~GGI-~~e~i~~l~~aGad~vvvgsai~~~~d~~~~~~~l~~ 220 (229)
T PLN02334 162 MDKVRALRKK-----Y--PELDIEVDGGV-GPSTIDKAAEAGANVIVAGSAVFGAPDYAEVISGLRA 220 (229)
T ss_pred HHHHHHHHHh-----C--CCCcEEEeCCC-CHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHH
Confidence 3333333332 1 24578999999 8999999999999999999999999999999998864
No 55
>PRK00208 thiG thiazole synthase; Reviewed
Probab=99.23 E-value=3e-10 Score=110.12 Aligned_cols=187 Identities=20% Similarity=0.159 Sum_probs=126.3
Q ss_pred CCHHHHHHHHHHcCCcEEEEEecCCc-CCCCHHHHHHHHhcCCCCcEEe---ccccCCH-HHH-HHHHHc-CCCEEEEec
Q 015424 197 FDPVEIARSYEKGGAACLSILTDEKY-FKGSFENLEAVRSAGVKCPLLC---KEFIVDA-WQI-YYARTK-GADAVLLIA 269 (407)
Q Consensus 197 ~dp~~iA~ay~~~GA~aISVLTd~~~-F~Gs~edL~~Vr~a~v~lPVL~---KDFIid~-~QI-~eAr~~-GADaVLLia 269 (407)
-++..+.++....|+.-+-|-.-..- .++....+..+.. ..+.+|- .-+--++ ..+ ..||++ |-|-|=|=+
T Consensus 21 ~s~~~~~~ai~asg~~ivTvalrR~~~~~~~~~~~~~i~~--~~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEV 98 (250)
T PRK00208 21 PSPQVMQEAIEASGAEIVTVALRRVNLGQGGDNLLDLLPP--LGVTLLPNTAGCRTAEEAVRTARLAREALGTNWIKLEV 98 (250)
T ss_pred CCHHHHHHHHHHhCCCeEEEEEEeecCCCCcchHHhhccc--cCCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 37888999999999998887652211 1233445555553 2445551 1111111 111 125554 556665522
Q ss_pred c---CCCHHHHHHHHHHHHHc---CCcEE-EEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHH
Q 015424 270 A---VLPDLDIRYMTKICKLL---GLTAL-VEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKL 342 (407)
Q Consensus 270 a---iL~~~~L~~Li~~a~~L---GL~aL-VEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L 342 (407)
- -..-.|+.+.++.|+.| |+++| ++..|..++.+..++ |+++|-.- -.+|+++.|..+ .+..+.+
T Consensus 99 i~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~-G~~~vmPl-g~pIGsg~gi~~------~~~i~~i 170 (250)
T PRK00208 99 IGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEA-GCAAVMPL-GAPIGSGLGLLN------PYNLRII 170 (250)
T ss_pred ecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHc-CCCEeCCC-CcCCCCCCCCCC------HHHHHHH
Confidence 1 11123678899999999 99999 999999999999998 99998321 145565554432 3334444
Q ss_pred hhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhh
Q 015424 343 LEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 401 (407)
Q Consensus 343 ~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~ 401 (407)
.+. .+++||+++||++|+|+.+++++|||||+||++|++++||..-.+.+.
T Consensus 171 ~e~--------~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~ 221 (250)
T PRK00208 171 IEQ--------ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFK 221 (250)
T ss_pred HHh--------cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHH
Confidence 432 368999999999999999999999999999999999999987665553
No 56
>PLN02591 tryptophan synthase
Probab=99.22 E-value=7.7e-10 Score=107.72 Aligned_cols=147 Identities=14% Similarity=0.194 Sum_probs=103.3
Q ss_pred CHHHHHHHHhcCCCCcEEeccccCCHHH------HHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeC---
Q 015424 226 SFENLEAVRSAGVKCPLLCKEFIVDAWQ------IYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH--- 296 (407)
Q Consensus 226 s~edL~~Vr~a~v~lPVL~KDFIid~~Q------I~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVh--- 296 (407)
-++.++.+|+. .++|++.--+-.+-++ +.+++++|+|+|++- -|+.++..++.+.|+++||+.+.-|.
T Consensus 66 ~~~~~~~~r~~-~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~Gviip--DLP~ee~~~~~~~~~~~gl~~I~lv~Ptt 142 (250)
T PLN02591 66 VISMLKEVAPQ-LSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVP--DLPLEETEALRAEAAKNGIELVLLTTPTT 142 (250)
T ss_pred HHHHHHHHhcC-CCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeC--CCCHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 47788888865 7899765544333343 677899999998885 57778899999999999999988882
Q ss_pred CHHHHHHHhcccCCcEEEeecccccccccccccc--ccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHH
Q 015424 297 DEREMDRVLGIEGIELIGINNRNLAISIFSYRTE--TFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQ 374 (407)
Q Consensus 297 t~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~--Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~ 374 (407)
+.+-+.++.+. ...+|-.- +..|.|.. .+..++....+.++. . .+++++...||++++|++++.
T Consensus 143 ~~~ri~~ia~~-~~gFIY~V------s~~GvTG~~~~~~~~~~~~i~~vk~-----~--~~~Pv~vGFGI~~~e~v~~~~ 208 (250)
T PLN02591 143 PTERMKAIAEA-SEGFVYLV------SSTGVTGARASVSGRVESLLQELKE-----V--TDKPVAVGFGISKPEHAKQIA 208 (250)
T ss_pred CHHHHHHHHHh-CCCcEEEe------eCCCCcCCCcCCchhHHHHHHHHHh-----c--CCCceEEeCCCCCHHHHHHHH
Confidence 34446666665 33344221 11233322 233444443333332 1 467888999999999999999
Q ss_pred HcCCCEEEEcccccC
Q 015424 375 EAGVKAVLVGESIVK 389 (407)
Q Consensus 375 ~~GadaVLVGeaLmk 389 (407)
++|||||+||++|++
T Consensus 209 ~~GADGvIVGSalVk 223 (250)
T PLN02591 209 GWGADGVIVGSAMVK 223 (250)
T ss_pred hcCCCEEEECHHHHH
Confidence 999999999999987
No 57
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=99.21 E-value=4.9e-10 Score=109.26 Aligned_cols=168 Identities=17% Similarity=0.125 Sum_probs=119.4
Q ss_pred CH-HHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCCH--
Q 015424 198 DP-VEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPD-- 274 (407)
Q Consensus 198 dp-~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~-- 274 (407)
|| .++|+.|++.||..|||++.. ..+.+-+..+.+. +++||.....|.+ .++.....+|||.|.+...++++
T Consensus 38 ~pp~~~A~~~~~~Ga~~lHvVDLg---~~n~~~i~~i~~~-~~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~~~~ 112 (253)
T TIGR02129 38 KPSSYYAKLYKDDGVKGCHVIMLG---PNNDDAAKEALHA-YPGGLQVGGGIND-TNAQEWLDEGASHVIVTSWLFTKGK 112 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECC---CCcHHHHHHHHHh-CCCCEEEeCCcCH-HHHHHHHHcCCCEEEECcHHHhCCC
Confidence 56 999999999999999999981 1245555555565 7899999999986 99999999999999999988864
Q ss_pred ---HHHHHHHHHHHHc-------CCcEE--------------EEeC--CHH-HHHHHhcccCCcEEEeeccccccccccc
Q 015424 275 ---LDIRYMTKICKLL-------GLTAL--------------VEVH--DER-EMDRVLGIEGIELIGINNRNLAISIFSY 327 (407)
Q Consensus 275 ---~~L~~Li~~a~~L-------GL~aL--------------VEVh--t~e-ElerAl~l~Ga~iIGINnRdL~~~~~~~ 327 (407)
+.++++ ++.+ ++|+. .|.+ +.. |+.+.++. .+.-|=+|+-+-=|
T Consensus 113 i~~~~~~~i---~~~fG~~~IvvsiD~k~~~~g~~~V~~~GW~~~t~~~~~~e~~~~~~~-~~~~il~TdI~rDG----- 183 (253)
T TIGR02129 113 FDLKRLKEI---VSLVGKDRLIVDLSCRKTQDGRWIVAMNKWQTITDLELNAETLEELSK-YCDEFLIHAADVEG----- 183 (253)
T ss_pred CCHHHHHHH---HHHhCCCCEEEEEEEEEcCCCcEEEEECCCcccCCCChHHHHHHHHHh-hCCEEEEeeecccC-----
Confidence 344444 4444 33332 2222 222 33333332 24444444433311
Q ss_pred cccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHc--CCCEEEEcccccC
Q 015424 328 RTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEA--GVKAVLVGESIVK 389 (407)
Q Consensus 328 t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~--GadaVLVGeaLmk 389 (407)
+--.+|++.+.++.+. .++++|+.||+.+.+|+.++.+. |..++++|.||+.
T Consensus 184 --tl~G~dlel~~~l~~~--------~~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 184 --LCKGIDEELVSKLGEW--------SPIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSALDI 237 (253)
T ss_pred --ccccCCHHHHHHHHhh--------CCCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehHHH
Confidence 3345899999898775 46899999999999999999776 7788999999874
No 58
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.21 E-value=9.8e-10 Score=102.31 Aligned_cols=172 Identities=14% Similarity=0.129 Sum_probs=126.2
Q ss_pred eEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEE--eccccCCHHHHH
Q 015424 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL--CKEFIVDAWQIY 255 (407)
Q Consensus 178 ~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL--~KDFIid~~QI~ 255 (407)
.||+-+.-.+|. +..+++++..++|+.+|-+- +... +..+-+..+++. .|.+ .-..++...|+.
T Consensus 13 ~~~~v~r~~~~~--------~~~~~~~~~~~~Gv~~vqlr-~k~~--~~~e~~~~~~~~---~~~~~~g~gtvl~~d~~~ 78 (187)
T PRK07455 13 RAIAVIRAPDLE--------LGLQMAEAVAAGGMRLIEIT-WNSD--QPAELISQLREK---LPECIIGTGTILTLEDLE 78 (187)
T ss_pred CEEEEEEcCCHH--------HHHHHHHHHHHCCCCEEEEe-CCCC--CHHHHHHHHHHh---CCCcEEeEEEEEcHHHHH
Confidence 366666544443 66788999999999999874 3221 346667777764 2443 233455568899
Q ss_pred HHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccC
Q 015424 256 YARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVD 335 (407)
Q Consensus 256 eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vD 335 (407)
.|.++|||.|++.. ++. +..+.++..++..+.-|||.+|+.+|.+. |+++|++ + + +.+ -..
T Consensus 79 ~A~~~gAdgv~~p~--~~~----~~~~~~~~~~~~~i~G~~t~~e~~~A~~~-Gadyv~~----F-----p--t~~-~~G 139 (187)
T PRK07455 79 EAIAAGAQFCFTPH--VDP----ELIEAAVAQDIPIIPGALTPTEIVTAWQA-GASCVKV----F-----P--VQA-VGG 139 (187)
T ss_pred HHHHcCCCEEECCC--CCH----HHHHHHHHcCCCEEcCcCCHHHHHHHHHC-CCCEEEE----C-----c--CCc-ccC
Confidence 99999999998865 222 24567888899988999999999999997 9999998 3 1 111 123
Q ss_pred chhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015424 336 NSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 390 (407)
Q Consensus 336 l~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~ 390 (407)
++....+... + .++++++.||| |++++..+.++|+++|-||++|++.
T Consensus 140 ~~~l~~~~~~-----~--~~ipvvaiGGI-~~~n~~~~l~aGa~~vav~s~i~~~ 186 (187)
T PRK07455 140 ADYIKSLQGP-----L--GHIPLIPTGGV-TLENAQAFIQAGAIAVGLSGQLFPK 186 (187)
T ss_pred HHHHHHHHhh-----C--CCCcEEEeCCC-CHHHHHHHHHCCCeEEEEehhcccC
Confidence 4445555443 1 25899999999 9999999999999999999999975
No 59
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=99.20 E-value=2.6e-09 Score=99.63 Aligned_cols=192 Identities=18% Similarity=0.186 Sum_probs=121.3
Q ss_pred CHHHHHHHHHHcCCcEEEEEe-cCCcCCC---CHHHHHHHHhcCCCCcEEeccccCCHH-HHHHHHHcCCCEEEEeccCC
Q 015424 198 DPVEIARSYEKGGAACLSILT-DEKYFKG---SFENLEAVRSAGVKCPLLCKEFIVDAW-QIYYARTKGADAVLLIAAVL 272 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLT-d~~~F~G---s~edL~~Vr~a~v~lPVL~KDFIid~~-QI~eAr~~GADaVLLiaaiL 272 (407)
...+.++...++|+++|++-. |..|.+. .++.++.+++. ++.|+-..=++-|+. .+..+..+|+|+|.+-...
T Consensus 17 ~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~-~~~~~~v~l~v~d~~~~i~~~~~~g~d~v~vh~~~- 94 (220)
T PRK05581 17 RLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKV-TKLPLDVHLMVENPDRYVPDFAKAGADIITFHVEA- 94 (220)
T ss_pred HHHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhc-CCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEeecc-
Confidence 456678899999999999943 2233333 57788888764 432321111122333 4666789999997775543
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEe--CCHHHHHHHhcccCCcEEEeeccccccccccccccccccC-chhHHHHhhccccc
Q 015424 273 PDLDIRYMTKICKLLGLTALVEV--HDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVD-NSNTKKLLEGERGE 349 (407)
Q Consensus 273 ~~~~L~~Li~~a~~LGL~aLVEV--ht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vD-l~~t~~L~~~~~~~ 349 (407)
.++....++.++.+|+...+-+ |+..|..+.+.. ++++|++-..+. +.+..++..+ ++...++.+....
T Consensus 95 -~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~~~-~~d~i~~~~~~~-----g~tg~~~~~~~~~~i~~~~~~~~~- 166 (220)
T PRK05581 95 -SEHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDVLD-LLDLVLLMSVNP-----GFGGQKFIPEVLEKIRELRKLIDE- 166 (220)
T ss_pred -chhHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHh-hCCEEEEEEECC-----CCCcccccHHHHHHHHHHHHHHHh-
Confidence 2456677888889999988877 455555454442 578887754332 2232323221 2222223222100
Q ss_pred ccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 350 IIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 350 ~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
. .-+..+...|||+ ++++..+.++|+|+|+||++|++++||.+.+++|..
T Consensus 167 -~-~~~~~i~v~GGI~-~~nv~~l~~~GaD~vvvgSai~~~~d~~~~~~~~~~ 216 (220)
T PRK05581 167 -R-GLDILIEVDGGIN-ADNIKECAEAGADVFVAGSAVFGAPDYKEAIDSLRA 216 (220)
T ss_pred -c-CCCceEEEECCCC-HHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHH
Confidence 0 0023455779995 499999999999999999999999999999988864
No 60
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=99.19 E-value=2.9e-10 Score=107.73 Aligned_cols=172 Identities=20% Similarity=0.246 Sum_probs=120.1
Q ss_pred HHHHHHHHcCCcEEEEEecCCcCCCCHHHHHH-HH------hcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCC
Q 015424 201 EIARSYEKGGAACLSILTDEKYFKGSFENLEA-VR------SAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (407)
Q Consensus 201 ~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~-Vr------~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~ 273 (407)
+..+...++|+++|..- ++. -+.+++.. ++ +. .+.|++..| .+++ |...|||+|+|....++
T Consensus 23 ~~l~~~l~~G~~~vqLR-~k~---~~~~~~~~la~~l~~~~~~-~~~~liInd----~~~l--A~~~~adGVHlg~~d~~ 91 (211)
T PRK03512 23 QWIERLLDAGVRTLQLR-IKD---RRDEEVEADVVAAIALGRR-YQARLFIND----YWRL--AIKHQAYGVHLGQEDLE 91 (211)
T ss_pred HHHHHHHhCCCCEEEEc-CCC---CCHHHHHHHHHHHHHHHHH-hCCeEEEeC----HHHH--HHHcCCCEEEcChHhCC
Confidence 45677778899888774 222 23323222 21 22 357877776 4555 77799999999877665
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccc---cCchhHHHHhhcccccc
Q 015424 274 DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFE---VDNSNTKKLLEGERGEI 350 (407)
Q Consensus 274 ~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~---vDl~~t~~L~~~~~~~~ 350 (407)
..+.+.+. ..+.-.=+-|||.+|+.+|.+. |+++|++ +|.|+++++... ..++...++.+.
T Consensus 92 ~~~~r~~~----~~~~~iG~S~H~~~e~~~A~~~-gaDYi~l------gpvf~T~tK~~~~~~~G~~~l~~~~~~----- 155 (211)
T PRK03512 92 TADLNAIR----AAGLRLGVSTHDDMEIDVALAA-RPSYIAL------GHVFPTQTKQMPSAPQGLAQLARHVER----- 155 (211)
T ss_pred HHHHHHhc----CCCCEEEEeCCCHHHHHHHhhc-CCCEEEE------CCccCCCCCCCCCCCCCHHHHHHHHHh-----
Confidence 44333221 1122333478999999999986 9999998 566777666421 233444444332
Q ss_pred cccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 351 IRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 351 i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
. .++++++.||| +++++..+..+|++||-|-++||+.+||.+++++|++
T Consensus 156 ~--~~~PV~AiGGI-~~~ni~~l~~~Ga~GiAvisai~~~~d~~~~~~~l~~ 204 (211)
T PRK03512 156 L--ADYPTVAIGGI-SLERAPAVLATGVGSIAVVSAITQAADWRAATAQLLE 204 (211)
T ss_pred c--CCCCEEEECCC-CHHHHHHHHHcCCCEEEEhhHhhCCCCHHHHHHHHHH
Confidence 1 25799999999 7999999999999999999999999999999999875
No 61
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=99.19 E-value=1.1e-10 Score=121.00 Aligned_cols=181 Identities=19% Similarity=0.151 Sum_probs=125.7
Q ss_pred HHHHHHHHHcCCcEEEEEecCCcCCCCH-HHHHHHHhc-----CCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCC
Q 015424 200 VEIARSYEKGGAACLSILTDEKYFKGSF-ENLEAVRSA-----GVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (407)
Q Consensus 200 ~~iA~ay~~~GA~aISVLTd~~~F~Gs~-edL~~Vr~a-----~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~ 273 (407)
.+..+...++|+..|-.- ++. -+. +.++.+++. ..+.|++..| .+|+ |.+.|||+|+|...-++
T Consensus 220 ~~~ve~aL~aGv~~VQLR-eK~---ls~~el~~la~~l~~l~~~~gv~LiIND----~~dl--Al~~gAdGVHLGQeDL~ 289 (437)
T PRK12290 220 VEWIERLLPLGINTVQLR-IKD---PQQADLEQQIIRAIALGREYNAQVFIND----YWQL--AIKHQAYGVHLGQEDLE 289 (437)
T ss_pred HHHHHHHHhCCCCEEEEe-CCC---CCHHHHHHHHHHHHHHHHHhCCEEEEEC----HHHH--HHHcCCCEEEcChHHcc
Confidence 456778888999887764 222 232 233333321 1256666655 5676 78899999999987776
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccc---cCchhHHHHhhcccccc
Q 015424 274 DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFE---VDNSNTKKLLEGERGEI 350 (407)
Q Consensus 274 ~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~---vDl~~t~~L~~~~~~~~ 350 (407)
..+++.+...-..+|+ -||+.+|+.+|... |+++||+ ||+|+++++... ..++...++.+.+..-.
T Consensus 290 ~~~aR~ilg~~~iIGv----StHs~eEl~~A~~~-gaDYI~l------GPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~ 358 (437)
T PRK12290 290 EANLAQLTDAGIRLGL----STHGYYELLRIVQI-QPSYIAL------GHIFPTTTKQMPSKPQGLVRLALYQKLIDTIP 358 (437)
T ss_pred hhhhhhhcCCCCEEEE----ecCCHHHHHHHhhc-CCCEEEE------CCccCCCCCCCCCCCCCHHHHHHHHHHhhhcc
Confidence 6555444332223455 58999999999997 9999998 677888877643 33444433333210000
Q ss_pred c-ccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 351 I-RQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 351 i-~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
. ...++++|+.||| +++++..+.++|+++|-|=++||+.+||.+++++|..
T Consensus 359 ~~~~~~iPVVAIGGI-~~~Ni~~vl~aGa~GVAVVSAI~~A~DP~aa~~~l~~ 410 (437)
T PRK12290 359 YQGQTGFPTVAIGGI-DQSNAEQVWQCGVSSLAVVRAITLAEDPQLVIEFFDQ 410 (437)
T ss_pred ccccCCCCEEEECCc-CHHHHHHHHHcCCCEEEEehHhhcCCCHHHHHHHHHH
Confidence 0 0025899999999 9999999999999999999999999999999998864
No 62
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=99.16 E-value=3.5e-10 Score=107.99 Aligned_cols=171 Identities=12% Similarity=0.060 Sum_probs=116.9
Q ss_pred CHHHHHHHHHHcC-CcEEEEEecCCcCCCCHHH-HHHHH------hcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEec
Q 015424 198 DPVEIARSYEKGG-AACLSILTDEKYFKGSFEN-LEAVR------SAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA 269 (407)
Q Consensus 198 dp~~iA~ay~~~G-A~aISVLTd~~~F~Gs~ed-L~~Vr------~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLia 269 (407)
+..+.++...++| ..+|-+- ++. -+... +..++ +. .++|++..|. +..|...|||+|+|..
T Consensus 27 ~~~~~l~~al~~G~v~~vQlR-~K~---l~~~~~~~~a~~l~~l~~~-~gv~liINd~------~dlA~~~~adGVHLg~ 95 (221)
T PRK06512 27 ELAKLLRAALQGGDVASVILP-QYG---LDEATFQKQAEKLVPVIQE-AGAAALIAGD------SRIAGRVKADGLHIEG 95 (221)
T ss_pred cHHHHHHHHHcCCCccEEEEe-CCC---CCHHHHHHHHHHHHHHHHH-hCCEEEEeCH------HHHHHHhCCCEEEECc
Confidence 5667788888889 5777663 222 12222 22222 22 3678887763 4448889999999987
Q ss_pred cCCCHHHHHHHHHHHHHcCCcEEEE---eCCHHHHHHHhcccCCcEEEeeccccccccccccccccc--cCchhHHHHhh
Q 015424 270 AVLPDLDIRYMTKICKLLGLTALVE---VHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFE--VDNSNTKKLLE 344 (407)
Q Consensus 270 aiL~~~~L~~Li~~a~~LGL~aLVE---Vht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~--vDl~~t~~L~~ 344 (407)
..++-.+. -+.+|-..++- +|+.+++..|.+. |+|+|++- |.+. ++++.. ..++....+.+
T Consensus 96 ~d~~~~~~------r~~~~~~~iiG~s~~~s~~~a~~A~~~-gaDYv~~G------pv~t-~tK~~~~p~gl~~l~~~~~ 161 (221)
T PRK06512 96 NLAALAEA------IEKHAPKMIVGFGNLRDRHGAMEIGEL-RPDYLFFG------KLGA-DNKPEAHPRNLSLAEWWAE 161 (221)
T ss_pred cccCHHHH------HHhcCCCCEEEecCCCCHHHHHHhhhc-CCCEEEEC------CCCC-CCCCCCCCCChHHHHHHHH
Confidence 65543222 22345555555 4689999888886 99999994 4432 222211 22333333333
Q ss_pred cccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 345 GERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 345 ~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
. .++++++.||| +++++..+.++|+++|-|-++||+.+||..++++|..
T Consensus 162 ~--------~~iPvvAIGGI-~~~n~~~~~~~GA~giAvisai~~~~dp~~a~~~~~~ 210 (221)
T PRK06512 162 M--------IEIPCIVQAGS-DLASAVEVAETGAEFVALERAVFDAHDPPLAVAQANA 210 (221)
T ss_pred h--------CCCCEEEEeCC-CHHHHHHHHHhCCCEEEEhHHhhCCCCHHHHHHHHHH
Confidence 2 35899999999 9999999999999999999999999999999988864
No 63
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.16 E-value=2.1e-09 Score=114.64 Aligned_cols=193 Identities=20% Similarity=0.165 Sum_probs=144.4
Q ss_pred CCCCCCCCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHH------HHHHHhcCCCCcEEeccccCCH-----------HH
Q 015424 191 GILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFEN------LEAVRSAGVKCPLLCKEFIVDA-----------WQ 253 (407)
Q Consensus 191 G~i~~~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~ed------L~~Vr~a~v~lPVL~KDFIid~-----------~Q 253 (407)
+.++.--||+++|+.|.+.||+.|++++-..++.|...+ ++.+.+. +.+|+-....|.+. .+
T Consensus 261 ~~~~~~gdPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~-~~ip~~vGGGIr~~~d~~~~~~~~~e~ 339 (538)
T PLN02617 261 REVRNLGKPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASEN-VFVPLTVGGGIRDFTDANGRYYSSLEV 339 (538)
T ss_pred cCCCcCCCHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhh-CCCCEEEcCCccccccccccccchHHH
Confidence 446777899999999999999999999988876654433 4455454 78999999999886 67
Q ss_pred HHHHHHcCCCEEEEeccCCCHH------------HHHHHHHHHHHcCCc-EEEEeC------------------------
Q 015424 254 IYYARTKGADAVLLIAAVLPDL------------DIRYMTKICKLLGLT-ALVEVH------------------------ 296 (407)
Q Consensus 254 I~eAr~~GADaVLLiaaiL~~~------------~L~~Li~~a~~LGL~-aLVEVh------------------------ 296 (407)
+.....+|||.|.+.++++.+. ++ +-+.++.+|=+ ++|-+.
T Consensus 340 ~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~--i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~~ 417 (538)
T PLN02617 340 ASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTS--IEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTNPGP 417 (538)
T ss_pred HHHHHHcCCCEEEEChHHHhChhhhhccccccCHHH--HHHHHHHcCCceEEEEEecCcCcccCccccccccccccccCc
Confidence 8889999999999999887642 33 55667777766 333222
Q ss_pred ---------------------CH-HHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccC
Q 015424 297 ---------------------DE-REMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQK 354 (407)
Q Consensus 297 ---------------------t~-eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~ 354 (407)
+. +-++++.++ |+.-|=+|+-|-=| +--..|++.+..+.+. .
T Consensus 418 ~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~-Gageil~t~id~DG-------t~~G~d~~l~~~v~~~--------~ 481 (538)
T PLN02617 418 NGEEYAWYQCTVKGGREGRPIGAYELAKAVEEL-GAGEILLNCIDCDG-------QGKGFDIELVKLVSDA--------V 481 (538)
T ss_pred CcccceEEEEEEecCcccCCCCHHHHHHHHHhc-CCCEEEEeeccccc-------cccCcCHHHHHHHHhh--------C
Confidence 11 224555565 88766666655422 2234688888777664 3
Q ss_pred CceEEEeeCCCCHHHHHHHHH-cCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 355 NIIVVGESGLFTPDDIAYVQE-AGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 355 ~v~vVAESGI~t~eD~~~l~~-~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
++++|+.||+.+++|+..+.. .|++|++.|+-+.....+...+++.+.
T Consensus 482 ~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k~~l~ 530 (538)
T PLN02617 482 TIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVKEHLL 530 (538)
T ss_pred CCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHHHHHH
Confidence 689999999999999999987 679999999999988887777776654
No 64
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=99.16 E-value=3.4e-09 Score=97.66 Aligned_cols=190 Identities=21% Similarity=0.240 Sum_probs=119.7
Q ss_pred CHHHHHHHHHHcCCcEEEEE-ecCCcCCC---CHHHHHHHHhcCCCCcEEeccccCCHH-HHHHHHHcCCCEEEEeccCC
Q 015424 198 DPVEIARSYEKGGAACLSIL-TDEKYFKG---SFENLEAVRSAGVKCPLLCKEFIVDAW-QIYYARTKGADAVLLIAAVL 272 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVL-Td~~~F~G---s~edL~~Vr~a~v~lPVL~KDFIid~~-QI~eAr~~GADaVLLiaaiL 272 (407)
+..+.++...++|+++|.+- -|..|... +++.++.+|+. ++.|+.+.=++.|+. .+..+..+|+|+|.+-...-
T Consensus 13 ~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~-~~~~~~v~l~~~d~~~~~~~~~~~g~dgv~vh~~~~ 91 (211)
T cd00429 13 NLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKH-TDLPLDVHLMVENPERYIEAFAKAGADIITFHAEAT 91 (211)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhh-CCCcEEEEeeeCCHHHHHHHHHHcCCCEEEECccch
Confidence 45566888899999999982 22222222 35778888864 444543222223322 36678899999987754332
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeCC--HHHHHHHhcccCCcEEEeeccccccccccccccccccC-chhHHHHhhccccc
Q 015424 273 PDLDIRYMTKICKLLGLTALVEVHD--EREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVD-NSNTKKLLEGERGE 349 (407)
Q Consensus 273 ~~~~L~~Li~~a~~LGL~aLVEVht--~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vD-l~~t~~L~~~~~~~ 349 (407)
++..+.++.++.+|+...+.++. ..+..+.... ++++|++-.... +.++.++... ++...++.+... .
T Consensus 92 --~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~d~i~~~~~~~-----g~tg~~~~~~~~~~i~~~~~~~~-~ 162 (211)
T cd00429 92 --DHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLD-EVDLVLVMSVNP-----GFGGQKFIPEVLEKIRKLRELIP-E 162 (211)
T ss_pred --hhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHh-hCCEEEEEEECC-----CCCCcccCHHHHHHHHHHHHHHH-h
Confidence 35567788889999999888873 3333233332 578887643322 2222233221 122222222210 0
Q ss_pred ccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhh
Q 015424 350 IIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 400 (407)
Q Consensus 350 ~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L 400 (407)
. ..++++++.|||+ ++++..+.+.|+|+|+||++|++.+||.+.++++
T Consensus 163 ~--~~~~pi~v~GGI~-~env~~~~~~gad~iivgsai~~~~~~~~~~~~~ 210 (211)
T cd00429 163 N--NLNLLIEVDGGIN-LETIPLLAEAGADVLVAGSALFGSDDYAEAIKEL 210 (211)
T ss_pred c--CCCeEEEEECCCC-HHHHHHHHHcCCCEEEECHHHhCCCCHHHHHHHh
Confidence 0 1136788999996 6999999999999999999999999999998876
No 65
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.11 E-value=3.6e-09 Score=100.70 Aligned_cols=174 Identities=20% Similarity=0.214 Sum_probs=133.4
Q ss_pred CCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCc--EEeccccCCHHHHHHHHHcCCCEEEEeccCCCH
Q 015424 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCP--LLCKEFIVDAWQIYYARTKGADAVLLIAAVLPD 274 (407)
Q Consensus 197 ~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lP--VL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~ 274 (407)
.+...+++++.++|..++=|--. -.+.++-++.+++..-+-| ++-=.-|+++.|+..|..+||+-++ +-.++
T Consensus 25 ~~a~~~~~al~~~Gi~~iEit~~---~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fiv--sP~~~- 98 (213)
T PRK06552 25 EEALKISLAVIKGGIKAIEVTYT---NPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIV--SPSFN- 98 (213)
T ss_pred HHHHHHHHHHHHCCCCEEEEECC---CccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEE--CCCCC-
Confidence 36788999999999988887422 2356778888876411113 4455678999999999999999976 33444
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccC
Q 015424 275 LDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQK 354 (407)
Q Consensus 275 ~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~ 354 (407)
.++++.|++.|+..+--|+|..|+..|.+. |+++|++-..+ .+ .++....|... + +
T Consensus 99 ---~~v~~~~~~~~i~~iPG~~T~~E~~~A~~~-Gad~vklFPa~-----------~~--G~~~ik~l~~~-----~--p 154 (213)
T PRK06552 99 ---RETAKICNLYQIPYLPGCMTVTEIVTALEA-GSEIVKLFPGS-----------TL--GPSFIKAIKGP-----L--P 154 (213)
T ss_pred ---HHHHHHHHHcCCCEECCcCCHHHHHHHHHc-CCCEEEECCcc-----------cC--CHHHHHHHhhh-----C--C
Confidence 347899999999999999999999999997 99999983222 22 23334445432 2 3
Q ss_pred CceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCC------CChHHHHHhhh
Q 015424 355 NIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ------DDPGKGITGLF 401 (407)
Q Consensus 355 ~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~------~dp~~~i~~L~ 401 (407)
++.+++-||| +.+++....++|++++-+|++|+.. .++.+..+++.
T Consensus 155 ~ip~~atGGI-~~~N~~~~l~aGa~~vavgs~l~~~~~~~~~~~i~~~a~~~~ 206 (213)
T PRK06552 155 QVNVMVTGGV-NLDNVKDWFAAGADAVGIGGELNKLASQGDFDLITEKAKKYM 206 (213)
T ss_pred CCEEEEECCC-CHHHHHHHHHCCCcEEEEchHHhCccccCCHHHHHHHHHHHH
Confidence 5899999999 7999999999999999999999987 46777666664
No 66
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=99.10 E-value=7.3e-09 Score=100.96 Aligned_cols=174 Identities=20% Similarity=0.246 Sum_probs=108.9
Q ss_pred HHHHHHHHHHcCCcEEEEEe---cCCc------------------CCCCHHHHHHHHhcCCCCcEEeccccCC------H
Q 015424 199 PVEIARSYEKGGAACLSILT---DEKY------------------FKGSFENLEAVRSAGVKCPLLCKEFIVD------A 251 (407)
Q Consensus 199 p~~iA~ay~~~GA~aISVLT---d~~~------------------F~Gs~edL~~Vr~a~v~lPVL~KDFIid------~ 251 (407)
-.++++++.++||+.|=+=. ||-+ ...-++.++.+|+..+++|++.--+-.+ +
T Consensus 26 ~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e 105 (256)
T TIGR00262 26 SLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVE 105 (256)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHH
Confidence 35566777777777665521 1100 1124677888885336889763332222 1
Q ss_pred HHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEE---EeCCHHHHHHHhcc-cCCcEEEeeccccccccccc
Q 015424 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALV---EVHDEREMDRVLGI-EGIELIGINNRNLAISIFSY 327 (407)
Q Consensus 252 ~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLV---EVht~eElerAl~l-~Ga~iIGINnRdL~~~~~~~ 327 (407)
.-+.++.++|+|+|++- .|+.++..++++.++++|++... -..+.+.+....+. .|.-++.. + .|+
T Consensus 106 ~f~~~~~~aGvdgviip--Dlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs--~------~G~ 175 (256)
T TIGR00262 106 EFYAKCKEVGVDGVLVA--DLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVS--R------AGV 175 (256)
T ss_pred HHHHHHHHcCCCEEEEC--CCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEE--C------CCC
Confidence 23677899999998875 45667889999999999999642 33346666655554 13333211 1 233
Q ss_pred cccc--cccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccC
Q 015424 328 RTET--FEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK 389 (407)
Q Consensus 328 t~~T--f~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk 389 (407)
|... |..++. ++++.++. . .+.+++..+||+|+++++++.++|||+|+||++|++
T Consensus 176 TG~~~~~~~~~~---~~i~~lr~--~--~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv~ 232 (256)
T TIGR00262 176 TGARNRAASALN---ELVKRLKA--Y--SAKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIVK 232 (256)
T ss_pred CCCcccCChhHH---HHHHHHHh--h--cCCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 3332 433322 22222221 1 234688899999999999999999999999999997
No 67
>PRK07695 transcriptional regulator TenI; Provisional
Probab=99.09 E-value=6.8e-09 Score=96.66 Aligned_cols=173 Identities=17% Similarity=0.157 Sum_probs=116.4
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHH----HHhcCC-CCcEEeccccCCHHHHHHHHHcCCCEEEEeccCC
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEA----VRSAGV-KCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~----Vr~a~v-~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (407)
+..++++ ..++|+.+|.+- ++. .+.+++.. +++.+. ..+++..| . ...|...|+|+|+|....+
T Consensus 16 ~~~~~~~-~~~~g~~~iqlR-~k~---~~~~~~~~~~~~l~~~~~~~~~liin~----~--~~la~~~~~~gvHl~~~~~ 84 (201)
T PRK07695 16 ELVAVAM-QIHSEVDYIHIR-ERE---KSAKELYEGVESLLKKGVPASKLIIND----R--VDIALLLNIHRVQLGYRSF 84 (201)
T ss_pred hHHHHHH-HHhCCCCEEEEc-CCC---CCHHHHHHHHHHHHHhCCCCCeEEEEC----H--HHHHHHcCCCEEEeCcccC
Confidence 3445565 567799888874 222 34444433 233212 12344444 3 4458889999999987655
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccc-c-ccCchhHHHHhhcccccc
Q 015424 273 PDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTET-F-EVDNSNTKKLLEGERGEI 350 (407)
Q Consensus 273 ~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~T-f-~vDl~~t~~L~~~~~~~~ 350 (407)
...+++. .. -++-+-++|||.+++.++.++ |+++|..-+ .++..++. . ..+++...++.+.
T Consensus 85 ~~~~~r~---~~--~~~~ig~s~~s~e~a~~a~~~-Gadyi~~g~------v~~t~~k~~~~~~g~~~l~~~~~~----- 147 (201)
T PRK07695 85 SVRSVRE---KF--PYLHVGYSVHSLEEAIQAEKN-GADYVVYGH------VFPTDCKKGVPARGLEELSDIARA----- 147 (201)
T ss_pred CHHHHHH---hC--CCCEEEEeCCCHHHHHHHHHc-CCCEEEECC------CCCCCCCCCCCCCCHHHHHHHHHh-----
Confidence 4433322 11 266778899999999999997 999997632 22222221 1 1244455555432
Q ss_pred cccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 351 IRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 351 i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
-++++++.||| +++++..+.+.|+++|.||++|+.++||.+.++++..
T Consensus 148 ---~~ipvia~GGI-~~~~~~~~~~~Ga~gvav~s~i~~~~~p~~~~~~~~~ 195 (201)
T PRK07695 148 ---LSIPVIAIGGI-TPENTRDVLAAGVSGIAVMSGIFSSANPYSKAKRYAE 195 (201)
T ss_pred ---CCCCEEEEcCC-CHHHHHHHHHcCCCEEEEEHHHhcCCCHHHHHHHHHH
Confidence 25789999999 9999999999999999999999999999999988763
No 68
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=99.08 E-value=6.3e-09 Score=107.69 Aligned_cols=184 Identities=20% Similarity=0.272 Sum_probs=127.6
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEecc---ccCCHHHHHHHHHcCCCEEEEeccCCCH
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKE---FIVDAWQIYYARTKGADAVLLIAAVLPD 274 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KD---FIid~~QI~eAr~~GADaVLLiaaiL~~ 274 (407)
+..++++...++|+..|.+-+ +..+....+.++.+++. ...|.+.-| ..+....+..|..+|||+|++... -++
T Consensus 17 ~~~~~~~~~~~~Gv~~ie~g~-p~~~~~~~~~i~~l~~~-~~~~~ii~D~kl~d~g~~~v~~a~~aGAdgV~v~g~-~~~ 93 (430)
T PRK07028 17 RAVEIAKEAVAGGADWIEAGT-PLIKSEGMNAIRTLRKN-FPDHTIVADMKTMDTGAIEVEMAAKAGADIVCILGL-ADD 93 (430)
T ss_pred HHHHHHHHHHhcCCcEEEeCC-HHHHHhhHHHHHHHHHH-CCCCEEEEEeeeccchHHHHHHHHHcCCCEEEEecC-CCh
Confidence 455677777779999998732 22222336667777664 344555544 223566889999999999997532 122
Q ss_pred HHHHHHHHHHHHcCCcEEEE---eCC-HHHHHHHhcccCCcEEEeeccccccccccccccccccC-chhHHHHhhccccc
Q 015424 275 LDIRYMTKICKLLGLTALVE---VHD-EREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVD-NSNTKKLLEGERGE 349 (407)
Q Consensus 275 ~~L~~Li~~a~~LGL~aLVE---Vht-~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vD-l~~t~~L~~~~~~~ 349 (407)
..+.++++.++++|+.+++. +++ .+.+..+.++ |+++|++. +++++.++... ++...++.+.
T Consensus 94 ~~~~~~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~~-GaD~I~~~--------pg~~~~~~~~~~~~~l~~l~~~---- 160 (430)
T PRK07028 94 STIEDAVRAARKYGVRLMADLINVPDPVKRAVELEEL-GVDYINVH--------VGIDQQMLGKDPLELLKEVSEE---- 160 (430)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCCCHHHHHHHHHhc-CCCEEEEE--------eccchhhcCCChHHHHHHHHhh----
Confidence 34678889999999999875 334 4556777886 99999874 23333333322 2333333321
Q ss_pred ccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 350 IIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 350 ~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
.++++++.||| +++++..+.++|+++|.||++|++.+||.+.++.|..
T Consensus 161 ----~~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~ 208 (430)
T PRK07028 161 ----VSIPIAVAGGL-DAETAAKAVAAGADIVIVGGNIIKSADVTEAARKIRE 208 (430)
T ss_pred ----CCCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHH
Confidence 24789999999 7899999999999999999999999999988877754
No 69
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=99.07 E-value=4.1e-09 Score=101.60 Aligned_cols=176 Identities=18% Similarity=0.272 Sum_probs=114.7
Q ss_pred HHHHHHHHHHcCCcEEEEE-------ecCCcCC--------------CCHHHHHHHHhcCCCCcEEeccccCC------H
Q 015424 199 PVEIARSYEKGGAACLSIL-------TDEKYFK--------------GSFENLEAVRSAGVKCPLLCKEFIVD------A 251 (407)
Q Consensus 199 p~~iA~ay~~~GA~aISVL-------Td~~~F~--------------Gs~edL~~Vr~a~v~lPVL~KDFIid------~ 251 (407)
-.+.++.++++||++|.+- .|.++-+ -.++.++.+|+. +++|+..--+.-+ +
T Consensus 16 ~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~-~~~pv~lm~y~n~~~~~G~~ 94 (242)
T cd04724 16 TLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKK-NTIPIVLMGYYNPILQYGLE 94 (242)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhc-CCCCEEEEEecCHHHHhCHH
Confidence 5577888999999999986 2223332 246677778875 6889653222111 3
Q ss_pred HHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHHHHhcccCCcEEEeecccccccccccc
Q 015424 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGIEGIELIGINNRNLAISIFSYR 328 (407)
Q Consensus 252 ~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVh---t~eElerAl~l~Ga~iIGINnRdL~~~~~~~t 328 (407)
.-+.++..+|||++++. -|+.+++.++++.++++|++..+=+. +.+.++.+++. ..++|=+-.++ +++|.+
T Consensus 95 ~fi~~~~~aG~~giiip--Dl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~-~~~~vy~~s~~---g~tG~~ 168 (242)
T cd04724 95 RFLRDAKEAGVDGLIIP--DLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAEL-ASGFIYYVSRT---GVTGAR 168 (242)
T ss_pred HHHHHHHHCCCcEEEEC--CCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhh-CCCCEEEEeCC---CCCCCc
Confidence 34777899999998884 34567889999999999998854333 46667777763 23333221111 122221
Q ss_pred ccccccCc-hhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015424 329 TETFEVDN-SNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 391 (407)
Q Consensus 329 ~~Tf~vDl-~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 391 (407)
..|..+. +...++.+. .+++++..+||+++++++++.++ ||+++||++|++.-
T Consensus 169 -~~~~~~~~~~i~~lr~~--------~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv~~~ 222 (242)
T cd04724 169 -TELPDDLKELIKRIRKY--------TDLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALVKII 222 (242)
T ss_pred -cCCChhHHHHHHHHHhc--------CCCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHHHHH
Confidence 1133332 222223221 36789999999999999999999 99999999998654
No 70
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=98.99 E-value=3.4e-09 Score=111.74 Aligned_cols=173 Identities=23% Similarity=0.306 Sum_probs=121.0
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCCCH-HHHHHHHhc-----CCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccC
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKGSF-ENLEAVRSA-----GVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV 271 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~-edL~~Vr~a-----~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaai 271 (407)
+..+..+...++|+.+|.+- ++. -+. +.+..+++. ..+++++..| .+++ |...|||+|+|....
T Consensus 308 ~~~~~l~~~l~~Gv~~vqlR-~k~---~~~~~~~~~a~~l~~~~~~~~~~liind----~~~l--A~~~~adGvHl~~~d 377 (502)
T PLN02898 308 STVDAVRAAIEGGATIVQLR-EKE---AETREFIEEAKACLAICRSYGVPLLIND----RVDV--ALACDADGVHLGQSD 377 (502)
T ss_pred hHHHHHHHHHHcCCCEEEEc-cCC---CCHHHHHHHHHHHHHHHHHhCCEEEEcC----hHHH--HHhcCCCEEEeChHh
Confidence 35667777888899888763 222 122 222333321 1356666655 4555 778999999998766
Q ss_pred CCHHHHHHHHHHHHHcCCc--EEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccc--cCchhHHHHhhccc
Q 015424 272 LPDLDIRYMTKICKLLGLT--ALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFE--VDNSNTKKLLEGER 347 (407)
Q Consensus 272 L~~~~L~~Li~~a~~LGL~--aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~--vDl~~t~~L~~~~~ 347 (407)
++..+.+.+ +|-+ .=+-||+.+|+.+|.+. |+++|++ +|.|+++++... .+++....+.+.
T Consensus 378 ~~~~~~r~~------~~~~~~iG~S~h~~~e~~~a~~~-gadyi~~------gpif~t~tk~~~~~~g~~~~~~~~~~-- 442 (502)
T PLN02898 378 MPVRLARSL------LGPGKIIGVSCKTPEQAEQAWKD-GADYIGC------GGVFPTNTKANNKTIGLDGLREVCEA-- 442 (502)
T ss_pred cCHHHHHHh------cCCCCEEEEeCCCHHHHHHHhhc-CCCEEEE------CCeecCCCCCCCCCCCHHHHHHHHHc--
Confidence 654433222 3333 33679999999999997 9999998 355555554322 355566665443
Q ss_pred ccccccCCceEEEeeCCCCHHHHHHHHHcCCC---EEEEcccccCCCChHHHHHhhhc
Q 015424 348 GEIIRQKNIIVVGESGLFTPDDIAYVQEAGVK---AVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 348 ~~~i~~~~v~vVAESGI~t~eD~~~l~~~Gad---aVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
.++++++.||| +++++..++++|++ +|.|+++|+..+||.+.+++|..
T Consensus 443 ------~~~Pv~aiGGI-~~~~~~~~~~~G~~~~~gvav~~~i~~~~d~~~~~~~~~~ 493 (502)
T PLN02898 443 ------SKLPVVAIGGI-SASNAASVMESGAPNLKGVAVVSALFDQEDVLKATRKLHA 493 (502)
T ss_pred ------CCCCEEEECCC-CHHHHHHHHHcCCCcCceEEEEeHHhcCCCHHHHHHHHHH
Confidence 35799999999 69999999999999 99999999999999999988764
No 71
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.98 E-value=1.9e-08 Score=94.86 Aligned_cols=171 Identities=16% Similarity=0.227 Sum_probs=111.0
Q ss_pred HHHHHHHHHcCCcEEEEEecCCcCC--CCHHHHHHHHhcCCCCcEEeccccCC-----HHHHHHHHHcCCCEEEEeccCC
Q 015424 200 VEIARSYEKGGAACLSILTDEKYFK--GSFENLEAVRSAGVKCPLLCKEFIVD-----AWQIYYARTKGADAVLLIAAVL 272 (407)
Q Consensus 200 ~~iA~ay~~~GA~aISVLTd~~~F~--Gs~edL~~Vr~a~v~lPVL~KDFIid-----~~QI~eAr~~GADaVLLiaaiL 272 (407)
.+++++..+.|+ +.++ .+.+.. .-.+.++.+++. .+.|+...=|+-+ ...+..+..+|+|+|.|...
T Consensus 16 ~~~~~~~~~~G~--ig~i-~~~~~~~~~~~~~~~~i~~~-~~~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~-- 89 (236)
T cd04730 16 PELAAAVSNAGG--LGFI-GAGYLTPEALRAEIRKIRAL-TDKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFG-- 89 (236)
T ss_pred HHHHHHHHhCCC--cccc-CCCCCCHHHHHHHHHHHHHh-cCCCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEcCC--
Confidence 356777777773 4444 112110 012344555543 3345443322222 22466688999999998654
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccc-cCchhHHHHhhccccccc
Q 015424 273 PDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFE-VDNSNTKKLLEGERGEII 351 (407)
Q Consensus 273 ~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~-vDl~~t~~L~~~~~~~~i 351 (407)
.. ..+++.++..++..++-+++.+++..+.+. |+++|.+.++.- + ++. ..+. .+++...++.+.
T Consensus 90 ~~---~~~~~~~~~~~i~~i~~v~~~~~~~~~~~~-gad~i~~~~~~~---~-G~~-~~~~~~~~~~i~~i~~~------ 154 (236)
T cd04730 90 PP---AEVVERLKAAGIKVIPTVTSVEEARKAEAA-GADALVAQGAEA---G-GHR-GTFDIGTFALVPEVRDA------ 154 (236)
T ss_pred CC---HHHHHHHHHcCCEEEEeCCCHHHHHHHHHc-CCCEEEEeCcCC---C-CCC-CccccCHHHHHHHHHHH------
Confidence 22 346677778899999999999999999886 999998865522 1 111 1111 123333333322
Q ss_pred ccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCCh
Q 015424 352 RQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDP 393 (407)
Q Consensus 352 ~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp 393 (407)
.++++++.|||++++|+.++..+|+|+|.||++|++..+-
T Consensus 155 --~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~e~ 194 (236)
T cd04730 155 --VDIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEES 194 (236)
T ss_pred --hCCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcCccc
Confidence 2578999999999999999999999999999999988764
No 72
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=98.95 E-value=6.8e-08 Score=94.77 Aligned_cols=147 Identities=16% Similarity=0.299 Sum_probs=98.3
Q ss_pred CHHHHHHHHhcCCCCcEEeccccCCHHH------HHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEe--CC
Q 015424 226 SFENLEAVRSAGVKCPLLCKEFIVDAWQ------IYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEV--HD 297 (407)
Q Consensus 226 s~edL~~Vr~a~v~lPVL~KDFIid~~Q------I~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEV--ht 297 (407)
-++.++.+|+. .++|++.--+..+-+| +.++.++|+|+|++- .|+.++..++.+.|++.|++.+.=| +|
T Consensus 79 ~~~~~~~~r~~-~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviip--DLP~ee~~~~~~~~~~~gi~~I~lv~PtT 155 (263)
T CHL00200 79 ILSILSEVNGE-IKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIP--DLPYEESDYLISVCNLYNIELILLIAPTS 155 (263)
T ss_pred HHHHHHHHhcC-CCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEec--CCCHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 37788888865 7889665444333333 778999999998773 4667788999999999999984444 34
Q ss_pred -HHHHHHHhcccCCcEEEe-eccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHH
Q 015424 298 -EREMDRVLGIEGIELIGI-NNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQE 375 (407)
Q Consensus 298 -~eElerAl~l~Ga~iIGI-NnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~ 375 (407)
.+.++...+... -+|-+ .+ .|+|...-... +...++++.++. ..+.+++.-.||+++|+++++.+
T Consensus 156 ~~eri~~i~~~a~-gFIY~vS~-------~GvTG~~~~~~-~~~~~~i~~ir~----~t~~Pi~vGFGI~~~e~~~~~~~ 222 (263)
T CHL00200 156 SKSRIQKIARAAP-GCIYLVST-------TGVTGLKTELD-KKLKKLIETIKK----MTNKPIILGFGISTSEQIKQIKG 222 (263)
T ss_pred CHHHHHHHHHhCC-CcEEEEcC-------CCCCCCCcccc-HHHHHHHHHHHH----hcCCCEEEECCcCCHHHHHHHHh
Confidence 566666665421 13332 22 23333321221 222333333222 13567888999999999999999
Q ss_pred cCCCEEEEccccc
Q 015424 376 AGVKAVLVGESIV 388 (407)
Q Consensus 376 ~GadaVLVGeaLm 388 (407)
+|||||+||++|+
T Consensus 223 ~GADGvVVGSalv 235 (263)
T CHL00200 223 WNINGIVIGSACV 235 (263)
T ss_pred cCCCEEEECHHHH
Confidence 9999999999995
No 73
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=98.92 E-value=6.7e-08 Score=93.72 Aligned_cols=175 Identities=22% Similarity=0.224 Sum_probs=120.8
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHh-cCCCCcEEec---cccC-----C---HHHHHHHHHcCC
Q 015424 195 EDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRS-AGVKCPLLCK---EFIV-----D---AWQIYYARTKGA 262 (407)
Q Consensus 195 ~~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~-a~v~lPVL~K---DFIi-----d---~~QI~eAr~~GA 262 (407)
...++.++.+...++|++++-+. +-.+...+. ...+++|+.+ +|-. . ..++.+|...||
T Consensus 34 ~~~~~~~~~~~a~~~~~~~v~~~---------p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga 104 (258)
T TIGR01949 34 GLVDIRKTVNEVAEGGADAVLLH---------KGIVRRGHRGYGKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGA 104 (258)
T ss_pred CcCCHHHHHHHHHhcCCCEEEeC---------cchhhhcccccCCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCC
Confidence 45699999999999998888773 223333221 1235666543 3321 1 135888999999
Q ss_pred CEEEEeccCCCH------HHHHHHHHHHHHcCCcEEEEeC---------CHHHH----HHHhcccCCcEEEeeccccccc
Q 015424 263 DAVLLIAAVLPD------LDIRYMTKICKLLGLTALVEVH---------DEREM----DRVLGIEGIELIGINNRNLAIS 323 (407)
Q Consensus 263 DaVLLiaaiL~~------~~L~~Li~~a~~LGL~aLVEVh---------t~eEl----erAl~l~Ga~iIGINnRdL~~~ 323 (407)
|+|-+-....+. .++..+.+.|+++|+..++.+. +.+++ +.+.++ |||+|++. +
T Consensus 105 ~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~-GADyikt~---~--- 177 (258)
T TIGR01949 105 DAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAEL-GADIVKTP---Y--- 177 (258)
T ss_pred CEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHH-CCCEEecc---C---
Confidence 999997765432 2355566667778988877432 22332 445565 99999973 2
Q ss_pred cccccccccccCchhHHHHhhcccccccccCCceEEEeeCCC--C----HHHHHHHHHcCCCEEEEcccccCCCChHHHH
Q 015424 324 IFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLF--T----PDDIAYVQEAGVKAVLVGESIVKQDDPGKGI 397 (407)
Q Consensus 324 ~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~--t----~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i 397 (407)
..+++...++.+. ..+++++.|||+ | .+.+..+.++|++++.+|.+|++.+||.+.+
T Consensus 178 ---------~~~~~~l~~~~~~--------~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~dp~~~~ 240 (258)
T TIGR01949 178 ---------TGDIDSFRDVVKG--------CPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDDPVGIT 240 (258)
T ss_pred ---------CCCHHHHHHHHHh--------CCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCCHHHHH
Confidence 1366666666653 246789999998 5 6677777899999999999999999999998
Q ss_pred Hhhhc
Q 015424 398 TGLFG 402 (407)
Q Consensus 398 ~~L~~ 402 (407)
+.|..
T Consensus 241 ~~l~~ 245 (258)
T TIGR01949 241 KAVCK 245 (258)
T ss_pred HHHHH
Confidence 88764
No 74
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=98.92 E-value=1.9e-07 Score=89.29 Aligned_cols=192 Identities=16% Similarity=0.154 Sum_probs=131.9
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCC----CHHHHHHHHhcCCCCcEEeccccCCHHH-HHHHHHcCCCEEEEeccCC
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKG----SFENLEAVRSAGVKCPLLCKEFIVDAWQ-IYYARTKGADAVLLIAAVL 272 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~G----s~edL~~Vr~a~v~lPVL~KDFIid~~Q-I~eAr~~GADaVLLiaaiL 272 (407)
+..+..+.++++|++.||+=--++.|-- +++.++.+|+..+++|+=+-=-+.+|.. |.....+|||.|.+-+...
T Consensus 13 ~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~tfg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~~H~Ea~ 92 (220)
T PRK08883 13 RLGEDVEKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITFHVEAS 92 (220)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCcccCccccCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCc
Confidence 4445566778899999999876666643 5678999997424788543333445654 5566789999999987765
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeC---CHHHHHHHhcccCCcEEEeeccccccccccccccccc-cCchhHHHHhhcccc
Q 015424 273 PDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFE-VDNSNTKKLLEGERG 348 (407)
Q Consensus 273 ~~~~L~~Li~~a~~LGL~aLVEVh---t~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~-vDl~~t~~L~~~~~~ 348 (407)
. ++.++++.++++|+.+=+=+. ..+.++..+.. .+.|-+=.-|- |+....|- ..++...++.+....
T Consensus 93 ~--~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~--~D~vlvMtV~P-----GfgGq~fi~~~lekI~~l~~~~~~ 163 (220)
T PRK08883 93 E--HVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDK--VDLILLMSVNP-----GFGGQSFIPHTLDKLRAVRKMIDE 163 (220)
T ss_pred c--cHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHh--CCeEEEEEecC-----CCCCceecHhHHHHHHHHHHHHHh
Confidence 3 578899999999999865554 45566666653 45444322222 22223343 334444555443211
Q ss_pred cccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 349 EIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 349 ~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
. ..++.+.+-|||+ ++.+..+.++|||++++|++|++.+|+.+.+++|..
T Consensus 164 ~---~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf~~~d~~~~i~~l~~ 213 (220)
T PRK08883 164 S---GRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIFGQPDYKAVIDEMRA 213 (220)
T ss_pred c---CCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHH
Confidence 0 1146788999995 999999999999999999999999999999988864
No 75
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.92 E-value=2.9e-08 Score=97.06 Aligned_cols=152 Identities=18% Similarity=0.255 Sum_probs=102.7
Q ss_pred CHHHHHHHHhcCCCCcEEeccccCCHHH------HHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEe--C-
Q 015424 226 SFENLEAVRSAGVKCPLLCKEFIVDAWQ------IYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEV--H- 296 (407)
Q Consensus 226 s~edL~~Vr~a~v~lPVL~KDFIid~~Q------I~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEV--h- 296 (407)
-++.++.+|+...++|++.--+..+-|| +.+++.+|+|++++- -|+.++.+++.+.|+++||+.+.=| +
T Consensus 76 ~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviip--DLp~ee~~~~~~~~~~~gl~~I~lvap~t 153 (258)
T PRK13111 76 VFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIP--DLPPEEAEELRAAAKKHGLDLIFLVAPTT 153 (258)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEEC--CCCHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 4677888883236889775554444343 677999999999983 6777899999999999999986522 2
Q ss_pred CHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHc
Q 015424 297 DEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEA 376 (407)
Q Consensus 297 t~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~ 376 (407)
+.+.++...++ ...+|-+-.+. + .+|.+ +.+..++....+.++. . .+++++..+||++++|+..+.+.
T Consensus 154 ~~eri~~i~~~-s~gfIY~vs~~--G-vTG~~-~~~~~~~~~~i~~vk~-----~--~~~pv~vGfGI~~~e~v~~~~~~ 221 (258)
T PRK13111 154 TDERLKKIASH-ASGFVYYVSRA--G-VTGAR-SADAADLAELVARLKA-----H--TDLPVAVGFGISTPEQAAAIAAV 221 (258)
T ss_pred CHHHHHHHHHh-CCCcEEEEeCC--C-CCCcc-cCCCccHHHHHHHHHh-----c--CCCcEEEEcccCCHHHHHHHHHh
Confidence 35667777765 44455432221 1 02221 2233344322222222 1 36788999999999999999986
Q ss_pred CCCEEEEcccccCCCC
Q 015424 377 GVKAVLVGESIVKQDD 392 (407)
Q Consensus 377 GadaVLVGeaLmk~~d 392 (407)
||||+||++|++.-+
T Consensus 222 -ADGviVGSaiv~~~~ 236 (258)
T PRK13111 222 -ADGVIVGSALVKIIE 236 (258)
T ss_pred -CCEEEEcHHHHHHHH
Confidence 999999999987654
No 76
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=98.92 E-value=1e-07 Score=93.12 Aligned_cols=175 Identities=21% Similarity=0.237 Sum_probs=121.8
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhc-CCCCcEEec-----ccc------CCHHHHHHHHHcCC
Q 015424 195 EDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSA-GVKCPLLCK-----EFI------VDAWQIYYARTKGA 262 (407)
Q Consensus 195 ~~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a-~v~lPVL~K-----DFI------id~~QI~eAr~~GA 262 (407)
...|+.++++...++|++++-+. +-.+...+.. ..+.|++.+ .|. .--.++.+|...||
T Consensus 37 ~~~d~~~~~~~a~~~~~~av~v~---------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~~~Ga 107 (267)
T PRK07226 37 GLVDIRDTVNKVAEGGADAVLMH---------KGLARHGHRGYGRDVGLIVHLSASTSLSPDPNDKVLVGTVEEAIKLGA 107 (267)
T ss_pred CcCCHHHHHHHHHhcCCCEEEeC---------HhHHhhhccccCCCCcEEEEEcCCCCCCCCCCcceeeecHHHHHHcCC
Confidence 45689999999999999888873 4455544331 134565542 221 11236888999999
Q ss_pred CEEEEeccCCC--H----HHHHHHHHHHHHcCCcEEEEe----------CCHHH----HHHHhcccCCcEEEeecccccc
Q 015424 263 DAVLLIAAVLP--D----LDIRYMTKICKLLGLTALVEV----------HDERE----MDRVLGIEGIELIGINNRNLAI 322 (407)
Q Consensus 263 DaVLLiaaiL~--~----~~L~~Li~~a~~LGL~aLVEV----------ht~eE----lerAl~l~Ga~iIGINnRdL~~ 322 (407)
|+|-+...+.+ . +++.++.+.|+++|+..++.+ ++.++ .+.+.++ ||++|=++ +
T Consensus 108 d~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~-GAD~vKt~---~-- 181 (267)
T PRK07226 108 DAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAEL-GADIVKTN---Y-- 181 (267)
T ss_pred CEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHH-CCCEEeeC---C--
Confidence 99988766543 2 255667777888999988752 23344 3555666 99998553 2
Q ss_pred ccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCC--CHHHHHHH----HHcCCCEEEEcccccCCCChHHH
Q 015424 323 SIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLF--TPDDIAYV----QEAGVKAVLVGESIVKQDDPGKG 396 (407)
Q Consensus 323 ~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~--t~eD~~~l----~~~GadaVLVGeaLmk~~dp~~~ 396 (407)
..|++...++.+. ..+++++.|||+ |.+++..+ .++|++|+.+|.+|++.+||.+.
T Consensus 182 ----------~~~~~~l~~~~~~--------~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~p~~~ 243 (267)
T PRK07226 182 ----------TGDPESFREVVEG--------CPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHEDPEAI 243 (267)
T ss_pred ----------CCCHHHHHHHHHh--------CCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCCHHHH
Confidence 2355555565542 247899999999 87777666 49999999999999999999988
Q ss_pred HHhhhc
Q 015424 397 ITGLFG 402 (407)
Q Consensus 397 i~~L~~ 402 (407)
++.|..
T Consensus 244 ~~~l~~ 249 (267)
T PRK07226 244 TRAISA 249 (267)
T ss_pred HHHHHH
Confidence 888753
No 77
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=98.89 E-value=2.5e-07 Score=95.46 Aligned_cols=185 Identities=16% Similarity=0.198 Sum_probs=128.2
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEecccc--CCHHHHHHHHHcCCCEEEEeccCCCHH
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFI--VDAWQIYYARTKGADAVLLIAAVLPDL 275 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFI--id~~QI~eAr~~GADaVLLiaaiL~~~ 275 (407)
...++++.....+...+-|=| +-|...+++-++.+|+.+.+.||.+-==+ ++.+-+..+..+|||.+.+-+.. +..
T Consensus 186 ~A~~i~~~l~~~~~~~iKvG~-~L~~~~G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~vTVH~ea-~~~ 263 (391)
T PRK13307 186 EVERVLSQLPKSDHIIIEAGT-PLIKKFGLEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADAVVISGLA-PIS 263 (391)
T ss_pred HHHHHHHhcccccceEEEECH-HHHHHhCHHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCEEEEeccC-CHH
Confidence 345555555544344455533 45666678999999986457777742112 33344667889999999997754 455
Q ss_pred HHHHHHHHHHHcCCcEEEE---eCCHHHHHHHhcccCCcEEEeec-cccccccccccccccccCchhHHHHhhccccccc
Q 015424 276 DIRYMTKICKLLGLTALVE---VHDEREMDRVLGIEGIELIGINN-RNLAISIFSYRTETFEVDNSNTKKLLEGERGEII 351 (407)
Q Consensus 276 ~L~~Li~~a~~LGL~aLVE---Vht~eElerAl~l~Ga~iIGINn-RdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i 351 (407)
.+...++.++++|+.+.+| ++|..|..+.+.. ++++|.+-. .|- .+...-++...++.+.
T Consensus 264 ti~~ai~~akk~GikvgVD~lnp~tp~e~i~~l~~-~vD~Vllht~vdp---------~~~~~~~~kI~~ikk~------ 327 (391)
T PRK13307 264 TIEKAIHEAQKTGIYSILDMLNVEDPVKLLESLKV-KPDVVELHRGIDE---------EGTEHAWGNIKEIKKA------ 327 (391)
T ss_pred HHHHHHHHHHHcCCEEEEEEcCCCCHHHHHHHhhC-CCCEEEEccccCC---------CcccchHHHHHHHHHh------
Confidence 7899999999999999998 6667666665664 889998742 332 1111112222233221
Q ss_pred ccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 352 RQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 352 ~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
..++.+...|||+ ++++..+.++|+|.++||++|++++||.+.+++|..
T Consensus 328 -~~~~~I~VdGGI~-~eti~~l~~aGADivVVGsaIf~a~Dp~~aak~l~~ 376 (391)
T PRK13307 328 -GGKILVAVAGGVR-VENVEEALKAGADILVVGRAITKSKDVRRAAEDFLN 376 (391)
T ss_pred -CCCCcEEEECCcC-HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHH
Confidence 1356889999995 999999999999999999999999999988888754
No 78
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=98.86 E-value=8.8e-09 Score=94.59 Aligned_cols=160 Identities=21% Similarity=0.250 Sum_probs=101.8
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHH------hcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccC
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVR------SAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV 271 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr------~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaai 271 (407)
+..+......++|+..|.+-. +. ....+..+.++ +. .++|++-.| .+++ |.+.|||+|+|...-
T Consensus 13 ~~~~~l~~~~~~gv~~v~lR~-k~--~~~~~~~~~a~~l~~~~~~-~~~~liin~----~~~l--a~~~~~dGvHl~~~~ 82 (180)
T PF02581_consen 13 DFLEQLEAALAAGVDLVQLRE-KD--LSDEELLELARRLAELCQK-YGVPLIIND----RVDL--ALELGADGVHLGQSD 82 (180)
T ss_dssp HHHHHHHHHHHTT-SEEEEE--SS--S-HHHHHHHHHHHHHHHHH-TTGCEEEES-----HHH--HHHCT-SEEEEBTTS
T ss_pred hHHHHHHHHHHCCCcEEEEcC-CC--CCccHHHHHHHHHHHHhhc-ceEEEEecC----CHHH--HHhcCCCEEEecccc
Confidence 456677777888888877642 21 11122222222 22 366777766 4555 778999999999887
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccc--cCchhHHHHhhccccc
Q 015424 272 LPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFE--VDNSNTKKLLEGERGE 349 (407)
Q Consensus 272 L~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~--vDl~~t~~L~~~~~~~ 349 (407)
++..+...+.. .+...=+-|||.+|+..+.+. |++++++ +|.|+++++.-. ..++...++.+.
T Consensus 83 ~~~~~~r~~~~----~~~~ig~S~h~~~e~~~a~~~-g~dYv~~------gpvf~T~sk~~~~~~g~~~l~~~~~~---- 147 (180)
T PF02581_consen 83 LPPAEARKLLG----PDKIIGASCHSLEEAREAEEL-GADYVFL------GPVFPTSSKPGAPPLGLDGLREIARA---- 147 (180)
T ss_dssp SSHHHHHHHHT----TTSEEEEEESSHHHHHHHHHC-TTSEEEE------ETSS--SSSSS-TTCHHHHHHHHHHH----
T ss_pred cchHHhhhhcc----cceEEEeecCcHHHHHHhhhc-CCCEEEE------CCccCCCCCccccccCHHHHHHHHHh----
Confidence 76655443332 244444569999999999986 9999998 456666655433 334444444443
Q ss_pred ccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccc
Q 015424 350 IIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESI 387 (407)
Q Consensus 350 ~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaL 387 (407)
..+++++.||| +++++..+.++|+++|.|.++|
T Consensus 148 ----~~~pv~AlGGI-~~~~i~~l~~~Ga~gvAvi~aI 180 (180)
T PF02581_consen 148 ----SPIPVYALGGI-TPENIPELREAGADGVAVISAI 180 (180)
T ss_dssp ----TSSCEEEESS---TTTHHHHHHTT-SEEEESHHH
T ss_pred ----CCCCEEEEcCC-CHHHHHHHHHcCCCEEEEEeeC
Confidence 24789999999 8999999999999999998765
No 79
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.86 E-value=1.6e-07 Score=99.81 Aligned_cols=186 Identities=13% Similarity=0.159 Sum_probs=124.1
Q ss_pred CCCCCCHHHHHHHHHHcCCcEEEEEecCCcCCC--CHHHHHHHHhcCCCC--c-------EEecc-ccC--C-HHHHHHH
Q 015424 193 LREDFDPVEIARSYEKGGAACLSILTDEKYFKG--SFENLEAVRSAGVKC--P-------LLCKE-FIV--D-AWQIYYA 257 (407)
Q Consensus 193 i~~~~dp~~iA~ay~~~GA~aISVLTd~~~F~G--s~edL~~Vr~a~v~l--P-------VL~KD-FIi--d-~~QI~eA 257 (407)
+.++.+..+..+.+.+.+...+=|+.+.+-+-| +..||...... ..- | +++.- ..+ + ...+.+.
T Consensus 178 v~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~-p~~~~~~~d~~~~l~vgaavg~~~~~~~r~~~l 256 (505)
T PLN02274 178 APAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY-PKLGKPSVGKDGKLLVGAAIGTRESDKERLEHL 256 (505)
T ss_pred ECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC-cCccccccCCCCCEEEEEEEcCCccHHHHHHHH
Confidence 455667788888999999999988876665666 55677666542 111 1 22221 112 2 2457777
Q ss_pred HHcCCCEEEEeccCCCHHHHHHHHHHHHHc--CCcEEE-EeCCHHHHHHHhcccCCcEEEeec-ccccccccccccc-c-
Q 015424 258 RTKGADAVLLIAAVLPDLDIRYMTKICKLL--GLTALV-EVHDEREMDRVLGIEGIELIGINN-RNLAISIFSYRTE-T- 331 (407)
Q Consensus 258 r~~GADaVLLiaaiL~~~~L~~Li~~a~~L--GL~aLV-EVht~eElerAl~l~Ga~iIGINn-RdL~~~~~~~t~~-T- 331 (407)
.++|+|.|.+.++-=.....-++++..++. ++.+++ .|.|.+++.++.++ |+|.|.+.+ ..+ ..+|.. +
T Consensus 257 ~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~a-GaD~i~vg~g~G~----~~~t~~~~~ 331 (505)
T PLN02274 257 VKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQA-GVDGLRVGMGSGS----ICTTQEVCA 331 (505)
T ss_pred HHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHc-CcCEEEECCCCCc----cccCccccc
Confidence 899999999998743222223566767763 688876 89999999999997 999997632 111 111111 0
Q ss_pred cc----cCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCC
Q 015424 332 FE----VDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD 392 (407)
Q Consensus 332 f~----vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~d 392 (407)
.. ..+....++++. .++++|++|||.++.|+.++..+||++|.||+.|..+..
T Consensus 332 ~g~~~~~~i~~~~~~~~~--------~~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~t~E 388 (505)
T PLN02274 332 VGRGQATAVYKVASIAAQ--------HGVPVIADGGISNSGHIVKALTLGASTVMMGSFLAGTTE 388 (505)
T ss_pred cCCCcccHHHHHHHHHHh--------cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhccccc
Confidence 00 112222233221 368999999999999999999999999999999987654
No 80
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=98.81 E-value=8.7e-08 Score=95.69 Aligned_cols=167 Identities=14% Similarity=0.114 Sum_probs=113.8
Q ss_pred HHHHHHHHHcCCcEEEEEecCCcCCCCHH----HHHHHHhcCCCCcEEeccccCC---HHHHHHHHHcCCCEEEEeccCC
Q 015424 200 VEIARSYEKGGAACLSILTDEKYFKGSFE----NLEAVRSAGVKCPLLCKEFIVD---AWQIYYARTKGADAVLLIAAVL 272 (407)
Q Consensus 200 ~~iA~ay~~~GA~aISVLTd~~~F~Gs~e----dL~~Vr~a~v~lPVL~KDFIid---~~QI~eAr~~GADaVLLiaaiL 272 (407)
.++|.+..++|+ +.++.-.. -+++ .|..+|+. ++.|+=..-+... ..++..+.+.|++.|.+.. -.
T Consensus 25 ~~la~avs~aGg--lG~l~~~~---~~~~~l~~~i~~~~~~-t~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~~-g~ 97 (307)
T TIGR03151 25 GSLAAAVSNAGG--LGIIGAGN---APPDVVRKEIRKVKEL-TDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTGA-GN 97 (307)
T ss_pred HHHHHHHHhCCC--cceecccc---CCHHHHHHHHHHHHHh-cCCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEcC-CC
Confidence 356666666663 44443210 1333 45666664 5666422212111 3456667899999998743 22
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccc
Q 015424 273 PDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIR 352 (407)
Q Consensus 273 ~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~ 352 (407)
+ ..+++..+..|+.++..|.+.++++++.++ |+|.|.+.+++- .+++.. ..++....++.+.
T Consensus 98 p----~~~i~~lk~~g~~v~~~v~s~~~a~~a~~~-GaD~Ivv~g~ea----gGh~g~--~~~~~ll~~v~~~------- 159 (307)
T TIGR03151 98 P----GKYIPRLKENGVKVIPVVASVALAKRMEKA-GADAVIAEGMES----GGHIGE--LTTMALVPQVVDA------- 159 (307)
T ss_pred c----HHHHHHHHHcCCEEEEEcCCHHHHHHHHHc-CCCEEEEECccc----CCCCCC--CcHHHHHHHHHHH-------
Confidence 2 236788888899999999999999999997 999999999866 222211 1234444444432
Q ss_pred cCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCC
Q 015424 353 QKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD 392 (407)
Q Consensus 353 ~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~d 392 (407)
-++++|+.|||.+++|+..+..+||++|.+|+.+.-...
T Consensus 160 -~~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~t~E 198 (307)
T TIGR03151 160 -VSIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLCAKE 198 (307)
T ss_pred -hCCCEEEECCCCCHHHHHHHHHcCCCEeecchHHhcccc
Confidence 257899999999999999999999999999999886553
No 81
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=98.81 E-value=5.7e-07 Score=86.22 Aligned_cols=191 Identities=14% Similarity=0.171 Sum_probs=132.6
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcC----CCCHHHHHHHHhcCCCCcEEeccccCCHHH-HHHHHHcCCCEEEEeccCC
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYF----KGSFENLEAVRSAGVKCPLLCKEFIVDAWQ-IYYARTKGADAVLLIAAVL 272 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F----~Gs~edL~~Vr~a~v~lPVL~KDFIid~~Q-I~eAr~~GADaVLLiaaiL 272 (407)
...+..+.+++.|++.+|+=--.+.| ..+++.++.+|+...++|+-.+=.+-+|+. +..+..+|||.|.+-+..-
T Consensus 20 ~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~Gad~itvH~ea~ 99 (228)
T PTZ00170 20 KLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGASQFTFHIEAT 99 (228)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHcCCCEEEEeccCC
Confidence 45566777889999999997655444 457899999998622889876666677775 5557889999998877654
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeC---CHHHHHHHhcccCCcEEEeecccccccccccccccccc-CchhHHHHhhcccc
Q 015424 273 PDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEV-DNSNTKKLLEGERG 348 (407)
Q Consensus 273 ~~~~L~~Li~~a~~LGL~aLVEVh---t~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~v-Dl~~t~~L~~~~~~ 348 (407)
. ..+.+.++.++++|+.+-+.+. +.++++..++....++|-+-..+ +|+....|.. .++...++.+.
T Consensus 100 ~-~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v~-----pG~~gq~~~~~~~~ki~~~~~~--- 170 (228)
T PTZ00170 100 E-DDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVE-----PGFGGQSFMHDMMPKVRELRKR--- 170 (228)
T ss_pred c-hHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHhhhcc-----cCCCCcEecHHHHHHHHHHHHh---
Confidence 3 2378899999999988877765 55666655533234555221111 1222233321 12333344332
Q ss_pred cccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 349 EIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 349 ~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
+ + ++.+-.-||| +++.+..+.++|+|.++||++|++++||.++++++..
T Consensus 171 --~-~-~~~I~VdGGI-~~~ti~~~~~aGad~iVvGsaI~~a~d~~~~~~~i~~ 219 (228)
T PTZ00170 171 --Y-P-HLNIQVDGGI-NLETIDIAADAGANVIVAGSSIFKAKDRKQAIELLRE 219 (228)
T ss_pred --c-c-cCeEEECCCC-CHHHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHH
Confidence 1 2 3567788999 8899999999999999999999999999998888753
No 82
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=98.80 E-value=2e-07 Score=92.27 Aligned_cols=167 Identities=17% Similarity=0.196 Sum_probs=112.2
Q ss_pred HHHHHHHHHHcCCcE-EEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccC-CHH----HHHHHHHcCCCEEEEeccCC
Q 015424 199 PVEIARSYEKGGAAC-LSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIV-DAW----QIYYARTKGADAVLLIAAVL 272 (407)
Q Consensus 199 p~~iA~ay~~~GA~a-ISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIi-d~~----QI~eAr~~GADaVLLiaaiL 272 (407)
-..+|++..+.|+.. ++-.+ ..+++++... .+-|+...-|.- +++ .+..+...|+|+|.+.....
T Consensus 83 ~~~la~aa~~~g~~~~~~~~~-----~~~~~~i~~~----~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p 153 (299)
T cd02809 83 ELATARAAAAAGIPFTLSTVS-----TTSLEEVAAA----APGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTP 153 (299)
T ss_pred HHHHHHHHHHcCCCEEecCCC-----cCCHHHHHHh----cCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 368899999988644 34322 2456655433 235777766654 555 45556788999999976654
Q ss_pred C------HHHHHHHHHHHHHcCCcEE-EEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhc
Q 015424 273 P------DLDIRYMTKICKLLGLTAL-VEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEG 345 (407)
Q Consensus 273 ~------~~~L~~Li~~a~~LGL~aL-VEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~ 345 (407)
. .+.++++ .+..++.++ -+|.+.+++.++.++ |++.|.+.|+.- .....-..++....++.+.
T Consensus 154 ~~~~~~~~~~i~~l---~~~~~~pvivK~v~s~~~a~~a~~~-G~d~I~v~~~gG------~~~~~g~~~~~~l~~i~~~ 223 (299)
T cd02809 154 VLGRRLTWDDLAWL---RSQWKGPLILKGILTPEDALRAVDA-GADGIVVSNHGG------RQLDGAPATIDALPEIVAA 223 (299)
T ss_pred CCCCCCCHHHHHHH---HHhcCCCEEEeecCCHHHHHHHHHC-CCCEEEEcCCCC------CCCCCCcCHHHHHHHHHHH
Confidence 3 2233333 334566654 568999999999997 999999987532 0001112233333444332
Q ss_pred ccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015424 346 ERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 390 (407)
Q Consensus 346 ~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~ 390 (407)
+ ++++++|+.|||.+..|+.++..+|||+|.||+.++..
T Consensus 224 -----~-~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~ 262 (299)
T cd02809 224 -----V-GGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYG 262 (299)
T ss_pred -----h-cCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHH
Confidence 1 23589999999999999999999999999999998864
No 83
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.79 E-value=2.2e-07 Score=98.07 Aligned_cols=182 Identities=15% Similarity=0.147 Sum_probs=128.4
Q ss_pred CCCCCCHHHHHHHHHHcCCcEEEEEecCCcCCC--CHHHHHHHHhcCCCCcE-------Eecccc---CCHHH-HHHHHH
Q 015424 193 LREDFDPVEIARSYEKGGAACLSILTDEKYFKG--SFENLEAVRSAGVKCPL-------LCKEFI---VDAWQ-IYYART 259 (407)
Q Consensus 193 i~~~~dp~~iA~ay~~~GA~aISVLTd~~~F~G--s~edL~~Vr~a~v~lPV-------L~KDFI---id~~Q-I~eAr~ 259 (407)
+.++....+..+.+.+.+...+-|+.+.+-+.| +..||...+.. + |. ...+.+ -+..+ +.....
T Consensus 159 v~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~--~-~~~d~~grl~Vgaav~~~~~~~~ra~~Lv~ 235 (475)
T TIGR01303 159 APADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIY--T-PATDAAGRLRIGAAVGINGDVGGKAKALLD 235 (475)
T ss_pred eCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhC--C-chhhhccCceehheeeeCccHHHHHHHHHH
Confidence 345667777888889999998888765554555 45666555432 2 32 111111 12223 334467
Q ss_pred cCCCEEEEeccCCCHHHHHHHHHHHHHc--CCcEEEE-eCCHHHHHHHhcccCCcEEE--------eecccccccccccc
Q 015424 260 KGADAVLLIAAVLPDLDIRYMTKICKLL--GLTALVE-VHDEREMDRVLGIEGIELIG--------INNRNLAISIFSYR 328 (407)
Q Consensus 260 ~GADaVLLiaaiL~~~~L~~Li~~a~~L--GL~aLVE-Vht~eElerAl~l~Ga~iIG--------INnRdL~~~~~~~t 328 (407)
.|+|.|.+.++---.....++++..+.. ++.+++- |.|.+++..+.++ |++.|. .|.|.+ ++.++
T Consensus 236 aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~-G~d~i~vg~g~Gs~~ttr~~--~~~g~- 311 (475)
T TIGR01303 236 AGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEA-GANIIKVGVGPGAMCTTRMM--TGVGR- 311 (475)
T ss_pred hCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHh-CCCEEEECCcCCccccCccc--cCCCC-
Confidence 8999999999986566778888888875 8999999 9999999999997 999998 556655 22222
Q ss_pred ccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015424 329 TETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 391 (407)
Q Consensus 329 ~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 391 (407)
.+++.+++....+.+ .++.+||+|||+++.|+.+...+||++|.+|+.|-...
T Consensus 312 -~~~~a~~~~~~~~~~---------~~~~viadGgi~~~~di~kala~GA~~vm~g~~~ag~~ 364 (475)
T TIGR01303 312 -PQFSAVLECAAEARK---------LGGHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTY 364 (475)
T ss_pred -chHHHHHHHHHHHHH---------cCCcEEEeCCCCCHHHHHHHHHcCCCEEeechhhcccc
Confidence 234444444433322 36899999999999999999999999999999886443
No 84
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.79 E-value=1.7e-07 Score=98.91 Aligned_cols=186 Identities=15% Similarity=0.138 Sum_probs=130.6
Q ss_pred CCCCCCHHHHHHHHHHcCCcEEEEEecCCcCCC--CHHHHHHHHhcCCCCcEE-------ecccc-C---CHHHHHHHHH
Q 015424 193 LREDFDPVEIARSYEKGGAACLSILTDEKYFKG--SFENLEAVRSAGVKCPLL-------CKEFI-V---DAWQIYYART 259 (407)
Q Consensus 193 i~~~~dp~~iA~ay~~~GA~aISVLTd~~~F~G--s~edL~~Vr~a~v~lPVL-------~KDFI-i---d~~QI~eAr~ 259 (407)
+.++....+....+.+.+...+-|+.+.+-+-| +..||...... + |.. +..-+ + ++..+.....
T Consensus 161 V~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~--~-~~~~~~g~l~V~aav~~~~~~~~~a~~Lv~ 237 (479)
T PRK07807 161 LPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIY--T-PAVDAAGRLRVAAAVGINGDVAAKARALLE 237 (479)
T ss_pred ECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC--C-chhhhhhccchHhhhccChhHHHHHHHHHH
Confidence 455667778888888889998888776555556 45666555432 2 321 11111 1 1223344467
Q ss_pred cCCCEEEEeccCCCHHHHHHHHHHHHHc--CCcEEE-EeCCHHHHHHHhcccCCcEEEeeccccccccccccccc----c
Q 015424 260 KGADAVLLIAAVLPDLDIRYMTKICKLL--GLTALV-EVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTET----F 332 (407)
Q Consensus 260 ~GADaVLLiaaiL~~~~L~~Li~~a~~L--GL~aLV-EVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~T----f 332 (407)
.|+|.|.+.++--....+.++++..++. ++++++ .|.|.+++..+.++ ||+.|+|. ++||..-|+.- -
T Consensus 238 aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~a-Gad~v~vg----ig~gsictt~~~~~~~ 312 (479)
T PRK07807 238 AGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEA-GADIVKVG----VGPGAMCTTRMMTGVG 312 (479)
T ss_pred hCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHc-CCCEEEEC----ccCCcccccccccCCc
Confidence 8999999999887777778888888864 899999 99999999999997 99998852 22222111111 1
Q ss_pred ccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015424 333 EVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 391 (407)
Q Consensus 333 ~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 391 (407)
.+++....++.+... ..++++|++|||+++.|+.++..+||++|.||+.|....
T Consensus 313 ~p~~~av~~~~~~~~-----~~~~~via~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~ 366 (479)
T PRK07807 313 RPQFSAVLECAAAAR-----ELGAHVWADGGVRHPRDVALALAAGASNVMIGSWFAGTY 366 (479)
T ss_pred hhHHHHHHHHHHHHH-----hcCCcEEecCCCCCHHHHHHHHHcCCCeeeccHhhccCc
Confidence 156666666665311 247899999999999999999999999999999987654
No 85
>PRK08005 epimerase; Validated
Probab=98.77 E-value=1.2e-06 Score=83.51 Aligned_cols=195 Identities=11% Similarity=0.139 Sum_probs=134.1
Q ss_pred CCCcCCCCCC-CCHHHHHHHHHHcCCcEEEEEecCCcCC----CCHHHHHHHHhcCCCCcEEeccccCCHHH-HHHHHHc
Q 015424 187 SPSRGILRED-FDPVEIARSYEKGGAACLSILTDEKYFK----GSFENLEAVRSAGVKCPLLCKEFIVDAWQ-IYYARTK 260 (407)
Q Consensus 187 SPSkG~i~~~-~dp~~iA~ay~~~GA~aISVLTd~~~F~----Gs~edL~~Vr~a~v~lPVL~KDFIid~~Q-I~eAr~~ 260 (407)
|||- +..+ ....+..+.++++|++.||+=--.+.|- =++..++.+|+. +++|+=+-=-+.+|.+ |.+...+
T Consensus 4 ~pSi--l~ad~~~l~~el~~l~~~g~d~lHiDvMDG~FVPN~tfG~~~i~~l~~~-t~~~~DvHLMv~~P~~~i~~~~~~ 80 (210)
T PRK08005 4 HPSL--ASADPLRYAEALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQQ-TRHPLSFHLMVSSPQRWLPWLAAI 80 (210)
T ss_pred Eeeh--hhCCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHHHhc-CCCCeEEEeccCCHHHHHHHHHHh
Confidence 5663 3333 2455667778899999999987666662 367899999986 7888533223444654 6667889
Q ss_pred CCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHHHHhcccCCcEEEeeccccccccccccccccccC-c
Q 015424 261 GADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVD-N 336 (407)
Q Consensus 261 GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVh---t~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vD-l 336 (407)
|||.|.+-..... .+.++++.++++|+.+-+=+. ..+.++..+.. .|.|-|=.-+- |+....|..+ +
T Consensus 81 gad~It~H~Ea~~--~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~--vD~VlvMsV~P-----Gf~GQ~f~~~~~ 151 (210)
T PRK08005 81 RPGWIFIHAESVQ--NPSEILADIRAIGAKAGLALNPATPLLPYRYLALQ--LDALMIMTSEP-----DGRGQQFIAAMC 151 (210)
T ss_pred CCCEEEEcccCcc--CHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHh--cCEEEEEEecC-----CCccceecHHHH
Confidence 9999999877643 467899999999999966665 56666666542 45444322222 3333555432 2
Q ss_pred hhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhh
Q 015424 337 SNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 401 (407)
Q Consensus 337 ~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~ 401 (407)
+...++.+. + + ...+-.-||| +.+.+..+.++|||.+++|++|++.+|+.+.++.|-
T Consensus 152 ~KI~~l~~~-----~-~-~~~I~VDGGI-~~~~i~~l~~aGad~~V~GsaiF~~~d~~~~~~~~~ 208 (210)
T PRK08005 152 EKVSQSREH-----F-P-AAECWADGGI-TLRAARLLAAAGAQHLVIGRALFTTANYDVTLSQFT 208 (210)
T ss_pred HHHHHHHHh-----c-c-cCCEEEECCC-CHHHHHHHHHCCCCEEEEChHhhCCCCHHHHHHHHh
Confidence 333344332 1 1 2347789999 799999999999999999999999999999888774
No 86
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=98.77 E-value=4e-07 Score=91.62 Aligned_cols=204 Identities=19% Similarity=0.175 Sum_probs=136.7
Q ss_pred ceEEEEecccCCCc-CCCCCCCCHHHHHHHHHHcCCcEEEEEecCCcC--CCCHHHHHHHHhcCCCCcEE---eccccCC
Q 015424 177 PALIAEVKKASPSR-GILREDFDPVEIARSYEKGGAACLSILTDEKYF--KGSFENLEAVRSAGVKCPLL---CKEFIVD 250 (407)
Q Consensus 177 ~~vIAEvKraSPSk-G~i~~~~dp~~iA~ay~~~GA~aISVLTd~~~F--~Gs~edL~~Vr~a~v~lPVL---~KDFIid 250 (407)
+-.|+-.+-.|--- |- -..-++..+.++.+..|+..+-|---..-+ .|....+..++.. .+-+| ..-+--.
T Consensus 74 ~~~i~~~~~~sRl~~Gt-g~y~s~~~~~~a~~asg~e~vTva~rr~~~~~~~~~~~~~~~~~~--~~~~lpNTag~~ta~ 150 (326)
T PRK11840 74 SWTVAGKTFSSRLLVGT-GKYKDFEETAAAVEASGAEIVTVAVRRVNVSDPGAPMLTDYIDPK--KYTYLPNTAGCYTAE 150 (326)
T ss_pred CeEECCEEEecceeEec-CCCCCHHHHHHHHHHhCCCEEEEEEEeecCcCCCcchHHHhhhhc--CCEECccCCCCCCHH
Confidence 34566655555321 11 124489999999999999888664322222 3445566667643 44455 1111111
Q ss_pred H-HHH-HHHHHc-CCCEEEEecc---CCCHHHHHHHHHHHHHc---CCcE-EEEeCCHHHHHHHhcccCCcEEEeec-cc
Q 015424 251 A-WQI-YYARTK-GADAVLLIAA---VLPDLDIRYMTKICKLL---GLTA-LVEVHDEREMDRVLGIEGIELIGINN-RN 319 (407)
Q Consensus 251 ~-~QI-~eAr~~-GADaVLLiaa---iL~~~~L~~Li~~a~~L---GL~a-LVEVht~eElerAl~l~Ga~iIGINn-Rd 319 (407)
+ ..+ ..||++ |-|-|=|=+- -+.-.|..++++.|+.| |+++ .++..|..+..++.++ |+ +.+-. -.
T Consensus 151 eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~-g~--~avmPl~~ 227 (326)
T PRK11840 151 EAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDA-GA--VAVMPLGA 227 (326)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhc-CC--EEEeeccc
Confidence 1 111 125555 6677665221 11224678899999999 9999 8888899999999998 87 54544 56
Q ss_pred cccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHh
Q 015424 320 LAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITG 399 (407)
Q Consensus 320 L~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~ 399 (407)
+||++.|.+ |++....+.+. .++++|.-+||.+++|+..++++||||||+-+++++++||..-.+.
T Consensus 228 pIGsg~gv~------~p~~i~~~~e~--------~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A 293 (326)
T PRK11840 228 PIGSGLGIQ------NPYTIRLIVEG--------ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARA 293 (326)
T ss_pred cccCCCCCC------CHHHHHHHHHc--------CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHH
Confidence 777666654 55555555543 3589999999999999999999999999999999999999865544
Q ss_pred h
Q 015424 400 L 400 (407)
Q Consensus 400 L 400 (407)
+
T Consensus 294 ~ 294 (326)
T PRK11840 294 M 294 (326)
T ss_pred H
Confidence 4
No 87
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.77 E-value=9.5e-08 Score=98.91 Aligned_cols=128 Identities=13% Similarity=0.163 Sum_probs=92.9
Q ss_pred HHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHH-c-CCcEEE-EeCCHHHHHHHhcccCCcEEEeeccccccccccccc
Q 015424 253 QIYYARTKGADAVLLIAAVLPDLDIRYMTKICKL-L-GLTALV-EVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRT 329 (407)
Q Consensus 253 QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~-L-GL~aLV-EVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~ 329 (407)
.+.+..++|||.|.++++--....+.++++..++ + ++..++ .|.|.+++..++++ |++.|.+- + +++..-++
T Consensus 157 ~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a-GaD~I~vG---~-g~Gs~c~t 231 (404)
T PRK06843 157 RVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV-GADCLKVG---I-GPGSICTT 231 (404)
T ss_pred HHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc-CCCEEEEC---C-CCCcCCcc
Confidence 5666778999999999988656677788877776 3 677766 99999999999998 99998862 1 11111111
Q ss_pred c---ccc-cCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015424 330 E---TFE-VDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 390 (407)
Q Consensus 330 ~---Tf~-vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~ 390 (407)
. ... +++.....+.+.. ...++++|++|||+++.|+.++..+||++|.||++|...
T Consensus 232 r~~~g~g~p~ltai~~v~~~~-----~~~~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~agt 291 (404)
T PRK06843 232 RIVAGVGVPQITAICDVYEVC-----KNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGT 291 (404)
T ss_pred eeecCCCCChHHHHHHHHHHH-----hhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeeee
Confidence 1 111 2333333333221 123689999999999999999999999999999999984
No 88
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=98.75 E-value=6.7e-08 Score=106.92 Aligned_cols=177 Identities=17% Similarity=0.202 Sum_probs=121.1
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHH-HHHH------hcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEecc
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENL-EAVR------SAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA 270 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL-~~Vr------~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa 270 (407)
+..+..+...++|+++|-+- ++. .+.+.+ ..++ +. .+++++..|. ++ .|..+|+| |+|...
T Consensus 20 ~~~~~l~~~l~~g~~~iqlR-~K~---~~~~~~~~~a~~l~~l~~~-~~~~liind~----~~--la~~~~~d-VHlg~~ 87 (755)
T PRK09517 20 KVAGIVDSAISGGVSVVQLR-DKN---AGVEDVRAAAKELKELCDA-RGVALVVNDR----LD--VAVELGLH-VHIGQG 87 (755)
T ss_pred cHHHHHHHHHhcCCCEEEEe-CCC---CCHHHHHHHHHHHHHHHHH-hCCeEEEeCh----HH--HHHHcCCC-eecCCC
Confidence 34556666667888887764 222 232222 2222 22 3578877773 44 48889999 999987
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHh----cc--cCCcEEEeeccccccccccccccccc---cCchhHHH
Q 015424 271 VLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVL----GI--EGIELIGINNRNLAISIFSYRTETFE---VDNSNTKK 341 (407)
Q Consensus 271 iL~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl----~l--~Ga~iIGINnRdL~~~~~~~t~~Tf~---vDl~~t~~ 341 (407)
.++....+.++. -++-.=+-|||.+|++.+. .+ .|+++|++ +|.++++++.-. ..++...+
T Consensus 88 dl~~~~~r~~~~----~~~~iG~S~h~~~e~~~~~~~~~~~g~~gaDYi~~------Gpvf~T~tK~~~~~~lG~~~l~~ 157 (755)
T PRK09517 88 DTPYTQARRLLP----AHLELGLTIETLDQLEAVIAQCAETGVALPDVIGI------GPVASTATKPDAPPALGVDGIAE 157 (755)
T ss_pred cCCHHHHHHhcC----CCCEEEEeCCCHHHHHHHHhhhccCCCCCCCEEEE------CCccccCCCCCCCCCCCHHHHHH
Confidence 776544433321 1233445699999997753 22 04899998 466777666432 46667777
Q ss_pred HhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 342 LLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 342 L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
+.+... ..++++++.||| +++++..+.++|+++|.|.++||+++||.+++++|..
T Consensus 158 ~~~~~~-----~~~iPv~AiGGI-~~~~~~~~~~~Ga~giAvisai~~a~d~~~a~~~l~~ 212 (755)
T PRK09517 158 IAAVAQ-----DHGIASVAIGGV-GLRNAAELAATGIDGLCVVSAIMAAANPAAAARELRT 212 (755)
T ss_pred HHHhcC-----cCCCCEEEECCC-CHHHHHHHHHcCCCEEEEehHhhCCCCHHHHHHHHHH
Confidence 765421 114899999999 9999999999999999999999999999999998864
No 89
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=98.75 E-value=4.2e-07 Score=87.59 Aligned_cols=190 Identities=23% Similarity=0.221 Sum_probs=144.9
Q ss_pred CCCCCCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHH---hcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEec
Q 015424 193 LREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVR---SAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA 269 (407)
Q Consensus 193 i~~~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr---~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLia 269 (407)
++..-||+++|+.|.+.||+-|-.|+=.-...|.--++..|. +. +.+|+-....|.+...+.....+|||-|=+++
T Consensus 26 lrd~GDpVelA~~Y~e~GADElvFlDItAs~~gr~~~~~vv~r~A~~-vfiPltVGGGI~s~eD~~~ll~aGADKVSINs 104 (256)
T COG0107 26 LRDAGDPVELAKRYNEEGADELVFLDITASSEGRETMLDVVERVAEQ-VFIPLTVGGGIRSVEDARKLLRAGADKVSINS 104 (256)
T ss_pred hhhcCChHHHHHHHHHcCCCeEEEEecccccccchhHHHHHHHHHhh-ceeeeEecCCcCCHHHHHHHHHcCCCeeeeCh
Confidence 456679999999999999999999977777777666666555 43 78999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCcEEE----------------EeC-----------CHHHHHHHhcccCCcEEEeecccccc
Q 015424 270 AVLPDLDIRYMTKICKLLGLTALV----------------EVH-----------DEREMDRVLGIEGIELIGINNRNLAI 322 (407)
Q Consensus 270 aiL~~~~L~~Li~~a~~LGL~aLV----------------EVh-----------t~eElerAl~l~Ga~iIGINnRdL~~ 322 (407)
+.+.+.+| +-+.+..+|-+++| +|. ..+=+.++.++ ||-=|=.|.-|--+
T Consensus 105 aAv~~p~l--I~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~-GAGEIlLtsmD~DG 181 (256)
T COG0107 105 AAVKDPEL--ITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVEEL-GAGEILLTSMDRDG 181 (256)
T ss_pred hHhcChHH--HHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHHHc-CCceEEEeeecccc
Confidence 99988776 66778888888744 221 11223445555 66544454443311
Q ss_pred ccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcC-CCEEEEcccccCCCChHHHHHhhh
Q 015424 323 SIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAG-VKAVLVGESIVKQDDPGKGITGLF 401 (407)
Q Consensus 323 ~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~G-adaVLVGeaLmk~~dp~~~i~~L~ 401 (407)
+.-..|++.+..+.+. -++++||.||-.+++|...+...| +||+|-.+-+....-...-+++.+
T Consensus 182 -------tk~GyDl~l~~~v~~~--------v~iPvIASGGaG~~ehf~eaf~~~~adAaLAAsiFH~~~~~i~evK~yL 246 (256)
T COG0107 182 -------TKAGYDLELTRAVREA--------VNIPVIASGGAGKPEHFVEAFTEGKADAALAASIFHFGEITIGEVKEYL 246 (256)
T ss_pred -------cccCcCHHHHHHHHHh--------CCCCEEecCCCCcHHHHHHHHHhcCccHHHhhhhhhcCcccHHHHHHHH
Confidence 3445688888877665 368999999999999999999887 999999988887776666666554
No 90
>PRK08999 hypothetical protein; Provisional
Probab=98.74 E-value=5.4e-08 Score=95.97 Aligned_cols=199 Identities=18% Similarity=0.174 Sum_probs=122.5
Q ss_pred CChHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEEecCC---
Q 015424 145 RPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEK--- 221 (407)
Q Consensus 145 ~pl~~l~~~~~~~~~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVLTd~~--- 221 (407)
+|++++.+ +...++.+.+.+.|.- ..+.+|..=.. .| ..+..+.++....+|+++|..-. +.
T Consensus 106 v~~~el~~-~~~~~~~~~i~~~l~l-----p~ly~it~~~~-~~-------~~~~~~~~~~~l~~g~~~vqlR~-k~~~~ 170 (312)
T PRK08999 106 VAPDELAV-YPFPPANQPIVRALRL-----PDTYLITPEGE-DG-------DAAFLARLERALAAGIRLIQLRA-PQLPP 170 (312)
T ss_pred ecHHHccc-CCCCcchHHHHHHhcC-----CCEEEEECccc-cc-------cHHHHHHHHHHHHCCCcEEEEeC-CCCCH
Confidence 45555443 2333444556655532 24566665221 11 11334556566688988877632 11
Q ss_pred -cCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHc--CCcEEEEeCCH
Q 015424 222 -YFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLL--GLTALVEVHDE 298 (407)
Q Consensus 222 -~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~L--GL~aLVEVht~ 298 (407)
.+..-...+..+.+. .++|++-.|+ +++ |..+|||+|+|....++.... +.+ ++-.=+-|||.
T Consensus 171 ~~~~~~~~~l~~~~~~-~~~~liind~----~~l--a~~~~~~GvHl~~~d~~~~~~-------r~~~~~~~ig~S~h~~ 236 (312)
T PRK08999 171 AAYRALARAALGLCRR-AGAQLLLNGD----PEL--AEDLGADGVHLTSAQLAALAA-------RPLPAGRWVAASCHDA 236 (312)
T ss_pred HHHHHHHHHHHHHHHH-hCCEEEEECc----HHH--HHhcCCCEEEcChhhcChHhh-------ccCCCCCEEEEecCCH
Confidence 011111222222222 3577777664 344 888999999998766543222 223 33444568999
Q ss_pred HHHHHHhcccCCcEEEeecccccccccccccccc--ccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHc
Q 015424 299 REMDRVLGIEGIELIGINNRNLAISIFSYRTETF--EVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEA 376 (407)
Q Consensus 299 eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf--~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~ 376 (407)
+|+.+|.+. |+++|++ +|.|.++++.. ...++...++.+. .+++++|.||| +++++..++++
T Consensus 237 ~~~~~a~~~-~~dyi~~------gpvf~t~tk~~~~~~g~~~~~~~~~~--------~~~Pv~AiGGI-~~~~~~~~~~~ 300 (312)
T PRK08999 237 EELARAQRL-GVDFAVL------SPVQPTASHPGAAPLGWEGFAALIAG--------VPLPVYALGGL-GPGDLEEAREH 300 (312)
T ss_pred HHHHHHHhc-CCCEEEE------CCCcCCCCCCCCCCCCHHHHHHHHHh--------CCCCEEEECCC-CHHHHHHHHHh
Confidence 999999997 9999998 46666665532 2344555555443 35799999999 99999999999
Q ss_pred CCCEEEEccccc
Q 015424 377 GVKAVLVGESIV 388 (407)
Q Consensus 377 GadaVLVGeaLm 388 (407)
|+++|-|-++|+
T Consensus 301 g~~gva~i~~~~ 312 (312)
T PRK08999 301 GAQGIAGIRGLW 312 (312)
T ss_pred CCCEEEEEEEeC
Confidence 999999987763
No 91
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=98.72 E-value=1.7e-06 Score=85.73 Aligned_cols=150 Identities=14% Similarity=0.161 Sum_probs=117.4
Q ss_pred CCCcEE-eccccCCHHHHHHHHHcCCCEEEEeccCCCHHHH----HHHHHHHHHcCCcE---------------E--EEe
Q 015424 238 VKCPLL-CKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDI----RYMTKICKLLGLTA---------------L--VEV 295 (407)
Q Consensus 238 v~lPVL-~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L----~~Li~~a~~LGL~a---------------L--VEV 295 (407)
.++||- .-|-..|...+.+|...|.+.|.+..+-++.++. +++.++|+.+|..+ + +-+
T Consensus 73 ~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~ 152 (281)
T PRK06806 73 AKVPVAVHFDHGMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLL 152 (281)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCccccccee
Confidence 478874 6677778889999999999999999999987553 44666777765544 1 127
Q ss_pred CCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEee--CCCCHHHHHHH
Q 015424 296 HDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGES--GLFTPDDIAYV 373 (407)
Q Consensus 296 ht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAES--GI~t~eD~~~l 373 (407)
||.+|+.++.+..|+|++++. +|+.+++.+....++++...++.+. -++++|+-| || +.+++.++
T Consensus 153 t~~eea~~f~~~tg~DyLAva----iG~~hg~~~~~~~l~~~~L~~i~~~--------~~iPlV~hG~SGI-~~e~~~~~ 219 (281)
T PRK06806 153 TSTTEAKRFAEETDVDALAVA----IGNAHGMYNGDPNLRFDRLQEINDV--------VHIPLVLHGGSGI-SPEDFKKC 219 (281)
T ss_pred CCHHHHHHHHHhhCCCEEEEc----cCCCCCCCCCCCccCHHHHHHHHHh--------cCCCEEEECCCCC-CHHHHHHH
Confidence 999999998753499999996 3444554444456788888888764 246777777 99 89999999
Q ss_pred HHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 374 QEAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 374 ~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
.++|+++|-|+++|+. ++.+++++++.
T Consensus 220 i~~G~~kinv~T~i~~--a~~~a~~~~~~ 246 (281)
T PRK06806 220 IQHGIRKINVATATFN--SVITAVNNLVL 246 (281)
T ss_pred HHcCCcEEEEhHHHHH--HHHHHHHHHHH
Confidence 9999999999999998 69999999875
No 92
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=98.70 E-value=3.3e-06 Score=81.20 Aligned_cols=201 Identities=17% Similarity=0.192 Sum_probs=135.5
Q ss_pred CCCcCCCCCC-CCHHHHHHHHHHcCCcEEEEEecCCcCCC----CHHHHHHHHhcCCCCcEEeccccCCHHH-HHHHHHc
Q 015424 187 SPSRGILRED-FDPVEIARSYEKGGAACLSILTDEKYFKG----SFENLEAVRSAGVKCPLLCKEFIVDAWQ-IYYARTK 260 (407)
Q Consensus 187 SPSkG~i~~~-~dp~~iA~ay~~~GA~aISVLTd~~~F~G----s~edL~~Vr~a~v~lPVL~KDFIid~~Q-I~eAr~~ 260 (407)
||| .+..+ .+..+..+.++++|++.||+=--++.|-- +++.++.+|+..+++|+=+-=-+.+|.+ |.....+
T Consensus 7 ~pS--il~ad~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN~tfg~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~~~ 84 (223)
T PRK08745 7 APS--ILSADFARLGEEVDNVLKAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHGITAPIDVHLMVEPVDRIVPDFADA 84 (223)
T ss_pred Eee--hhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcccCHHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHHHh
Confidence 576 34433 25556677788999999999876666643 5678999997424788544334445654 5566788
Q ss_pred CCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHHHHhcccCCcEEEeeccccccccccccccccccC-c
Q 015424 261 GADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVD-N 336 (407)
Q Consensus 261 GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVh---t~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vD-l 336 (407)
|||.|.+-+.... .+.++++.++++|+.+=+=+. ..+.++..+.. +|.|-+=.-|- |+....|..+ +
T Consensus 85 gad~I~~H~Ea~~--~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~--vD~VlvMtV~P-----Gf~GQ~fi~~~l 155 (223)
T PRK08745 85 GATTISFHPEASR--HVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPE--LDLVLVMSVNP-----GFGGQAFIPSAL 155 (223)
T ss_pred CCCEEEEcccCcc--cHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhh--cCEEEEEEECC-----CCCCccccHHHH
Confidence 9999999877643 477889999999998854443 45556656653 45443322222 3334556442 2
Q ss_pred hhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 337 SNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 337 ~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
+...++.+..... ..++.+=.-||| +.+.+..+.++|+|.+++|++|++.+|+.+.+++|..
T Consensus 156 ~KI~~l~~~~~~~---~~~~~IeVDGGI-~~eti~~l~~aGaDi~V~GSaiF~~~d~~~~~~~lr~ 217 (223)
T PRK08745 156 DKLRAIRKKIDAL---GKPIRLEIDGGV-KADNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQMRA 217 (223)
T ss_pred HHHHHHHHHHHhc---CCCeeEEEECCC-CHHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHH
Confidence 3333333321110 124567789999 7999999999999999999999999999999988864
No 93
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.69 E-value=6.5e-07 Score=93.70 Aligned_cols=184 Identities=15% Similarity=0.151 Sum_probs=126.2
Q ss_pred CCCCCCHHHHHHHHHHcCCcEEEEEecCCcCCC--CHHHHHHHHhcCCCCcEEecc----------ccCCH---HHHHHH
Q 015424 193 LREDFDPVEIARSYEKGGAACLSILTDEKYFKG--SFENLEAVRSAGVKCPLLCKE----------FIVDA---WQIYYA 257 (407)
Q Consensus 193 i~~~~dp~~iA~ay~~~GA~aISVLTd~~~F~G--s~edL~~Vr~a~v~lPVL~KD----------FIid~---~QI~eA 257 (407)
+.++.+..+..+.+.+.+...+-|+.+.+-+.| +.+||-.... -|-.+|| .-+.+ ..+...
T Consensus 157 V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~----~~~~~~d~~g~l~V~aav~~~~~~~~r~~~L 232 (450)
T TIGR01302 157 VPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK----FPHASKDENGRLIVGAAVGTREFDKERAEAL 232 (450)
T ss_pred ECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc----CCcceEeCCCCEEEEEEecCchhHHHHHHHH
Confidence 345567778888899999999999888777777 5566654432 1333332 11222 244556
Q ss_pred HHcCCCEEEEeccCCCHHHHHHHHHHHHHc--CCcEEE-EeCCHHHHHHHhcccCCcEEEeeccccccccccccccccc-
Q 015424 258 RTKGADAVLLIAAVLPDLDIRYMTKICKLL--GLTALV-EVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFE- 333 (407)
Q Consensus 258 r~~GADaVLLiaaiL~~~~L~~Li~~a~~L--GL~aLV-EVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~- 333 (407)
.++|+|.|.+.++--....+.++++..++. .+.+++ .|-|.+++..+.++ |++.|.+.+ ++|++-.|-.
T Consensus 233 ~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~a-Gad~i~vg~------g~G~~~~t~~~ 305 (450)
T TIGR01302 233 VKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDA-GADGLRVGI------GPGSICTTRIV 305 (450)
T ss_pred HHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHh-CCCEEEECC------CCCcCCcccee
Confidence 788999999988655445566666666553 788888 99999999999998 999998742 1222212211
Q ss_pred -----cCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCC
Q 015424 334 -----VDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD 392 (407)
Q Consensus 334 -----vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~d 392 (407)
+.+....++.+.. ...++++|++|||+++.|+.++..+||++|.||+.|.....
T Consensus 306 ~~~g~p~~~~i~~~~~~~-----~~~~vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~~~e 364 (450)
T TIGR01302 306 AGVGVPQITAVYDVAEYA-----AQSGIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGTTE 364 (450)
T ss_pred cCCCccHHHHHHHHHHHH-----hhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcCCc
Confidence 1222223333221 12468999999999999999999999999999999987654
No 94
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=98.69 E-value=1.2e-06 Score=83.71 Aligned_cols=159 Identities=24% Similarity=0.331 Sum_probs=115.5
Q ss_pred HHHHHHHHhcCCCCcEEeccccCCH--HHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEE---eCCHHHH
Q 015424 227 FENLEAVRSAGVKCPLLCKEFIVDA--WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVE---VHDEREM 301 (407)
Q Consensus 227 ~edL~~Vr~a~v~lPVL~KDFIid~--~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVE---Vht~eEl 301 (407)
.+-++.+|+...+-+|++-==+.|. +....|..+|||.+..++.. ++..++..++.|+++|.++++| +.|.++.
T Consensus 44 ~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~~tV~g~A-~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~ 122 (217)
T COG0269 44 MRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADWVTVLGAA-DDATIKKAIKVAKEYGKEVQIDLIGVWDPEQR 122 (217)
T ss_pred HHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCEEEEEecC-CHHHHHHHHHHHHHcCCeEEEEeecCCCHHHH
Confidence 3566677765467788864334444 45666899999999886544 5678999999999999999665 5677777
Q ss_pred HHHhc-ccCCcEEEee-cccccccccccccccc-ccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCC
Q 015424 302 DRVLG-IEGIELIGIN-NRNLAISIFSYRTETF-EVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGV 378 (407)
Q Consensus 302 erAl~-l~Ga~iIGIN-nRdL~~~~~~~t~~Tf-~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~Ga 378 (407)
.+-++ + |++++.+- +||. -....++ .-|++..+++.+ .+..+=..||| +++++..+...|+
T Consensus 123 ~~~l~~~-gvd~~~~H~g~D~-----q~~G~~~~~~~l~~ik~~~~---------~g~~vAVaGGI-~~~~i~~~~~~~~ 186 (217)
T COG0269 123 AKWLKEL-GVDQVILHRGRDA-----QAAGKSWGEDDLEKIKKLSD---------LGAKVAVAGGI-TPEDIPLFKGIGA 186 (217)
T ss_pred HHHHHHh-CCCEEEEEecccH-----hhcCCCccHHHHHHHHHhhc---------cCceEEEecCC-CHHHHHHHhcCCC
Confidence 77777 7 89888772 3455 0011122 123444444432 24566678999 9999999999999
Q ss_pred CEEEEcccccCCCChHHHHHhhhc
Q 015424 379 KAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 379 daVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
+-|+||.+|+++.||.+..+++..
T Consensus 187 ~ivIvGraIt~a~dp~~~a~~~~~ 210 (217)
T COG0269 187 DIVIVGRAITGAKDPAEAARKFKE 210 (217)
T ss_pred CEEEECchhcCCCCHHHHHHHHHH
Confidence 999999999999999999888754
No 95
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=98.62 E-value=1.4e-06 Score=82.82 Aligned_cols=176 Identities=15% Similarity=0.180 Sum_probs=130.9
Q ss_pred eEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHH
Q 015424 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYA 257 (407)
Q Consensus 178 ~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eA 257 (407)
.||+=+.-.+|. +..++++++.++|..+|=|--.. .+.++-++.+++..-++ ++-=.-|+++.|+..|
T Consensus 9 ~liaVlr~~~~e--------~a~~~~~al~~~Gi~~iEit~~t---~~a~~~i~~l~~~~~~~-~vGAGTVl~~~~a~~a 76 (204)
T TIGR01182 9 KIVPVIRIDDVD--------DALPLAKALIEGGLRVLEVTLRT---PVALDAIRLLRKEVPDA-LIGAGTVLNPEQLRQA 76 (204)
T ss_pred CEEEEEecCCHH--------HHHHHHHHHHHcCCCEEEEeCCC---ccHHHHHHHHHHHCCCC-EEEEEeCCCHHHHHHH
Confidence 355555444433 67789999999999988875322 35677788887642222 3344568999999999
Q ss_pred HHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCch
Q 015424 258 RTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNS 337 (407)
Q Consensus 258 r~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~ 337 (407)
..+||+-++ +-.+++ ++++.|+++|+..+--+.|..|+..|+++ |+++|=+-.-+. +. -++
T Consensus 77 ~~aGA~Fiv--sP~~~~----~v~~~~~~~~i~~iPG~~TptEi~~A~~~-Ga~~vKlFPA~~-----------~G-G~~ 137 (204)
T TIGR01182 77 VDAGAQFIV--SPGLTP----ELAKHAQDHGIPIIPGVATPSEIMLALEL-GITALKLFPAEV-----------SG-GVK 137 (204)
T ss_pred HHcCCCEEE--CCCCCH----HHHHHHHHcCCcEECCCCCHHHHHHHHHC-CCCEEEECCchh-----------cC-CHH
Confidence 999999983 333433 57899999999999999999999999998 999987754332 11 022
Q ss_pred hHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCC
Q 015424 338 NTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD 392 (407)
Q Consensus 338 ~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~d 392 (407)
-.+.|..- + +++.++.-||| +++++....++|+.+|-+|+.|++...
T Consensus 138 yikal~~p-----l--p~i~~~ptGGV-~~~N~~~~l~aGa~~vg~Gs~L~~~~~ 184 (204)
T TIGR01182 138 MLKALAGP-----F--PQVRFCPTGGI-NLANVRDYLAAPNVACGGGSWLVPKDL 184 (204)
T ss_pred HHHHHhcc-----C--CCCcEEecCCC-CHHHHHHHHhCCCEEEEEChhhcCchh
Confidence 23444332 2 46889999999 789999999999999999999997553
No 96
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.58 E-value=3.9e-06 Score=88.70 Aligned_cols=187 Identities=15% Similarity=0.138 Sum_probs=119.9
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEEecCCcCCC--CHHHHHHHHhcCCCC------cEEeccccC---CHHH-HHHHHHcC
Q 015424 194 REDFDPVEIARSYEKGGAACLSILTDEKYFKG--SFENLEAVRSAGVKC------PLLCKEFIV---DAWQ-IYYARTKG 261 (407)
Q Consensus 194 ~~~~dp~~iA~ay~~~GA~aISVLTd~~~F~G--s~edL~~Vr~a~v~l------PVL~KDFIi---d~~Q-I~eAr~~G 261 (407)
.++....+..+.+.+.+...+-|+++.+.+.| +..||...... ... -++..+.+- +.++ +....++|
T Consensus 162 ~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~-p~a~~d~~g~l~V~aai~~~~~~~e~a~~L~~ag 240 (486)
T PRK05567 162 PEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEF-PNACKDEQGRLRVGAAVGVGADNEERAEALVEAG 240 (486)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhC-CCcccccCCCEEEEeecccCcchHHHHHHHHHhC
Confidence 44557778889999999999999988877777 55555443321 110 123333332 2243 44457889
Q ss_pred CCEEEEeccCCCHHHHHHHHHHHHH-c-CCcE-EEEeCCHHHHHHHhcccCCcEEEeecccccccccccccc---cc-cc
Q 015424 262 ADAVLLIAAVLPDLDIRYMTKICKL-L-GLTA-LVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTE---TF-EV 334 (407)
Q Consensus 262 ADaVLLiaaiL~~~~L~~Li~~a~~-L-GL~a-LVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~---Tf-~v 334 (407)
+|.+.+..+--....+.++++..+. + ++.+ +-.|-|.+++..+.++ |+++|.+- + +++..-++. .+ .+
T Consensus 241 vdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~a-Gad~i~vg---~-g~gs~~~~r~~~~~g~p 315 (486)
T PRK05567 241 VDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEA-GADAVKVG---I-GPGSICTTRIVAGVGVP 315 (486)
T ss_pred CCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHc-CCCEEEEC---C-CCCccccceeecCCCcC
Confidence 9988777652222334444555444 4 6664 4788999999999998 99999762 1 111101111 11 12
Q ss_pred CchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015424 335 DNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 391 (407)
Q Consensus 335 Dl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 391 (407)
++....++.+.. ...++++|++|||+++.|+.++..+|||+|.||++|..+.
T Consensus 316 ~~~~~~~~~~~~-----~~~~~~viadGGi~~~~di~kAla~GA~~v~~G~~~a~~~ 367 (486)
T PRK05567 316 QITAIADAAEAA-----KKYGIPVIADGGIRYSGDIAKALAAGASAVMLGSMLAGTE 367 (486)
T ss_pred HHHHHHHHHHHh-----ccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEECccccccc
Confidence 333333443321 1246899999999999999999999999999999999875
No 97
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=98.57 E-value=1.1e-05 Score=77.55 Aligned_cols=200 Identities=22% Similarity=0.277 Sum_probs=141.0
Q ss_pred cCCCcCCCCCCC-CHHHHHHHHHHcCCcEEEEEecCCcCCC----CHHHHHHHHhcCCCCcEEeccccCCHH-HHHHHHH
Q 015424 186 ASPSRGILREDF-DPVEIARSYEKGGAACLSILTDEKYFKG----SFENLEAVRSAGVKCPLLCKEFIVDAW-QIYYART 259 (407)
Q Consensus 186 aSPSkG~i~~~~-dp~~iA~ay~~~GA~aISVLTd~~~F~G----s~edL~~Vr~a~v~lPVL~KDFIid~~-QI~eAr~ 259 (407)
-+|| .+..++ ...+..+.++++||..||+-.-.+.|-= ++..++.+|+. ++.|+=+-=-+.+|. .+.....
T Consensus 6 iapS--ILsaD~~~l~~el~~~~~agad~iH~DVMDghFVPNiTfGp~~v~~l~~~-t~~p~DvHLMV~~p~~~i~~fa~ 82 (220)
T COG0036 6 IAPS--ILSADFARLGEELKALEAAGADLIHIDVMDGHFVPNITFGPPVVKALRKI-TDLPLDVHLMVENPDRYIEAFAK 82 (220)
T ss_pred eeee--hhhCCHhHHHHHHHHHHHcCCCEEEEeccCCCcCCCcccCHHHHHHHhhc-CCCceEEEEecCCHHHHHHHHHH
Confidence 3566 344443 5667788899999999999876655544 46889999985 788886655666665 4555688
Q ss_pred cCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeC--C-HHHHHHHhcccCCcEEEeeccccccccccccccccccC-
Q 015424 260 KGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH--D-EREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVD- 335 (407)
Q Consensus 260 ~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVh--t-~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vD- 335 (407)
+|||.|.+-+. ....+.+++++.+++|+.+=+=.+ | .+-++..++ .+|+|-+=.-|- |+....|-.+
T Consensus 83 agad~It~H~E--~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~--~vD~VllMsVnP-----GfgGQ~Fi~~~ 153 (220)
T COG0036 83 AGADIITFHAE--ATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLD--DVDLVLLMSVNP-----GFGGQKFIPEV 153 (220)
T ss_pred hCCCEEEEEec--cCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHh--hCCEEEEEeECC-----CCcccccCHHH
Confidence 99999999888 344788999999999999854443 4 344455554 355544432222 3333555433
Q ss_pred chhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 336 NSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 336 l~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
++...++.+.+.. . .++.+-.-||| +.+.+..+.++|||-++.|++|++++|..+.++++.+
T Consensus 154 l~Ki~~lr~~~~~---~-~~~~IeVDGGI-~~~t~~~~~~AGad~~VaGSalF~~~d~~~~i~~~~~ 215 (220)
T COG0036 154 LEKIRELRAMIDE---R-LDILIEVDGGI-NLETIKQLAAAGADVFVAGSALFGADDYKATIRELRG 215 (220)
T ss_pred HHHHHHHHHHhcc---c-CCeEEEEeCCc-CHHHHHHHHHcCCCEEEEEEEEeCCccHHHHHHHHHH
Confidence 3344444443211 0 15677789999 8999999999999999999999999998888888765
No 98
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=98.57 E-value=2.3e-06 Score=86.14 Aligned_cols=130 Identities=16% Similarity=0.170 Sum_probs=91.1
Q ss_pred HHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcC--CcEEE-EeCCHHHHHHHhcccCCcEEEeeccccccccccccc
Q 015424 253 QIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLG--LTALV-EVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRT 329 (407)
Q Consensus 253 QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LG--L~aLV-EVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~ 329 (407)
++....++|+|.|.+..+--....+.++++..++.+ +.+++ .|-|.+++..+.++ |+++|-+.. +++..-++
T Consensus 98 ~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~a-GaD~I~vg~----g~G~~~~t 172 (325)
T cd00381 98 RAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDA-GADGVKVGI----GPGSICTT 172 (325)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhc-CCCEEEECC----CCCcCccc
Confidence 455567899999999876554456677788777755 66665 78899999999997 999987731 11111111
Q ss_pred c----ccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCC
Q 015424 330 E----TFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD 392 (407)
Q Consensus 330 ~----Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~d 392 (407)
. .-.+++.....+.+.. ...++++|+.|||.++.|+.++..+||++|.+|+.|.....
T Consensus 173 ~~~~g~g~p~~~~i~~v~~~~-----~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t~E 234 (325)
T cd00381 173 RIVTGVGVPQATAVADVAAAA-----RDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDE 234 (325)
T ss_pred ceeCCCCCCHHHHHHHHHHHH-----hhcCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhccccc
Confidence 1 0113333333433321 11368899999999999999999999999999999987653
No 99
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=98.56 E-value=1.2e-06 Score=88.00 Aligned_cols=162 Identities=22% Similarity=0.213 Sum_probs=100.8
Q ss_pred ceEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEEe-----cCCcCCCCH-----HHHHHHHhcCCCCcEEec-
Q 015424 177 PALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILT-----DEKYFKGSF-----ENLEAVRSAGVKCPLLCK- 245 (407)
Q Consensus 177 ~~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVLT-----d~~~F~Gs~-----edL~~Vr~a~v~lPVL~K- 245 (407)
..||+-+-..|| .+..++|+.+++.||++|=++. ++..++++. +.++.+|++ +++||+.|
T Consensus 100 ~pvi~si~g~~~--------~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~-~~iPv~vKl 170 (325)
T cd04739 100 IPVIASLNGVSA--------GGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSA-VTIPVAVKL 170 (325)
T ss_pred CeEEEEeCCCCH--------HHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhc-cCCCEEEEc
Confidence 358888854433 2456889999999999996653 455555554 556778876 89999998
Q ss_pred --cccCCHHHH-HHHHHcCCCEEEEeccCCCH-HHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccc
Q 015424 246 --EFIVDAWQI-YYARTKGADAVLLIAAVLPD-LDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLA 321 (407)
Q Consensus 246 --DFIid~~QI-~eAr~~GADaVLLiaaiL~~-~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~ 321 (407)
++ .+...+ ..+.++|||+|.++-+.... .+++. +.. .. + .| |
T Consensus 171 ~p~~-~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~---------~~~--------------~~-~---~g-----l- 216 (325)
T cd04739 171 SPFF-SALAHMAKQLDAAGADGLVLFNRFYQPDIDLET---------LEV--------------VP-N---LL-----L- 216 (325)
T ss_pred CCCc-cCHHHHHHHHHHcCCCeEEEEcCcCCCCccccc---------cce--------------ec-C---CC-----c-
Confidence 32 233334 34678899999998764311 00000 000 00 0 01 1
Q ss_pred cccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccC-CCChH
Q 015424 322 ISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK-QDDPG 394 (407)
Q Consensus 322 ~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk-~~dp~ 394 (407)
+|.+. . ..-++...++.+. .++++|+-|||.|.+|+.+...+||++|-||++++. +++..
T Consensus 217 -SG~~~--~--~~al~~v~~v~~~--------~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~gp~~~ 277 (325)
T cd04739 217 -SSPAE--I--RLPLRWIAILSGR--------VKASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRHGPDYI 277 (325)
T ss_pred -CCccc--h--hHHHHHHHHHHcc--------cCCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhcCchHH
Confidence 01100 1 1112222333222 358999999999999999999999999999999998 46543
No 100
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=98.55 E-value=1.1e-05 Score=78.05 Aligned_cols=196 Identities=12% Similarity=0.081 Sum_probs=131.9
Q ss_pred CCcCCCCCC-CCHHHHHHHHHHcCCcEEEEEecCCcCCC----CHHHHHHHHhcCCCCcEEeccccCCHHH-HHHHHHcC
Q 015424 188 PSRGILRED-FDPVEIARSYEKGGAACLSILTDEKYFKG----SFENLEAVRSAGVKCPLLCKEFIVDAWQ-IYYARTKG 261 (407)
Q Consensus 188 PSkG~i~~~-~dp~~iA~ay~~~GA~aISVLTd~~~F~G----s~edL~~Vr~a~v~lPVL~KDFIid~~Q-I~eAr~~G 261 (407)
|| .+..+ .+..+..+.++++|++.+|+=.-++.|-- ++..++.+|+ ++|+=+-=-+.+|.+ |.....+|
T Consensus 17 pS--il~ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~---~~~~DvHLMv~~P~~~i~~~~~aG 91 (228)
T PRK08091 17 VG--ILASNWLKFNETLTTLSENQLRLLHFDIADGQFSPFFTVGAIAIKQFPT---HCFKDVHLMVRDQFEVAKACVAAG 91 (228)
T ss_pred ee--hhhcCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHhCC---CCCEEEEeccCCHHHHHHHHHHhC
Confidence 55 34443 35566778889999999999877766633 5677888863 567433334556765 55567889
Q ss_pred CCEEEEeccCCCHHHHHHHHHHHHHcCC--cEEEEe---CCHHHHHHHhcccCCcEEEeeccccccccccccccccccC-
Q 015424 262 ADAVLLIAAVLPDLDIRYMTKICKLLGL--TALVEV---HDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVD- 335 (407)
Q Consensus 262 ADaVLLiaaiL~~~~L~~Li~~a~~LGL--~aLVEV---ht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vD- 335 (407)
||.|.+-+.... ++.++++.++++|+ .+=+=+ ...+.++..+.. .|.|-|=.-|- |+....|..+
T Consensus 92 ad~It~H~Ea~~--~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~--vD~VLiMtV~P-----GfgGQ~f~~~~ 162 (228)
T PRK08091 92 ADIVTLQVEQTH--DLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQ--IDLIQILTLDP-----RTGTKAPSDLI 162 (228)
T ss_pred CCEEEEcccCcc--cHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhh--cCEEEEEEECC-----CCCCccccHHH
Confidence 999999887643 57788999999999 553322 356666666653 45444433222 3333555433
Q ss_pred chhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhh
Q 015424 336 NSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 401 (407)
Q Consensus 336 l~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~ 401 (407)
++...+|.+..... ..++.+-.-||| +.+.+.++.++|||.+++|++|++.+|+.+.+++|-
T Consensus 163 l~KI~~lr~~~~~~---~~~~~IeVDGGI-~~~ti~~l~~aGaD~~V~GSalF~~~d~~~~i~~l~ 224 (228)
T PRK08091 163 LDRVIQVENRLGNR---RVEKLISIDGSM-TLELASYLKQHQIDWVVSGSALFSQGELKTTLKEWK 224 (228)
T ss_pred HHHHHHHHHHHHhc---CCCceEEEECCC-CHHHHHHHHHCCCCEEEEChhhhCCCCHHHHHHHHH
Confidence 33444444432111 124667889999 799999999999999999999999999988888764
No 101
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.53 E-value=1.5e-06 Score=87.85 Aligned_cols=126 Identities=12% Similarity=0.053 Sum_probs=89.8
Q ss_pred HHHHHHHcCC--CEEEEeccCCCHHHHHHHHHHHHH-c-CCcEEE-EeCCHHHHHHHhcccCCcEEEeecccccccccc-
Q 015424 253 QIYYARTKGA--DAVLLIAAVLPDLDIRYMTKICKL-L-GLTALV-EVHDEREMDRVLGIEGIELIGINNRNLAISIFS- 326 (407)
Q Consensus 253 QI~eAr~~GA--DaVLLiaaiL~~~~L~~Li~~a~~-L-GL~aLV-EVht~eElerAl~l~Ga~iIGINnRdL~~~~~~- 326 (407)
++.+-.++|+ |+|.++++-=....+.++++..++ + +..+++ +|.|.+++..+.++ |+++|-+-+.. |..
T Consensus 101 ~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~a-Gad~i~vg~~~----G~~~ 175 (326)
T PRK05458 101 FVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENA-GADATKVGIGP----GKVC 175 (326)
T ss_pred HHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHc-CcCEEEECCCC----Cccc
Confidence 4555677755 999999887555667777777775 3 588899 89999999999998 99986543110 000
Q ss_pred ccc---cccccCch--hHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015424 327 YRT---ETFEVDNS--NTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 391 (407)
Q Consensus 327 ~t~---~Tf~vDl~--~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 391 (407)
.+. ..-..|+. ...++.+. ..+++|++|||.++.|+.++..+||++|.+|..|....
T Consensus 176 ~t~~~~g~~~~~w~l~ai~~~~~~--------~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~~ 237 (326)
T PRK05458 176 ITKIKTGFGTGGWQLAALRWCAKA--------ARKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHE 237 (326)
T ss_pred ccccccCCCCCccHHHHHHHHHHH--------cCCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcCCc
Confidence 000 11123322 34444432 24789999999999999999999999999999998543
No 102
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=98.53 E-value=1.9e-06 Score=86.61 Aligned_cols=160 Identities=21% Similarity=0.286 Sum_probs=99.8
Q ss_pred ceEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEE-----ecCCcCCCCH-----HHHHHHHhcCCCCcEEecc
Q 015424 177 PALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSIL-----TDEKYFKGSF-----ENLEAVRSAGVKCPLLCKE 246 (407)
Q Consensus 177 ~~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVL-----Td~~~F~Gs~-----edL~~Vr~a~v~lPVL~KD 246 (407)
..||+-+--.++ .+..++|+.+++.||++|.++ .++.+.++.. +.++.||+. +++||+.|-
T Consensus 102 ~pvi~sI~g~~~--------~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~-~~iPV~vKl 172 (334)
T PRK07565 102 IPVIASLNGSSA--------GGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSA-VSIPVAVKL 172 (334)
T ss_pred CcEEEEeccCCH--------HHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhc-cCCcEEEEe
Confidence 468998855443 256788999999999999984 3333333333 456778876 899999982
Q ss_pred --ccCCHHHHHH-HHHcCCCEEEEeccCCCH-HHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhc--ccCCcEEEeecccc
Q 015424 247 --FIVDAWQIYY-ARTKGADAVLLIAAVLPD-LDIRYMTKICKLLGLTALVEVHDEREMDRVLG--IEGIELIGINNRNL 320 (407)
Q Consensus 247 --FIid~~QI~e-Ar~~GADaVLLiaaiL~~-~~L~~Li~~a~~LGL~aLVEVht~eElerAl~--l~Ga~iIGINnRdL 320 (407)
++.+...+.. +..+|||+|.++-+.... .+++. ...... +.|+.+
T Consensus 173 ~p~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~---------------------~~~~~~~glsg~~~-------- 223 (334)
T PRK07565 173 SPYFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLET---------------------LEVVPGLVLSTPAE-------- 223 (334)
T ss_pred CCCchhHHHHHHHHHHcCCCeEEEECCcCCCCcChhh---------------------cccccCCCCCCchh--------
Confidence 2224445544 567899999887664321 01100 000000 011111
Q ss_pred ccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCC-CCh
Q 015424 321 AISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ-DDP 393 (407)
Q Consensus 321 ~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~-~dp 393 (407)
...-+....++.+. .++++|+.|||.|.+|+.++..+||++|-||++++.. ++.
T Consensus 224 -----------~~~al~~v~~~~~~--------~~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~g~~~ 278 (334)
T PRK07565 224 -----------LRLPLRWIAILSGR--------VGADLAATTGVHDAEDVIKMLLAGADVVMIASALLRHGPDY 278 (334)
T ss_pred -----------hhHHHHHHHHHHhh--------cCCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhhhCcHH
Confidence 11111222233222 2578999999999999999999999999999999983 543
No 103
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.52 E-value=8.1e-06 Score=83.82 Aligned_cols=213 Identities=14% Similarity=0.126 Sum_probs=122.5
Q ss_pred CccHHHHHHhhhhcCCCceEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCC-cEE---EEEecCCcCCCC--HHHHHHH
Q 015424 160 ARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGA-ACL---SILTDEKYFKGS--FENLEAV 233 (407)
Q Consensus 160 ~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA-~aI---SVLTd~~~F~Gs--~edL~~V 233 (407)
...|..++.+. |.+++|. +.|......++..+......... .+. .=+++.. |+=. .+-++.+
T Consensus 60 ~~~la~avs~~----GglGvl~-------~~gl~~~~~~~e~l~~qi~~~~~~~~~~~~~~~~~~P-~~p~l~~~iv~~~ 127 (368)
T PRK08649 60 SPETAIELGKL----GGLGVLN-------LEGLWTRYEDPEPILDEIASLGKDEATRLMQELYAEP-IKPELITERIAEI 127 (368)
T ss_pred CHHHHHHHHhC----CCceEEe-------eccccccCCCHHHHHHHHHhcCcHHHHHHHHHhhcCC-CCHHHHHHHHHHH
Confidence 34677777764 6778888 44544333455555544322110 000 0001111 2100 1234455
Q ss_pred HhcCCCCcEEeccccCCHHH-HHHHHHcCCCEEEEeccCCC-----HH-HHHHHHHHHHHcCCcEEE-EeCCHHHHHHHh
Q 015424 234 RSAGVKCPLLCKEFIVDAWQ-IYYARTKGADAVLLIAAVLP-----DL-DIRYMTKICKLLGLTALV-EVHDEREMDRVL 305 (407)
Q Consensus 234 r~a~v~lPVL~KDFIid~~Q-I~eAr~~GADaVLLiaaiL~-----~~-~L~~Li~~a~~LGL~aLV-EVht~eElerAl 305 (407)
+++ .++|-.+=--.+..+ +..+.++|+|.|.+-.+..+ .. +...+.+..++.++.+++ .|.|.+++..++
T Consensus 128 ~~~--~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~ 205 (368)
T PRK08649 128 RDA--GVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIVGGCVTYTTALHLM 205 (368)
T ss_pred HhC--eEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHH
Confidence 553 344421100012233 34467899999999654321 11 355677888889999998 999999999999
Q ss_pred cccCCcEEEeeccccccccccccc-cccccCchhHHHHhhccc--ccc---cccCCceEEEeeCCCCHHHHHHHHHcCCC
Q 015424 306 GIEGIELIGINNRNLAISIFSYRT-ETFEVDNSNTKKLLEGER--GEI---IRQKNIIVVGESGLFTPDDIAYVQEAGVK 379 (407)
Q Consensus 306 ~l~Ga~iIGINnRdL~~~~~~~t~-~Tf~vDl~~t~~L~~~~~--~~~---i~~~~v~vVAESGI~t~eD~~~l~~~Gad 379 (407)
++ |+|.|-+ .+ +++.+.++ ....+.+.+...+.+... .+. ....++++|+.|||.+..|+.+...+|||
T Consensus 206 ~a-GAD~V~V-G~---G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd 280 (368)
T PRK08649 206 RT-GAAGVLV-GI---GPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGAD 280 (368)
T ss_pred Hc-CCCEEEE-CC---CCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCC
Confidence 96 9998866 22 23322222 223334443323322100 000 00125899999999999999999999999
Q ss_pred EEEEcccccCCC
Q 015424 380 AVLVGESIVKQD 391 (407)
Q Consensus 380 aVLVGeaLmk~~ 391 (407)
+|.+|+.|....
T Consensus 281 ~Vm~Gs~fa~t~ 292 (368)
T PRK08649 281 AVMLGSPLARAA 292 (368)
T ss_pred eecccchhcccc
Confidence 999999998744
No 104
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=98.50 E-value=3.5e-06 Score=79.61 Aligned_cols=175 Identities=22% Similarity=0.274 Sum_probs=123.5
Q ss_pred eEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHH
Q 015424 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYA 257 (407)
Q Consensus 178 ~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eA 257 (407)
.||+=+.-.++. +..++++++.++|..+|-|--.. .+.++-++.+++..-++ ++-=.-+++..|+..|
T Consensus 9 ~iiaVir~~~~~--------~a~~~~~al~~gGi~~iEiT~~t---~~a~~~I~~l~~~~p~~-~vGAGTV~~~e~a~~a 76 (196)
T PF01081_consen 9 KIIAVIRGDDPE--------DAVPIAEALIEGGIRAIEITLRT---PNALEAIEALRKEFPDL-LVGAGTVLTAEQAEAA 76 (196)
T ss_dssp SEEEEETTSSGG--------GHHHHHHHHHHTT--EEEEETTS---TTHHHHHHHHHHHHTTS-EEEEES--SHHHHHHH
T ss_pred CEEEEEEcCCHH--------HHHHHHHHHHHCCCCEEEEecCC---ccHHHHHHHHHHHCCCC-eeEEEeccCHHHHHHH
Confidence 366666555443 78899999999999988875332 24577777777642232 4445568999999999
Q ss_pred HHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCch
Q 015424 258 RTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNS 337 (407)
Q Consensus 258 r~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~ 337 (407)
..+||+-++-= .++ .+++++|+++|+..+=-|-|..|+..|.++ |++++=+-.-+. +. -++
T Consensus 77 ~~aGA~FivSP--~~~----~~v~~~~~~~~i~~iPG~~TptEi~~A~~~-G~~~vK~FPA~~-----------~G-G~~ 137 (196)
T PF01081_consen 77 IAAGAQFIVSP--GFD----PEVIEYAREYGIPYIPGVMTPTEIMQALEA-GADIVKLFPAGA-----------LG-GPS 137 (196)
T ss_dssp HHHT-SEEEES--S------HHHHHHHHHHTSEEEEEESSHHHHHHHHHT-T-SEEEETTTTT-----------TT-HHH
T ss_pred HHcCCCEEECC--CCC----HHHHHHHHHcCCcccCCcCCHHHHHHHHHC-CCCEEEEecchh-----------cC-cHH
Confidence 99999997653 343 447899999999999999999999999998 999988854332 11 022
Q ss_pred hHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015424 338 NTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 391 (407)
Q Consensus 338 ~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 391 (407)
-.+.|..- + +++.++.-||| +++++....++|+.++.+|+.|++.+
T Consensus 138 ~ik~l~~p-----~--p~~~~~ptGGV-~~~N~~~~l~ag~~~vg~Gs~L~~~~ 183 (196)
T PF01081_consen 138 YIKALRGP-----F--PDLPFMPTGGV-NPDNLAEYLKAGAVAVGGGSWLFPKD 183 (196)
T ss_dssp HHHHHHTT-----T--TT-EEEEBSS---TTTHHHHHTSTTBSEEEESGGGSHH
T ss_pred HHHHHhcc-----C--CCCeEEEcCCC-CHHHHHHHHhCCCEEEEECchhcCHH
Confidence 24444432 2 46899999999 67999999999999999999999865
No 105
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=98.50 E-value=2.1e-05 Score=76.03 Aligned_cols=201 Identities=14% Similarity=0.149 Sum_probs=130.3
Q ss_pred cCCCcCCCCCCC-CHHHHHHHHHHcCCcEEEEEecCCcCCC----CHHHHHHHHhcCCCCcEEeccccCCHHH-HHHHHH
Q 015424 186 ASPSRGILREDF-DPVEIARSYEKGGAACLSILTDEKYFKG----SFENLEAVRSAGVKCPLLCKEFIVDAWQ-IYYART 259 (407)
Q Consensus 186 aSPSkG~i~~~~-dp~~iA~ay~~~GA~aISVLTd~~~F~G----s~edL~~Vr~a~v~lPVL~KDFIid~~Q-I~eAr~ 259 (407)
-||| .+..++ +..+..+.++. |++.||+=--.+.|-- ++..++.+|+. +++|+=+-=-+.+|.+ |.....
T Consensus 5 I~pS--il~ad~~~l~~el~~l~~-g~d~lH~DiMDG~FVPN~tfg~~~i~~ir~~-t~~~~DvHLMv~~P~~~i~~~~~ 80 (229)
T PRK09722 5 ISPS--LMCMDLLKFKEQIEFLNS-KADYFHIDIMDGHFVPNLTLSPFFVSQVKKL-ASKPLDVHLMVTDPQDYIDQLAD 80 (229)
T ss_pred EEee--hhhcCHHHHHHHHHHHHh-CCCEEEEecccCccCCCcccCHHHHHHHHhc-CCCCeEEEEEecCHHHHHHHHHH
Confidence 3576 344332 34444566666 8999999766555533 67889999985 7888543333445665 556678
Q ss_pred cCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHHHHhcccCCcEEEeeccccccccccccccccccC-
Q 015424 260 KGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVD- 335 (407)
Q Consensus 260 ~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVh---t~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vD- 335 (407)
+|||.|.+-+..... .+.++++.++++|+.+=+=++ ..+.++..+.. +|.|-+=.-|- |+....|..+
T Consensus 81 aGad~it~H~Ea~~~-~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~--vD~VLvMsV~P-----Gf~GQ~fi~~~ 152 (229)
T PRK09722 81 AGADFITLHPETING-QAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHL--LDKITVMTVDP-----GFAGQPFIPEM 152 (229)
T ss_pred cCCCEEEECccCCcc-hHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHh--cCEEEEEEEcC-----CCcchhccHHH
Confidence 899999998876542 467788999999999855444 55566666653 45443322221 3333555432
Q ss_pred chhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEccc-ccC-CCChHHHHHhhhc
Q 015424 336 NSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGES-IVK-QDDPGKGITGLFG 402 (407)
Q Consensus 336 l~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGea-Lmk-~~dp~~~i~~L~~ 402 (407)
++...+|.+..... ..++.+-.-||| +.+.+..+.++|||.+++|++ |++ .+|+.+.++.|..
T Consensus 153 l~KI~~lr~~~~~~---~~~~~IeVDGGI-~~~~i~~~~~aGad~~V~Gss~iF~~~~d~~~~i~~l~~ 217 (229)
T PRK09722 153 LDKIAELKALRERN---GLEYLIEVDGSC-NQKTYEKLMEAGADVFIVGTSGLFNLDEDIDEAWDIMTA 217 (229)
T ss_pred HHHHHHHHHHHHhc---CCCeEEEEECCC-CHHHHHHHHHcCCCEEEEChHHHcCCCCCHHHHHHHHHH
Confidence 23333333321110 124678889999 688999999999999999965 998 5788888877753
No 106
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=98.49 E-value=1.3e-05 Score=79.38 Aligned_cols=148 Identities=15% Similarity=0.164 Sum_probs=109.3
Q ss_pred CC-CcEEe-ccccCCHHHHHHHHHcCCCEEEEeccCCCHHH----HHHHHHHHHHcCCcEE-----------------EE
Q 015424 238 VK-CPLLC-KEFIVDAWQIYYARTKGADAVLLIAAVLPDLD----IRYMTKICKLLGLTAL-----------------VE 294 (407)
Q Consensus 238 v~-lPVL~-KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~----L~~Li~~a~~LGL~aL-----------------VE 294 (407)
.+ +||.. -|-.-+...+.+|...|.+.|.+..+-++.++ .++++++|+.+|..+= .-
T Consensus 72 ~~~vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~ 151 (282)
T TIGR01859 72 MSIVPVALHLDHGSSYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAE 151 (282)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccc
Confidence 46 89864 37666778899999999999999999997653 4557777788776532 12
Q ss_pred eCCHHHHHHHhc-ccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEee--CCCCHHHHH
Q 015424 295 VHDEREMDRVLG-IEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGES--GLFTPDDIA 371 (407)
Q Consensus 295 Vht~eElerAl~-l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAES--GI~t~eD~~ 371 (407)
+||.+|+.++.+ . |+|+|++.- |+..+..++....|++...++.+. -++++|+-| || +.+++.
T Consensus 152 ~t~~eea~~f~~~t-gvD~Lavs~----Gt~hg~~~~~~~l~~e~L~~i~~~--------~~iPlv~hGgSGi-~~e~i~ 217 (282)
T TIGR01859 152 LADPDEAEQFVKET-GVDYLAAAI----GTSHGKYKGEPGLDFERLKEIKEL--------TNIPLVLHGASGI-PEEQIK 217 (282)
T ss_pred cCCHHHHHHHHHHH-CcCEEeecc----CccccccCCCCccCHHHHHHHHHH--------hCCCEEEECCCCC-CHHHHH
Confidence 779999999997 5 999999752 333433334466788887777664 246777777 99 889999
Q ss_pred HHHHcCCCEEEEcccccCCCChHHHHHhhh
Q 015424 372 YVQEAGVKAVLVGESIVKQDDPGKGITGLF 401 (407)
Q Consensus 372 ~l~~~GadaVLVGeaLmk~~dp~~~i~~L~ 401 (407)
++.++|+++|=|++.|... ..+.+++.+
T Consensus 218 ~~i~~Gi~kiNv~T~l~~a--~~~~~~~~~ 245 (282)
T TIGR01859 218 KAIKLGIAKINIDTDCRIA--FTAAIRKVL 245 (282)
T ss_pred HHHHcCCCEEEECcHHHHH--HHHHHHHHH
Confidence 9999999999999998643 334444443
No 107
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=98.48 E-value=7.5e-06 Score=80.59 Aligned_cols=149 Identities=24% Similarity=0.390 Sum_probs=100.7
Q ss_pred CHHHHHHHHhcCCCCcEEeccccCCHH------HHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeC---
Q 015424 226 SFENLEAVRSAGVKCPLLCKEFIVDAW------QIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH--- 296 (407)
Q Consensus 226 s~edL~~Vr~a~v~lPVL~KDFIid~~------QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVh--- 296 (407)
.++.++.+|+.++++|+..--+-.+-+ -+..++++|+|++++ .-|+.++-.++.+.|+++||+.+.=|.
T Consensus 81 ~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGliv--pDLP~ee~~~~~~~~~~~gi~~I~lvaPtt 158 (265)
T COG0159 81 TLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLV--PDLPPEESDELLKAAEKHGIDPIFLVAPTT 158 (265)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEe--CCCChHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 467777888655889988666544333 244688999999876 457777777899999999999855544
Q ss_pred CHHHHHHHhccc-CCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHH
Q 015424 297 DEREMDRVLGIE-GIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQE 375 (407)
Q Consensus 297 t~eElerAl~l~-Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~ 375 (407)
+.+-+++..+.. |. |-.-.| .|.|...... .+...++++.++. + .+++++..=||+++++++++.+
T Consensus 159 ~~~rl~~i~~~a~GF--iY~vs~------~GvTG~~~~~-~~~~~~~v~~vr~--~--~~~Pv~vGFGIs~~e~~~~v~~ 225 (265)
T COG0159 159 PDERLKKIAEAASGF--IYYVSR------MGVTGARNPV-SADVKELVKRVRK--Y--TDVPVLVGFGISSPEQAAQVAE 225 (265)
T ss_pred CHHHHHHHHHhCCCc--EEEEec------ccccCCCccc-chhHHHHHHHHHH--h--cCCCeEEecCcCCHHHHHHHHH
Confidence 556667766652 33 222112 2222222221 1123445444332 2 4678999999999999999999
Q ss_pred cCCCEEEEcccccCC
Q 015424 376 AGVKAVLVGESIVKQ 390 (407)
Q Consensus 376 ~GadaVLVGeaLmk~ 390 (407)
+ ||||+||++|++.
T Consensus 226 ~-ADGVIVGSAiV~~ 239 (265)
T COG0159 226 A-ADGVIVGSAIVKI 239 (265)
T ss_pred h-CCeEEEcHHHHHH
Confidence 9 9999999999864
No 108
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=98.47 E-value=1.9e-06 Score=88.40 Aligned_cols=136 Identities=13% Similarity=0.201 Sum_probs=90.4
Q ss_pred HHHH-HHHHHcCCCEEEEeccCCC------HHHHHHHHHHHHHcCCcEEE-EeCCHHHHHHHhcccCCcEEEeecccccc
Q 015424 251 AWQI-YYARTKGADAVLLIAAVLP------DLDIRYMTKICKLLGLTALV-EVHDEREMDRVLGIEGIELIGINNRNLAI 322 (407)
Q Consensus 251 ~~QI-~eAr~~GADaVLLiaaiL~------~~~L~~Li~~a~~LGL~aLV-EVht~eElerAl~l~Ga~iIGINnRdL~~ 322 (407)
..++ ..+.++|||.|.+..+..+ ..+...+.+.++++++.+++ .|.|.+++.++++. |++.|-+-.-
T Consensus 144 ~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~G~V~t~e~A~~~~~a-GaDgV~~G~g---- 218 (369)
T TIGR01304 144 AREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIAGGVNDYTTALHLMRT-GAAGVIVGPG---- 218 (369)
T ss_pred HHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHc-CCCEEEECCC----
Confidence 3344 3457899999999755421 22455677778889999998 89999999999996 9998764211
Q ss_pred ccccccccccccCchhHHHHhhcc--ccc---ccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCC
Q 015424 323 SIFSYRTETFEVDNSNTKKLLEGE--RGE---IIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD 392 (407)
Q Consensus 323 ~~~~~t~~Tf~vDl~~t~~L~~~~--~~~---~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~d 392 (407)
+..++.....+...+...+.+.. +.+ ......+++|+.|||.+..|+.+...+|||+|.+|+.|..+..
T Consensus 219 -g~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~E 292 (369)
T TIGR01304 219 -GANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAE 292 (369)
T ss_pred -CCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhc
Confidence 11222222222333222221110 000 0001248999999999999999999999999999999987543
No 109
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.46 E-value=5.4e-06 Score=88.02 Aligned_cols=185 Identities=14% Similarity=0.133 Sum_probs=118.2
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEEecCCcCCC--CHHHHHHHHhcCCCCcEEecc---------c-cCCHH---HHHHHH
Q 015424 194 REDFDPVEIARSYEKGGAACLSILTDEKYFKG--SFENLEAVRSAGVKCPLLCKE---------F-IVDAW---QIYYAR 258 (407)
Q Consensus 194 ~~~~dp~~iA~ay~~~GA~aISVLTd~~~F~G--s~edL~~Vr~a~v~lPVL~KD---------F-Iid~~---QI~eAr 258 (407)
.++.+..+..+.+.+.+...+-|+.+.+-+-| +..||..... .|--+|| . .+.+. .+....
T Consensus 175 ~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~----~p~a~~D~~GrL~Vgaavg~~~~~~~~~~~l~ 250 (495)
T PTZ00314 175 NTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRG----YPNASLDSNGQLLVGAAISTRPEDIERAAALI 250 (495)
T ss_pred CCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhccc----CchhhhccCCCEEEEEEECCCHHHHHHHHHHH
Confidence 45567778888888889999999877766666 4455554432 3433443 1 12333 334457
Q ss_pred HcCCCEEEEeccCCCHHHHHHHHHHHHHc--CCcEEE-EeCCHHHHHHHhcccCCcEEEeeccccccccc-cccccccc-
Q 015424 259 TKGADAVLLIAAVLPDLDIRYMTKICKLL--GLTALV-EVHDEREMDRVLGIEGIELIGINNRNLAISIF-SYRTETFE- 333 (407)
Q Consensus 259 ~~GADaVLLiaaiL~~~~L~~Li~~a~~L--GL~aLV-EVht~eElerAl~l~Ga~iIGINnRdL~~~~~-~~t~~Tf~- 333 (407)
++|+|.|.+..+-=......++++..++. ++.+++ .|-|.+++..+.++ ||+.|-+.. ++|. .+|.....
T Consensus 251 ~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~a-Gad~I~vg~----g~Gs~~~t~~~~~~ 325 (495)
T PTZ00314 251 EAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDA-GADGLRIGM----GSGSICITQEVCAV 325 (495)
T ss_pred HCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHc-CCCEEEECC----cCCcccccchhccC
Confidence 88999999987522112223345555543 677777 89999999999997 999885420 1110 11111111
Q ss_pred --cCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCC
Q 015424 334 --VDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD 392 (407)
Q Consensus 334 --vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~d 392 (407)
+.+....++.+.. ...++++|+.|||.++.|+.++..+||++|.+|+.|..+..
T Consensus 326 g~p~~~ai~~~~~~~-----~~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~~e 381 (495)
T PTZ00314 326 GRPQASAVYHVARYA-----RERGVPCIADGGIKNSGDICKALALGADCVMLGSLLAGTEE 381 (495)
T ss_pred CCChHHHHHHHHHHH-----hhcCCeEEecCCCCCHHHHHHHHHcCCCEEEECchhccccc
Confidence 2222222333221 12468999999999999999999999999999999988653
No 110
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.46 E-value=1.3e-05 Score=76.63 Aligned_cols=176 Identities=14% Similarity=0.134 Sum_probs=130.1
Q ss_pred eEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHH
Q 015424 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYA 257 (407)
Q Consensus 178 ~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eA 257 (407)
.+|+=+.-.+|. +..+++++..++|..+|=|--. ..+.++-++.+|+...++ ++-=|-+++++|+..|
T Consensus 16 ~~iaV~r~~~~~--------~a~~i~~al~~~Gi~~iEitl~---~~~~~~~I~~l~~~~p~~-~IGAGTVl~~~~a~~a 83 (212)
T PRK05718 16 PVVPVIVINKLE--------DAVPLAKALVAGGLPVLEVTLR---TPAALEAIRLIAKEVPEA-LIGAGTVLNPEQLAQA 83 (212)
T ss_pred CEEEEEEcCCHH--------HHHHHHHHHHHcCCCEEEEecC---CccHHHHHHHHHHHCCCC-EEEEeeccCHHHHHHH
Confidence 466666555443 6778999999999998887411 225677788887642232 4556778999999999
Q ss_pred HHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCch
Q 015424 258 RTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNS 337 (407)
Q Consensus 258 r~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~ 337 (407)
..+|||-++-- .+++ ++++.|+++|+..+=.|.|..|+..|.++ |+++|-+-.-+. + -.++
T Consensus 84 ~~aGA~FivsP--~~~~----~vi~~a~~~~i~~iPG~~TptEi~~a~~~-Ga~~vKlFPa~~-----------~-gg~~ 144 (212)
T PRK05718 84 IEAGAQFIVSP--GLTP----PLLKAAQEGPIPLIPGVSTPSELMLGMEL-GLRTFKFFPAEA-----------S-GGVK 144 (212)
T ss_pred HHcCCCEEECC--CCCH----HHHHHHHHcCCCEeCCCCCHHHHHHHHHC-CCCEEEEccchh-----------c-cCHH
Confidence 99999997654 3443 47788999999999999999999999998 999999843222 1 1334
Q ss_pred hHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCC
Q 015424 338 NTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD 392 (407)
Q Consensus 338 ~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~d 392 (407)
..+.|..- + +++.++.-||| +++++....++|+-.+..|+.|++...
T Consensus 145 ~lk~l~~p-----~--p~~~~~ptGGV-~~~ni~~~l~ag~v~~vggs~L~~~~~ 191 (212)
T PRK05718 145 MLKALAGP-----F--PDVRFCPTGGI-SPANYRDYLALPNVLCIGGSWMVPKDA 191 (212)
T ss_pred HHHHHhcc-----C--CCCeEEEeCCC-CHHHHHHHHhCCCEEEEEChHhCCcch
Confidence 44455432 2 35889999999 789999999999777777888876443
No 111
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.37 E-value=2.3e-05 Score=77.04 Aligned_cols=163 Identities=17% Similarity=0.121 Sum_probs=98.2
Q ss_pred HHHHHHHhc--CCCCcEEeccccCCHHHH----HHHHHcCCCEEEEecc----------CC-CHHHHHHHHHHHHHc-CC
Q 015424 228 ENLEAVRSA--GVKCPLLCKEFIVDAWQI----YYARTKGADAVLLIAA----------VL-PDLDIRYMTKICKLL-GL 289 (407)
Q Consensus 228 edL~~Vr~a--~v~lPVL~KDFIid~~QI----~eAr~~GADaVLLiaa----------iL-~~~~L~~Li~~a~~L-GL 289 (407)
..++.+++. ..+.|++..=+..++.+. ..+..+|+|+|=|... .+ +.+.+.++++.+++. ++
T Consensus 76 ~~~~~~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~ 155 (296)
T cd04740 76 AFLEELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDV 155 (296)
T ss_pred HHHHHHHHHhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCC
Confidence 445555421 146787743222333322 2345679999988543 22 345567788887775 88
Q ss_pred cEEEEeC----CHHH-HHHHhcccCCcEEEeecccccc--cc-----------ccccccc-cccCchhHHHHhhcccccc
Q 015424 290 TALVEVH----DERE-MDRVLGIEGIELIGINNRNLAI--SI-----------FSYRTET-FEVDNSNTKKLLEGERGEI 350 (407)
Q Consensus 290 ~aLVEVh----t~eE-lerAl~l~Ga~iIGINnRdL~~--~~-----------~~~t~~T-f~vDl~~t~~L~~~~~~~~ 350 (407)
.++|-+. +..+ ++.+.++ |++.|-+-|+-... +. .+++... ....+....++.+.
T Consensus 156 Pv~vKl~~~~~~~~~~a~~~~~~-G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~----- 229 (296)
T cd04740 156 PVIVKLTPNVTDIVEIARAAEEA-GADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKA----- 229 (296)
T ss_pred CEEEEeCCCchhHHHHHHHHHHc-CCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHh-----
Confidence 8887665 2334 3445565 99987765542200 00 0011000 01122333333322
Q ss_pred cccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHh
Q 015424 351 IRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITG 399 (407)
Q Consensus 351 i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~ 399 (407)
.++++|+.|||.+++|+.++..+|||+|-||++++..++....+++
T Consensus 230 ---~~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~ 275 (296)
T cd04740 230 ---VEIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIE 275 (296)
T ss_pred ---cCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHH
Confidence 2579999999999999999999999999999999997776655544
No 112
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=98.37 E-value=1.2e-05 Score=77.98 Aligned_cols=170 Identities=22% Similarity=0.308 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCCCH----HH----HHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEec
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKGSF----EN----LEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA 269 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~----ed----L~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLia 269 (407)
++.+..+...+.|.++|-| +||. ++ +..+|+ +++||+- |.=++.||- -+||++++.
T Consensus 20 ~~~~~~~~~~~~gtdai~v-------GGS~~vt~~~~~~~v~~ik~--~~lPvil--fp~~~~~i~----~~aDa~l~~- 83 (232)
T PRK04169 20 LPDEALEAICESGTDAIIV-------GGSDGVTEENVDELVKAIKE--YDLPVIL--FPGNIEGIS----PGADAYLFP- 83 (232)
T ss_pred CCHHHHHHHHhcCCCEEEE-------cCCCccchHHHHHHHHHHhc--CCCCEEE--eCCCccccC----cCCCEEEEE-
Confidence 3334446777889999988 4554 33 345554 6899986 555555552 469999885
Q ss_pred cCCCHHHHHHHH-------HHHHHcCCcEEEE-------------------e-CCHHHHHHHhccc----CCcEEEeecc
Q 015424 270 AVLPDLDIRYMT-------KICKLLGLTALVE-------------------V-HDEREMDRVLGIE----GIELIGINNR 318 (407)
Q Consensus 270 aiL~~~~L~~Li-------~~a~~LGL~aLVE-------------------V-ht~eElerAl~l~----Ga~iIGINnR 318 (407)
++|+..+-..++ ...+.+|++++-| + .|.+|+..+..+. |..++-+.
T Consensus 84 svlNs~~~~~iig~~~~~~~~~~~~~le~ip~gYiv~~~~~~va~~~~~~~~~~~~~~~~~~~~lA~~~~g~~~vYle-- 161 (232)
T PRK04169 84 SVLNSRNPYWIIGAHVEAAPIIKKGGLEVIPEGYIVLNPGSKVAVVGTAAPIPLDKPDIAAYAALAAEYLGMPIVYLE-- 161 (232)
T ss_pred EEecCCCcchHhhHHHHHHHHHhhcCcEECceEEEEECCCCeeeeeeccccCCCChHHHHHHHHHHHHHcCCCeEEEE--
Confidence 455322222221 1124457766211 1 2556665555441 22333221
Q ss_pred ccccccccccccccccCchhHHHHhhcccccccccCCc-eEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHH
Q 015424 319 NLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNI-IVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGI 397 (407)
Q Consensus 319 dL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v-~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i 397 (407)
. +++ ..-.+|.+...++.+. .+. +++..|||+++++++++..+|||+|+||+++.+. |.+.+
T Consensus 162 -~-gs~-----~g~~~~~e~I~~v~~~--------~~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~d--~~~~~ 224 (232)
T PRK04169 162 -Y-GGG-----AGDPVPPEMVKAVKKA--------LDITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEED--PKKTV 224 (232)
T ss_pred -C-CCC-----CCCCCCHHHHHHHHHh--------cCCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhhC--HHHHH
Confidence 1 100 1233566666666553 234 7889999999999999999999999999999965 44677
Q ss_pred Hhhhc
Q 015424 398 TGLFG 402 (407)
Q Consensus 398 ~~L~~ 402 (407)
+++..
T Consensus 225 ~~~~~ 229 (232)
T PRK04169 225 KAIKK 229 (232)
T ss_pred HHHHh
Confidence 66543
No 113
>PRK14057 epimerase; Provisional
Probab=98.36 E-value=5.6e-05 Score=74.16 Aligned_cols=197 Identities=15% Similarity=0.119 Sum_probs=130.2
Q ss_pred CCCcCCCCCCC-CHHHHHHHHHHcCCcEEEEEecCCcCCC----CHHHHHHHHhcCCCCcEEeccccCCHHH-HHHHHHc
Q 015424 187 SPSRGILREDF-DPVEIARSYEKGGAACLSILTDEKYFKG----SFENLEAVRSAGVKCPLLCKEFIVDAWQ-IYYARTK 260 (407)
Q Consensus 187 SPSkG~i~~~~-dp~~iA~ay~~~GA~aISVLTd~~~F~G----s~edL~~Vr~a~v~lPVL~KDFIid~~Q-I~eAr~~ 260 (407)
||| .+..++ +..+..+.++++|++.||+=.-++.|-- +++.++.+|+ ++|+=+-=-+.+|.+ |.+...+
T Consensus 23 spS--il~aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~---~~p~DvHLMV~~P~~~i~~~~~a 97 (254)
T PRK14057 23 SVG--ILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQLPQ---TFIKDVHLMVADQWTAAQACVKA 97 (254)
T ss_pred Eee--hhhcCHHHHHHHHHHHHHCCCCEEEEeccCCccCCccccCHHHHHHhcc---CCCeeEEeeeCCHHHHHHHHHHh
Confidence 365 344442 5566778889999999999876666633 5678888864 466332223345654 5566789
Q ss_pred CCCEEEEeccCCCHHHHHHHHHHHHHcCCc---------EEEEe---CCHHHHHHHhcccCCcEEEeecccccccccccc
Q 015424 261 GADAVLLIAAVLPDLDIRYMTKICKLLGLT---------ALVEV---HDEREMDRVLGIEGIELIGINNRNLAISIFSYR 328 (407)
Q Consensus 261 GADaVLLiaaiL~~~~L~~Li~~a~~LGL~---------aLVEV---ht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t 328 (407)
|||.|.+-+.... .+.+.++.++++|+. +=+=+ ...+.++..+.. .|.|-+=.-|- |+.
T Consensus 98 Gad~It~H~Ea~~--~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~--vD~VLvMtV~P-----Gfg 168 (254)
T PRK14057 98 GAHCITLQAEGDI--HLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSD--VEVIQLLAVNP-----GYG 168 (254)
T ss_pred CCCEEEEeecccc--CHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHh--CCEEEEEEECC-----CCC
Confidence 9999999887643 467888999999973 32222 356666766653 45444432222 333
Q ss_pred ccccccC-chhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhh
Q 015424 329 TETFEVD-NSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 401 (407)
Q Consensus 329 ~~Tf~vD-l~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~ 401 (407)
...|..+ ++...+|.+.+... ..++.+-.-||| +.+.+..+.++|||.+++|++|++.+|+.+.++.|.
T Consensus 169 GQ~Fi~~~l~KI~~lr~~~~~~---~~~~~IeVDGGI-~~~ti~~l~~aGad~~V~GSalF~~~d~~~~i~~l~ 238 (254)
T PRK14057 169 SKMRSSDLHERVAQLLCLLGDK---REGKIIVIDGSL-TQDQLPSLIAQGIDRVVSGSALFRDDRLVENTRSWR 238 (254)
T ss_pred chhccHHHHHHHHHHHHHHHhc---CCCceEEEECCC-CHHHHHHHHHCCCCEEEEChHhhCCCCHHHHHHHHH
Confidence 3555432 23333443332111 124678889999 888999999999999999999999999988888775
No 114
>PRK06852 aldolase; Validated
Probab=98.35 E-value=3.4e-05 Score=77.42 Aligned_cols=182 Identities=15% Similarity=0.129 Sum_probs=118.6
Q ss_pred CCCCCCCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEec----cccC-----CHH-----HHHHH
Q 015424 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCK----EFIV-----DAW-----QIYYA 257 (407)
Q Consensus 192 ~i~~~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~K----DFIi-----d~~-----QI~eA 257 (407)
.+....||..+.+...++|++|+-+- .--++.......++|++.| .-+. |++ .|.+|
T Consensus 54 ~~~gl~dp~~~i~~~~~~g~dav~~~---------~G~l~~~~~~~~~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVeeA 124 (304)
T PRK06852 54 IAKDDADPEHLFRIASKAKIGVFATQ---------LGLIARYGMDYPDVPYLVKLNSKTNLVKTSQRDPLSRQLLDVEQV 124 (304)
T ss_pred CCcccCCHHHHHHHHHhcCCCEEEeC---------HHHHHhhccccCCCcEEEEECCCCCcCCcccCCccccceecHHHH
Confidence 36677899999999999999998862 3344433322246787643 1122 232 48899
Q ss_pred HHcC------CCEEEEeccCCCH------HHHHHHHHHHHHcCCcEEEEeC-------CHHH-------HHHHhcccCCc
Q 015424 258 RTKG------ADAVLLIAAVLPD------LDIRYMTKICKLLGLTALVEVH-------DERE-------MDRVLGIEGIE 311 (407)
Q Consensus 258 r~~G------ADaVLLiaaiL~~------~~L~~Li~~a~~LGL~aLVEVh-------t~eE-------lerAl~l~Ga~ 311 (407)
..+| ||+|-.-.-+-++ .++.++.+.|+++||-+|+.+. +..+ +..+.++ |||
T Consensus 125 vrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaEL-GAD 203 (304)
T PRK06852 125 VEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACL-GAD 203 (304)
T ss_pred HhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHH-cCC
Confidence 9988 7788776555443 2455566778889999987443 2222 3445677 999
Q ss_pred EEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCC-HH----HHHHHHH-cCCCEEEEcc
Q 015424 312 LIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFT-PD----DIAYVQE-AGVKAVLVGE 385 (407)
Q Consensus 312 iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t-~e----D~~~l~~-~GadaVLVGe 385 (407)
||=++- |+...+-|.+.+.++... + ..++||..||=++ .+ .+....+ +|+.|+.+|.
T Consensus 204 IVKv~y----------~~~~~~g~~e~f~~vv~~------~-g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GR 266 (304)
T PRK06852 204 FVKVNY----------PKKEGANPAELFKEAVLA------A-GRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGR 266 (304)
T ss_pred EEEecC----------CCcCCCCCHHHHHHHHHh------C-CCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeech
Confidence 999952 212222355667776654 1 1467778888774 22 3344546 8999999999
Q ss_pred cccCCCCh--HHHHHhh
Q 015424 386 SIVKQDDP--GKGITGL 400 (407)
Q Consensus 386 aLmk~~dp--~~~i~~L 400 (407)
-+...++| .+.++.|
T Consensus 267 NIfQ~~~p~~~~~~~Ai 283 (304)
T PRK06852 267 NIHQKPLDEAVRMCNAI 283 (304)
T ss_pred hhhcCCCchHHHHHHHH
Confidence 99999998 6444433
No 115
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=98.35 E-value=4.2e-05 Score=76.36 Aligned_cols=187 Identities=16% Similarity=0.159 Sum_probs=127.0
Q ss_pred HHHHHHHHHHcCCcEEEEEecC--CcCCCCHHHHH----HHHhc-CCCCcEE-eccccCCHHHHHHHHHcCCCEEEEecc
Q 015424 199 PVEIARSYEKGGAACLSILTDE--KYFKGSFENLE----AVRSA-GVKCPLL-CKEFIVDAWQIYYARTKGADAVLLIAA 270 (407)
Q Consensus 199 p~~iA~ay~~~GA~aISVLTd~--~~F~Gs~edL~----~Vr~a-~v~lPVL-~KDFIid~~QI~eAr~~GADaVLLiaa 270 (407)
...+.++.++.++..|-=++.. +|++| ++.+. .+.+. .+++||- .-|-. +...+.+|...|.+.|.+..+
T Consensus 31 ~~avi~aAe~~~sPvIlq~s~~~~~~~~~-~~~~~~~~~~~a~~~~~~vPV~lHLDH~-~~~~i~~ai~~GftSVm~d~S 108 (293)
T PRK07315 31 TQAILRAAEAKKAPVLIQTSMGAAKYMGG-YKVCKNLIENLVESMGITVPVAIHLDHG-HYEDALECIEVGYTSIMFDGS 108 (293)
T ss_pred HHHHHHHHHHHCCCEEEEcCccHHhhcCc-HHHHHHHHHHHHHHcCCCCcEEEECCCC-CHHHHHHHHHcCCCEEEEcCC
Confidence 3445566666665555433332 33333 33322 22222 2367874 66777 777899999999999999999
Q ss_pred CCCHHHH----HHHHHHHHHcCCcE---------------EEEe-CCHHHHHHHhcccCCcEEEeecccccccc-ccccc
Q 015424 271 VLPDLDI----RYMTKICKLLGLTA---------------LVEV-HDEREMDRVLGIEGIELIGINNRNLAISI-FSYRT 329 (407)
Q Consensus 271 iL~~~~L----~~Li~~a~~LGL~a---------------LVEV-ht~eElerAl~l~Ga~iIGINnRdL~~~~-~~~t~ 329 (407)
-++.++. +++.++|+.+|..+ -..+ ||.+|+.++.+. |+|+|++. +|+. ..|++
T Consensus 109 ~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~~t-gvD~LAv~----iG~vHG~y~t 183 (293)
T PRK07315 109 HLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMVET-GIDFLAAG----IGNIHGPYPE 183 (293)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccCCCCHHHHHHHHHc-CCCEEeec----cccccccCCC
Confidence 9987543 44566666654433 1123 899999999975 99999995 1222 01332
Q ss_pred cccccCchhHHHHhhcccccccccCCceEEEeeC--CCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 330 ETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESG--LFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 330 ~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESG--I~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
.+-.+|++...++.+.+ .++++|+-|| | +.++++++.++|++.|=|++.|.. ++.+++++++.
T Consensus 184 ~~k~l~~e~L~~i~~~~-------~~iPlVlhGGSGi-~~e~~~~~i~~Gi~KiNv~T~i~~--~~~~~~~~~~~ 248 (293)
T PRK07315 184 NWEGLDLDHLEKLTEAV-------PGFPIVLHGGSGI-PDDQIQEAIKLGVAKVNVNTECQI--AFANATRKFAR 248 (293)
T ss_pred CCCcCCHHHHHHHHHhc-------cCCCEEEECCCCC-CHHHHHHHHHcCCCEEEEccHHHH--HHHHHHHHHHH
Confidence 34468888888887652 1356666666 9 889999999999999999999996 88888888764
No 116
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.34 E-value=4.5e-05 Score=72.42 Aligned_cols=163 Identities=13% Similarity=0.125 Sum_probs=122.3
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCCHHHH
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDI 277 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L 277 (407)
+..+++++..++|..+|=|--.. .+.++-++.+++. .+=-++-=.-++++.|+.+|..+||+-++- -.+++
T Consensus 17 ~a~~ia~al~~gGi~~iEit~~t---p~a~~~I~~l~~~-~~~~~vGAGTVl~~e~a~~ai~aGA~FivS--P~~~~--- 87 (201)
T PRK06015 17 HAVPLARALAAGGLPAIEITLRT---PAALDAIRAVAAE-VEEAIVGAGTILNAKQFEDAAKAGSRFIVS--PGTTQ--- 87 (201)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCC---ccHHHHHHHHHHH-CCCCEEeeEeCcCHHHHHHHHHcCCCEEEC--CCCCH---
Confidence 67789999999999988874322 2567778777764 221234455689999999999999998654 34443
Q ss_pred HHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCce
Q 015424 278 RYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNII 357 (407)
Q Consensus 278 ~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~ 357 (407)
++++.|++.|+..+=-+-|..|+..|.++ |+++|=+-.-+. +. -++-.+.|..- + +++.
T Consensus 88 -~vi~~a~~~~i~~iPG~~TptEi~~A~~~-Ga~~vK~FPa~~-----------~G-G~~yikal~~p-----l--p~~~ 146 (201)
T PRK06015 88 -ELLAAANDSDVPLLPGAATPSEVMALREE-GYTVLKFFPAEQ-----------AG-GAAFLKALSSP-----L--AGTF 146 (201)
T ss_pred -HHHHHHHHcCCCEeCCCCCHHHHHHHHHC-CCCEEEECCchh-----------hC-CHHHHHHHHhh-----C--CCCc
Confidence 47899999999999999999999999998 999987754322 10 12223344332 2 3688
Q ss_pred EEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015424 358 VVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 391 (407)
Q Consensus 358 vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 391 (407)
++.-||| +++++....++|+..++.|+.|++..
T Consensus 147 l~ptGGV-~~~n~~~~l~ag~~~~~ggs~l~~~~ 179 (201)
T PRK06015 147 FCPTGGI-SLKNARDYLSLPNVVCVGGSWVAPKE 179 (201)
T ss_pred EEecCCC-CHHHHHHHHhCCCeEEEEchhhCCch
Confidence 9999999 78999999999988888899998653
No 117
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=98.33 E-value=1.5e-05 Score=77.82 Aligned_cols=154 Identities=16% Similarity=0.094 Sum_probs=96.1
Q ss_pred CCCcEEeccccCCHHHH----HHHHHcCCCEEEEeccCC----------CHHHHHHHHHHHHHc-CCcEEEEeCC-----
Q 015424 238 VKCPLLCKEFIVDAWQI----YYARTKGADAVLLIAAVL----------PDLDIRYMTKICKLL-GLTALVEVHD----- 297 (407)
Q Consensus 238 v~lPVL~KDFIid~~QI----~eAr~~GADaVLLiaaiL----------~~~~L~~Li~~a~~L-GL~aLVEVht----- 297 (407)
.+.|++..=+..++.++ ..+..+|+|+|-|....- ..+.+.++++..++. ++.++|-+..
T Consensus 97 ~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~ 176 (289)
T cd02810 97 PGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLE 176 (289)
T ss_pred CCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHH
Confidence 36787754333344432 234567999999986531 334567777777653 6667766552
Q ss_pred --HHHHHHHhcccCCcEEEeecccccccc-------------ccccccc-cccCchhHHHHhhcccccccccCCceEEEe
Q 015424 298 --EREMDRVLGIEGIELIGINNRNLAISI-------------FSYRTET-FEVDNSNTKKLLEGERGEIIRQKNIIVVGE 361 (407)
Q Consensus 298 --~eElerAl~l~Ga~iIGINnRdL~~~~-------------~~~t~~T-f~vDl~~t~~L~~~~~~~~i~~~~v~vVAE 361 (407)
.+-++.+.++ |++.|-+.|+...... .+++... ....++...++.+. + +.++++|+.
T Consensus 177 ~~~~~a~~l~~~-Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~-----~-~~~ipiia~ 249 (289)
T cd02810 177 DIVELAKAAERA-GADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAAR-----L-QLDIPIIGV 249 (289)
T ss_pred HHHHHHHHHHHc-CCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHh-----c-CCCCCEEEE
Confidence 2234445565 9999999877430000 0000000 00123333344332 1 236899999
Q ss_pred eCCCCHHHHHHHHHcCCCEEEEcccccCC-CChHHHHH
Q 015424 362 SGLFTPDDIAYVQEAGVKAVLVGESIVKQ-DDPGKGIT 398 (407)
Q Consensus 362 SGI~t~eD~~~l~~~GadaVLVGeaLmk~-~dp~~~i~ 398 (407)
|||+|++|+.++..+|||+|-||++++.. ++....++
T Consensus 250 GGI~~~~da~~~l~~GAd~V~vg~a~~~~GP~~~~~i~ 287 (289)
T cd02810 250 GGIDSGEDVLEMLMAGASAVQVATALMWDGPDVIRKIK 287 (289)
T ss_pred CCCCCHHHHHHHHHcCccHheEcHHHHhcCccHHHHHh
Confidence 99999999999999999999999999987 87766654
No 118
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=98.33 E-value=8.9e-06 Score=79.55 Aligned_cols=170 Identities=18% Similarity=0.109 Sum_probs=121.1
Q ss_pred CHHHHHHHHhcCC---CCcEEeccc----------cCCHHHHHHHHHcCCCEEEEeccCC------CHHHHHHHHHHHHH
Q 015424 226 SFENLEAVRSAGV---KCPLLCKEF----------IVDAWQIYYARTKGADAVLLIAAVL------PDLDIRYMTKICKL 286 (407)
Q Consensus 226 s~edL~~Vr~a~v---~lPVL~KDF----------Iid~~QI~eAr~~GADaVLLiaaiL------~~~~L~~Li~~a~~ 286 (407)
.+-+|..+.+. + ++++-..|. =+.+.+ .+++||++|+++++=. +++.+..-++.|.+
T Consensus 44 p~~~L~~~~~~-~~~g~i~~gAQn~~~~~~GA~TGeiS~~m---L~d~G~~~viiGHSERR~~~~E~d~~i~~K~~aa~~ 119 (251)
T COG0149 44 PFTDLRRVAEL-VEIGNIKVGAQNVDPEDSGAFTGEISAEM---LKDLGAKYVLIGHSERRLYFGETDELIAKKVKAAKE 119 (251)
T ss_pred CHHHHHHHHHH-hccCCceEEeccCCcccCCCccCcCCHHH---HHHcCCCEEEECccccccccccchHHHHHHHHHHHH
Confidence 36778877764 3 357776651 144444 4567999999999822 45556677788999
Q ss_pred cCCcEEEEeCCHH--------------HHHHHhcccCC---cEEEeeccccccccccccccccccCchhHHHHhhccccc
Q 015424 287 LGLTALVEVHDER--------------EMDRVLGIEGI---ELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGE 349 (407)
Q Consensus 287 LGL~aLVEVht~e--------------ElerAl~l~Ga---~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~ 349 (407)
.||.++++|.... ++..++..-+. .+|.+...-+||||.+-|+.+.+.-.......+...-+.
T Consensus 120 ~Gl~pIlCvGEtl~~reag~t~~v~~~Ql~~~l~~l~~~~~~vIAYEPvWAIGTG~~at~~~a~~v~~~Ir~~~~~~~~~ 199 (251)
T COG0149 120 AGLTPILCVGETLEEREAGKTLEVLKRQLAAALAALSPEANIVIAYEPVWAIGTGKSASPADAEEVHAFIRAVLAELFGA 199 (251)
T ss_pred CCCeEEEEcCCCHHHHhccChHHHHHHHHHHHHhhcCcccCeEEEECCHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999998666 24444432254 799999999988888777655433222222222221111
Q ss_pred ccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 350 IIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 350 ~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
. .++.+...|||+.-++.+.+.+.++||+|||.+-++.+|+...++.+..
T Consensus 200 ~---~~v~IlYGGSV~~~N~~e~~~~~~idG~LVGgAslka~~f~~ii~~~~~ 249 (251)
T COG0149 200 E---EKVRILYGGSVKPGNAAELAAQPDIDGALVGGASLKADDFLAILEALAK 249 (251)
T ss_pred C---CCeEEEEeCCcChhHHHHHhcCCCCCeEEEcceeecchhHHHHHHHHhh
Confidence 0 4789999999999999999999999999999999999999998887653
No 119
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=98.29 E-value=7.2e-06 Score=78.03 Aligned_cols=162 Identities=14% Similarity=0.222 Sum_probs=98.8
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCCCHH-HHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCCHHH
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFE-NLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLD 276 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~e-dL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~ 276 (407)
+..++|+...+.|+++|-|=+-........+ -++.+|+. +++||+. |.=+..||- -|||+++.. ++|+..+
T Consensus 12 ~~~~ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~-~~lPvil--fp~~~~~i~----~~aD~~~~~-sllns~~ 83 (205)
T TIGR01769 12 EIEKIAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKI-TNLPVIL--FPGNVNGLS----RYADAVFFM-SLLNSAD 83 (205)
T ss_pred HHHHHHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhh-cCCCEEE--ECCCccccC----cCCCEEEEE-EeecCCC
Confidence 4566778889999999987311111111122 24677775 7999987 555555552 589999885 5553222
Q ss_pred HHHHH----HHH---HHcCCcEEEE-------------------e--CCHHHHHHH---hcccCCcEEEeeccccccccc
Q 015424 277 IRYMT----KIC---KLLGLTALVE-------------------V--HDEREMDRV---LGIEGIELIGINNRNLAISIF 325 (407)
Q Consensus 277 L~~Li----~~a---~~LGL~aLVE-------------------V--ht~eElerA---l~l~Ga~iIGINnRdL~~~~~ 325 (407)
-.+++ +.+ +++|++++-| + .+.+|+... .+..|+++|=+. ++ +|+
T Consensus 84 ~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~Le--~~--sGa 159 (205)
T TIGR01769 84 TYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWVYLE--AG--SGA 159 (205)
T ss_pred cchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEEEEE--cC--CCC
Confidence 22222 223 6777766321 1 244444322 222366666663 22 122
Q ss_pred cccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEc
Q 015424 326 SYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVG 384 (407)
Q Consensus 326 ~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVG 384 (407)
...++.+...++.+. .+++++..|||+++++++.+.++|||+|+||
T Consensus 160 -----~~~v~~e~i~~Vk~~--------~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 160 -----SYPVNPETISLVKKA--------SGIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred -----CCCCCHHHHHHHHHh--------hCCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 223556666666553 2578999999999999999999999999998
No 120
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=98.28 E-value=8.9e-05 Score=70.15 Aligned_cols=196 Identities=17% Similarity=0.212 Sum_probs=131.0
Q ss_pred cCCCcCCCCCCC-CHHHHHHHHHHcCCcEEEEEecCCcCCCC----HHHHHHHHhcCCCCc-EE-eccccCCHHH-HHHH
Q 015424 186 ASPSRGILREDF-DPVEIARSYEKGGAACLSILTDEKYFKGS----FENLEAVRSAGVKCP-LL-CKEFIVDAWQ-IYYA 257 (407)
Q Consensus 186 aSPSkG~i~~~~-dp~~iA~ay~~~GA~aISVLTd~~~F~Gs----~edL~~Vr~a~v~lP-VL-~KDFIid~~Q-I~eA 257 (407)
-+|| ++..+| +..+-++.+..+||+.||+-.=...|--+ +--+..+|+. +..| .+ |.=.+..|.| |.+-
T Consensus 7 I~PS--IL~~dfanL~~e~~~~l~~GadwlHlDVMDg~FVpNiT~G~pvV~slR~~-~~~~~ffD~HmMV~~Peq~V~~~ 83 (224)
T KOG3111|consen 7 IAPS--ILSSDFANLAAECKKMLDAGADWLHLDVMDGHFVPNITFGPPVVESLRKH-TGADPFFDVHMMVENPEQWVDQM 83 (224)
T ss_pred echh--hhccchHHHHHHHHHHHHcCCCeEEEeeecccccCCcccchHHHHHHHhc-cCCCcceeEEEeecCHHHHHHHH
Confidence 3566 455555 67777888999999999997655555433 2346667764 4433 33 3334677887 5556
Q ss_pred HHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHHHHhcccCCcEEEeecccccccccccccccccc
Q 015424 258 RTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEV 334 (407)
Q Consensus 258 r~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVh---t~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~v 334 (407)
..+||+.+-.-...-.+ ..++++++++.||.+=+-+. ..+.++..++.-..-+|..-+. |||= ..|-.
T Consensus 84 a~agas~~tfH~E~~q~--~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtVeP-----GFGG--QkFme 154 (224)
T KOG3111|consen 84 AKAGASLFTFHYEATQK--PAELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTVEP-----GFGG--QKFME 154 (224)
T ss_pred HhcCcceEEEEEeeccC--HHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEEEEEecC-----CCch--hhhHH
Confidence 78899999988777654 68899999999999866555 4455555444212223333332 2222 34433
Q ss_pred C-chhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhh
Q 015424 335 D-NSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 401 (407)
Q Consensus 335 D-l~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~ 401 (407)
| +...+.|.+. + .+..+=.-||+ +++.+.++.++||+.++.|++++++.||.+.++.|.
T Consensus 155 ~mm~KV~~lR~k-----y--p~l~ievDGGv-~~~ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr 214 (224)
T KOG3111|consen 155 DMMPKVEWLREK-----Y--PNLDIEVDGGV-GPSTIDKAAEAGANMIVAGSAVFGAADPSDVISLLR 214 (224)
T ss_pred HHHHHHHHHHHh-----C--CCceEEecCCc-CcchHHHHHHcCCCEEEecceeecCCCHHHHHHHHH
Confidence 3 2233344432 2 23233378999 999999999999999999999999999999998775
No 121
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=98.24 E-value=1.1e-05 Score=77.53 Aligned_cols=162 Identities=18% Similarity=0.224 Sum_probs=98.9
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCCCH------H-HHHHHHhcCCC-CcEEeccccCCHHHHHHHHHcCCCEEEEec
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKGSF------E-NLEAVRSAGVK-CPLLCKEFIVDAWQIYYARTKGADAVLLIA 269 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~------e-dL~~Vr~a~v~-lPVL~KDFIid~~QI~eAr~~GADaVLLia 269 (407)
+..++++.+.+.|+++|-| +||. + .+..+++. .+ +||+- |.=++.|+ .-|||++++.
T Consensus 13 ~~~~~~~~~~~~gtdai~v-------GGS~~v~~~~~~~~~~ik~~-~~~~Pvil--fp~~~~~i----~~~aDa~l~~- 77 (219)
T cd02812 13 VDEEIAKLAEESGTDAIMV-------GGSDGVSSTLDNVVRLIKRI-RRPVPVIL--FPSNPEAV----SPGADAYLFP- 77 (219)
T ss_pred CHHHHHHHHHhcCCCEEEE-------CCccchhhhHHHHHHHHHHh-cCCCCEEE--eCCCcccc----CcCCCEEEEE-
Confidence 4567888888899999987 3554 1 23455554 45 88873 22334444 4689999885
Q ss_pred cCCCHHHHHHHHH----HHH---H--cCCcEEEE----------------e---CCHHHHHHHhcccCCcEEEeeccccc
Q 015424 270 AVLPDLDIRYMTK----ICK---L--LGLTALVE----------------V---HDEREMDRVLGIEGIELIGINNRNLA 321 (407)
Q Consensus 270 aiL~~~~L~~Li~----~a~---~--LGL~aLVE----------------V---ht~eElerAl~l~Ga~iIGINnRdL~ 321 (407)
++|+..+-.+++. .+. . .+++++-| + .+.+++..... -++.+|.---+|-
T Consensus 78 svlns~n~~~i~g~~~~~~~~~~~~~~~~e~i~~gYiv~~~~~~v~~v~~a~~~~~~e~~~ayA~--aae~~g~~ivyLe 155 (219)
T cd02812 78 SVLNSGDPYWIIGAQAEAAPEVGKIIPWLELIPEGYLVLNPDSTVARVTGAKTDLKPEDAAAYAL--AAEYLGMPIVYLE 155 (219)
T ss_pred eeecCCCchHHHHHHHHHHHHhccccccccccceEEEEECCCCceeeeeccCcCCCHHHHHHHHH--HHHHcCCeEEEeC
Confidence 5554322222222 222 2 34444221 1 23444432222 2355664434441
Q ss_pred cccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015424 322 ISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 390 (407)
Q Consensus 322 ~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~ 390 (407)
|+.. .+|.+...++.+.. .+++++..|||+|+|+++.+.++|||+|+||+++++.
T Consensus 156 -----~SG~--~~~~e~I~~v~~~~-------~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~~ 210 (219)
T cd02812 156 -----YSGA--YGPPEVVRAVKKVL-------GDTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEED 210 (219)
T ss_pred -----CCCC--cCCHHHHHHHHHhc-------CCCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhCC
Confidence 1111 26777777766531 1578899999999999999999999999999999997
No 122
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=98.23 E-value=8.4e-05 Score=73.15 Aligned_cols=178 Identities=22% Similarity=0.252 Sum_probs=123.0
Q ss_pred CCCcCCCCCCCCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHH-hcCCCCcEEec----cc-c---CCH---HHH
Q 015424 187 SPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVR-SAGVKCPLLCK----EF-I---VDA---WQI 254 (407)
Q Consensus 187 SPSkG~i~~~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr-~a~v~lPVL~K----DF-I---id~---~QI 254 (407)
+|.+| .+||..+.+...++|++++.. .+--++.+- ..+-++|+|.| .- - .+. +++
T Consensus 37 ~p~~g----l~d~e~~v~~v~~~g~dav~~---------~~G~~~~~~~~y~~dvplivkl~~~t~l~~~~~~~~~~~~v 103 (265)
T COG1830 37 NPIEG----LEDPENIVAKVAEAGADAVAM---------TPGIARSVHRGYAHDVPLIVKLNGSTSLSPDPNDQVLVATV 103 (265)
T ss_pred CCccc----ccCHHHHHHHHHhcCCCEEEe---------cHhHHhhcCccccCCcCEEEEeccccccCCCcccceeeeeH
Confidence 46555 579999999999999999886 244444443 22237888743 11 1 111 267
Q ss_pred HHHHHcCCCEEEEeccCCCH------HHHHHHHHHHHHcCCcEEEEe------------CCHHHHH----HHhcccCCcE
Q 015424 255 YYARTKGADAVLLIAAVLPD------LDIRYMTKICKLLGLTALVEV------------HDEREMD----RVLGIEGIEL 312 (407)
Q Consensus 255 ~eAr~~GADaVLLiaaiL~~------~~L~~Li~~a~~LGL~aLVEV------------ht~eEle----rAl~l~Ga~i 312 (407)
.+|..+|||||-.-.-+-+. +++.++.+.|+++||-.++++ ++.+..- .+.++ ||||
T Consensus 104 e~ai~lgadAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaael-GADI 182 (265)
T COG1830 104 EDAIRLGADAVGATVYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAEL-GADI 182 (265)
T ss_pred HHHHhCCCcEEEEEEecCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHh-cCCe
Confidence 88999999998765444432 345566777889999998843 4444444 45677 9999
Q ss_pred EEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCC------HHHHHHHHHcCCCEEEEccc
Q 015424 313 IGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFT------PDDIAYVQEAGVKAVLVGES 386 (407)
Q Consensus 313 IGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t------~eD~~~l~~~GadaVLVGea 386 (407)
|=++ | | -|.+.+.++... -+++||..||=++ .+-...+.++|+.|+.+|.-
T Consensus 183 iK~~---y-------t-----g~~e~F~~vv~~--------~~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRN 239 (265)
T COG1830 183 IKTK---Y-------T-----GDPESFRRVVAA--------CGVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRN 239 (265)
T ss_pred Eeec---C-------C-----CChHHHHHHHHh--------CCCCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhh
Confidence 9885 2 1 133667777765 2378888888887 23345677889999999999
Q ss_pred ccCCCChHHHHHhhh
Q 015424 387 IVKQDDPGKGITGLF 401 (407)
Q Consensus 387 Lmk~~dp~~~i~~L~ 401 (407)
|+..++|...++.+.
T Consensus 240 ifQ~~~p~~m~~Ai~ 254 (265)
T COG1830 240 IFQHEDPEAMVKAIQ 254 (265)
T ss_pred hhccCChHHHHHHHH
Confidence 999999998666554
No 123
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=98.23 E-value=4.2e-05 Score=68.98 Aligned_cols=162 Identities=15% Similarity=0.097 Sum_probs=106.8
Q ss_pred CCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcC-C-CCcEEeccccCC--------HHHHHHHHHcCCCEEE
Q 015424 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAG-V-KCPLLCKEFIVD--------AWQIYYARTKGADAVL 266 (407)
Q Consensus 197 ~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~-v-~lPVL~KDFIid--------~~QI~eAr~~GADaVL 266 (407)
....++++.+.++|+++|.++. +.++.+++.. - ++||+.+=.-.. ..++.+|..+|||+|+
T Consensus 13 ~~~~~~~~~~~~~gv~gi~~~g---------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~ 83 (201)
T cd00945 13 EDIAKLCDEAIEYGFAAVCVNP---------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEID 83 (201)
T ss_pred HHHHHHHHHHHHhCCcEEEECH---------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEE
Confidence 3567788888999999999862 6677776541 2 589886432221 1357778999999999
Q ss_pred EeccCC---C--HHHHHH-HHHHHHH--cCCcEEEEeC-----CHHHHHHH----hcccCCcEEEeeccccccccccccc
Q 015424 267 LIAAVL---P--DLDIRY-MTKICKL--LGLTALVEVH-----DEREMDRV----LGIEGIELIGINNRNLAISIFSYRT 329 (407)
Q Consensus 267 LiaaiL---~--~~~L~~-Li~~a~~--LGL~aLVEVh-----t~eElerA----l~l~Ga~iIGINnRdL~~~~~~~t~ 329 (407)
+..... + .+.+.+ +.+.++. .++.+++... +.+++.++ ... |++.|-...-.
T Consensus 84 v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~-g~~~iK~~~~~---------- 152 (201)
T cd00945 84 VVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEA-GADFIKTSTGF---------- 152 (201)
T ss_pred EeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHh-CCCEEEeCCCC----------
Confidence 975532 2 233333 3344444 4899888776 66666654 233 66665543210
Q ss_pred cccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEc
Q 015424 330 ETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVG 384 (407)
Q Consensus 330 ~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVG 384 (407)
.+-..|+....++.+.. +.++.+++.||+.+++++..+..+|++++.+|
T Consensus 153 ~~~~~~~~~~~~i~~~~------~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 153 GGGGATVEDVKLMKEAV------GGRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred CCCCCCHHHHHHHHHhc------ccCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 01113666677776541 22568999999999999999999999999876
No 124
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.22 E-value=9.6e-05 Score=71.19 Aligned_cols=176 Identities=14% Similarity=0.168 Sum_probs=129.6
Q ss_pred eEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhc-CCCCc--EEeccccCCHHHH
Q 015424 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSA-GVKCP--LLCKEFIVDAWQI 254 (407)
Q Consensus 178 ~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a-~v~lP--VL~KDFIid~~QI 254 (407)
.||+=+.-.+| .+..+++++..++|..+|=|--.. .+.++.++.+++. ....| ++-=.-|+++.|+
T Consensus 16 ~vi~Vvr~~~~--------~~a~~~~~al~~gGi~~iEiT~~t---p~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a 84 (222)
T PRK07114 16 GMVPVFYHADV--------EVAKKVIKACYDGGARVFEFTNRG---DFAHEVFAELVKYAAKELPGMILGVGSIVDAATA 84 (222)
T ss_pred CEEEEEEcCCH--------HHHHHHHHHHHHCCCCEEEEeCCC---CcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHH
Confidence 36665544443 367789999999999988874211 2466777777532 01234 4455678999999
Q ss_pred HHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeecccccccccccccccccc
Q 015424 255 YYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEV 334 (407)
Q Consensus 255 ~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~v 334 (407)
..|..+||+-++- -.+++ +++++|++.|+..+=-|-|..|+..|+++ |+++|=+-.-+. .
T Consensus 85 ~~a~~aGA~FiVs--P~~~~----~v~~~~~~~~i~~iPG~~TpsEi~~A~~~-Ga~~vKlFPA~~-------------~ 144 (222)
T PRK07114 85 ALYIQLGANFIVT--PLFNP----DIAKVCNRRKVPYSPGCGSLSEIGYAEEL-GCEIVKLFPGSV-------------Y 144 (222)
T ss_pred HHHHHcCCCEEEC--CCCCH----HHHHHHHHcCCCEeCCCCCHHHHHHHHHC-CCCEEEECcccc-------------c
Confidence 9999999998654 34444 47899999999999999999999999998 999987754322 1
Q ss_pred CchhHHHHhhcccccccccCCceEEEeeCCCC-HHHHHHHHHcCCCEEEEcccccCCC
Q 015424 335 DNSNTKKLLEGERGEIIRQKNIIVVGESGLFT-PDDIAYVQEAGVKAVLVGESIVKQD 391 (407)
Q Consensus 335 Dl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t-~eD~~~l~~~GadaVLVGeaLmk~~ 391 (407)
.+.-.+.|..- + +++.++.-|||+. .+++....++|+.+|-+|+.|+..+
T Consensus 145 G~~~ikal~~p-----~--p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~~~~ 195 (222)
T PRK07114 145 GPGFVKAIKGP-----M--PWTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLIPKE 195 (222)
T ss_pred CHHHHHHHhcc-----C--CCCeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhcCcc
Confidence 23334445432 2 4689999999964 4899999999999999999998644
No 125
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=98.22 E-value=1.2e-05 Score=78.92 Aligned_cols=159 Identities=21% Similarity=0.322 Sum_probs=97.1
Q ss_pred HHHHHHHHhcCCCCcEEeccccCCHH------HHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEE--EEe-CC
Q 015424 227 FENLEAVRSAGVKCPLLCKEFIVDAW------QIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTAL--VEV-HD 297 (407)
Q Consensus 227 ~edL~~Vr~a~v~lPVL~KDFIid~~------QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aL--VEV-ht 297 (407)
++.++.+|+...++|++.--+..+-+ -+.++.++|+|++++ --|+.++-.++.+.|++.|++.+ |-- .+
T Consensus 75 ~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIi--pDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~ 152 (259)
T PF00290_consen 75 FELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLII--PDLPPEESEELREAAKKHGLDLIPLVAPTTP 152 (259)
T ss_dssp HHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEE--TTSBGGGHHHHHHHHHHTT-EEEEEEETTS-
T ss_pred HHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEE--cCCChHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 56678888223899998655432222 245678999999876 45666778889999999999884 443 24
Q ss_pred HHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcC
Q 015424 298 EREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAG 377 (407)
Q Consensus 298 ~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~G 377 (407)
.+.+++..+. ...+|-.-.+ .|.|...-..+ +...++++.++. . .+.+++..=||+++++++.+. .|
T Consensus 153 ~~Ri~~i~~~-a~gFiY~vs~------~GvTG~~~~~~-~~l~~~i~~ik~--~--~~~Pv~vGFGI~~~e~~~~~~-~~ 219 (259)
T PF00290_consen 153 EERIKKIAKQ-ASGFIYLVSR------MGVTGSRTELP-DELKEFIKRIKK--H--TDLPVAVGFGISTPEQAKKLA-AG 219 (259)
T ss_dssp HHHHHHHHHH--SSEEEEESS------SSSSSTTSSCH-HHHHHHHHHHHH--T--TSS-EEEESSS-SHHHHHHHH-TT
T ss_pred HHHHHHHHHh-CCcEEEeecc------CCCCCCcccch-HHHHHHHHHHHh--h--cCcceEEecCCCCHHHHHHHH-cc
Confidence 5566665554 3334443222 23333322222 222333333221 1 367899999999999999999 99
Q ss_pred CCEEEEcccccCC-----CChHHHHHhh
Q 015424 378 VKAVLVGESIVKQ-----DDPGKGITGL 400 (407)
Q Consensus 378 adaVLVGeaLmk~-----~dp~~~i~~L 400 (407)
+|||+||++|++. .+..+.++++
T Consensus 220 aDGvIVGSa~v~~i~~~~~~~~~~~~~~ 247 (259)
T PF00290_consen 220 ADGVIVGSAFVKIIEENGDDAEKFLKEL 247 (259)
T ss_dssp SSEEEESHHHHHHHHHTCCHHHHHHHHH
T ss_pred CCEEEECHHHHHHHHHccccHHHHHHHH
Confidence 9999999999864 3344444444
No 126
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=98.22 E-value=1.6e-05 Score=80.12 Aligned_cols=125 Identities=21% Similarity=0.214 Sum_probs=85.1
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeecccccccccccccc
Q 015424 251 AWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTE 330 (407)
Q Consensus 251 ~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~ 330 (407)
..|+..+...+.+.|.+..-.-+. .+++.++..|+.++..|.|.+++.++.+. |+|.|-+...+==||..
T Consensus 103 ~~~~~~~~~~~~~~v~~~~G~p~~----~~i~~l~~~gi~v~~~v~s~~~A~~a~~~-G~D~iv~qG~eAGGH~g----- 172 (330)
T PF03060_consen 103 EEQLDVALEAKPDVVSFGFGLPPP----EVIERLHAAGIKVIPQVTSVREARKAAKA-GADAIVAQGPEAGGHRG----- 172 (330)
T ss_dssp HHHHHHHHHS--SEEEEESSSC-H----HHHHHHHHTT-EEEEEESSHHHHHHHHHT-T-SEEEEE-TTSSEE-------
T ss_pred ccccccccccceEEEEeecccchH----HHHHHHHHcCCccccccCCHHHHHHhhhc-CCCEEEEeccccCCCCC-----
Confidence 446777778899999987655433 36788899999999999999999999997 99999888775422111
Q ss_pred ccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCC
Q 015424 331 TFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD 392 (407)
Q Consensus 331 Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~d 392 (407)
+++. .+..|.+.++.. -+++||+.|||.+.+++..++.+||+||.+|+.++-...
T Consensus 173 -~~~~--~~~~L~~~v~~~----~~iPViaAGGI~dg~~iaaal~lGA~gV~~GTrFl~t~E 227 (330)
T PF03060_consen 173 -FEVG--STFSLLPQVRDA----VDIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEE 227 (330)
T ss_dssp --SSG---HHHHHHHHHHH-----SS-EEEESS--SHHHHHHHHHCT-SEEEESHHHHTSTT
T ss_pred -cccc--ceeeHHHHHhhh----cCCcEEEecCcCCHHHHHHHHHcCCCEeecCCeEEeccc
Confidence 1111 344555443221 358999999999999999999999999999999986554
No 127
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=98.17 E-value=4e-05 Score=73.92 Aligned_cols=162 Identities=20% Similarity=0.259 Sum_probs=101.0
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCCCH----HH----HHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEec
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKGSF----EN----LEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA 269 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~----ed----L~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLia 269 (407)
...+.++...+.|.++|-| +||. ++ +..+|+. .+||+- |.=++.||- -|||++++.
T Consensus 15 ~~~~~~~~~~~~gtdai~v-------GGS~~vt~~~~~~~v~~ik~~--~lPvil--fp~~~~~i~----~~aDa~l~~- 78 (223)
T TIGR01768 15 EADEIAKAAAESGTDAILI-------GGSQGVTYEKTDTLIEALRRY--GLPIIL--FPSNPTNVS----RDADALFFP- 78 (223)
T ss_pred ccHHHHHHHHhcCCCEEEE-------cCCCcccHHHHHHHHHHHhcc--CCCEEE--eCCCccccC----cCCCEEEEE-
Confidence 3567888889999999987 4554 33 4566653 599986 655566653 589999885
Q ss_pred cCCCHHHHHHHH-------HHHHHcCCcEEE-------------------Ee-CCHHHHHHHhcc----cCCcEEEeecc
Q 015424 270 AVLPDLDIRYMT-------KICKLLGLTALV-------------------EV-HDEREMDRVLGI----EGIELIGINNR 318 (407)
Q Consensus 270 aiL~~~~L~~Li-------~~a~~LGL~aLV-------------------EV-ht~eElerAl~l----~Ga~iIGINnR 318 (407)
++|+..+-.+++ ...++++++++- .+ .+.+|+..+..+ -|..++-+.
T Consensus 79 svlNs~~~~~iig~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~~p~~~~~~aa~~~lA~~~~g~~~vYlE-- 156 (223)
T TIGR01768 79 SVLNSDDPYWIIGAQIEAAPKFKKIGEEIIPEGYIIVNPGGAAARVTKAKPIPYDKEDLAAYAAMAEEMLGMPIIYLE-- 156 (223)
T ss_pred EeecCCCchHHHhHHHHHHHHHhhhcceecceEEEEECCCcceeecccccccCCCcHHHHHHHHHHHHHcCCcEEEEE--
Confidence 455322222222 223344565532 12 455565555444 133344332
Q ss_pred ccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015424 319 NLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 391 (407)
Q Consensus 319 dL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 391 (407)
+ ++++ .-.++.+...++.+.. .+++++..|||+++++++.+.++|||+|+||+.+.+.+
T Consensus 157 -~-gs~~-----g~~v~~e~i~~v~~~~-------~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~dp 215 (223)
T TIGR01768 157 -A-GSGA-----PEPVPPELVAEVKKVL-------DKARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEEDV 215 (223)
T ss_pred -e-cCCC-----CCCcCHHHHHHHHHHc-------CCCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhCH
Confidence 1 1111 1224555555555431 25678889999999999999999999999999999873
No 128
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=98.14 E-value=0.00014 Score=71.85 Aligned_cols=153 Identities=15% Similarity=0.086 Sum_probs=95.3
Q ss_pred CCCcEEeccccCCHHHHHHH----HHc--CCCEEEEeccCC-----------CHHHHHHHHHHHHH-cCCcEEEEeC-CH
Q 015424 238 VKCPLLCKEFIVDAWQIYYA----RTK--GADAVLLIAAVL-----------PDLDIRYMTKICKL-LGLTALVEVH-DE 298 (407)
Q Consensus 238 v~lPVL~KDFIid~~QI~eA----r~~--GADaVLLiaaiL-----------~~~~L~~Li~~a~~-LGL~aLVEVh-t~ 298 (407)
.+.|++..=+..++.++.++ ..+ +||+|-|....- +.+.+.++++..++ .++.++|-+. +.
T Consensus 89 ~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~~~ 168 (300)
T TIGR01037 89 FPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSPNV 168 (300)
T ss_pred CCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCCCh
Confidence 35688765445556554432 122 499999987631 33567777777775 4888888887 43
Q ss_pred H---HH-HHHhcccCCcEEEeecccccccc--c-----------cccccc-cccCchhHHHHhhcccccccccCCceEEE
Q 015424 299 R---EM-DRVLGIEGIELIGINNRNLAISI--F-----------SYRTET-FEVDNSNTKKLLEGERGEIIRQKNIIVVG 360 (407)
Q Consensus 299 e---El-erAl~l~Ga~iIGINnRdL~~~~--~-----------~~t~~T-f~vDl~~t~~L~~~~~~~~i~~~~v~vVA 360 (407)
+ ++ +.+.++ |++.|-+-|+-..-.. . +++... ....++...++.+. -++++|+
T Consensus 169 ~~~~~~a~~l~~~-G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~--------~~ipvi~ 239 (300)
T TIGR01037 169 TDITEIAKAAEEA-GADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKM--------VDIPIIG 239 (300)
T ss_pred hhHHHHHHHHHHc-CCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhc--------CCCCEEE
Confidence 3 33 344454 9999987654220000 0 000000 00112233333332 2579999
Q ss_pred eeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHh
Q 015424 361 ESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITG 399 (407)
Q Consensus 361 ESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~ 399 (407)
.|||.|++|+.++..+|||+|.||++++..++....+++
T Consensus 240 ~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~ 278 (300)
T TIGR01037 240 VGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIE 278 (300)
T ss_pred ECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHH
Confidence 999999999999999999999999999988876555443
No 129
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=98.14 E-value=0.00018 Score=70.57 Aligned_cols=184 Identities=18% Similarity=0.198 Sum_probs=116.2
Q ss_pred CCHHHHHHHHHHcCCcEEEEEecCCcCC---CCHHHHHHHHhcCCCCcEE---eccccCCH-HHH-HHHHHcC-------
Q 015424 197 FDPVEIARSYEKGGAACLSILTDEKYFK---GSFENLEAVRSAGVKCPLL---CKEFIVDA-WQI-YYARTKG------- 261 (407)
Q Consensus 197 ~dp~~iA~ay~~~GA~aISVLTd~~~F~---Gs~edL~~Vr~a~v~lPVL---~KDFIid~-~QI-~eAr~~G------- 261 (407)
-++..+.++.+..|+..+-|-.-..-+. |....+..+... .+-+| ..-+--.+ ..+ ..||+++
T Consensus 27 ~s~~~~~~ai~aSg~evvTvalRR~~~~~~~~~~~~l~~i~~~--~~~~LPNTaGc~tA~EAv~~A~laRe~~~~~~~~~ 104 (267)
T CHL00162 27 KSLKDAIQSIEASGCEIVTVAIRRLNNNLLNDNSNLLNGLDWN--KLWLLPNTAGCQTAEEAIRMAFLGRELAKQLGQED 104 (267)
T ss_pred CCHHHHHHHHHHhCCcEEEEEEEEeccCcCCCcchHHHhhchh--ccEECCcCcCCCCHHHHHHHHHHHHHHhccccccC
Confidence 3788899999999998887765433322 334455556532 34444 11110111 111 1256664
Q ss_pred CCEEEEec----c-CCCHHHHHHHHHHHHHc---CCcEEEEeC-CHHHHHHHhcccCCcEEEeecccccccccccccccc
Q 015424 262 ADAVLLIA----A-VLPDLDIRYMTKICKLL---GLTALVEVH-DEREMDRVLGIEGIELIGINNRNLAISIFSYRTETF 332 (407)
Q Consensus 262 ADaVLLia----a-iL~~~~L~~Li~~a~~L---GL~aLVEVh-t~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf 332 (407)
-|-|=|=+ . .++| -.++++.++.| |..+|.=++ |.--+++..++ |+..|.--.. -|+++.|..
T Consensus 105 ~~wIKLEVi~D~~~LlPD--~~etl~Aae~Lv~eGF~VlPY~~~D~v~a~rLed~-Gc~aVMPlgs-PIGSg~Gl~---- 176 (267)
T CHL00162 105 NNFVKLEVISDPKYLLPD--PIGTLKAAEFLVKKGFTVLPYINADPMLAKHLEDI-GCATVMPLGS-PIGSGQGLQ---- 176 (267)
T ss_pred CCeEEEEEeCCCcccCCC--hHHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHc-CCeEEeeccC-cccCCCCCC----
Confidence 66665522 2 3333 35677777776 999998877 55566676676 8887765321 123333332
Q ss_pred ccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhh
Q 015424 333 EVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 400 (407)
Q Consensus 333 ~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L 400 (407)
|....+-+.+. .++++|.-+||.+++|+..++++|+||||+.++|++++||.+..+.+
T Consensus 177 --n~~~l~~i~e~--------~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~ 234 (267)
T CHL00162 177 --NLLNLQIIIEN--------AKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAM 234 (267)
T ss_pred --CHHHHHHHHHc--------CCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHH
Confidence 33333344432 35899999999999999999999999999999999999996655443
No 130
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=98.14 E-value=0.00011 Score=72.54 Aligned_cols=153 Identities=14% Similarity=0.089 Sum_probs=92.3
Q ss_pred CCCcEEeccccCCHHHHH----HHHHcC-CCEEEEecc----------CC-CHHHHHHHHHHHHHc-CCcEEEEeC-CH-
Q 015424 238 VKCPLLCKEFIVDAWQIY----YARTKG-ADAVLLIAA----------VL-PDLDIRYMTKICKLL-GLTALVEVH-DE- 298 (407)
Q Consensus 238 v~lPVL~KDFIid~~QI~----eAr~~G-ADaVLLiaa----------iL-~~~~L~~Li~~a~~L-GL~aLVEVh-t~- 298 (407)
.+.||+..=+..++.+.. .+..+| +|+|=|... .+ +.+.+.++++..++. .+.++|-+. +.
T Consensus 90 ~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~ 169 (301)
T PRK07259 90 FDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNVT 169 (301)
T ss_pred cCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCch
Confidence 468887533233343322 245678 999988542 22 345567777777764 677777555 33
Q ss_pred --HHH-HHHhcccCCcEEEeecccccccc-------------ccccccc-cccCchhHHHHhhcccccccccCCceEEEe
Q 015424 299 --REM-DRVLGIEGIELIGINNRNLAISI-------------FSYRTET-FEVDNSNTKKLLEGERGEIIRQKNIIVVGE 361 (407)
Q Consensus 299 --eEl-erAl~l~Ga~iIGINnRdL~~~~-------------~~~t~~T-f~vDl~~t~~L~~~~~~~~i~~~~v~vVAE 361 (407)
.++ +.+.+. |++.|-+.|+-....+ .+++... ....+....++.+. -++++|+.
T Consensus 170 ~~~~~a~~l~~~-G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~--------~~ipvi~~ 240 (301)
T PRK07259 170 DIVEIAKAAEEA-GADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQA--------VDIPIIGM 240 (301)
T ss_pred hHHHHHHHHHHc-CCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHh--------CCCCEEEE
Confidence 333 344454 8998776554220000 0010000 11233333444332 25799999
Q ss_pred eCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHh
Q 015424 362 SGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITG 399 (407)
Q Consensus 362 SGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~ 399 (407)
|||.|++|+.++..+|||+|-||++++..++....+++
T Consensus 241 GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~ 278 (301)
T PRK07259 241 GGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIE 278 (301)
T ss_pred CCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHH
Confidence 99999999999999999999999999997766555443
No 131
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=98.14 E-value=3.2e-05 Score=73.21 Aligned_cols=181 Identities=18% Similarity=0.214 Sum_probs=118.5
Q ss_pred CCCHHHHHHHHHHcCCcEEEEEecCCcC----CCCHHHHHHHHhcCCCCcEEeccccCCHH-HHHHHHHcCCCEEEEecc
Q 015424 196 DFDPVEIARSYEKGGAACLSILTDEKYF----KGSFENLEAVRSAGVKCPLLCKEFIVDAW-QIYYARTKGADAVLLIAA 270 (407)
Q Consensus 196 ~~dp~~iA~ay~~~GA~aISVLTd~~~F----~Gs~edL~~Vr~a~v~lPVL~KDFIid~~-QI~eAr~~GADaVLLiaa 270 (407)
..+..+..+.++++|+..+|+=--.+.| .-+++.++.+|+. +++|+=.-=.+.+|. .|.+...+|||.|.+-..
T Consensus 11 ~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~~~g~~~i~~i~~~-~~~~~DvHLMv~~P~~~i~~~~~~g~~~i~~H~E 89 (201)
T PF00834_consen 11 FLNLEEEIKRLEEAGADWLHIDIMDGHFVPNLTFGPDIIKAIRKI-TDLPLDVHLMVENPERYIEEFAEAGADYITFHAE 89 (201)
T ss_dssp GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSSB-B-HHHHHHHHTT-SSSEEEEEEESSSGGGHHHHHHHHT-SEEEEEGG
T ss_pred HHHHHHHHHHHHHcCCCEEEEeecccccCCcccCCHHHHHHHhhc-CCCcEEEEeeeccHHHHHHHHHhcCCCEEEEccc
Confidence 3477888899999999999997544444 3478999999986 888864322333454 455668889999999888
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHHHHhcccCCcEEEeeccccccccccccccccccC-chhHHHHhhcc
Q 015424 271 VLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVD-NSNTKKLLEGE 346 (407)
Q Consensus 271 iL~~~~L~~Li~~a~~LGL~aLVEVh---t~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vD-l~~t~~L~~~~ 346 (407)
..+ ++.++++++++.|+.+-+=+. ..+.++..+. ..|.|-+=..+- |+....|... ++...++.+..
T Consensus 90 ~~~--~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~--~vD~VlvMsV~P-----G~~Gq~f~~~~~~KI~~l~~~~ 160 (201)
T PF00834_consen 90 ATE--DPKETIKYIKEAGIKAGIALNPETPVEELEPYLD--QVDMVLVMSVEP-----GFGGQKFIPEVLEKIRELRKLI 160 (201)
T ss_dssp GTT--THHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGC--CSSEEEEESS-T-----TTSSB--HGGHHHHHHHHHHHH
T ss_pred chh--CHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhh--hcCEEEEEEecC-----CCCcccccHHHHHHHHHHHHHH
Confidence 554 567899999999999866655 3344555554 367766644432 4444555433 23333343332
Q ss_pred cccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015424 347 RGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 390 (407)
Q Consensus 347 ~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~ 390 (407)
+.. ..++.+-.-||| +.+.+..+.++|||.+++|++|+++
T Consensus 161 ~~~---~~~~~I~vDGGI-~~~~~~~~~~aGad~~V~Gs~iF~~ 200 (201)
T PF00834_consen 161 PEN---GLDFEIEVDGGI-NEENIKQLVEAGADIFVAGSAIFKA 200 (201)
T ss_dssp HHH---TCGSEEEEESSE-STTTHHHHHHHT--EEEESHHHHTS
T ss_pred Hhc---CCceEEEEECCC-CHHHHHHHHHcCCCEEEECHHHhCC
Confidence 111 135788899999 7789999999999999999999875
No 132
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.12 E-value=1.9e-05 Score=78.07 Aligned_cols=95 Identities=14% Similarity=0.261 Sum_probs=72.4
Q ss_pred HHHHHHHHHHH-cC--CcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccc
Q 015424 276 DIRYMTKICKL-LG--LTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIR 352 (407)
Q Consensus 276 ~L~~Li~~a~~-LG--L~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~ 352 (407)
.+.+.++.+++ +. ....|||.|.+|+..|+++ |+|+|...|-++ +...++++..+. .
T Consensus 167 ~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~-GaDiI~LDn~~~----------------e~l~~~v~~~~~-~-- 226 (273)
T PRK05848 167 DLKEFIQHARKNIPFTAKIEIECESLEEAKNAMNA-GADIVMCDNMSV----------------EEIKEVVAYRNA-N-- 226 (273)
T ss_pred cHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHc-CCCEEEECCCCH----------------HHHHHHHHHhhc-c--
Confidence 34566666666 33 6789999999999999997 999999754433 445555543211 1
Q ss_pred cCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015424 353 QKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 391 (407)
Q Consensus 353 ~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 391 (407)
.+++.+.++||| |++.+..+.+.|+|.+.+|......+
T Consensus 227 ~~~~~ieAsGgI-t~~ni~~ya~~GvD~IsvG~l~~sa~ 264 (273)
T PRK05848 227 YPHVLLEASGNI-TLENINAYAKSGVDAISSGSLIHQAT 264 (273)
T ss_pred CCCeEEEEECCC-CHHHHHHHHHcCCCEEEeChhhcCCC
Confidence 136789999999 99999999999999999999877543
No 133
>PRK08227 autoinducer 2 aldolase; Validated
Probab=98.07 E-value=0.00023 Score=70.22 Aligned_cols=123 Identities=15% Similarity=0.149 Sum_probs=87.3
Q ss_pred HHHHHHHcCCCEEEEeccCCCH------HHHHHHHHHHHHcCCcEEEEe------CCHHH-----HHHHhcccCCcEEEe
Q 015424 253 QIYYARTKGADAVLLIAAVLPD------LDIRYMTKICKLLGLTALVEV------HDERE-----MDRVLGIEGIELIGI 315 (407)
Q Consensus 253 QI~eAr~~GADaVLLiaaiL~~------~~L~~Li~~a~~LGL~aLVEV------ht~eE-----lerAl~l~Ga~iIGI 315 (407)
.+.+|..+|||+|-.-.-+-++ .++.++.+.|+++||-.|+.. ++..+ ...+.++ |||+|=+
T Consensus 99 sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRiaaEL-GADiVK~ 177 (264)
T PRK08227 99 DMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRIAAEM-GAQIIKT 177 (264)
T ss_pred cHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHHHHHH-cCCEEec
Confidence 4789999999999886655543 245556677888999988722 22222 3456777 9999988
Q ss_pred eccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCH-H----HHHHHHHcCCCEEEEcccccCC
Q 015424 316 NNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTP-D----DIAYVQEAGVKAVLVGESIVKQ 390 (407)
Q Consensus 316 NnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~-e----D~~~l~~~GadaVLVGeaLmk~ 390 (407)
+ | | . +.+.++... -.++||..||=++. + .+....++|+.||.+|.-+...
T Consensus 178 ~---y-------~------~-~~f~~vv~a--------~~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~ 232 (264)
T PRK08227 178 Y---Y-------V------E-EGFERITAG--------CPVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQS 232 (264)
T ss_pred C---C-------C------H-HHHHHHHHc--------CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhcc
Confidence 4 2 1 1 445666653 24678888888742 2 3455677899999999999999
Q ss_pred CChHHHHHhhh
Q 015424 391 DDPGKGITGLF 401 (407)
Q Consensus 391 ~dp~~~i~~L~ 401 (407)
+||.+.++.|.
T Consensus 233 ~~p~~~~~al~ 243 (264)
T PRK08227 233 EHPVAMIKAVH 243 (264)
T ss_pred CCHHHHHHHHH
Confidence 99997777664
No 134
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=98.07 E-value=0.00015 Score=68.15 Aligned_cols=148 Identities=17% Similarity=0.195 Sum_probs=95.5
Q ss_pred CCCcEEeccccCCHHHHH----HHHHcCCCEEEEeccC--------------C-CHHHHHHHHHHHHH-cCCcEEEEeC-
Q 015424 238 VKCPLLCKEFIVDAWQIY----YARTKGADAVLLIAAV--------------L-PDLDIRYMTKICKL-LGLTALVEVH- 296 (407)
Q Consensus 238 v~lPVL~KDFIid~~QI~----eAr~~GADaVLLiaai--------------L-~~~~L~~Li~~a~~-LGL~aLVEVh- 296 (407)
.+.|++..=..-++.+.. .+..+|+|+|=|.+.. + ....+.++++..++ .++.+.|-+.
T Consensus 53 ~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~ 132 (231)
T cd02801 53 EERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRL 132 (231)
T ss_pred cCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEee
Confidence 356776443334454333 3456799999987543 2 23345566666554 4545544432
Q ss_pred ------CHHHH-HHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHH
Q 015424 297 ------DEREM-DRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDD 369 (407)
Q Consensus 297 ------t~eEl-erAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD 369 (407)
+..++ ....++ |++.|-+..|..-+ . .....+++...++.+. .++++++-|||.+++|
T Consensus 133 ~~~~~~~~~~~~~~l~~~-Gvd~i~v~~~~~~~---~---~~~~~~~~~~~~i~~~--------~~ipvi~~Ggi~~~~d 197 (231)
T cd02801 133 GWDDEEETLELAKALEDA-GASALTVHGRTREQ---R---YSGPADWDYIAEIKEA--------VSIPVIANGDIFSLED 197 (231)
T ss_pred ccCCchHHHHHHHHHHHh-CCCEEEECCCCHHH---c---CCCCCCHHHHHHHHhC--------CCCeEEEeCCCCCHHH
Confidence 22233 233344 88999887764300 0 1123466666666543 3689999999999999
Q ss_pred HHHHHHc-CCCEEEEcccccCCCChHHHHHhh
Q 015424 370 IAYVQEA-GVKAVLVGESIVKQDDPGKGITGL 400 (407)
Q Consensus 370 ~~~l~~~-GadaVLVGeaLmk~~dp~~~i~~L 400 (407)
+.++.+. |+|+|.+|.+++..++....+++.
T Consensus 198 ~~~~l~~~gad~V~igr~~l~~P~~~~~~~~~ 229 (231)
T cd02801 198 ALRCLEQTGVDGVMIGRGALGNPWLFREIKEL 229 (231)
T ss_pred HHHHHHhcCCCEEEEcHHhHhCCHHHHhhhhc
Confidence 9999998 899999999999999887777653
No 135
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=98.06 E-value=0.00017 Score=72.00 Aligned_cols=149 Identities=18% Similarity=0.224 Sum_probs=101.5
Q ss_pred CCcEEeccccCCHHHHHHH----HHcCCCEEEEeccC--------------C-CHHHHHHHHHHHHH-cCCcEEEEeC--
Q 015424 239 KCPLLCKEFIVDAWQIYYA----RTKGADAVLLIAAV--------------L-PDLDIRYMTKICKL-LGLTALVEVH-- 296 (407)
Q Consensus 239 ~lPVL~KDFIid~~QI~eA----r~~GADaVLLiaai--------------L-~~~~L~~Li~~a~~-LGL~aLVEVh-- 296 (407)
+.|+...=+.-++.++.+| ..+|+|+|=|.... + ....+.++++..++ .++.+.|-++
T Consensus 62 ~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g 141 (319)
T TIGR00737 62 ETPISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIG 141 (319)
T ss_pred cceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcc
Confidence 5677766666677665443 46799999887653 2 22334455555543 5666666542
Q ss_pred ------CHHHH-HHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHH
Q 015424 297 ------DEREM-DRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDD 369 (407)
Q Consensus 297 ------t~eEl-erAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD 369 (407)
+..++ ..+.+. |++.|-+..|... .+|+ -..+++...++.+. -++++++-|||.|++|
T Consensus 142 ~~~~~~~~~~~a~~l~~~-G~d~i~vh~r~~~---~~~~---~~~~~~~i~~i~~~--------~~ipvi~nGgI~~~~d 206 (319)
T TIGR00737 142 WDDAHINAVEAARIAEDA-GAQAVTLHGRTRA---QGYS---GEANWDIIARVKQA--------VRIPVIGNGDIFSPED 206 (319)
T ss_pred cCCCcchHHHHHHHHHHh-CCCEEEEEccccc---ccCC---CchhHHHHHHHHHc--------CCCcEEEeCCCCCHHH
Confidence 23344 344454 9999999877541 1111 13566666666654 2479999999999999
Q ss_pred HHHHH-HcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 370 IAYVQ-EAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 370 ~~~l~-~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
+..+. ..|||+|.||.+++..++....+++.+.
T Consensus 207 a~~~l~~~gad~VmigR~~l~~P~l~~~~~~~~~ 240 (319)
T TIGR00737 207 AKAMLETTGCDGVMIGRGALGNPWLFRQIEQYLT 240 (319)
T ss_pred HHHHHHhhCCCEEEEChhhhhCChHHHHHHHHHh
Confidence 99998 6799999999999999998888877654
No 136
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=98.06 E-value=0.00011 Score=74.79 Aligned_cols=173 Identities=19% Similarity=0.159 Sum_probs=108.9
Q ss_pred HHHHHHHHHcCC-cEEEEEecCCcCCCCHHHHHHHHhcCCCCcE-----EeccccCCHHHHHHHHHcCCCEEEEeccCC-
Q 015424 200 VEIARSYEKGGA-ACLSILTDEKYFKGSFENLEAVRSAGVKCPL-----LCKEFIVDAWQIYYARTKGADAVLLIAAVL- 272 (407)
Q Consensus 200 ~~iA~ay~~~GA-~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPV-----L~KDFIid~~QI~eAr~~GADaVLLiaaiL- 272 (407)
..+|++..+.|. -++|-. -.-+++++.... ..+.|. ..||--+....+..|..+|++++.|-+-..
T Consensus 84 ~~~AraA~~~gi~~~lss~-----s~~s~e~v~~~~--~~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~ 156 (344)
T cd02922 84 LNLARAAGKHGILQMISTN-----ASCSLEEIVDAR--PPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPV 156 (344)
T ss_pred HHHHHHHHHcCCCEEecCc-----ccCCHHHHHHhc--CCCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 678999999884 333322 123677764331 123465 245544445577889999999999854332
Q ss_pred -C----------------------------------------HHHHHHHHHHHHHcCCc-EEEEeCCHHHHHHHhcccCC
Q 015424 273 -P----------------------------------------DLDIRYMTKICKLLGLT-ALVEVHDEREMDRVLGIEGI 310 (407)
Q Consensus 273 -~----------------------------------------~~~L~~Li~~a~~LGL~-aLVEVht~eElerAl~l~Ga 310 (407)
. ...++.+-......++. .+-+|.+.+++.++.++ |+
T Consensus 157 ~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~-G~ 235 (344)
T cd02922 157 LGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEY-GV 235 (344)
T ss_pred cCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHHHHHhcCCcEEEEcCCCHHHHHHHHHc-CC
Confidence 0 01122333333345555 47789999999999997 99
Q ss_pred cEEEeeccccccccccccccccccCchh---HHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccc
Q 015424 311 ELIGINNRNLAISIFSYRTETFEVDNSN---TKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESI 387 (407)
Q Consensus 311 ~iIGINnRdL~~~~~~~t~~Tf~vDl~~---t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaL 387 (407)
+.|-+-|..- ..+...... ..++....+. + ...+.+|+.|||.+..|+.++..+||++|.||+.+
T Consensus 236 d~I~vsnhgG---------~~~d~~~~~~~~L~~i~~~~~~--~-~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~ 303 (344)
T cd02922 236 DGIVLSNHGG---------RQLDTAPAPIEVLLEIRKHCPE--V-FDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPF 303 (344)
T ss_pred CEEEEECCCc---------ccCCCCCCHHHHHHHHHHHHHH--h-CCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 9888876432 111111112 1122221000 1 13589999999999999999999999999999999
Q ss_pred cCCCC
Q 015424 388 VKQDD 392 (407)
Q Consensus 388 mk~~d 392 (407)
+...-
T Consensus 304 l~~l~ 308 (344)
T cd02922 304 LYALS 308 (344)
T ss_pred HHHHh
Confidence 87553
No 137
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=98.04 E-value=0.00031 Score=69.70 Aligned_cols=152 Identities=13% Similarity=0.074 Sum_probs=94.8
Q ss_pred CCcEEeccccC-CHHHHHH----HHHcCCCEEEEeccCC--------------CHHHHHHHHHHHHH-cCCcEEEEeC--
Q 015424 239 KCPLLCKEFIV-DAWQIYY----ARTKGADAVLLIAAVL--------------PDLDIRYMTKICKL-LGLTALVEVH-- 296 (407)
Q Consensus 239 ~lPVL~KDFIi-d~~QI~e----Ar~~GADaVLLiaaiL--------------~~~~L~~Li~~a~~-LGL~aLVEVh-- 296 (407)
+.|++..=+.- ++.+..+ +...|||+|=|+...- +++.+.++++..++ .++.++|-++
T Consensus 99 ~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~ 178 (299)
T cd02940 99 DKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTPN 178 (299)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCCC
Confidence 47887655554 5544332 2346999999987742 34567777777764 4677777766
Q ss_pred --CHHHH-HHHhcccCCcEEEeecccccc------c--------c----ccccccc-cccCchhHHHHhhcccccccccC
Q 015424 297 --DEREM-DRVLGIEGIELIGINNRNLAI------S--------I----FSYRTET-FEVDNSNTKKLLEGERGEIIRQK 354 (407)
Q Consensus 297 --t~eEl-erAl~l~Ga~iIGINnRdL~~------~--------~----~~~t~~T-f~vDl~~t~~L~~~~~~~~i~~~ 354 (407)
+..++ +.+.+. |++-|-+.|+-..- + + .+|+... +...++...++.+. + +.
T Consensus 179 ~~~~~~~a~~~~~~-Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~-----~-~~ 251 (299)
T cd02940 179 ITDIREIARAAKEG-GADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARA-----P-EP 251 (299)
T ss_pred chhHHHHHHHHHHc-CCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHh-----c-CC
Confidence 23344 445564 99977766543200 0 0 0111100 11123334444332 1 23
Q ss_pred CceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccC-CCChHHHH
Q 015424 355 NIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK-QDDPGKGI 397 (407)
Q Consensus 355 ~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk-~~dp~~~i 397 (407)
++++|+-|||.+.+|+.++..+||++|.||+++|. .++....+
T Consensus 252 ~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~~g~~~~~~i 295 (299)
T cd02940 252 GLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMNQGFTIVDDM 295 (299)
T ss_pred CCcEEEECCCCCHHHHHHHHHcCCChheEceeecccCCcHHHHH
Confidence 68999999999999999999999999999999988 66655444
No 138
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=98.02 E-value=0.00021 Score=68.17 Aligned_cols=187 Identities=16% Similarity=0.144 Sum_probs=114.9
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEe--ccccCCHHHHHHHHHcCCCEEEEeccCCCHH
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLC--KEFIVDAWQIYYARTKGADAVLLIAAVLPDL 275 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~--KDFIid~~QI~eAr~~GADaVLLiaaiL~~~ 275 (407)
+..++++.... ....+-|=| +-|...++.-++.+|+...+.||++ |=+=++.+-...+..+|||.+.+-+.. ++.
T Consensus 17 ~a~~l~~~l~~-~v~~~kvG~-~l~~~~G~~~i~~lk~~~~~~~v~~DLK~~Di~~~v~~~~~~~Gad~vTvH~~a-~~~ 93 (216)
T PRK13306 17 SAIEDAKKVAE-EVDIIEVGT-ILLLAEGMKAVRVLRALYPDKIIVADTKIADAGKILAKMAFEAGADWVTVICAA-HIP 93 (216)
T ss_pred HHHHHHHHccc-cCCEEEECh-HHHHHhCHHHHHHHHHHCCCCEEEEEEeecCCcHHHHHHHHHCCCCEEEEeCCC-CHH
Confidence 34455555443 234555533 4456667888999987535778874 211144443334778999999997644 666
Q ss_pred HHHHHHHHHHHcCCcEEEEeC---CHHHHHHHhcccCCcEEEee-ccccccccccccccccccCchhHHHHhhccccccc
Q 015424 276 DIRYMTKICKLLGLTALVEVH---DEREMDRVLGIEGIELIGIN-NRNLAISIFSYRTETFEVDNSNTKKLLEGERGEII 351 (407)
Q Consensus 276 ~L~~Li~~a~~LGL~aLVEVh---t~eElerAl~l~Ga~iIGIN-nRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i 351 (407)
.++..++.+++.|+.+.|.+- +.++++..+.+ +...+... ..|- + .....+ .......+.+.
T Consensus 94 ~i~~~~~~~~~~g~~~~V~llts~~~~~l~~~~~~-~~~~~vl~~a~~~---~--~~G~v~--s~~~~~~ir~~------ 159 (216)
T PRK13306 94 TIKAALKVAKEFNGEIQIELYGNWTWEQAQQWRDA-GISQVIYHRSRDA---Q--LAGVAW--GEKDLNKVKKL------ 159 (216)
T ss_pred HHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHcC-Chhhhhhhhhhhh---h--hcCCCC--CHHHHHHHHHH------
Confidence 799999988888887766664 55666554553 33322211 1111 0 000111 11222223221
Q ss_pred ccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 352 RQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 352 ~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
...+.-+..-||| +++.+..+.+.|+|.++||.+|++++||.++++++..
T Consensus 160 ~~~~~~i~V~gGI-~~~~~~~~~~~~ad~~VvGr~I~~a~dp~~a~~~i~~ 209 (216)
T PRK13306 160 SDMGFKVSVTGGL-VVEDLKLFKGIPVKTFIAGRAIRGAADPAAAARAFKD 209 (216)
T ss_pred hcCCCeEEEcCCC-CHhhHHHHhcCCCCEEEECCcccCCCCHHHHHHHHHH
Confidence 1134436667999 7777777888999999999999999999999988864
No 139
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=97.99 E-value=0.00061 Score=68.60 Aligned_cols=148 Identities=14% Similarity=0.122 Sum_probs=99.4
Q ss_pred CcEEeccccCCHHHHHHH----HHcCCCEEEEeccC--------------C-CHHHHHHHHHHHHH-cCCcEEEEe----
Q 015424 240 CPLLCKEFIVDAWQIYYA----RTKGADAVLLIAAV--------------L-PDLDIRYMTKICKL-LGLTALVEV---- 295 (407)
Q Consensus 240 lPVL~KDFIid~~QI~eA----r~~GADaVLLiaai--------------L-~~~~L~~Li~~a~~-LGL~aLVEV---- 295 (407)
.|+...=|.-++.++.+| ...|+|.|=|.... + +++.+.++++..++ .+..+.|-+
T Consensus 65 ~~~~vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~ 144 (321)
T PRK10415 65 GIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGW 144 (321)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccc
Confidence 455454456666665442 34688888887662 2 24456666666543 444444433
Q ss_pred ----CCHHHHHH-HhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHH
Q 015424 296 ----HDEREMDR-VLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDI 370 (407)
Q Consensus 296 ----ht~eEler-Al~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~ 370 (407)
.+..++-+ +.+. |++.|-+..|...+ .| .-..|++...++.+. .+++||+-|||.|++|+
T Consensus 145 ~~~~~~~~~~a~~le~~-G~d~i~vh~rt~~~---~~---~G~a~~~~i~~ik~~--------~~iPVI~nGgI~s~~da 209 (321)
T PRK10415 145 APEHRNCVEIAQLAEDC-GIQALTIHGRTRAC---LF---NGEAEYDSIRAVKQK--------VSIPVIANGDITDPLKA 209 (321)
T ss_pred cCCcchHHHHHHHHHHh-CCCEEEEecCcccc---cc---CCCcChHHHHHHHHh--------cCCcEEEeCCCCCHHHH
Confidence 13334443 3454 99999998886411 11 123566666666654 35899999999999999
Q ss_pred HHHHH-cCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 371 AYVQE-AGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 371 ~~l~~-~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
..+.+ .|+|+|.||.+++..+.....+++++.
T Consensus 210 ~~~l~~~gadgVmiGR~~l~nP~if~~~~~~~~ 242 (321)
T PRK10415 210 RAVLDYTGADALMIGRAAQGRPWIFREIQHYLD 242 (321)
T ss_pred HHHHhccCCCEEEEChHhhcCChHHHHHHHHHh
Confidence 99997 699999999999999999888887764
No 140
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=97.97 E-value=0.00069 Score=63.27 Aligned_cols=176 Identities=21% Similarity=0.181 Sum_probs=106.0
Q ss_pred HHHHHHHHcCCcEEEEEecCCcCC-CCHHHHHHHHhcC----CCCcEEeccccCCHHHHH-HHHHcCCCEEEEeccCCCH
Q 015424 201 EIARSYEKGGAACLSILTDEKYFK-GSFENLEAVRSAG----VKCPLLCKEFIVDAWQIY-YARTKGADAVLLIAAVLPD 274 (407)
Q Consensus 201 ~iA~ay~~~GA~aISVLTd~~~F~-Gs~edL~~Vr~a~----v~lPVL~KDFIid~~QI~-eAr~~GADaVLLiaaiL~~ 274 (407)
+.++...++||++|-+...+..-. =+++..+.+++.. ..++|+..|- ...|. .+...|+|.|.|...- +.
T Consensus 10 ed~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~~---~~~i~~ia~~~~~d~Vqlhg~e-~~ 85 (203)
T cd00405 10 EDALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALPPFVKRVGVFVNED---LEEILEIAEELGLDVVQLHGDE-SP 85 (203)
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCCCCCcEEEEEeCCC---HHHHHHHHHhcCCCEEEECCCC-CH
Confidence 456666788999999985432100 1344455666531 1245544442 23333 3678899999997642 32
Q ss_pred HHHHHHHHHHH-HcCCcEE--EEeCCHHHHH--HHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhccccc
Q 015424 275 LDIRYMTKICK-LLGLTAL--VEVHDEREMD--RVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGE 349 (407)
Q Consensus 275 ~~L~~Li~~a~-~LGL~aL--VEVht~eEle--rAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~ 349 (407)
+.+ +..+ .+|...| +-+++..+++ ++... +++++.+....- ..+|-+ ....|++...++.
T Consensus 86 ~~~----~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~-~aD~il~dt~~~--~~~Gg~--g~~~~~~~l~~~~------ 150 (203)
T cd00405 86 EYC----AQLRARLGLPVIKAIRVKDEEDLEKAAAYAG-EVDAILLDSKSG--GGGGGT--GKTFDWSLLRGLA------ 150 (203)
T ss_pred HHH----HHHHhhcCCcEEEEEecCChhhHHHhhhccc-cCCEEEEcCCCC--CCCCCC--cceEChHHhhccc------
Confidence 222 2233 3588888 8888776665 34443 788886643211 000001 1234554433322
Q ss_pred ccccCCceEEEeeCCCCHHHHHHHHHcC-CCEEEEcccccCC---CChHHHHHhhh
Q 015424 350 IIRQKNIIVVGESGLFTPDDIAYVQEAG-VKAVLVGESIVKQ---DDPGKGITGLF 401 (407)
Q Consensus 350 ~i~~~~v~vVAESGI~t~eD~~~l~~~G-adaVLVGeaLmk~---~dp~~~i~~L~ 401 (407)
..+++++.||| |++++..+.+.| +++|-|++++... .|+ .++++|+
T Consensus 151 ----~~~PvilaGGI-~~~Nv~~~i~~~~~~gvdv~S~ie~~pg~kd~-~ki~~~~ 200 (203)
T cd00405 151 ----SRKPVILAGGL-TPDNVAEAIRLVRPYGVDVSSGVETSPGIKDP-EKIRAFI 200 (203)
T ss_pred ----cCCCEEEECCC-ChHHHHHHHHhcCCCEEEcCCcccCCCCCcCH-HHHHHHH
Confidence 24689999999 999999999999 9999999999977 332 3455554
No 141
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=97.94 E-value=0.00033 Score=67.43 Aligned_cols=174 Identities=18% Similarity=0.202 Sum_probs=120.5
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEec--------
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA-------- 269 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLia-------- 269 (407)
....++++.+.|||+-|=|-. +++-++.+|+. +++||=.-- ++|.+.+.|..+|||.|=++-
T Consensus 28 ~V~~i~~AA~~ggAt~vDIAa-------dp~LV~~~~~~-s~lPICVSa--Vep~~f~~aV~AGAdliEIGNfDsFY~qG 97 (242)
T PF04481_consen 28 SVAAIVKAAEIGGATFVDIAA-------DPELVKLAKSL-SNLPICVSA--VEPELFVAAVKAGADLIEIGNFDSFYAQG 97 (242)
T ss_pred HHHHHHHHHHccCCceEEecC-------CHHHHHHHHHh-CCCCeEeec--CCHHHHHHHHHhCCCEEEecchHHHHhcC
Confidence 345678899999999999975 46688888886 899998776 899999999999999998763
Q ss_pred cCCCHHHHHHHHHHHHHc--CCcE------EEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccC------
Q 015424 270 AVLPDLDIRYMTKICKLL--GLTA------LVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVD------ 335 (407)
Q Consensus 270 aiL~~~~L~~Li~~a~~L--GL~a------LVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vD------ 335 (407)
..++.++.-+|.+..++| ...- +...+...+|-.-+...|+|+|-.. .++++......
T Consensus 98 r~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQTE--------Ggtss~p~~~g~lglIe 169 (242)
T PF04481_consen 98 RRFSAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQTE--------GGTSSKPTSPGILGLIE 169 (242)
T ss_pred CeecHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEEEcC--------CCCCCCCCCcchHHHHH
Confidence 355777888888888876 2222 2233333333333322377776553 34443333322
Q ss_pred -----chhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHH
Q 015424 336 -----NSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGIT 398 (407)
Q Consensus 336 -----l~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~ 398 (407)
+..+..+.+. -++++++.|||+..- +-....+||.||=||+++-+-.|...-+.
T Consensus 170 kaapTLAaay~ISr~--------v~iPVlcASGlS~vT-~PmAiaaGAsGVGVGSavn~Ln~~~aMva 228 (242)
T PF04481_consen 170 KAAPTLAAAYAISRA--------VSIPVLCASGLSAVT-APMAIAAGASGVGVGSAVNRLNDEVAMVA 228 (242)
T ss_pred HHhHHHHHHHHHHhc--------cCCceEeccCcchhh-HHHHHHcCCcccchhHHhhhcccHHHHHH
Confidence 2223333322 368999999996554 77778899999999999999998765443
No 142
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=97.93 E-value=0.00022 Score=69.12 Aligned_cols=135 Identities=19% Similarity=0.181 Sum_probs=92.8
Q ss_pred CCcEEeccccCCHHHHH---HHHHcCCCEEEEeccC--------------C-CHHHHHHHHHHHHHcCCcEEEEeC----
Q 015424 239 KCPLLCKEFIVDAWQIY---YARTKGADAVLLIAAV--------------L-PDLDIRYMTKICKLLGLTALVEVH---- 296 (407)
Q Consensus 239 ~lPVL~KDFIid~~QI~---eAr~~GADaVLLiaai--------------L-~~~~L~~Li~~a~~LGL~aLVEVh---- 296 (407)
..|+...=...++.... +-..-++|+|=|.+.. | +++.+.++++.+++.+..+.|-++
T Consensus 67 ~~~vivnv~~~~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~~ 146 (231)
T TIGR00736 67 RALVSVNVRFVDLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNCI 146 (231)
T ss_pred cCCEEEEEecCCHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence 44666433334454333 3345689999987653 3 556788888888877888777665
Q ss_pred --CHHHH-HHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHH
Q 015424 297 --DEREM-DRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYV 373 (407)
Q Consensus 297 --t~eEl-erAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l 373 (407)
+..++ +.+.+ .|++.|.|..+.- .....|++...++.+. + +++++|+-|||.|.+|+.++
T Consensus 147 ~~~~~~~a~~l~~-aGad~i~Vd~~~~---------g~~~a~~~~I~~i~~~-----~--~~ipIIgNGgI~s~eda~e~ 209 (231)
T TIGR00736 147 PLDELIDALNLVD-DGFDGIHVDAMYP---------GKPYADMDLLKILSEE-----F--NDKIIIGNNSIDDIESAKEM 209 (231)
T ss_pred cchHHHHHHHHHH-cCCCEEEEeeCCC---------CCchhhHHHHHHHHHh-----c--CCCcEEEECCcCCHHHHHHH
Confidence 22244 34445 4999999953321 1122577776666554 1 24789999999999999999
Q ss_pred HHcCCCEEEEcccccCC
Q 015424 374 QEAGVKAVLVGESIVKQ 390 (407)
Q Consensus 374 ~~~GadaVLVGeaLmk~ 390 (407)
+++|||+|-||++++++
T Consensus 210 l~~GAd~VmvgR~~l~~ 226 (231)
T TIGR00736 210 LKAGADFVSVARAILKG 226 (231)
T ss_pred HHhCCCeEEEcHhhccC
Confidence 99999999999999976
No 143
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=97.93 E-value=0.00013 Score=74.38 Aligned_cols=165 Identities=21% Similarity=0.246 Sum_probs=99.0
Q ss_pred CceEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEEecC----------CcCCCCHHHHHHHHhcCCCCcEEec
Q 015424 176 LPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDE----------KYFKGSFENLEAVRSAGVKCPLLCK 245 (407)
Q Consensus 176 ~~~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVLTd~----------~~F~Gs~edL~~Vr~a~v~lPVL~K 245 (407)
...||+.+=-..+. ..++..+.++.+..+|.++.+...+ .-|.+-++.++.+++. +++||+.|
T Consensus 120 ~~p~~aNl~~~~~~------~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~-~~vPVivK 192 (352)
T PRK05437 120 DGLLFANLGAVQLY------GYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSA-LPVPVIVK 192 (352)
T ss_pred CceEEeecCccccC------CCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHh-hCCCEEEE
Confidence 34688887544332 3478888888887788887776421 1244445788999986 89999998
Q ss_pred c--ccCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccc
Q 015424 246 E--FIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAIS 323 (407)
Q Consensus 246 D--FIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~ 323 (407)
. +..+...+.....+|+|+|.+... ...... -+|.|...+. +. . -..
T Consensus 193 ~~g~g~s~~~a~~l~~~Gvd~I~Vsg~--GGt~~~-------------~ie~~R~~~~----~~-~---~~~-------- 241 (352)
T PRK05437 193 EVGFGISKETAKRLADAGVKAIDVAGA--GGTSWA-------------AIENYRARDD----RL-A---SYF-------- 241 (352)
T ss_pred eCCCCCcHHHHHHHHHcCCCEEEECCC--CCCCcc-------------chhhhhhhcc----cc-c---ccc--------
Confidence 5 445666666677789999888432 110000 0010000000 00 0 000
Q ss_pred cccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015424 324 IFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 390 (407)
Q Consensus 324 ~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~ 390 (407)
.++. +.+...|... ... . .++++|+.|||.+..|+.++..+|||+|-||+++++.
T Consensus 242 ------~~~g--~pt~~~l~~i-~~~-~--~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~ 296 (352)
T PRK05437 242 ------ADWG--IPTAQSLLEA-RSL-L--PDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKA 296 (352)
T ss_pred ------cccc--CCHHHHHHHH-HHh-c--CCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHH
Confidence 1111 1112222111 100 1 2579999999999999999999999999999999876
No 144
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.90 E-value=8.8e-05 Score=74.00 Aligned_cols=93 Identities=17% Similarity=0.215 Sum_probs=69.3
Q ss_pred HHHHHHHHH-c--CCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccC
Q 015424 278 RYMTKICKL-L--GLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQK 354 (407)
Q Consensus 278 ~~Li~~a~~-L--GL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~ 354 (407)
.+-++.+++ . +..+-|||||.+|+..|+++ |+|+|+.-|-++ +...+.++.++. . ..
T Consensus 183 ~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~-GaD~I~LDn~~~----------------e~l~~av~~~~~--~-~~ 242 (288)
T PRK07428 183 GEAITRIRQRIPYPLTIEVETETLEQVQEALEY-GADIIMLDNMPV----------------DLMQQAVQLIRQ--Q-NP 242 (288)
T ss_pred HHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHc-CCCEEEECCCCH----------------HHHHHHHHHHHh--c-CC
Confidence 344444554 3 46789999999999999997 999999965544 233443332111 0 14
Q ss_pred CceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015424 355 NIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 391 (407)
Q Consensus 355 ~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 391 (407)
.+++.+.||| |++++..+...|+|.+.+|..+++.+
T Consensus 243 ~i~leAsGGI-t~~ni~~ya~tGvD~Isvgsl~~sa~ 278 (288)
T PRK07428 243 RVKIEASGNI-TLETIRAVAETGVDYISSSAPITRSP 278 (288)
T ss_pred CeEEEEECCC-CHHHHHHHHHcCCCEEEEchhhhCCC
Confidence 6789999999 89999999999999999999887554
No 145
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=97.89 E-value=0.00048 Score=65.95 Aligned_cols=163 Identities=20% Similarity=0.266 Sum_probs=118.1
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCCHHHH
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDI 277 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L 277 (407)
+...+|++..++|..+|=|- .. -.+-.+-++.+++. ..=-++-=.-++++.|+.+|.++||+-|. +--++
T Consensus 26 ~a~~~a~Ali~gGi~~IEIT-l~--sp~a~e~I~~l~~~-~p~~lIGAGTVL~~~q~~~a~~aGa~fiV--sP~~~---- 95 (211)
T COG0800 26 EALPLAKALIEGGIPAIEIT-LR--TPAALEAIRALAKE-FPEALIGAGTVLNPEQARQAIAAGAQFIV--SPGLN---- 95 (211)
T ss_pred HHHHHHHHHHHcCCCeEEEe-cC--CCCHHHHHHHHHHh-CcccEEccccccCHHHHHHHHHcCCCEEE--CCCCC----
Confidence 67789999999999999883 22 12345667777664 32113345668999999999999999754 33444
Q ss_pred HHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCce
Q 015424 278 RYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNII 357 (407)
Q Consensus 278 ~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~ 357 (407)
.++++.|...||..+=-|.|..|+..|+++ |++.+=+ |.-+.-.-...++.+.+ +..++.
T Consensus 96 ~ev~~~a~~~~ip~~PG~~TptEi~~Ale~-G~~~lK~----------------FPa~~~Gg~~~~ka~~g---P~~~v~ 155 (211)
T COG0800 96 PEVAKAANRYGIPYIPGVATPTEIMAALEL-GASALKF----------------FPAEVVGGPAMLKALAG---PFPQVR 155 (211)
T ss_pred HHHHHHHHhCCCcccCCCCCHHHHHHHHHc-Chhheee----------------cCccccCcHHHHHHHcC---CCCCCe
Confidence 347899999999999999999999999998 8876533 22221111111221111 235689
Q ss_pred EEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015424 358 VVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 391 (407)
Q Consensus 358 vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 391 (407)
+..-||| +++++.....+|+.+|-+|+.|+++.
T Consensus 156 ~~pTGGV-s~~N~~~yla~gv~avG~Gs~l~~~~ 188 (211)
T COG0800 156 FCPTGGV-SLDNAADYLAAGVVAVGLGSWLVPKD 188 (211)
T ss_pred EeecCCC-CHHHHHHHHhCCceEEecCccccChh
Confidence 9999999 78899999999999999999999764
No 146
>PRK06801 hypothetical protein; Provisional
Probab=97.88 E-value=0.0017 Score=64.83 Aligned_cols=140 Identities=14% Similarity=0.200 Sum_probs=101.3
Q ss_pred CCCcEE-eccccCCHHHHHHHHHcCCCEEEEeccCCCHHH----HHHHHHHHHHcCCcEEEEe-----------------
Q 015424 238 VKCPLL-CKEFIVDAWQIYYARTKGADAVLLIAAVLPDLD----IRYMTKICKLLGLTALVEV----------------- 295 (407)
Q Consensus 238 v~lPVL-~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~----L~~Li~~a~~LGL~aLVEV----------------- 295 (407)
.++||- .-|-..+...+.+|...|.+.|.+..+-++.++ .+++.++|+.+|+++=.|+
T Consensus 73 ~~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~ 152 (286)
T PRK06801 73 HDIPVVLNLDHGLHFEAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADS 152 (286)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCccc
Confidence 478874 667777788899999999999999999998533 4557777888887652221
Q ss_pred --C-CHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeC--CCCHHHH
Q 015424 296 --H-DEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESG--LFTPDDI 370 (407)
Q Consensus 296 --h-t~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESG--I~t~eD~ 370 (407)
+ +.+|+.+..+..|+|.+++.--+- -+..+.....|++...++.+.+ ++++|.-|| | +.+++
T Consensus 153 ~~~T~pe~a~~f~~~tgvD~LAvaiGt~----Hg~y~~~~~l~~e~l~~i~~~~--------~~PLVlHGGSgi-~~e~~ 219 (286)
T PRK06801 153 AKFTDPQLARDFVDRTGIDALAVAIGNA----HGKYKGEPKLDFARLAAIHQQT--------GLPLVLHGGSGI-SDADF 219 (286)
T ss_pred ccCCCHHHHHHHHHHHCcCEEEeccCCC----CCCCCCCCCCCHHHHHHHHHhc--------CCCEEEECCCCC-CHHHH
Confidence 2 448888888434999999943332 2211223457888888876541 345566655 9 68999
Q ss_pred HHHHHcCCCEEEEcccccCC
Q 015424 371 AYVQEAGVKAVLVGESIVKQ 390 (407)
Q Consensus 371 ~~l~~~GadaVLVGeaLmk~ 390 (407)
.++.++|++.|=|++.|...
T Consensus 220 ~~~i~~Gi~KINv~T~~~~a 239 (286)
T PRK06801 220 RRAIELGIHKINFYTGMSQA 239 (286)
T ss_pred HHHHHcCCcEEEehhHHHHH
Confidence 99999999999999998764
No 147
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=97.86 E-value=0.00062 Score=69.55 Aligned_cols=185 Identities=17% Similarity=0.138 Sum_probs=112.3
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHH-HHhcCCCCcEEec----ccc-C-CH-H-----HHHHHHHcC
Q 015424 195 EDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEA-VRSAGVKCPLLCK----EFI-V-DA-W-----QIYYARTKG 261 (407)
Q Consensus 195 ~~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~-Vr~a~v~lPVL~K----DFI-i-d~-~-----QI~eAr~~G 261 (407)
...||..+-+...++|++|+.+- .--++. .+....++|++.| .-+ - ++ . .|.+|..+|
T Consensus 89 gl~dp~~~i~~a~~~g~dAv~~~---------~G~l~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLG 159 (348)
T PRK09250 89 LYFDPENIVKLAIEAGCNAVAST---------LGVLEAVARKYAHKIPFILKLNHNELLSYPNTYDQALTASVEDALRLG 159 (348)
T ss_pred cccCHHHHHHHHHhcCCCEEEeC---------HHHHHhccccccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCC
Confidence 46799999999999999998872 333433 2222236787643 111 1 11 1 478999999
Q ss_pred CCEEEEeccCCCH------HHHHHHHHHHHHcCCcEEEEeC-------CHHH-----------HHHHhcccCCcEEEeec
Q 015424 262 ADAVLLIAAVLPD------LDIRYMTKICKLLGLTALVEVH-------DERE-----------MDRVLGIEGIELIGINN 317 (407)
Q Consensus 262 ADaVLLiaaiL~~------~~L~~Li~~a~~LGL~aLVEVh-------t~eE-----------lerAl~l~Ga~iIGINn 317 (407)
||+|-.-.-.-++ +++.++.+.|+++||-+++.+. +..+ ...+.++ |||||=++-
T Consensus 160 AdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaEL-GADIVKv~y 238 (348)
T PRK09250 160 AVAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATI-GADIIKQKL 238 (348)
T ss_pred CCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHH-cCCEEEecC
Confidence 9999886655543 2455566778889999988443 3221 3456677 999999964
Q ss_pred cccccc----c------ccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCC-H----HHHHHH---HHcCCC
Q 015424 318 RNLAIS----I------FSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFT-P----DDIAYV---QEAGVK 379 (407)
Q Consensus 318 RdL~~~----~------~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t-~----eD~~~l---~~~Gad 379 (407)
..=... + +-|.+.+.+...+......... + ...++||..||=++ . +.++.. +++|+.
T Consensus 239 p~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac----~-ag~vpVviAGG~k~~~~e~L~~v~~a~~~i~aGa~ 313 (348)
T PRK09250 239 PTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANC----Y-MGRRGLINSGGASKGEDDLLDAVRTAVINKRAGGM 313 (348)
T ss_pred CCChhhHHHhhcccccccccccccccchHHHHHHHHHhh----c-cCCceEEEeCCCCCCHHHHHHHHHHHHHhhhcCCc
Confidence 310000 0 0011111112222222222210 0 01467888888874 2 235566 778999
Q ss_pred EEEEcccccCCCChH
Q 015424 380 AVLVGESIVKQDDPG 394 (407)
Q Consensus 380 aVLVGeaLmk~~dp~ 394 (407)
|+.+|.-+...+++.
T Consensus 314 Gv~iGRNIfQ~~~~e 328 (348)
T PRK09250 314 GLIIGRKAFQRPMAE 328 (348)
T ss_pred chhhchhhhcCCcHH
Confidence 999999999999976
No 148
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=97.85 E-value=0.00075 Score=63.40 Aligned_cols=153 Identities=12% Similarity=0.096 Sum_probs=95.6
Q ss_pred CCHHHHHHHHhcCCCCcEEec--cccCCH-HHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEE--eCC--
Q 015424 225 GSFENLEAVRSAGVKCPLLCK--EFIVDA-WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVE--VHD-- 297 (407)
Q Consensus 225 Gs~edL~~Vr~a~v~lPVL~K--DFIid~-~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVE--Vht-- 297 (407)
-+++.++.+|+. ..+|+=.| |...++ +++..+..+|||+|.+-+.. ....+..+++.+++.|+.+++- ..+
T Consensus 42 ~G~~~v~~ir~~-~~i~~D~k~~di~~~~~~~~~~~~~~gad~vtvh~e~-g~~~l~~~i~~~~~~g~~~~v~~~~~~~~ 119 (215)
T PRK13813 42 SGLGIIEELKRY-APVIADLKVADIPNTNRLICEAVFEAGAWGIIVHGFT-GRDSLKAVVEAAAESGGKVFVVVEMSHPG 119 (215)
T ss_pred hCHHHHHHHHhc-CCEEEEeeccccHHHHHHHHHHHHhCCCCEEEEcCcC-CHHHHHHHHHHHHhcCCeEEEEEeCCCCC
Confidence 457889999986 54543233 333233 34566788999998886653 3556889999999999999662 222
Q ss_pred -----HHHHHHHhcc---cCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCH-H
Q 015424 298 -----EREMDRVLGI---EGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTP-D 368 (407)
Q Consensus 298 -----~eElerAl~l---~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~-e 368 (407)
.+.++.++.+ .|++..-+ ....++...++.+.. +.++.+ .-+||... .
T Consensus 120 ~~~~~~~~~~~v~~m~~e~G~~g~~~----------------~~~~~~~i~~l~~~~------~~~~~i-vdgGI~~~g~ 176 (215)
T PRK13813 120 ALEFIQPHADKLAKLAQEAGAFGVVA----------------PATRPERVRYIRSRL------GDELKI-ISPGIGAQGG 176 (215)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEE----------------CCCcchhHHHHHHhc------CCCcEE-EeCCcCCCCC
Confidence 1134443332 13321111 011123333443331 223333 66899653 2
Q ss_pred HHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 369 DIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 369 D~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
++..+.++|+|.+++|++|++.+||.+.++.|..
T Consensus 177 ~~~~~~~aGad~iV~Gr~I~~~~d~~~~~~~l~~ 210 (215)
T PRK13813 177 KAADAIKAGADYVIVGRSIYNAADPREAAKAINE 210 (215)
T ss_pred CHHHHHHcCCCEEEECcccCCCCCHHHHHHHHHH
Confidence 5888899999999999999999999999988753
No 149
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=97.85 E-value=0.00048 Score=70.51 Aligned_cols=170 Identities=20% Similarity=0.277 Sum_probs=108.2
Q ss_pred HHHHHHHHHcCCc-EEEEEecCCcCCCCHHHHHHHHhcCCCCcEE-----eccccCCHHHHHHHHHcCCCEEEEeccC--
Q 015424 200 VEIARSYEKGGAA-CLSILTDEKYFKGSFENLEAVRSAGVKCPLL-----CKEFIVDAWQIYYARTKGADAVLLIAAV-- 271 (407)
Q Consensus 200 ~~iA~ay~~~GA~-aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL-----~KDFIid~~QI~eAr~~GADaVLLiaai-- 271 (407)
..+|++..+.|.. ++|-. -.-++|++.... .+-|.. .||.-+....|..|.++|+.++.|.+..
T Consensus 92 ~a~AraA~~~gi~~~lSt~-----s~~s~Eei~~~~---~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~ 163 (351)
T cd04737 92 VATARGMAEVGSLFSISTY-----SNTSLEEIAKAS---NGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATV 163 (351)
T ss_pred HHHHHHHHHcCCCEEecCC-----CCCCHHHHHHhc---CCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 6678888888843 33432 334667665432 122332 3665566667888889999998886622
Q ss_pred -------------CC----------------------------HHHHHHHHHHHHHcCCcEEEE-eCCHHHHHHHhcccC
Q 015424 272 -------------LP----------------------------DLDIRYMTKICKLLGLTALVE-VHDEREMDRVLGIEG 309 (407)
Q Consensus 272 -------------L~----------------------------~~~L~~Li~~a~~LGL~aLVE-Vht~eElerAl~l~G 309 (407)
++ .-.++.+-...+..++.+++- |.+.++++++.++ |
T Consensus 164 ~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~PvivKgv~~~~dA~~a~~~-G 242 (351)
T cd04737 164 GGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAAKQKLSPADIEFIAKISGLPVIVKGIQSPEDADVAINA-G 242 (351)
T ss_pred CCcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhhccCCCCHHHHHHHHHHhCCcEEEecCCCHHHHHHHHHc-C
Confidence 00 001122223333457777665 8899999999997 9
Q ss_pred CcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccC
Q 015424 310 IELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK 389 (407)
Q Consensus 310 a~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk 389 (407)
++.|-+-|-.- -.-..-...++...++.+. + ...+.+|+-|||.+..|+.++..+||++|.||..++.
T Consensus 243 ~d~I~vsnhGG------r~ld~~~~~~~~l~~i~~a-----~-~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~ 310 (351)
T cd04737 243 ADGIWVSNHGG------RQLDGGPASFDSLPEIAEA-----V-NHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLY 310 (351)
T ss_pred CCEEEEeCCCC------ccCCCCchHHHHHHHHHHH-----h-CCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 99888865321 0001111223333344332 1 2358999999999999999999999999999999987
Q ss_pred C
Q 015424 390 Q 390 (407)
Q Consensus 390 ~ 390 (407)
+
T Consensus 311 ~ 311 (351)
T cd04737 311 G 311 (351)
T ss_pred H
Confidence 5
No 150
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=97.85 E-value=0.00081 Score=65.92 Aligned_cols=162 Identities=19% Similarity=0.207 Sum_probs=108.5
Q ss_pred HHHHHHHHcCCcEEEEEecCCcCCC---CHHHHHHHHhcCCCCcEE------eccccCCHH-------HHHHHHHcCCCE
Q 015424 201 EIARSYEKGGAACLSILTDEKYFKG---SFENLEAVRSAGVKCPLL------CKEFIVDAW-------QIYYARTKGADA 264 (407)
Q Consensus 201 ~iA~ay~~~GA~aISVLTd~~~F~G---s~edL~~Vr~a~v~lPVL------~KDFIid~~-------QI~eAr~~GADa 264 (407)
+-|...+++||+.|=.+.. -.-+| |+.-++.+++. +++||. .+||..++. +|..++.+|||+
T Consensus 12 ~~a~~A~~~GAdRiELc~~-L~~GGlTPS~g~i~~~~~~-~~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~~GadG 89 (248)
T PRK11572 12 ECALTAQQAGADRIELCAA-PKEGGLTPSLGVLKSVRER-VTIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVRELGFPG 89 (248)
T ss_pred HHHHHHHHcCCCEEEEccC-cCCCCcCCCHHHHHHHHHh-cCCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCE
Confidence 4567788899999988754 34555 88999999986 889986 269998887 456788999999
Q ss_pred EEEecc----CCCHHHHHHHHHHHHHcCCcE---EEEeCCHHH-HHHHhcccCCcEEEeeccccccccccccccccccCc
Q 015424 265 VLLIAA----VLPDLDIRYMTKICKLLGLTA---LVEVHDERE-MDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDN 336 (407)
Q Consensus 265 VLLiaa----iL~~~~L~~Li~~a~~LGL~a---LVEVht~eE-lerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl 336 (407)
|.+++- -++.+.++.|++.+..+.++. +=++.|..+ ++...++ |++ |-| |..+- .+..-.+
T Consensus 90 vV~G~L~~dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~l-G~~------rIL--TSGg~--~~a~~g~ 158 (248)
T PRK11572 90 LVTGVLDVDGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADL-GVA------RIL--TSGQQ--QDAEQGL 158 (248)
T ss_pred EEEeeECCCCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHc-CCC------EEE--CCCCC--CCHHHHH
Confidence 999763 345567888998886443332 223345554 4555565 653 333 11111 2222334
Q ss_pred hhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEE
Q 015424 337 SNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLV 383 (407)
Q Consensus 337 ~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLV 383 (407)
+...+|.+. ..+..+++.||| +++++..+...|+..|=.
T Consensus 159 ~~L~~lv~~-------a~~~~Im~GgGV-~~~Nv~~l~~tG~~~~H~ 197 (248)
T PRK11572 159 SLIMELIAA-------SDGPIIMAGAGV-RLSNLHKFLDAGVREVHS 197 (248)
T ss_pred HHHHHHHHh-------cCCCEEEeCCCC-CHHHHHHHHHcCCCEEee
Confidence 555556553 134458999999 888999998999987753
No 151
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=97.85 E-value=8.3e-05 Score=76.31 Aligned_cols=101 Identities=27% Similarity=0.310 Sum_probs=75.2
Q ss_pred CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHh
Q 015424 226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVL 305 (407)
Q Consensus 226 s~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl 305 (407)
+.++|+.+|+. .+.||+.|+ |+++.+...+..+|||+|.+-- .|
T Consensus 224 ~w~~i~~ir~~-~~~pviiKg-V~~~eda~~a~~~G~d~I~VSn-----------------hG----------------- 267 (361)
T cd04736 224 NWQDLRWLRDL-WPHKLLVKG-IVTAEDAKRCIELGADGVILSN-----------------HG----------------- 267 (361)
T ss_pred CHHHHHHHHHh-CCCCEEEec-CCCHHHHHHHHHCCcCEEEECC-----------------CC-----------------
Confidence 47899999986 899999998 6899999999999999998731 11
Q ss_pred cccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcc
Q 015424 306 GIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGE 385 (407)
Q Consensus 306 ~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGe 385 (407)
| |.+ +.-...++...++.+. -++.+++.|||.+..|+.+...+||++|.||.
T Consensus 268 ---G--------rql---------d~~~~~~~~L~ei~~~--------~~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr 319 (361)
T cd04736 268 ---G--------RQL---------DDAIAPIEALAEIVAA--------TYKPVLIDSGIRRGSDIVKALALGANAVLLGR 319 (361)
T ss_pred ---c--------CCC---------cCCccHHHHHHHHHHH--------hCCeEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 1 111 1100112233333332 24789999999999999999999999999999
Q ss_pred cccCC
Q 015424 386 SIVKQ 390 (407)
Q Consensus 386 aLmk~ 390 (407)
.++..
T Consensus 320 ~~l~~ 324 (361)
T cd04736 320 ATLYG 324 (361)
T ss_pred HHHHH
Confidence 98843
No 152
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=97.80 E-value=7.1e-05 Score=71.55 Aligned_cols=170 Identities=18% Similarity=0.146 Sum_probs=110.4
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcC----CCCcEEe-cccc----------CCHHHHHHHHHcCC
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAG----VKCPLLC-KEFI----------VDAWQIYYARTKGA 262 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~----v~lPVL~-KDFI----------id~~QI~eAr~~GA 262 (407)
++.++++.+.++|+++|.+. +..+..++... +.++++. =++. .+-+++.+|+..||
T Consensus 20 ~~~~~~~~a~~~~~~av~v~---------p~~~~~~~~~~~~~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~GA 90 (236)
T PF01791_consen 20 DIKKLCREAIEYGFDAVCVT---------PGYVKPAAELLAGSGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRLGA 90 (236)
T ss_dssp HHHHHHHHHHHHTSSEEEEE---------GGGHHHHHHHSTTSTSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHhCCCEEEEC---------HHHHHHHHHHhhccccccceEEEeCCCCCccccccccchHHHHHHHHHcCC
Confidence 67888888899999998873 55666665321 2345442 1211 11568889999999
Q ss_pred CEEEEeccC---CCH------HHHHHHHHHHHHcCCcEEEEeC-CHHH-------------HHHHhcccCCcEEEeeccc
Q 015424 263 DAVLLIAAV---LPD------LDIRYMTKICKLLGLTALVEVH-DERE-------------MDRVLGIEGIELIGINNRN 319 (407)
Q Consensus 263 DaVLLiaai---L~~------~~L~~Li~~a~~LGL~aLVEVh-t~eE-------------lerAl~l~Ga~iIGINnRd 319 (407)
|+|-+..-. .+. +++..+.+.|+.+||.+++|.- +.++ .+.+.++ |+|+|=++.-
T Consensus 91 d~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~-GaD~vKt~tg- 168 (236)
T PF01791_consen 91 DEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAEL-GADFVKTSTG- 168 (236)
T ss_dssp SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHT-T-SEEEEE-S-
T ss_pred ceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHh-CCCEEEecCC-
Confidence 999887665 331 4677788888889999999954 2222 1334565 9999888532
Q ss_pred cccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCC------CCHHHHHHHHHcCC--CEEEEcccccC
Q 015424 320 LAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGL------FTPDDIAYVQEAGV--KAVLVGESIVK 389 (407)
Q Consensus 320 L~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI------~t~eD~~~l~~~Ga--daVLVGeaLmk 389 (407)
+. . .+-.-|.....++.+..+ .|..+-+++.||| ++.+++..+.++|+ -|+..|-.|++
T Consensus 169 -----~~-~-~~t~~~~~~~~~~~~~~~----~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i~q 235 (236)
T PF01791_consen 169 -----KP-V-GATPEDVELMRKAVEAAP----VPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNIWQ 235 (236)
T ss_dssp -----SS-S-CSHHHHHHHHHHHHHTHS----STTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHHHT
T ss_pred -----cc-c-cccHHHHHHHHHHHHhcC----CCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHc
Confidence 00 0 111123444455544311 1234569999999 99999999999999 99999977754
No 153
>PLN02535 glycolate oxidase
Probab=97.79 E-value=0.00043 Score=71.17 Aligned_cols=170 Identities=18% Similarity=0.222 Sum_probs=103.1
Q ss_pred HHHHHHHHHHcCC-cEEEEEecCCcCCCCHHHHHHHHhcCCCCcEE-----eccccCCHHHHHHHHHcCCCEEEEeccC-
Q 015424 199 PVEIARSYEKGGA-ACLSILTDEKYFKGSFENLEAVRSAGVKCPLL-----CKEFIVDAWQIYYARTKGADAVLLIAAV- 271 (407)
Q Consensus 199 p~~iA~ay~~~GA-~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL-----~KDFIid~~QI~eAr~~GADaVLLiaai- 271 (407)
-..+|++..+.|. -++|- +...+++++... .+-|.- .||--+...-|..|.++|+.++.|-+..
T Consensus 91 E~a~AraA~~~g~~~~lSt-----~s~~slEeva~~----~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p 161 (364)
T PLN02535 91 EIATARAAAACNTIMVLSF-----MASCTVEEVASS----CNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVP 161 (364)
T ss_pred HHHHHHHHHHcCCCeEecC-----cccCCHHHHHhc----CCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCC
Confidence 3567888888884 33332 334566666432 222332 2554344456777888888888875443
Q ss_pred -CC--------------------------------------------HHHHHHHHHHHHHcCCcE-EEEeCCHHHHHHHh
Q 015424 272 -LP--------------------------------------------DLDIRYMTKICKLLGLTA-LVEVHDEREMDRVL 305 (407)
Q Consensus 272 -L~--------------------------------------------~~~L~~Li~~a~~LGL~a-LVEVht~eElerAl 305 (407)
+. ...++.+-......++.+ +-+|-+.+++.++.
T Consensus 162 ~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~PvivKgV~~~~dA~~a~ 241 (364)
T PLN02535 162 RLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRSITNLPILIKGVLTREDAIKAV 241 (364)
T ss_pred CCCCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHHHhccCCCCCHHHHHHHHhccCCCEEEecCCCHHHHHHHH
Confidence 00 001111111222235554 55689999999999
Q ss_pred cccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcc
Q 015424 306 GIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGE 385 (407)
Q Consensus 306 ~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGe 385 (407)
++ |++.|-+.|..- ......+.+...|.+ +... + ..++.+|+.|||.+..|+.+...+||++|.||.
T Consensus 242 ~~-GvD~I~vsn~GG---------r~~d~~~~t~~~L~e-v~~a-v-~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr 308 (364)
T PLN02535 242 EV-GVAGIIVSNHGA---------RQLDYSPATISVLEE-VVQA-V-GGRVPVLLDGGVRRGTDVFKALALGAQAVLVGR 308 (364)
T ss_pred hc-CCCEEEEeCCCc---------CCCCCChHHHHHHHH-HHHH-H-hcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 98 999998876532 111111222222222 1110 1 235789999999999999999999999999999
Q ss_pred cccCC
Q 015424 386 SIVKQ 390 (407)
Q Consensus 386 aLmk~ 390 (407)
.++.+
T Consensus 309 ~~l~~ 313 (364)
T PLN02535 309 PVIYG 313 (364)
T ss_pred HHHhh
Confidence 99875
No 154
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=97.78 E-value=0.00044 Score=65.92 Aligned_cols=153 Identities=16% Similarity=0.226 Sum_probs=100.2
Q ss_pred CHHHHHHHHhcCCCCcEEeccc----------cCCHHHHHHHHHcCCCEEEEecc--CCCHHHHHHHHHHHHHcCCcEEE
Q 015424 226 SFENLEAVRSAGVKCPLLCKEF----------IVDAWQIYYARTKGADAVLLIAA--VLPDLDIRYMTKICKLLGLTALV 293 (407)
Q Consensus 226 s~edL~~Vr~a~v~lPVL~KDF----------Iid~~QI~eAr~~GADaVLLiaa--iL~~~~L~~Li~~a~~LGL~aLV 293 (407)
.+-+|..+++. +.++|-..|. =+.+.+ .+++|++.|+++++ .+...++..-++.|.+.||.+++
T Consensus 40 p~~~L~~~~~~-~~i~vgAQn~~~~~~Ga~TGevS~~m---Lkd~G~~~viiGHSERRf~Etdi~~Kv~~a~~~gl~~Iv 115 (205)
T TIGR00419 40 PFVDLPMIKRE-VEIPVYAQHVDAVLSGAHTGEISAEM---LKDIGAKGTLINHSERRMKLADIEKKIARLKELGLTSVV 115 (205)
T ss_pred CHHHHHHHHHh-cCceEEecccccccCCCccCcCCHHH---HHHcCCCEEEECcccCCCCccHHHHHHHHHHHCCCEEEE
Confidence 36677777764 4566655541 133334 46779999999998 33334477777889999999999
Q ss_pred EeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHH
Q 015424 294 EVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYV 373 (407)
Q Consensus 294 EVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l 373 (407)
+|.+..+-.....+ ...+|.....-.||||..-++. +.+.....++. .... ..++.++..|+|+.-++...+
T Consensus 116 Ci~~v~~q~~~~~~-~~~vIAYEPvWAIGtG~~as~~----~~~~v~~~ir~--~~~~-~~~~~IlYGGSV~~~N~~~l~ 187 (205)
T TIGR00419 116 CTNNVLTTAAAAAL-EPDVVAVEPPELIGTGIPVSPA----QPEVVHGSVRA--VKEV-NESVRVLCGAGISTGEDAELA 187 (205)
T ss_pred EEHHHHHHHHhhhh-cCeEEEECCHHHhCCCCCCCHH----HHHHHHHHHHh--hhhh-cCCceEEEeCCCCHHHHHHHh
Confidence 99655544333333 4467888777776655433222 11222222221 1111 246789999999888888888
Q ss_pred HHcCCCEEEEcccccCC
Q 015424 374 QEAGVKAVLVGESIVKQ 390 (407)
Q Consensus 374 ~~~GadaVLVGeaLmk~ 390 (407)
...|+||+|||.+-+++
T Consensus 188 ~~~~iDG~LvG~Asl~a 204 (205)
T TIGR00419 188 AQLGAEGVLLASGSLKA 204 (205)
T ss_pred cCCCCCEEEEeeeeecC
Confidence 89999999999998865
No 155
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=97.77 E-value=0.00076 Score=68.33 Aligned_cols=179 Identities=17% Similarity=0.163 Sum_probs=116.2
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHH----HHHHhcCCCCcE----E-eccccCCHHHHHHHHHcCCCEEEEe
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENL----EAVRSAGVKCPL----L-CKEFIVDAWQIYYARTKGADAVLLI 268 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL----~~Vr~a~v~lPV----L-~KDFIid~~QI~eAr~~GADaVLLi 268 (407)
+..++|.+..++|. +-++.-. ..+++.+ +.+|+..++.|. + ..+--..+.|+....+.+...|.+-
T Consensus 15 ~~~~LaaAVS~AGg--LG~la~~---~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~ 89 (320)
T cd04743 15 DVAEFAVAVAEGGG--LPFIALA---LMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIA 89 (320)
T ss_pred CcHHHHHHHHhCCc--cccCCCC---CCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEc
Confidence 44467777777664 4454321 1245544 344542145562 1 1111123468888889999998874
Q ss_pred ccCCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccc
Q 015424 269 AAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERG 348 (407)
Q Consensus 269 aaiL~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~ 348 (407)
. - .+.+ ++..++.|..++..|.|.+++.++.++ |+|.|-+...+=-+|.. +..||..-......|......
T Consensus 90 ~-G-~P~~----~~~lk~~Gi~v~~~v~s~~~A~~a~~~-GaD~vVaqG~EAGGH~G--~~~t~~L~~~v~~~l~~~~~~ 160 (320)
T cd04743 90 G-G-RPDQ----ARALEAIGISTYLHVPSPGLLKQFLEN-GARKFIFEGRECGGHVG--PRSSFVLWESAIDALLAANGP 160 (320)
T ss_pred C-C-ChHH----HHHHHHCCCEEEEEeCCHHHHHHHHHc-CCCEEEEecCcCcCCCC--CCCchhhHHHHHHHHHHhhcc
Confidence 3 2 2222 367788899999999999999999997 99999998887644443 224454333222223221000
Q ss_pred cccccCCceEEEeeCCCCHHHHHHHHHcCC--------CEEEEcccccCCCC
Q 015424 349 EIIRQKNIIVVGESGLFTPDDIAYVQEAGV--------KAVLVGESIVKQDD 392 (407)
Q Consensus 349 ~~i~~~~v~vVAESGI~t~eD~~~l~~~Ga--------daVLVGeaLmk~~d 392 (407)
....+++||+.|||.+...+..+..+|+ +||.+|+.++-.+.
T Consensus 161 --~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t~E 210 (320)
T cd04743 161 --DKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGTAYLFTEE 210 (320)
T ss_pred --cccCCccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEccHHhcchh
Confidence 0012689999999999999999999998 79999999987544
No 156
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=97.76 E-value=0.00063 Score=70.47 Aligned_cols=177 Identities=19% Similarity=0.170 Sum_probs=103.5
Q ss_pred ceEEEEecc-cCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEEecC-------C---cCCCCHHHHHH----HHhcCCCCc
Q 015424 177 PALIAEVKK-ASPSRGILREDFDPVEIARSYEKGGAACLSILTDE-------K---YFKGSFENLEA----VRSAGVKCP 241 (407)
Q Consensus 177 ~~vIAEvKr-aSPSkG~i~~~~dp~~iA~ay~~~GA~aISVLTd~-------~---~F~Gs~edL~~----Vr~a~v~lP 241 (407)
..||+-+-- .|+ .+-.++|+.+++.||++|=++.-- + .++-+++.+.. ||+. +++|
T Consensus 114 ~pvIaSi~~~~s~--------~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~-~~iP 184 (385)
T PLN02495 114 RILIASIMEEYNK--------DAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAK-ATVP 184 (385)
T ss_pred CcEEEEccCCCCH--------HHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHh-hcCc
Confidence 468887643 232 367788999999999999886421 1 12345667744 4665 7899
Q ss_pred EEecc--ccCCHHHHHH-HHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeecc
Q 015424 242 LLCKE--FIVDAWQIYY-ARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNR 318 (407)
Q Consensus 242 VL~KD--FIid~~QI~e-Ar~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnR 318 (407)
|+.|= .+.+..++.+ +.+.|||+|.++-++.+.. +++ +.+..-. ..+. |-+.
T Consensus 185 v~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~~~~------------~ID----~~t~~p~---~~~~-----~~~~- 239 (385)
T PLN02495 185 VWAKMTPNITDITQPARVALKSGCEGVAAINTIMSVM------------GIN----LDTLRPE---PCVE-----GYST- 239 (385)
T ss_pred eEEEeCCChhhHHHHHHHHHHhCCCEEEEecccCccc------------ccc----cccCccc---cccC-----CCCC-
Confidence 99772 2244555655 6789999999998776421 110 1110000 0000 0000
Q ss_pred ccccccccccccc-cccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCC-CChH
Q 015424 319 NLAISIFSYRTET-FEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ-DDPG 394 (407)
Q Consensus 319 dL~~~~~~~t~~T-f~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~-~dp~ 394 (407)
..+++..- ..+-+....++.+.+.. .+ +.++.+++.|||.|.+|+.....+||++|=|++++|.. +...
T Consensus 240 -----~GGlSG~alkpiAl~~v~~i~~~~~~-~~-~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~~Gp~vi 310 (385)
T PLN02495 240 -----PGGYSSKAVRPIALAKVMAIAKMMKS-EF-PEDRSLSGIGGVETGGDAAEFILLGADTVQVCTGVMMHGYPLV 310 (385)
T ss_pred -----CCCccchhhhHHHHHHHHHHHHHHhh-hc-cCCCcEEEECCCCCHHHHHHHHHhCCCceeEeeeeeecCcHHH
Confidence 00111110 11222223334333211 01 12578999999999999999999999999999999976 5543
No 157
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.72 E-value=0.00023 Score=70.15 Aligned_cols=89 Identities=20% Similarity=0.330 Sum_probs=66.2
Q ss_pred HHHHHHHc---CCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCc
Q 015424 280 MTKICKLL---GLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNI 356 (407)
Q Consensus 280 Li~~a~~L---GL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v 356 (407)
-++.+++. ++..-|||||.+|+..++.. |+|+|++-|... +...++.+.++. . .++
T Consensus 170 ~v~~~r~~~~~~~~I~vev~t~eea~~A~~~-gaD~I~ld~~~~----------------e~l~~~v~~i~~--~--~~i 228 (269)
T cd01568 170 AVKRARAAAPFEKKIEVEVETLEEAEEALEA-GADIIMLDNMSP----------------EELKEAVKLLKG--L--PRV 228 (269)
T ss_pred HHHHHHHhCCCCCeEEEecCCHHHHHHHHHc-CCCEEEECCCCH----------------HHHHHHHHHhcc--C--CCe
Confidence 44555553 46788999999999999997 999999965432 334444443221 1 257
Q ss_pred eEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015424 357 IVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 391 (407)
Q Consensus 357 ~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 391 (407)
++++.||| |++++..+.++|+|++.+| +++.+.
T Consensus 229 ~i~asGGI-t~~ni~~~a~~Gad~Isvg-al~~s~ 261 (269)
T cd01568 229 LLEASGGI-TLENIRAYAETGVDVISTG-ALTHSA 261 (269)
T ss_pred EEEEECCC-CHHHHHHHHHcCCCEEEEc-HHHcCC
Confidence 89999999 8999999999999999997 444443
No 158
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=97.70 E-value=0.0033 Score=60.76 Aligned_cols=128 Identities=16% Similarity=0.201 Sum_probs=88.5
Q ss_pred CCcEEeccccCCHHHHHHHH---HcCCCEEEEeccC--------------C-CHHHHHHHHHHHHHcCCcEEEEeC----
Q 015424 239 KCPLLCKEFIVDAWQIYYAR---TKGADAVLLIAAV--------------L-PDLDIRYMTKICKLLGLTALVEVH---- 296 (407)
Q Consensus 239 ~lPVL~KDFIid~~QI~eAr---~~GADaVLLiaai--------------L-~~~~L~~Li~~a~~LGL~aLVEVh---- 296 (407)
+.|+...=+.-++.++.++. ..++|.|=|+... | +++.+.++++..++.++.+.|-+.
T Consensus 72 ~~p~~vqi~g~~~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g~~ 151 (233)
T cd02911 72 NVLVGVNVRSSSLEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAGVD 151 (233)
T ss_pred CCeEEEEecCCCHHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcCCcC
Confidence 56777766667776655432 2356888887663 2 356778888888888888888774
Q ss_pred -CHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHH
Q 015424 297 -DEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQE 375 (407)
Q Consensus 297 -t~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~ 375 (407)
+..++-+.+.-.|++.|-+.++.- ....|++...++. .++++|+-|||.|++|+.++..
T Consensus 152 ~~~~~la~~l~~aG~d~ihv~~~~~----------g~~ad~~~I~~i~----------~~ipVIgnGgI~s~eda~~~l~ 211 (233)
T cd02911 152 VDDEELARLIEKAGADIIHVDAMDP----------GNHADLKKIRDIS----------TELFIIGNNSVTTIESAKEMFS 211 (233)
T ss_pred cCHHHHHHHHHHhCCCEEEECcCCC----------CCCCcHHHHHHhc----------CCCEEEEECCcCCHHHHHHHHH
Confidence 445554444334999876643311 1345654443332 2578999999999999999999
Q ss_pred cCCCEEEEccc
Q 015424 376 AGVKAVLVGES 386 (407)
Q Consensus 376 ~GadaVLVGea 386 (407)
.|||+|-||.+
T Consensus 212 ~GaD~VmiGR~ 222 (233)
T cd02911 212 YGADMVSVARA 222 (233)
T ss_pred cCCCEEEEcCC
Confidence 99999999999
No 159
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=97.69 E-value=0.00092 Score=67.89 Aligned_cols=213 Identities=16% Similarity=0.101 Sum_probs=119.4
Q ss_pred EEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEEecCC----------cC--C--------------CCHHHHHHH
Q 015424 180 IAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEK----------YF--K--------------GSFENLEAV 233 (407)
Q Consensus 180 IAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVLTd~~----------~F--~--------------Gs~edL~~V 233 (407)
++-++-.+|- |.=.....-.+..+.+.+.|+.+|-+=|-.. .| . |--..+..+
T Consensus 53 ~~Gl~l~nPi-~~AsG~~~~~~~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~~~l 131 (344)
T PRK05286 53 VMGLTFPNPV-GLAAGFDKNGEAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADALAERL 131 (344)
T ss_pred ECCEECCCCC-EECCCCCCChHHHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCCCHhHHHHHHHH
Confidence 4456667775 3222212223556667788877775533211 11 0 011245555
Q ss_pred HhcCCCCcEEe---cc------ccCCHH-HHHHHHHcCCCEEEEeccCC---------CHHHHHHHHHHHHH-cC-----
Q 015424 234 RSAGVKCPLLC---KE------FIVDAW-QIYYARTKGADAVLLIAAVL---------PDLDIRYMTKICKL-LG----- 288 (407)
Q Consensus 234 r~a~v~lPVL~---KD------FIid~~-QI~eAr~~GADaVLLiaaiL---------~~~~L~~Li~~a~~-LG----- 288 (407)
++...++||+. +. .....| ++.+-..-+||++.|..+.- ..+.+.++++..++ .+
T Consensus 132 ~~~~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~ 211 (344)
T PRK05286 132 KKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGY 211 (344)
T ss_pred HHhcCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccC
Confidence 54224688873 21 112222 22222223599999986532 33466777777665 45
Q ss_pred CcEEEEeC---C---HHHHHHHhcccCCcEEEeeccccccc----------cccccc-cccccCchhHHHHhhccccccc
Q 015424 289 LTALVEVH---D---EREMDRVLGIEGIELIGINNRNLAIS----------IFSYRT-ETFEVDNSNTKKLLEGERGEII 351 (407)
Q Consensus 289 L~aLVEVh---t---~eElerAl~l~Ga~iIGINnRdL~~~----------~~~~t~-~Tf~vDl~~t~~L~~~~~~~~i 351 (407)
+.++|-+. + ..++-+++...|++.|-+-|+..... ..+++. ......++...++.+. +
T Consensus 212 ~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~-----~ 286 (344)
T PRK05286 212 VPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKE-----L 286 (344)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHH-----h
Confidence 78888876 2 33343333324999888877642000 001110 0111233344444332 1
Q ss_pred ccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccC-CCChHHHHHh
Q 015424 352 RQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK-QDDPGKGITG 399 (407)
Q Consensus 352 ~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk-~~dp~~~i~~ 399 (407)
+.++++|+.|||.|++|+.++..+||++|-||++++. +++....+++
T Consensus 287 -~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~ 334 (344)
T PRK05286 287 -GGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVR 334 (344)
T ss_pred -CCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHH
Confidence 2368999999999999999999999999999999975 5776655544
No 160
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=97.69 E-value=0.00028 Score=69.52 Aligned_cols=87 Identities=18% Similarity=0.271 Sum_probs=65.1
Q ss_pred HHHHHHH-c--CCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCc
Q 015424 280 MTKICKL-L--GLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNI 356 (407)
Q Consensus 280 Li~~a~~-L--GL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v 356 (407)
-++.+++ + +.-.-+||||.+|+..|.+. |+|+|++-|-.. +...+..+.+ ...+
T Consensus 167 av~~~r~~~~~~~~Igvev~t~eea~~A~~~-gaDyI~ld~~~~----------------e~lk~~v~~~------~~~i 223 (265)
T TIGR00078 167 AVKRARAAAPFALKIEVEVESLEEAEEAAEA-GADIIMLDNMKP----------------EEIKEAVQLL------KGRV 223 (265)
T ss_pred HHHHHHHhCCCCCeEEEEeCCHHHHHHHHHc-CCCEEEECCCCH----------------HHHHHHHHHh------cCCC
Confidence 3444554 3 46678999999999999997 999999955322 3344544432 1236
Q ss_pred eEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015424 357 IVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 391 (407)
Q Consensus 357 ~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 391 (407)
++++.||| +++++..+.+.|+|++-| ++|+.+.
T Consensus 224 pi~AsGGI-~~~ni~~~a~~Gvd~Isv-gait~sa 256 (265)
T TIGR00078 224 LLEASGGI-TLDNLEEYAETGVDVISS-GALTHSV 256 (265)
T ss_pred cEEEECCC-CHHHHHHHHHcCCCEEEe-CHHHcCC
Confidence 89999999 899999999999999999 5566543
No 161
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=97.67 E-value=0.00035 Score=70.46 Aligned_cols=165 Identities=22% Similarity=0.268 Sum_probs=94.8
Q ss_pred ceEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEEecC----------CcCCCCHHHHHHHHhcCCCCcEEecc
Q 015424 177 PALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDE----------KYFKGSFENLEAVRSAGVKCPLLCKE 246 (407)
Q Consensus 177 ~~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVLTd~----------~~F~Gs~edL~~Vr~a~v~lPVL~KD 246 (407)
..+|+++=-..+. ..++.+++++.+..+|.++.+.-.+ +-|.+-.+.|+.+++. +++||+.|.
T Consensus 113 ~p~~~Nl~~~~~~------~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~-~~vPVivK~ 185 (326)
T cd02811 113 GPLIANLGAVQLN------GYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKA-LSVPVIVKE 185 (326)
T ss_pred ceEEeecCccccC------CCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHh-cCCCEEEEe
Confidence 4588877533221 3478888888877788877775422 1244444778888886 899999985
Q ss_pred --ccCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcE--EEEeCCHHHHHHHhcccCCcEEEeecccccc
Q 015424 247 --FIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTA--LVEVHDEREMDRVLGIEGIELIGINNRNLAI 322 (407)
Q Consensus 247 --FIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~a--LVEVht~eElerAl~l~Ga~iIGINnRdL~~ 322 (407)
+..+...+.....+|+|+|.+-.. |=.- .+|-|-.. .. +.. .+. .+
T Consensus 186 ~g~g~s~~~a~~l~~~Gvd~I~vsG~-----------------GGt~~~~ie~~r~~------~~-~~~-~~~---~~-- 235 (326)
T cd02811 186 VGFGISRETAKRLADAGVKAIDVAGA-----------------GGTSWARVENYRAK------DS-DQR-LAE---YF-- 235 (326)
T ss_pred cCCCCCHHHHHHHHHcCCCEEEECCC-----------------CCCccccccccccc------cc-ccc-ccc---cc--
Confidence 334455555556667777665321 1111 11211100 00 000 000 00
Q ss_pred ccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015424 323 SIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 391 (407)
Q Consensus 323 ~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 391 (407)
.++. +.+...|... ... . .++++|+.|||.+..|+.++..+||++|-||+++++.-
T Consensus 236 -------~~~g--~~t~~~l~~~-~~~-~--~~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~ 291 (326)
T cd02811 236 -------ADWG--IPTAASLLEV-RSA-L--PDLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAA 291 (326)
T ss_pred -------cccc--ccHHHHHHHH-HHH-c--CCCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHH
Confidence 1111 1122222221 110 1 26899999999999999999999999999999876543
No 162
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.65 E-value=0.00037 Score=69.24 Aligned_cols=84 Identities=18% Similarity=0.315 Sum_probs=63.3
Q ss_pred HHHHHHH-cC--CcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCc
Q 015424 280 MTKICKL-LG--LTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNI 356 (407)
Q Consensus 280 Li~~a~~-LG--L~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v 356 (407)
-++.+++ +| +-.=+||||.+|+.+|.+. |+|+|++.|. .++...++.+.+ +..+
T Consensus 177 ~v~~aR~~~~~~~~Igvsv~tleea~~A~~~-gaDyI~lD~~----------------~~e~l~~~~~~~------~~~i 233 (277)
T PRK08072 177 AVTSVREKLGHMVKIEVETETEEQVREAVAA-GADIIMFDNR----------------TPDEIREFVKLV------PSAI 233 (277)
T ss_pred HHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc-CCCEEEECCC----------------CHHHHHHHHHhc------CCCc
Confidence 3344444 33 5567999999999999996 9999999432 234455555431 2347
Q ss_pred eEEEeeCCCCHHHHHHHHHcCCCEEEEcccc
Q 015424 357 IVVGESGLFTPDDIAYVQEAGVKAVLVGESI 387 (407)
Q Consensus 357 ~vVAESGI~t~eD~~~l~~~GadaVLVGeaL 387 (407)
++++.||| +++++..+.+.|+|++-||.-.
T Consensus 234 ~i~AiGGI-t~~ni~~~a~~Gvd~IAvg~l~ 263 (277)
T PRK08072 234 VTEASGGI-TLENLPAYGGTGVDYISLGFLT 263 (277)
T ss_pred eEEEECCC-CHHHHHHHHHcCCCEEEEChhh
Confidence 88999999 9999999999999999999743
No 163
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=97.65 E-value=0.0003 Score=69.48 Aligned_cols=80 Identities=16% Similarity=0.243 Sum_probs=59.8
Q ss_pred CCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCH
Q 015424 288 GLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTP 367 (407)
Q Consensus 288 GL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~ 367 (407)
+...-|||||.+|+.+|+++ |+++|++.|... + + ..++.+.++. . ..++++++.||| ++
T Consensus 183 ~~~IgVev~t~eea~~A~~~-gaD~I~ld~~~p---------~----~---l~~~~~~~~~--~-~~~i~i~AsGGI-~~ 241 (272)
T cd01573 183 EKKIVVEVDSLEEALAAAEA-GADILQLDKFSP---------E----E---LAELVPKLRS--L-APPVLLAAAGGI-NI 241 (272)
T ss_pred CCeEEEEcCCHHHHHHHHHc-CCCEEEECCCCH---------H----H---HHHHHHHHhc--c-CCCceEEEECCC-CH
Confidence 45678999999999999997 999999975433 2 2 2333332211 1 135899999999 99
Q ss_pred HHHHHHHHcCCCEEEEcccccC
Q 015424 368 DDIAYVQEAGVKAVLVGESIVK 389 (407)
Q Consensus 368 eD~~~l~~~GadaVLVGeaLmk 389 (407)
+++..+.++|+|+| +.++|+.
T Consensus 242 ~ni~~~~~~Gvd~I-~vsai~~ 262 (272)
T cd01573 242 ENAAAYAAAGADIL-VTSAPYY 262 (272)
T ss_pred HHHHHHHHcCCcEE-EEChhhc
Confidence 99999999999999 5556665
No 164
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=97.64 E-value=0.00032 Score=68.16 Aligned_cols=184 Identities=22% Similarity=0.197 Sum_probs=106.5
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCC---CHHHHHHHHhcCCCCcEEecc-ccCCHH---HH-HHHHHc-CCCEEEEe
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKG---SFENLEAVRSAGVKCPLLCKE-FIVDAW---QI-YYARTK-GADAVLLI 268 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~G---s~edL~~Vr~a~v~lPVL~KD-FIid~~---QI-~eAr~~-GADaVLLi 268 (407)
++..+.++.+..|+..+-|--...-..+ ....+..++. .++-+|-.- +-.+.. .+ ..||++ |-|-|=|=
T Consensus 20 s~~~m~~ai~aSg~evvTvalRR~~~~~~~~~~~~~~~i~~--~~~~lLPNTaGc~tA~EAv~~A~laRe~~~t~wIKLE 97 (247)
T PF05690_consen 20 SPEVMREAIEASGAEVVTVALRRVNLGSKPGGDNILDYIDR--SGYTLLPNTAGCRTAEEAVRTARLAREAFGTNWIKLE 97 (247)
T ss_dssp SHHHHHHHHHHTT-SEEEEECCGSTTTS-TTCHHCCCCTTC--CTSEEEEE-TT-SSHHHHHHHHHHHHHTTS-SEEEE-
T ss_pred CHHHHHHHHHHhCCcEEEEEEecccCCCCCCCccHHHHhcc--cCCEECCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 7888899999999998888654443333 2344444443 245555111 111121 11 125555 66776662
Q ss_pred cc----CCCHHHHHHHHHHHHHc---CCcEEEEeC-CHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHH
Q 015424 269 AA----VLPDLDIRYMTKICKLL---GLTALVEVH-DEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTK 340 (407)
Q Consensus 269 aa----iL~~~~L~~Li~~a~~L---GL~aLVEVh-t~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~ 340 (407)
+- .|- .|-.++++.++.| |..+|-=++ |.--.++..++ |+..|.--.. -||++.|.. |....+
T Consensus 98 Vi~D~~~L~-PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~-GcaavMPlgs-PIGSg~Gi~------n~~~l~ 168 (247)
T PF05690_consen 98 VIGDDKTLL-PDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEDA-GCAAVMPLGS-PIGSGRGIQ------NPYNLR 168 (247)
T ss_dssp -BS-TTT---B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHT-T-SEBEEBSS-STTT---SS------THHHHH
T ss_pred EeCCCCCcC-CChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHC-CCCEEEeccc-ccccCcCCC------CHHHHH
Confidence 21 221 1345677888876 999998887 55555666676 8887765322 223333332 233334
Q ss_pred HHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhh
Q 015424 341 KLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 400 (407)
Q Consensus 341 ~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L 400 (407)
.+.+. .+++||...||.+|.|+..++++|||||||.++|.++.||..-.+.+
T Consensus 169 ~i~~~--------~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af 220 (247)
T PF05690_consen 169 IIIER--------ADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAF 220 (247)
T ss_dssp HHHHH--------GSSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHH
T ss_pred HHHHh--------cCCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHH
Confidence 44443 36899999999999999999999999999999999999998766554
No 165
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=97.64 E-value=0.0016 Score=65.91 Aligned_cols=183 Identities=20% Similarity=0.215 Sum_probs=105.8
Q ss_pred HHHHHHHHHHcCCcEEEEEecCCcCCCCH---HHHHHHHhcCCCCcEEeccccCC-----HHHHHHH-HHcCCCEEEEec
Q 015424 199 PVEIARSYEKGGAACLSILTDEKYFKGSF---ENLEAVRSAGVKCPLLCKEFIVD-----AWQIYYA-RTKGADAVLLIA 269 (407)
Q Consensus 199 p~~iA~ay~~~GA~aISVLTd~~~F~Gs~---edL~~Vr~a~v~lPVL~KDFIid-----~~QI~eA-r~~GADaVLLia 269 (407)
-.++|+...+.|..+ .+ .....+-=+. +....+|+...+.|++..=|... ..++.++ ...+||++-+..
T Consensus 72 n~~La~~a~~~g~~~-~~-Gs~~~~~~~~~~~~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~l 149 (333)
T TIGR02151 72 NRNLARAARELGIPM-GV-GSQRAALKDPETADTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHL 149 (333)
T ss_pred HHHHHHHHHHcCCCe-EE-cCchhhccChhhHhHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcC
Confidence 356788888888432 22 1111110022 24466776337999997654322 2234443 345788877765
Q ss_pred cCC-------CHHHHH---HHHHH-HHHcCCcEEEE-e---CCHHHHHHHhcccCCcEEEeeccccccccccc----cc-
Q 015424 270 AVL-------PDLDIR---YMTKI-CKLLGLTALVE-V---HDEREMDRVLGIEGIELIGINNRNLAISIFSY----RT- 329 (407)
Q Consensus 270 aiL-------~~~~L~---~Li~~-a~~LGL~aLVE-V---ht~eElerAl~l~Ga~iIGINnRdL~~~~~~~----t~- 329 (407)
-.+ .+.++. +.++. .+.++..++|- + .+.+++..+.++ |++.|-+-++.- +.+.. +.
T Consensus 150 n~~q~~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~a-Gvd~I~Vsg~gG--t~~~~ie~~r~~ 226 (333)
T TIGR02151 150 NVLQELVQPEGDRNFKGWLEKIAEICSQLSVPVIVKEVGFGISKEVAKLLADA-GVSAIDVAGAGG--TSWAQVENYRAK 226 (333)
T ss_pred cccccccCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHc-CCCEEEECCCCC--Ccccchhhhccc
Confidence 322 111333 33333 33457777663 3 478888888887 999999977532 11000 00
Q ss_pred c----cccc--CchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015424 330 E----TFEV--DNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 390 (407)
Q Consensus 330 ~----Tf~v--Dl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~ 390 (407)
. .+-. .+.+...|... .. + ..++++|+.|||.+++|+.++..+|||+|-+|.++++.
T Consensus 227 ~~~~~~~~~~~g~~t~~~l~~~-~~--~-~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~~ 289 (333)
T TIGR02151 227 GSNLASFFNDWGIPTAASLLEV-RS--D-APDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLKA 289 (333)
T ss_pred ccccchhhhcccHhHHHHHHHH-Hh--c-CCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHH
Confidence 0 1111 22233333322 11 0 13589999999999999999999999999999999853
No 166
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.63 E-value=0.00037 Score=68.77 Aligned_cols=77 Identities=21% Similarity=0.315 Sum_probs=61.5
Q ss_pred CCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCH
Q 015424 288 GLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTP 367 (407)
Q Consensus 288 GL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~ 367 (407)
++-.-|||||.+|+..|++. |+|+|++-|-. ++...++.+.. +.++++++.||| |+
T Consensus 182 ~~~Igvev~s~eea~~A~~~-gaDyI~ld~~~----------------~e~l~~~~~~~------~~~ipi~AiGGI-~~ 237 (268)
T cd01572 182 TLKIEVEVETLEQLKEALEA-GADIIMLDNMS----------------PEELREAVALL------KGRVLLEASGGI-TL 237 (268)
T ss_pred CCeEEEEECCHHHHHHHHHc-CCCEEEECCcC----------------HHHHHHHHHHc------CCCCcEEEECCC-CH
Confidence 46678999999999999997 99999995432 24445554431 125789999999 89
Q ss_pred HHHHHHHHcCCCEEEEccccc
Q 015424 368 DDIAYVQEAGVKAVLVGESIV 388 (407)
Q Consensus 368 eD~~~l~~~GadaVLVGeaLm 388 (407)
+++..+.+.|+|++.||.-..
T Consensus 238 ~ni~~~a~~Gvd~Iav~sl~~ 258 (268)
T cd01572 238 ENIRAYAETGVDYISVGALTH 258 (268)
T ss_pred HHHHHHHHcCCCEEEEEeeec
Confidence 999999999999999998554
No 167
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=97.61 E-value=0.002 Score=65.26 Aligned_cols=154 Identities=14% Similarity=0.078 Sum_probs=100.9
Q ss_pred CCCcEEeccccCCHHHHHHH----HHcCCCEEEEeccC--------------C-CHHHHHHHHHHHHH-cCCcEEEEe--
Q 015424 238 VKCPLLCKEFIVDAWQIYYA----RTKGADAVLLIAAV--------------L-PDLDIRYMTKICKL-LGLTALVEV-- 295 (407)
Q Consensus 238 v~lPVL~KDFIid~~QI~eA----r~~GADaVLLiaai--------------L-~~~~L~~Li~~a~~-LGL~aLVEV-- 295 (407)
...|+...=|.-+|.++.+| ..+|+|+|-|.+.. + ..+.+.++++..++ .++.+.|-+
T Consensus 63 ~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~ 142 (333)
T PRK11815 63 EEHPVALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRI 142 (333)
T ss_pred CCCcEEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEe
Confidence 35688887777888876553 35699999887542 2 22345556665554 344444321
Q ss_pred --C---CHH---HH-HHHhcccCCcEEEeeccccccccccccc----cccccCchhHHHHhhcccccccccCCceEEEee
Q 015424 296 --H---DER---EM-DRVLGIEGIELIGINNRNLAISIFSYRT----ETFEVDNSNTKKLLEGERGEIIRQKNIIVVGES 362 (407)
Q Consensus 296 --h---t~e---El-erAl~l~Ga~iIGINnRdL~~~~~~~t~----~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAES 362 (407)
. +.+ ++ ..+.+. |++.|-+..|+-. ..+|+. .....|++...++.+.. .++++|+-|
T Consensus 143 g~~~~~t~~~~~~~~~~l~~a-G~d~i~vh~Rt~~--~~g~~~~~~~~~~~~~~~~i~~v~~~~-------~~iPVI~nG 212 (333)
T PRK11815 143 GIDDQDSYEFLCDFVDTVAEA-GCDTFIVHARKAW--LKGLSPKENREIPPLDYDRVYRLKRDF-------PHLTIEING 212 (333)
T ss_pred eeCCCcCHHHHHHHHHHHHHh-CCCEEEEcCCchh--hcCCCccccccCCCcCHHHHHHHHHhC-------CCCeEEEEC
Confidence 1 122 33 333344 8999999877520 112221 11235666666665431 258999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 363 GLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 363 GI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
||.|++|+.++.+ |||+|.||.+++..+.....+++.+.
T Consensus 213 gI~s~eda~~~l~-~aDgVmIGRa~l~nP~~~~~~~~~~~ 251 (333)
T PRK11815 213 GIKTLEEAKEHLQ-HVDGVMIGRAAYHNPYLLAEVDRELF 251 (333)
T ss_pred CcCCHHHHHHHHh-cCCEEEEcHHHHhCCHHHHHHHHHhc
Confidence 9999999999987 79999999999999998888877654
No 168
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=97.61 E-value=0.002 Score=64.15 Aligned_cols=90 Identities=17% Similarity=0.156 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHc--CCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhccccccccc
Q 015424 276 DIRYMTKICKLL--GLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQ 353 (407)
Q Consensus 276 ~L~~Li~~a~~L--GL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~ 353 (407)
.+...++.+++. +..+-|||.|.+|+..++++ |+++|..-|-+. +...+.++.+++ . .
T Consensus 174 ~i~~av~~~r~~~~~~kIeVEv~tleea~ea~~~-GaDiI~lDn~~~----------------e~l~~~v~~l~~--~-~ 233 (277)
T TIGR01334 174 DWGGAIGRLKQTAPERKITVEADTIEQALTVLQA-SPDILQLDKFTP----------------QQLHHLHERLKF--F-D 233 (277)
T ss_pred cHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc-CcCEEEECCCCH----------------HHHHHHHHHHhc--c-C
Confidence 577777777775 67899999999999999997 999999965433 333444443211 1 2
Q ss_pred CCceEEEeeCCCCHHHHHHHHHcCCCEEEEccc
Q 015424 354 KNIIVVGESGLFTPDDIAYVQEAGVKAVLVGES 386 (407)
Q Consensus 354 ~~v~vVAESGI~t~eD~~~l~~~GadaVLVGea 386 (407)
.++.+-+.||| +++++..+...|+|.+.+|.-
T Consensus 234 ~~~~leasGGI-~~~ni~~ya~~GvD~is~gal 265 (277)
T TIGR01334 234 HIPTLAAAGGI-NPENIADYIEAGIDLFITSAP 265 (277)
T ss_pred CCEEEEEECCC-CHHHHHHHHhcCCCEEEeCcc
Confidence 46788899999 999999999999999988863
No 169
>PRK08508 biotin synthase; Provisional
Probab=97.59 E-value=0.01 Score=58.50 Aligned_cols=198 Identities=12% Similarity=0.034 Sum_probs=115.4
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCc-CCCCHHHHH----HHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEecc--
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKY-FKGSFENLE----AVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA-- 270 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~-F~Gs~edL~----~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa-- 270 (407)
+..+.|+...+.|+..++++|.... ..-.++++. .||+...++.+..-....++.++.+-+.+|+|++.+...
T Consensus 44 eI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lEt~ 123 (279)
T PRK08508 44 QIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNHNLETS 123 (279)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEcccccch
Confidence 4445555556679999998765442 223454444 445432245554455667899999999999999996422
Q ss_pred ------CCC---HHHHHHHHHHHHHcCCcE----EEEeC-CHHHHH----HHhcccCCcEEEeecccccccccccccccc
Q 015424 271 ------VLP---DLDIRYMTKICKLLGLTA----LVEVH-DEREMD----RVLGIEGIELIGINNRNLAISIFSYRTETF 332 (407)
Q Consensus 271 ------iL~---~~~L~~Li~~a~~LGL~a----LVEVh-t~eEle----rAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf 332 (407)
+.+ -++.-+.++.++++|+++ ++-.. +.+|.. ...++ +.+.|.+|.-. +..+++-...
T Consensus 124 ~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGEt~ed~~~~l~~lr~L-~~~svpl~~~~---p~~~t~~~~~ 199 (279)
T PRK08508 124 KEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGESWEDRISFLKSLASL-SPHSTPINFFI---PNPALPLKAP 199 (279)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEecCCCHHHHHHHHHHHHcC-CCCEEeeCCcC---CCCCCCCCCC
Confidence 222 234444677799999877 44432 344433 33456 77888887633 3333332222
Q ss_pred ccCchhHHHHhhcccccccccCCceEEEeeCC-CC-HHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 333 EVDNSNTKKLLEGERGEIIRQKNIIVVGESGL-FT-PDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 333 ~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI-~t-~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
..+.....+++...| .+.| +..+-..+|- .. .+.-..+..+|++++++|..|+......+.=.+++.
T Consensus 200 ~~~~~~~lr~iAv~R--l~lp-~~~i~~~~gr~~~~~~~~~~~~~~g~n~~~~g~~lt~~g~~~~~d~~~~~ 268 (279)
T PRK08508 200 TLSADEALEIVRLAK--EALP-NARLMVAGGREVVFGERQYEIFEAGANAIVIGDYLTTKGEAPKKDIEKLK 268 (279)
T ss_pred CCCHHHHHHHHHHHH--HHCC-CceeeecCChhhhchhhHHHHHhcCCcceeecCcccCCCCChHHHHHHHH
Confidence 344444444433221 1224 3344444444 22 333455678999999999999988776655555543
No 170
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=97.59 E-value=0.0035 Score=61.67 Aligned_cols=178 Identities=24% Similarity=0.296 Sum_probs=112.3
Q ss_pred HHHHHHHHHcCCcEEEEEe--cCCcCCC-CHHHHH-------HHHhcCCCCcE----EeccccCCHH-HHHHHHHcCCCE
Q 015424 200 VEIARSYEKGGAACLSILT--DEKYFKG-SFENLE-------AVRSAGVKCPL----LCKEFIVDAW-QIYYARTKGADA 264 (407)
Q Consensus 200 ~~iA~ay~~~GA~aISVLT--d~~~F~G-s~edL~-------~Vr~a~v~lPV----L~KDFIid~~-QI~eAr~~GADa 264 (407)
.+=|+.|+++|+++|-|-. |-.|.+. +++-+. ++|+. +++|+ |+.| +. -+.-|.+.|||-
T Consensus 32 ~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~-~~~p~GVnvL~nd----~~aalaiA~A~ga~F 106 (254)
T PF03437_consen 32 VREAEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRRE-VSVPVGVNVLRND----PKAALAIAAATGADF 106 (254)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHh-CCCCEEeeeecCC----CHHHHHHHHHhCCCE
Confidence 3447889999999999864 3334444 223332 23454 67774 4545 43 466688999998
Q ss_pred EEEec---cCCCH-----HHHHHHHHHHHHcCCc--EEEEeC----------CHHHH-HHHhcccCCcEEEeeccccccc
Q 015424 265 VLLIA---AVLPD-----LDIRYMTKICKLLGLT--ALVEVH----------DEREM-DRVLGIEGIELIGINNRNLAIS 323 (407)
Q Consensus 265 VLLia---aiL~~-----~~L~~Li~~a~~LGL~--aLVEVh----------t~eEl-erAl~l~Ga~iIGINnRdL~~~ 323 (407)
|=+.+ +.+++ .+..+++++-+.+|-+ .|.+|| +.+|. ..+.+-.++|-|-+....
T Consensus 107 IRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~v~ilaDV~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~---- 182 (254)
T PF03437_consen 107 IRVNVFVGAYVTDEGIIEGCAGELLRYRKRLGADVKILADVHVKHSSPLATRDLEEAAKDAVERGGADAVIVTGKA---- 182 (254)
T ss_pred EEecCEEceecccCccccccHHHHHHHHHHcCCCeEEEeeechhhcccCCCCCHHHHHHHHHHhcCCCEEEECCcc----
Confidence 76322 12222 2455677766666554 455655 24444 333233478888775431
Q ss_pred cccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCCh-----HHHHH
Q 015424 324 IFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDP-----GKGIT 398 (407)
Q Consensus 324 ~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp-----~~~i~ 398 (407)
+.-++|++...+..+. . +++++..||+ |++.+..+++. |||++||++|-+..+. .++++
T Consensus 183 ------TG~~~~~~~l~~vr~~-----~---~~PVlvGSGv-t~~Ni~~~l~~-ADG~IVGS~~K~~G~~~n~VD~~Rv~ 246 (254)
T PF03437_consen 183 ------TGEPPDPEKLKRVREA-----V---PVPVLVGSGV-TPENIAEYLSY-ADGAIVGSYFKKDGKWENPVDPERVR 246 (254)
T ss_pred ------cCCCCCHHHHHHHHhc-----C---CCCEEEecCC-CHHHHHHHHHh-CCEEEEeeeeeeCCEeCCcCCHHHHH
Confidence 2245777776666554 1 2789999999 99999998877 9999999999976552 35566
Q ss_pred hhhc
Q 015424 399 GLFG 402 (407)
Q Consensus 399 ~L~~ 402 (407)
+|+.
T Consensus 247 ~fm~ 250 (254)
T PF03437_consen 247 RFME 250 (254)
T ss_pred HHHH
Confidence 6553
No 171
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=97.57 E-value=0.004 Score=60.86 Aligned_cols=167 Identities=22% Similarity=0.273 Sum_probs=105.3
Q ss_pred HHHHHHHHHcCCcEEEEE--ecCCcCCC-CHHHH-------HHHHhcCCCCc----EEeccccCCHHHHHHHHHcCCCEE
Q 015424 200 VEIARSYEKGGAACLSIL--TDEKYFKG-SFENL-------EAVRSAGVKCP----LLCKEFIVDAWQIYYARTKGADAV 265 (407)
Q Consensus 200 ~~iA~ay~~~GA~aISVL--Td~~~F~G-s~edL-------~~Vr~a~v~lP----VL~KDFIid~~QI~eAr~~GADaV 265 (407)
..=|.+|+++|+++|-|= -|-+|.+- +++-. .+|++. +.+| ||+.|- +..+.| |++.|||-|
T Consensus 37 ~~dA~~leegG~DavivEN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~-v~iPvGvNVLrNd~-vaA~~I--A~a~gA~FI 112 (263)
T COG0434 37 VRDAAALEEGGVDAVIVENYGDAPFLKDVGPETVAAMAVIVREVVRE-VSIPVGVNVLRNDA-VAALAI--AYAVGADFI 112 (263)
T ss_pred HHHHHHHHhCCCcEEEEeccCCCCCCCCCChHHHHHHHHHHHHHHHh-ccccceeeeecccc-HHHHHH--HHhcCCCEE
Confidence 344788999999999883 12222220 12221 122333 5677 688885 444455 788999987
Q ss_pred EEecc---------CCCHHHHHHHHHHHHHc--CCcEEEEeC----------CHHHHHHH-hcccCCcEEEeeccccccc
Q 015424 266 LLIAA---------VLPDLDIRYMTKICKLL--GLTALVEVH----------DEREMDRV-LGIEGIELIGINNRNLAIS 323 (407)
Q Consensus 266 LLiaa---------iL~~~~L~~Li~~a~~L--GL~aLVEVh----------t~eElerA-l~l~Ga~iIGINnRdL~~~ 323 (407)
=..+- ++.. +-.++.++-+.| ++.+|.+|| +.+|.-+= ++-.+||-|-++.+-
T Consensus 113 RVN~~tg~~~tdqGiieg-~A~e~~r~r~~L~~~v~vlADv~VKHa~~l~~~~~~~~v~dtver~~aDaVI~tG~~---- 187 (263)
T COG0434 113 RVNVLTGAYATDQGIIEG-NAAELARYRARLGSRVKVLADVHVKHAVHLGNRSLEEAVKDTVERGLADAVIVTGSR---- 187 (263)
T ss_pred EEEeeeceEecccceecc-hHHHHHHHHHhccCCcEEEeecchhcccccCCcCHHHHHHHHHHccCCCEEEEeccc----
Confidence 64322 3333 345666666666 477788887 45554322 332366766554331
Q ss_pred cccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015424 324 IFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 391 (407)
Q Consensus 324 ~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 391 (407)
+--.+|++..+...+. .++++++.||+ +++.+..+.++ +|||+||++|=+..
T Consensus 188 ------TG~~~d~~el~~a~~~--------~~~pvlvGSGv-~~eN~~~~l~~-adG~IvgT~lK~~G 239 (263)
T COG0434 188 ------TGSPPDLEELKLAKEA--------VDTPVLVGSGV-NPENIEELLKI-ADGVIVGTSLKKGG 239 (263)
T ss_pred ------CCCCCCHHHHHHHHhc--------cCCCEEEecCC-CHHHHHHHHHH-cCceEEEEEEccCC
Confidence 2245787765444332 34799999999 99999999999 99999999998876
No 172
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=97.56 E-value=0.00031 Score=72.67 Aligned_cols=103 Identities=22% Similarity=0.374 Sum_probs=74.4
Q ss_pred CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHh
Q 015424 226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVL 305 (407)
Q Consensus 226 s~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl 305 (407)
+.+||+.+|+. +++||+.|.. .+..+...+..+|||+|.+-- .|=.
T Consensus 233 tW~di~~lr~~-~~~pvivKgV-~s~~dA~~a~~~Gvd~I~Vs~-----------------hGGr--------------- 278 (381)
T PRK11197 233 SWKDLEWIRDF-WDGPMVIKGI-LDPEDARDAVRFGADGIVVSN-----------------HGGR--------------- 278 (381)
T ss_pred CHHHHHHHHHh-CCCCEEEEec-CCHHHHHHHHhCCCCEEEECC-----------------CCCC---------------
Confidence 68999999987 8999999996 888999999999999998421 0100
Q ss_pred cccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcc
Q 015424 306 GIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGE 385 (407)
Q Consensus 306 ~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGe 385 (407)
.+.++ . .|+ ....++.+. + ..++.+++-|||.+..|+.++..+||++|.+|.
T Consensus 279 ~~d~~---------~---------~t~----~~L~~i~~a-----~-~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr 330 (381)
T PRK11197 279 QLDGV---------L---------SSA----RALPAIADA-----V-KGDITILADSGIRNGLDVVRMIALGADTVLLGR 330 (381)
T ss_pred CCCCc---------c---------cHH----HHHHHHHHH-----h-cCCCeEEeeCCcCcHHHHHHHHHcCcCceeEhH
Confidence 00000 0 111 111222221 1 135789999999999999999999999999999
Q ss_pred cccCC
Q 015424 386 SIVKQ 390 (407)
Q Consensus 386 aLmk~ 390 (407)
.++..
T Consensus 331 ~~l~~ 335 (381)
T PRK11197 331 AFVYA 335 (381)
T ss_pred HHHHH
Confidence 98865
No 173
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=97.54 E-value=0.0074 Score=59.53 Aligned_cols=175 Identities=19% Similarity=0.252 Sum_probs=108.4
Q ss_pred HHHHHHHHcCCcEEEEEecCCcCCCCH---------HHHH----HHHhcCCCCc----EEeccccCCHH-HHHHHHHcCC
Q 015424 201 EIARSYEKGGAACLSILTDEKYFKGSF---------ENLE----AVRSAGVKCP----LLCKEFIVDAW-QIYYARTKGA 262 (407)
Q Consensus 201 ~iA~ay~~~GA~aISVLTd~~~F~Gs~---------edL~----~Vr~a~v~lP----VL~KDFIid~~-QI~eAr~~GA 262 (407)
+=|++|+++|+++|-|= +||.-=+ ..+. ++|+. +++| ||+.| +. -+.-|.++||
T Consensus 32 ~ea~~l~~~GvD~vive---N~~d~P~~~~~~p~tva~m~~i~~~v~~~-~~~p~GvnvL~nd----~~aal~iA~a~ga 103 (257)
T TIGR00259 32 KDAMALEEGGVDAVMFE---NFFDAPFLKEVDPETVAAMAVIAGQLKSD-VSIPLGINVLRND----AVAALAIAMAVGA 103 (257)
T ss_pred HHHHHHHhCCCCEEEEe---cCCCCCCcCCCCHHHHHHHHHHHHHHHHh-cCCCeeeeeecCC----CHHHHHHHHHhCC
Confidence 34788999999999983 3433222 1222 23454 6777 34544 44 4666899999
Q ss_pred CEEEEe---ccCCCH-----HHHHHHHHHHHHcCC--cEEEEeC----------CHHH-HHHHhcccCCcEEEeeccccc
Q 015424 263 DAVLLI---AAVLPD-----LDIRYMTKICKLLGL--TALVEVH----------DERE-MDRVLGIEGIELIGINNRNLA 321 (407)
Q Consensus 263 DaVLLi---aaiL~~-----~~L~~Li~~a~~LGL--~aLVEVh----------t~eE-lerAl~l~Ga~iIGINnRdL~ 321 (407)
|-|=.. -+..++ ....+++++-+++|- ..|.+|| +.+| +..+..-..+|-|-++...
T Consensus 104 ~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~~~l~~~~~~e~a~~~~~~~~aDavivtG~~-- 181 (257)
T TIGR00259 104 KFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILADIVVKHAVHLGNRDLESIALDTVERGLADAVILSGKT-- 181 (257)
T ss_pred CEEEEccEeeeEecccccccccHHHHHHHHHHcCCCcEEEeceeecccCcCCCCCHHHHHHHHHHhcCCCEEEECcCC--
Confidence 987652 112222 256677777777653 3344443 4444 4444443248888775431
Q ss_pred cccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCC-----hHHH
Q 015424 322 ISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD-----PGKG 396 (407)
Q Consensus 322 ~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~d-----p~~~ 396 (407)
+.-+.|++...++.+. . .+.+++..||+ |++.+..+.+. +||+.||+++-++.+ -..+
T Consensus 182 --------TG~~~d~~~l~~vr~~-----~--~~~PvllggGv-t~eNv~e~l~~-adGviVgS~~K~~G~~~n~~D~~r 244 (257)
T TIGR00259 182 --------TGTEVDLELLKLAKET-----V--KDTPVLAGSGV-NLENVEELLSI-ADGVIVATTIKKDGVFNNFVDQAR 244 (257)
T ss_pred --------CCCCCCHHHHHHHHhc-----c--CCCeEEEECCC-CHHHHHHHHhh-CCEEEECCCcccCCccCCCcCHHH
Confidence 2234566666555432 1 25689999999 99999999988 999999999986442 2345
Q ss_pred HHhhhc
Q 015424 397 ITGLFG 402 (407)
Q Consensus 397 i~~L~~ 402 (407)
+++|+.
T Consensus 245 V~~Fm~ 250 (257)
T TIGR00259 245 VSQFVE 250 (257)
T ss_pred HHHHHH
Confidence 666654
No 174
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.54 E-value=0.00069 Score=67.33 Aligned_cols=79 Identities=15% Similarity=0.280 Sum_probs=62.4
Q ss_pred CCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCH
Q 015424 288 GLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTP 367 (407)
Q Consensus 288 GL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~ 367 (407)
++..-|||||.+|+..|+++ |+|+|..-|-. ++...++.+.+ +.++++++.||| ++
T Consensus 189 ~~~I~VEv~tleea~eA~~~-gaD~I~LD~~~----------------~e~l~~~v~~~------~~~i~leAsGGI-t~ 244 (277)
T PRK05742 189 GKPVEVEVESLDELRQALAA-GADIVMLDELS----------------LDDMREAVRLT------AGRAKLEASGGI-NE 244 (277)
T ss_pred CCeEEEEeCCHHHHHHHHHc-CCCEEEECCCC----------------HHHHHHHHHHh------CCCCcEEEECCC-CH
Confidence 47788999999999999997 99999884332 23445555432 136789999999 89
Q ss_pred HHHHHHHHcCCCEEEEcccccCC
Q 015424 368 DDIAYVQEAGVKAVLVGESIVKQ 390 (407)
Q Consensus 368 eD~~~l~~~GadaVLVGeaLmk~ 390 (407)
+++..+.+.|+|++.+|.-....
T Consensus 245 ~ni~~~a~tGvD~Isvg~lt~s~ 267 (277)
T PRK05742 245 STLRVIAETGVDYISIGAMTKDV 267 (277)
T ss_pred HHHHHHHHcCCCEEEEChhhcCC
Confidence 99999999999999999855443
No 175
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.53 E-value=0.00045 Score=66.72 Aligned_cols=96 Identities=17% Similarity=0.162 Sum_probs=76.0
Q ss_pred EEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHH
Q 015424 292 LVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIA 371 (407)
Q Consensus 292 LVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~ 371 (407)
++..++..|+-+.+...|++-|-|.+++-++ ..-..|++...++.+. -++++++-|||++.+|++
T Consensus 26 ~~~~~d~~~~a~~~~~~G~~~i~i~dl~~~~-------~~~~~~~~~i~~i~~~--------~~ipv~~~GGi~s~~~~~ 90 (253)
T PRK02083 26 LRDAGDPVELAKRYNEEGADELVFLDITASS-------EGRDTMLDVVERVAEQ--------VFIPLTVGGGIRSVEDAR 90 (253)
T ss_pred eeecCCHHHHHHHHHHcCCCEEEEEeCCccc-------ccCcchHHHHHHHHHh--------CCCCEEeeCCCCCHHHHH
Confidence 3567788888777755699999998887521 1235677777777654 257899999999999999
Q ss_pred HHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 372 YVQEAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 372 ~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
++.+.|+++|.+|+++++.++..+.+.+.++
T Consensus 91 ~~l~~Ga~~Viigt~~l~~p~~~~ei~~~~g 121 (253)
T PRK02083 91 RLLRAGADKVSINSAAVANPELISEAADRFG 121 (253)
T ss_pred HHHHcCCCEEEEChhHhhCcHHHHHHHHHcC
Confidence 9999999999999999999887777777664
No 176
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=97.53 E-value=0.0004 Score=67.37 Aligned_cols=93 Identities=17% Similarity=0.152 Sum_probs=70.8
Q ss_pred eCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHH
Q 015424 295 VHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQ 374 (407)
Q Consensus 295 Vht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~ 374 (407)
..++.|+-+.....|++-+-+.+.+-++ +....|++...++.+. .++++.+.|||++.+|+.++.
T Consensus 29 ~~dp~~~a~~~~~~G~~~l~v~Dl~~~~-------~~~~~n~~~i~~i~~~--------~~~pv~~~GGi~s~~d~~~~~ 93 (254)
T TIGR00735 29 AGDPVELAQRYDEEGADELVFLDITASS-------EGRTTMIDVVERTAET--------VFIPLTVGGGIKSIEDVDKLL 93 (254)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCccc-------ccChhhHHHHHHHHHh--------cCCCEEEECCCCCHHHHHHHH
Confidence 4467666555544588877777665421 2344677777777664 357899999999999999999
Q ss_pred HcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 375 EAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 375 ~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
.+|+++|+||+++++.++..+.+.+.++
T Consensus 94 ~~Ga~~vivgt~~~~~p~~~~~~~~~~~ 121 (254)
T TIGR00735 94 RAGADKVSINTAAVKNPELIYELADRFG 121 (254)
T ss_pred HcCCCEEEEChhHhhChHHHHHHHHHcC
Confidence 9999999999999998887777776665
No 177
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.52 E-value=0.0019 Score=64.09 Aligned_cols=135 Identities=13% Similarity=0.103 Sum_probs=84.9
Q ss_pred HHHHHcCCCEEEEecc-------CCCH-----------------HHHHHHHHHHHH-c--CCcEEEEeC---------CH
Q 015424 255 YYARTKGADAVLLIAA-------VLPD-----------------LDIRYMTKICKL-L--GLTALVEVH---------DE 298 (407)
Q Consensus 255 ~eAr~~GADaVLLiaa-------iL~~-----------------~~L~~Li~~a~~-L--GL~aLVEVh---------t~ 298 (407)
..|..+|+|+|=|.++ .|++ .-+.+.++.+++ + ++...|-++ +.
T Consensus 148 ~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~ 227 (327)
T cd02803 148 RRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTL 227 (327)
T ss_pred HHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCH
Confidence 4467889999988765 1111 112344444444 4 445566555 34
Q ss_pred HHH----HHHhcccCCcEEEeeccccccccccccc--cccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHH
Q 015424 299 REM----DRVLGIEGIELIGINNRNLAISIFSYRT--ETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAY 372 (407)
Q Consensus 299 eEl----erAl~l~Ga~iIGINnRdL~~~~~~~t~--~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~ 372 (407)
+|. +.+.++ |+++|-+.++....+.....+ .....+++....+.+. .++++++.|||.|++++..
T Consensus 228 ~e~~~la~~l~~~-G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~--------~~iPVi~~Ggi~t~~~a~~ 298 (327)
T cd02803 228 EEAIEIAKALEEA-GVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKA--------VKIPVIAVGGIRDPEVAEE 298 (327)
T ss_pred HHHHHHHHHHHHc-CCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHH--------CCCCEEEeCCCCCHHHHHH
Confidence 443 334444 899999987765111000000 0012334444445443 2578999999999999999
Q ss_pred HHHc-CCCEEEEcccccCCCChHHHHH
Q 015424 373 VQEA-GVKAVLVGESIVKQDDPGKGIT 398 (407)
Q Consensus 373 l~~~-GadaVLVGeaLmk~~dp~~~i~ 398 (407)
+.+. |+|.|-+|.+++..+|....++
T Consensus 299 ~l~~g~aD~V~igR~~ladP~l~~k~~ 325 (327)
T cd02803 299 ILAEGKADLVALGRALLADPDLPNKAR 325 (327)
T ss_pred HHHCCCCCeeeecHHHHhCccHHHHHh
Confidence 9998 7999999999999999887765
No 178
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=97.51 E-value=0.00044 Score=70.79 Aligned_cols=104 Identities=18% Similarity=0.263 Sum_probs=72.5
Q ss_pred CCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHH
Q 015424 225 GSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRV 304 (407)
Q Consensus 225 Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVht~eElerA 304 (407)
.++++|+.+|+. .++||+.|.. +++..+..+.++|+|+|.+--.= .-+
T Consensus 212 ~~w~~i~~~~~~-~~~pvivKgv-~~~~da~~~~~~G~~~i~vs~hG--Gr~---------------------------- 259 (356)
T PF01070_consen 212 LTWDDIEWIRKQ-WKLPVIVKGV-LSPEDAKRAVDAGVDGIDVSNHG--GRQ---------------------------- 259 (356)
T ss_dssp -SHHHHHHHHHH-CSSEEEEEEE--SHHHHHHHHHTT-SEEEEESGT--GTS----------------------------
T ss_pred CCHHHHHHHhcc-cCCceEEEec-ccHHHHHHHHhcCCCEEEecCCC--ccc----------------------------
Confidence 368999999997 8999999997 99999999999999998884321 111
Q ss_pred hcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEc
Q 015424 305 LGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVG 384 (407)
Q Consensus 305 l~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVG 384 (407)
++. | . .|+ +...++... + +.++.+++.|||.+..|+.+...+||++|.||
T Consensus 260 ~d~-~----------~---------~~~----~~L~~i~~~-----~-~~~~~i~~dgGir~g~Dv~kalaLGA~~v~ig 309 (356)
T PF01070_consen 260 LDW-G----------P---------PTI----DALPEIRAA-----V-GDDIPIIADGGIRRGLDVAKALALGADAVGIG 309 (356)
T ss_dssp STT-S--------------------BHH----HHHHHHHHH-----H-TTSSEEEEESS--SHHHHHHHHHTT-SEEEES
T ss_pred Ccc-c----------c---------ccc----cccHHHHhh-----h-cCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEc
Confidence 111 1 1 121 122233332 1 34689999999999999999999999999999
Q ss_pred ccccCC
Q 015424 385 ESIVKQ 390 (407)
Q Consensus 385 eaLmk~ 390 (407)
..++..
T Consensus 310 r~~l~~ 315 (356)
T PF01070_consen 310 RPFLYA 315 (356)
T ss_dssp HHHHHH
T ss_pred cHHHHH
Confidence 988764
No 179
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=97.51 E-value=0.0049 Score=63.92 Aligned_cols=151 Identities=17% Similarity=0.098 Sum_probs=89.2
Q ss_pred CCcEEeccccC-CHHHHHH----HHHcCCCEEEEeccCC--------------CHHHHHHHHHHHHH-cCCcEEEEeC--
Q 015424 239 KCPLLCKEFIV-DAWQIYY----ARTKGADAVLLIAAVL--------------PDLDIRYMTKICKL-LGLTALVEVH-- 296 (407)
Q Consensus 239 ~lPVL~KDFIi-d~~QI~e----Ar~~GADaVLLiaaiL--------------~~~~L~~Li~~a~~-LGL~aLVEVh-- 296 (407)
+.||+..=+.. ++.++.+ ...+|||+|=|..+.- .++.+.++++..++ ....++|-+.
T Consensus 99 ~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~ 178 (420)
T PRK08318 99 DRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTPN 178 (420)
T ss_pred CceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcCCC
Confidence 47776543333 3443222 2457999999986631 33456677777665 3566666555
Q ss_pred --CHHHHHHHhcccCCcEEEeeccccccc--------------c----ccccccc-cccCchhHHHHhhcccccccccCC
Q 015424 297 --DEREMDRVLGIEGIELIGINNRNLAIS--------------I----FSYRTET-FEVDNSNTKKLLEGERGEIIRQKN 355 (407)
Q Consensus 297 --t~eElerAl~l~Ga~iIGINnRdL~~~--------------~----~~~t~~T-f~vDl~~t~~L~~~~~~~~i~~~~ 355 (407)
+..++-+++...|++-|-..|+-..-. + .+|+..- ..+.++...++.+. ....+
T Consensus 179 ~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~-----~~~~~ 253 (420)
T PRK08318 179 ITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARD-----PETRG 253 (420)
T ss_pred cccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhc-----cccCC
Confidence 445554444334888666544422000 0 0111111 11233444444332 10025
Q ss_pred ceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccC-CCChH
Q 015424 356 IIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK-QDDPG 394 (407)
Q Consensus 356 v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk-~~dp~ 394 (407)
+++|+-|||.|.+|+.+++.+||++|-||++++. +++..
T Consensus 254 ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~gp~ii 293 (420)
T PRK08318 254 LPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQYGFRIV 293 (420)
T ss_pred CCEEeecCcCCHHHHHHHHHhCCChheeeeeeccCCchhH
Confidence 8999999999999999999999999999999998 55543
No 180
>PLN02979 glycolate oxidase
Probab=97.50 E-value=0.00045 Score=71.07 Aligned_cols=102 Identities=19% Similarity=0.271 Sum_probs=72.6
Q ss_pred CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHh
Q 015424 226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVL 305 (407)
Q Consensus 226 s~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl 305 (407)
+.+||+.+|+. .++||+.|.. .++.....+.++|+|+|.+--. ...+ +
T Consensus 211 tW~dl~wlr~~-~~~PvivKgV-~~~~dA~~a~~~Gvd~I~Vsnh--GGrq----------------------------l 258 (366)
T PLN02979 211 SWKDVQWLQTI-TKLPILVKGV-LTGEDARIAIQAGAAGIIVSNH--GARQ----------------------------L 258 (366)
T ss_pred CHHHHHHHHhc-cCCCEEeecC-CCHHHHHHHHhcCCCEEEECCC--CcCC----------------------------C
Confidence 57999999986 8999999996 6788888999999999955321 1100 0
Q ss_pred cccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcc
Q 015424 306 GIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGE 385 (407)
Q Consensus 306 ~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGe 385 (407)
+. . . .|+ ....++.+. + ...+.+++-|||.+..|+.+...+||++|.||.
T Consensus 259 d~-~----------p---------~t~----~~L~ei~~~-----~-~~~~~Vi~dGGIr~G~Di~KALALGAdaV~iGr 308 (366)
T PLN02979 259 DY-V----------P---------ATI----SALEEVVKA-----T-QGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 308 (366)
T ss_pred CC-c----------h---------hHH----HHHHHHHHH-----h-CCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcH
Confidence 00 0 0 111 111222221 1 135789999999999999999999999999999
Q ss_pred cccC
Q 015424 386 SIVK 389 (407)
Q Consensus 386 aLmk 389 (407)
.++.
T Consensus 309 p~L~ 312 (366)
T PLN02979 309 PVVF 312 (366)
T ss_pred HHHH
Confidence 8874
No 181
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=97.50 E-value=0.0094 Score=57.33 Aligned_cols=174 Identities=15% Similarity=0.165 Sum_probs=102.9
Q ss_pred CHHHHHHHHHHcCCcEEEEEe-cCCcCCCCHHHHHHHHhcCCCCcEE--e--ccccCCHHH-HHHHHHcCCCEEEEeccC
Q 015424 198 DPVEIARSYEKGGAACLSILT-DEKYFKGSFENLEAVRSAGVKCPLL--C--KEFIVDAWQ-IYYARTKGADAVLLIAAV 271 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLT-d~~~F~Gs~edL~~Vr~a~v~lPVL--~--KDFIid~~Q-I~eAr~~GADaVLLiaai 271 (407)
+..+..+..++.|...+++=. ++.|...+++.++.+++. +.+++ . -|..-.++. +..+..+|||.+.+-. .
T Consensus 13 ~~~~~l~~~~~~~~~~~~ikvg~~~f~~~G~~~i~~l~~~--~~~i~~D~Kl~Di~~t~~~~i~~~~~~gad~itvH~-~ 89 (230)
T PRK00230 13 SKEEALAFLDQLDPAVLFVKVGMELFTAGGPQFVRELKQR--GFKVFLDLKLHDIPNTVAKAVRALAKLGVDMVNVHA-S 89 (230)
T ss_pred CHHHHHHHHHhcCCcccEEEEcHHHHHhcCHHHHHHHHhc--CCCEEEEeehhhccccHHHHHHHHHHcCCCEEEEcc-c
Confidence 455556666676765555433 344444668888899874 34444 2 356656665 5557889999998865 3
Q ss_pred CCHHHHHHHHHHHHHc--CCcEEEEe---CCHHHHHH-----------------HhcccCCcEEEeeccccccccccccc
Q 015424 272 LPDLDIRYMTKICKLL--GLTALVEV---HDEREMDR-----------------VLGIEGIELIGINNRNLAISIFSYRT 329 (407)
Q Consensus 272 L~~~~L~~Li~~a~~L--GL~aLVEV---ht~eEler-----------------Al~l~Ga~iIGINnRdL~~~~~~~t~ 329 (407)
-+.+.++.+.+.++.. +....|.+ .+.+++.. +.++ |++.+-.
T Consensus 90 ag~~~i~~~~~~~~~~~~~~~~~V~~lts~~~~~l~~~~~~~~~~~~v~~~a~~a~~~-g~dgvv~-------------- 154 (230)
T PRK00230 90 GGPRMMKAAREALEPKSRPLLIAVTVLTSMDEEDLAELGINLSLEEQVLRLAKLAQEA-GLDGVVC-------------- 154 (230)
T ss_pred CCHHHHHHHHHHhhccCCCeEEEEEECCCCCHHHHHhCcCCCCHHHHHHHHHHHHHHc-CCeEEEe--------------
Confidence 4556788888776653 33444442 23344431 0111 2221111
Q ss_pred cccccCchhHHHHhhcccccccccCCceEEEeeCCCCHH-----------HHHHHHHcCCCEEEEcccccCCCChHHHHH
Q 015424 330 ETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPD-----------DIAYVQEAGVKAVLVGESIVKQDDPGKGIT 398 (407)
Q Consensus 330 ~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~e-----------D~~~l~~~GadaVLVGeaLmk~~dp~~~i~ 398 (407)
.......+.+. . +.+ ....-.||. ++ .+..+.+.|++.++||.+|++++||.++++
T Consensus 155 -----~~~~~~~ir~~-----~-~~~-~~~v~pGI~-~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~~a~dP~~~a~ 221 (230)
T PRK00230 155 -----SAQEAAAIREA-----T-GPD-FLLVTPGIR-PAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQAADPAAAYE 221 (230)
T ss_pred -----ChHHHHHHHhh-----c-CCc-eEEEcCCcC-CCCCCcchHHHHhCHHHHHHcCCCEEEECCcccCCCCHHHHHH
Confidence 11111222221 1 223 334457885 43 466777899999999999999999999998
Q ss_pred hhhc
Q 015424 399 GLFG 402 (407)
Q Consensus 399 ~L~~ 402 (407)
++..
T Consensus 222 ~i~~ 225 (230)
T PRK00230 222 AILA 225 (230)
T ss_pred HHHH
Confidence 8864
No 182
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=97.48 E-value=0.0021 Score=64.75 Aligned_cols=132 Identities=17% Similarity=0.103 Sum_probs=81.3
Q ss_pred CCCEEEEeccCC---------CHHHHHHHHHHHHH-cC-----CcEEEEeC---C---HHHHHHHhcccCCcEEEeeccc
Q 015424 261 GADAVLLIAAVL---------PDLDIRYMTKICKL-LG-----LTALVEVH---D---EREMDRVLGIEGIELIGINNRN 319 (407)
Q Consensus 261 GADaVLLiaaiL---------~~~~L~~Li~~a~~-LG-----L~aLVEVh---t---~eElerAl~l~Ga~iIGINnRd 319 (407)
+||++-|..+.- ..+.+.++++..++ .+ +.++|-+. + ..++-+++...|++.|-+.|+-
T Consensus 160 ~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~ 239 (327)
T cd04738 160 YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTT 239 (327)
T ss_pred hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 499999987533 23566777777664 33 66676664 2 2333333332499988887763
Q ss_pred ccccc----------cccccc-ccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEccccc
Q 015424 320 LAISI----------FSYRTE-TFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIV 388 (407)
Q Consensus 320 L~~~~----------~~~t~~-Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLm 388 (407)
..... .+|+.. .....++...++.+. + +.++.+|+.|||.|++|+.++..+|||+|-||++++
T Consensus 240 ~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~-----~-~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~ 313 (327)
T cd04738 240 ISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKL-----T-GGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLV 313 (327)
T ss_pred ccccccccccccCCCCccCChhhhHHHHHHHHHHHHH-----h-CCCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHHH
Confidence 21000 011110 011223333444332 1 235899999999999999999999999999999997
Q ss_pred C-CCChHHHHH
Q 015424 389 K-QDDPGKGIT 398 (407)
Q Consensus 389 k-~~dp~~~i~ 398 (407)
. +++....+.
T Consensus 314 ~~gP~~~~~i~ 324 (327)
T cd04738 314 YEGPGLVKRIK 324 (327)
T ss_pred hhCcHHHHHHH
Confidence 6 477665553
No 183
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=97.47 E-value=0.00053 Score=65.58 Aligned_cols=92 Identities=17% Similarity=0.175 Sum_probs=68.9
Q ss_pred CCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHH
Q 015424 296 HDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQE 375 (407)
Q Consensus 296 ht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~ 375 (407)
.+..|+-+.+.-.|++-|-+.+++..+ +.-..|++...++.+. .++++++.|||.+.+|++++.+
T Consensus 27 ~d~~~~a~~~~~~G~~~i~i~d~~~~~-------~~~~~~~~~i~~i~~~--------~~~pv~~~GGI~s~~d~~~~l~ 91 (243)
T cd04731 27 GDPVELAKRYNEQGADELVFLDITASS-------EGRETMLDVVERVAEE--------VFIPLTVGGGIRSLEDARRLLR 91 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEEcCCccc-------ccCcccHHHHHHHHHh--------CCCCEEEeCCCCCHHHHHHHHH
Confidence 366666555543488877777766521 2234577777777664 2578999999999999999999
Q ss_pred cCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 376 AGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 376 ~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
.|+++|.+|+++++.++....+.+.++
T Consensus 92 ~G~~~v~ig~~~~~~p~~~~~i~~~~~ 118 (243)
T cd04731 92 AGADKVSINSAAVENPELIREIAKRFG 118 (243)
T ss_pred cCCceEEECchhhhChHHHHHHHHHcC
Confidence 999999999999998887666665554
No 184
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=97.46 E-value=0.0011 Score=67.47 Aligned_cols=114 Identities=15% Similarity=0.176 Sum_probs=81.9
Q ss_pred HHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCce
Q 015424 278 RYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNII 357 (407)
Q Consensus 278 ~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~ 357 (407)
..+++..+++|.-++.-|-+..++.++.++ |++.|=...-+--|| +.. ...++ .+..|++.+... + +.++
T Consensus 117 ~~~i~~~~~~g~~v~~~v~~~~~A~~~~~~-G~d~vI~~g~eAGGH----~g~-~~~~~-~t~~Lv~ev~~~-~--~~iP 186 (336)
T COG2070 117 AEFVARLKAAGIKVIHSVITVREALKAERA-GADAVIAQGAEAGGH----RGG-VDLEV-STFALVPEVVDA-V--DGIP 186 (336)
T ss_pred HHHHHHHHHcCCeEEEEeCCHHHHHHHHhC-CCCEEEecCCcCCCc----CCC-CCCCc-cHHHHHHHHHHH-h--cCCC
Confidence 446788889999999999999999999998 999887766544222 111 11122 234555543321 2 2289
Q ss_pred EEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCC--hHHHHHhhh
Q 015424 358 VVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD--PGKGITGLF 401 (407)
Q Consensus 358 vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~d--p~~~i~~L~ 401 (407)
||+.|||.+.+++..+..+||++|.+|+.++-... .....|+.+
T Consensus 187 ViAAGGI~dg~~i~AAlalGA~gVq~GT~Fl~t~Ea~a~~~~K~~l 232 (336)
T COG2070 187 VIAAGGIADGRGIAAALALGADGVQMGTRFLATKEADASDAYKQAL 232 (336)
T ss_pred EEEecCccChHHHHHHHHhccHHHHhhhhhhcccccCCCHHHHHHH
Confidence 99999999999999999999999999999986543 234555554
No 185
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=97.46 E-value=0.00092 Score=65.49 Aligned_cols=140 Identities=14% Similarity=0.094 Sum_probs=86.2
Q ss_pred HHHcCCCEEEEeccCC------CHHHHHHHHHHHHHcCCcEEEEeCCHHHHHH--------------Hhc------ccCC
Q 015424 257 ARTKGADAVLLIAAVL------PDLDIRYMTKICKLLGLTALVEVHDEREMDR--------------VLG------IEGI 310 (407)
Q Consensus 257 Ar~~GADaVLLiaaiL------~~~~L~~Li~~a~~LGL~aLVEVht~eEler--------------Al~------l~Ga 310 (407)
.+++|++.|+|+++=. +++.+..=++.|.+.||.++++|-...|-.. ++. + ..
T Consensus 82 Lkd~G~~~viiGHSERR~~f~Etd~~v~~K~~~a~~~gl~pIvCiGEt~~~r~~g~~~~v~~~Ql~~~l~~~~~~~~-~~ 160 (250)
T PRK00042 82 LKDLGVKYVIIGHSERRQYFGETDELVNKKVKAALKAGLTPILCVGETLEEREAGKTEEVVARQLEAALAGLSAEQF-AN 160 (250)
T ss_pred HHHCCCCEEEeCcccccCccCcCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCChHHHHHHHHHHHHccCCHHHh-CC
Confidence 4677999999999822 2333333334488999999999986443222 221 1 22
Q ss_pred cEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015424 311 ELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 390 (407)
Q Consensus 311 ~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~ 390 (407)
.+|.....=.||||..-++...+--.....+.+....+ .. ..++.++..|+|+.-.+...+...|+||+|||.+-++.
T Consensus 161 ~vIAYEPvWAIGtG~~as~~~~~~v~~~Ir~~l~~~~~-~~-~~~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl~~ 238 (250)
T PRK00042 161 LVIAYEPVWAIGTGKTATPEQAQEVHAFIRAVLAELYG-EV-AEKVRILYGGSVKPDNAAELMAQPDIDGALVGGASLKA 238 (250)
T ss_pred EEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcc-cc-cCCceEEEcCCCCHHHHHHHhcCCCCCEEEEeeeeech
Confidence 46777766666654433222111101111111111000 01 24578999999977777777888999999999999999
Q ss_pred CChHHHHHh
Q 015424 391 DDPGKGITG 399 (407)
Q Consensus 391 ~dp~~~i~~ 399 (407)
+++.+.++.
T Consensus 239 ~~f~~ii~~ 247 (250)
T PRK00042 239 EDFLAIVKA 247 (250)
T ss_pred HHHHHHHHH
Confidence 888777654
No 186
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=97.45 E-value=0.0023 Score=65.28 Aligned_cols=126 Identities=13% Similarity=0.091 Sum_probs=85.4
Q ss_pred HHHHHHHc--CCCEEEEeccCCCHHHHHHHHHHHHHc--CCcEEEE-eCCHHHHHHHhcccCCcEEEeeccccccccccc
Q 015424 253 QIYYARTK--GADAVLLIAAVLPDLDIRYMTKICKLL--GLTALVE-VHDEREMDRVLGIEGIELIGINNRNLAISIFSY 327 (407)
Q Consensus 253 QI~eAr~~--GADaVLLiaaiL~~~~L~~Li~~a~~L--GL~aLVE-Vht~eElerAl~l~Ga~iIGINnRdL~~~~~~~ 327 (407)
.+.+..++ |+|.|.++.+-=-.....++++..++. +..++.- |-|.+.++.++++ |||.|=|. ++||..-
T Consensus 111 r~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~a-GAD~ikVg----iGpGSic 185 (343)
T TIGR01305 111 KMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILS-GADIVKVG----IGPGSVC 185 (343)
T ss_pred HHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHc-CCCEEEEc----ccCCCcc
Confidence 45555565 599999998866444555666666653 7888888 9999999999997 99976442 1222222
Q ss_pred cccc---cc-cCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEccccc
Q 015424 328 RTET---FE-VDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIV 388 (407)
Q Consensus 328 t~~T---f~-vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLm 388 (407)
++.- .. +-+....+..+.. ...++.+|+-|||++.-|+.+...+|||+|.+|.-+-
T Consensus 186 ttR~~~Gvg~pqltAv~~~a~aa-----~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llA 245 (343)
T TIGR01305 186 TTRTKTGVGYPQLSAVIECADAA-----HGLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFA 245 (343)
T ss_pred cCceeCCCCcCHHHHHHHHHHHh-----ccCCCeEEEcCCcCchhHHHHHHHcCCCEEEECHhhh
Confidence 1111 11 2222333333321 1236899999999999999999999999999995543
No 187
>PLN02429 triosephosphate isomerase
Probab=97.44 E-value=0.001 Score=67.26 Aligned_cols=141 Identities=10% Similarity=0.047 Sum_probs=88.5
Q ss_pred HHHcCCCEEEEeccC----C--CHHHHHHHHHHHHHcCCcEEEEeCCHH--------------HHHHHhcccCCc----E
Q 015424 257 ARTKGADAVLLIAAV----L--PDLDIRYMTKICKLLGLTALVEVHDER--------------EMDRVLGIEGIE----L 312 (407)
Q Consensus 257 Ar~~GADaVLLiaai----L--~~~~L~~Li~~a~~LGL~aLVEVht~e--------------ElerAl~l~Ga~----i 312 (407)
.+++|+..|+|+++= + +++.+..=+..|.+.||.++++|-... +++.+++. -.+ +
T Consensus 143 Lkd~Gv~~ViiGHSERR~~f~Etd~~V~~Kv~~al~~GL~pIvCIGE~l~ere~g~t~~vi~~Ql~~~l~~-v~~~~~iv 221 (315)
T PLN02429 143 LKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADA-VPSWDNIV 221 (315)
T ss_pred HHHcCCCEEEeCccccCCCCCcCHHHHHHHHHHHHHCcCEEEEEcCCCHHHHhCCCHHHHHHHHHHHHHcc-CCcccceE
Confidence 456799999999982 2 223333333348889999999999754 56666653 123 6
Q ss_pred EEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCC
Q 015424 313 IGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD 392 (407)
Q Consensus 313 IGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~d 392 (407)
|.....-.||+|...++...+--.....+.+....+..+ .+++.++..|+|+.-.+...+...++||+|||.+-++.++
T Consensus 222 IAYEPvWAIGTGk~as~e~~~~v~~~IR~~l~~~~~~~v-a~~irILYGGSV~~~N~~el~~~~diDG~LVGgASL~~~~ 300 (315)
T PLN02429 222 VAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEV-ASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPE 300 (315)
T ss_pred EEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhhhhh-ccCceEEEcCccCHHHHHHHhcCCCCCEEEeecceecHHH
Confidence 666666666655543333221111111111111001111 2467899999997777777777899999999999999888
Q ss_pred hHHHHHh
Q 015424 393 PGKGITG 399 (407)
Q Consensus 393 p~~~i~~ 399 (407)
..+-+..
T Consensus 301 F~~Ii~~ 307 (315)
T PLN02429 301 FATIVNS 307 (315)
T ss_pred HHHHHHH
Confidence 7776654
No 188
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=97.44 E-value=0.0022 Score=60.22 Aligned_cols=159 Identities=18% Similarity=0.187 Sum_probs=94.2
Q ss_pred CCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCc-EEe--ccccC--C-----HHHHHHHHHcCCCEEE
Q 015424 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCP-LLC--KEFIV--D-----AWQIYYARTKGADAVL 266 (407)
Q Consensus 197 ~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lP-VL~--KDFIi--d-----~~QI~eAr~~GADaVL 266 (407)
.++.++++...++|++++.| ++..++.++....+.+ +++ -+|=. . -.++.+|...|||.|-
T Consensus 17 ~~i~~~~~~a~~~~~~av~v---------~p~~v~~~~~~l~~~~~~v~~~~~fp~g~~~~~~k~~eve~A~~~GAdevd 87 (203)
T cd00959 17 EDIRKLCDEAKEYGFAAVCV---------NPCFVPLAREALKGSGVKVCTVIGFPLGATTTEVKVAEAREAIADGADEID 87 (203)
T ss_pred HHHHHHHHHHHHcCCCEEEE---------cHHHHHHHHHHcCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHcCCCEEE
Confidence 35666777778889999888 3667777765311222 332 12211 1 1268889999999998
Q ss_pred EeccCC---CH------HHHHHHHHHHHHcCCcEEEEeC--CHHHHHHH----hcccCCcEEEeeccccccccccccccc
Q 015424 267 LIAAVL---PD------LDIRYMTKICKLLGLTALVEVH--DEREMDRV----LGIEGIELIGINNRNLAISIFSYRTET 331 (407)
Q Consensus 267 LiaaiL---~~------~~L~~Li~~a~~LGL~aLVEVh--t~eElerA----l~l~Ga~iIGINnRdL~~~~~~~t~~T 331 (407)
+..-+- +. +++.++.+.|+..-+.+++|.. +.+++.++ .++ |+|+|=+. |||..
T Consensus 88 vv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~-GaD~IKTs------TG~~~---- 156 (203)
T cd00959 88 MVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEA-GADFIKTS------TGFGP---- 156 (203)
T ss_pred EeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHh-CCCEEEcC------CCCCC----
Confidence 865532 21 2333334434312244467776 44555444 455 88888773 22221
Q ss_pred cccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEE
Q 015424 332 FEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAV 381 (407)
Q Consensus 332 f~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaV 381 (407)
-...++....+.+.+ ...+.+.+.|||+|.+++..+..+|++-+
T Consensus 157 ~~at~~~v~~~~~~~------~~~v~ik~aGGikt~~~~l~~~~~g~~ri 200 (203)
T cd00959 157 GGATVEDVKLMKEAV------GGRVGVKAAGGIRTLEDALAMIEAGATRI 200 (203)
T ss_pred CCCCHHHHHHHHHHh------CCCceEEEeCCCCCHHHHHHHHHhChhhc
Confidence 113333333333331 23578999999999999999999998753
No 189
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.44 E-value=0.014 Score=58.41 Aligned_cols=177 Identities=14% Similarity=0.133 Sum_probs=116.6
Q ss_pred HHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHH----HHhcCCCCcEE-eccccCCHHHHHHHHHcCCCEEEEeccCCCH
Q 015424 200 VEIARSYEKGGAACLSILTDEKYFKGSFENLEA----VRSAGVKCPLL-CKEFIVDAWQIYYARTKGADAVLLIAAVLPD 274 (407)
Q Consensus 200 ~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~----Vr~a~v~lPVL-~KDFIid~~QI~eAr~~GADaVLLiaaiL~~ 274 (407)
..+.+++++.++..|--++........++.+.. ..+. .++||- .-|-..+...+.+|..+|.+.|.++.+-++.
T Consensus 32 ~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~-~~vPV~lHLDH~~~~e~i~~Ai~~GftSVM~DgS~l~~ 110 (283)
T PRK07998 32 ISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADK-MDVPVSLHLDHGKTFEDVKQAVRAGFTSVMIDGAALPF 110 (283)
T ss_pred HHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHH-CCCCEEEECcCCCCHHHHHHHHHcCCCEEEEeCCCCCH
Confidence 344555555555544433332222223443332 2232 478874 6677777888999999999999999999976
Q ss_pred H----HHHHHHHHHHHcCCcEEEE-----------------eCCHHHHHHHhcccCCcEEEeeccccccccccccccccc
Q 015424 275 L----DIRYMTKICKLLGLTALVE-----------------VHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFE 333 (407)
Q Consensus 275 ~----~L~~Li~~a~~LGL~aLVE-----------------Vht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~ 333 (407)
+ ..++++++||.+|+.+=.| -.+.+|+.+..+..|+|.+.+..-+. || .|. ...
T Consensus 111 eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~--HG-~Y~--~p~ 185 (283)
T PRK07998 111 EENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNV--HG-LED--IPR 185 (283)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhcccc--cc-CCC--CCC
Confidence 3 4667888999998875222 24677777766534999988865544 22 232 256
Q ss_pred cCchhHHHHhhcccccccccCCceEEEeeCCC-CHHHHHHHHHcCCCEEEEcccccCC
Q 015424 334 VDNSNTKKLLEGERGEIIRQKNIIVVGESGLF-TPDDIAYVQEAGVKAVLVGESIVKQ 390 (407)
Q Consensus 334 vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~-t~eD~~~l~~~GadaVLVGeaLmk~ 390 (407)
.|++..+++.+. .++++|.=||=. +.++++++.++|+..|=||+.|...
T Consensus 186 l~~~~l~~I~~~--------~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~Tel~~a 235 (283)
T PRK07998 186 IDIPLLKRIAEV--------SPVPLVIHGGSGIPPEILRSFVNYKVAKVNIASDLRKA 235 (283)
T ss_pred cCHHHHHHHHhh--------CCCCEEEeCCCCCCHHHHHHHHHcCCcEEEECHHHHHH
Confidence 788888888664 245555544443 4488999999999999999988643
No 190
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.44 E-value=0.0038 Score=66.82 Aligned_cols=191 Identities=9% Similarity=0.018 Sum_probs=111.2
Q ss_pred CCCCCCHHHHHHHHHHcCCcEEEEEecCCcCCC--CHHHHHHHHhc-------CCCCcEEeccccCCHH-HHHHHHHcCC
Q 015424 193 LREDFDPVEIARSYEKGGAACLSILTDEKYFKG--SFENLEAVRSA-------GVKCPLLCKEFIVDAW-QIYYARTKGA 262 (407)
Q Consensus 193 i~~~~dp~~iA~ay~~~GA~aISVLTd~~~F~G--s~edL~~Vr~a-------~v~lPVL~KDFIid~~-QI~eAr~~GA 262 (407)
+.++.+..+..+.+.+.+...+=|+.+.+-.-| +..|+...+.. .-.+-|.+---.-+.. .+....++|+
T Consensus 176 v~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~~~P~a~~d~~grL~V~~av~~~~~~~ra~~Lv~aGv 255 (502)
T PRK07107 176 ANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHKENPLELLDSSKRYVVGAGINTRDYAERVPALVEAGA 255 (502)
T ss_pred ECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcccChhhhhhhccCeeeeeccChhhHHHHHHHHHHhCC
Confidence 356677888889999999999988876544444 44555544321 0112222211111222 3444567899
Q ss_pred CEEEEeccCCCHHHHHHHHHHHHH-cCCc-EEEE--eCCHHHHHHHhcccCCcEEEeecccccccccccccc-cccc---
Q 015424 263 DAVLLIAAVLPDLDIRYMTKICKL-LGLT-ALVE--VHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTE-TFEV--- 334 (407)
Q Consensus 263 DaVLLiaaiL~~~~L~~Li~~a~~-LGL~-aLVE--Vht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~-Tf~v--- 334 (407)
|.|.+..+---.....+.++..++ ++.. .+.- |-|.+.++.++++ ||+.|=|.+ ++|..-|+. -..+
T Consensus 256 d~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~a-GAd~I~vg~----g~Gs~c~tr~~~~~g~~ 330 (502)
T PRK07107 256 DVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEA-GADFVKVGI----GGGSICITREQKGIGRG 330 (502)
T ss_pred CeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHc-CCCEEEECC----CCCcCcccccccCCCcc
Confidence 999987443322222344444444 5532 2333 7899999999997 999876521 222222211 1111
Q ss_pred CchhHHHHhhcccccccc--cCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccC
Q 015424 335 DNSNTKKLLEGERGEIIR--QKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK 389 (407)
Q Consensus 335 Dl~~t~~L~~~~~~~~i~--~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk 389 (407)
-+....++....+. .+. ...+++|+-|||++.-|+.+...+|||+|.+|..|-.
T Consensus 331 ~~~ai~~~~~a~~~-~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag 386 (502)
T PRK07107 331 QATALIEVAKARDE-YFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFAR 386 (502)
T ss_pred HHHHHHHHHHHHHH-HHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhc
Confidence 11122222221000 000 1137999999999999999999999999999998865
No 191
>PRK08185 hypothetical protein; Provisional
Probab=97.43 E-value=0.027 Score=56.33 Aligned_cols=141 Identities=16% Similarity=0.209 Sum_probs=101.8
Q ss_pred CCCcEE-eccccCCHHHHHHHHHcCCCEEEEeccCCCHHHH----HHHHHHHHHcCCcE--------------EE---E-
Q 015424 238 VKCPLL-CKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDI----RYMTKICKLLGLTA--------------LV---E- 294 (407)
Q Consensus 238 v~lPVL-~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L----~~Li~~a~~LGL~a--------------LV---E- 294 (407)
.++||- .-|-..+..++.+|...|.+.|.+..+-|+.++- ++++++|+.+|+.+ .+ +
T Consensus 67 ~~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~ 146 (283)
T PRK08185 67 SPVPFVIHLDHGATIEDVMRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEI 146 (283)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccc
Confidence 478874 6788888999999999999999999999987543 44566667655443 11 1
Q ss_pred -eCCHHHHHHHhcccCCcEEEeecccccccccccccc-ccccCchhHHHHhhcccccccccCCceEEEeeCCCC-HHHHH
Q 015424 295 -VHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTE-TFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFT-PDDIA 371 (407)
Q Consensus 295 -Vht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~-Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t-~eD~~ 371 (407)
.|+.+|+.++.+..|+|.+++.--+. .+. |.+. ....|++...++.+. -++++|.-||+.. .++++
T Consensus 147 ~~t~peea~~f~~~TgvD~LAvaiGt~-HG~--y~~~~kp~L~~e~l~~I~~~--------~~iPLVlHGgsg~~~e~~~ 215 (283)
T PRK08185 147 IYTDPEQAEDFVSRTGVDTLAVAIGTA-HGI--YPKDKKPELQMDLLKEINER--------VDIPLVLHGGSANPDAEIA 215 (283)
T ss_pred cCCCHHHHHHHHHhhCCCEEEeccCcc-cCC--cCCCCCCCcCHHHHHHHHHh--------hCCCEEEECCCCCCHHHHH
Confidence 56899999988755899999854333 112 2211 355677777777654 2567777777744 56789
Q ss_pred HHHHcCCCEEEEcccccC
Q 015424 372 YVQEAGVKAVLVGESIVK 389 (407)
Q Consensus 372 ~l~~~GadaVLVGeaLmk 389 (407)
++.++|+.-|=|++.|..
T Consensus 216 ~ai~~GI~KiNi~T~l~~ 233 (283)
T PRK08185 216 ESVQLGVGKINISSDMKY 233 (283)
T ss_pred HHHHCCCeEEEeChHHHH
Confidence 999999999999998854
No 192
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=97.42 E-value=0.0005 Score=63.58 Aligned_cols=94 Identities=22% Similarity=0.305 Sum_probs=66.3
Q ss_pred HHHHHHHHHHc--CC-cEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhccccccccc
Q 015424 277 IRYMTKICKLL--GL-TALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQ 353 (407)
Q Consensus 277 L~~Li~~a~~L--GL-~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~ 353 (407)
+.+.++.+++. .. .+.|||+|.+|++.|+++ |+++|-.-|-+. +...++++.++. . .
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~-g~d~I~lD~~~~----------------~~~~~~v~~l~~--~-~ 125 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEVENLEEAEEALEA-GADIIMLDNMSP----------------EDLKEAVEELRE--L-N 125 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHT-T-SEEEEES-CH----------------HHHHHHHHHHHH--H-T
T ss_pred HHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHh-CCCEEEecCcCH----------------HHHHHHHHHHhh--c-C
Confidence 44555555553 33 389999999999999997 999999955433 334444442211 1 2
Q ss_pred CCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015424 354 KNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 391 (407)
Q Consensus 354 ~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 391 (407)
..+.+.+.||| |++.+..+.+.|+|.+.||......+
T Consensus 126 ~~v~ie~SGGI-~~~ni~~ya~~gvD~isvg~~~~~a~ 162 (169)
T PF01729_consen 126 PRVKIEASGGI-TLENIAEYAKTGVDVISVGSLTHSAP 162 (169)
T ss_dssp TTSEEEEESSS-STTTHHHHHHTT-SEEEECHHHHSBE
T ss_pred CcEEEEEECCC-CHHHHHHHHhcCCCEEEcChhhcCCc
Confidence 45889999999 99999999999999999998765543
No 193
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=97.42 E-value=0.0019 Score=67.90 Aligned_cols=118 Identities=12% Similarity=0.148 Sum_probs=90.4
Q ss_pred CCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEec-------
Q 015424 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA------- 269 (407)
Q Consensus 197 ~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLia------- 269 (407)
.+-.+-+++..++|+..|.|-+-.+.-.+-.+.++.+|+...++||++++ +.++.+...+..+|||+|-+..
T Consensus 223 ~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~-v~t~~~a~~l~~aGad~i~vg~g~G~~~~ 301 (450)
T TIGR01302 223 EFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGN-VATAEQAKALIDAGADGLRVGIGPGSICT 301 (450)
T ss_pred hhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEe-CCCHHHHHHHHHhCCCEEEECCCCCcCCc
Confidence 35567788999999999999764444445667888888753589999966 6889999999999999996542
Q ss_pred -cCC-----CH-HHHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhcccCCcEEEee
Q 015424 270 -AVL-----PD-LDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGIN 316 (407)
Q Consensus 270 -aiL-----~~-~~L~~Li~~a~~LGL~aLV--EVht~eElerAl~l~Ga~iIGIN 316 (407)
..+ +. ..+.++.+.++..|+.++. =+++..|+.+|+.+ ||+.+.+-
T Consensus 302 t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~-GA~~V~~G 356 (450)
T TIGR01302 302 TRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAA-GADAVMLG 356 (450)
T ss_pred cceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHc-CCCEEEEC
Confidence 111 11 2234556667778999999 68999999999998 99999984
No 194
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=97.42 E-value=0.00064 Score=70.02 Aligned_cols=102 Identities=19% Similarity=0.281 Sum_probs=72.7
Q ss_pred CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHh
Q 015424 226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVL 305 (407)
Q Consensus 226 s~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl 305 (407)
+.+||+.+|+. .++||+.|.. .++.....+..+|+|+|.+--. ...+ +
T Consensus 212 tW~di~wlr~~-~~~PiivKgV-~~~~dA~~a~~~Gvd~I~Vsnh--GGrq----------------------------l 259 (367)
T PLN02493 212 SWKDVQWLQTI-TKLPILVKGV-LTGEDARIAIQAGAAGIIVSNH--GARQ----------------------------L 259 (367)
T ss_pred CHHHHHHHHhc-cCCCEEeecC-CCHHHHHHHHHcCCCEEEECCC--CCCC----------------------------C
Confidence 67999999986 8999999996 6788888899999999855321 1100 0
Q ss_pred cccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcc
Q 015424 306 GIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGE 385 (407)
Q Consensus 306 ~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGe 385 (407)
+ ++ . .|+ ....++.+. + ...+.+++.|||.+..|+.+...+||++|.||.
T Consensus 260 d--~~---------~---------~t~----~~L~ei~~a-----v-~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr 309 (367)
T PLN02493 260 D--YV---------P---------ATI----SALEEVVKA-----T-QGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 309 (367)
T ss_pred C--Cc---------h---------hHH----HHHHHHHHH-----h-CCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcH
Confidence 0 00 0 111 111222221 1 235789999999999999999999999999999
Q ss_pred cccC
Q 015424 386 SIVK 389 (407)
Q Consensus 386 aLmk 389 (407)
.++.
T Consensus 310 ~~l~ 313 (367)
T PLN02493 310 PVVF 313 (367)
T ss_pred HHHH
Confidence 8883
No 195
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=97.40 E-value=0.0011 Score=63.26 Aligned_cols=187 Identities=20% Similarity=0.130 Sum_probs=108.5
Q ss_pred CCcCCCCCCCCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccCC-HHHHHHHHHcCCCEEE
Q 015424 188 PSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVD-AWQIYYARTKGADAVL 266 (407)
Q Consensus 188 PSkG~i~~~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid-~~QI~eAr~~GADaVL 266 (407)
|-.-.+....||.++|.+|.+.||.-|=+-+ =.+-.|.-+|...+|+...-.|++ -|+.+. -..+.. +..=|+...
T Consensus 27 Pis~~~~~s~dP~eia~~lr~rgar~vYiAD-LdaI~g~g~n~d~i~~l~~~~~~i-vD~Gv~dL~s~~~-~l~~~~~~v 103 (229)
T COG1411 27 PISSRYCLSDDPLEIAEALRERGARFVYIAD-LDAILGGGDNADTIRELSSLEKVI-VDVGVRDLESHAH-RLIPAETAV 103 (229)
T ss_pred CcceeecCCCChHHHHHHHhhccCceEEeee-hHHHhcCCCcHHHHHHHHhhhhhe-eecccccccCHHH-hcCCCccee
Confidence 3333566677999999999999998887754 445666557777777531223433 333332 222322 233556666
Q ss_pred EeccCCCHHHHHHHHHHHHHcCCcE--------EEEeCCHHHHHHHhc-ccCCcEEEeeccccccccccccccccc-cCc
Q 015424 267 LIAAVLPDLDIRYMTKICKLLGLTA--------LVEVHDEREMDRVLG-IEGIELIGINNRNLAISIFSYRTETFE-VDN 336 (407)
Q Consensus 267 LiaaiL~~~~L~~Li~~a~~LGL~a--------LVEVht~eElerAl~-l~Ga~iIGINnRdL~~~~~~~t~~Tf~-vDl 336 (407)
+.+.-+.+.++.+= ..+ ..++++ | ..+..|.-+-+. .....+|=+.---. .|.+ +|.
T Consensus 104 v~TEt~e~~e~~e~-~r~-vvslD~k~~~Ll~~~--~ed~le~Vk~l~~~~~~~lIvLDi~aV---------Gt~~G~~~ 170 (229)
T COG1411 104 VGTETLEDTEEDEE-GRI-VVSLDVKGGELLGPW--LEDFLETVKDLNYRRDPGLIVLDIGAV---------GTKSGPDY 170 (229)
T ss_pred eccchhhhhhhhhc-cce-EEEEecCCCeecCCC--chhHHHHHHHHhccCCCCeEEEEcccc---------ccccCCCH
Confidence 66655544322111 000 011111 2 122222222221 11223433321111 2333 777
Q ss_pred hhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHH
Q 015424 337 SNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGIT 398 (407)
Q Consensus 337 ~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~ 398 (407)
+....++.. ...+|+-.|||...||++.+..+|++|||||++|.++-.|-+-.+
T Consensus 171 E~l~~~~~~--------s~~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~G~vple~~~ 224 (229)
T COG1411 171 ELLTKVLEL--------SEHPVLLGGGVGGMEDLELLLGMGVSGVLVATALHEGVVPLEVEQ 224 (229)
T ss_pred HHHHHHHHh--------ccCceeecCCcCcHHHHHHHhcCCCceeeehhhhhcCcCcHHHHh
Confidence 777776654 244788899999999999999999999999999999999887654
No 196
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=97.40 E-value=0.001 Score=64.86 Aligned_cols=160 Identities=18% Similarity=0.098 Sum_probs=97.3
Q ss_pred CHHHHHHHHhcC--CCCcEEeccc-----c-----CCHHHHHHHHHcCCCEEEEeccC------CCHHHHHHHHHHHHHc
Q 015424 226 SFENLEAVRSAG--VKCPLLCKEF-----I-----VDAWQIYYARTKGADAVLLIAAV------LPDLDIRYMTKICKLL 287 (407)
Q Consensus 226 s~edL~~Vr~a~--v~lPVL~KDF-----I-----id~~QI~eAr~~GADaVLLiaai------L~~~~L~~Li~~a~~L 287 (407)
++-+|..+++.. ..+.|-..|. . +.+.+ .+++|++.|+++++= -+++.+..=++.|.+.
T Consensus 40 p~~~L~~~~~~~~~~~i~vgAQnv~~~~~Ga~TGevS~~m---L~d~G~~~viiGHSERR~~f~Et~~~i~~Kv~~a~~~ 116 (242)
T cd00311 40 PFTYLAAVAEALEGSKIKVGAQNVSPEDSGAFTGEISAEM---LKDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEA 116 (242)
T ss_pred CHHHHHHHHHHccCCCeEEEecccccccCCCCcCcCCHHH---HHHcCCCEEEeCcccccCcCCCCcHHHHHHHHHHHHC
Confidence 456666666531 1355555441 1 33333 567799999999982 2667888888889999
Q ss_pred CCcEEEEeCCHHHHH----------HHhcc--c-----CCcEEEeeccccccccccccccccccCchhHHHHhhcccc--
Q 015424 288 GLTALVEVHDEREMD----------RVLGI--E-----GIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERG-- 348 (407)
Q Consensus 288 GL~aLVEVht~eEle----------rAl~l--~-----Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~-- 348 (407)
||.++++|-...|-. +-+.. . ...+|.....=.||||..-++.. ..+....+.+.+..
T Consensus 117 gl~pIvCiGE~~~~r~~~~~~~~~~~Ql~~~l~~~~~~~~~iIAYEPvWAIGtG~~as~~~---~~ev~~~ir~~l~~~~ 193 (242)
T cd00311 117 GLTPILCVGETLEEREAGKTEEVVAAQLAAVLAGVEDLAPVVIAYEPVWAIGTGKTASPEQ---AQEVHAFIRKLLAELY 193 (242)
T ss_pred CCEEEEEeCCCHHHHHcCCHHHHHHHHHHHHHhcchhhcCeEEEECCHHHhCCCCCCCHHH---HHHHHHHHHHHHHHhc
Confidence 999999998654322 22211 0 12467776666655544322211 11111112211110
Q ss_pred cccccCCceEEEeeCCCCHHHHHHHHHcC-CCEEEEcccccCCCCh
Q 015424 349 EIIRQKNIIVVGESGLFTPDDIAYVQEAG-VKAVLVGESIVKQDDP 393 (407)
Q Consensus 349 ~~i~~~~v~vVAESGI~t~eD~~~l~~~G-adaVLVGeaLmk~~dp 393 (407)
+. ...++.++..|+|+ ++++..+.+.+ +||+|||.+-++.++.
T Consensus 194 ~~-~~~~~~IlYGGSV~-~~N~~~l~~~~~vDG~LVG~Asl~~~~f 237 (242)
T cd00311 194 GE-VAEKVRILYGGSVN-PENAAELLAQPDIDGVLVGGASLKAESF 237 (242)
T ss_pred cc-ccCceeEEECCCCC-HHHHHHHhcCCCCCEEEeehHhhCHHHH
Confidence 00 11357889999995 59999999998 9999999999975543
No 197
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=97.39 E-value=0.012 Score=58.47 Aligned_cols=132 Identities=17% Similarity=0.082 Sum_probs=78.1
Q ss_pred CCCEEEEeccC--------C--CHHHHHHHHHHHHH-cCCcEEEEeC---CHHHHHHHhc---cc--CCcEEEeecccc-
Q 015424 261 GADAVLLIAAV--------L--PDLDIRYMTKICKL-LGLTALVEVH---DEREMDRVLG---IE--GIELIGINNRNL- 320 (407)
Q Consensus 261 GADaVLLiaai--------L--~~~~L~~Li~~a~~-LGL~aLVEVh---t~eElerAl~---l~--Ga~iIGINnRdL- 320 (407)
|||+|=|..+. + +++.+.++++..++ ....++|-+. +.+++.++.+ .. |++.|-+.|+-.
T Consensus 119 ~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~ 198 (294)
T cd04741 119 FPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGN 198 (294)
T ss_pred cccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCc
Confidence 79999998873 2 35567777777765 4677777766 4334333322 23 556444333320
Q ss_pred --cccccccc-----cccc---c------cCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEc
Q 015424 321 --AISIFSYR-----TETF---E------VDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVG 384 (407)
Q Consensus 321 --~~~~~~~t-----~~Tf---~------vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVG 384 (407)
.+++...+ ...+ + ..+....++.+. + +.++++|+.|||.|.+|+.++..+||++|-||
T Consensus 199 ~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~-----~-~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ 272 (294)
T cd04741 199 GLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRL-----L-PSEIQIIGVGGVLDGRGAFRMRLAGASAVQVG 272 (294)
T ss_pred cccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHh-----c-CCCCCEEEeCCCCCHHHHHHHHHcCCCceeEc
Confidence 01110000 0000 0 111222333222 1 23589999999999999999999999999999
Q ss_pred ccccC-CCChHHHHH
Q 015424 385 ESIVK-QDDPGKGIT 398 (407)
Q Consensus 385 eaLmk-~~dp~~~i~ 398 (407)
++++. .++....+.
T Consensus 273 ta~~~~gp~~~~~i~ 287 (294)
T cd04741 273 TALGKEGPKVFARIE 287 (294)
T ss_pred hhhhhcCchHHHHHH
Confidence 99995 777665554
No 198
>PTZ00333 triosephosphate isomerase; Provisional
Probab=97.39 E-value=0.0014 Score=64.51 Aligned_cols=159 Identities=9% Similarity=0.046 Sum_probs=101.3
Q ss_pred CHHHHHHHHhc--CCCCcEEeccc----------cCCHHHHHHHHHcCCCEEEEeccC----C--CHHHHHHHHHHHHHc
Q 015424 226 SFENLEAVRSA--GVKCPLLCKEF----------IVDAWQIYYARTKGADAVLLIAAV----L--PDLDIRYMTKICKLL 287 (407)
Q Consensus 226 s~edL~~Vr~a--~v~lPVL~KDF----------Iid~~QI~eAr~~GADaVLLiaai----L--~~~~L~~Li~~a~~L 287 (407)
++-+|..+.+. ..+++|-..|. =+.+.+ .+++|++.|+++++= + +++.+..=++.|.+.
T Consensus 45 ~~~~L~~~~~~~~~~~i~vgAQn~~~~~~Ga~TGevS~~m---L~d~G~~~viiGHSERR~~f~Etd~~I~~Kv~~al~~ 121 (255)
T PTZ00333 45 PSLHIPLVQEKLKNKNFKISSQNVSLTGSGAFTGEISAEM---LKDLGINWTILGHSERRQYFGETNEIVAQKVKNALEN 121 (255)
T ss_pred CHHHHHHHHHHhcCCCeeEEccccccccCCCccCcCCHHH---HHHcCCCEEEECcccccCcCCCCcHHHHHHHHHHHHC
Confidence 46667666642 13566666652 133333 466799999999982 2 556777778889999
Q ss_pred CCcEEEEeCCHH--------------HHHHHhcccCCc------EEEeeccccccccccccccccccCchhHHHHhhccc
Q 015424 288 GLTALVEVHDER--------------EMDRVLGIEGIE------LIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGER 347 (407)
Q Consensus 288 GL~aLVEVht~e--------------ElerAl~l~Ga~------iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~ 347 (407)
||.++++|-... +++.+++. -.+ +|.....-.||+|.. .+++...+....++
T Consensus 122 gl~pIlCvGE~~~~~~~~~~~~~v~~Ql~~~l~~-v~~~~~~~iiIAYEPvWAIGtg~~-------a~~e~i~~~~~~IR 193 (255)
T PTZ00333 122 GLKVILCIGETLEEREAGQTSDVLSKQLEAIVKK-VSDEAWDNIVIAYEPVWAIGTGKV-------ATPEQAQEVHAFIR 193 (255)
T ss_pred CCEEEEEcCCCHHHHhCCCHHHHHHHHHHHHHhc-CCHHHcceEEEEECCHHHhCCCCC-------CCHHHHHHHHHHHH
Confidence 999999999754 56555542 112 677766666554332 23333332222222
Q ss_pred c-------cccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHH
Q 015424 348 G-------EIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGI 397 (407)
Q Consensus 348 ~-------~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i 397 (407)
. ..+ ..++.++-.|+|+.-.+...+...|+||+|||.+-++ ++..+-+
T Consensus 194 ~~l~~~~~~~~-~~~~~ILYGGSV~~~N~~~l~~~~~vDG~LvG~asl~-~~f~~Ii 248 (255)
T PTZ00333 194 KWLAEKVGADV-AEATRIIYGGSVNEKNCKELIKQPDIDGFLVGGASLK-PDFVDII 248 (255)
T ss_pred HHHHHhhcccc-cccceEEEcCCCCHHHHHHHhcCCCCCEEEEehHhhh-hhHHHHH
Confidence 1 001 2357899999997766667777889999999999998 3544444
No 199
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=97.38 E-value=0.006 Score=61.42 Aligned_cols=148 Identities=13% Similarity=0.061 Sum_probs=97.7
Q ss_pred CCcEEeccccCCHHHHHHH----HHcCCCEEEEeccCC---------------CHHHHHHHHHHHHH-c--CCcEEEEeC
Q 015424 239 KCPLLCKEFIVDAWQIYYA----RTKGADAVLLIAAVL---------------PDLDIRYMTKICKL-L--GLTALVEVH 296 (407)
Q Consensus 239 ~lPVL~KDFIid~~QI~eA----r~~GADaVLLiaaiL---------------~~~~L~~Li~~a~~-L--GL~aLVEVh 296 (407)
..|+...=|.-+|.++.+| ..+|+|.|=|....- .+..+.++++..++ . ++.+.|-+.
T Consensus 62 e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR 141 (312)
T PRK10550 62 GTLVRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVR 141 (312)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEE
Confidence 4677777777777766543 357888888875542 23445555555554 3 255544432
Q ss_pred -------CHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHH
Q 015424 297 -------DEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDD 369 (407)
Q Consensus 297 -------t~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD 369 (407)
...++-+.++-.|++.|-|-.|.- .-+|+. ...|++...++.+. -+++||+-|||.|++|
T Consensus 142 ~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~---~~~y~g--~~~~~~~i~~ik~~--------~~iPVi~nGdI~t~~d 208 (312)
T PRK10550 142 LGWDSGERKFEIADAVQQAGATELVVHGRTK---EDGYRA--EHINWQAIGEIRQR--------LTIPVIANGEIWDWQS 208 (312)
T ss_pred CCCCCchHHHHHHHHHHhcCCCEEEECCCCC---ccCCCC--CcccHHHHHHHHhh--------cCCcEEEeCCcCCHHH
Confidence 122333434334999999987754 112221 11367777777654 2589999999999999
Q ss_pred HHHHH-HcCCCEEEEcccccCCCChHHHHHh
Q 015424 370 IAYVQ-EAGVKAVLVGESIVKQDDPGKGITG 399 (407)
Q Consensus 370 ~~~l~-~~GadaVLVGeaLmk~~dp~~~i~~ 399 (407)
+..+. ..|||+|.||.+++..|+....++.
T Consensus 209 a~~~l~~~g~DgVmiGRg~l~nP~lf~~~~~ 239 (312)
T PRK10550 209 AQQCMAITGCDAVMIGRGALNIPNLSRVVKY 239 (312)
T ss_pred HHHHHhccCCCEEEEcHHhHhCcHHHHHhhc
Confidence 99987 5799999999999999988876654
No 200
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=97.38 E-value=0.0025 Score=61.98 Aligned_cols=143 Identities=14% Similarity=0.104 Sum_probs=90.3
Q ss_pred CCHHHHHHHHHcCCCEEEEeccC-CCHHHHHHHHHHHH-HcCCcEEEEeCCHHHHHHHhcccCCcEEEeecccc--cc--
Q 015424 249 VDAWQIYYARTKGADAVLLIAAV-LPDLDIRYMTKICK-LLGLTALVEVHDEREMDRVLGIEGIELIGINNRNL--AI-- 322 (407)
Q Consensus 249 id~~QI~eAr~~GADaVLLiaai-L~~~~L~~Li~~a~-~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL--~~-- 322 (407)
........+..+|.|+|+++-+. .+.+++..+++.++ ..++.+++|..+.+-+-+..+. =+-.-=.|.+|. +.
T Consensus 29 ~~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~~is~~aDa-vff~svLNS~n~~~i~ga 107 (240)
T COG1646 29 EADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVILFPGSPSGISPYADA-VFFPSVLNSDNPYWIVGA 107 (240)
T ss_pred ccHHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHHHhhcCCCEEEecCChhccCccCCe-EEEEEEecCCCcccccch
Confidence 44455666789999999998886 67778999999999 7999999999999887664442 010111233322 00
Q ss_pred -----------------ccc----------cccccc----cccCchhHHHHhhcccc---------cccc----------
Q 015424 323 -----------------SIF----------SYRTET----FEVDNSNTKKLLEGERG---------EIIR---------- 352 (407)
Q Consensus 323 -----------------~~~----------~~t~~T----f~vDl~~t~~L~~~~~~---------~~i~---------- 352 (407)
.+| -++... ...|+.....|....-+ +..+
T Consensus 108 q~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~~~iaa~y~la~~~~g~~~~YlEagsga~~Pv~~e~v~~ 187 (240)
T COG1646 108 QVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDKEDIAAYYALAEKYLGMPVVYLEAGSGAGDPVPVEMVSR 187 (240)
T ss_pred hhhhhHHHHhhhheecceEEEEECCCCceeeecccccCCCCcHHHHHHHHHHHHHhCCeEEEEEecCCCCCCcCHHHHHH
Confidence 000 000000 00222223333321100 0000
Q ss_pred -cCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCC
Q 015424 353 -QKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD 392 (407)
Q Consensus 353 -~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~d 392 (407)
.+...++..|||+++|+++++.++|||.+++|+.+.+.++
T Consensus 188 v~~~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~~ 228 (240)
T COG1646 188 VLSDTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDPD 228 (240)
T ss_pred hhccceEEEcCCcCCHHHHHHHHHcCCCEEEECceeecCHH
Confidence 0134889999999999999999999999999999999873
No 201
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=97.38 E-value=0.0037 Score=59.53 Aligned_cols=159 Identities=21% Similarity=0.328 Sum_probs=94.9
Q ss_pred HHHHHHHcCCcEEEEEecCCcCCC---CHHHHHHHHhcCCCCcEEe------ccccCCHH-------HHHHHHHcCCCEE
Q 015424 202 IARSYEKGGAACLSILTDEKYFKG---SFENLEAVRSAGVKCPLLC------KEFIVDAW-------QIYYARTKGADAV 265 (407)
Q Consensus 202 iA~ay~~~GA~aISVLTd~~~F~G---s~edL~~Vr~a~v~lPVL~------KDFIid~~-------QI~eAr~~GADaV 265 (407)
-|...+++||+.|-++..-. .+| |+..++.+++. +++||-+ .||+.++. +|..++.+|||++
T Consensus 12 ~a~~A~~~GAdRiELc~~l~-~GGlTPS~g~i~~~~~~-~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~GadG~ 89 (201)
T PF03932_consen 12 DALAAEAGGADRIELCSNLE-VGGLTPSLGLIRQAREA-VDIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELGADGF 89 (201)
T ss_dssp HHHHHHHTT-SEEEEEBTGG-GT-B---HHHHHHHHHH-TTSEEEEE--SSSS-S---HHHHHHHHHHHHHHHHTT-SEE
T ss_pred HHHHHHHcCCCEEEECCCcc-CCCcCcCHHHHHHHHhh-cCCceEEEECCCCCCccCCHHHHHHHHHHHHHHHHcCCCee
Confidence 46677899999999987432 355 78899999886 8899762 58988887 4567889999999
Q ss_pred EEecc----CCCHHHHHHHHHHHHHcCCcEEE-----EeCCHHHH-HHHhcccCCcEEEeeccccccccccccccccccC
Q 015424 266 LLIAA----VLPDLDIRYMTKICKLLGLTALV-----EVHDEREM-DRVLGIEGIELIGINNRNLAISIFSYRTETFEVD 335 (407)
Q Consensus 266 LLiaa----iL~~~~L~~Li~~a~~LGL~aLV-----EVht~eEl-erAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vD 335 (407)
.+++- -++.+.+++|++.++ ||.+-. ++.+..+. +...++ |++-|=... +- .+..-.
T Consensus 90 VfG~L~~dg~iD~~~~~~Li~~a~--~~~~tFHRAfD~~~d~~~al~~L~~l-G~~rVLTSG--------g~--~~a~~g 156 (201)
T PF03932_consen 90 VFGALTEDGEIDEEALEELIEAAG--GMPVTFHRAFDEVPDPEEALEQLIEL-GFDRVLTSG--------GA--PTALEG 156 (201)
T ss_dssp EE--BETTSSB-HHHHHHHHHHHT--TSEEEE-GGGGGSSTHHHHHHHHHHH-T-SEEEEST--------TS--SSTTTC
T ss_pred EEEeECCCCCcCHHHHHHHHHhcC--CCeEEEeCcHHHhCCHHHHHHHHHhc-CCCEEECCC--------CC--CCHHHH
Confidence 99863 345567888888776 555422 33455444 444465 665332211 11 233345
Q ss_pred chhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHH-cCCCEEE
Q 015424 336 NSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQE-AGVKAVL 382 (407)
Q Consensus 336 l~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~-~GadaVL 382 (407)
++...+|.+.. ...+.+++.||| +++.+..+.+ .|+..|=
T Consensus 157 ~~~L~~lv~~a------~~~i~Im~GgGv-~~~nv~~l~~~tg~~~~H 197 (201)
T PF03932_consen 157 IENLKELVEQA------KGRIEIMPGGGV-RAENVPELVEETGVREIH 197 (201)
T ss_dssp HHHHHHHHHHH------TTSSEEEEESS---TTTHHHHHHHHT-SEEE
T ss_pred HHHHHHHHHHc------CCCcEEEecCCC-CHHHHHHHHHhhCCeEEe
Confidence 66666676541 235789999999 6677777766 8988763
No 202
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=97.36 E-value=0.0036 Score=64.58 Aligned_cols=164 Identities=18% Similarity=0.197 Sum_probs=103.3
Q ss_pred HHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCE----EE-EeccCCCH
Q 015424 200 VEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADA----VL-LIAAVLPD 274 (407)
Q Consensus 200 ~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADa----VL-LiaaiL~~ 274 (407)
.++.+..+++|+.+|-+-.|-..++-...|+ |. +..+|. +. ..++ .....|... +. .....++.
T Consensus 149 ~~li~RA~~aG~~alvlTvD~p~~g~R~~d~---r~-~~~~p~--~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~w 217 (367)
T TIGR02708 149 RDIMDRVKADGAKAIVLTADATVGGNREVDV---RN-GFVFPV--GM---PIVQ--EYLPTGAGKSMDNVYKSAKQKLSP 217 (367)
T ss_pred HHHHHHHHHcCCCEEEEecCCCCCCcchhhh---hc-CCCCCC--cc---chhh--hhcccCCccchhhhccccCCCCCH
Confidence 5677788899999999999988887776665 44 255662 11 1111 000011110 00 01234555
Q ss_pred HHHHHHHHHHHHcCCcE-EEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhccccccccc
Q 015424 275 LDIRYMTKICKLLGLTA-LVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQ 353 (407)
Q Consensus 275 ~~L~~Li~~a~~LGL~a-LVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~ 353 (407)
++++.+.+ ..++.+ +-+|-+.++++++.++ |++.|-|.|..- -.-..-..+++...++.+. + .
T Consensus 218 ~~i~~l~~---~~~~PvivKGv~~~eda~~a~~~-Gvd~I~VS~HGG------rq~~~~~a~~~~L~ei~~a-----v-~ 281 (367)
T TIGR02708 218 RDIEEIAG---YSGLPVYVKGPQCPEDADRALKA-GASGIWVTNHGG------RQLDGGPAAFDSLQEVAEA-----V-D 281 (367)
T ss_pred HHHHHHHH---hcCCCEEEeCCCCHHHHHHHHHc-CcCEEEECCcCc------cCCCCCCcHHHHHHHHHHH-----h-C
Confidence 56655543 445554 4477889999999997 999887766432 0002222334444454433 1 2
Q ss_pred CCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015424 354 KNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 390 (407)
Q Consensus 354 ~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~ 390 (407)
..+.+++-|||.+..|+.++..+||++|.||..++.+
T Consensus 282 ~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~~ 318 (367)
T TIGR02708 282 KRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIYG 318 (367)
T ss_pred CCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHHH
Confidence 3588999999999999999999999999999987654
No 203
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=97.36 E-value=0.00086 Score=68.06 Aligned_cols=158 Identities=18% Similarity=0.180 Sum_probs=92.3
Q ss_pred CCHHHHHHHHHHcC--CcEEEEEecCCcCC-----CCHHH----HHHHHhcCCC-------CcEEec---cccC-CHHHH
Q 015424 197 FDPVEIARSYEKGG--AACLSILTDEKYFK-----GSFEN----LEAVRSAGVK-------CPLLCK---EFIV-DAWQI 254 (407)
Q Consensus 197 ~dp~~iA~ay~~~G--A~aISVLTd~~~F~-----Gs~ed----L~~Vr~a~v~-------lPVL~K---DFIi-d~~QI 254 (407)
..+.++++..++.+ |++|-++.--.... ...+. ++.||+. ++ +||+.| ++-. +...+
T Consensus 151 ~~~~dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~-~~~~~~~~~~Pv~vKLsP~~~~~~i~~i 229 (335)
T TIGR01036 151 DAKEDYAACLRKLGPLADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQE-QDGLRRVHRVPVLVKIAPDLTESDLEDI 229 (335)
T ss_pred cCHHHHHHHHHHHhhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHH-HHhhhhccCCceEEEeCCCCCHHHHHHH
Confidence 35667777776666 89988863222111 22333 4445544 44 999987 3321 23334
Q ss_pred HH-HHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccc
Q 015424 255 YY-ARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFE 333 (407)
Q Consensus 255 ~e-Ar~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~ 333 (407)
.+ +.++|||+|.++-++.+. +. + .+ ... +...=|+...-+ +.
T Consensus 230 a~~~~~~GadGi~l~NT~~~~---------------~~-~--~~-------~~~-~~~~GGlSG~~i-----------~p 272 (335)
T TIGR01036 230 ADSLVELGIDGVIATNTTVSR---------------SL-V--QG-------PKN-SDETGGLSGKPL-----------QD 272 (335)
T ss_pred HHHHHHhCCcEEEEECCCCcc---------------cc-c--cC-------ccc-cCCCCcccCHHH-----------HH
Confidence 44 678899999999877531 10 0 00 000 000002211111 11
Q ss_pred cCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccC-CCChHHHHH
Q 015424 334 VDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK-QDDPGKGIT 398 (407)
Q Consensus 334 vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk-~~dp~~~i~ 398 (407)
.-+....++.+. + +.++.+|+.|||.|.+|+..+..+||++|=||++++. +++....+.
T Consensus 273 ~al~~v~~~~~~-----~-~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~~Gp~~~~~i~ 332 (335)
T TIGR01036 273 KSTEIIRRLYAE-----L-QGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIYWGPPLVKEIV 332 (335)
T ss_pred HHHHHHHHHHHH-----h-CCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHHhCchHHHHHH
Confidence 223333333332 1 2358999999999999999999999999999999976 577766654
No 204
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=97.29 E-value=0.0026 Score=60.90 Aligned_cols=150 Identities=22% Similarity=0.297 Sum_probs=97.0
Q ss_pred CHHHHHHHHhcCCCCcEEeccccCC------HHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcE--EEEeCC
Q 015424 226 SFENLEAVRSAGVKCPLLCKEFIVD------AWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTA--LVEVHD 297 (407)
Q Consensus 226 s~edL~~Vr~a~v~lPVL~KDFIid------~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~a--LVEVht 297 (407)
-++.++.+|..++.+||+--.+-.+ +.-|..|+.+||.+.++ -.|++++-..|-+.|+..|++. |+--++
T Consensus 82 i~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfii--vDlPpEEa~~~Rne~~k~gislvpLvaPsT 159 (268)
T KOG4175|consen 82 IIEMVKEARPQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFII--VDLPPEEAETLRNEARKHGISLVPLVAPST 159 (268)
T ss_pred HHHHHHHhcccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEe--ccCChHHHHHHHHHHHhcCceEEEeeCCCC
Confidence 3577788887779999986654221 12355689999999655 4678888888999999988775 555555
Q ss_pred HHHHHHHh-cccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHc
Q 015424 298 EREMDRVL-GIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEA 376 (407)
Q Consensus 298 ~eElerAl-~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~ 376 (407)
..|=..++ ++ .-.+|-+-.|-- .|...-+++-. ..+|+..++. . ..+.++-..=||+++|+.+.+.+.
T Consensus 160 tdeRmell~~~-adsFiYvVSrmG------~TG~~~svn~~-l~~L~qrvrk--~-t~dtPlAVGFGvst~EHf~qVgsv 228 (268)
T KOG4175|consen 160 TDERMELLVEA-ADSFIYVVSRMG------VTGTRESVNEK-LQSLLQRVRK--A-TGDTPLAVGFGVSTPEHFKQVGSV 228 (268)
T ss_pred hHHHHHHHHHh-hcceEEEEEecc------ccccHHHHHHH-HHHHHHHHHH--h-cCCCceeEeeccCCHHHHHhhhhh
Confidence 55543333 32 123666655532 22222223322 2334333221 1 135677778899999999999999
Q ss_pred CCCEEEEcccccC
Q 015424 377 GVKAVLVGESIVK 389 (407)
Q Consensus 377 GadaVLVGeaLmk 389 (407)
+|||+||+.+++
T Consensus 229 -aDGVvvGSkiv~ 240 (268)
T KOG4175|consen 229 -ADGVVVGSKIVK 240 (268)
T ss_pred -ccceEecHHHHH
Confidence 999999998763
No 205
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.29 E-value=0.0034 Score=67.02 Aligned_cols=119 Identities=13% Similarity=0.201 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEecc-------
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA------- 270 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa------- 270 (407)
+-.+.+.+..++|+..|.|-+-.+.-....+.++.+|+...++||.+++ +.+..+...+..+|||+|.+...
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~-V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t 319 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGN-VVTADQAKNLIDAGADGLRIGMGSGSICIT 319 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECC-cCCHHHHHHHHHcCCCEEEECCcCCccccc
Confidence 4478899999999999999764333333467888888753478999975 68899999999999999976311
Q ss_pred -C-----CCH-HHHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhcccCCcEEEeecc
Q 015424 271 -V-----LPD-LDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGINNR 318 (407)
Q Consensus 271 -i-----L~~-~~L~~Li~~a~~LGL~aLV--EVht~eElerAl~l~Ga~iIGINnR 318 (407)
. .+. ..+.++.+.+++.|+.++. =+++..|+-+|+.+ ||+.+.+-..
T Consensus 320 ~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~-GA~~Vm~G~~ 375 (495)
T PTZ00314 320 QEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKALAL-GADCVMLGSL 375 (495)
T ss_pred chhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHc-CCCEEEECch
Confidence 0 111 2344566777888999999 78999999999998 9999988544
No 206
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.25 E-value=0.0026 Score=63.34 Aligned_cols=89 Identities=17% Similarity=0.253 Sum_probs=64.7
Q ss_pred HHHHHHc--CCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceE
Q 015424 281 TKICKLL--GLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIV 358 (407)
Q Consensus 281 i~~a~~L--GL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~v 358 (407)
++.++.. ....-|||.|.+|+..|+++ |+|+|-..|-+. +...+.++.+..... ++.+.+
T Consensus 173 v~~~r~~~~~~kIeVEv~~leea~~a~~a-gaDiI~LDn~~~----------------e~l~~~v~~l~~~~~-~~~~~l 234 (278)
T PRK08385 173 IRRAKEFSVYKVVEVEVESLEDALKAAKA-GADIIMLDNMTP----------------EEIREVIEALKREGL-RERVKI 234 (278)
T ss_pred HHHHHHhCCCCcEEEEeCCHHHHHHHHHc-CcCEEEECCCCH----------------HHHHHHHHHHHhcCc-CCCEEE
Confidence 3444443 36789999999999999997 999999855433 334444443211001 135789
Q ss_pred EEeeCCCCHHHHHHHHHcCCCEEEEccccc
Q 015424 359 VGESGLFTPDDIAYVQEAGVKAVLVGESIV 388 (407)
Q Consensus 359 VAESGI~t~eD~~~l~~~GadaVLVGeaLm 388 (407)
.+.||| +++.+..+.+.|+|.+.+|.-..
T Consensus 235 eaSGGI-~~~ni~~yA~tGvD~Is~galt~ 263 (278)
T PRK08385 235 EVSGGI-TPENIEEYAKLDVDVISLGALTH 263 (278)
T ss_pred EEECCC-CHHHHHHHHHcCCCEEEeChhhc
Confidence 999999 99999999999999999997544
No 207
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=97.24 E-value=0.006 Score=60.93 Aligned_cols=93 Identities=8% Similarity=0.098 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHc--CCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhccccccccc
Q 015424 276 DIRYMTKICKLL--GLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQ 353 (407)
Q Consensus 276 ~L~~Li~~a~~L--GL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~ 353 (407)
.+...++.+++. ...+-|||.|.+|++.++++ |+++|-..|-+. +...+..+.++. . .
T Consensus 175 ~i~~av~~~r~~~~~~kIeVEv~tleqa~ea~~a-gaDiI~LDn~~~----------------e~l~~av~~~~~--~-~ 234 (284)
T PRK06096 175 DWSGAINQLRRHAPEKKIVVEADTPKEAIAALRA-QPDVLQLDKFSP----------------QQATEIAQIAPS--L-A 234 (284)
T ss_pred cHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc-CCCEEEECCCCH----------------HHHHHHHHHhhc--c-C
Confidence 345566666664 56799999999999999997 999999965544 223333332110 0 1
Q ss_pred CCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015424 354 KNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 390 (407)
Q Consensus 354 ~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~ 390 (407)
..+.+-+.||| |++.+..+...|+|.+.+|. |+.+
T Consensus 235 ~~~~leaSGGI-~~~ni~~yA~tGvD~Is~ga-l~~a 269 (284)
T PRK06096 235 PHCTLSLAGGI-NLNTLKNYADCGIRLFITSA-PYYA 269 (284)
T ss_pred CCeEEEEECCC-CHHHHHHHHhcCCCEEEECc-cccC
Confidence 35788899999 99999999999999887765 5554
No 208
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.23 E-value=0.0047 Score=65.64 Aligned_cols=118 Identities=17% Similarity=0.166 Sum_probs=91.4
Q ss_pred CCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEE--------Ee
Q 015424 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVL--------LI 268 (407)
Q Consensus 197 ~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVL--------Li 268 (407)
.+..+.++.+.+.|++.|.+-+-.++-..-.+-++.||+...++||++ ||+.+..+...+..+|||+|- ..
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~t 302 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVA-GNVVSAEGVRDLLEAGANIIKVGVGPGAMCT 302 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEE-eccCCHHHHHHHHHhCCCEEEECCcCCcccc
Confidence 467789999999999998886554444444456777776535899999 899999999999999999998 44
Q ss_pred ccCCCH---HHHH---HHHHHHHHcCCcEEEE--eCCHHHHHHHhcccCCcEEEee
Q 015424 269 AAVLPD---LDIR---YMTKICKLLGLTALVE--VHDEREMDRVLGIEGIELIGIN 316 (407)
Q Consensus 269 aaiL~~---~~L~---~Li~~a~~LGL~aLVE--Vht~eElerAl~l~Ga~iIGIN 316 (407)
.+.+.. .++. ++.+.++++|+.++.| +++..++-+|+.+ ||+.+++-
T Consensus 303 tr~~~~~g~~~~~a~~~~~~~~~~~~~~viadGgi~~~~di~kala~-GA~~vm~g 357 (475)
T TIGR01303 303 TRMMTGVGRPQFSAVLECAAEARKLGGHVWADGGVRHPRDVALALAA-GASNVMVG 357 (475)
T ss_pred CccccCCCCchHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHc-CCCEEeec
Confidence 554422 3444 4445557789999998 7799999999998 99999984
No 209
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=97.23 E-value=0.0011 Score=62.20 Aligned_cols=120 Identities=23% Similarity=0.231 Sum_probs=82.7
Q ss_pred eEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEEe----cCCcCCC-----CHHHHHHHHhcCCCCcEEecccc
Q 015424 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILT----DEKYFKG-----SFENLEAVRSAGVKCPLLCKEFI 248 (407)
Q Consensus 178 ~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVLT----d~~~F~G-----s~edL~~Vr~a~v~lPVL~KDFI 248 (407)
+||.++- -.++|+..+++||.++.+|- |-..-+| ++.-++.|..+ |++||+.|--|
T Consensus 16 GVIMDV~--------------n~eQAkIAE~AGA~AVMaLervPadiR~~GGVaRMsDP~~I~eI~~a-VsIPVMAK~RI 80 (208)
T PF01680_consen 16 GVIMDVT--------------NAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMSDPKMIKEIMDA-VSIPVMAKVRI 80 (208)
T ss_dssp EEEEEES--------------SHHHHHHHHHHT-SEEEE-SS-HHHHHHTTS---S--HHHHHHHHHH--SSEEEEEEET
T ss_pred CeEEEec--------------CHHHHHHHHHhCCeEEEEeccCCHhHHhcCCccccCCHHHHHHHHHh-eEeceeecccc
Confidence 6888873 24799999999999999884 2233334 67888888887 99999999877
Q ss_pred CCH--HHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeec
Q 015424 249 VDA--WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINN 317 (407)
Q Consensus 249 id~--~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINn 317 (407)
=+. .||.|| .|.|.|-- ..+|++.|-.+.++ -+.+....++-+.|+-|+.|-+. +||.+|-...
T Consensus 81 GHfvEAqiLea--lgVD~IDE-SEVLTpAD~~~HI~-K~~F~vPFVcGarnLGEALRRI~-EGAaMIRtKG 146 (208)
T PF01680_consen 81 GHFVEAQILEA--LGVDYIDE-SEVLTPADEENHID-KHNFKVPFVCGARNLGEALRRIA-EGAAMIRTKG 146 (208)
T ss_dssp T-HHHHHHHHH--TT-SEEEE-ETTS--S-SS-----GGG-SS-EEEEESSHHHHHHHHH-TT-SEEEEET
T ss_pred ceeehhhhHHH--hCCceecc-cccccccccccccc-chhCCCCeEecCCCHHHHHhhHH-hhhhhhcccC
Confidence 555 488777 89999877 67888876555554 35688999999999999999998 5999998753
No 210
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=97.22 E-value=0.024 Score=55.40 Aligned_cols=181 Identities=22% Similarity=0.251 Sum_probs=113.0
Q ss_pred CCHHHHHHHHHHcCCcEEEEEecCC--cCCCCHHHHHHHHhcCCCCcEE-----eccccCCHHHHH---HHHHc-CCCEE
Q 015424 197 FDPVEIARSYEKGGAACLSILTDEK--YFKGSFENLEAVRSAGVKCPLL-----CKEFIVDAWQIY---YARTK-GADAV 265 (407)
Q Consensus 197 ~dp~~iA~ay~~~GA~aISVLTd~~--~F~Gs~edL~~Vr~a~v~lPVL-----~KDFIid~~QI~---eAr~~-GADaV 265 (407)
-++..++++....|+.-+-|---.. .-.|....+..++. .++.+| |+.- +.-|. .||++ |-|-|
T Consensus 27 ~s~~~~~~av~asg~~ivTvAlRR~~~~~~~~~~~l~~l~~--~~~~~LPNTaGc~ta---eEAv~tArlARE~~~t~wi 101 (262)
T COG2022 27 PSPAVLAEAVRASGSEIVTVALRRVNATRPGGDGILDLLIP--LGVTLLPNTAGCRTA---EEAVRTARLAREALGTNWI 101 (262)
T ss_pred CCHHHHHHHHHhcCCceEEEEEEeecccCCCcchHHHHhhh--cCcEeCCCccccCCH---HHHHHHHHHHHHHccCCeE
Confidence 3788899999999988776642221 22344555665765 367777 3321 11222 24544 55665
Q ss_pred EEe----cc-CCCHHHHHHHHHHHHHc---CCcEEEEeCC-HHHHHHHhcccCCcEEEeeccccccccccccccccccCc
Q 015424 266 LLI----AA-VLPDLDIRYMTKICKLL---GLTALVEVHD-EREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDN 336 (407)
Q Consensus 266 LLi----aa-iL~~~~L~~Li~~a~~L---GL~aLVEVht-~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl 336 (407)
=|= .. +++| --++++.++.| |..+|.=+++ .--+++..+. |+..|.=-. --||++-|..+ .
T Consensus 102 KlEVi~d~~tLlPD--~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLee~-GcaavMPl~-aPIGSg~G~~n------~ 171 (262)
T COG2022 102 KLEVIGDEKTLLPD--PIETLKAAEQLVKEGFVVLPYTTDDPVLARRLEEA-GCAAVMPLG-APIGSGLGLQN------P 171 (262)
T ss_pred EEEEecCCcccCCC--hHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHHhc-CceEecccc-ccccCCcCcCC------H
Confidence 542 22 3333 35667777765 9999998885 4445555565 776543211 11222222222 2
Q ss_pred hhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhh
Q 015424 337 SNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 400 (407)
Q Consensus 337 ~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L 400 (407)
....-+++. .++++|.-.||.+|.|+..++++||||||+-+++-+..||..-.+.+
T Consensus 172 ~~l~iiie~--------a~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af 227 (262)
T COG2022 172 YNLEIIIEE--------ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAF 227 (262)
T ss_pred HHHHHHHHh--------CCCCEEEeCCCCChhHHHHHHhcccceeehhhHhhccCChHHHHHHH
Confidence 222333332 37899999999999999999999999999999999999998665544
No 211
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=97.21 E-value=0.008 Score=61.58 Aligned_cols=144 Identities=15% Similarity=0.134 Sum_probs=99.9
Q ss_pred CCCcEEeccccCCHHHHHHHH----HcCCCEEEEecc--------------C-CCHHHHHHHHHHHHH-cCCcEEE----
Q 015424 238 VKCPLLCKEFIVDAWQIYYAR----TKGADAVLLIAA--------------V-LPDLDIRYMTKICKL-LGLTALV---- 293 (407)
Q Consensus 238 v~lPVL~KDFIid~~QI~eAr----~~GADaVLLiaa--------------i-L~~~~L~~Li~~a~~-LGL~aLV---- 293 (407)
.+-|++..=..-|+..+.+|. .++ |+|-|..- + +..+-+.++++..+. ++..+=+
T Consensus 72 ~D~PLIvQf~~ndp~~ll~Aa~lv~~y~-D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI 150 (358)
T KOG2335|consen 72 EDRPLIVQFGGNDPENLLKAARLVQPYC-DGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRI 150 (358)
T ss_pred CCCceEEEEcCCCHHHHHHHHHHhhhhc-CcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEe
Confidence 367777665566777666553 223 77766542 2 255667778877664 6666533
Q ss_pred --EeC-CHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHH
Q 015424 294 --EVH-DEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDI 370 (407)
Q Consensus 294 --EVh-t~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~ 370 (407)
+.| |.+.+....++ |++++.|-.|---.-|. +++-.|++....+.+.+ + ++++++=|+|.+++|+
T Consensus 151 ~~d~~kTvd~ak~~e~a-G~~~ltVHGRtr~~kg~----~~~pad~~~i~~v~~~~------~-~ipviaNGnI~~~~d~ 218 (358)
T KOG2335|consen 151 FVDLEKTVDYAKMLEDA-GVSLLTVHGRTREQKGL----KTGPADWEAIKAVRENV------P-DIPVIANGNILSLEDV 218 (358)
T ss_pred cCcHHHHHHHHHHHHhC-CCcEEEEecccHHhcCC----CCCCcCHHHHHHHHHhC------c-CCcEEeeCCcCcHHHH
Confidence 333 44555555554 99999998884311111 47778999988887763 2 3899999999999999
Q ss_pred HHHHH-cCCCEEEEcccccCCCChH
Q 015424 371 AYVQE-AGVKAVLVGESIVKQDDPG 394 (407)
Q Consensus 371 ~~l~~-~GadaVLVGeaLmk~~dp~ 394 (407)
.++.+ .|+|||.+|++++..+-..
T Consensus 219 ~~~~~~tG~dGVM~arglL~NPa~F 243 (358)
T KOG2335|consen 219 ERCLKYTGADGVMSARGLLYNPALF 243 (358)
T ss_pred HHHHHHhCCceEEecchhhcCchhh
Confidence 99998 8999999999999876543
No 212
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=97.21 E-value=0.017 Score=58.34 Aligned_cols=153 Identities=12% Similarity=0.095 Sum_probs=102.4
Q ss_pred CCcEEeccccCCHHHHHHH----HHcCCCEEEEecc--------------CC-CHHHHHHHHHHHHH-cCCcEEEEeC--
Q 015424 239 KCPLLCKEFIVDAWQIYYA----RTKGADAVLLIAA--------------VL-PDLDIRYMTKICKL-LGLTALVEVH-- 296 (407)
Q Consensus 239 ~lPVL~KDFIid~~QI~eA----r~~GADaVLLiaa--------------iL-~~~~L~~Li~~a~~-LGL~aLVEVh-- 296 (407)
+.|+...=|.-|+.++.+| ..+|+|+|=|+.. ++ .++.+.++++..++ .+..+-|-+.
T Consensus 54 e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g 133 (318)
T TIGR00742 54 ESPVALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIG 133 (318)
T ss_pred CCcEEEEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 5677777777777776554 2468888887654 22 33456677777665 4666655553
Q ss_pred -----CHH---H-HHHHhcccCCcEEEeecccccccccccccc----ccccCchhHHHHhhcccccccccCCceEEEeeC
Q 015424 297 -----DER---E-MDRVLGIEGIELIGINNRNLAISIFSYRTE----TFEVDNSNTKKLLEGERGEIIRQKNIIVVGESG 363 (407)
Q Consensus 297 -----t~e---E-lerAl~l~Ga~iIGINnRdL~~~~~~~t~~----Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESG 363 (407)
+.+ + ++.+.+. |++.|.|-.|-... -+|+.. ....|++...++.+. + .+++||+-||
T Consensus 134 ~~~~~~~~~~~~~~~~l~~~-G~~~itvHgRt~~~--qg~sg~~~~~~~~~~~~~i~~vk~~-----~--~~ipVi~NGd 203 (318)
T TIGR00742 134 IDPLDSYEFLCDFVEIVSGK-GCQNFIVHARKAWL--SGLSPKENREIPPLRYERVYQLKKD-----F--PHLTIEINGG 203 (318)
T ss_pred CCCcchHHHHHHHHHHHHHc-CCCEEEEeCCchhh--cCCCccccccCCchhHHHHHHHHHh-----C--CCCcEEEECC
Confidence 112 2 3444454 99999998885211 123221 122466655566543 1 2589999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 364 LFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 364 I~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
|.|++|+.++.. |||+|.||.+++..+.....+.+++.
T Consensus 204 I~s~~da~~~l~-g~dgVMigRgal~nP~if~~~~~~l~ 241 (318)
T TIGR00742 204 IKNSEQIKQHLS-HVDGVMVGREAYENPYLLANVDREIF 241 (318)
T ss_pred cCCHHHHHHHHh-CCCEEEECHHHHhCCHHHHHHHHHhc
Confidence 999999999986 99999999999999998888877653
No 213
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=97.20 E-value=0.017 Score=58.57 Aligned_cols=146 Identities=19% Similarity=0.151 Sum_probs=104.8
Q ss_pred CCcEEeccccCCHHHHHHH----HHcCCCEEEEecc--------------CC-CHHHHHHHHHHHHH-cC-CcE------
Q 015424 239 KCPLLCKEFIVDAWQIYYA----RTKGADAVLLIAA--------------VL-PDLDIRYMTKICKL-LG-LTA------ 291 (407)
Q Consensus 239 ~lPVL~KDFIid~~QI~eA----r~~GADaVLLiaa--------------iL-~~~~L~~Li~~a~~-LG-L~a------ 291 (407)
.-|+...=+.-||..+.+| -..|+|.|-|++- +| +++.+.++++..++ .+ +.+
T Consensus 66 e~p~~vQl~gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRl 145 (323)
T COG0042 66 ERPVAVQLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRL 145 (323)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 5566666666778766664 3678888888643 33 55667777777665 33 444
Q ss_pred -EEEeC-CHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHH
Q 015424 292 -LVEVH-DEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDD 369 (407)
Q Consensus 292 -LVEVh-t~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD 369 (407)
|=+-| +..|+.+++...|++.+.|-.|.-.. . .+...|++...++.+.+ .++++|+=|+|.|++|
T Consensus 146 G~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~---~---y~~~ad~~~I~~vk~~~-------~~ipvi~NGdI~s~~~ 212 (323)
T COG0042 146 GWDDDDILALEIARILEDAGADALTVHGRTRAQ---G---YLGPADWDYIKELKEAV-------PSIPVIANGDIKSLED 212 (323)
T ss_pred ccCcccccHHHHHHHHHhcCCCEEEEecccHHh---c---CCCccCHHHHHHHHHhC-------CCCeEEeCCCcCCHHH
Confidence 33444 45567676665589999999885411 1 22337888888887652 2389999999999999
Q ss_pred HHHHHHc-CCCEEEEcccccCCCChHHHH
Q 015424 370 IAYVQEA-GVKAVLVGESIVKQDDPGKGI 397 (407)
Q Consensus 370 ~~~l~~~-GadaVLVGeaLmk~~dp~~~i 397 (407)
++++.+. |+|||.||.+.+..+.....+
T Consensus 213 a~~~l~~tg~DgVMigRga~~nP~l~~~i 241 (323)
T COG0042 213 AKEMLEYTGADGVMIGRGALGNPWLFRQI 241 (323)
T ss_pred HHHHHHhhCCCEEEEcHHHccCCcHHHHH
Confidence 9999985 799999999999999987766
No 214
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=97.20 E-value=0.0031 Score=62.05 Aligned_cols=75 Identities=28% Similarity=0.281 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHcCCcEEEEEecCCcC-CC--CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCC
Q 015424 197 FDPVEIARSYEKGGAACLSILTDEKYF-KG--SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (407)
Q Consensus 197 ~dp~~iA~ay~~~GA~aISVLTd~~~F-~G--s~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~ 273 (407)
.||. +|+.+++.|++++.-+.-|=-- +| +..+|+.+++. .++||++.-.|-.+.++++|.++|||+||+.+++..
T Consensus 146 ~D~v-~a~rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~e~-~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIak 223 (267)
T CHL00162 146 ADPM-LAKHLEDIGCATVMPLGSPIGSGQGLQNLLNLQIIIEN-AKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQ 223 (267)
T ss_pred CCHH-HHHHHHHcCCeEEeeccCcccCCCCCCCHHHHHHHHHc-CCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeec
Confidence 3665 8999999999999999766321 22 67899999986 789999999999999999999999999999988873
No 215
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.17 E-value=0.0064 Score=64.54 Aligned_cols=122 Identities=15% Similarity=0.197 Sum_probs=90.0
Q ss_pred CCCCCCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEec---
Q 015424 193 LREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA--- 269 (407)
Q Consensus 193 i~~~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLia--- 269 (407)
+..+.+..+.++++.++|+..|-|-+....-.+-.+.++.+|+...++||+.++ +.+..+...+..+|||+|-+..
T Consensus 223 i~~~~~~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~-v~t~e~a~~l~~aGad~i~vg~g~g 301 (486)
T PRK05567 223 VGVGADNEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGN-VATAEAARALIEAGADAVKVGIGPG 301 (486)
T ss_pred cccCcchHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEec-cCCHHHHHHHHHcCCCEEEECCCCC
Confidence 443346688999999999998755443344456778888898753489999966 6888899999999999997631
Q ss_pred -----cCC---CHHHHHHH---HHHHHHcCCcEEE--EeCCHHHHHHHhcccCCcEEEee
Q 015424 270 -----AVL---PDLDIRYM---TKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGIN 316 (407)
Q Consensus 270 -----aiL---~~~~L~~L---i~~a~~LGL~aLV--EVht~eElerAl~l~Ga~iIGIN 316 (407)
..+ ...++..+ .+.++..|+.++. -+++..|+.+|+.+ ||+.+.+-
T Consensus 302 s~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~-GA~~v~~G 360 (486)
T PRK05567 302 SICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAA-GASAVMLG 360 (486)
T ss_pred ccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHh-CCCEEEEC
Confidence 111 11234444 4444567999999 78999999999998 99988874
No 216
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=97.16 E-value=0.0051 Score=63.17 Aligned_cols=177 Identities=17% Similarity=0.189 Sum_probs=100.2
Q ss_pred HHHHHHHHHHcCCcEEEEEecCCcCCCCHH----HHHHHHhc--------CCCCcEEeccccC-CHHH-HHHHHHcCCCE
Q 015424 199 PVEIARSYEKGGAACLSILTDEKYFKGSFE----NLEAVRSA--------GVKCPLLCKEFIV-DAWQ-IYYARTKGADA 264 (407)
Q Consensus 199 p~~iA~ay~~~GA~aISVLTd~~~F~Gs~e----dL~~Vr~a--------~v~lPVL~KDFIi-d~~Q-I~eAr~~GADa 264 (407)
-.++|.++.+.|. |.|+-- .++.+ .++.+++. ...+.|-.-=.+. +.++ +.+..++|+|.
T Consensus 50 e~~mAiama~~Gg--lgvih~----~~~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~er~~~L~~agvD~ 123 (352)
T PF00478_consen 50 ESEMAIAMARLGG--LGVIHR----NMSIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFERAEALVEAGVDV 123 (352)
T ss_dssp SHHHHHHHHHTTS--EEEEES----SSCHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHHHHHHHHHTT-SE
T ss_pred hHHHHHHHHHhcC--CceecC----CCCHHHHHHHHhhhccccccccccccccceEEEEecCCHHHHHHHHHHHHcCCCE
Confidence 3478888877763 666632 25544 33344321 0111111100112 2344 44446689999
Q ss_pred EEEeccCCCHHHHHHHHHHHHH-cC-CcEEEE-eCCHHHHHHHhcccCCcEEEeecccccccccccccccc-cc---Cch
Q 015424 265 VLLIAAVLPDLDIRYMTKICKL-LG-LTALVE-VHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETF-EV---DNS 337 (407)
Q Consensus 265 VLLiaaiL~~~~L~~Li~~a~~-LG-L~aLVE-Vht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf-~v---Dl~ 337 (407)
+++..+--..+...++++..++ ++ +.+++- |-|.+-++..+++ |++.|=|. ++||..-|+... .+ -+.
T Consensus 124 ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~a-Gad~vkVG----iGpGsiCtTr~v~GvG~PQ~t 198 (352)
T PF00478_consen 124 IVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDA-GADAVKVG----IGPGSICTTREVTGVGVPQLT 198 (352)
T ss_dssp EEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHT-T-SEEEES----SSSSTTBHHHHHHSBSCTHHH
T ss_pred EEccccCccHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHc-CCCEEEEe----ccCCcccccccccccCCcHHH
Confidence 9999887655555555555554 55 666653 6688888888886 99976552 233333322211 11 122
Q ss_pred hHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015424 338 NTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 391 (407)
Q Consensus 338 ~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 391 (407)
...+.++.. ...++++||-|||++.-|+.+...+|||+|.+|+.|-...
T Consensus 199 Av~~~a~~a-----~~~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt~ 247 (352)
T PF00478_consen 199 AVYECAEAA-----RDYGVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGTD 247 (352)
T ss_dssp HHHHHHHHH-----HCTTSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTBT
T ss_pred HHHHHHHHh-----hhccCceeecCCcCcccceeeeeeecccceeechhhccCc
Confidence 222333321 1247899999999999999999999999999999887654
No 217
>PRK14567 triosephosphate isomerase; Provisional
Probab=97.15 E-value=0.0028 Score=62.33 Aligned_cols=132 Identities=16% Similarity=0.083 Sum_probs=85.8
Q ss_pred HHHcCCCEEEEeccCC------CHHHHHHHHHHHHHcCCcEEEEeCCHHHHH--------------HHhc------ccCC
Q 015424 257 ARTKGADAVLLIAAVL------PDLDIRYMTKICKLLGLTALVEVHDEREMD--------------RVLG------IEGI 310 (407)
Q Consensus 257 Ar~~GADaVLLiaaiL------~~~~L~~Li~~a~~LGL~aLVEVht~eEle--------------rAl~------l~Ga 310 (407)
.+.+|++.|+++++=. +++.+..=++.|.+.||.++++|-...|-. ..+. + ..
T Consensus 81 Lkd~G~~yviiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pI~CiGEt~eere~g~~~~vv~~Ql~~~l~~i~~~~~-~~ 159 (253)
T PRK14567 81 LEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRQSGKLKQVLATQLSLILENLSVEQL-AK 159 (253)
T ss_pred HHHcCCCEEEECcccccCccCCCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCCHHHHHHHHHHHHHccCCHHHh-CC
Confidence 4677999999999822 455566666778889999999998644322 1221 1 11
Q ss_pred cEEEeeccccccccccccccccccCchhHHHHhhcccc------cccccCCceEEEeeCCCCHHHHHHHHHcC-CCEEEE
Q 015424 311 ELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERG------EIIRQKNIIVVGESGLFTPDDIAYVQEAG-VKAVLV 383 (407)
Q Consensus 311 ~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~------~~i~~~~v~vVAESGI~t~eD~~~l~~~G-adaVLV 383 (407)
-+|.....=.||||...+ ++...+....++. +.+ ..++.++-.|++ +++++..+.+.+ +||+||
T Consensus 160 ivIAYEPvWAIGTG~~as-------~e~i~~~~~~IR~~l~~~~~~~-a~~v~IlYGGSV-~~~N~~~l~~~~diDG~LV 230 (253)
T PRK14567 160 VVIAYEPVWAIGTGVVAS-------LEQIQETHQFIRSLLAKVDERL-AKNIKIVYGGSL-KAENAKDILSLPDVDGGLI 230 (253)
T ss_pred EEEEECCHHHhCCCCCCC-------HHHHHHHHHHHHHHHHhhcccc-cccceEEEcCcC-CHHHHHHHHcCCCCCEEEe
Confidence 356555544444433222 2233332222221 111 235788899999 999999999888 999999
Q ss_pred cccccCCCChHHHHH
Q 015424 384 GESIVKQDDPGKGIT 398 (407)
Q Consensus 384 GeaLmk~~dp~~~i~ 398 (407)
|.+-+++++..+-++
T Consensus 231 GgasL~~~~F~~Ii~ 245 (253)
T PRK14567 231 GGASLKAAEFNEIIN 245 (253)
T ss_pred ehhhhcHHHHHHHHH
Confidence 999998887766554
No 218
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.15 E-value=0.0019 Score=61.10 Aligned_cols=92 Identities=17% Similarity=0.204 Sum_probs=64.9
Q ss_pred eCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHH
Q 015424 295 VHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQ 374 (407)
Q Consensus 295 Vht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~ 374 (407)
.++..++-+.+...|++.+-+..-|-+. ..-..|++...++.+. .++++.+-|||.+.+|++++.
T Consensus 29 ~~~~~~~a~~~~~~g~~~i~v~dld~~~-------~g~~~~~~~i~~i~~~--------~~~pv~~~GGI~~~ed~~~~~ 93 (233)
T PRK00748 29 SDDPVAQAKAWEDQGAKWLHLVDLDGAK-------AGKPVNLELIEAIVKA--------VDIPVQVGGGIRSLETVEALL 93 (233)
T ss_pred cCCHHHHHHHHHHcCCCEEEEEeCCccc-------cCCcccHHHHHHHHHH--------CCCCEEEcCCcCCHHHHHHHH
Confidence 3577776666543478877775433200 1223567777777664 256889999999999999999
Q ss_pred HcCCCEEEEcccccCCCChHHHHHhhh
Q 015424 375 EAGVKAVLVGESIVKQDDPGKGITGLF 401 (407)
Q Consensus 375 ~~GadaVLVGeaLmk~~dp~~~i~~L~ 401 (407)
++||++|++|+++++.++..+.+.+.+
T Consensus 94 ~~Ga~~vilg~~~l~~~~~l~ei~~~~ 120 (233)
T PRK00748 94 DAGVSRVIIGTAAVKNPELVKEACKKF 120 (233)
T ss_pred HcCCCEEEECchHHhCHHHHHHHHHHh
Confidence 999999999999999876554444433
No 219
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=97.15 E-value=0.0056 Score=61.85 Aligned_cols=160 Identities=28% Similarity=0.297 Sum_probs=96.2
Q ss_pred CHHHHHHHHHHcC-CcEEEEEecCCcCCC------CHHHHH----HHHhcCCCCcEEeccc--cCCHHHHHH-HHHcCCC
Q 015424 198 DPVEIARSYEKGG-AACLSILTDEKYFKG------SFENLE----AVRSAGVKCPLLCKEF--IVDAWQIYY-ARTKGAD 263 (407)
Q Consensus 198 dp~~iA~ay~~~G-A~aISVLTd~~~F~G------s~edL~----~Vr~a~v~lPVL~KDF--Iid~~QI~e-Ar~~GAD 263 (407)
+..+++...++.| |++|-++.--..-.| +++.+. .+++. +++||+.|=- +.|-.++.. +.++|||
T Consensus 110 ~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~-~~~Pv~vKl~P~~~di~~iA~~~~~~g~D 188 (310)
T COG0167 110 AWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAA-TKVPVFVKLAPNITDIDEIAKAAEEAGAD 188 (310)
T ss_pred HHHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhc-ccCceEEEeCCCHHHHHHHHHHHHHcCCc
Confidence 5677888888888 788877744333333 333433 44554 7899998731 233335544 4688999
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHh
Q 015424 264 AVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLL 343 (407)
Q Consensus 264 aVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~ 343 (407)
+|.++=+..+...+ ..+. . +- .+. -..-|+..+-+ ..+-+....++.
T Consensus 189 gl~~~NT~~~~~~i--d~~~-~--~~--------------~~~---~~~GGLSG~~i-----------kp~al~~v~~l~ 235 (310)
T COG0167 189 GLIAINTTKSGMKI--DLET-K--KP--------------VLA---NETGGLSGPPL-----------KPIALRVVAELY 235 (310)
T ss_pred EEEEEeeccccccc--cccc-c--cc--------------ccC---cCCCCcCcccc-----------hHHHHHHHHHHH
Confidence 99988776643211 0010 0 00 000 01222221111 223333444554
Q ss_pred hcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCC-CChHHHH
Q 015424 344 EGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ-DDPGKGI 397 (407)
Q Consensus 344 ~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~-~dp~~~i 397 (407)
+. + ..++++|.-|||.|.+|+.....+||++|=||++++.. +...+.+
T Consensus 236 ~~-----~-~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I 284 (310)
T COG0167 236 KR-----L-GGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEI 284 (310)
T ss_pred Hh-----c-CCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeeeCchHHHHH
Confidence 43 2 24689999999999999999999999999999999987 6654443
No 220
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.13 E-value=0.0041 Score=59.23 Aligned_cols=87 Identities=18% Similarity=0.309 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHHcCCcEEEEEec--CCcCCC-CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCC
Q 015424 196 DFDPVEIARSYEKGGAACLSILTD--EKYFKG-SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (407)
Q Consensus 196 ~~dp~~iA~ay~~~GA~aISVLTd--~~~F~G-s~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (407)
..++.++++.+.+.|+..|.+..- .....| +++.++.+++. +++||+.-..|.++.++.+...+|||+|++..+++
T Consensus 148 ~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~-~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~ 226 (241)
T PRK13585 148 GYTPVEAAKRFEELGAGSILFTNVDVEGLLEGVNTEPVKELVDS-VDIPVIASGGVTTLDDLRALKEAGAAGVVVGSALY 226 (241)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHh
Confidence 348999999999999999987532 223333 46677888876 89999999999999999999999999999998887
Q ss_pred CH-HHHHHHHHH
Q 015424 273 PD-LDIRYMTKI 283 (407)
Q Consensus 273 ~~-~~L~~Li~~ 283 (407)
.. ..+.++..+
T Consensus 227 ~~~~~~~~~~~~ 238 (241)
T PRK13585 227 KGKFTLEEAIEA 238 (241)
T ss_pred cCCcCHHHHHHH
Confidence 54 345444443
No 221
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=97.12 E-value=0.0044 Score=62.54 Aligned_cols=95 Identities=19% Similarity=0.181 Sum_probs=71.4
Q ss_pred HHHHHHHHH------cCCcEEEEeCCHHHHHHHhc------ccCCcEEEeeccccccccccccccccccCchhHHHHhhc
Q 015424 278 RYMTKICKL------LGLTALVEVHDEREMDRVLG------IEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEG 345 (407)
Q Consensus 278 ~~Li~~a~~------LGL~aLVEVht~eElerAl~------l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~ 345 (407)
.+.++.+++ .....-|||.|.+|+..|++ + |+++|-..|-++ +......+++...+.++.
T Consensus 187 ~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~a-gaDiImLDnm~~-------~~~~~~~~~e~l~~av~~ 258 (308)
T PLN02716 187 TNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKT-SLTRVMLDNMVV-------PLENGDVDVSMLKEAVEL 258 (308)
T ss_pred HHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccC-CCCEEEeCCCcc-------cccccCCCHHHHHHHHHh
Confidence 345555555 23568999999999999999 8 999999987744 114445566666666654
Q ss_pred ccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccc
Q 015424 346 ERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESI 387 (407)
Q Consensus 346 ~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaL 387 (407)
+ ...+++-+.||| |++.+......|+|.+.+|.--
T Consensus 259 ~------~~~~~lEaSGGI-t~~ni~~yA~tGVD~Is~Galt 293 (308)
T PLN02716 259 I------NGRFETEASGNV-TLDTVHKIGQTGVTYISSGALT 293 (308)
T ss_pred h------CCCceEEEECCC-CHHHHHHHHHcCCCEEEeCccc
Confidence 2 234678899999 9999999999999999999643
No 222
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=97.12 E-value=0.011 Score=60.05 Aligned_cols=172 Identities=12% Similarity=0.062 Sum_probs=100.3
Q ss_pred HHHHHHHHHcCCcEEEEEecCCcCCCCHHHH-HHHHhcC-CCCcEEeccccCCH--HHHHHHHHcC--CCEEEEeccCCC
Q 015424 200 VEIARSYEKGGAACLSILTDEKYFKGSFENL-EAVRSAG-VKCPLLCKEFIVDA--WQIYYARTKG--ADAVLLIAAVLP 273 (407)
Q Consensus 200 ~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL-~~Vr~a~-v~lPVL~KDFIid~--~QI~eAr~~G--ADaVLLiaaiL~ 273 (407)
.++|+.+.+.|. ++++-. | ++++. ..+|+.. ..+++-.-=.+.+. ..+..-.++| +|+|.+..+-=-
T Consensus 48 ~~LA~~a~~~G~--~~i~hK---~--~~E~~~sfvrk~k~~~L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~ 120 (321)
T TIGR01306 48 EKLAEQLAENGY--FYIMHR---F--DEESRIPFIKDMQERGLFASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGH 120 (321)
T ss_pred HHHHHHHHHcCC--EEEEec---C--CHHHHHHHHHhccccccEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCc
Confidence 457777777664 333322 1 45542 2344421 12333222111222 2355556778 899999887554
Q ss_pred HHHHHHHHHHHHH-c-CCcEEEE-eCCHHHHHHHhcccCCcEEEeeccccccccccc-cccc--cc-cC--chhHHHHhh
Q 015424 274 DLDIRYMTKICKL-L-GLTALVE-VHDEREMDRVLGIEGIELIGINNRNLAISIFSY-RTET--FE-VD--NSNTKKLLE 344 (407)
Q Consensus 274 ~~~L~~Li~~a~~-L-GL~aLVE-Vht~eElerAl~l~Ga~iIGINnRdL~~~~~~~-t~~T--f~-vD--l~~t~~L~~ 344 (407)
.....+.++..++ + +..+++- |-+.+.+..+.++ |++.|-+.+ ++|..- |... .. .+ +....+..+
T Consensus 121 s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~a-Gad~I~V~~----G~G~~~~tr~~~g~g~~~~~l~ai~ev~~ 195 (321)
T TIGR01306 121 SNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENA-GADATKVGI----GPGKVCITKIKTGFGTGGWQLAALRWCAK 195 (321)
T ss_pred hHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHc-CcCEEEECC----CCCccccceeeeccCCCchHHHHHHHHHH
Confidence 4444445555554 3 4556666 8899999999997 999876541 111110 0000 00 11 112222222
Q ss_pred cccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015424 345 GERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 391 (407)
Q Consensus 345 ~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 391 (407)
. .++++|+-|||.+..|+.++..+|||+|.+|..|-...
T Consensus 196 a--------~~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag~~ 234 (321)
T TIGR01306 196 A--------ARKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAGHE 234 (321)
T ss_pred h--------cCCeEEEECCcCcHHHHHHHHHcCCCEEeechhhcCcc
Confidence 1 25799999999999999999999999999998775433
No 223
>PLN02561 triosephosphate isomerase
Probab=97.10 E-value=0.0037 Score=61.45 Aligned_cols=160 Identities=11% Similarity=0.032 Sum_probs=96.4
Q ss_pred CHHHHHHHHhcCC--CCcEEeccc-----c-----CCHHHHHHHHHcCCCEEEEeccCC------CHHHHHHHHHHHHHc
Q 015424 226 SFENLEAVRSAGV--KCPLLCKEF-----I-----VDAWQIYYARTKGADAVLLIAAVL------PDLDIRYMTKICKLL 287 (407)
Q Consensus 226 s~edL~~Vr~a~v--~lPVL~KDF-----I-----id~~QI~eAr~~GADaVLLiaaiL------~~~~L~~Li~~a~~L 287 (407)
++-+|..+.+. + ++.|-..|. . +.+ ...+++||+.|+++++=. +++.+..-++.|.+.
T Consensus 45 p~~~L~~~~~~-~~~~i~vgAQnv~~~~~Ga~TGevS~---~mL~d~G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~ 120 (253)
T PLN02561 45 PFVFLPLVKSL-LRPDFQVAAQNCWVKKGGAFTGEISA---EMLVNLGIPWVILGHSERRALLGESNEFVGDKVAYALSQ 120 (253)
T ss_pred CHHHHHHHHHH-hccCCeEEeccccCcCCCCccCcCCH---HHHHHcCCCEEEECcccccCccCCChHHHHHHHHHHHHC
Confidence 45566666543 2 355555541 1 333 335677999999999822 456667777788899
Q ss_pred CCcEEEEeCCH--------------HHHHHHhccc---CCcEEEeeccccccccccccccccccCchhHHHHhhcccccc
Q 015424 288 GLTALVEVHDE--------------REMDRVLGIE---GIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEI 350 (407)
Q Consensus 288 GL~aLVEVht~--------------eElerAl~l~---Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~ 350 (407)
||.++++|-.. ++++.++..- ...+|.....-.||+|..-++...+--.....+.+....+..
T Consensus 121 gl~pIvCvGE~~~er~~~~~~~~v~~Ql~~~l~~v~~~~~iiIAYEPvWAIGtG~~as~~~~~~v~~~Ir~~l~~~~~~~ 200 (253)
T PLN02561 121 GLKVIACVGETLEQRESGSTMDVVAAQTKAIADKVSDWANVVLAYEPVWAIGTGKVATPAQAQEVHDELRKWLHKNVSPE 200 (253)
T ss_pred cCEEEEEcCCCHHHHhcCCHHHHHHHHHHHHHhccccccceEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999975 5676666420 124677766666554433222211100011111111000111
Q ss_pred cccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015424 351 IRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 390 (407)
Q Consensus 351 i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~ 390 (407)
. ..++.++-.|+|+.-.+...+...|+||+|||.+=.++
T Consensus 201 ~-a~~i~ILYGGSV~~~N~~~l~~~~~iDG~LVG~ASL~~ 239 (253)
T PLN02561 201 V-AATTRIIYGGSVTGANCKELAAQPDVDGFLVGGASLKP 239 (253)
T ss_pred c-cccceEEEeCCcCHHHHHHHhcCCCCCeEEEehHhhHH
Confidence 1 23578999999977777777788899999999998874
No 224
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=97.10 E-value=0.0069 Score=61.66 Aligned_cols=94 Identities=19% Similarity=0.272 Sum_probs=73.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhccccccc
Q 015424 272 LPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEII 351 (407)
Q Consensus 272 L~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i 351 (407)
|+.+++++|.++|+++||+.+.++.|.+.++...++ |++++=|-.+|+ . |+.....+++
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~-~v~~~KIaS~~~---------~----n~pLL~~~A~------- 131 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLSTPFDLESADFLEDL-GVPRFKIPSGEI---------T----NAPLLKKIAR------- 131 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc-CCCEEEECcccc---------c----CHHHHHHHHh-------
Confidence 567889999999999999999999999999999998 999999988888 3 4444445443
Q ss_pred ccCCceEEEeeCCCCHHHHHHH----HHcCCCE--EEE--ccccc
Q 015424 352 RQKNIIVVGESGLFTPDDIAYV----QEAGVKA--VLV--GESIV 388 (407)
Q Consensus 352 ~~~~v~vVAESGI~t~eD~~~l----~~~Gada--VLV--GeaLm 388 (407)
.+.++|..-|..|.+++... .+.|.+. +.+ ..+-+
T Consensus 132 --~gkPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~Y 174 (329)
T TIGR03569 132 --FGKPVILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEY 174 (329)
T ss_pred --cCCcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCC
Confidence 35678888888999998654 4567753 444 44443
No 225
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=97.09 E-value=0.0039 Score=64.08 Aligned_cols=143 Identities=13% Similarity=0.031 Sum_probs=89.1
Q ss_pred HHHcCCCEEEEeccCC------CHHHHHHHHHHHHHcCCcEEEEeCCHHH--------------HHHHhc------ccCC
Q 015424 257 ARTKGADAVLLIAAVL------PDLDIRYMTKICKLLGLTALVEVHDERE--------------MDRVLG------IEGI 310 (407)
Q Consensus 257 Ar~~GADaVLLiaaiL------~~~~L~~Li~~a~~LGL~aLVEVht~eE--------------lerAl~------l~Ga 310 (407)
.+.+||+.|+++++=. +++.+..=++.|.+.||.++++|-...| ++..++ + ..
T Consensus 91 L~d~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIvCiGE~~eer~~g~~~~v~~~Ql~~~l~~v~~~~~-~~ 169 (355)
T PRK14905 91 LKELGIELVMIGHSERRHVLKETDQEENEKVLAALKHGFITLLCIGETLEQKNYNISDEVLRTQLKIGLHGVSAEQL-PH 169 (355)
T ss_pred HHHcCCCEEEECcccccCcccccHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhccCHHHHHHHHHHHHHccCCHhhc-Cc
Confidence 4667999999999822 4455666677788899999999997544 222221 1 12
Q ss_pred cEEEeecccccccc-ccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccC
Q 015424 311 ELIGINNRNLAISI-FSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK 389 (407)
Q Consensus 311 ~iIGINnRdL~~~~-~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk 389 (407)
.+|.....-.|||+ ..-++...+-..+...+.+....+.. ..++.++..|+|+.-.+...+...++||+|||.+-++
T Consensus 170 ~vIAYEPvWAIGTgg~~as~~~~~~~~~~Ir~~l~~~~~~~--~~~v~ILYGGSV~~~N~~~l~~~~~iDG~LVG~asl~ 247 (355)
T PRK14905 170 LFIAYEPVWAIGEGGIPASAEYADEKHAIIKQCLFELFAEE--SKKIPVLYGGSVNLENANELIMKPHIDGLFIGRSAWD 247 (355)
T ss_pred eEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccc--cCceeEEEeCcCCHHHHHHHhcCCCCCEEEechhhcc
Confidence 46766666555542 11111111001111111111100110 1357899999997777777778889999999999999
Q ss_pred CCChHHHHHhhhc
Q 015424 390 QDDPGKGITGLFG 402 (407)
Q Consensus 390 ~~dp~~~i~~L~~ 402 (407)
++++.+.++.+.+
T Consensus 248 ~~~f~~Ii~~~~~ 260 (355)
T PRK14905 248 AQCFHALIADALK 260 (355)
T ss_pred HHHHHHHHHHHHH
Confidence 9999887777654
No 226
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=97.08 E-value=0.0058 Score=60.49 Aligned_cols=185 Identities=16% Similarity=0.198 Sum_probs=101.0
Q ss_pred HHHHHHHHHcCCcEEEEEecCCcCC------------CCHHH-----HHHHHhcCCCCcEEeccccCCHH-----HHHHH
Q 015424 200 VEIARSYEKGGAACLSILTDEKYFK------------GSFEN-----LEAVRSAGVKCPLLCKEFIVDAW-----QIYYA 257 (407)
Q Consensus 200 ~~iA~ay~~~GA~aISVLTd~~~F~------------Gs~ed-----L~~Vr~a~v~lPVL~KDFIid~~-----QI~eA 257 (407)
.-.|+..+++||+-|-++.-..|-. |+-.+ -+.|-....+.||++.=...||+ -+.+.
T Consensus 25 GlsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiLp~v~~tPViaGv~atDP~~~~~~fl~~l 104 (268)
T PF09370_consen 25 GLSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREILPVVKDTPVIAGVCATDPFRDMDRFLDEL 104 (268)
T ss_dssp HHHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG-SSS-EEEEE-TT-TT--HHHHHHHH
T ss_pred chhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhhhhccCCCEEEEecCcCCCCcHHHHHHHH
Confidence 3479999999999998874433211 11111 12222221368999766556664 35667
Q ss_pred HHcCCCEEEEecc--CCCH-------------HHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeecccccc
Q 015424 258 RTKGADAVLLIAA--VLPD-------------LDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAI 322 (407)
Q Consensus 258 r~~GADaVLLiaa--iL~~-------------~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~ 322 (407)
+..|-.+|.=--+ .++. +.=-++++.|+++||-.+.=|.|++|+++..++ |||+|-++- .|
T Consensus 105 k~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~yvf~~e~A~~M~~A-GaDiiv~H~-Gl-- 180 (268)
T PF09370_consen 105 KELGFSGVQNFPTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTAYVFNEEQARAMAEA-GADIIVAHM-GL-- 180 (268)
T ss_dssp HHHT-SEEEE-S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--EE-SHHHHHHHHHH-T-SEEEEE--SS--
T ss_pred HHhCCceEEECCcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeeeeecCHHHHHHHHHc-CCCEEEecC-Cc--
Confidence 8999999975433 2221 111358899999999999999999999999997 999998853 33
Q ss_pred ccccccccccccCchhHHHHhhcccc--cccccCCceEEEe-eCCCCHHHHHHHHHc--CCCEEEEcccccC
Q 015424 323 SIFSYRTETFEVDNSNTKKLLEGERG--EIIRQKNIIVVGE-SGLFTPDDIAYVQEA--GVKAVLVGESIVK 389 (407)
Q Consensus 323 ~~~~~t~~Tf~vDl~~t~~L~~~~~~--~~i~~~~v~vVAE-SGI~t~eD~~~l~~~--GadaVLVGeaLmk 389 (407)
|-.+.....-..+++.+.++++.+.. ..+.| ++++++- |-|.+|+|++++.+. |++|++-|+++=+
T Consensus 181 T~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~-dii~l~hGGPI~~p~D~~~~l~~t~~~~Gf~G~Ss~ER 251 (268)
T PF09370_consen 181 TTGGSIGAKTALSLEEAAERIQEIFDAARAVNP-DIIVLCHGGPIATPEDAQYVLRNTKGIHGFIGASSMER 251 (268)
T ss_dssp ----------S--HHHHHHHHHHHHHHHHCC-T-T-EEEEECTTB-SHHHHHHHHHH-TTEEEEEESTTTTH
T ss_pred cCCCCcCccccCCHHHHHHHHHHHHHHHHHhCC-CeEEEEeCCCCCCHHHHHHHHhcCCCCCEEecccchhh
Confidence 11111111112344444444433221 12334 4555555 459999999999866 5899998888754
No 227
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.06 E-value=0.0031 Score=59.87 Aligned_cols=94 Identities=14% Similarity=0.114 Sum_probs=69.1
Q ss_pred EeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHH
Q 015424 294 EVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYV 373 (407)
Q Consensus 294 EVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l 373 (407)
+..+..|+-+.++..|++-|-+...+-++ +...+|++...++.+. .++++++.|||++.+|+.++
T Consensus 28 ~~~dp~~~a~~~~~~g~~~i~i~dl~~~~-------~~~~~n~~~~~~i~~~--------~~~pv~~~ggi~~~~d~~~~ 92 (232)
T TIGR03572 28 YIGDPVNAARIYNAKGADELIVLDIDASK-------RGREPLFELISNLAEE--------CFMPLTVGGGIRSLEDAKKL 92 (232)
T ss_pred ECCCHHHHHHHHHHcCCCEEEEEeCCCcc-------cCCCCCHHHHHHHHHh--------CCCCEEEECCCCCHHHHHHH
Confidence 34577777666654577766665444411 2234677777787764 25688999999999999999
Q ss_pred HHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 374 QEAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 374 ~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
.+.|++.|++|+++++.++..+.+.+.++
T Consensus 93 ~~~G~~~vilg~~~l~~~~~~~~~~~~~~ 121 (232)
T TIGR03572 93 LSLGADKVSINTAALENPDLIEEAARRFG 121 (232)
T ss_pred HHcCCCEEEEChhHhcCHHHHHHHHHHcC
Confidence 99999999999999998876666665544
No 228
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.06 E-value=0.018 Score=60.16 Aligned_cols=143 Identities=17% Similarity=0.164 Sum_probs=97.6
Q ss_pred ccHHHHHHhhhhcCCCceEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCC
Q 015424 161 RDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKC 240 (407)
Q Consensus 161 ~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~l 240 (407)
++|..+.+.. .+++.|.|-+- + ..+-.+.+.+..++|++.|.|-+-.++-..-.+.++.+|+...++
T Consensus 129 ~~~~~a~~d~---~~~l~v~aavg---~-------~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~ 195 (404)
T PRK06843 129 EDFPNACKDL---NNKLRVGAAVS---I-------DIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNL 195 (404)
T ss_pred hhcchhhhhh---hcCeEEEEEEe---C-------CHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCC
Confidence 4444555544 36777877772 1 123447888889999999988554332222235567777652378
Q ss_pred cEEeccccCCHHHHHHHHHcCCCEEEEec--------cCC---CHHHHH---HHHHHHHHcCCcEEEE--eCCHHHHHHH
Q 015424 241 PLLCKEFIVDAWQIYYARTKGADAVLLIA--------AVL---PDLDIR---YMTKICKLLGLTALVE--VHDEREMDRV 304 (407)
Q Consensus 241 PVL~KDFIid~~QI~eAr~~GADaVLLia--------aiL---~~~~L~---~Li~~a~~LGL~aLVE--Vht~eElerA 304 (407)
+|+++| |.+..+...+..+|||+|.... ..+ ...++. .+.+.++..++.+++| +++..++.+|
T Consensus 196 ~vi~g~-V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KA 274 (404)
T PRK06843 196 DLIAGN-IVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKA 274 (404)
T ss_pred cEEEEe-cCCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHH
Confidence 899988 4777788889999999998653 111 112343 3455556679999999 7899999999
Q ss_pred hcccCCcEEEeecc
Q 015424 305 LGIEGIELIGINNR 318 (407)
Q Consensus 305 l~l~Ga~iIGINnR 318 (407)
+.+ ||+.+.+-..
T Consensus 275 Lal-GA~aVmvGs~ 287 (404)
T PRK06843 275 IAA-GADSVMIGNL 287 (404)
T ss_pred HHc-CCCEEEEcce
Confidence 998 9999988543
No 229
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=97.06 E-value=0.028 Score=55.32 Aligned_cols=190 Identities=17% Similarity=0.165 Sum_probs=124.4
Q ss_pred CCceEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEE-----ecCCcCCC----CHHHHHHHHhcCCCCcEEec
Q 015424 175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSIL-----TDEKYFKG----SFENLEAVRSAGVKCPLLCK 245 (407)
Q Consensus 175 ~~~~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVL-----Td~~~F~G----s~edL~~Vr~a~v~lPVL~K 245 (407)
+++.+||+ | +.+.......++|+...+.|+.....- |-+..|.| .+..|+.+++. ..+|++.-
T Consensus 24 ~~~~~IAG-----p--c~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp~s~~g~g~~gl~~l~~~~~~-~Gl~~~t~ 95 (260)
T TIGR01361 24 GSPIVIAG-----P--CSVESEEQIMETARFVKEAGAKILRGGAFKPRTSPYSFQGLGEEGLKLLRRAADE-HGLPVVTE 95 (260)
T ss_pred CcEEEEEe-----C--CccCCHHHHHHHHHHHHHHHHHhccCceecCCCCCccccccHHHHHHHHHHHHHH-hCCCEEEe
Confidence 45778999 3 344444455667777777666643321 22344665 34556666654 68999873
Q ss_pred cccCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHHHHhcc---cCCcEEEeeccc
Q 015424 246 EFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGI---EGIELIGINNRN 319 (407)
Q Consensus 246 DFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVh---t~eElerAl~l---~Ga~iIGINnRd 319 (407)
+.|+.++..+... +|.+-+.+..+.+.+ |++.+.+.|..+++... +.+|++.|++. .|..-|.+-.|.
T Consensus 96 --~~d~~~~~~l~~~-~d~lkI~s~~~~n~~---LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG 169 (260)
T TIGR01361 96 --VMDPRDVEIVAEY-ADILQIGARNMQNFE---LLKEVGKQGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERG 169 (260)
T ss_pred --eCChhhHHHHHhh-CCEEEECcccccCHH---HHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 4678899988888 998877777776644 56667788999999987 89998888754 255445555553
Q ss_pred cccccccc-cccccccCchhHHHHhhcccccccccCCceEEE-eeCCCC-----HHHHHHHHHcCCCEEEEcccccCC
Q 015424 320 LAISIFSY-RTETFEVDNSNTKKLLEGERGEIIRQKNIIVVG-ESGLFT-----PDDIAYVQEAGVKAVLVGESIVKQ 390 (407)
Q Consensus 320 L~~~~~~~-t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVA-ESGI~t-----~eD~~~l~~~GadaVLVGeaLmk~ 390 (407)
. ..| +.....+|+.....|.+. .+++|+. .+-... +.-......+||+|++|-.-+.-.
T Consensus 170 ~----s~y~~~~~~~~dl~~i~~lk~~--------~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~t~d 235 (260)
T TIGR01361 170 I----RTFEKATRNTLDLSAVPVLKKE--------THLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHPDPE 235 (260)
T ss_pred C----CCCCCCCcCCcCHHHHHHHHHh--------hCCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCCCcc
Confidence 3 123 223456888887777653 2456776 343333 556667788999999987766543
No 230
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=97.04 E-value=0.015 Score=60.18 Aligned_cols=119 Identities=17% Similarity=0.212 Sum_probs=85.7
Q ss_pred CCHHHHHHHHHHcCCcEEEEE--e-cCCcC--CCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEecc-
Q 015424 197 FDPVEIARSYEKGGAACLSIL--T-DEKYF--KGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA- 270 (407)
Q Consensus 197 ~dp~~iA~ay~~~GA~aISVL--T-d~~~F--~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa- 270 (407)
.+..++++..+++||+.|.+- | +..|+ .|.+.+|..+++. .++||+.++ +.+.....++..+|||+|+....
T Consensus 142 ~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~-~~IPVI~G~-V~t~e~A~~~~~aGaDgV~~G~gg 219 (369)
T TIGR01304 142 QNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGE-LDVPVIAGG-VNDYTTALHLMRTGAAGVIVGPGG 219 (369)
T ss_pred cCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHH-CCCCEEEeC-CCCHHHHHHHHHcCCCEEEECCCC
Confidence 478899999999999999985 2 33332 3578999988876 799999966 78888888888899999983310
Q ss_pred ------CCC--HHHHHHHHHH-------HHHcC---CcEEEE--eCCHHHHHHHhcccCCcEEEeecc
Q 015424 271 ------VLP--DLDIRYMTKI-------CKLLG---LTALVE--VHDEREMDRVLGIEGIELIGINNR 318 (407)
Q Consensus 271 ------iL~--~~~L~~Li~~-------a~~LG---L~aLVE--Vht~eElerAl~l~Ga~iIGINnR 318 (407)
.+. ..+...+.+. ..+.| +.++.+ +++..++.+|+.+ ||+-+.+-.+
T Consensus 220 ~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAl-GAdaV~iGt~ 286 (369)
T TIGR01304 220 ANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIAC-GADAVVLGSP 286 (369)
T ss_pred CcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHc-CCCEeeeHHH
Confidence 110 1122222222 22344 777776 6899999999998 9999998554
No 231
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.04 E-value=0.0056 Score=61.11 Aligned_cols=86 Identities=19% Similarity=0.268 Sum_probs=65.5
Q ss_pred HHHHHHHHHHc---CCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhccccccccc
Q 015424 277 IRYMTKICKLL---GLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQ 353 (407)
Q Consensus 277 L~~Li~~a~~L---GL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~ 353 (407)
+.+-++.+++. ....-|||.|.+|+..|+++ |+++|-..|-+. +...+.++.+ +
T Consensus 179 i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~-gaDiImLDn~s~----------------e~l~~av~~~------~ 235 (281)
T PRK06543 179 LTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAA-GVDTIMLDNFSL----------------DDLREGVELV------D 235 (281)
T ss_pred HHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhc-CCCEEEECCCCH----------------HHHHHHHHHh------C
Confidence 44455555543 36788999999999999997 999999966544 3344444432 2
Q ss_pred CCceEEEeeCCCCHHHHHHHHHcCCCEEEEccc
Q 015424 354 KNIIVVGESGLFTPDDIAYVQEAGVKAVLVGES 386 (407)
Q Consensus 354 ~~v~vVAESGI~t~eD~~~l~~~GadaVLVGea 386 (407)
....+-+.||| |++.+......|+|.+.+|.-
T Consensus 236 ~~~~leaSGgI-~~~ni~~yA~tGVD~Is~gal 267 (281)
T PRK06543 236 GRAIVEASGNV-NLNTVGAIASTGVDVISVGAL 267 (281)
T ss_pred CCeEEEEECCC-CHHHHHHHHhcCCCEEEeCcc
Confidence 34578899999 999999999999999999963
No 232
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.03 E-value=0.0064 Score=61.05 Aligned_cols=89 Identities=15% Similarity=0.201 Sum_probs=67.0
Q ss_pred HHHHHHHHHcC--CcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCC
Q 015424 278 RYMTKICKLLG--LTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKN 355 (407)
Q Consensus 278 ~~Li~~a~~LG--L~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~ 355 (407)
.+.++.++++. ...-|||.|.+|++.|+++ |+|+|-..|-+. +...+.++.+ +..
T Consensus 193 ~~av~~~r~~~~~~kIeVEvetleea~eA~~a-GaDiImLDnmsp----------------e~l~~av~~~------~~~ 249 (294)
T PRK06978 193 GAALDAAFALNAGVPVQIEVETLAQLETALAH-GAQSVLLDNFTL----------------DMMREAVRVT------AGR 249 (294)
T ss_pred HHHHHHHHHhCCCCcEEEEcCCHHHHHHHHHc-CCCEEEECCCCH----------------HHHHHHHHhh------cCC
Confidence 44556666542 5678999999999999997 999999966544 3344444432 235
Q ss_pred ceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015424 356 IIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 390 (407)
Q Consensus 356 v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~ 390 (407)
+.+-+.||| |++.+......|+|.+.+|.-....
T Consensus 250 ~~lEaSGGI-t~~ni~~yA~tGVD~IS~galthsa 283 (294)
T PRK06978 250 AVLEVSGGV-NFDTVRAFAETGVDRISIGALTKDV 283 (294)
T ss_pred eEEEEECCC-CHHHHHHHHhcCCCEEEeCccccCC
Confidence 688899999 9999999999999999999754443
No 233
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.02 E-value=0.0052 Score=61.59 Aligned_cols=88 Identities=11% Similarity=0.127 Sum_probs=67.0
Q ss_pred HHHHHHHHHHc---CCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhccccccccc
Q 015424 277 IRYMTKICKLL---GLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQ 353 (407)
Q Consensus 277 L~~Li~~a~~L---GL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~ 353 (407)
+.+-++.+++. ...+-|||.|.+|++.|+++ |+|+|-..|-+. +...+.++.+ +
T Consensus 183 i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~a-gaDiImLDnmsp----------------e~l~~av~~~------~ 239 (290)
T PRK06559 183 VQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAA-GADIIMLDNMSL----------------EQIEQAITLI------A 239 (290)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHc-CCCEEEECCCCH----------------HHHHHHHHHh------c
Confidence 33444555543 46789999999999999997 999999965544 3445555432 2
Q ss_pred CCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccC
Q 015424 354 KNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK 389 (407)
Q Consensus 354 ~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk 389 (407)
..+.+-+.||| |++.+......|+|.+.+|. ++.
T Consensus 240 ~~~~leaSGGI-~~~ni~~yA~tGVD~Is~ga-lth 273 (290)
T PRK06559 240 GRSRIECSGNI-DMTTISRFRGLAIDYVSSGS-LTH 273 (290)
T ss_pred CceEEEEECCC-CHHHHHHHHhcCCCEEEeCc-ccc
Confidence 35788999999 99999999999999999996 444
No 234
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=97.00 E-value=0.003 Score=61.33 Aligned_cols=76 Identities=18% Similarity=0.148 Sum_probs=62.2
Q ss_pred CCCHHHHHHHHHHcCCcEEEEEecCCcCCC---CHHHHHHHHhcCC-CCcEEeccccCCHHHHHHHHHcCCCEEEEeccC
Q 015424 196 DFDPVEIARSYEKGGAACLSILTDEKYFKG---SFENLEAVRSAGV-KCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV 271 (407)
Q Consensus 196 ~~dp~~iA~ay~~~GA~aISVLTd~~~F~G---s~edL~~Vr~a~v-~lPVL~KDFIid~~QI~eAr~~GADaVLLiaai 271 (407)
+.+..++|+..+++||++|+| |..+-++ .++.++.++++ + ++||+.-.-|.+..++.+...+|||+|.+.-.+
T Consensus 147 ~~~~~~~a~~l~~aGad~i~V--d~~~~g~~~a~~~~I~~i~~~-~~~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~ 223 (231)
T TIGR00736 147 PLDELIDALNLVDDGFDGIHV--DAMYPGKPYADMDLLKILSEE-FNDKIIIGNNSIDDIESAKEMLKAGADFVSVARAI 223 (231)
T ss_pred cchHHHHHHHHHHcCCCEEEE--eeCCCCCchhhHHHHHHHHHh-cCCCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhh
Confidence 347889999999999999999 3333333 37778888886 7 499999999999999999999999999997777
Q ss_pred CCH
Q 015424 272 LPD 274 (407)
Q Consensus 272 L~~ 274 (407)
|.+
T Consensus 224 l~~ 226 (231)
T TIGR00736 224 LKG 226 (231)
T ss_pred ccC
Confidence 654
No 235
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=97.00 E-value=0.0058 Score=58.74 Aligned_cols=187 Identities=13% Similarity=0.100 Sum_probs=109.9
Q ss_pred HHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEe--ccccCCHHHHHHHHHcCCCEEEEeccCCCHHH
Q 015424 199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLC--KEFIVDAWQIYYARTKGADAVLLIAAVLPDLD 276 (407)
Q Consensus 199 p~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~--KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~ 276 (407)
..++++.... ....+-|=| +-|+.+.++-++.+++...+.+|+. |=+=++.+-...+..+|||.+..++.. +.+.
T Consensus 18 A~~l~~~l~~-~v~~iKVG~-~L~~~~G~~~i~~lk~~~~~~~IflDlKl~DIp~tv~~~~~~~Gad~~tv~~~~-g~~~ 94 (218)
T PRK13305 18 AQRDVTLLKD-HVDIVEAGT-ILCLNEGLGAVKALREQCPDKIIVADWKVADAGETLAQQAFGAGANWMTIICAA-PLAT 94 (218)
T ss_pred HHHHHHHccc-cCCEEEECH-HHHHHhCHHHHHHHHHhCCCCEEEEEeecccChHHHHHHHHHcCCCEEEEecCC-CHHH
Confidence 4445554432 344555543 3456666888888887422566763 322244444445678999999998873 6677
Q ss_pred HHHHHHHHHHcCCc---EEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhccccccccc
Q 015424 277 IRYMTKICKLLGLT---ALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQ 353 (407)
Q Consensus 277 L~~Li~~a~~LGL~---aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~ 353 (407)
++...+.+.+.|-. -|+.|.|..+.....++ |.+.+....-.++.. ............+.+. .+
T Consensus 95 i~~a~~~a~~~~~~~~~~llgV~t~~~~~~l~~~-g~~~~v~h~a~~a~~------~G~v~s~~e~~~ir~~------~~ 161 (218)
T PRK13305 95 VEKGHAVAQRCGGEIQIELFGNWTLDDARDWHRI-GVRQAIYHRGRDAQA------SGQQWGEADLARMKAL------SD 161 (218)
T ss_pred HHHHHHHHHhcCCcccceEEEecCcchHHHHHHc-CCHHHHHHHHHHHHH------hCCCCCHHHHHHHHHH------hC
Confidence 88888766665533 47777544443333344 543222211111000 0011111222223222 12
Q ss_pred CCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 354 KNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 354 ~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
.+..+..-+|| .++.....-+.++|-++||.+|++++||.++.+++..
T Consensus 162 ~~~~i~VtpGI-r~~~~~~~dq~rvd~iVVGR~It~A~dP~~aa~~i~~ 209 (218)
T PRK13305 162 IGLELSITGGI-TPADLPLFKDIRVKAFIAGRALAGAANPAQVAADFHA 209 (218)
T ss_pred CCCcEEEeCCc-CccccccccccCCCEEEECCcccCCCCHHHHHHHHHH
Confidence 35546667999 6777777888899999999999999999999988764
No 236
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=97.00 E-value=0.0039 Score=64.68 Aligned_cols=171 Identities=19% Similarity=0.226 Sum_probs=101.0
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEec----cccCCH-HHHHHH-H------------H
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCK----EFIVDA-WQIYYA-R------------T 259 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~K----DFIid~-~QI~eA-r------------~ 259 (407)
...++.+..+++|+.+|-+-.|-..++-...|++ .. . +|.... .+.-+| |...-. . .
T Consensus 152 ~~~~ll~RA~~aG~~alvlTVD~pv~g~Rerd~r---~~-~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (383)
T cd03332 152 LTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLD---LG-Y-LPFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEA 226 (383)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCCCchhhhh---cC-C-CCCccccchhhhhccchhhhccccCCCCCcccccccch
Confidence 3455667778899999999889888877765554 32 2 232110 111011 000000 0 0
Q ss_pred cCCCEE-EEeccCCCHHHHHHHHHHHHHcCCcEEE-EeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCch
Q 015424 260 KGADAV-LLIAAVLPDLDIRYMTKICKLLGLTALV-EVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNS 337 (407)
Q Consensus 260 ~GADaV-LLiaaiL~~~~L~~Li~~a~~LGL~aLV-EVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~ 337 (407)
.++... ..+...++-++++.+.+ ..++.+++ +|-+.+++.++.++ |++.|-|.|..- ......+.
T Consensus 227 ~~~~~~~~~~~~~~tW~~i~~lr~---~~~~pvivKgV~~~~dA~~a~~~-G~d~I~vsnhGG---------r~~d~~~~ 293 (383)
T cd03332 227 AVARFVSVFSGPSLTWEDLAFLRE---WTDLPIVLKGILHPDDARRAVEA-GVDGVVVSNHGG---------RQVDGSIA 293 (383)
T ss_pred hHHHHHHhcCCCCCCHHHHHHHHH---hcCCCEEEecCCCHHHHHHHHHC-CCCEEEEcCCCC---------cCCCCCcC
Confidence 000000 00112344455544443 45666655 49999999999997 999888876532 22222233
Q ss_pred hHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccC
Q 015424 338 NTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK 389 (407)
Q Consensus 338 ~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk 389 (407)
+...|.+ +... + ..++.+++.|||.+..|+.+...+||++|.||..++.
T Consensus 294 t~~~L~e-i~~~-~-~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l~ 342 (383)
T cd03332 294 ALDALPE-IVEA-V-GDRLTVLFDSGVRTGADIMKALALGAKAVLIGRPYAY 342 (383)
T ss_pred HHHHHHH-HHHH-h-cCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence 3333322 1110 1 2458999999999999999999999999999999984
No 237
>TIGR03586 PseI pseudaminic acid synthase.
Probab=96.98 E-value=0.0095 Score=60.60 Aligned_cols=94 Identities=20% Similarity=0.213 Sum_probs=73.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhccccccc
Q 015424 272 LPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEII 351 (407)
Q Consensus 272 L~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i 351 (407)
|+.+++.+|.++|+++||+.+.++.|.+.++.+.++ |++++=|-.+|+ . |+.....+.+
T Consensus 74 l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~-~v~~~KI~S~~~---------~----n~~LL~~va~------- 132 (327)
T TIGR03586 74 TPWEWHKELFERAKELGLTIFSSPFDETAVDFLESL-DVPAYKIASFEI---------T----DLPLIRYVAK------- 132 (327)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEccCCHHHHHHHHHc-CCCEEEECCccc---------c----CHHHHHHHHh-------
Confidence 566778899999999999999999999999999998 999999998888 3 3444444443
Q ss_pred ccCCceEEEeeCCCCHHHHHHH----HHcCCCEEEE--ccccc
Q 015424 352 RQKNIIVVGESGLFTPDDIAYV----QEAGVKAVLV--GESIV 388 (407)
Q Consensus 352 ~~~~v~vVAESGI~t~eD~~~l----~~~GadaVLV--GeaLm 388 (407)
.+.+||..-|..|.+++... .+.|..-|.+ +.+-+
T Consensus 133 --~gkPvilstG~~t~~Ei~~Av~~i~~~g~~~i~LlhC~s~Y 173 (327)
T TIGR03586 133 --TGKPIIMSTGIATLEEIQEAVEACREAGCKDLVLLKCTSSY 173 (327)
T ss_pred --cCCcEEEECCCCCHHHHHHHHHHHHHCCCCcEEEEecCCCC
Confidence 35678888888999998654 4568866666 55544
No 238
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=96.96 E-value=0.012 Score=62.21 Aligned_cols=104 Identities=14% Similarity=0.088 Sum_probs=66.8
Q ss_pred HHHHHHHcCCcEEEEeCCHHHHHHHhcccC-CcEEEeeccccccccccccccccccCchhHHHHhhcccc--ccc-----
Q 015424 280 MTKICKLLGLTALVEVHDEREMDRVLGIEG-IELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERG--EII----- 351 (407)
Q Consensus 280 Li~~a~~LGL~aLVEVht~eElerAl~l~G-a~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~--~~i----- 351 (407)
+++..+..|.. |.+|++.+.+. | ++.|-+. .+- |.+ + ..+ .+..|++.+.. +.+
T Consensus 159 ~v~~L~~~G~i------t~eEA~~a~~~-g~aD~Ivve-~EA---GGH-t-g~~-----~~~~Llp~i~~lrd~v~~~~~ 220 (444)
T TIGR02814 159 ILQKLLAEGRI------TREEAELARRV-PVADDICVE-ADS---GGH-T-DNR-----PLVVLLPAIIRLRDTLMRRYG 220 (444)
T ss_pred HHHHHHHcCCC------CHHHHHHHHhC-CCCcEEEEe-ccC---CCC-C-CCC-----cHHHHHHHHHHHHHHHhhccc
Confidence 44555566664 88999999887 6 5888775 443 332 2 111 11233322210 001
Q ss_pred ccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCC--hHHHHHhhh
Q 015424 352 RQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD--PGKGITGLF 401 (407)
Q Consensus 352 ~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~d--p~~~i~~L~ 401 (407)
-+..++||+.|||.|++++..+..+||++|++|+.+.-+.. .-...++++
T Consensus 221 y~~~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~flat~Esgas~~~K~~L 272 (444)
T TIGR02814 221 YRKPIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQCTVEAGTSDNVKKLL 272 (444)
T ss_pred CCCCceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHHhCccccCCHHHHHHH
Confidence 01257899999999999999999999999999999987554 224455544
No 239
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=96.96 E-value=0.027 Score=57.62 Aligned_cols=93 Identities=17% Similarity=0.274 Sum_probs=69.8
Q ss_pred CCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEecc---C----CCH-HHHHHHHHHHHHc--CCcEEEE
Q 015424 225 GSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA---V----LPD-LDIRYMTKICKLL--GLTALVE 294 (407)
Q Consensus 225 Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa---i----L~~-~~L~~Li~~a~~L--GL~aLVE 294 (407)
.+.++|+.+|+. .++||+.|+. .++..+..+..+|||+|.+.-. . .+. .-|.++.+..+.. .+.+++.
T Consensus 200 ~~~~~i~~l~~~-~~~PvivKgv-~~~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~ 277 (344)
T cd02922 200 LTWDDIKWLRKH-TKLPIVLKGV-QTVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVD 277 (344)
T ss_pred CCHHHHHHHHHh-cCCcEEEEcC-CCHHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 678999999986 8999999965 6788888899999999998643 1 121 2244444433344 2666665
Q ss_pred --eCCHHHHHHHhcccCCcEEEeecccc
Q 015424 295 --VHDEREMDRVLGIEGIELIGINNRNL 320 (407)
Q Consensus 295 --Vht~eElerAl~l~Ga~iIGINnRdL 320 (407)
|.+-.++-+++.+ ||+.++|-..-|
T Consensus 278 GGIr~G~Dv~kalaL-GA~aV~iG~~~l 304 (344)
T cd02922 278 GGVRRGTDVLKALCL-GAKAVGLGRPFL 304 (344)
T ss_pred CCCCCHHHHHHHHHc-CCCEEEECHHHH
Confidence 6799999999999 999999976655
No 240
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=96.95 E-value=0.0043 Score=64.98 Aligned_cols=111 Identities=14% Similarity=0.071 Sum_probs=69.9
Q ss_pred HHHHHHHHcCCcEEEEeCCHHHHHHHhcccC-CcEEEeeccccccccccccccccccCchhHHHHhhcccc-cccccCCc
Q 015424 279 YMTKICKLLGLTALVEVHDEREMDRVLGIEG-IELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERG-EIIRQKNI 356 (407)
Q Consensus 279 ~Li~~a~~LGL~aLVEVht~eElerAl~l~G-a~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~-~~i~~~~v 356 (407)
++++..++.|+. |.+|++.+.++ | ++.|-+. .+- |.+.-......=+....++...+.. ..+ ...+
T Consensus 153 ~~v~~L~~~G~i------t~~eA~~A~~~-g~aD~Ivvq-~EA---GGH~g~~~~~~Llp~v~~l~d~v~~~~~~-~~~i 220 (418)
T cd04742 153 RILKKLLAEGKI------TEEQAELARRV-PVADDITVE-ADS---GGHTDNRPLSVLLPTIIRLRDELAARYGY-RRPI 220 (418)
T ss_pred HHHHHHHHcCCC------CHHHHHHHHhC-CCCCEEEEc-ccC---CCCCCCccHHhHHHHHHHHHHHHhhcccc-CCCc
Confidence 355666777875 99999999998 7 6999887 554 2221111000111111111111100 001 1258
Q ss_pred eEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCC--hHHHHHhhh
Q 015424 357 IVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD--PGKGITGLF 401 (407)
Q Consensus 357 ~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~d--p~~~i~~L~ 401 (407)
+||+.|||.|++++..+..+||++|.+|+.+..+.. .-...|+++
T Consensus 221 pViAAGGI~tg~~vaAA~alGAd~V~~GT~flat~Ea~~s~~~K~~L 267 (418)
T cd04742 221 RVGAAGGIGTPEAAAAAFALGADFIVTGSINQCTVEAGTSDAVKDLL 267 (418)
T ss_pred eEEEECCCCCHHHHHHHHHcCCcEEeeccHHHhCccccCCHHHHHHH
Confidence 999999999999999999999999999999987554 224455544
No 241
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.94 E-value=0.0071 Score=60.36 Aligned_cols=86 Identities=16% Similarity=0.225 Sum_probs=64.1
Q ss_pred HHHHHHHHHc---CCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccC
Q 015424 278 RYMTKICKLL---GLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQK 354 (407)
Q Consensus 278 ~~Li~~a~~L---GL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~ 354 (407)
.+-++.+++. ....-|||.|.+|++.|+++ |+++|-..|-+. +...+.++.+ +.
T Consensus 181 ~~ai~~~r~~~~~~~kIeVEv~tleea~ea~~~-gaDiI~LDn~s~----------------e~l~~av~~~------~~ 237 (281)
T PRK06106 181 REAIRRARAGVGHLVKIEVEVDTLDQLEEALEL-GVDAVLLDNMTP----------------DTLREAVAIV------AG 237 (281)
T ss_pred HHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHHc-CCCEEEeCCCCH----------------HHHHHHHHHh------CC
Confidence 3344445543 35688999999999999997 999999966544 3344444432 23
Q ss_pred CceEEEeeCCCCHHHHHHHHHcCCCEEEEcccc
Q 015424 355 NIIVVGESGLFTPDDIAYVQEAGVKAVLVGESI 387 (407)
Q Consensus 355 ~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaL 387 (407)
..++-+.||| |++.+..+...|+|.+.+|.-.
T Consensus 238 ~~~leaSGGI-~~~ni~~yA~tGVD~Is~Galt 269 (281)
T PRK06106 238 RAITEASGRI-TPETAPAIAASGVDLISVGWLT 269 (281)
T ss_pred CceEEEECCC-CHHHHHHHHhcCCCEEEeChhh
Confidence 4568889999 9999999999999999999743
No 242
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=96.93 E-value=0.025 Score=54.97 Aligned_cols=159 Identities=21% Similarity=0.257 Sum_probs=105.9
Q ss_pred HHHHHHHcCCcEEEEEecCCcCCC---CHHHHHHHHhcCCCCcEE------eccccCCHH-------HHHHHHHcCCCEE
Q 015424 202 IARSYEKGGAACLSILTDEKYFKG---SFENLEAVRSAGVKCPLL------CKEFIVDAW-------QIYYARTKGADAV 265 (407)
Q Consensus 202 iA~ay~~~GA~aISVLTd~~~F~G---s~edL~~Vr~a~v~lPVL------~KDFIid~~-------QI~eAr~~GADaV 265 (407)
-+...+++||..|=.+ +.-.-+| |+--++.+++. .++||. ..||+.+.. .|..++.+|+++|
T Consensus 13 ~l~~A~~~GAdRiELC-~~La~GG~TPSyG~~k~a~~~-~~ipv~~MIRPRgGdFvY~~~E~~iM~~DI~~~~~lG~~GV 90 (241)
T COG3142 13 GLLAAQAAGADRIELC-DALAEGGLTPSYGVIKEAVEL-SKIPVYVMIRPRGGDFVYSDDELEIMLEDIRLARELGVQGV 90 (241)
T ss_pred hHHHHHHcCCceeehh-hccccCCCCCCHHHHHHHHhh-cCCceEEEEecCCCCcccChHHHHHHHHHHHHHHHcCCCcE
Confidence 4567788899888754 3333444 88899999885 688876 368987764 5778999999999
Q ss_pred EEecc----CCCHHHHHHHHHHHHHcCCcE---EEEeCCHHHH-HHHhcccCCcEEEeeccccccccccccccccccCch
Q 015424 266 LLIAA----VLPDLDIRYMTKICKLLGLTA---LVEVHDEREM-DRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNS 337 (407)
Q Consensus 266 LLiaa----iL~~~~L~~Li~~a~~LGL~a---LVEVht~eEl-erAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~ 337 (407)
.+++- -++.+.++.|++.+..|+++. +=++.|..+. +...++ |+ +|-| |..+- .+-.-.+.
T Consensus 91 V~G~lt~dg~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~-Gv------~RIL--TsGg~--~sa~eg~~ 159 (241)
T COG3142 91 VLGALTADGNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIEL-GV------ERIL--TSGGK--ASALEGLD 159 (241)
T ss_pred EEeeecCCCccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHC-CC------cEEe--cCCCc--CchhhhHH
Confidence 99875 345567888888877666654 4556666554 555565 55 3444 11111 22333455
Q ss_pred hHHHHhhcccccccccCCceEEEeeCCCCHHHHHHH-HHcCCCE
Q 015424 338 NTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYV-QEAGVKA 380 (407)
Q Consensus 338 ~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l-~~~Gada 380 (407)
+..+|+++. ...+.+...||| +++.++.+ ...|+.-
T Consensus 160 ~l~~li~~a------~gri~Im~GaGV-~~~N~~~l~~~tg~~e 196 (241)
T COG3142 160 LLKRLIEQA------KGRIIIMAGAGV-RAENIAELVLLTGVTE 196 (241)
T ss_pred HHHHHHHHh------cCCEEEEeCCCC-CHHHHHHHHHhcCchh
Confidence 666776652 235678888899 78888877 6667653
No 243
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.93 E-value=0.0073 Score=60.48 Aligned_cols=91 Identities=24% Similarity=0.294 Sum_probs=66.5
Q ss_pred HHHHHHHHH--cCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCC
Q 015424 278 RYMTKICKL--LGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKN 355 (407)
Q Consensus 278 ~~Li~~a~~--LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~ 355 (407)
..-++.+++ .....-|||.|.+|+..|++. |+++|-..|-+. +..++.++.++. . ...
T Consensus 187 ~~ai~~~r~~~~~~kIeVEv~tl~ea~eal~~-gaDiI~LDnm~~----------------e~vk~av~~~~~--~-~~~ 246 (289)
T PRK07896 187 VAALRAVRAAAPDLPCEVEVDSLEQLDEVLAE-GAELVLLDNFPV----------------WQTQEAVQRRDA--R-APT 246 (289)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHc-CCCEEEeCCCCH----------------HHHHHHHHHHhc--c-CCC
Confidence 334444444 246689999999999999997 999999954433 334444432211 1 246
Q ss_pred ceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccC
Q 015424 356 IIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK 389 (407)
Q Consensus 356 v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk 389 (407)
+.+.+.||| |++.+..+.+.|+|.+.+|.-...
T Consensus 247 v~ieaSGGI-~~~ni~~yA~tGvD~Is~galt~s 279 (289)
T PRK07896 247 VLLESSGGL-TLDTAAAYAETGVDYLAVGALTHS 279 (289)
T ss_pred EEEEEECCC-CHHHHHHHHhcCCCEEEeChhhcC
Confidence 788999999 999999999999999999975553
No 244
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=96.93 E-value=0.15 Score=51.04 Aligned_cols=139 Identities=12% Similarity=0.075 Sum_probs=102.5
Q ss_pred CCcE-EeccccCCHHHHHHHHHcCCCEEEEeccCCCHH----HHHHHHHHHHHcCCcEEEE-----------------eC
Q 015424 239 KCPL-LCKEFIVDAWQIYYARTKGADAVLLIAAVLPDL----DIRYMTKICKLLGLTALVE-----------------VH 296 (407)
Q Consensus 239 ~lPV-L~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~----~L~~Li~~a~~LGL~aLVE-----------------Vh 296 (407)
++|| |.-|-.-|...+.+|..+|-+.|.++++-|+-+ .-++.+++||..|+.+=.| -.
T Consensus 77 ~VPV~lHLDHg~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT 156 (285)
T PRK07709 77 TVPVAIHLDHGSSFEKCKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYA 156 (285)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCC
Confidence 4787 467777788899999999999999999999753 4567889999887766222 25
Q ss_pred CHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCC-CHHHHHHHHH
Q 015424 297 DEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLF-TPDDIAYVQE 375 (407)
Q Consensus 297 t~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~-t~eD~~~l~~ 375 (407)
|++|+.+..+..|+|.+.|.--+. =|.-+.....|++...++.+.+ ++++|.=||=. ..++++++.+
T Consensus 157 ~peeA~~Fv~~TgvD~LAvaiGt~----HG~Y~~~p~L~~~~L~~I~~~~--------~iPLVLHGgSG~~~e~~~~ai~ 224 (285)
T PRK07709 157 DPAECKHLVEATGIDCLAPALGSV----HGPYKGEPNLGFAEMEQVRDFT--------GVPLVLHGGTGIPTADIEKAIS 224 (285)
T ss_pred CHHHHHHHHHHhCCCEEEEeeccc----ccCcCCCCccCHHHHHHHHHHH--------CCCEEEeCCCCCCHHHHHHHHH
Confidence 788887777655999988864433 3333345678888888876541 45555544443 4588999999
Q ss_pred cCCCEEEEcccccC
Q 015424 376 AGVKAVLVGESIVK 389 (407)
Q Consensus 376 ~GadaVLVGeaLmk 389 (407)
+|+.-|=|++.+..
T Consensus 225 ~Gi~KiNi~T~l~~ 238 (285)
T PRK07709 225 LGTSKINVNTENQI 238 (285)
T ss_pred cCCeEEEeChHHHH
Confidence 99999999998754
No 245
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=96.93 E-value=0.09 Score=52.70 Aligned_cols=179 Identities=14% Similarity=0.154 Sum_probs=118.6
Q ss_pred HHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHH----HHHhcCCCCcEE-eccccCCHHHHHHHHHcCCCEEEEeccCCC
Q 015424 199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLE----AVRSAGVKCPLL-CKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (407)
Q Consensus 199 p~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~----~Vr~a~v~lPVL-~KDFIid~~QI~eAr~~GADaVLLiaaiL~ 273 (407)
...+.++.++.++..|-=.+...+-...++.+. .+.+. .++||- .-|-.-+...|.+|..+|-+.|.++.+-|+
T Consensus 31 ~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~-~~VPValHLDHg~~~e~i~~ai~~GFtSVM~DgS~lp 109 (286)
T PRK12738 31 IQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTT-YNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFP 109 (286)
T ss_pred HHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHH-CCCCEEEECCCCCCHHHHHHHHHcCCCeEeecCCCCC
Confidence 334445555555554443333222112233322 22232 478974 677777889999999999999999999997
Q ss_pred HH----HHHHHHHHHHHcCCcEEEE-------------------eCCHHHHHHHhcccCCcEEEeecccccccccccccc
Q 015424 274 DL----DIRYMTKICKLLGLTALVE-------------------VHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTE 330 (407)
Q Consensus 274 ~~----~L~~Li~~a~~LGL~aLVE-------------------Vht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~ 330 (407)
-+ .-++++++||.+|+.+=.| -.+.+|+.+..+..|+|.+.|.-=+. =|.-+.
T Consensus 110 ~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~----HG~Y~~ 185 (286)
T PRK12738 110 FAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTA----HGLYSK 185 (286)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcc----cCCCCC
Confidence 54 3567888999887766111 23677887777645999988863332 333334
Q ss_pred ccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccC
Q 015424 331 TFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK 389 (407)
Q Consensus 331 Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk 389 (407)
+..+|++...+|.+.+ .-..++=..||+. .++++++.++|+.-|=|++.|..
T Consensus 186 ~p~Ldfd~l~~I~~~~------~vPLVLHGgSG~~-~e~~~kai~~GI~KiNi~T~l~~ 237 (286)
T PRK12738 186 TPKIDFQRLAEIREVV------DVPLVLHGASDVP-DEFVRRTIELGVTKVNVATELKI 237 (286)
T ss_pred CCcCCHHHHHHHHHHh------CCCEEEeCCCCCC-HHHHHHHHHcCCeEEEeCcHHHH
Confidence 5778998888887652 1123444567884 88999999999999999998854
No 246
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=96.93 E-value=0.0072 Score=60.74 Aligned_cols=78 Identities=21% Similarity=0.342 Sum_probs=62.3
Q ss_pred CCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCH
Q 015424 288 GLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTP 367 (407)
Q Consensus 288 GL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~ 367 (407)
....-|||.|.+|++.|+++ |+++|-..|-+. +...++++.+ ...+.+-+.||| ++
T Consensus 208 ~~kIeVEv~sleea~ea~~~-gaDiI~LDn~s~----------------e~~~~av~~~------~~~~~ieaSGGI-~~ 263 (296)
T PRK09016 208 DVPVEVEVENLDELDQALKA-GADIIMLDNFTT----------------EQMREAVKRT------NGRALLEVSGNV-TL 263 (296)
T ss_pred CCCEEEEeCCHHHHHHHHHc-CCCEEEeCCCCh----------------HHHHHHHHhh------cCCeEEEEECCC-CH
Confidence 46789999999999999997 999999854332 4455665542 236788899999 99
Q ss_pred HHHHHHHHcCCCEEEEcccccCC
Q 015424 368 DDIAYVQEAGVKAVLVGESIVKQ 390 (407)
Q Consensus 368 eD~~~l~~~GadaVLVGeaLmk~ 390 (407)
+.+..+.+.|+|.+.+|. ++.+
T Consensus 264 ~ni~~yA~tGVD~Is~ga-lths 285 (296)
T PRK09016 264 ETLREFAETGVDFISVGA-LTKH 285 (296)
T ss_pred HHHHHHHhcCCCEEEeCc-cccC
Confidence 999999999999999996 4443
No 247
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=96.92 E-value=0.014 Score=58.54 Aligned_cols=144 Identities=19% Similarity=0.236 Sum_probs=90.1
Q ss_pred CCcEEeccccCCHHHHHHHH----HcCCCEEEEecc--------------CC-CHHHHHHHHHHHHH-cCCcEEEEeCC-
Q 015424 239 KCPLLCKEFIVDAWQIYYAR----TKGADAVLLIAA--------------VL-PDLDIRYMTKICKL-LGLTALVEVHD- 297 (407)
Q Consensus 239 ~lPVL~KDFIid~~QI~eAr----~~GADaVLLiaa--------------iL-~~~~L~~Li~~a~~-LGL~aLVEVht- 297 (407)
.-|+...=+.-+|.++.+|. ..|+|+|-|..- +| +++.+.++++..++ +++.+-|.+..
T Consensus 53 ~~p~~~Ql~g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g 132 (309)
T PF01207_consen 53 ERPLIVQLFGNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLG 132 (309)
T ss_dssp T-TEEEEEE-S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESE
T ss_pred ccceeEEEeeccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccc
Confidence 45777777777888776653 348888888744 44 45667778887764 56666555441
Q ss_pred -------HHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHH
Q 015424 298 -------EREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDI 370 (407)
Q Consensus 298 -------~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~ 370 (407)
..++-+.+.-.|++.|.|-.|.- -....-..|++...++.+. -.+++|+-|||+|++|+
T Consensus 133 ~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~------~q~~~~~a~w~~i~~i~~~--------~~ipvi~NGdI~s~~d~ 198 (309)
T PF01207_consen 133 WDDSPEETIEFARILEDAGVSAITVHGRTR------KQRYKGPADWEAIAEIKEA--------LPIPVIANGDIFSPEDA 198 (309)
T ss_dssp CT--CHHHHHHHHHHHHTT--EEEEECS-T------TCCCTS---HHHHHHCHHC---------TSEEEEESS--SHHHH
T ss_pred cccchhHHHHHHHHhhhcccceEEEecCch------hhcCCcccchHHHHHHhhc--------ccceeEEcCccCCHHHH
Confidence 23333333334999999988844 1112235888888887765 24899999999999999
Q ss_pred HHHHHc-CCCEEEEcccccCCCChHHH
Q 015424 371 AYVQEA-GVKAVLVGESIVKQDDPGKG 396 (407)
Q Consensus 371 ~~l~~~-GadaVLVGeaLmk~~dp~~~ 396 (407)
.++.+. |+|||.||.+++..|.....
T Consensus 199 ~~~~~~tg~dgvMigRgal~nP~lf~~ 225 (309)
T PF01207_consen 199 ERMLEQTGADGVMIGRGALGNPWLFRE 225 (309)
T ss_dssp HHHCCCH-SSEEEESHHHCC-CCHHCH
T ss_pred HHHHHhcCCcEEEEchhhhhcCHHhhh
Confidence 999887 99999999999999998764
No 248
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=96.91 E-value=0.011 Score=60.34 Aligned_cols=127 Identities=11% Similarity=0.043 Sum_probs=83.2
Q ss_pred HHHHHH--cCCCEEEEeccCCCHHHHHHHHHHHHHc--CCcEEEE-eCCHHHHHHHhcccCCcEEEeecccccccccccc
Q 015424 254 IYYART--KGADAVLLIAAVLPDLDIRYMTKICKLL--GLTALVE-VHDEREMDRVLGIEGIELIGINNRNLAISIFSYR 328 (407)
Q Consensus 254 I~eAr~--~GADaVLLiaaiL~~~~L~~Li~~a~~L--GL~aLVE-Vht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t 328 (407)
+.+..+ +|+|.|.++.+-=-.+..-++++..++. ++++++- |-|.+-++..+.+ |||.|=|. ++||..-|
T Consensus 113 ~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~a-GAD~vKVG----IGpGSiCt 187 (346)
T PRK05096 113 TKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILS-GADIVKVG----IGPGSVCT 187 (346)
T ss_pred HHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHc-CCCEEEEc----ccCCcccc
Confidence 444444 5999999998866555566677777763 5665543 6788888887886 99976431 23333332
Q ss_pred cccc-c---cCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015424 329 TETF-E---VDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 390 (407)
Q Consensus 329 ~~Tf-~---vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~ 390 (407)
+... . +-+....+.++.. ...++++||-|||+++-|+.+...+|||+|.+|+-|-..
T Consensus 188 Tr~vtGvG~PQltAV~~~a~~a-----~~~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAGt 248 (346)
T PRK05096 188 TRVKTGVGYPQLSAVIECADAA-----HGLGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGH 248 (346)
T ss_pred CccccccChhHHHHHHHHHHHH-----HHcCCCEEecCCcccccHHHHHHHcCCCEEEeChhhcCc
Confidence 2211 1 1122222222221 124789999999999999999999999999999888644
No 249
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=96.90 E-value=0.0065 Score=57.49 Aligned_cols=78 Identities=17% Similarity=0.179 Sum_probs=65.2
Q ss_pred CCCHHHHHHHHHHcCCcEEEEE---ecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCC
Q 015424 196 DFDPVEIARSYEKGGAACLSIL---TDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (407)
Q Consensus 196 ~~dp~~iA~ay~~~GA~aISVL---Td~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (407)
..++.++++.|.+.||+.|.+. -+...++-+++.+..+++. +++||+.-..|.+..++.++...|||+|++..+++
T Consensus 144 ~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~-~~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~ 222 (230)
T TIGR00007 144 EVSLEELAKRLEELGLEGIIYTDISRDGTLSGPNFELTKELVKA-VNVPVIASGGVSSIDDLIALKKLGVYGVIVGKALY 222 (230)
T ss_pred CCCHHHHHHHHHhCCCCEEEEEeecCCCCcCCCCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHH
Confidence 4799999999999999988876 3334444467888888886 89999999999999999999999999999987766
Q ss_pred CH
Q 015424 273 PD 274 (407)
Q Consensus 273 ~~ 274 (407)
..
T Consensus 223 ~~ 224 (230)
T TIGR00007 223 EG 224 (230)
T ss_pred cC
Confidence 43
No 250
>PRK14565 triosephosphate isomerase; Provisional
Probab=96.87 E-value=0.011 Score=57.69 Aligned_cols=132 Identities=18% Similarity=0.109 Sum_probs=82.7
Q ss_pred HHHcCCCEEEEeccCC------CHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcc------------c--CCcEEEee
Q 015424 257 ARTKGADAVLLIAAVL------PDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGI------------E--GIELIGIN 316 (407)
Q Consensus 257 Ar~~GADaVLLiaaiL------~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l------------~--Ga~iIGIN 316 (407)
.+++|++.++++++=. +++.+..=++.|.+.||.++++|-...|...+-.. . ...+|...
T Consensus 81 Lkd~G~~~viiGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGE~~e~r~~~~~~~~~~~Ql~~~l~~~~~ivIAYE 160 (237)
T PRK14565 81 LKECGCSYVILGHSERRSTFHETDSDIRLKAESAIESGLIPIICVGETLEDRENGMTKDVLLEQCSNCLPKHGEFIIAYE 160 (237)
T ss_pred HHHcCCCEEEECcccccCcCCcCHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHccChHHHHHHHHHHHhcCCCCEEEEEC
Confidence 4677999999999822 23333333367888999999999965443222111 0 12456665
Q ss_pred ccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHc-CCCEEEEcccccCCCChHH
Q 015424 317 NRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEA-GVKAVLVGESIVKQDDPGK 395 (407)
Q Consensus 317 nRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~-GadaVLVGeaLmk~~dp~~ 395 (407)
.-=.||+|. ..+.+...+....++. . ..++.++..|++ +++.+..+... |+||+|||.+-++.+++.+
T Consensus 161 PvWAIGtG~-------~a~~e~i~~~~~~Ir~--~-~~~~~IlYGGSV-~~~N~~~l~~~~~iDG~LvG~asl~~~~f~~ 229 (237)
T PRK14565 161 PVWAIGGST-------IPSNDAIAEAFEIIRS--Y-DSKSHIIYGGSV-NQENIRDLKSINQLSGVLVGSASLDVDSFCK 229 (237)
T ss_pred CHHHhCCCC-------CCCHHHHHHHHHHHHH--h-CCCceEEEcCcc-CHhhHHHHhcCCCCCEEEEechhhcHHHHHH
Confidence 555544333 1233333333333322 1 135788888999 67777766654 9999999999999888877
Q ss_pred HHHh
Q 015424 396 GITG 399 (407)
Q Consensus 396 ~i~~ 399 (407)
.++.
T Consensus 230 ii~~ 233 (237)
T PRK14565 230 IIQQ 233 (237)
T ss_pred HHHH
Confidence 6654
No 251
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.86 E-value=0.024 Score=58.60 Aligned_cols=120 Identities=13% Similarity=0.152 Sum_probs=87.9
Q ss_pred CCHHHHHHHHHHcCCcEEEEEe---cCCcCC--CCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEecc-
Q 015424 197 FDPVEIARSYEKGGAACLSILT---DEKYFK--GSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA- 270 (407)
Q Consensus 197 ~dp~~iA~ay~~~GA~aISVLT---d~~~F~--Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa- 270 (407)
.+..++++...+.|++.|.|-- |..|.+ |++.++..+.+. .++||+.++ +.+.....++..+|||+|.+...
T Consensus 141 ~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~-~~ipVIaG~-V~t~e~A~~l~~aGAD~V~VG~G~ 218 (368)
T PRK08649 141 QRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE-LDVPVIVGG-CVTYTTALHLMRTGAAGVLVGIGP 218 (368)
T ss_pred cCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHH-CCCCEEEeC-CCCHHHHHHHHHcCCCEEEECCCC
Confidence 4678999999999999999842 445544 358888888776 799999966 78888888888899999977511
Q ss_pred --------CC--CHHHHHHHHHHH---HHc-------CCcEEEE--eCCHHHHHHHhcccCCcEEEeeccc
Q 015424 271 --------VL--PDLDIRYMTKIC---KLL-------GLTALVE--VHDEREMDRVLGIEGIELIGINNRN 319 (407)
Q Consensus 271 --------iL--~~~~L~~Li~~a---~~L-------GL~aLVE--Vht~eElerAl~l~Ga~iIGINnRd 319 (407)
.+ .-.++..+.+.+ +++ ++.++.+ +++..++-+|+.+ ||+-+.+-.+=
T Consensus 219 Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlal-GAd~Vm~Gs~f 288 (368)
T PRK08649 219 GAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIAC-GADAVMLGSPL 288 (368)
T ss_pred CcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHc-CCCeecccchh
Confidence 11 122444444432 222 5778887 6799999999998 99998886553
No 252
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=96.86 E-value=0.016 Score=55.46 Aligned_cols=159 Identities=17% Similarity=0.230 Sum_probs=95.0
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhc--CCCCcEEe-ccc--cCCH-----HHHHHHHHcCCCEEEE
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSA--GVKCPLLC-KEF--IVDA-----WQIYYARTKGADAVLL 267 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a--~v~lPVL~-KDF--Iid~-----~QI~eAr~~GADaVLL 267 (407)
+..++++...+.|..++.| ++.++..+++. +.++.|-+ =+| .-.+ .++.+|...|||.|-+
T Consensus 19 ~i~~lc~~A~~~~~~avcv---------~p~~v~~a~~~l~~~~v~v~tVigFP~G~~~~~~K~~E~~~Av~~GAdEiDv 89 (211)
T TIGR00126 19 DIITLCAQAKTYKFAAVCV---------NPSYVPLAKELLKGTEVRICTVVGFPLGASTTDVKLYETKEAIKYGADEVDM 89 (211)
T ss_pred HHHHHHHHHHhhCCcEEEe---------CHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCEEEe
Confidence 4455566667778888888 48888888853 12333321 122 2222 3778889999999877
Q ss_pred eccCC---CH------HHHHHHHHHHHHcCCcEEEEeC--CHHHHHHHhcc---cCCcEEEeeccccccccccccccccc
Q 015424 268 IAAVL---PD------LDIRYMTKICKLLGLTALVEVH--DEREMDRVLGI---EGIELIGINNRNLAISIFSYRTETFE 333 (407)
Q Consensus 268 iaaiL---~~------~~L~~Li~~a~~LGL~aLVEVh--t~eElerAl~l---~Ga~iIGINnRdL~~~~~~~t~~Tf~ 333 (407)
..-+- +. +++..+.+.|+..-+.+++|.. +.+|+.++..+ .|+++|=.. |||+...
T Consensus 90 v~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTs------TGf~~~g---- 159 (211)
T TIGR00126 90 VINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTS------TGFGAGG---- 159 (211)
T ss_pred ecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeC------CCCCCCC----
Confidence 55432 32 1333333333322356788887 55666555433 388887662 2332222
Q ss_pred cCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEE
Q 015424 334 VDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAV 381 (407)
Q Consensus 334 vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaV 381 (407)
..++....+.+.+ +..+.+.+.|||+|.+|+..+.++|++.+
T Consensus 160 at~~dv~~m~~~v------~~~v~IKaaGGirt~~~a~~~i~aGa~ri 201 (211)
T TIGR00126 160 ATVEDVRLMRNTV------GDTIGVKASGGVRTAEDAIAMIEAGASRI 201 (211)
T ss_pred CCHHHHHHHHHHh------ccCCeEEEeCCCCCHHHHHHHHHHhhHHh
Confidence 2233333333321 23678999999999999999999998753
No 253
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.85 E-value=0.072 Score=52.48 Aligned_cols=172 Identities=16% Similarity=0.113 Sum_probs=117.7
Q ss_pred CCCHHHHHHHHHHcCCcEEEE-----EecCCcCCC----CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEE
Q 015424 196 DFDPVEIARSYEKGGAACLSI-----LTDEKYFKG----SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVL 266 (407)
Q Consensus 196 ~~dp~~iA~ay~~~GA~aISV-----LTd~~~F~G----s~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVL 266 (407)
..-..++|+...+.|+..+.= -|-+..|+| .+..|..+++. ..+|++. + +.|+.|+..+.. .+|.+-
T Consensus 28 ~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~-~Gl~~~T-e-v~d~~~v~~~~e-~vdilq 103 (250)
T PRK13397 28 YDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQE-FGLLSVS-E-IMSERQLEEAYD-YLDVIQ 103 (250)
T ss_pred HHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHH-cCCCEEE-e-eCCHHHHHHHHh-cCCEEE
Confidence 335677889999999877654 377788888 35566666665 7899998 3 478999999888 699999
Q ss_pred EeccCCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHHHHhcc---cCCcEEEeeccccccccccccccc-cccCchhH
Q 015424 267 LIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGI---EGIELIGINNRNLAISIFSYRTET-FEVDNSNT 339 (407)
Q Consensus 267 LiaaiL~~~~L~~Li~~a~~LGL~aLVEVh---t~eElerAl~l---~Ga~iIGINnRdL~~~~~~~t~~T-f~vDl~~t 339 (407)
+.+..+.+.+ |++.+.+.|..+++... +.+|+..|++. .|..-|.+-.|.. ++|++.+ +.+|+...
T Consensus 104 Igs~~~~n~~---LL~~va~tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~----~~Y~~~~~n~~dl~ai 176 (250)
T PRK13397 104 VGARNMQNFE---FLKTLSHIDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGV----RGYDVETRNMLDIMAV 176 (250)
T ss_pred ECcccccCHH---HHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEcccc----CCCCCccccccCHHHH
Confidence 8888877744 45566677999999877 88888777653 3555566666644 4444333 36888776
Q ss_pred HHHhhcccccccccCCceEEEe----eCCCC--HHHHHHHHHcCCCEEEEccc
Q 015424 340 KKLLEGERGEIIRQKNIIVVGE----SGLFT--PDDIAYVQEAGVKAVLVGES 386 (407)
Q Consensus 340 ~~L~~~~~~~~i~~~~v~vVAE----SGI~t--~eD~~~l~~~GadaVLVGea 386 (407)
..|.+. .+++||.- +|.+. +.-......+||||++|-.-
T Consensus 177 ~~lk~~--------~~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H 221 (250)
T PRK13397 177 PIIQQK--------TDLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVH 221 (250)
T ss_pred HHHHHH--------hCCCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEec
Confidence 666543 23455442 33322 24456667899999998743
No 254
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=96.84 E-value=0.035 Score=55.18 Aligned_cols=118 Identities=21% Similarity=0.318 Sum_probs=86.9
Q ss_pred HHHHHHHHHcCCcEEEEEecCCcCC--CCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEecc---CC--
Q 015424 200 VEIARSYEKGGAACLSILTDEKYFK--GSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA---VL-- 272 (407)
Q Consensus 200 ~~iA~ay~~~GA~aISVLTd~~~F~--Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa---iL-- 272 (407)
.++++...+.|+.+|-+..+....+ ...+.++.+|+. +++||+.|+ +.++.....+..+|||+|.+... .+
T Consensus 132 ~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~-~~~pvivK~-v~s~~~a~~a~~~G~d~I~v~~~gG~~~~~ 209 (299)
T cd02809 132 EDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQ-WKGPLILKG-ILTPEDALRAVDAGADGIVVSNHGGRQLDG 209 (299)
T ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHh-cCCCEEEee-cCCHHHHHHHHHCCCCEEEEcCCCCCCCCC
Confidence 3445555778999998876544211 235899999986 789999997 47777888899999999988542 22
Q ss_pred CHHHHHHHHHHHHHc--CCcEEEE--eCCHHHHHHHhcccCCcEEEeecccc
Q 015424 273 PDLDIRYMTKICKLL--GLTALVE--VHDEREMDRVLGIEGIELIGINNRNL 320 (407)
Q Consensus 273 ~~~~L~~Li~~a~~L--GL~aLVE--Vht~eElerAl~l~Ga~iIGINnRdL 320 (407)
....+..+.+..+.+ .+.++.. ++|..++.+++.+ ||+.|++-.+-|
T Consensus 210 g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~l-GAd~V~ig~~~l 260 (299)
T cd02809 210 APATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALAL-GADAVLIGRPFL 260 (299)
T ss_pred CcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHc-CCCEEEEcHHHH
Confidence 223555666666666 3776665 6799999999998 999999976655
No 255
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.82 E-value=0.081 Score=52.34 Aligned_cols=174 Identities=15% Similarity=0.113 Sum_probs=116.2
Q ss_pred CCHHHHHHHHHHcCCcEEEEEec-----CCcCCC----CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEE
Q 015424 197 FDPVEIARSYEKGGAACLSILTD-----EKYFKG----SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLL 267 (407)
Q Consensus 197 ~dp~~iA~ay~~~GA~aISVLTd-----~~~F~G----s~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLL 267 (407)
.-..++|+...+.|+..+.+-.+ +..|+| .+..|+.+++. ..+|++. + +.|+.++..+... +|.+-+
T Consensus 41 ~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~-~Gl~~~t-e-~~d~~~~~~l~~~-vd~~kI 116 (266)
T PRK13398 41 EQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDK-YNLPVVT-E-VMDTRDVEEVADY-ADMLQI 116 (266)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHH-cCCCEEE-e-eCChhhHHHHHHh-CCEEEE
Confidence 35678899999999999988744 677886 34455555554 6899987 3 3788889888888 998888
Q ss_pred eccCCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHHHHhcc---cCCcEEEeeccccccccccccccccccCchhHHH
Q 015424 268 IAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGI---EGIELIGINNRNLAISIFSYRTETFEVDNSNTKK 341 (407)
Q Consensus 268 iaaiL~~~~L~~Li~~a~~LGL~aLVEVh---t~eElerAl~l---~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~ 341 (407)
.+.-+.+.+ |++.+.++|+.+++.-. +.+|+..|.+. .|..-+.+-.|.. -+...|+ ...+|+.....
T Consensus 117 ga~~~~n~~---LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~-~t~~~Y~--~~~vdl~~i~~ 190 (266)
T PRK13398 117 GSRNMQNFE---LLKEVGKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGI-RTFETYT--RNTLDLAAVAV 190 (266)
T ss_pred CcccccCHH---HHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCC-CCCCCCC--HHHHHHHHHHH
Confidence 777777644 45556688999999987 78888777643 2444444444432 0112232 33467666555
Q ss_pred HhhcccccccccCCceEEE-eeCCCC-----HHHHHHHHHcCCCEEEEccccc
Q 015424 342 LLEGERGEIIRQKNIIVVG-ESGLFT-----PDDIAYVQEAGVKAVLVGESIV 388 (407)
Q Consensus 342 L~~~~~~~~i~~~~v~vVA-ESGI~t-----~eD~~~l~~~GadaVLVGeaLm 388 (407)
+.+. .+.+|+. .|--.. +..+.....+||+|++|-.-+.
T Consensus 191 lk~~--------~~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~ 235 (266)
T PRK13398 191 IKEL--------SHLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHPE 235 (266)
T ss_pred HHhc--------cCCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccCC
Confidence 4432 1345555 443334 6777888899999999986654
No 256
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=96.80 E-value=0.0062 Score=62.87 Aligned_cols=110 Identities=17% Similarity=0.185 Sum_probs=68.4
Q ss_pred CCCHHHHHHHHHHHHHcC--CcE---EEEeCCHHHHHH-HhcccCCcEEEeeccccccccccccccccccC--------c
Q 015424 271 VLPDLDIRYMTKICKLLG--LTA---LVEVHDEREMDR-VLGIEGIELIGINNRNLAISIFSYRTETFEVD--------N 336 (407)
Q Consensus 271 iL~~~~L~~Li~~a~~LG--L~a---LVEVht~eEler-Al~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vD--------l 336 (407)
+-+.++|..+++..++++ ..+ |+-.+..+++.. +.+. ++|+|-|...+= |+|.++.++.-+ +
T Consensus 184 i~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~a-g~D~ItIDG~~G---GTGAap~~~~d~~GlP~~~~l 259 (368)
T PF01645_consen 184 IYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAGAAKA-GADFITIDGAEG---GTGAAPLTSMDHVGLPTEYAL 259 (368)
T ss_dssp -SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHT-T-SEEEEE-TT------SSEECCHHHHC---HHHHH
T ss_pred cCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhhc-cCCEEEEeCCCC---CCCCCchhHHhhCCCcHHHHH
Confidence 447789999999998875 333 555677777766 6775 999999976654 555555444322 1
Q ss_pred hhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEccccc
Q 015424 337 SNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIV 388 (407)
Q Consensus 337 ~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLm 388 (407)
..+.+.+. ...+ .+.+.+++.|||.|+.|+.++..+|||+|-+|++.|
T Consensus 260 ~~a~~~L~---~~gl-r~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~~l 307 (368)
T PF01645_consen 260 ARAHQALV---KNGL-RDRVSLIASGGLRTGDDVAKALALGADAVYIGTAAL 307 (368)
T ss_dssp HHHHHHHH---CTT--CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHHHH
T ss_pred HHHHHHHH---HcCC-CCceEEEEeCCccCHHHHHHHHhcCCCeeEecchhh
Confidence 11122221 1122 246899999999999999999999999999999876
No 257
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=96.79 E-value=0.0062 Score=60.15 Aligned_cols=78 Identities=26% Similarity=0.203 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHcCCcEEEEEe-------c-----------CCcCCCC------HHHHHHHHhcCCCCcEEeccccCCHHH
Q 015424 198 DPVEIARSYEKGGAACLSILT-------D-----------EKYFKGS------FENLEAVRSAGVKCPLLCKEFIVDAWQ 253 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLT-------d-----------~~~F~Gs------~edL~~Vr~a~v~lPVL~KDFIid~~Q 253 (407)
+..++|+.++++|+++|.|.. | ...+.|. ++.+..+++. +++||+.-..|.++.+
T Consensus 170 ~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~-~~ipvi~~GGI~s~~d 248 (300)
T TIGR01037 170 DITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKM-VDIPIIGVGGITSFED 248 (300)
T ss_pred hHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhc-CCCCEEEECCCCCHHH
Confidence 678999999999999998741 0 1122232 3677788886 8999999999999999
Q ss_pred HHHHHHcCCCEEEEeccCCCHHH
Q 015424 254 IYYARTKGADAVLLIAAVLPDLD 276 (407)
Q Consensus 254 I~eAr~~GADaVLLiaaiL~~~~ 276 (407)
+.++..+|||+|.+...++.+.+
T Consensus 249 a~~~l~~GAd~V~igr~~l~~p~ 271 (300)
T TIGR01037 249 ALEFLMAGASAVQVGTAVYYRGF 271 (300)
T ss_pred HHHHHHcCCCceeecHHHhcCch
Confidence 99999999999999888884433
No 258
>PRK06256 biotin synthase; Validated
Probab=96.79 E-value=0.14 Score=51.29 Aligned_cols=199 Identities=15% Similarity=0.142 Sum_probs=108.7
Q ss_pred CCHHHH---HHHHHHcCCcEEEEEecCCcCCC-CHHH----HHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEe
Q 015424 197 FDPVEI---ARSYEKGGAACLSILTDEKYFKG-SFEN----LEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLI 268 (407)
Q Consensus 197 ~dp~~i---A~ay~~~GA~aISVLTd~~~F~G-s~ed----L~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLi 268 (407)
.++.++ ++.+.+.|+..+.+++......+ .+++ ++.+++. .++.+..--..+++.++...+.+|++.+.+.
T Consensus 91 ~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~-~~i~~~~~~g~l~~e~l~~LkeaG~~~v~~~ 169 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEE-TDLEICACLGLLTEEQAERLKEAGVDRYNHN 169 (336)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhc-CCCcEEecCCcCCHHHHHHHHHhCCCEEecC
Confidence 355554 55566778877777653321112 1223 3344443 4555555445588889988999999999874
Q ss_pred ccC-------C----CHHHHHHHHHHHHHcCCcE----EEEe-CCHHHH----HHHhcccCCcEEEeecccccccccccc
Q 015424 269 AAV-------L----PDLDIRYMTKICKLLGLTA----LVEV-HDEREM----DRVLGIEGIELIGINNRNLAISIFSYR 328 (407)
Q Consensus 269 aai-------L----~~~~L~~Li~~a~~LGL~a----LVEV-ht~eEl----erAl~l~Ga~iIGINnRdL~~~~~~~t 328 (407)
... + +-++..+.++.+++.|+.+ ++-. .|.++. ..+.++ +++.+.+|.-.. .++++..
T Consensus 170 lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l-~~~~v~i~~l~P-~pGT~l~ 247 (336)
T PRK06256 170 LETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGMGESLEDRVEHAFFLKEL-DADSIPINFLNP-IPGTPLE 247 (336)
T ss_pred CccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeCCCCHHHHHHHHHHHHhC-CCCEEeeccccc-CCCCCCC
Confidence 332 1 2244456667778888865 3321 234433 333445 778888874322 1222221
Q ss_pred ccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhh
Q 015424 329 TETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 401 (407)
Q Consensus 329 ~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~ 401 (407)
... .++.....+++...+ .+.|+..+.++.|--....|...+.=+||+++++|..|+....+...=.+++
T Consensus 248 ~~~-~~~~~e~l~~ia~~R--l~~p~~~I~~~~gr~~~~~~~~~~~~~g~~~~~~g~~lt~~g~~~~~d~~~~ 317 (336)
T PRK06256 248 NHP-ELTPLECLKTIAIFR--LINPDKEIRIAGGREVNLRSLQPLGLGGANSVIVGNYLTTVGQPATADLDMI 317 (336)
T ss_pred CCC-CCCHHHHHHHHHHHH--HHCCCCeeEecCchhhhchhhHHHHhccCceeeECCcccCCCCChHHHHHHH
Confidence 111 133344443333222 1224333445544323444454433379999999999998887765544454
No 259
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=96.78 E-value=0.0077 Score=56.84 Aligned_cols=79 Identities=16% Similarity=0.236 Sum_probs=65.1
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEEec--CCcCCC-CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccC
Q 015424 195 EDFDPVEIARSYEKGGAACLSILTD--EKYFKG-SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV 271 (407)
Q Consensus 195 ~~~dp~~iA~ay~~~GA~aISVLTd--~~~F~G-s~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaai 271 (407)
...++.++++.|.+.||+.|.+..- ...+.| +++.++.+++. +++||+.-..|.++.++.++...|||+|++..++
T Consensus 144 ~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~-~~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~ 222 (234)
T cd04732 144 SEVSLEELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAA-TGIPVIASGGVSSLDDIKALKELGVAGVIVGKAL 222 (234)
T ss_pred cCCCHHHHHHHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHh-cCCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHH
Confidence 3568999999999999999988632 223333 56778888876 7999999999999999999999999999998887
Q ss_pred CCH
Q 015424 272 LPD 274 (407)
Q Consensus 272 L~~ 274 (407)
+..
T Consensus 223 ~~~ 225 (234)
T cd04732 223 YEG 225 (234)
T ss_pred HcC
Confidence 754
No 260
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.78 E-value=0.027 Score=56.95 Aligned_cols=115 Identities=15% Similarity=0.222 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCCC----HHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEec----
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKGS----FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA---- 269 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~Gs----~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLia---- 269 (407)
+..+.+....++|+..|.|.+ .+|+ .+.++.+|+...++||++ ..+.+..+...+..+|||+|.+..
T Consensus 94 ~~~~~~~~l~eagv~~I~vd~----~~G~~~~~~~~i~~ik~~~p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg~g~G~ 168 (325)
T cd00381 94 DDKERAEALVEAGVDVIVIDS----AHGHSVYVIEMIKFIKKKYPNVDVIA-GNVVTAEAARDLIDAGADGVKVGIGPGS 168 (325)
T ss_pred hHHHHHHHHHhcCCCEEEEEC----CCCCcHHHHHHHHHHHHHCCCceEEE-CCCCCHHHHHHHHhcCCCEEEECCCCCc
Confidence 456788888889999988754 1232 456777777522488888 556888999999999999998621
Q ss_pred ----cCC-----CH-HHHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhcccCCcEEEeecc
Q 015424 270 ----AVL-----PD-LDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGINNR 318 (407)
Q Consensus 270 ----aiL-----~~-~~L~~Li~~a~~LGL~aLV--EVht~eElerAl~l~Ga~iIGINnR 318 (407)
... +. ..+.++.+.++..++.++. -+.+..++.+++.+ ||+.+.+-.+
T Consensus 169 ~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~-GA~~VmiGt~ 228 (325)
T cd00381 169 ICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAA-GADAVMLGSL 228 (325)
T ss_pred CcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHc-CCCEEEecch
Confidence 110 11 1234555666667899998 78999999999998 9999998554
No 261
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=96.77 E-value=0.075 Score=54.36 Aligned_cols=188 Identities=19% Similarity=0.188 Sum_probs=123.9
Q ss_pred CCceEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEE-----EecCCcCCC----CHHHHHHHHhcCCCCcEEec
Q 015424 175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSI-----LTDEKYFKG----SFENLEAVRSAGVKCPLLCK 245 (407)
Q Consensus 175 ~~~~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISV-----LTd~~~F~G----s~edL~~Vr~a~v~lPVL~K 245 (407)
+++.+||. | ..+....-..++|+...+.||..+.. -|-|..|+| .+..|..+++. ..+|++.-
T Consensus 92 ~~~~~IAG-----P--CsiEs~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf~G~g~~gL~~L~~~~~~-~Gl~v~te 163 (335)
T PRK08673 92 GKPVVIAG-----P--CSVESEEQILEIARAVKEAGAQILRGGAFKPRTSPYSFQGLGEEGLKLLAEAREE-TGLPIVTE 163 (335)
T ss_pred CceEEEEe-----c--CccCCHHHHHHHHHHHHHhchhhccCcEecCCCCCcccccccHHHHHHHHHHHHH-cCCcEEEe
Confidence 45667777 3 23444445678899999999986654 255667888 45667776765 78999973
Q ss_pred cccCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHHHHhcc---cCCcEEEeeccc
Q 015424 246 EFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGI---EGIELIGINNRN 319 (407)
Q Consensus 246 DFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVh---t~eElerAl~l---~Ga~iIGINnRd 319 (407)
+.|+.++..+..+ +|.+-+.+.-+.+.+ |++.+-+.|..+++.-. |.+|+..|.+. .|..-+-+-.|.
T Consensus 164 --v~d~~~~~~l~~~-vd~lqIgAr~~~N~~---LL~~va~~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG 237 (335)
T PRK08673 164 --VMDPRDVELVAEY-VDILQIGARNMQNFD---LLKEVGKTNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERG 237 (335)
T ss_pred --eCCHHHHHHHHHh-CCeEEECcccccCHH---HHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 4789999998888 998888888777744 45666678999998876 78888777642 355545555552
Q ss_pred cccccccc-cccccccCchhHHHHhhcccccccccCCceEEE-eeCCCC-----HHHHHHHHHcCCCEEEEccccc
Q 015424 320 LAISIFSY-RTETFEVDNSNTKKLLEGERGEIIRQKNIIVVG-ESGLFT-----PDDIAYVQEAGVKAVLVGESIV 388 (407)
Q Consensus 320 L~~~~~~~-t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVA-ESGI~t-----~eD~~~l~~~GadaVLVGeaLm 388 (407)
. ..| +.....+|+.....+.+. .+.+||. .|--.. +.-......+||||++|-.-..
T Consensus 238 ~----~tf~~~~~~~ldl~ai~~lk~~--------~~lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~~ 301 (335)
T PRK08673 238 I----RTFETATRNTLDLSAVPVIKKL--------THLPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPD 301 (335)
T ss_pred C----CCCCCcChhhhhHHHHHHHHHh--------cCCCEEEeCCCCCccccchHHHHHHHHHhCCCEEEEEecCC
Confidence 2 122 113345777776655543 1344533 222222 3556777889999999976544
No 262
>PLN02389 biotin synthase
Probab=96.77 E-value=0.099 Score=54.21 Aligned_cols=196 Identities=13% Similarity=0.159 Sum_probs=109.9
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCCC---HHH----HHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEecc
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKGS---FEN----LEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA 270 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~Gs---~ed----L~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa 270 (407)
+..+.|+.+.+.|+..+.+.|.-..-.|. +++ ++.+|+ ..++|...-...++.++.+-+++|+|.+..+..
T Consensus 120 eIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~--~~l~i~~s~G~l~~E~l~~LkeAGld~~~~~Le 197 (379)
T PLN02389 120 DVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRG--MGMEVCCTLGMLEKEQAAQLKEAGLTAYNHNLD 197 (379)
T ss_pred HHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhc--CCcEEEECCCCCCHHHHHHHHHcCCCEEEeeec
Confidence 34444566667899999887532211221 233 333332 356665555568889999999999999988665
Q ss_pred C----C-------CHHHHHHHHHHHHHcCCcEEE----Ee-CCHHH----HHHHhccc-CCcEEEeeccccccccccccc
Q 015424 271 V----L-------PDLDIRYMTKICKLLGLTALV----EV-HDERE----MDRVLGIE-GIELIGINNRNLAISIFSYRT 329 (407)
Q Consensus 271 i----L-------~~~~L~~Li~~a~~LGL~aLV----EV-ht~eE----lerAl~l~-Ga~iIGINnRdL~~~~~~~t~ 329 (407)
- . +-++.-+.++.++++|+.+.. -. .+.+| +....++. .++.|.+|.-.. .++++=
T Consensus 198 Ts~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l~~l~P---~~GTpL 274 (379)
T PLN02389 198 TSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPINALVA---VKGTPL 274 (379)
T ss_pred CChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECCCCCHHHHHHHHHHHHhcccCCcEEeccccee---cCCCcC
Confidence 1 1 224455778889999997621 11 13333 22222331 467788865322 222211
Q ss_pred ccc-ccCchhHHHHhhcccccccccCCceEEEeeCCC-CHHHHHHHHHcCCCEEEEccc-ccCCCChHHHHHhh
Q 015424 330 ETF-EVDNSNTKKLLEGERGEIIRQKNIIVVGESGLF-TPDDIAYVQEAGVKAVLVGES-IVKQDDPGKGITGL 400 (407)
Q Consensus 330 ~Tf-~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~-t~eD~~~l~~~GadaVLVGea-Lmk~~dp~~~i~~L 400 (407)
... .++.....+.+...| .+.|+..+-++.|-+. .++.......+||+++++|.. |+......+.=.++
T Consensus 275 ~~~~~~s~~e~lr~iAi~R--l~lP~~~i~i~~gr~~l~~~~~~~~l~~GAN~~~~g~~~Ltt~g~~~~~d~~~ 346 (379)
T PLN02389 275 EDQKPVEIWEMVRMIATAR--IVMPKAMVRLSAGRVRFSMAEQALCFLAGANSIFTGDKLLTTPNNDFDADQAM 346 (379)
T ss_pred CCCCCCCHHHHHHHHHHHH--HHCCCccccccccccccChhHHHHHHHhCCCEEEECCcccCCCCCChHHHHHH
Confidence 111 234433333332211 1335555666655533 445467788999999999998 87765544333333
No 263
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=96.75 E-value=0.042 Score=52.98 Aligned_cols=162 Identities=18% Similarity=0.189 Sum_probs=95.1
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhc--CCCCcEEe-ccc--cCCH-----HHHHHHHHcCCCEEEE
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSA--GVKCPLLC-KEF--IVDA-----WQIYYARTKGADAVLL 267 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a--~v~lPVL~-KDF--Iid~-----~QI~eAr~~GADaVLL 267 (407)
+..++++...+.|..++.| .+.++..+++. +..+.|-+ =+| ...+ .++.+|...|||-|-+
T Consensus 23 ~i~~~~~~A~~~~~~avcv---------~p~~v~~a~~~l~~~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~~GA~EiD~ 93 (221)
T PRK00507 23 DIDKLCDEAKEYGFASVCV---------NPSYVKLAAELLKGSDVKVCTVIGFPLGANTTAVKAFEAKDAIANGADEIDM 93 (221)
T ss_pred HHHHHHHHHHHhCCeEEEE---------CHHHHHHHHHHhCCCCCeEEEEecccCCCChHHHHHHHHHHHHHcCCceEee
Confidence 4455566667778888888 47888888753 12222221 143 1111 3677788899998765
Q ss_pred ecc--CCCHHHHHHHHHHHH---H----cCCcEEEEeCC--HHHHHHHhcc---cCCcEEEeeccccccccccccccccc
Q 015424 268 IAA--VLPDLDIRYMTKICK---L----LGLTALVEVHD--EREMDRVLGI---EGIELIGINNRNLAISIFSYRTETFE 333 (407)
Q Consensus 268 iaa--iL~~~~L~~Li~~a~---~----LGL~aLVEVht--~eElerAl~l---~Ga~iIGINnRdL~~~~~~~t~~Tf~ 333 (407)
..- .+...++.++.+... + .-+.+++|... .+|+.++.++ .|+++|-.| ||++...
T Consensus 94 Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTs------TG~~~~g---- 163 (221)
T PRK00507 94 VINIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTS------TGFSTGG---- 163 (221)
T ss_pred eccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcC------CCCCCCC----
Confidence 433 222212333333222 2 23777888884 5555554332 388887775 2222111
Q ss_pred cCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEccc
Q 015424 334 VDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGES 386 (407)
Q Consensus 334 vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGea 386 (407)
..++....+.+.. +..+.+.+.|||+|.+|+..+.++||+- ||++
T Consensus 164 at~~~v~~m~~~~------~~~~~IKasGGIrt~~~a~~~i~aGA~r--iGtS 208 (221)
T PRK00507 164 ATVEDVKLMRETV------GPRVGVKASGGIRTLEDALAMIEAGATR--LGTS 208 (221)
T ss_pred CCHHHHHHHHHHh------CCCceEEeeCCcCCHHHHHHHHHcCcce--EccC
Confidence 2334433343331 3468899999999999999999999875 4653
No 264
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=96.74 E-value=0.0093 Score=58.89 Aligned_cols=155 Identities=17% Similarity=0.186 Sum_probs=83.1
Q ss_pred CCcEEecc--cc---CCHH-HHHHHHHcCCCEEEEeccCC---------CH-HHHHHHHHHHHHc-CCcEEEEeC----C
Q 015424 239 KCPLLCKE--FI---VDAW-QIYYARTKGADAVLLIAAVL---------PD-LDIRYMTKICKLL-GLTALVEVH----D 297 (407)
Q Consensus 239 ~lPVL~KD--FI---id~~-QI~eAr~~GADaVLLiaaiL---------~~-~~L~~Li~~a~~L-GL~aLVEVh----t 297 (407)
++||+.-= .- ...| ...+....|||++=|..+.- .+ +...++.+..++. .+.++|-+. +
T Consensus 96 ~~pvi~Si~~~~~~~~~d~~~~a~~~~~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKL~p~~~~ 175 (295)
T PF01180_consen 96 DIPVIASINGDSEEEIEDWAELAKRLEAGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREAVDIPVFVKLSPNFTD 175 (295)
T ss_dssp CEEEEEEE-TSSSGHHHHHHHHHHHHHHHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHHHSSEEEEEE-STSSC
T ss_pred ceeEEEEeecCCchhHHHHHHHHHHhcCcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhccCCCEEEEecCCCCc
Confidence 57887321 11 2233 33344458999999987753 11 2344455555543 677777665 3
Q ss_pred HHHHHH---HhcccCCcEEEeecccccccccccccccccc-------------CchhHHHHhhcccccccccCCceEEEe
Q 015424 298 EREMDR---VLGIEGIELIGINNRNLAISIFSYRTETFEV-------------DNSNTKKLLEGERGEIIRQKNIIVVGE 361 (407)
Q Consensus 298 ~eEler---Al~l~Ga~iIGINnRdL~~~~~~~t~~Tf~v-------------Dl~~t~~L~~~~~~~~i~~~~v~vVAE 361 (407)
...+.. +.+ .|++-|...|+-+... ...-++..+ ....+.+.+..++. .+ +.++.+|+.
T Consensus 176 ~~~~~~~~~~~~-~g~~gi~~~Nt~~~~~--~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~-~~-~~~i~Iig~ 250 (295)
T PF01180_consen 176 IEPFAIAAELAA-DGADGIVAINTFGQGD--AIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRK-AL-GQDIPIIGV 250 (295)
T ss_dssp HHHHHHHHHHHT-HTECEEEE---EEEEE---EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHH-HT-TTSSEEEEE
T ss_pred hHHHHHHHHhhc-cceeEEEEecCccCcc--cccchhcceeeccccCCcCchhhhhHHHHHHHHHHh-cc-ccceEEEEe
Confidence 433323 333 3777666444311000 000011110 11122333322221 12 346899999
Q ss_pred eCCCCHHHHHHHHHcCCCEEEEcccc-cCCCChHHHHH
Q 015424 362 SGLFTPDDIAYVQEAGVKAVLVGESI-VKQDDPGKGIT 398 (407)
Q Consensus 362 SGI~t~eD~~~l~~~GadaVLVGeaL-mk~~dp~~~i~ 398 (407)
|||+|.+|+.++..+||++|=|++++ +++++....+.
T Consensus 251 GGI~s~~da~e~l~aGA~~Vqv~Sal~~~Gp~~~~~i~ 288 (295)
T PF01180_consen 251 GGIHSGEDAIEFLMAGASAVQVCSALIYRGPGVIRRIN 288 (295)
T ss_dssp SS--SHHHHHHHHHHTESEEEESHHHHHHGTTHHHHHH
T ss_pred CCcCCHHHHHHHHHhCCCHheechhhhhcCcHHHHHHH
Confidence 99999999999999999999999999 56776554443
No 265
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=96.73 E-value=0.012 Score=59.27 Aligned_cols=86 Identities=27% Similarity=0.315 Sum_probs=68.0
Q ss_pred CCCCCCCCHHHHHHHHHHcCCcEEEEEec--CCcCC--CCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHH-cCCCEE
Q 015424 191 GILREDFDPVEIARSYEKGGAACLSILTD--EKYFK--GSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYART-KGADAV 265 (407)
Q Consensus 191 G~i~~~~dp~~iA~ay~~~GA~aISVLTd--~~~F~--Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~-~GADaV 265 (407)
|+-....+..++|+.+++.|+++|.|-.- +..+. .+++.+..+++. +++||+.-.-|.++.++.++.. .|||+|
T Consensus 143 G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~-~~iPVI~nGgI~s~~da~~~l~~~gadgV 221 (321)
T PRK10415 143 GWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQK-VSIPVIANGDITDPLKARAVLDYTGADAL 221 (321)
T ss_pred cccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHh-cCCcEEEeCCCCCHHHHHHHHhccCCCEE
Confidence 44333457889999999999999987632 23333 467888888886 8999999888999999999886 699999
Q ss_pred EEeccCCCHHHH
Q 015424 266 LLIAAVLPDLDI 277 (407)
Q Consensus 266 LLiaaiL~~~~L 277 (407)
.+.-.++.+..+
T Consensus 222 miGR~~l~nP~i 233 (321)
T PRK10415 222 MIGRAAQGRPWI 233 (321)
T ss_pred EEChHhhcCChH
Confidence 999888866554
No 266
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=96.72 E-value=0.025 Score=57.59 Aligned_cols=51 Identities=10% Similarity=0.128 Sum_probs=46.4
Q ss_pred CceEEEeeCCCCHHHHHHHHHcC-CCEEEEcccccCCCChHHHHHhhhcCcc
Q 015424 355 NIIVVGESGLFTPDDIAYVQEAG-VKAVLVGESIVKQDDPGKGITGLFGKDI 405 (407)
Q Consensus 355 ~v~vVAESGI~t~eD~~~l~~~G-adaVLVGeaLmk~~dp~~~i~~L~~~~~ 405 (407)
+++|++.|+|.|++++.++.+.| +|.|.+|.+++..|+...++++.++.++
T Consensus 275 ~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~~~~~~~ 326 (337)
T PRK13523 275 NIATGAVGLITSGAQAEEILQNNRADLIFIGRELLRNPYFPRIAAKELGFEI 326 (337)
T ss_pred CCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHhCccHHHHHHHHcCCCC
Confidence 57899999999999999999987 9999999999999999999988877554
No 267
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=96.70 E-value=0.043 Score=55.31 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=40.2
Q ss_pred CceEEEeeCCCCHHHHHHHHHcC-CCEEEEcccccCCCChHHHHH
Q 015424 355 NIIVVGESGLFTPDDIAYVQEAG-VKAVLVGESIVKQDDPGKGIT 398 (407)
Q Consensus 355 ~v~vVAESGI~t~eD~~~l~~~G-adaVLVGeaLmk~~dp~~~i~ 398 (407)
++++++.|||.+++++..+.+.| +|.|-+|.+++..++...++.
T Consensus 290 ~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~dP~~~~k~~ 334 (336)
T cd02932 290 GIPVIAVGLITDPEQAEAILESGRADLVALGRELLRNPYWPLHAA 334 (336)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHhCccHHHHHh
Confidence 57899999999999999999998 999999999999999876654
No 268
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=96.69 E-value=0.25 Score=49.59 Aligned_cols=177 Identities=14% Similarity=0.153 Sum_probs=116.2
Q ss_pred HHHHHHHHHHcCCcEEEEEecC--CcCCCCHHHHHHH----Hhc-CCCCcEE-eccccCCHHHHHHHHHcCCCEEEEecc
Q 015424 199 PVEIARSYEKGGAACLSILTDE--KYFKGSFENLEAV----RSA-GVKCPLL-CKEFIVDAWQIYYARTKGADAVLLIAA 270 (407)
Q Consensus 199 p~~iA~ay~~~GA~aISVLTd~--~~F~Gs~edL~~V----r~a-~v~lPVL-~KDFIid~~QI~eAr~~GADaVLLiaa 270 (407)
...+-++.++.++..|-=++.. +|+.| ++.+... .+. ..++||- .-|-..|...|.+|..+|-+.|..+.+
T Consensus 31 ~~avi~AAee~~sPvIlq~~~~~~~~~~g-~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~GftSVMiDgS 109 (288)
T TIGR00167 31 INAVLEAAAEEKSPVIIQFSNGAAKYIAG-LGAISAMVKAMSEAYPYGVPVALHLDHGASEEDCAQAVKAGFSSVMIDGS 109 (288)
T ss_pred HHHHHHHHHHHCCCEEEECCcchhhccCC-HHHHHHHHHHHHHhccCCCcEEEECCCCCCHHHHHHHHHcCCCEEEecCC
Confidence 3344555566565544433322 22233 3333322 122 1278874 677777889999999999999999999
Q ss_pred CCCHH----HHHHHHHHHHHcCCcEEEE-------------------eCCHHHHHHHhcccCCcEEEeeccccccccccc
Q 015424 271 VLPDL----DIRYMTKICKLLGLTALVE-------------------VHDEREMDRVLGIEGIELIGINNRNLAISIFSY 327 (407)
Q Consensus 271 iL~~~----~L~~Li~~a~~LGL~aLVE-------------------Vht~eElerAl~l~Ga~iIGINnRdL~~~~~~~ 327 (407)
-|+-+ .-++++++||.+|+.+=.| -.+.+|+.+..+..|+|.+.|.--+. =|.
T Consensus 110 ~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~----HG~ 185 (288)
T TIGR00167 110 HEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAAIGNV----HGV 185 (288)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHhccCCcEEeeccCcc----ccc
Confidence 99753 3567888899888876333 22567887777655999988864433 222
Q ss_pred cccccc-cCchhHHHHhhcccccccccCCceEEEeeCCC-CHHHHHHHHHcCCCEEEEccccc
Q 015424 328 RTETFE-VDNSNTKKLLEGERGEIIRQKNIIVVGESGLF-TPDDIAYVQEAGVKAVLVGESIV 388 (407)
Q Consensus 328 t~~Tf~-vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~-t~eD~~~l~~~GadaVLVGeaLm 388 (407)
.+.... +|++...++.+.+ ++++|.=||=. ..++++++.++|+.-|=|++.+.
T Consensus 186 y~~~p~~Ld~~~L~~I~~~v--------~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~ 240 (288)
T TIGR00167 186 YKGEPKGLDFERLEEIQKYV--------NLPLVLHGGSGIPDEEIKKAISLGVVKVNIDTELQ 240 (288)
T ss_pred cCCCCCccCHHHHHHHHHHh--------CCCEEEeCCCCCCHHHHHHHHHcCCeEEEcChHHH
Confidence 223455 8888888886652 45555544443 45789999999999999999874
No 269
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=96.68 E-value=0.047 Score=54.82 Aligned_cols=134 Identities=15% Similarity=0.009 Sum_probs=75.2
Q ss_pred HcC-CCEEEEeccCC----------CHHHHHHHHHHHHH-cCCcEEEEeC---CHHHHHHHhcccCC-cEEEeecccccc
Q 015424 259 TKG-ADAVLLIAAVL----------PDLDIRYMTKICKL-LGLTALVEVH---DEREMDRVLGIEGI-ELIGINNRNLAI 322 (407)
Q Consensus 259 ~~G-ADaVLLiaaiL----------~~~~L~~Li~~a~~-LGL~aLVEVh---t~eElerAl~l~Ga-~iIGINnRdL~~ 322 (407)
.+| ||++=|..+.- +.+.+.++++.+++ ....++|-+. +..++.++....++ -+-|||..|-.+
T Consensus 116 ~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~ 195 (310)
T PRK02506 116 ASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYFTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIG 195 (310)
T ss_pred hcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhcCCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEeccCC
Confidence 467 99999988742 24567777777665 3455565555 45555544432111 233333322100
Q ss_pred --------cccccc--cccc-----ccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccc
Q 015424 323 --------SIFSYR--TETF-----EVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESI 387 (407)
Q Consensus 323 --------~~~~~t--~~Tf-----~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaL 387 (407)
+..... ...+ ......+.+.+..+.+ .+ +.++.+|+.|||.|.+|+.++..+||++|=||+++
T Consensus 196 ~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~-~~-~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~ 273 (310)
T PRK02506 196 NGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQ-RL-NPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTAL 273 (310)
T ss_pred CceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHH-hc-CCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHH
Confidence 000000 0000 0111122222222111 11 23589999999999999999999999999999999
Q ss_pred cC-CCChH
Q 015424 388 VK-QDDPG 394 (407)
Q Consensus 388 mk-~~dp~ 394 (407)
+. .++..
T Consensus 274 ~~~gp~~~ 281 (310)
T PRK02506 274 HKEGPAVF 281 (310)
T ss_pred HHhChHHH
Confidence 87 55543
No 270
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=96.68 E-value=0.031 Score=59.93 Aligned_cols=121 Identities=10% Similarity=0.121 Sum_probs=90.1
Q ss_pred CCCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEe-------
Q 015424 196 DFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLI------- 268 (407)
Q Consensus 196 ~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLi------- 268 (407)
..+..+-+++..++|++.|.+-+-.+.-...++.++.+|+...+++|++++. .+..+...+..+|||+|...
T Consensus 246 ~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v-~t~e~a~~a~~aGaD~i~vg~g~G~~~ 324 (505)
T PLN02274 246 RESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNV-VTMYQAQNLIQAGVDGLRVGMGSGSIC 324 (505)
T ss_pred CccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecC-CCHHHHHHHHHcCcCEEEECCCCCccc
Confidence 3466789999999999999987644333333467888987523688999984 77788888999999999763
Q ss_pred -ccC---C---CHHHHHHHHHHHHHcCCcEEEE--eCCHHHHHHHhcccCCcEEEeecc
Q 015424 269 -AAV---L---PDLDIRYMTKICKLLGLTALVE--VHDEREMDRVLGIEGIELIGINNR 318 (407)
Q Consensus 269 -aai---L---~~~~L~~Li~~a~~LGL~aLVE--Vht~eElerAl~l~Ga~iIGINnR 318 (407)
... . ....+..+.+.++..++.+++| +++..++.+|+.+ ||+.+.+-..
T Consensus 325 ~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~-GA~~V~vGs~ 382 (505)
T PLN02274 325 TTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTL-GASTVMMGSF 382 (505)
T ss_pred cCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHc-CCCEEEEchh
Confidence 111 0 1113445666677789999998 6799999999998 9998888544
No 271
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=96.66 E-value=0.017 Score=59.85 Aligned_cols=164 Identities=20% Similarity=0.152 Sum_probs=94.9
Q ss_pred EEEEeccc----CCCcCCCCCCCCHHHHHHHHH-HcCCcEEEEEecCCcCC--CCHHHHHHHHhcCCC-CcEEeccccC-
Q 015424 179 LIAEVKKA----SPSRGILREDFDPVEIARSYE-KGGAACLSILTDEKYFK--GSFENLEAVRSAGVK-CPLLCKEFIV- 249 (407)
Q Consensus 179 vIAEvKra----SPSkG~i~~~~dp~~iA~ay~-~~GA~aISVLTd~~~F~--Gs~edL~~Vr~a~v~-lPVL~KDFIi- 249 (407)
=..|+|-. -...|.+...-.-.++|..-. .-|-.++|--.++.|.. +-.+.++.+|+. ++ +||..|-...
T Consensus 147 ~~ieik~~QGAkpg~gg~l~~~Kv~~eiA~~r~~~~g~~~isp~~~~~~~~~~~l~~~I~~lr~~-~~~~pV~vK~~~~~ 225 (392)
T cd02808 147 DAIEIKIGQGAKPGEGGHLPGEKVTEEIAKIRGIPPGVDLISPPPHHDIYSIEDLAQLIEDLREA-TGGKPIGVKLVAGH 225 (392)
T ss_pred cEEEEEeccCCCCCCCCccccccCCHHHHHHhCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHh-CCCceEEEEECCCC
Confidence 35777744 234455555444556776653 35556666433333221 126778888886 66 9999998655
Q ss_pred CHHHHHHHHHcC-CCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeecccccccccccc
Q 015424 250 DAWQIYYARTKG-ADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYR 328 (407)
Q Consensus 250 d~~QI~eAr~~G-ADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t 328 (407)
++..+..+...| +|+|.+.-.-=.. |+.. .. -.++..+
T Consensus 226 ~~~~~a~~~~~~g~D~I~VsG~~Ggt-------------g~~~-------------~~-------~~~~~g~-------- 264 (392)
T cd02808 226 GEGDIAAGVAAAGADFITIDGAEGGT-------------GAAP-------------LT-------FIDHVGL-------- 264 (392)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCCCC-------------CCCc-------------cc-------ccccCCc--------
Confidence 777777776555 9999986542211 1000 00 0000111
Q ss_pred ccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015424 329 TETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 390 (407)
Q Consensus 329 ~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~ 390 (407)
.|+. -+....+.+... .+ ..++.+|+.|||.+..|+.++..+|||+|-+|+.+|.+
T Consensus 265 -pt~~-~L~~v~~~~~~~---~~-~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~a 320 (392)
T cd02808 265 -PTEL-GLARAHQALVKN---GL-RDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIA 320 (392)
T ss_pred -cHHH-HHHHHHHHHHHc---CC-CCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHh
Confidence 1110 000011111110 01 13589999999999999999999999999999999954
No 272
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=96.64 E-value=0.01 Score=58.22 Aligned_cols=74 Identities=28% Similarity=0.279 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCC-C--CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCC
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFK-G--SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~-G--s~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~ 273 (407)
|| ..|+.+++.|+++|..+.++---+ | ++++|+.+++. .++||++-..|-.|.|+++|.++|||+|++..++..
T Consensus 133 d~-~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~-~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~ 209 (248)
T cd04728 133 DP-VLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIER-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAK 209 (248)
T ss_pred CH-HHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHh-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcC
Confidence 44 488999999999997654443211 1 57889999986 789999999999999999999999999999999885
No 273
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=96.63 E-value=0.26 Score=49.21 Aligned_cols=140 Identities=16% Similarity=0.210 Sum_probs=103.3
Q ss_pred CCCcEE-eccccCCHHHHHHHHHcCCCEEEEeccCCCHH----HHHHHHHHHHHcCCcEEEE-----------------e
Q 015424 238 VKCPLL-CKEFIVDAWQIYYARTKGADAVLLIAAVLPDL----DIRYMTKICKLLGLTALVE-----------------V 295 (407)
Q Consensus 238 v~lPVL-~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~----~L~~Li~~a~~LGL~aLVE-----------------V 295 (407)
.++||- .-|-.-|...|.+|..+|-+.|.++++.|+.+ .-++++++||..|+.+=.| -
T Consensus 68 ~~VPV~lHLDH~~~~~~i~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~ 147 (276)
T cd00947 68 ASVPVALHLDHGSSFELIKRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLL 147 (276)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccC
Confidence 478874 66777788999999999999999999999764 3567888899887776222 2
Q ss_pred CCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEE--eeCCCCHHHHHHH
Q 015424 296 HDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVG--ESGLFTPDDIAYV 373 (407)
Q Consensus 296 ht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVA--ESGI~t~eD~~~l 373 (407)
.+++|+.+..+..|+|.+.+..=+. || .|...+...|++...+|.+.+ ++++|. .||+ ..++++++
T Consensus 148 T~pe~a~~Fv~~TgvD~LAvsiGt~--HG-~Y~~~~p~L~~~~L~~i~~~~--------~vPLVlHGgSG~-~~e~~~~a 215 (276)
T cd00947 148 TDPEEAEEFVEETGVDALAVAIGTS--HG-AYKGGEPKLDFDRLKEIAERV--------NVPLVLHGGSGI-PDEQIRKA 215 (276)
T ss_pred CCHHHHHHHHHHHCCCEEEeccCcc--cc-ccCCCCCccCHHHHHHHHHHh--------CCCEEEeCCCCC-CHHHHHHH
Confidence 3678887777645999999864433 11 233226778998888887752 344554 4555 55779999
Q ss_pred HHcCCCEEEEcccccC
Q 015424 374 QEAGVKAVLVGESIVK 389 (407)
Q Consensus 374 ~~~GadaVLVGeaLmk 389 (407)
.++|+.-|=|++.+..
T Consensus 216 i~~Gi~KiNi~T~l~~ 231 (276)
T cd00947 216 IKLGVCKININTDLRL 231 (276)
T ss_pred HHcCCeEEEeChHHHH
Confidence 9999999999998754
No 274
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.61 E-value=0.0088 Score=57.59 Aligned_cols=47 Identities=23% Similarity=0.303 Sum_probs=41.1
Q ss_pred cCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEccccc
Q 015424 334 VDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIV 388 (407)
Q Consensus 334 vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLm 388 (407)
.|++...++.+. .++++.+.|||+|.+|++++.++|+++|+||++.+
T Consensus 60 ~n~~~i~~i~~~--------~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~ 106 (228)
T PRK04128 60 KNLDVVKNIIRE--------TGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF 106 (228)
T ss_pred chHHHHHHHHhh--------CCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc
Confidence 577777777654 35789999999999999999999999999999998
No 275
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=96.60 E-value=0.006 Score=60.84 Aligned_cols=110 Identities=16% Similarity=0.187 Sum_probs=76.2
Q ss_pred HHHHHHHHcCCcEEEEEecCCcCCC-----------------------------------CHHHHHHHHhcCCCCcEE--
Q 015424 201 EIARSYEKGGAACLSILTDEKYFKG-----------------------------------SFENLEAVRSAGVKCPLL-- 243 (407)
Q Consensus 201 ~iA~ay~~~GA~aISVLTd~~~F~G-----------------------------------s~edL~~Vr~a~v~lPVL-- 243 (407)
+=|....+.||+.|+- |...|.+. +++.|+.+++. +++||+
T Consensus 123 eEal~a~~~Gad~I~T-Tl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~-~~iPVV~i 200 (283)
T cd04727 123 GEALRRISEGAAMIRT-KGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKL-GRLPVVNF 200 (283)
T ss_pred HHHHHHHHCCCCEEEe-cCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHh-cCCCeEEE
Confidence 4455566778999886 44444443 56778888886 789997
Q ss_pred eccccCCHHHHHHHHHcCCCEEEEeccCCC----HHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccc
Q 015424 244 CKEFIVDAWQIYYARTKGADAVLLIAAVLP----DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRN 319 (407)
Q Consensus 244 ~KDFIid~~QI~eAr~~GADaVLLiaaiL~----~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRd 319 (407)
+=..|.+|.++.++..+|||+|+++.++.. ....++|.+..+.+ -+-|...|+.. .+ |-.+.|+|-+.
T Consensus 201 AeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~~-----~~~~~~~e~~~--~~-~~~m~~~~~~~ 272 (283)
T cd04727 201 AAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTHY-----DDPEILAEVSE--GL-GEAMVGIDIAS 272 (283)
T ss_pred EeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHhc-----CCHHHHHHHHc--cc-ccCCCCccccc
Confidence 888888999999999999999999999873 23355555544442 22344444333 44 55689998776
Q ss_pred c
Q 015424 320 L 320 (407)
Q Consensus 320 L 320 (407)
+
T Consensus 273 ~ 273 (283)
T cd04727 273 L 273 (283)
T ss_pred C
Confidence 5
No 276
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=96.59 E-value=0.0099 Score=57.99 Aligned_cols=92 Identities=13% Similarity=0.114 Sum_probs=64.3
Q ss_pred CCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHH
Q 015424 296 HDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQE 375 (407)
Q Consensus 296 ht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~ 375 (407)
.|+.|+-+.+.-.|++-|=+..-|-++ ..-..|++...++.+. .++++.+.|||++.+|+.++.+
T Consensus 30 ~dp~~~a~~~~~~g~~~l~i~Dl~~~~-------~~~~~n~~~i~~i~~~--------~~~pv~~gGGi~s~~d~~~l~~ 94 (258)
T PRK01033 30 GDPINAVRIFNEKEVDELIVLDIDASK-------RGSEPNYELIENLASE--------CFMPLCYGGGIKTLEQAKKIFS 94 (258)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCc-------CCCcccHHHHHHHHHh--------CCCCEEECCCCCCHHHHHHHHH
Confidence 366666555443477655554332211 1234677777777764 3578999999999999999999
Q ss_pred cCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 376 AGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 376 ~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
+|+++|+||+++++.++..+.+.+.++
T Consensus 95 ~G~~~vvigs~~~~~~~~~~~~~~~~~ 121 (258)
T PRK01033 95 LGVEKVSINTAALEDPDLITEAAERFG 121 (258)
T ss_pred CCCCEEEEChHHhcCHHHHHHHHHHhC
Confidence 999999999999998776555555443
No 277
>PRK00208 thiG thiazole synthase; Reviewed
Probab=96.56 E-value=0.012 Score=57.78 Aligned_cols=74 Identities=28% Similarity=0.271 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcC-CC--CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCC
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYF-KG--SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F-~G--s~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~ 273 (407)
|| ..|+.+++.|+++|..+.++--- .| .+++++.+++. .++||++-..|-.|.|+++|.++|||+|++..++..
T Consensus 133 d~-~~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~-~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItk 209 (250)
T PRK00208 133 DP-VLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIIIEQ-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAV 209 (250)
T ss_pred CH-HHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHh-cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhC
Confidence 44 47899999999999665444211 11 47889999986 789999999999999999999999999999999885
No 278
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=96.52 E-value=0.043 Score=51.93 Aligned_cols=151 Identities=17% Similarity=0.212 Sum_probs=91.6
Q ss_pred cCCCCHHHHHHHHhcCCCCcEE--e--ccccCCH-HHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCC--cEEEE
Q 015424 222 YFKGSFENLEAVRSAGVKCPLL--C--KEFIVDA-WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGL--TALVE 294 (407)
Q Consensus 222 ~F~Gs~edL~~Vr~a~v~lPVL--~--KDFIid~-~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL--~aLVE 294 (407)
|...+.+-++.+|+. . .||+ . -|..-.. .++..+..+|||+|.+.+ ..+...++.+++.+++.|. -++++
T Consensus 34 ~~~~G~~~v~~l~~~-~-~~v~lD~K~~Dig~t~~~~~~~~~~~gad~vTvh~-~~g~~~l~~~~~~~~~~~~~v~~v~~ 110 (213)
T TIGR01740 34 LLDGGDKIIDELAKL-N-KLIFLDLKFADIPNTVKLQYESKIKQGADMVNVHG-VAGSESVEAAKEAASEGGRGLLAVTE 110 (213)
T ss_pred HHhcCHHHHHHHHHc-C-CCEEEEEeecchHHHHHHHHHHHHhcCCCEEEEcC-CCCHHHHHHHHHHhhcCCCeEEEEEc
Confidence 334556888889875 3 3453 3 3533222 345557789999999865 4455568999998887665 55677
Q ss_pred eCCHHHHH-------HHhcc----cCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeC
Q 015424 295 VHDEREMD-------RVLGI----EGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESG 363 (407)
Q Consensus 295 Vht~eEle-------rAl~l----~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESG 363 (407)
..+..+.+ .++++ ...-+.|+ -...+....+.+. .+ + .++.-.|
T Consensus 111 lss~~~~~~~~~~~~~v~~~a~~~~~~g~~g~-----------------v~~~~~~~~ir~~------~~-~-~~~vtPG 165 (213)
T TIGR01740 111 LTSMGSLDYGEDTMEKVLEYAKEAKAFGLDGP-----------------VCSAEEAKEIRKF------TG-D-FLILTPG 165 (213)
T ss_pred CCCCChhhhCcCHHHHHHHHHHHhhhcCCeEE-----------------EeCHHHHHHHHHh------cC-C-ceEEeCC
Confidence 77654332 22211 00001121 1111222222221 12 3 5677788
Q ss_pred CCCHH--H--------HHHHHHcCCCEEEEcccccCCCChHHHHHhh
Q 015424 364 LFTPD--D--------IAYVQEAGVKAVLVGESIVKQDDPGKGITGL 400 (407)
Q Consensus 364 I~t~e--D--------~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L 400 (407)
|.-.. . +..+.++|+|-+++|.+|++++||.+.++++
T Consensus 166 I~~~g~~~~dq~~~~~~~~~~~~Gad~iVvGr~I~~~~d~~~~~~~~ 212 (213)
T TIGR01740 166 IRLQSKGADDQQRVVTLEDAKEAGADVIIVGRGIYAAEDPVEAAKRI 212 (213)
T ss_pred cCCCCCCcCCccccCCHHHHHHcCCCEEEEChhhcCCCCHHHHHHHh
Confidence 86331 1 2678899999999999999999999998876
No 279
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=96.51 E-value=0.21 Score=51.50 Aligned_cols=177 Identities=15% Similarity=0.102 Sum_probs=115.3
Q ss_pred CCCCCCCHHHHHHHHHHcCCcEEEEE-----ecCCcCCC-CHH---HHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCC
Q 015424 192 ILREDFDPVEIARSYEKGGAACLSIL-----TDEKYFKG-SFE---NLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGA 262 (407)
Q Consensus 192 ~i~~~~dp~~iA~ay~~~GA~aISVL-----Td~~~F~G-s~e---dL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GA 262 (407)
.+....-..++|+...+.|+..+.-- |-|..|+| +.+ .|..+++. ..+|++.- +.|+.++..+..+ +
T Consensus 127 ~iE~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~-~Gl~~~t~--v~d~~~~~~l~~~-v 202 (360)
T PRK12595 127 SVESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADE-YGLAVISE--IVNPADVEVALDY-V 202 (360)
T ss_pred cccCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHH-cCCCEEEe--eCCHHHHHHHHHh-C
Confidence 34444456677888888777655533 44445777 334 45555554 68999983 4789999999999 9
Q ss_pred CEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHHHHhcc---cCCcEEEeecccccccccccccc-ccccC
Q 015424 263 DAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGI---EGIELIGINNRNLAISIFSYRTE-TFEVD 335 (407)
Q Consensus 263 DaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVh---t~eElerAl~l---~Ga~iIGINnRdL~~~~~~~t~~-Tf~vD 335 (407)
|.+-+.+..+.+- .|++.+.+.|..+++... +.+|+..|++. .|..-|.+-.|.. ..|++. ...+|
T Consensus 203 d~lkI~s~~~~n~---~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~----s~yp~~~~~~ld 275 (360)
T PRK12595 203 DVIQIGARNMQNF---ELLKAAGRVNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGI----RTYEKATRNTLD 275 (360)
T ss_pred CeEEECcccccCH---HHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCcc----CCCCCCCCCCcC
Confidence 9888888777764 356667788999999976 78888877653 2544455555443 233322 33468
Q ss_pred chhHHHHhhcccccccccCCceEEE-eeCCCC-----HHHHHHHHHcCCCEEEEcccc
Q 015424 336 NSNTKKLLEGERGEIIRQKNIIVVG-ESGLFT-----PDDIAYVQEAGVKAVLVGESI 387 (407)
Q Consensus 336 l~~t~~L~~~~~~~~i~~~~v~vVA-ESGI~t-----~eD~~~l~~~GadaVLVGeaL 387 (407)
+.....|.+. .+++|+. .+-... +.-......+||||++|-.-+
T Consensus 276 l~~i~~lk~~--------~~~PV~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 276 ISAVPILKQE--------THLPVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred HHHHHHHHHH--------hCCCEEEeCCCCCcchhhHHHHHHHHHHcCCCeEEEEecC
Confidence 8877766553 2456666 333222 223445678999999998877
No 280
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=96.49 E-value=0.015 Score=57.50 Aligned_cols=79 Identities=30% Similarity=0.255 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHcCCcEEEEEe-------cC-----------CcCCC------CHHHHHHHHhcCCCCcEEeccccCCHHH
Q 015424 198 DPVEIARSYEKGGAACLSILT-------DE-----------KYFKG------SFENLEAVRSAGVKCPLLCKEFIVDAWQ 253 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLT-------d~-----------~~F~G------s~edL~~Vr~a~v~lPVL~KDFIid~~Q 253 (407)
+..++|+.+++.|+++|.+.. |. ..+.| +++.+..+++. +++||+.-..|.++.+
T Consensus 170 ~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~-~~ipvi~~GGI~~~~d 248 (301)
T PRK07259 170 DIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQA-VDIPIIGMGGISSAED 248 (301)
T ss_pred hHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHh-CCCCEEEECCCCCHHH
Confidence 788999999999999997731 11 11222 46788888886 8999999999999999
Q ss_pred HHHHHHcCCCEEEEeccCCCHHHH
Q 015424 254 IYYARTKGADAVLLIAAVLPDLDI 277 (407)
Q Consensus 254 I~eAr~~GADaVLLiaaiL~~~~L 277 (407)
+.++..+|||+|-+...++.+.++
T Consensus 249 a~~~l~aGAd~V~igr~ll~~P~~ 272 (301)
T PRK07259 249 AIEFIMAGASAVQVGTANFYDPYA 272 (301)
T ss_pred HHHHHHcCCCceeEcHHHhcCcHH
Confidence 999999999999998887764433
No 281
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=96.46 E-value=0.015 Score=59.39 Aligned_cols=136 Identities=16% Similarity=0.265 Sum_probs=78.9
Q ss_pred CCHHHHHHHHHcCCCEEEEeccCCCH----------HHHHHHHHHHHHcCCcEEEEe--CCH---------------H--
Q 015424 249 VDAWQIYYARTKGADAVLLIAAVLPD----------LDIRYMTKICKLLGLTALVEV--HDE---------------R-- 299 (407)
Q Consensus 249 id~~QI~eAr~~GADaVLLiaaiL~~----------~~L~~Li~~a~~LGL~aLVEV--ht~---------------e-- 299 (407)
+..+-+.+++.+|||+|-+..-.-++ +.+.++.+.|+..||..|+|+ ... +
T Consensus 107 ~~~~sve~a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V 186 (340)
T PRK12858 107 LDNWSVRRIKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKV 186 (340)
T ss_pred cccccHHHHHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHH
Confidence 34445788999999999887665544 137778888999999999993 221 1
Q ss_pred -HH-HHHh--cccCCcEEEeeccccccccccccccccccCc----hhHHHHhhcccccccccCCceEEEeeCCCCHH---
Q 015424 300 -EM-DRVL--GIEGIELIGINNRNLAISIFSYRTETFEVDN----SNTKKLLEGERGEIIRQKNIIVVGESGLFTPD--- 368 (407)
Q Consensus 300 -El-erAl--~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl----~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~e--- 368 (407)
++ ..+. ++ |+|++=+.-..-....-|+........- +.+.++.... + --++|+.||. +.+
T Consensus 187 ~~a~r~~~~~el-GaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~------~-~P~vvlsgG~-~~~~f~ 257 (340)
T PRK12858 187 IKTMEEFSKPRY-GVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDAT------D-LPFIFLSAGV-SPELFR 257 (340)
T ss_pred HHHHHHHhhhcc-CCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhC------C-CCEEEECCCC-CHHHHH
Confidence 22 2223 26 8888877432100000000000000011 2334443321 1 1266778887 544
Q ss_pred -HHHHHHHcCC--CEEEEcccccCCCCh
Q 015424 369 -DIAYVQEAGV--KAVLVGESIVKQDDP 393 (407)
Q Consensus 369 -D~~~l~~~Ga--daVLVGeaLmk~~dp 393 (407)
.+...+++|+ .||++|.++.+...+
T Consensus 258 ~~l~~A~~aGa~f~Gvl~GRniwq~~v~ 285 (340)
T PRK12858 258 RTLEFACEAGADFSGVLCGRATWQDGIE 285 (340)
T ss_pred HHHHHHHHcCCCccchhhhHHHHhhhhc
Confidence 4456778899 999999999876554
No 282
>PLN02535 glycolate oxidase
Probab=96.42 E-value=0.035 Score=57.35 Aligned_cols=92 Identities=16% Similarity=0.302 Sum_probs=72.0
Q ss_pred CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEecc---CC--CHHHHHHHHHHHHHc--CCcEEEE--eC
Q 015424 226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA---VL--PDLDIRYMTKICKLL--GLTALVE--VH 296 (407)
Q Consensus 226 s~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa---iL--~~~~L~~Li~~a~~L--GL~aLVE--Vh 296 (407)
++++++.+|+. .++||+.|+. .++.....+..+|+|+|.+.-. .+ ....+..|.+..+.. .+.++++ |+
T Consensus 211 tW~~i~~lr~~-~~~PvivKgV-~~~~dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~dGGIr 288 (364)
T PLN02535 211 SWKDIEWLRSI-TNLPILIKGV-LTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVR 288 (364)
T ss_pred CHHHHHHHHhc-cCCCEEEecC-CCHHHHHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEeeCCCC
Confidence 58999999986 8999999996 8888899999999999987421 11 223355566655544 4777776 67
Q ss_pred CHHHHHHHhcccCCcEEEeecccc
Q 015424 297 DEREMDRVLGIEGIELIGINNRNL 320 (407)
Q Consensus 297 t~eElerAl~l~Ga~iIGINnRdL 320 (407)
+-.++.+++.+ ||+.+++-..-|
T Consensus 289 ~g~Dv~KALal-GA~aV~vGr~~l 311 (364)
T PLN02535 289 RGTDVFKALAL-GAQAVLVGRPVI 311 (364)
T ss_pred CHHHHHHHHHc-CCCEEEECHHHH
Confidence 99999999998 999999976655
No 283
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=96.42 E-value=0.36 Score=48.39 Aligned_cols=141 Identities=14% Similarity=0.163 Sum_probs=102.8
Q ss_pred CCCcEE-eccccCCHHHHHHHHHcCCCEEEEeccCCCHH----HHHHHHHHHHHcCCcEEEE------------------
Q 015424 238 VKCPLL-CKEFIVDAWQIYYARTKGADAVLLIAAVLPDL----DIRYMTKICKLLGLTALVE------------------ 294 (407)
Q Consensus 238 v~lPVL-~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~----~L~~Li~~a~~LGL~aLVE------------------ 294 (407)
.++||- .-|-.-|...|.+|..+|-+.|.++++-|+-+ .-++++++||.+|+.+=.|
T Consensus 73 ~~VPValHLDH~~~~e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~ 152 (284)
T PRK12737 73 YNIPLALHLDHHEDLDDIKKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDA 152 (284)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccc
Confidence 478874 66777778899999999999999999999753 3567889999988776222
Q ss_pred -eCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHH
Q 015424 295 -VHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYV 373 (407)
Q Consensus 295 -Vht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l 373 (407)
-.|++|+.+..+..|+|.+.|..=+. =|.-+.....|++...++.+.+ .-..++=..||+ ..++++++
T Consensus 153 ~~T~peeA~~Fv~~TgvD~LAvaiGt~----HG~y~~~p~Ld~~~L~~I~~~~------~iPLVlHGgSG~-~~e~~~ka 221 (284)
T PRK12737 153 MYTNPDAAAEFVERTGIDSLAVAIGTA----HGLYKGEPKLDFERLAEIREKV------SIPLVLHGASGV-PDEDVKKA 221 (284)
T ss_pred cCCCHHHHHHHHHHhCCCEEeeccCcc----ccccCCCCcCCHHHHHHHHHHh------CCCEEEeCCCCC-CHHHHHHH
Confidence 23667887777645999988864333 2222235678988888886642 112344456777 57889999
Q ss_pred HHcCCCEEEEcccccC
Q 015424 374 QEAGVKAVLVGESIVK 389 (407)
Q Consensus 374 ~~~GadaVLVGeaLmk 389 (407)
.++|+.-|=|++.+..
T Consensus 222 i~~Gi~KiNi~T~l~~ 237 (284)
T PRK12737 222 ISLGICKVNVATELKI 237 (284)
T ss_pred HHCCCeEEEeCcHHHH
Confidence 9999999999998754
No 284
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=96.41 E-value=0.38 Score=48.20 Aligned_cols=141 Identities=14% Similarity=0.183 Sum_probs=103.4
Q ss_pred CCCcEE-eccccCCHHHHHHHHHcCCCEEEEeccCCCHH----HHHHHHHHHHHcCCcEEEE------------------
Q 015424 238 VKCPLL-CKEFIVDAWQIYYARTKGADAVLLIAAVLPDL----DIRYMTKICKLLGLTALVE------------------ 294 (407)
Q Consensus 238 v~lPVL-~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~----~L~~Li~~a~~LGL~aLVE------------------ 294 (407)
.++||- .-|-.-+...+.+|..+|-+.|.++.+-|+-+ .-++++++||.+|+.+=.|
T Consensus 71 ~~VPValHLDHg~~~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~ 150 (282)
T TIGR01858 71 YNMPLALHLDHHESLDDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDA 150 (282)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchh
Confidence 478974 66777788899999999999999999999753 3567888899887766111
Q ss_pred -eCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHH
Q 015424 295 -VHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYV 373 (407)
Q Consensus 295 -Vht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l 373 (407)
..+.+|+.+..+..|+|.+.|.--+. =|.-+.+...|++..++|.+.+ .-..++=..||+ ..++++++
T Consensus 151 ~~T~peea~~Fv~~TgvD~LAvaiGt~----HG~yk~~p~Ldf~~L~~I~~~~------~iPLVlHGgSG~-~~e~~~~a 219 (282)
T TIGR01858 151 LYTDPQEAKEFVEATGVDSLAVAIGTA----HGLYKKTPKLDFDRLAEIREVV------DVPLVLHGASDV-PDEDVRRT 219 (282)
T ss_pred ccCCHHHHHHHHHHHCcCEEecccCcc----ccCcCCCCccCHHHHHHHHHHh------CCCeEEecCCCC-CHHHHHHH
Confidence 23567887777655999988864433 2222245678988888886642 112344456777 57889999
Q ss_pred HHcCCCEEEEcccccC
Q 015424 374 QEAGVKAVLVGESIVK 389 (407)
Q Consensus 374 ~~~GadaVLVGeaLmk 389 (407)
.++|+.-|=|++.|..
T Consensus 220 i~~Gi~KiNi~T~l~~ 235 (282)
T TIGR01858 220 IELGICKVNVATELKI 235 (282)
T ss_pred HHcCCeEEEeCcHHHH
Confidence 9999999999998864
No 285
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=96.39 E-value=0.016 Score=59.10 Aligned_cols=45 Identities=22% Similarity=0.325 Sum_probs=41.6
Q ss_pred CceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHh
Q 015424 355 NIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITG 399 (407)
Q Consensus 355 ~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~ 399 (407)
+++||+.|||+|++++.++.+.|+|.|-+|.+++..+|...++++
T Consensus 284 ~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~liadPdl~~k~~~ 328 (353)
T cd04735 284 RLPLIAVGSINTPDDALEALETGADLVAIGRGLLVDPDWVEKIKE 328 (353)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHhCccHHHHHHc
Confidence 578999999999999999999999999999999999998877765
No 286
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=96.36 E-value=0.07 Score=53.93 Aligned_cols=45 Identities=11% Similarity=0.164 Sum_probs=40.9
Q ss_pred CceEEEeeCCCCHHHHHHHHHcC-CCEEEEcccccCCCChHHHHHh
Q 015424 355 NIIVVGESGLFTPDDIAYVQEAG-VKAVLVGESIVKQDDPGKGITG 399 (407)
Q Consensus 355 ~v~vVAESGI~t~eD~~~l~~~G-adaVLVGeaLmk~~dp~~~i~~ 399 (407)
+++|++.|||.+++++.++.+.| +|.|.+|.+++..|+...++++
T Consensus 292 ~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~iadP~~~~k~~~ 337 (338)
T cd04733 292 KTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLALEPDLPNKLLA 337 (338)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhhCccHHHHHhc
Confidence 67899999999999999999887 9999999999999998877753
No 287
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=96.36 E-value=0.017 Score=55.89 Aligned_cols=71 Identities=23% Similarity=0.240 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEecc
Q 015424 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA 270 (407)
Q Consensus 197 ~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa 270 (407)
.+..++|+.++++|+++||+-+ .+.|...|+..|++..+++||+.-.-|.+..++.+....|||+|.+.-.
T Consensus 152 ~~~~~la~~l~~aG~d~ihv~~---~~~g~~ad~~~I~~i~~~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 152 VDDEELARLIEKAGADIIHVDA---MDPGNHADLKKIRDISTELFIIGNNSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred cCHHHHHHHHHHhCCCEEEECc---CCCCCCCcHHHHHHhcCCCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 4788999999999999999843 3445444556666532589999999999999999999999999999766
No 288
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=96.36 E-value=0.021 Score=56.24 Aligned_cols=78 Identities=31% Similarity=0.307 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHcCCcEEEEE-e------cC-----------CcCCC------CHHHHHHHHhcCCCCcEEeccccCCHHH
Q 015424 198 DPVEIARSYEKGGAACLSIL-T------DE-----------KYFKG------SFENLEAVRSAGVKCPLLCKEFIVDAWQ 253 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVL-T------d~-----------~~F~G------s~edL~~Vr~a~v~lPVL~KDFIid~~Q 253 (407)
+..++|+..+++||++|.+. | |. ..+.| +++.+..+++. +++||+.-..|.++.+
T Consensus 167 ~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~-~~ipii~~GGI~~~~d 245 (296)
T cd04740 167 DIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKA-VEIPIIGVGGIASGED 245 (296)
T ss_pred hHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHh-cCCCEEEECCCCCHHH
Confidence 68899999999999999763 1 11 12233 24788888886 8999999999999999
Q ss_pred HHHHHHcCCCEEEEeccCCCHHH
Q 015424 254 IYYARTKGADAVLLIAAVLPDLD 276 (407)
Q Consensus 254 I~eAr~~GADaVLLiaaiL~~~~ 276 (407)
+.++..+|||+|.+..+++.+.+
T Consensus 246 a~~~l~~GAd~V~igra~l~~p~ 268 (296)
T cd04740 246 ALEFLMAGASAVQVGTANFVDPE 268 (296)
T ss_pred HHHHHHcCCCEEEEchhhhcChH
Confidence 99999999999999988776443
No 289
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=96.35 E-value=0.49 Score=47.49 Aligned_cols=178 Identities=12% Similarity=0.089 Sum_probs=116.4
Q ss_pred HHHHHHHHHHcCCcEEEEEecCC-cCCCCHHHHHH----HHh-cCCCCcEE-eccccCCHHHHHHHHHcCCCEEEEeccC
Q 015424 199 PVEIARSYEKGGAACLSILTDEK-YFKGSFENLEA----VRS-AGVKCPLL-CKEFIVDAWQIYYARTKGADAVLLIAAV 271 (407)
Q Consensus 199 p~~iA~ay~~~GA~aISVLTd~~-~F~Gs~edL~~----Vr~-a~v~lPVL-~KDFIid~~QI~eAr~~GADaVLLiaai 271 (407)
...+.++.++.++..|-=++... -|.|+++.+.. ..+ ..+++||- .-|-.-+...+..|..+|-+.|.++.+-
T Consensus 31 ~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~lHLDHg~~~e~i~~ai~~GftSVM~DgS~ 110 (286)
T PRK08610 31 TQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVAIHLDHGSSFEKCKEAIDAGFTSVMIDASH 110 (286)
T ss_pred HHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCCC
Confidence 33445555666655544333221 11233433222 222 21237874 6777778889999999999999999999
Q ss_pred CCHH----HHHHHHHHHHHcCCcEEEE-----------------eCCHHHHHHHhcccCCcEEEeecccccccccccccc
Q 015424 272 LPDL----DIRYMTKICKLLGLTALVE-----------------VHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTE 330 (407)
Q Consensus 272 L~~~----~L~~Li~~a~~LGL~aLVE-----------------Vht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~ 330 (407)
|+-+ .-++.+++||.+|+.+=.| -.+++|+.+..+..|+|.+.|.--+. =|.-+.
T Consensus 111 l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~----HG~Y~~ 186 (286)
T PRK08610 111 SPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGIDALAPALGSV----HGPYKG 186 (286)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCCCEEEeecccc----ccccCC
Confidence 9754 3567888899887766111 24788888777655999988864433 222234
Q ss_pred ccccCchhHHHHhhcccccccccCCceEEEeeCCC-CHHHHHHHHHcCCCEEEEccccc
Q 015424 331 TFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLF-TPDDIAYVQEAGVKAVLVGESIV 388 (407)
Q Consensus 331 Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~-t~eD~~~l~~~GadaVLVGeaLm 388 (407)
....|++...++.+.+ ++++|.=||=. ..++++++.++|+.-|=|++.|-
T Consensus 187 ~p~Ld~~~L~~I~~~~--------~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~T~l~ 237 (286)
T PRK08610 187 EPKLGFKEMEEIGLST--------GLPLVLHGGTGIPTKDIQKAIPFGTAKINVNTENQ 237 (286)
T ss_pred CCCCCHHHHHHHHHHH--------CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeccHHH
Confidence 5678888888876542 45555544443 44889999999999999999874
No 290
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=96.34 E-value=0.032 Score=55.82 Aligned_cols=80 Identities=23% Similarity=0.325 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHcCCcEEEEEe--cCCcCCC--CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHH-HcCCCEEEEeccC
Q 015424 197 FDPVEIARSYEKGGAACLSILT--DEKYFKG--SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYAR-TKGADAVLLIAAV 271 (407)
Q Consensus 197 ~dp~~iA~ay~~~GA~aISVLT--d~~~F~G--s~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr-~~GADaVLLiaai 271 (407)
.+..++|+.+++.|+++|.|-. -...+.| .++.+..|++. +++||+.-..|.++.++.++. ..|||+|.+.-.+
T Consensus 147 ~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~-~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~ 225 (319)
T TIGR00737 147 INAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQA-VRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGA 225 (319)
T ss_pred chHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHc-CCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhh
Confidence 3678999999999999998852 2233433 56777888886 899999999999999999987 6899999999888
Q ss_pred CCHHHH
Q 015424 272 LPDLDI 277 (407)
Q Consensus 272 L~~~~L 277 (407)
+.+..+
T Consensus 226 l~~P~l 231 (319)
T TIGR00737 226 LGNPWL 231 (319)
T ss_pred hhCChH
Confidence 876555
No 291
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=96.34 E-value=0.51 Score=47.31 Aligned_cols=140 Identities=16% Similarity=0.204 Sum_probs=103.1
Q ss_pred CCCcEE-eccccCCHHHHHHHHHcCCCEEEEeccCCCHH----HHHHHHHHHHHcCCcEEEE------------------
Q 015424 238 VKCPLL-CKEFIVDAWQIYYARTKGADAVLLIAAVLPDL----DIRYMTKICKLLGLTALVE------------------ 294 (407)
Q Consensus 238 v~lPVL-~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~----~L~~Li~~a~~LGL~aLVE------------------ 294 (407)
.++||- .-|-..+...+.+|..+|-+.|.++.+-|+-+ .-++++++||.+|..+=.|
T Consensus 73 ~~VPV~lHLDHg~~~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~ 152 (284)
T PRK09195 73 YHHPLALHLDHHEKFDDIAQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADA 152 (284)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccc
Confidence 578974 66777788889999999999999999999753 3567888899887665111
Q ss_pred -eCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHH
Q 015424 295 -VHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYV 373 (407)
Q Consensus 295 -Vht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l 373 (407)
..|.+|+.+..+..|+|.+.|..=+. =|.-+.+...|++..+++.+.+ +-..++=..||+ ..|+++++
T Consensus 153 ~~T~peea~~Fv~~TgvD~LAvaiGt~----HG~y~~~p~Ld~~~L~~I~~~~------~vPLVLHGgSG~-~~e~~~~a 221 (284)
T PRK09195 153 LYTDPAQAREFVEATGIDSLAVAIGTA----HGMYKGEPKLDFDRLENIRQWV------NIPLVLHGASGL-PTKDIQQT 221 (284)
T ss_pred cCCCHHHHHHHHHHHCcCEEeeccCcc----ccccCCCCcCCHHHHHHHHHHh------CCCeEEecCCCC-CHHHHHHH
Confidence 23677887777645999888863332 2222235678998888886652 112344457788 47889999
Q ss_pred HHcCCCEEEEccccc
Q 015424 374 QEAGVKAVLVGESIV 388 (407)
Q Consensus 374 ~~~GadaVLVGeaLm 388 (407)
.++|+.-|=|++.+.
T Consensus 222 i~~Gi~KiNi~T~l~ 236 (284)
T PRK09195 222 IKLGICKVNVATELK 236 (284)
T ss_pred HHcCCeEEEeCcHHH
Confidence 999999999999887
No 292
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.33 E-value=0.27 Score=50.63 Aligned_cols=141 Identities=13% Similarity=0.097 Sum_probs=99.0
Q ss_pred CCcE-EeccccCCHHHHHHHHHcCCCEEEEeccCC-------CH----HHHHHHHHHHHHcCCcEEEEe-----------
Q 015424 239 KCPL-LCKEFIVDAWQIYYARTKGADAVLLIAAVL-------PD----LDIRYMTKICKLLGLTALVEV----------- 295 (407)
Q Consensus 239 ~lPV-L~KDFIid~~QI~eAr~~GADaVLLiaaiL-------~~----~~L~~Li~~a~~LGL~aLVEV----------- 295 (407)
++|| |.-|-.-+..++.+|..+|-+.|.++.+-| +- ..-++.+++||.+|+.+=.|+
T Consensus 75 ~VPValHLDHg~~~e~i~~ai~~GftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaELG~vgg~e~~~~ 154 (347)
T PRK09196 75 HIPVVMHQDHGNSPATCQRAIQLGFTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCLGSLETGMG 154 (347)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcCCCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccc
Confidence 4787 466777788899999999999999999998 32 345678889998888773333
Q ss_pred ------------------CCHHHHHHHhcccCCcEEEeecccccccccccccc-cc---ccCchhHHHHhhccccccccc
Q 015424 296 ------------------HDEREMDRVLGIEGIELIGINNRNLAISIFSYRTE-TF---EVDNSNTKKLLEGERGEIIRQ 353 (407)
Q Consensus 296 ------------------ht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~-Tf---~vDl~~t~~L~~~~~~~~i~~ 353 (407)
.+.+|+.+..+..|+|.+.|..=+. ||. |..+ .. .+|+++.+++.+.+
T Consensus 155 g~~~~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGT~--HG~-Yk~~~~p~~~~LdfdrL~eI~~~v------- 224 (347)
T PRK09196 155 GEEDGHGAEGKLSHDQLLTDPEEAADFVKKTQVDALAIAIGTS--HGA-YKFTRKPTGDVLAIDRIKEIHARL------- 224 (347)
T ss_pred ccccCcccccccchhhcCCCHHHHHHHHHHhCcCeEhhhhccc--cCC-CCCCCCCChhhccHHHHHHHHhcC-------
Confidence 3577887777545999888864333 111 2110 23 27888888876652
Q ss_pred CCceEEE--eeCCC--------------------CHHHHHHHHHcCCCEEEEcccccC
Q 015424 354 KNIIVVG--ESGLF--------------------TPDDIAYVQEAGVKAVLVGESIVK 389 (407)
Q Consensus 354 ~~v~vVA--ESGI~--------------------t~eD~~~l~~~GadaVLVGeaLmk 389 (407)
+++++|. .||+. ..|+++++.++|+.-|=|++.|..
T Consensus 225 ~~vPLVLHGgSG~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~~ 282 (347)
T PRK09196 225 PNTHLVMHGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHGVRKVNIDTDLRL 282 (347)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCceEEeChHHHH
Confidence 1355554 44442 558899999999999999988754
No 293
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=96.33 E-value=0.019 Score=57.06 Aligned_cols=75 Identities=25% Similarity=0.214 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHcCCcEEEEE-----------------------ecCCcCCC------CHHHHHHHHhcCC--CCcEEecc
Q 015424 198 DPVEIARSYEKGGAACLSIL-----------------------TDEKYFKG------SFENLEAVRSAGV--KCPLLCKE 246 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVL-----------------------Td~~~F~G------s~edL~~Vr~a~v--~lPVL~KD 246 (407)
+..++|+..+++||++|.+. |....+.| +++.+..+++. + ++||+.-.
T Consensus 181 ~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~-~~~~ipIig~G 259 (299)
T cd02940 181 DIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARA-PEPGLPISGIG 259 (299)
T ss_pred hHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHh-cCCCCcEEEEC
Confidence 78899999999999999842 11223444 26788888886 7 89999988
Q ss_pred ccCCHHHHHHHHHcCCCEEEEeccCCC
Q 015424 247 FIVDAWQIYYARTKGADAVLLIAAVLP 273 (407)
Q Consensus 247 FIid~~QI~eAr~~GADaVLLiaaiL~ 273 (407)
.|.+..++.+...+|||+|.+..+++-
T Consensus 260 GI~~~~da~~~l~aGA~~V~i~ta~~~ 286 (299)
T cd02940 260 GIESWEDAAEFLLLGASVVQVCTAVMN 286 (299)
T ss_pred CCCCHHHHHHHHHcCCChheEceeecc
Confidence 899999999999999999999888663
No 294
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=96.29 E-value=0.022 Score=54.42 Aligned_cols=69 Identities=17% Similarity=0.113 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHcCCcEEEEEecC-CcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEE
Q 015424 198 DPVEIARSYEKGGAACLSILTDE-KYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLL 267 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~-~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLL 267 (407)
+..++|.+.+..|+..|++-.-. -...++.+.++.+|+. +++|+.....|.++.|+.++..+|||.|.+
T Consensus 135 ~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~-~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVV 204 (205)
T TIGR01769 135 IAAAYCLAAKYFGMKWVYLEAGSGASYPVNPETISLVKKA-SGIPLIVGGGIRSPEIAYEIVLAGADAIVT 204 (205)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHHh-hCCCEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 44555667788899999996633 3445889999999987 899999999999999999999999999976
No 295
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=96.27 E-value=0.17 Score=53.86 Aligned_cols=171 Identities=13% Similarity=0.138 Sum_probs=111.0
Q ss_pred CceEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEEe-cCCcCCCCHHHHHHHHhcCC--CCcEEeccccCCHH
Q 015424 176 LPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILT-DEKYFKGSFENLEAVRSAGV--KCPLLCKEFIVDAW 252 (407)
Q Consensus 176 ~~~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVLT-d~~~F~Gs~edL~~Vr~a~v--~lPVL~KDFIid~~ 252 (407)
++-.+.|| .+..++-++. +.||.-|.|+. |-+-|.=+++.-..+... . ++.++.--.|-++.
T Consensus 159 Gl~~lvEv-------------h~~~El~~al-~~~a~iiGiNnRdL~t~~vd~~~~~~l~~~-ip~~~~~vseSGI~t~~ 223 (454)
T PRK09427 159 NMGVLTEV-------------SNEEELERAI-ALGAKVIGINNRNLRDLSIDLNRTRELAPL-IPADVIVISESGIYTHA 223 (454)
T ss_pred CCcEEEEE-------------CCHHHHHHHH-hCCCCEEEEeCCCCccceECHHHHHHHHhh-CCCCcEEEEeCCCCCHH
Confidence 36788888 3555665554 46899999984 445566666666666543 2 34456666788999
Q ss_pred HHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeecccccccccccccccc
Q 015424 253 QIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETF 332 (407)
Q Consensus 253 QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf 332 (407)
++...+. |||+||++.+++..++....++.... +.--++-+.+.+++..|.++ |++++|+... ++..-
T Consensus 224 d~~~~~~-~~davLiG~~lm~~~d~~~~~~~L~~-~~vKICGit~~eda~~a~~~-GaD~lGfIf~---------~~SpR 291 (454)
T PRK09427 224 QVRELSP-FANGFLIGSSLMAEDDLELAVRKLIL-GENKVCGLTRPQDAKAAYDA-GAVYGGLIFV---------EKSPR 291 (454)
T ss_pred HHHHHHh-cCCEEEECHHHcCCCCHHHHHHHHhc-cccccCCCCCHHHHHHHHhC-CCCEEeeEeC---------CCCCC
Confidence 9988765 79999999999966554433322211 22235556899999999998 9999999621 11223
Q ss_pred ccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHH-HHHcCCCEE
Q 015424 333 EVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAY-VQEAGVKAV 381 (407)
Q Consensus 333 ~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~-l~~~GadaV 381 (407)
.++++.+.+|.+.++ +..|+.===.+++++.. +.++|.|.|
T Consensus 292 ~V~~~~a~~i~~~l~--------v~~VgVfv~~~~~~i~~i~~~~~lD~v 333 (454)
T PRK09427 292 YVSLEQAQEIIAAAP--------LRYVGVFRNADIEDIVDIAKQLSLAAV 333 (454)
T ss_pred CCCHHHHHHHHHhCC--------CCEEEEEeCCCHHHHHHHHHHcCCCEE
Confidence 378888888877532 11122211236777765 457788876
No 296
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=96.26 E-value=0.086 Score=51.48 Aligned_cols=126 Identities=21% Similarity=0.264 Sum_probs=87.4
Q ss_pred cccCCCcCCCCCCCCHHHHHHH---HHHcCCcEEEEEecCCcCCCC-----HHHHHHHHhc----C---CCCcEEeccc-
Q 015424 184 KKASPSRGILREDFDPVEIARS---YEKGGAACLSILTDEKYFKGS-----FENLEAVRSA----G---VKCPLLCKEF- 247 (407)
Q Consensus 184 KraSPSkG~i~~~~dp~~iA~a---y~~~GA~aISVLTd~~~F~Gs-----~edL~~Vr~a----~---v~lPVL~KDF- 247 (407)
+.-|-+-|.+. .+|..++.+ ....|++-|=| ++|+++ .+.|..+.++ . .=++++.-|+
T Consensus 53 ~pvSAtiGDlp--~~p~~~~~aa~~~a~~GvdyvKv----Gl~g~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~ 126 (235)
T PF04476_consen 53 KPVSATIGDLP--MKPGTASLAALGAAATGVDYVKV----GLFGCKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQ 126 (235)
T ss_pred CceEEEecCCC--CCchHHHHHHHHHHhcCCCEEEE----ecCCCCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchh
Confidence 44555667764 345444443 34468888888 566543 2344443221 0 1145666776
Q ss_pred ---cCCHHHHHH-HHHcCCCEEEEecc---------CCCHHHHHHHHHHHHHcCCcE-EEEeCCHHHHHHHhcccCCcEE
Q 015424 248 ---IVDAWQIYY-ARTKGADAVLLIAA---------VLPDLDIRYMTKICKLLGLTA-LVEVHDEREMDRVLGIEGIELI 313 (407)
Q Consensus 248 ---Iid~~QI~e-Ar~~GADaVLLiaa---------iL~~~~L~~Li~~a~~LGL~a-LVEVht~eElerAl~l~Ga~iI 313 (407)
-++|..+-+ +..+|+|+++|.++ .++.++|.+|++.++++||.+ |.--=..+++.+...+ +++++
T Consensus 127 r~~~~~p~~l~~~a~~aG~~gvMlDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~aLAGSL~~~di~~L~~l-~pD~l 205 (235)
T PF04476_consen 127 RVGSISPLDLPEIAAEAGFDGVMLDTADKDGGSLFDHLSEEELAEFVAQARAHGLMCALAGSLRFEDIPRLKRL-GPDIL 205 (235)
T ss_pred hhcCCCHHHHHHHHHHcCCCEEEEecccCCCCchhhcCCHHHHHHHHHHHHHccchhhccccCChhHHHHHHhc-CCCEE
Confidence 468888755 68999999999987 347789999999999999986 5555578889898998 99999
Q ss_pred Eee
Q 015424 314 GIN 316 (407)
Q Consensus 314 GIN 316 (407)
|+.
T Consensus 206 GfR 208 (235)
T PF04476_consen 206 GFR 208 (235)
T ss_pred Eec
Confidence 984
No 297
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=96.23 E-value=0.4 Score=49.38 Aligned_cols=141 Identities=15% Similarity=0.141 Sum_probs=99.2
Q ss_pred CCcE-EeccccCCHHHHHHHHHcCCCEEEEeccCCC-------H----HHHHHHHHHHHHcCCcEEEEe-----------
Q 015424 239 KCPL-LCKEFIVDAWQIYYARTKGADAVLLIAAVLP-------D----LDIRYMTKICKLLGLTALVEV----------- 295 (407)
Q Consensus 239 ~lPV-L~KDFIid~~QI~eAr~~GADaVLLiaaiL~-------~----~~L~~Li~~a~~LGL~aLVEV----------- 295 (407)
++|| |.-|-..+..++.+|..+|-+.|.++++-|+ - ..-++++++||..|+.+=.|+
T Consensus 75 ~VPVaLHLDHg~~~e~i~~Ai~~GFtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVEaELG~igg~e~~~~ 154 (347)
T PRK13399 75 DIPICLHQDHGNSPATCQSAIRSGFTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELGCLGSLETGEA 154 (347)
T ss_pred CCcEEEECCCCCCHHHHHHHHhcCCCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEEEEeeeccCcccccc
Confidence 4787 4677778888999999999999999999996 1 345678889998888774444
Q ss_pred ------------------CCHHHHHHHhcccCCcEEEeecccccccccccccc-ccc---cCchhHHHHhhccccccccc
Q 015424 296 ------------------HDEREMDRVLGIEGIELIGINNRNLAISIFSYRTE-TFE---VDNSNTKKLLEGERGEIIRQ 353 (407)
Q Consensus 296 ------------------ht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~-Tf~---vDl~~t~~L~~~~~~~~i~~ 353 (407)
.|.+|+.+..+..|+|.+.|..=+. ||. |..+ ... +|++..+++.+.+
T Consensus 155 g~ed~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~--HG~-Yk~~~~p~~~~L~~drl~eI~~~v------- 224 (347)
T PRK13399 155 GEEDGVGAEGKLSHDQMLTDPDQAVDFVQRTGVDALAIAIGTS--HGA-YKFTRKPDGDILAIDRIEEIHARL------- 224 (347)
T ss_pred cccCCccccccccccccCCCHHHHHHHHHHHCcCEEhhhhccc--cCC-cCCCCCCChhhccHHHHHHHHhhc-------
Confidence 2467777766545899888754333 111 2110 123 7777887776642
Q ss_pred CCceEEEeeCCCC----------------------HHHHHHHHHcCCCEEEEcccccC
Q 015424 354 KNIIVVGESGLFT----------------------PDDIAYVQEAGVKAVLVGESIVK 389 (407)
Q Consensus 354 ~~v~vVAESGI~t----------------------~eD~~~l~~~GadaVLVGeaLmk 389 (407)
.++++|.=||=.. .|+++++.++|+.-|=|++.+..
T Consensus 225 ~~vPLVLHGgSGvp~~~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KINi~Tdl~~ 282 (347)
T PRK13399 225 PNTHLVMHGSSSVPQELQEIINAYGGKMKETYGVPVEEIQRGIKHGVRKVNIDTDIRL 282 (347)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCeEEEeChHHHH
Confidence 2456665555443 48899999999999999988754
No 298
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=96.23 E-value=0.09 Score=53.50 Aligned_cols=45 Identities=11% Similarity=0.088 Sum_probs=41.0
Q ss_pred CceEEEeeCCCCHHHHHHHHHcC-CCEEEEcccccCCCChHHHHHh
Q 015424 355 NIIVVGESGLFTPDDIAYVQEAG-VKAVLVGESIVKQDDPGKGITG 399 (407)
Q Consensus 355 ~v~vVAESGI~t~eD~~~l~~~G-adaVLVGeaLmk~~dp~~~i~~ 399 (407)
+++|++-|||.+++++.++.+.| +|.|.+|.+++..|+....+++
T Consensus 285 ~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l~~k~~~ 330 (343)
T cd04734 285 DLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHLVAKARE 330 (343)
T ss_pred CCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCccHHHHHHc
Confidence 57899999999999999999876 9999999999999998877765
No 299
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=96.22 E-value=0.036 Score=55.27 Aligned_cols=90 Identities=21% Similarity=0.286 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHc-C--CcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccc
Q 015424 276 DIRYMTKICKLL-G--LTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIR 352 (407)
Q Consensus 276 ~L~~Li~~a~~L-G--L~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~ 352 (407)
.+.+.++.++.. + ..+=|||.|.+|+++|+++ |||+|...|... +..++.++.+ + .
T Consensus 173 ~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~a-gaDiImLDNm~~----------------e~~~~av~~l-~--~- 231 (280)
T COG0157 173 SITEAVRRARAAAPFTKKIEVEVESLEEAEEALEA-GADIIMLDNMSP----------------EELKEAVKLL-G--L- 231 (280)
T ss_pred cHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHc-CCCEEEecCCCH----------------HHHHHHHHHh-c--c-
Confidence 356667777764 3 3367999999999999997 999999966544 2334443331 0 1
Q ss_pred cCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccc
Q 015424 353 QKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESI 387 (407)
Q Consensus 353 ~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaL 387 (407)
...+.+=+.||| |++.+......|+|-+-+|.--
T Consensus 232 ~~~~~lEaSGgI-t~~ni~~yA~tGVD~IS~galt 265 (280)
T COG0157 232 AGRALLEASGGI-TLENIREYAETGVDVISVGALT 265 (280)
T ss_pred CCceEEEEeCCC-CHHHHHHHhhcCCCEEEeCccc
Confidence 246788888999 9999999999999999988533
No 300
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=96.21 E-value=0.028 Score=54.29 Aligned_cols=93 Identities=14% Similarity=0.203 Sum_probs=70.8
Q ss_pred cCCCCCCCCHHHHHHHHHHcCCcEEEEEec--CCcCCC-CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHH---cCCC
Q 015424 190 RGILREDFDPVEIARSYEKGGAACLSILTD--EKYFKG-SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYART---KGAD 263 (407)
Q Consensus 190 kG~i~~~~dp~~iA~ay~~~GA~aISVLTd--~~~F~G-s~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~---~GAD 263 (407)
.|+-....++.++++.+++.|+..|-+..- .+.++| +++.++.+++. +++||+.-..|.+..++.+... .|||
T Consensus 139 ~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~-~~ipviasGGi~s~~D~~~l~~~~~~Gvd 217 (241)
T PRK14024 139 RGWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTGPNLELLREVCAR-TDAPVVASGGVSSLDDLRALAELVPLGVE 217 (241)
T ss_pred CCeeecCccHHHHHHHHHhcCCCEEEEEeecCCCCccCCCHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHhhhccCCcc
Confidence 477666779999999999999998877632 223444 56677788876 8999999999999999988753 5999
Q ss_pred EEEEeccCCCH-HHHHHHHHH
Q 015424 264 AVLLIAAVLPD-LDIRYMTKI 283 (407)
Q Consensus 264 aVLLiaaiL~~-~~L~~Li~~ 283 (407)
+|++..++++. -.++++.+.
T Consensus 218 gV~igra~~~g~~~~~~~~~~ 238 (241)
T PRK14024 218 GAIVGKALYAGAFTLPEALAV 238 (241)
T ss_pred EEEEeHHHHcCCCCHHHHHHH
Confidence 99998887744 345554443
No 301
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=96.18 E-value=0.61 Score=47.62 Aligned_cols=141 Identities=10% Similarity=0.051 Sum_probs=101.6
Q ss_pred CCcE-EeccccCCHHHHHHHHHcCCCEEEEeccCCCHH----HHHHHHHHHHHcCCcEEEE-----------------eC
Q 015424 239 KCPL-LCKEFIVDAWQIYYARTKGADAVLLIAAVLPDL----DIRYMTKICKLLGLTALVE-----------------VH 296 (407)
Q Consensus 239 ~lPV-L~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~----~L~~Li~~a~~LGL~aLVE-----------------Vh 296 (407)
++|| |.-|-.-|...+.+|..+|-+.|.++++-|+.+ .-++++++||.+|+.+=.| -.
T Consensus 85 ~VPV~lHLDHg~~~e~i~~ai~~GftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~~~~~T 164 (321)
T PRK07084 85 PIPIVLHLDHGDSFELCKDCIDSGFSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAEHHTYT 164 (321)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCcccccC
Confidence 6787 467777888899999999999999999999764 3567888999888766222 23
Q ss_pred CHHHHHHHhcccCCcEEEeecccccccccccccc----ccccCchhHHHHhhcccccccccCCceEEEeeCCC-------
Q 015424 297 DEREMDRVLGIEGIELIGINNRNLAISIFSYRTE----TFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLF------- 365 (407)
Q Consensus 297 t~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~----Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~------- 365 (407)
|.+|+.+..+..|+|.+.+..=+. || .|... ...+|++...++.+.+ .++++|.=||=.
T Consensus 165 ~peeA~~Fv~~TgvD~LAvaiGt~--HG-~Y~~~~~~~~p~Ld~d~L~~I~~~~-------~~vPLVLHGgSg~~~~~~~ 234 (321)
T PRK07084 165 QPEEVEDFVKKTGVDSLAISIGTS--HG-AYKFKPGQCPPPLRFDILEEIEKRI-------PGFPIVLHGSSSVPQEYVK 234 (321)
T ss_pred CHHHHHHHHHHhCCCEEeeccccc--cc-cccCCCCCCCCccCHHHHHHHHHhc-------CCCCEEEeCCCCCcHHHHH
Confidence 678887777655999988865444 22 12211 3557888888876652 135555544332
Q ss_pred ---------------CHHHHHHHHHcCCCEEEEcccccC
Q 015424 366 ---------------TPDDIAYVQEAGVKAVLVGESIVK 389 (407)
Q Consensus 366 ---------------t~eD~~~l~~~GadaVLVGeaLmk 389 (407)
..||++++.++|+.-|=|++.|..
T Consensus 235 ~~~~~g~~~~~~~Gi~~e~~~kai~~GI~KINi~Tdl~~ 273 (321)
T PRK07084 235 TINEYGGKLKDAIGIPEEQLRKAAKSAVCKINIDSDGRL 273 (321)
T ss_pred HHHHhcCccccCCCCCHHHHHHHHHcCCceeccchHHHH
Confidence 458999999999999999988754
No 302
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=96.16 E-value=0.014 Score=57.02 Aligned_cols=162 Identities=15% Similarity=0.081 Sum_probs=97.5
Q ss_pred CHHHHHHHHhc--CCCCcEEeccc-----c--CCHHHHHHHHHcCCCEEEEeccC------CCHHHHHHHHHHHHHcCCc
Q 015424 226 SFENLEAVRSA--GVKCPLLCKEF-----I--VDAWQIYYARTKGADAVLLIAAV------LPDLDIRYMTKICKLLGLT 290 (407)
Q Consensus 226 s~edL~~Vr~a--~v~lPVL~KDF-----I--id~~QI~eAr~~GADaVLLiaai------L~~~~L~~Li~~a~~LGL~ 290 (407)
++-+|..+++. +.+++|-..|. . +=+.-....+.+|++.|+++++= -+++.+..=++.|.+.||.
T Consensus 40 p~~~L~~~~~~~~~~~i~igAQnv~~~~~Ga~TGevS~~mL~d~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~ 119 (244)
T PF00121_consen 40 PFTYLSSVSKILKGSNIKIGAQNVSPEDSGAFTGEVSAEMLKDLGCKYVIIGHSERRQYFGETDEIINKKVKAALENGLT 119 (244)
T ss_dssp SGGGHHHHHHHHTTTTSEEEESS-BSSSSBS-TTHHBHHHHHHTTESEEEESCHHHHHHST-BHHHHHHHHHHHHHTT-E
T ss_pred cchhHHHHHhhccCCeEEEecccccchhhcccHHHhHHHHHHHhhCCEEEeccccccCccccccHHHHHHHHHHHHCCCE
Confidence 35677777653 24778877662 1 11112334577899999999982 2677888888889999999
Q ss_pred EEEEeCCHH--------------HHHHHhccc-----CCcEEEeeccccccccccccccccccCchhHHHHhhccccc--
Q 015424 291 ALVEVHDER--------------EMDRVLGIE-----GIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGE-- 349 (407)
Q Consensus 291 aLVEVht~e--------------ElerAl~l~-----Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~-- 349 (407)
++++|-... +++.++.-- ..-+|.....-.||||..-+. +...+....++.-
T Consensus 120 pIvCvGE~~~~~~~~~~~~~l~~Ql~~~l~~i~~~~~~~~iIAYEPvWAIGtG~~as~-------~~~~~~~~~Ir~~l~ 192 (244)
T PF00121_consen 120 PIVCVGETLEERESGKTKEVLKRQLKSILKGIDKEELKNIIIAYEPVWAIGTGKTASP-------EQIQEVHAFIREILA 192 (244)
T ss_dssp EEEEESSBHHHHHTTCHHHHHHHHHHHHHTTSSGGGGTCEEEEEEEGGGTSSSS-CCH-------HHHHHHHHHHHHHHH
T ss_pred EEEEeccchhhhhcCcHHHHHHHHHHHHHhccccccccceEEEEcccccccCCCCCCH-------HHHHHHHHHHHHHHH
Confidence 999999721 222333210 235777777666665443322 2222222221110
Q ss_pred -cc---ccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChH
Q 015424 350 -II---RQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPG 394 (407)
Q Consensus 350 -~i---~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~ 394 (407)
.+ ...++.++-.|+++.-.....+...++||+|||.+-++..+..
T Consensus 193 ~~~~~~~~~~~~ILYGGSV~~~N~~~l~~~~~iDG~LVG~asl~~~~F~ 241 (244)
T PF00121_consen 193 ELYGEEVANNIRILYGGSVNPENAAELLSQPDIDGVLVGGASLKAESFL 241 (244)
T ss_dssp HHTHHHHHHHSEEEEESSESTTTHHHHHTSTT-SEEEESGGGGSTHHHH
T ss_pred HhccccccCceeEEECCcCCcccHHHHhcCCCCCEEEEchhhhcccchh
Confidence 00 0135788899999555555566678999999999998876543
No 303
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=96.16 E-value=0.024 Score=57.18 Aligned_cols=73 Identities=19% Similarity=0.322 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCC-----------------C------CHHHHHHHHhcCCCCcEEeccccCCHHHH
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFK-----------------G------SFENLEAVRSAGVKCPLLCKEFIVDAWQI 254 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~-----------------G------s~edL~~Vr~a~v~lPVL~KDFIid~~QI 254 (407)
+..++|+.++++||++|.+..- +++ | +++.+..+++. +++||+.-..|.+..++
T Consensus 178 ~~~~~a~~l~~~G~dgI~~~n~--~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~-~~ipIig~GGI~s~~Da 254 (334)
T PRK07565 178 NLANMAKRLDAAGADGLVLFNR--FYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGR-VGADLAATTGVHDAEDV 254 (334)
T ss_pred hHHHHHHHHHHcCCCeEEEECC--cCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhh-cCCCEEEECCCCCHHHH
Confidence 6889999999999999987421 111 1 12445566665 78999999999999999
Q ss_pred HHHHHcCCCEEEEeccCCC
Q 015424 255 YYARTKGADAVLLIAAVLP 273 (407)
Q Consensus 255 ~eAr~~GADaVLLiaaiL~ 273 (407)
.+...+|||+|-+...++.
T Consensus 255 ~e~l~aGA~~V~v~t~~~~ 273 (334)
T PRK07565 255 IKMLLAGADVVMIASALLR 273 (334)
T ss_pred HHHHHcCCCceeeehHHhh
Confidence 9999999999999988775
No 304
>PLN02826 dihydroorotate dehydrogenase
Probab=96.16 E-value=0.096 Score=54.90 Aligned_cols=39 Identities=21% Similarity=0.177 Sum_probs=35.3
Q ss_pred CCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccC-CCC
Q 015424 354 KNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK-QDD 392 (407)
Q Consensus 354 ~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk-~~d 392 (407)
.++.+|+-|||.|.+|+.+...+||++|-||++++. ++.
T Consensus 340 ~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~~Gp~ 379 (409)
T PLN02826 340 GKIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAYEGPA 379 (409)
T ss_pred CCCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHhcCHH
Confidence 358999999999999999999999999999999887 344
No 305
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.15 E-value=0.56 Score=47.00 Aligned_cols=142 Identities=19% Similarity=0.229 Sum_probs=102.6
Q ss_pred CCCcEE-eccccCCHHHHHHHHHcCCCEEEEeccCCCHH----HHHHHHHHHHHcCCcEEEE------------------
Q 015424 238 VKCPLL-CKEFIVDAWQIYYARTKGADAVLLIAAVLPDL----DIRYMTKICKLLGLTALVE------------------ 294 (407)
Q Consensus 238 v~lPVL-~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~----~L~~Li~~a~~LGL~aLVE------------------ 294 (407)
.++||- .-|-..+...|.+|..+|-+.|..+.+-|+-+ .-++++++||.+|+.+=.|
T Consensus 73 ~~VPValHLDH~~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~ 152 (284)
T PRK12857 73 ASVPVALHLDHGTDFEQVMKCIRNGFTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREA 152 (284)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchh
Confidence 478874 66776777889999999999999999999753 3567888999887766222
Q ss_pred -eCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHH
Q 015424 295 -VHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYV 373 (407)
Q Consensus 295 -Vht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l 373 (407)
-.+++|+.+..+..|+|.+.|.-=+. =|.-+.....|++..++|.+.+ +-..++=..||+ ..++++++
T Consensus 153 ~~T~pe~a~~Fv~~TgvD~LAvaiGt~----HG~y~~~p~Ld~~~L~~i~~~~------~vPLVlHGgSG~-~~e~~~~a 221 (284)
T PRK12857 153 AMTDPEEARRFVEETGVDALAIAIGTA----HGPYKGEPKLDFDRLAKIKELV------NIPIVLHGSSGV-PDEAIRKA 221 (284)
T ss_pred hcCCHHHHHHHHHHHCCCEEeeccCcc----ccccCCCCcCCHHHHHHHHHHh------CCCEEEeCCCCC-CHHHHHHH
Confidence 23667777776545899888863332 2222235678998888887652 112344456777 67889999
Q ss_pred HHcCCCEEEEcccccCC
Q 015424 374 QEAGVKAVLVGESIVKQ 390 (407)
Q Consensus 374 ~~~GadaVLVGeaLmk~ 390 (407)
.++|+.-|=|++.+...
T Consensus 222 i~~Gi~KiNi~T~~~~a 238 (284)
T PRK12857 222 ISLGVRKVNIDTNIREA 238 (284)
T ss_pred HHcCCeEEEeCcHHHHH
Confidence 99999999999987643
No 306
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=96.14 E-value=0.015 Score=56.73 Aligned_cols=73 Identities=29% Similarity=0.317 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcC-CC--CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCC
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYF-KG--SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F-~G--s~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (407)
||. +|+.+++.|+.++..+.-|=-- +| +..+|+.+++. .++||+.--.|=.|-+..+|.++|||+||+.+++-
T Consensus 133 D~v-~akrL~d~GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~-~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA 208 (247)
T PF05690_consen 133 DPV-LAKRLEDAGCAAVMPLGSPIGSGRGIQNPYNLRIIIER-ADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIA 208 (247)
T ss_dssp -HH-HHHHHHHTT-SEBEEBSSSTTT---SSTHHHHHHHHHH-GSSSBEEES---SHHHHHHHHHTT-SEEEESHHHH
T ss_pred CHH-HHHHHHHCCCCEEEecccccccCcCCCCHHHHHHHHHh-cCCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHh
Confidence 665 8999999999999999766311 11 57889999976 79999998899999999999999999999988865
No 307
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=96.12 E-value=0.007 Score=61.54 Aligned_cols=72 Identities=22% Similarity=0.163 Sum_probs=55.1
Q ss_pred HHHHHHHHHcCCcEEEEE--------ecCCcCCC----CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEE
Q 015424 200 VEIARSYEKGGAACLSIL--------TDEKYFKG----SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLL 267 (407)
Q Consensus 200 ~~iA~ay~~~GA~aISVL--------Td~~~F~G----s~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLL 267 (407)
.+-|+...+.||++|-|- |......| .+.-+..+++. .++||++-..|.++.+|..|.++|||+|.+
T Consensus 151 ~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~-~~ipVIAdGGI~~~~Di~KaLa~GA~aV~v 229 (326)
T PRK05458 151 PEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKA-ARKPIIADGGIRTHGDIAKSIRFGATMVMI 229 (326)
T ss_pred HHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHH-cCCCEEEeCCCCCHHHHHHHHHhCCCEEEe
Confidence 357788888999997653 22222222 23346677765 789999999999999999999999999999
Q ss_pred eccCC
Q 015424 268 IAAVL 272 (407)
Q Consensus 268 iaaiL 272 (407)
...++
T Consensus 230 G~~~~ 234 (326)
T PRK05458 230 GSLFA 234 (326)
T ss_pred chhhc
Confidence 88777
No 308
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.08 E-value=0.03 Score=54.09 Aligned_cols=92 Identities=18% Similarity=0.105 Sum_probs=65.3
Q ss_pred CCHHHHHHHhcc-cCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHH
Q 015424 296 HDEREMDRVLGI-EGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQ 374 (407)
Q Consensus 296 ht~eElerAl~l-~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~ 374 (407)
.|..|+-+.... .||+-+-|- ||-+ .......+++...++.+. .++++-..|||++.||++++.
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~iv--DLd~-----a~~~~~~n~~~I~~i~~~--------~~~pi~vGGGIrs~e~v~~~l 95 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIV--DLIG-----AKAQHAREFDYIKSLRRL--------TTKDIEVGGGIRTKSQIMDYF 95 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEE--ECcc-----cccCCcchHHHHHHHHhh--------cCCeEEEcCCcCCHHHHHHHH
Confidence 466666555543 478877764 4400 002233566666677653 356899999999999999999
Q ss_pred HcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 375 EAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 375 ~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
++||+.|+||++..+.++..+.+.+-++
T Consensus 96 ~~Ga~kvvigt~a~~~~~~l~~~~~~fg 123 (234)
T PRK13587 96 AAGINYCIVGTKGIQDTDWLKEMAHTFP 123 (234)
T ss_pred HCCCCEEEECchHhcCHHHHHHHHHHcC
Confidence 9999999999999998876666666554
No 309
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.03 E-value=0.092 Score=56.07 Aligned_cols=118 Identities=21% Similarity=0.197 Sum_probs=87.9
Q ss_pred CCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEec-------
Q 015424 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA------- 269 (407)
Q Consensus 197 ~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLia------- 269 (407)
.+..+.++.+.+.|++.|.|-+-.++-..-.+.++.||+...+++|++.|. .+..+...+..+|||+|-.+.
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv-~t~~~a~~l~~aGad~v~vgig~gsict 304 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNV-VTAEGTRDLVEAGADIVKVGVGPGAMCT 304 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeecc-CCHHHHHHHHHcCCCEEEECccCCcccc
Confidence 356788999999999998886655554445567888887645899999994 666778888899999997321
Q ss_pred -cCC---CHHHHHHHHHHHH---HcCCcEEEE--eCCHHHHHHHhcccCCcEEEee
Q 015424 270 -AVL---PDLDIRYMTKICK---LLGLTALVE--VHDEREMDRVLGIEGIELIGIN 316 (407)
Q Consensus 270 -aiL---~~~~L~~Li~~a~---~LGL~aLVE--Vht~eElerAl~l~Ga~iIGIN 316 (407)
+.. ...++..+.+.++ .+|..++.| +++..++.+|+.+ ||+.+.+-
T Consensus 305 t~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~-ga~~v~~g 359 (479)
T PRK07807 305 TRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVRHPRDVALALAA-GASNVMIG 359 (479)
T ss_pred cccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHc-CCCeeecc
Confidence 111 2245655555544 789999998 6799999999998 99877764
No 310
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=96.03 E-value=0.49 Score=48.58 Aligned_cols=196 Identities=17% Similarity=0.145 Sum_probs=116.4
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCC-CH----HHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEecc--
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKG-SF----ENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA-- 270 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~G-s~----edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa-- 270 (407)
...+-|+..++.||.-..+++--.- .| .+ +.++.|++. +.+++.+-=...++.|..+.+.+|+|+......
T Consensus 88 eIle~Ak~ak~~Ga~r~c~~aagr~-~~~~~~~i~~~v~~Vk~~-~~le~c~slG~l~~eq~~~L~~aGvd~ynhNLeTs 165 (335)
T COG0502 88 EILEAAKKAKAAGATRFCMGAAGRG-PGRDMEEVVEAIKAVKEE-LGLEVCASLGMLTEEQAEKLADAGVDRYNHNLETS 165 (335)
T ss_pred HHHHHHHHHHHcCCceEEEEEeccC-CCccHHHHHHHHHHHHHh-cCcHHhhccCCCCHHHHHHHHHcChhheecccccC
Confidence 4777899999999877777764332 22 22 233344444 678888766689999999999999999988433
Q ss_pred ------CC---CHHHHHHHHHHHHHcCCcE----EEEeC-CHHH---H-HHHhcccCCcEEEeecccccccccccccccc
Q 015424 271 ------VL---PDLDIRYMTKICKLLGLTA----LVEVH-DERE---M-DRVLGIEGIELIGINNRNLAISIFSYRTETF 332 (407)
Q Consensus 271 ------iL---~~~~L~~Li~~a~~LGL~a----LVEVh-t~eE---l-erAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf 332 (407)
+. +-++--..++.++++||++ ++-.. +.+| + ....++..++-|.||.-+- ++|+++-. .-
T Consensus 166 ~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~pdsVPIn~l~P-~~GTPle~-~~ 243 (335)
T COG0502 166 PEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPTPDSVPINFLNP-IPGTPLEN-AK 243 (335)
T ss_pred HHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCCCCeeeeeeecC-CCCCcccc-CC
Confidence 11 3344445667788899987 44333 3333 2 2223442289999987654 34444431 22
Q ss_pred ccCchhHHHHhhcccccccccCCceEEEeeCCCC--HHHHHHHHHcCCCEEEEcc-cccCCCChHHHHHhh
Q 015424 333 EVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFT--PDDIAYVQEAGVKAVLVGE-SIVKQDDPGKGITGL 400 (407)
Q Consensus 333 ~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t--~eD~~~l~~~GadaVLVGe-aLmk~~dp~~~i~~L 400 (407)
.+++--+.+.+...| .+-|+. .+.+.+|..+ ++-......+|++++++|. -++...-+...-.++
T Consensus 244 ~~~~~e~lk~IA~~R--i~~P~~-~Ir~s~gr~~~~~~~q~~~~~aGansi~~g~~~ltt~~~~~e~D~~~ 311 (335)
T COG0502 244 PLDPFEFLKTIAVAR--IIMPKS-MIRLSAGRETMLPELQALAFMAGANSIFVGDKYLTTPGPDEDKDLEL 311 (335)
T ss_pred CCCHHHHHHHHHHHH--HHCCcc-eeEccCCcccccHHHHHHHHHhccceeeecceEeecCCCCchhHHHH
Confidence 244433333333221 123444 4444455533 3445667789999999999 666555443333333
No 311
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=96.00 E-value=0.03 Score=56.42 Aligned_cols=79 Identities=20% Similarity=0.301 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHcCCcEEEEEe--cCCcCCC---CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHH-HcCCCEEEEeccC
Q 015424 198 DPVEIARSYEKGGAACLSILT--DEKYFKG---SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYAR-TKGADAVLLIAAV 271 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLT--d~~~F~G---s~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr-~~GADaVLLiaai 271 (407)
+..++|+.++++|+++|.|-. -...|.| .++.+..+++. +++||+.-+-|.++.++.+.. ..|||+|.+.-.+
T Consensus 149 ~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~-~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~ 227 (312)
T PRK10550 149 RKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQR-LTIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGA 227 (312)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhh-cCCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHh
Confidence 467999999999999999963 2334555 47888999987 899999988899999999876 5799999999889
Q ss_pred CCHHHH
Q 015424 272 LPDLDI 277 (407)
Q Consensus 272 L~~~~L 277 (407)
|.+..+
T Consensus 228 l~nP~l 233 (312)
T PRK10550 228 LNIPNL 233 (312)
T ss_pred HhCcHH
Confidence 977666
No 312
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=95.99 E-value=0.065 Score=50.60 Aligned_cols=73 Identities=26% Similarity=0.220 Sum_probs=57.7
Q ss_pred HHHHHHHcCCcEEEEE----ecC--CcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCCHH
Q 015424 202 IARSYEKGGAACLSIL----TDE--KYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDL 275 (407)
Q Consensus 202 iA~ay~~~GA~aISVL----Td~--~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~ 275 (407)
.++.+.+.|++.|.+. |.. ..+...++.++.+++. +++||++-..|.++.++.++..+|||+|+++.++....
T Consensus 131 e~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~-~~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~~~ 209 (221)
T PRK01130 131 EGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKA-VGCPVIAEGRINTPEQAKKALELGAHAVVVGGAITRPE 209 (221)
T ss_pred HHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHh-CCCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcCCH
Confidence 3577888899988652 221 2344457888999986 79999998888899999999999999999998887554
No 313
>PRK15492 triosephosphate isomerase; Provisional
Probab=95.98 E-value=0.049 Score=53.80 Aligned_cols=132 Identities=14% Similarity=0.107 Sum_probs=77.9
Q ss_pred HHHcCCCEEEEeccCC------CHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHH--------------h-cccCCc----
Q 015424 257 ARTKGADAVLLIAAVL------PDLDIRYMTKICKLLGLTALVEVHDEREMDRV--------------L-GIEGIE---- 311 (407)
Q Consensus 257 Ar~~GADaVLLiaaiL------~~~~L~~Li~~a~~LGL~aLVEVht~eElerA--------------l-~l~Ga~---- 311 (407)
.+++|++.|+|+++=. +++.+..-++.|.+.||.++++|-...|-..+ + .+ +++
T Consensus 90 Lkd~G~~~viiGHSERR~~f~Etd~~v~~Kv~~a~~~gl~pIvCiGE~~e~r~~g~~~~v~~~Ql~~~l~~~-~~~~~~~ 168 (260)
T PRK15492 90 LKEIGTQLVMIGHSERRHKFGETDQEENAKVLAALKHDFTTLLCVGETLEQKNYGISDEILRTQLKIGLHGI-NPDQLAK 168 (260)
T ss_pred HHHcCCCEEEECccccccccCcchHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCCHHHHHHHHHHHHHhcC-CHhhcCc
Confidence 4667999999999822 45556667778889999999999975443332 2 11 111
Q ss_pred -EEEeeccccccc-cccccccccccCchhHHHH-hhcccccccccCCceEEEeeCCCCHHHHHHHHHc-CCCEEEEcccc
Q 015424 312 -LIGINNRNLAIS-IFSYRTETFEVDNSNTKKL-LEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEA-GVKAVLVGESI 387 (407)
Q Consensus 312 -iIGINnRdL~~~-~~~~t~~Tf~vDl~~t~~L-~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~-GadaVLVGeaL 387 (407)
+|.....-.||| +..-++...+-......+. .+.. +.. ..++.++-.|+| +++.+..+... .+||+|||.+=
T Consensus 169 iiIAYEPvWAIGtgg~~as~e~~~~~~~~Ir~~l~~~~-~~~--~~~irILYGGSV-~~~N~~~l~~~~diDG~LvG~aS 244 (260)
T PRK15492 169 LRIAYEPVWAIGEAGIPASADYADEKHAVIKQCLIELF-GDA--GDDIPVFYGGSV-NAENANELFGQPHIDGLFIGRSA 244 (260)
T ss_pred eEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHh-ccc--cCceeEEEcCcc-CHHHHHHHhcCCCCCEEEeehhh
Confidence 366655555554 2211111110011111111 1111 111 235788888888 88888887654 69999999987
Q ss_pred cCCCCh
Q 015424 388 VKQDDP 393 (407)
Q Consensus 388 mk~~dp 393 (407)
.+..+-
T Consensus 245 l~~~~F 250 (260)
T PRK15492 245 WDADKF 250 (260)
T ss_pred cCHHHH
Confidence 765543
No 314
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=95.97 E-value=0.68 Score=47.77 Aligned_cols=141 Identities=10% Similarity=0.066 Sum_probs=98.1
Q ss_pred CCcE-EeccccCCHHHHHHHHHcCCCEEEEeccCC-------CH----HHHHHHHHHHHHcCCcEEEE------------
Q 015424 239 KCPL-LCKEFIVDAWQIYYARTKGADAVLLIAAVL-------PD----LDIRYMTKICKLLGLTALVE------------ 294 (407)
Q Consensus 239 ~lPV-L~KDFIid~~QI~eAr~~GADaVLLiaaiL-------~~----~~L~~Li~~a~~LGL~aLVE------------ 294 (407)
++|| |.-|-..+..++.+|..+|-+.|.++++.| +- ..-++++++||..|+.+=.|
T Consensus 73 ~VPValHLDHg~~~e~i~~Ai~~GFtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG~igg~e~~~~ 152 (347)
T TIGR01521 73 HIPVVMHQDHGNSPATCQRAIQLGFTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCLGSLETGMG 152 (347)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcCCCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeccccccccc
Confidence 3887 467777888999999999999999999988 22 34567888999877665221
Q ss_pred -----------------eCCHHHHHHHhcccCCcEEEeecccccccccccccc-cc---ccCchhHHHHhhccccccccc
Q 015424 295 -----------------VHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTE-TF---EVDNSNTKKLLEGERGEIIRQ 353 (407)
Q Consensus 295 -----------------Vht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~-Tf---~vDl~~t~~L~~~~~~~~i~~ 353 (407)
..+.+|+.+..+..|+|.+.|..=+. ||. |..+ .. .+|++..+++.+. +
T Consensus 153 g~~d~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~--HG~-Yk~~~~p~~~~Ld~~rL~eI~~~-----v-- 222 (347)
T TIGR01521 153 EAEDGHGFEGVLDHSQLLTDPEEAADFVKKTKVDALAVAIGTS--HGA-YKFTRKPTGEVLAIQRIEEIHAR-----L-- 222 (347)
T ss_pred ccccCcccccccchhhcCCCHHHHHHHHHHHCcCEEehhcccc--cCC-cCCCCCCChhhcCHHHHHHHHcc-----C--
Confidence 23557777766545899888764433 111 2110 12 2788887777654 2
Q ss_pred CCceEEEeeCCCC----------------------HHHHHHHHHcCCCEEEEcccccC
Q 015424 354 KNIIVVGESGLFT----------------------PDDIAYVQEAGVKAVLVGESIVK 389 (407)
Q Consensus 354 ~~v~vVAESGI~t----------------------~eD~~~l~~~GadaVLVGeaLmk 389 (407)
+++++|.=||=.. .++++++.++|+.-|=|++.|-.
T Consensus 223 ~~vPLVLHGgSG~p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~~ 280 (347)
T TIGR01521 223 PDTHLVMHGSSSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIKYGVRKVNIDTDLRL 280 (347)
T ss_pred CCCCEEEeCCCCCchHhhHHHHhhcccccccCCCCHHHHHHHHHCCCeeEEeChHHHH
Confidence 2456666555444 48999999999999999998754
No 315
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=95.96 E-value=1.2 Score=43.60 Aligned_cols=191 Identities=16% Similarity=0.111 Sum_probs=104.9
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCCC--HHHHHHHHhc--CCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCC
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKGS--FENLEAVRSA--GVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~Gs--~edL~~Vr~a--~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~ 273 (407)
+..+.++.+.+.|+..+.+.+........ .+.+..+++. ..++++...-..+++.++...+.+|+|.|.+... .+
T Consensus 66 ei~~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~g~~~~e~l~~Lk~aG~~~v~i~~E-~~ 144 (296)
T TIGR00433 66 EVLEEARKAKAAGATRFCLVASGRGPKDREFMEYVEAMVQIVEEMGLKTCATLGLLDPEQAKRLKDAGLDYYNHNLD-TS 144 (296)
T ss_pred HHHHHHHHHHHCCCCEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCCEEEEccc-CC
Confidence 44555566677898887776532211121 3456555431 1467765544468888999899999999988766 43
Q ss_pred H------------HHHHHHHHHHHHcCCcE----EEEe-CCHHHHHH----HhcccCCcEEEeecccccccccccccccc
Q 015424 274 D------------LDIRYMTKICKLLGLTA----LVEV-HDEREMDR----VLGIEGIELIGINNRNLAISIFSYRTETF 332 (407)
Q Consensus 274 ~------------~~L~~Li~~a~~LGL~a----LVEV-ht~eEler----Al~l~Ga~iIGINnRdL~~~~~~~t~~Tf 332 (407)
+ ++..+.++.+++.|+.+ ++-. .+.+++.. +.++ +++.+.++..- +.++++-..+
T Consensus 145 ~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl~et~~d~~~~~~~l~~l-~~~~i~l~~l~---p~~gT~l~~~ 220 (296)
T TIGR00433 145 QEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGLGETVEDRIGLALALANL-PPESVPINFLV---KIKGTPLADN 220 (296)
T ss_pred HHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeCCCCHHHHHHHHHHHHhC-CCCEEEeeeeE---EcCCCccCCC
Confidence 3 22334466677788875 3322 24455433 3344 77777776432 2222211222
Q ss_pred c-cCchhHHHHhhcccccccccCCceEEEeeCCCC-HHHHHH-HHHcCCCEEEEcccccCCCChHH
Q 015424 333 E-VDNSNTKKLLEGERGEIIRQKNIIVVGESGLFT-PDDIAY-VQEAGVKAVLVGESIVKQDDPGK 395 (407)
Q Consensus 333 ~-vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t-~eD~~~-l~~~GadaVLVGeaLmk~~dp~~ 395 (407)
. ++.+...+++...+ ..+ |...+.++.+--.. .+.... +..+|++++++|.-|+....+..
T Consensus 221 ~~~s~~~~~~~ia~~r-~~l-p~~~i~~~~~~~~~~~~~~~~~~l~~G~n~i~~g~~~~~~g~~~~ 284 (296)
T TIGR00433 221 KELSADDALKTIALAR-IIM-PKAEIRLAGGREVNMRELQQAMCFMAGANSIFVGDYLTTTGNPEE 284 (296)
T ss_pred CCCCHHHHHHHHHHHH-HHC-CcceEEEeCCcchhhhhhHHHHHHHhcCceEEEcCcccCCCCCCc
Confidence 2 34444444433221 112 33323222222111 233333 68899999999999998776654
No 316
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=95.95 E-value=0.075 Score=50.50 Aligned_cols=102 Identities=19% Similarity=0.102 Sum_probs=67.8
Q ss_pred ceEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEecccc--CCHH--
Q 015424 177 PALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFI--VDAW-- 252 (407)
Q Consensus 177 ~~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFI--id~~-- 252 (407)
..+|.|.-..-+--|...........++.+.+.||+.|-+ +|.++++.++.+.+. ..+||+.-..| .++.
T Consensus 123 ~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~-----~~~~~~~~~~~i~~~-~~~pvv~~GG~~~~~~~~~ 196 (235)
T cd00958 123 LPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKT-----KYTGDAESFKEVVEG-CPVPVVIAGGPKKDSEEEF 196 (235)
T ss_pred CCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEe-----cCCCCHHHHHHHHhc-CCCCEEEeCCCCCCCHHHH
Confidence 4577787432111111111112333366788999999998 366789999999886 78999874543 4554
Q ss_pred --HHHHHHHcCCCEEEEeccCCCHHHHHHHHHHH
Q 015424 253 --QIYYARTKGADAVLLIAAVLPDLDIRYMTKIC 284 (407)
Q Consensus 253 --QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a 284 (407)
++.++..+||++|+.+..++..++-...++..
T Consensus 197 l~~~~~~~~~Ga~gv~vg~~i~~~~dp~~~~~~~ 230 (235)
T cd00958 197 LKMVYDAMEAGAAGVAVGRNIFQRPDPVAMLRAI 230 (235)
T ss_pred HHHHHHHHHcCCcEEEechhhhcCCCHHHHHHHH
Confidence 48889999999999999998655544444443
No 317
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=95.94 E-value=0.075 Score=53.90 Aligned_cols=142 Identities=14% Similarity=0.183 Sum_probs=84.7
Q ss_pred HHHHhhhhcCCCceEEEEecccCCCcCCCCCCCCHHHHHHHHHHcC--CcEEEEEecC--------CcCCCCHHHHHHHH
Q 015424 165 GALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGG--AACLSILTDE--------KYFKGSFENLEAVR 234 (407)
Q Consensus 165 ~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~G--A~aISVLTd~--------~~F~Gs~edL~~Vr 234 (407)
..+++.. ....+|+.+=-.++.. .++.++.++.+..+ |-.|++..-+ ..|.+-++.++.+|
T Consensus 105 ~~vr~~~---~~~p~i~nl~~~~~~~------~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~ 175 (333)
T TIGR02151 105 EVVREEA---PNGPLIANIGAPQLVE------GGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKIAEIC 175 (333)
T ss_pred HHHHHhC---CCCcEEeecCchhhcc------ccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHH
Confidence 5555532 2345788764222211 12555555544444 4445553211 13445558899999
Q ss_pred hcCCCCcEEecc--ccCCHHHHHHHHHcCCCEEEEeccCCC-----------------------HHHHHHHHHHHH-HcC
Q 015424 235 SAGVKCPLLCKE--FIVDAWQIYYARTKGADAVLLIAAVLP-----------------------DLDIRYMTKICK-LLG 288 (407)
Q Consensus 235 ~a~v~lPVL~KD--FIid~~QI~eAr~~GADaVLLiaaiL~-----------------------~~~L~~Li~~a~-~LG 288 (407)
+. +++||..|. |..+...+....++|+|+|.+...-=+ -.....+.+... ..+
T Consensus 176 ~~-~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ 254 (333)
T TIGR02151 176 SQ-LSVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPD 254 (333)
T ss_pred Hh-cCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCC
Confidence 86 899999984 556776777778899999999653100 001122333322 234
Q ss_pred CcEEEE--eCCHHHHHHHhcccCCcEEEeec
Q 015424 289 LTALVE--VHDEREMDRVLGIEGIELIGINN 317 (407)
Q Consensus 289 L~aLVE--Vht~eElerAl~l~Ga~iIGINn 317 (407)
+.+++- ++|..++.+++.+ ||+.+++-.
T Consensus 255 ipVIasGGI~~~~di~kaLal-GAd~V~igr 284 (333)
T TIGR02151 255 APIIASGGLRTGLDVAKAIAL-GADAVGMAR 284 (333)
T ss_pred CeEEEECCCCCHHHHHHHHHh-CCCeehhhH
Confidence 555443 5799999999998 999999953
No 318
>PRK15452 putative protease; Provisional
Probab=95.88 E-value=0.16 Score=53.86 Aligned_cols=111 Identities=14% Similarity=0.213 Sum_probs=78.6
Q ss_pred CHHHHHHHHHcCCCEEEEecc---------CCCHHHHHHHHHHHHHcCCcEEEE----eCCHHH-------HHHHhcccC
Q 015424 250 DAWQIYYARTKGADAVLLIAA---------VLPDLDIRYMTKICKLLGLTALVE----VHDERE-------MDRVLGIEG 309 (407)
Q Consensus 250 d~~QI~eAr~~GADaVLLiaa---------iL~~~~L~~Li~~a~~LGL~aLVE----Vht~eE-------lerAl~l~G 309 (407)
+..|+..|..+|||+|.+... -++.+++++.+++||+.|..+.+- +|+ +| ++...++ |
T Consensus 12 ~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e-~el~~~~~~l~~l~~~-g 89 (443)
T PRK15452 12 TLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHN-AKLKTFIRDLEPVIAM-K 89 (443)
T ss_pred CHHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCH-HHHHHHHHHHHHHHhC-C
Confidence 467899999999999999654 345688999999999999999887 343 34 3444455 6
Q ss_pred CcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEE--eeCCCCHHHHHHHHHcCCCEEEEcccc
Q 015424 310 IELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVG--ESGLFTPDDIAYVQEAGVKAVLVGESI 387 (407)
Q Consensus 310 a~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVA--ESGI~t~eD~~~l~~~GadaVLVGeaL 387 (407)
+|-|-|.|-.+ ..+++.. . | +..+.+ .-.|++...++.+.+.|++.|++..-|
T Consensus 90 vDgvIV~d~G~-------------------l~~~ke~----~-p-~l~ih~stqlni~N~~a~~f~~~lG~~rvvLSrEL 144 (443)
T PRK15452 90 PDALIMSDPGL-------------------IMMVREH----F-P-EMPIHLSVQANAVNWATVKFWQQMGLTRVILSREL 144 (443)
T ss_pred CCEEEEcCHHH-------------------HHHHHHh----C-C-CCeEEEEecccCCCHHHHHHHHHCCCcEEEECCcC
Confidence 77666654332 2333321 1 1 333333 456899999999999999999988766
No 319
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=95.86 E-value=0.074 Score=55.03 Aligned_cols=92 Identities=13% Similarity=0.191 Sum_probs=70.0
Q ss_pred CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEecc---CC--CHHHHHHHHHHHHHcC--CcEEEE--eC
Q 015424 226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA---VL--PDLDIRYMTKICKLLG--LTALVE--VH 296 (407)
Q Consensus 226 s~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa---iL--~~~~L~~Li~~a~~LG--L~aLVE--Vh 296 (407)
+.++|+.+|+. +++||+.|+ |.++..+..+.++|+|+|.+-.. -+ .+..+..|.+.....+ +++++. |.
T Consensus 216 ~w~~i~~l~~~-~~~PvivKG-v~~~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr 293 (367)
T TIGR02708 216 SPRDIEEIAGY-SGLPVYVKG-PQCPEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVR 293 (367)
T ss_pred CHHHHHHHHHh-cCCCEEEeC-CCCHHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcC
Confidence 46899999986 899999997 56788888899999999876432 22 1234555666555554 777775 67
Q ss_pred CHHHHHHHhcccCCcEEEeecccc
Q 015424 297 DEREMDRVLGIEGIELIGINNRNL 320 (407)
Q Consensus 297 t~eElerAl~l~Ga~iIGINnRdL 320 (407)
+..++.+++.+ ||+.++|-.-=|
T Consensus 294 ~g~Dv~KaLal-GAd~V~igR~~l 316 (367)
T TIGR02708 294 RGQHVFKALAS-GADLVALGRPVI 316 (367)
T ss_pred CHHHHHHHHHc-CCCEEEEcHHHH
Confidence 99999999998 999999965433
No 320
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=95.85 E-value=1 Score=45.67 Aligned_cols=140 Identities=13% Similarity=0.090 Sum_probs=99.9
Q ss_pred CCcE-EeccccCCHHHHHHHHHcCCCEEEEeccCCCHH----HHHHHHHHHHHcCCcEEEE-------------------
Q 015424 239 KCPL-LCKEFIVDAWQIYYARTKGADAVLLIAAVLPDL----DIRYMTKICKLLGLTALVE------------------- 294 (407)
Q Consensus 239 ~lPV-L~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~----~L~~Li~~a~~LGL~aLVE------------------- 294 (407)
++|| |.-|-..+...+.+|..+|-+.|.++.+-|+-+ .-++.+++||..|+.+=.|
T Consensus 74 ~VPValHLDHg~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~ 153 (307)
T PRK05835 74 HIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAV 153 (307)
T ss_pred CCeEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCccccccccc
Confidence 4887 467877888999999999999999999999753 3567888899887766222
Q ss_pred eCCHHHHHHHhcccCCcEEEeecccccccccccc-ccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHH-----
Q 015424 295 VHDEREMDRVLGIEGIELIGINNRNLAISIFSYR-TETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPD----- 368 (407)
Q Consensus 295 Vht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t-~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~e----- 368 (407)
-.|.+|+.+..+..|+|.+.|.-=+. || .|. +.....|++...++.+.+ ++++|.=||=..|+
T Consensus 154 ~TdPeeA~~Fv~~TgvD~LAvaiGt~--HG-~Yk~~~~p~L~f~~L~~I~~~~--------~iPLVLHGgSGip~e~~~~ 222 (307)
T PRK05835 154 LVNPKEAEQFVKESQVDYLAPAIGTS--HG-AFKFKGEPKLDFERLQEVKRLT--------NIPLVLHGASAIPDDVRKS 222 (307)
T ss_pred CCCHHHHHHHHHhhCCCEEEEccCcc--cc-ccCCCCCCccCHHHHHHHHHHh--------CCCEEEeCCCCCchHHhhh
Confidence 22467777766545999888863333 11 121 124568888888876641 45666655544444
Q ss_pred -----------------HHHHHHHcCCCEEEEcccccC
Q 015424 369 -----------------DIAYVQEAGVKAVLVGESIVK 389 (407)
Q Consensus 369 -----------------D~~~l~~~GadaVLVGeaLmk 389 (407)
+++++.++|+.-|=|++.|..
T Consensus 223 ~~~~g~~~~~~~g~~~e~~~kai~~GI~KiNi~T~l~~ 260 (307)
T PRK05835 223 YLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRI 260 (307)
T ss_pred hhhhccccccccCCCHHHHHHHHHcCceEEEeChHHHH
Confidence 899999999999999998854
No 321
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=95.85 E-value=0.085 Score=50.08 Aligned_cols=90 Identities=20% Similarity=0.204 Sum_probs=61.2
Q ss_pred ceEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEEecCCcCCCC------HHHHHHHHhcCCCCcEEeccccCC
Q 015424 177 PALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGS------FENLEAVRSAGVKCPLLCKEFIVD 250 (407)
Q Consensus 177 ~~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs------~edL~~Vr~a~v~lPVL~KDFIid 250 (407)
.-++|+| .-.+=+....+.|+++|+- |..+|-..+ ++.++.+++ .++||++-+-|-+
T Consensus 93 ~l~MADi--------------st~ee~~~A~~~G~D~I~T-TLsGYT~~t~~~~pD~~lv~~l~~--~~~pvIaEGri~t 155 (192)
T PF04131_consen 93 QLVMADI--------------STLEEAINAAELGFDIIGT-TLSGYTPYTKGDGPDFELVRELVQ--ADVPVIAEGRIHT 155 (192)
T ss_dssp SEEEEE---------------SSHHHHHHHHHTT-SEEE--TTTTSSTTSTTSSHHHHHHHHHHH--TTSEEEEESS--S
T ss_pred cEEeeec--------------CCHHHHHHHHHcCCCEEEc-ccccCCCCCCCCCCCHHHHHHHHh--CCCcEeecCCCCC
Confidence 5677777 2345677888899999996 666665443 455555555 3899999999999
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCHHHH-HHHHHH
Q 015424 251 AWQIYYARTKGADAVLLIAAVLPDLDI-RYMTKI 283 (407)
Q Consensus 251 ~~QI~eAr~~GADaVLLiaaiL~~~~L-~~Li~~ 283 (407)
|.|+.++..+||++|..+.++-.+..+ +.|++.
T Consensus 156 pe~a~~al~~GA~aVVVGsAITrP~~It~~F~~a 189 (192)
T PF04131_consen 156 PEQAAKALELGAHAVVVGSAITRPQEITKRFVDA 189 (192)
T ss_dssp HHHHHHHHHTT-SEEEE-HHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHhcCCeEEEECcccCCHHHHHHHHHHH
Confidence 999999999999999999998877543 345443
No 322
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=95.83 E-value=0.038 Score=51.84 Aligned_cols=80 Identities=19% Similarity=0.343 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHcCCcEEEEEecC---CcC-CCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHc-CCCEEEEeccC
Q 015424 197 FDPVEIARSYEKGGAACLSILTDE---KYF-KGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTK-GADAVLLIAAV 271 (407)
Q Consensus 197 ~dp~~iA~ay~~~GA~aISVLTd~---~~F-~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~-GADaVLLiaai 271 (407)
.+..++++.+++.|++.|+|-.-. .+. ...++.++.+|+. +++||+.-..|.++.++.++... |||+|.+.-.+
T Consensus 138 ~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~-~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~ 216 (231)
T cd02801 138 EETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEA-VSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGA 216 (231)
T ss_pred hHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhC-CCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHh
Confidence 378889999999999999875431 122 3467888889986 89999999989999999999887 89999999888
Q ss_pred CCHHHH
Q 015424 272 LPDLDI 277 (407)
Q Consensus 272 L~~~~L 277 (407)
+.+.++
T Consensus 217 l~~P~~ 222 (231)
T cd02801 217 LGNPWL 222 (231)
T ss_pred HhCCHH
Confidence 876554
No 323
>PRK02227 hypothetical protein; Provisional
Probab=95.82 E-value=0.2 Score=49.15 Aligned_cols=150 Identities=17% Similarity=0.211 Sum_probs=94.8
Q ss_pred cccCCCcCCCCCCCCHHHHHHHH---HHcCCcEEEEEecCCcCCCCH-----HHHHHH----HhcCCC---CcEEeccc-
Q 015424 184 KKASPSRGILREDFDPVEIARSY---EKGGAACLSILTDEKYFKGSF-----ENLEAV----RSAGVK---CPLLCKEF- 247 (407)
Q Consensus 184 KraSPSkG~i~~~~dp~~iA~ay---~~~GA~aISVLTd~~~F~Gs~-----edL~~V----r~a~v~---lPVL~KDF- 247 (407)
|.-|.+-|.+ +.+|..++.+. ...|++-|=| +.|+++- +-+..+ +....+ ++++.-|+
T Consensus 53 ~pvSAtiGD~--p~~p~~~~~aa~~~a~~GvDyVKv----Gl~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~ 126 (238)
T PRK02227 53 KPVSATIGDV--PYKPGTISLAALGAAATGADYVKV----GLYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAH 126 (238)
T ss_pred CCceeeccCC--CCCchHHHHHHHHHHhhCCCEEEE----cCCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccc
Confidence 3345556665 34565665554 4468888877 4555443 223322 211112 45555553
Q ss_pred ---cCCHHHHH-HHHHcCCCEEEEecc---------CCCHHHHHHHHHHHHHcCCcE-EEEeCCHHHHHHHhcccCCcEE
Q 015424 248 ---IVDAWQIY-YARTKGADAVLLIAA---------VLPDLDIRYMTKICKLLGLTA-LVEVHDEREMDRVLGIEGIELI 313 (407)
Q Consensus 248 ---Iid~~QI~-eAr~~GADaVLLiaa---------iL~~~~L~~Li~~a~~LGL~a-LVEVht~eElerAl~l~Ga~iI 313 (407)
-+++..+- .++.+|+|+++|+++ .++.++|.+|++.++++||.+ |.--=..+++.....+ +++++
T Consensus 127 r~~~~~~~~l~~~a~~aGf~g~MlDTa~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~gLAGSL~~~dip~L~~l-~pD~l 205 (238)
T PRK02227 127 RVGSVSPLSLPAIAADAGFDGAMLDTAIKDGKSLFDHMDEEELAEFVAEARSHGLMSALAGSLKFEDIPALKRL-GPDIL 205 (238)
T ss_pred cccCCChHHHHHHHHHcCCCEEEEecccCCCcchHhhCCHHHHHHHHHHHHHcccHhHhcccCchhhHHHHHhc-CCCEE
Confidence 24666654 478899999999987 357789999999999999976 5555577888888888 99999
Q ss_pred EeeccccccccccccccccccCchhHHHHhhc
Q 015424 314 GINNRNLAISIFSYRTETFEVDNSNTKKLLEG 345 (407)
Q Consensus 314 GINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~ 345 (407)
|+..-== . +.. .+-.+|.+...++.+.
T Consensus 206 GfRgavC---~-g~d-R~~~id~~~V~~~~~~ 232 (238)
T PRK02227 206 GVRGAVC---G-GGD-RTGRIDPELVAELREA 232 (238)
T ss_pred Eechhcc---C-CCC-cccccCHHHHHHHHHH
Confidence 9943100 0 000 2335777777666654
No 324
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=95.79 E-value=0.058 Score=52.79 Aligned_cols=75 Identities=31% Similarity=0.269 Sum_probs=62.5
Q ss_pred CCCHHHHHHHHHHcCCcEEEEEecCCcC-C--CCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCC
Q 015424 196 DFDPVEIARSYEKGGAACLSILTDEKYF-K--GSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (407)
Q Consensus 196 ~~dp~~iA~ay~~~GA~aISVLTd~~~F-~--Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (407)
..||+ +|+.+++.|+.++.=+.-|--- . -+..+|+.+++. .++||+..-.|=.|-+..+|.+.|+|+||+.+++-
T Consensus 138 ~dD~v-~arrLee~GcaavMPl~aPIGSg~G~~n~~~l~iiie~-a~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA 215 (262)
T COG2022 138 TDDPV-LARRLEEAGCAAVMPLGAPIGSGLGLQNPYNLEIIIEE-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIA 215 (262)
T ss_pred CCCHH-HHHHHHhcCceEeccccccccCCcCcCCHHHHHHHHHh-CCCCEEEeCCCCChhHHHHHHhcccceeehhhHhh
Confidence 34666 8999999999999877655311 1 267899999986 69999999899999999999999999999998866
No 325
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=95.79 E-value=0.049 Score=53.01 Aligned_cols=78 Identities=22% Similarity=0.175 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHc----CCcEEEEEecCCcCCCC---HHHHHHHHhcCCCC-cEEeccccCCHHHHHHHHHcCCCEEEE
Q 015424 196 DFDPVEIARSYEKG----GAACLSILTDEKYFKGS---FENLEAVRSAGVKC-PLLCKEFIVDAWQIYYARTKGADAVLL 267 (407)
Q Consensus 196 ~~dp~~iA~ay~~~----GA~aISVLTd~~~F~Gs---~edL~~Vr~a~v~l-PVL~KDFIid~~QI~eAr~~GADaVLL 267 (407)
+.+..++|..|.-+ |-. +- .++.....|+ ++.++.+|+. +++ ||+....|.++.|+.++..+|||+|.+
T Consensus 136 ~~~~~~~~~~~~lA~~~~g~~-~v-Yle~gs~~g~~~~~e~I~~v~~~-~~~~pvivGGGIrs~e~a~~~l~~GAD~VVV 212 (232)
T PRK04169 136 PLDKPDIAAYAALAAEYLGMP-IV-YLEYGGGAGDPVPPEMVKAVKKA-LDITPLIYGGGIRSPEQARELMAAGADTIVV 212 (232)
T ss_pred CCChHHHHHHHHHHHHHcCCC-eE-EEECCCCCCCCCCHHHHHHHHHh-cCCCcEEEECCCCCHHHHHHHHHhCCCEEEE
Confidence 56778888777554 543 22 3343334465 8889999986 788 999999999999999999999999999
Q ss_pred eccCCCHHH
Q 015424 268 IAAVLPDLD 276 (407)
Q Consensus 268 iaaiL~~~~ 276 (407)
+..+..+.+
T Consensus 213 GSai~~d~~ 221 (232)
T PRK04169 213 GNIIEEDPK 221 (232)
T ss_pred ChHHhhCHH
Confidence 998886644
No 326
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=95.76 E-value=0.071 Score=54.33 Aligned_cols=73 Identities=23% Similarity=0.234 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCC-C--CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCC
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFK-G--SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~-G--s~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (407)
|| ..|+++++.|+.++.-++++=--+ | ++++|+.+++. .++||++.-.|-.+.++++|.++|||+||+.+++.
T Consensus 207 d~-~~a~~l~~~g~~avmPl~~pIGsg~gv~~p~~i~~~~e~-~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa 282 (326)
T PRK11840 207 DP-IAAKRLEDAGAVAVMPLGAPIGSGLGIQNPYTIRLIVEG-ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIA 282 (326)
T ss_pred CH-HHHHHHHhcCCEEEeeccccccCCCCCCCHHHHHHHHHc-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceec
Confidence 44 478999999997777766553211 1 67899998886 78999999999999999999999999999998887
No 327
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=95.73 E-value=0.027 Score=56.77 Aligned_cols=74 Identities=19% Similarity=0.170 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHcCCcEEEEEec---------------CCcCCCC------HHHHHHHHhcCC--CCcEEeccccCCHHHH
Q 015424 198 DPVEIARSYEKGGAACLSILTD---------------EKYFKGS------FENLEAVRSAGV--KCPLLCKEFIVDAWQI 254 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd---------------~~~F~Gs------~edL~~Vr~a~v--~lPVL~KDFIid~~QI 254 (407)
+..++|+..+++||++|.+..- ..-|.|. ++.+..+++. + ++||+.-..|.+..++
T Consensus 217 ~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~-~~~~ipIi~~GGI~t~~da 295 (327)
T cd04738 217 ELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKL-TGGKIPIIGVGGISSGEDA 295 (327)
T ss_pred HHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHH-hCCCCcEEEECCCCCHHHH
Confidence 6789999999999999997541 1123342 5778888876 6 7999998889999999
Q ss_pred HHHHHcCCCEEEEeccCC
Q 015424 255 YYARTKGADAVLLIAAVL 272 (407)
Q Consensus 255 ~eAr~~GADaVLLiaaiL 272 (407)
.+...+|||+|.+..+++
T Consensus 296 ~e~l~aGAd~V~vg~~~~ 313 (327)
T cd04738 296 YEKIRAGASLVQLYTGLV 313 (327)
T ss_pred HHHHHcCCCHHhccHHHH
Confidence 999999999999988875
No 328
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=95.72 E-value=0.0063 Score=59.12 Aligned_cols=169 Identities=20% Similarity=0.317 Sum_probs=95.5
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCCCH-----HH-HHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccC
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKGSF-----EN-LEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV 271 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~-----ed-L~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaai 271 (407)
.+.+..+...+.|+++|-|= ||. ++ +..+++. +++||+-- .=++.|| .-|||++|+. ++
T Consensus 20 ~~~~~~~~~~~~gtDai~VG-------GS~~~~~~d~vv~~ik~~-~~lPvilf--Pg~~~~v----s~~aDail~~-sv 84 (230)
T PF01884_consen 20 NPEEALEAACESGTDAIIVG-------GSDTGVTLDNVVALIKRV-TDLPVILF--PGSPSQV----SPGADAILFP-SV 84 (230)
T ss_dssp -HHHHHHHHHCTT-SEEEEE--------STHCHHHHHHHHHHHHH-SSS-EEEE--TSTCCG------TTSSEEEEE-EE
T ss_pred CcHHHHHHHHhcCCCEEEEC-------CCCCccchHHHHHHHHhc-CCCCEEEe--CCChhhc----CcCCCEEEEE-EE
Confidence 45566666688999999983 555 22 3455665 89998742 2223344 2589999885 44
Q ss_pred CC--------HHHHHHHHHHHHHcCCcEEEE--------------------eCCHHHHHHHhcc----cCCcEEEeeccc
Q 015424 272 LP--------DLDIRYMTKICKLLGLTALVE--------------------VHDEREMDRVLGI----EGIELIGINNRN 319 (407)
Q Consensus 272 L~--------~~~L~~Li~~a~~LGL~aLVE--------------------Vht~eElerAl~l----~Ga~iIGINnRd 319 (407)
|+ ..+.+.. ...+.++++++-| =++..|+-.+..+ -|.++|-+.-
T Consensus 85 lNs~n~~~iig~~~~aa-~~~~~~~~e~ip~gYivi~~g~~v~~v~~a~pi~~~~~~iaa~~alA~~~~g~~~iYLEa-- 161 (230)
T PF01884_consen 85 LNSRNPYWIIGAQVEAA-PLIKKLGLEVIPTGYIVINPGSKVARVTGARPIPLDKPEIAAAAALAAEYLGMPIIYLEA-- 161 (230)
T ss_dssp TTBSSTTTTTHHHHHHH-HHCHHHHCCEEEEEEEEESTTSHHHHHTTB-----SHHHHHHHHHHHHHHTT-SEEEEE---
T ss_pred ecCCCcchHhhHHHHHH-HHHHhhcceecceEEEEECCCCceEEeecceecCCCcHHHHHHHHHHHHHhCCCEEEEEe--
Confidence 42 2232222 2344567777432 1244444333322 2555665531
Q ss_pred cccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHh
Q 015424 320 LAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITG 399 (407)
Q Consensus 320 L~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~ 399 (407)
|+| ++..-.+...+..+. + .+.+++..|||+|+|+++.+.++|||.|+||+++.+..+..++++.
T Consensus 162 --GSG------a~~~v~~~v~~~~~~-----~--~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~~~~e~~~~~ 226 (230)
T PF01884_consen 162 --GSG------AYGPVPEEVIAAVKK-----L--SDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEEDPDLEEALET 226 (230)
T ss_dssp ---TT------SSS-HHHHHHHHHHH-----S--SSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHHH-HHHHHTH
T ss_pred --CCC------CCCCccHHHHHHHHh-----c--CCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEcchHHHHHHH
Confidence 111 222111334444443 2 4689999999999999999999999999999999998886665544
No 329
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=95.71 E-value=0.1 Score=53.68 Aligned_cols=92 Identities=16% Similarity=0.237 Sum_probs=70.7
Q ss_pred CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEec---cCC--CHHHHHHHHHHHHHc--CCcEEEE--eC
Q 015424 226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA---AVL--PDLDIRYMTKICKLL--GLTALVE--VH 296 (407)
Q Consensus 226 s~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLia---aiL--~~~~L~~Li~~a~~L--GL~aLVE--Vh 296 (407)
+.++|+.+|+. +++||+.|. |.++.....+..+|||+|.+.- ..+ .+..+..+.+.++.+ .+.+++. |.
T Consensus 209 ~~~~l~~lr~~-~~~PvivKg-v~~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr 286 (351)
T cd04737 209 SPADIEFIAKI-SGLPVIVKG-IQSPEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVR 286 (351)
T ss_pred CHHHHHHHHHH-hCCcEEEec-CCCHHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECCCC
Confidence 68999999986 899999997 5788888889999999999831 111 223455566666555 3666664 67
Q ss_pred CHHHHHHHhcccCCcEEEeecccc
Q 015424 297 DEREMDRVLGIEGIELIGINNRNL 320 (407)
Q Consensus 297 t~eElerAl~l~Ga~iIGINnRdL 320 (407)
+-.++.+++.+ ||+.++|-..-|
T Consensus 287 ~g~Di~kaLal-GA~~V~iGr~~l 309 (351)
T cd04737 287 RGEHVFKALAS-GADAVAVGRPVL 309 (351)
T ss_pred CHHHHHHHHHc-CCCEEEECHHHH
Confidence 99999999998 999999965544
No 330
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=95.69 E-value=0.1 Score=52.23 Aligned_cols=86 Identities=14% Similarity=0.137 Sum_probs=63.5
Q ss_pred CCHHHHHHHHhcCCCCcEE--eccccCCHHHHHHHHHcCCCEEEEeccCCC---H-HHHHHHHHHHHHcCCcEEEEeCCH
Q 015424 225 GSFENLEAVRSAGVKCPLL--CKEFIVDAWQIYYARTKGADAVLLIAAVLP---D-LDIRYMTKICKLLGLTALVEVHDE 298 (407)
Q Consensus 225 Gs~edL~~Vr~a~v~lPVL--~KDFIid~~QI~eAr~~GADaVLLiaaiL~---~-~~L~~Li~~a~~LGL~aLVEVht~ 298 (407)
=+++.|+.+++. .++||+ +=..|-+|.++..+..+|||+|.++.++.. + ...+.|.+..+. -+|.
T Consensus 184 ~~~elLkei~~~-~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~--------~~~~ 254 (287)
T TIGR00343 184 VPVELLLEVLKL-GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTH--------YDNP 254 (287)
T ss_pred CCHHHHHHHHHh-CCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHH--------cCCH
Confidence 467888888886 789998 777778999999999999999999999973 2 334556665544 2455
Q ss_pred HHHHH-HhcccCCcEEEeecccc
Q 015424 299 REMDR-VLGIEGIELIGINNRNL 320 (407)
Q Consensus 299 eEler-Al~l~Ga~iIGINnRdL 320 (407)
+-+.. ...+ |-.+.|+|...+
T Consensus 255 ~~~~e~s~~~-~~~m~g~~~~~~ 276 (287)
T TIGR00343 255 EKLAEVSKDL-GEAMKGISISSI 276 (287)
T ss_pred HHHHHHHccc-cccCCCCccccC
Confidence 44433 3345 667999987766
No 331
>PRK15108 biotin synthase; Provisional
Probab=95.66 E-value=1.3 Score=45.28 Aligned_cols=199 Identities=12% Similarity=0.092 Sum_probs=105.5
Q ss_pred CCHHHH---HHHHHHcCCcEEEEEec-CCcCCCCHHHHHHH----HhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEe
Q 015424 197 FDPVEI---ARSYEKGGAACLSILTD-EKYFKGSFENLEAV----RSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLI 268 (407)
Q Consensus 197 ~dp~~i---A~ay~~~GA~aISVLTd-~~~F~Gs~edL~~V----r~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLi 268 (407)
.++.++ |+.+.+.|+..+.+.+- ..-+.=.++++..+ |+ ..+++..--..+++.++.+-+++|+|++.+.
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~--~~i~v~~s~G~ls~e~l~~LkeAGld~~n~~ 153 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKA--MGLETCMTLGTLSESQAQRLANAGLDYYNHN 153 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHh--CCCEEEEeCCcCCHHHHHHHHHcCCCEEeec
Confidence 355555 55556789998877532 11111124444333 43 3566543334577888888899999988873
Q ss_pred cc--------CC---CHHHHHHHHHHHHHcCCcE----EEE-eCCHHHHHHHh----ccc-CCcEEEeeccccccccccc
Q 015424 269 AA--------VL---PDLDIRYMTKICKLLGLTA----LVE-VHDEREMDRVL----GIE-GIELIGINNRNLAISIFSY 327 (407)
Q Consensus 269 aa--------iL---~~~~L~~Li~~a~~LGL~a----LVE-Vht~eElerAl----~l~-Ga~iIGINnRdL~~~~~~~ 327 (407)
.. +. +-++.-+.++.+++.|+.+ |+- ..+.+|.-..+ ++. ..+.|.+|-..- .++++.
T Consensus 154 leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P-~~gTpl 232 (345)
T PRK15108 154 LDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVK-VKGTPL 232 (345)
T ss_pred cccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEEEeCCccC-CCCCCC
Confidence 32 22 2345556777788888865 222 22555543322 221 234677764311 122222
Q ss_pred cccccccCchhHHHHhhcccccccccCCceEEEeeCC-CCHHHHHHHHHcCCCEEEEccc-ccCCCChHHHHHhhh
Q 015424 328 RTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGL-FTPDDIAYVQEAGVKAVLVGES-IVKQDDPGKGITGLF 401 (407)
Q Consensus 328 t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI-~t~eD~~~l~~~GadaVLVGea-Lmk~~dp~~~i~~L~ 401 (407)
... ..++.....+.+...| .+.|+..+.++.|-. ..++.......+||+++++|+. |+......+...+++
T Consensus 233 ~~~-~~~~~~e~lr~iAi~R--l~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~ltt~g~~~~~~~~~i 305 (345)
T PRK15108 233 ADN-DDVDAFDFIRTIAVAR--IMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLF 305 (345)
T ss_pred CCC-CCCCHHHHHHHHHHHH--HHCCCceeeecccHhHhChhhHHHHHHcCCcEEEECCccccCCCCCHHHHHHHH
Confidence 111 1123333333333221 123444455555552 3445567788999999999997 555554444444554
No 332
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.66 E-value=0.83 Score=47.21 Aligned_cols=186 Identities=19% Similarity=0.175 Sum_probs=122.8
Q ss_pred ceEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEE-----ecCCcCCC----CHHHHHHHHhcCCCCcEEeccc
Q 015424 177 PALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSIL-----TDEKYFKG----SFENLEAVRSAGVKCPLLCKEF 247 (407)
Q Consensus 177 ~~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVL-----Td~~~F~G----s~edL~~Vr~a~v~lPVL~KDF 247 (407)
+.|||+ | ..+....-..++|+...+.|+..+.-- |-|..|+| .++.|.++++. ..+|++.-
T Consensus 102 l~vIAG-----P--CsIEs~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e-~Gl~~~te-- 171 (352)
T PRK13396 102 VVVVAG-----P--CSVENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREA-TGLGIITE-- 171 (352)
T ss_pred EEEEEe-----C--CcccCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHH-cCCcEEEe--
Confidence 456776 3 345545556788899999998877632 55567777 56777787776 79999964
Q ss_pred cCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHHHHhcc---cCCcEEEeeccccc
Q 015424 248 IVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGI---EGIELIGINNRNLA 321 (407)
Q Consensus 248 Iid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVh---t~eElerAl~l---~Ga~iIGINnRdL~ 321 (407)
+.|+.|+..+..+ +|.+-+.+.-+.+-+ |++.+-+.|..+++.-. |.+|+..|++. .|..-|.+-.|..
T Consensus 172 v~d~~~v~~~~~~-~d~lqIga~~~~n~~---LL~~va~t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~- 246 (352)
T PRK13396 172 VMDAADLEKIAEV-ADVIQVGARNMQNFS---LLKKVGAQDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGI- 246 (352)
T ss_pred eCCHHHHHHHHhh-CCeEEECcccccCHH---HHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCC-
Confidence 3678899998888 899999888887744 45666677888888764 78888777653 2555566666633
Q ss_pred cccc--cccccccccCchhHHHHhhcccccccccCCceEEEe-e---CCC--CHHHHHHHHHcCCCEEEEccccc
Q 015424 322 ISIF--SYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGE-S---GLF--TPDDIAYVQEAGVKAVLVGESIV 388 (407)
Q Consensus 322 ~~~~--~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAE-S---GI~--t~eD~~~l~~~GadaVLVGeaLm 388 (407)
..| +|+ ...+|+.....|.+. .++++|+- | |.+ ++.-......+||||++|=.-..
T Consensus 247 -rtf~s~y~--~~~~dl~ai~~lk~~--------~~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H~~ 310 (352)
T PRK13396 247 -RTFDRQYT--RNTLDLSVIPVLRSL--------THLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHPN 310 (352)
T ss_pred -ccCcCCCC--CCCcCHHHHHHHHHh--------hCCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEecCC
Confidence 011 233 355788777666443 13334221 1 332 33445666788999999875443
No 333
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=95.61 E-value=0.089 Score=50.84 Aligned_cols=74 Identities=26% Similarity=0.192 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHcCCcEEEEEecC-CcCCCCHHHHHHHHhcCC-CCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCCHH
Q 015424 198 DPVEIARSYEKGGAACLSILTDE-KYFKGSFENLEAVRSAGV-KCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDL 275 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~-~~F~Gs~edL~~Vr~a~v-~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~ 275 (407)
+...+|.+.+..| ++++-.+ .--.++++.++.+|+. + ++||+....|.++.|+.++..+|||.|.++..+..+.
T Consensus 136 ~~~ayA~aae~~g---~~ivyLe~SG~~~~~e~I~~v~~~-~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~~p 211 (219)
T cd02812 136 DAAAYALAAEYLG---MPIVYLEYSGAYGPPEVVRAVKKV-LGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEEDP 211 (219)
T ss_pred HHHHHHHHHHHcC---CeEEEeCCCCCcCCHHHHHHHHHh-cCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhCCH
Confidence 5566677778888 6666544 1112567788888886 7 8999999999999999999999999999999888763
No 334
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=95.56 E-value=0.29 Score=49.80 Aligned_cols=75 Identities=9% Similarity=0.110 Sum_probs=53.5
Q ss_pred CCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcC-CCEEEEcccc
Q 015424 309 GIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAG-VKAVLVGESI 387 (407)
Q Consensus 309 Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~G-adaVLVGeaL 387 (407)
|+++|-|..... ....-..+.+....+.+. -+++|++.|||. ++++..+.+.| +|.|-+|.++
T Consensus 254 g~d~i~vs~g~~-------~~~~~~~~~~~~~~ik~~--------~~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~ 317 (338)
T cd02933 254 GLAYLHLVEPRV-------AGNPEDQPPDFLDFLRKA--------FKGPLIAAGGYD-AESAEAALADGKADLVAFGRPF 317 (338)
T ss_pred CCcEEEEecCCC-------CCcccccchHHHHHHHHH--------cCCCEEEECCCC-HHHHHHHHHcCCCCEEEeCHhh
Confidence 788888854322 001112334444444443 257899999997 99999999876 9999999999
Q ss_pred cCCCChHHHHHh
Q 015424 388 VKQDDPGKGITG 399 (407)
Q Consensus 388 mk~~dp~~~i~~ 399 (407)
+..++...++++
T Consensus 318 ladP~~~~k~~~ 329 (338)
T cd02933 318 IANPDLVERLKN 329 (338)
T ss_pred hhCcCHHHHHhc
Confidence 999998887764
No 335
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=95.55 E-value=1.5 Score=42.75 Aligned_cols=167 Identities=17% Similarity=0.163 Sum_probs=100.0
Q ss_pred HHHHHHHHHcCCcEEEEEec-CCcCCCCHHH----HHHHHhc-CCCCcEEeccccCCHH----HHHHHHHcCCCEEEEec
Q 015424 200 VEIARSYEKGGAACLSILTD-EKYFKGSFEN----LEAVRSA-GVKCPLLCKEFIVDAW----QIYYARTKGADAVLLIA 269 (407)
Q Consensus 200 ~~iA~ay~~~GA~aISVLTd-~~~F~Gs~ed----L~~Vr~a-~v~lPVL~KDFIid~~----QI~eAr~~GADaVLLia 269 (407)
.++.+.+.+.|+.+|-++.- ..|+.=+.+. ++.+++. .-++||+..=.-.+.. +...|..+|||+|+++.
T Consensus 21 ~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~p 100 (281)
T cd00408 21 RRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVP 100 (281)
T ss_pred HHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECC
Confidence 34556677889999988732 2222223332 2233332 1268999755433332 34457789999999988
Q ss_pred cCC---CHHHHHH-HHHHHHHcCCcEEEE-------eC-CHHHHHHHhcccCCcEEEeeccccccccccccccccccCch
Q 015424 270 AVL---PDLDIRY-MTKICKLLGLTALVE-------VH-DEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNS 337 (407)
Q Consensus 270 aiL---~~~~L~~-Li~~a~~LGL~aLVE-------Vh-t~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~ 337 (407)
-.. +++++.+ +.+.+...++..++= +. +.+.+.+..+. ..++|| +.-..|+.
T Consensus 101 P~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~~--~~v~gi--------------K~s~~d~~ 164 (281)
T cd00408 101 PYYNKPSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAEH--PNIVGI--------------KDSSGDLD 164 (281)
T ss_pred CcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhcC--CCEEEE--------------EeCCCCHH
Confidence 644 4555444 445555567766542 11 46666666653 579999 44456888
Q ss_pred hHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCC
Q 015424 338 NTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD 392 (407)
Q Consensus 338 ~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~d 392 (407)
...+++... +++ +.|.. |- -+.+......|++|++-|.+-+-++-
T Consensus 165 ~~~~~~~~~------~~~-~~v~~-G~--d~~~~~~l~~G~~G~i~~~~n~~p~~ 209 (281)
T cd00408 165 RLTRLIALL------GPD-FAVLS-GD--DDLLLPALALGADGAISGAANVAPKL 209 (281)
T ss_pred HHHHHHHhc------CCC-eEEEE-cc--hHHHHHHHHcCCCEEEehHHhhCHHH
Confidence 887876642 233 33333 33 34566677899999999976544333
No 336
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=95.55 E-value=0.033 Score=54.52 Aligned_cols=79 Identities=24% Similarity=0.321 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHcCCcEEEEEe-------c-----------CCcCCC------CHHHHHHHHhcCC--CCcEEeccccCCH
Q 015424 198 DPVEIARSYEKGGAACLSILT-------D-----------EKYFKG------SFENLEAVRSAGV--KCPLLCKEFIVDA 251 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLT-------d-----------~~~F~G------s~edL~~Vr~a~v--~lPVL~KDFIid~ 251 (407)
+..++|+.+++.||++|.+-. + ..++.| +++.+..+++. + ++||+.-..|.++
T Consensus 177 ~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~-~~~~ipiia~GGI~~~ 255 (289)
T cd02810 177 DIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAAR-LQLDIPIIGVGGIDSG 255 (289)
T ss_pred HHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHh-cCCCCCEEEECCCCCH
Confidence 578899999999999999841 0 011222 35677888876 7 8999999999999
Q ss_pred HHHHHHHHcCCCEEEEeccCCCH-HHH
Q 015424 252 WQIYYARTKGADAVLLIAAVLPD-LDI 277 (407)
Q Consensus 252 ~QI~eAr~~GADaVLLiaaiL~~-~~L 277 (407)
.++.++..+|||+|.+..+++.+ .++
T Consensus 256 ~da~~~l~~GAd~V~vg~a~~~~GP~~ 282 (289)
T cd02810 256 EDVLEMLMAGASAVQVATALMWDGPDV 282 (289)
T ss_pred HHHHHHHHcCccHheEcHHHHhcCccH
Confidence 99999999999999998887754 444
No 337
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=95.54 E-value=0.35 Score=50.45 Aligned_cols=181 Identities=18% Similarity=0.213 Sum_probs=102.1
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCc----C-CCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCC
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKY----F-KGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~----F-~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (407)
++.+.++.+.+.|++.|.+- +.| | ...++.|+.+++. .++||+.-. .+.+..+.++..+|||+|.++.++.
T Consensus 119 t~~e~~~~a~~~GaD~I~~~--pg~~~~~~~~~~~~~l~~l~~~-~~iPI~a~G-GI~~~n~~~~l~aGAdgv~vGsaI~ 194 (430)
T PRK07028 119 DPVKRAVELEELGVDYINVH--VGIDQQMLGKDPLELLKEVSEE-VSIPIAVAG-GLDAETAAKAVAAGADIVIVGGNII 194 (430)
T ss_pred CHHHHHHHHHhcCCCEEEEE--eccchhhcCCChHHHHHHHHhh-CCCcEEEEC-CCCHHHHHHHHHcCCCEEEEChHHc
Confidence 45667788888899999664 322 1 3456888888875 789998754 4688999999999999999999988
Q ss_pred CHHHHHHHHH----HHHHc---CCcEEEEeCCHHHHHHHhcccCCcEE-----------Eeecc--cccccccccccccc
Q 015424 273 PDLDIRYMTK----ICKLL---GLTALVEVHDEREMDRVLGIEGIELI-----------GINNR--NLAISIFSYRTETF 332 (407)
Q Consensus 273 ~~~~L~~Li~----~a~~L---GL~aLVEVht~eElerAl~l~Ga~iI-----------GINnR--dL~~~~~~~t~~Tf 332 (407)
...+..+..+ ..++. .++-+-+--+.+.+++...+ ....| ++... +.-.-|+.+|=...
T Consensus 195 ~~~d~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-~t~~i~d~l~~~g~~~~i~p~~~~~~~~G~A~Tv~~~ 273 (430)
T PRK07028 195 KSADVTEAARKIREAIDSGKPVKIDKFKKSLDEEIREIFMQV-STPNISDAMHRKGAMKGIKPLVRGTKMVGKAVTVQTF 273 (430)
T ss_pred CCCCHHHHHHHHHHHHhccCCccccccccCCCHHHHHHhcCC-CCCcHHhhhhccCCCceeeecCCCCeEEEEEEEEEee
Confidence 6544443333 33331 33334444455555555444 21111 11110 00011222222222
Q ss_pred ccCchhHHHHhhcccccccccCCceEEEeeCC----CCHHHHHHHHHcCCCEEEEccccc
Q 015424 333 EVDNSNTKKLLEGERGEIIRQKNIIVVGESGL----FTPDDIAYVQEAGVKAVLVGESIV 388 (407)
Q Consensus 333 ~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI----~t~eD~~~l~~~GadaVLVGeaLm 388 (407)
..|.......+.. .+|.+++||..++. ..---...++..|+.|++|--++-
T Consensus 274 ~~d~~~~~~~~~~-----~~~G~VlVi~~~~~~~a~~G~~~~~~a~~~G~~G~VidG~vR 328 (430)
T PRK07028 274 AGDWAKPVEAIDV-----AKPGDVIVIYNSSKDIAPWGELATLSCLNKGIAGVVIDGAVR 328 (430)
T ss_pred CCCcHHHHHHHhc-----CCCCeEEEEECCCCCceeecHHHHHHHHHCCCeEEEEeeccC
Confidence 2343333333333 33556666665322 121223567788999998876554
No 338
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=95.52 E-value=0.05 Score=54.66 Aligned_cols=93 Identities=25% Similarity=0.244 Sum_probs=70.4
Q ss_pred CccHHHHHHhhhhcCCCceEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEEe-cC-CcC--CCCHHHHHHHHh
Q 015424 160 ARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILT-DE-KYF--KGSFENLEAVRS 235 (407)
Q Consensus 160 ~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVLT-d~-~~F--~Gs~edL~~Vr~ 235 (407)
+..+...|+.. ...|++.+ +| .+.|+..++.||++|.+-. +. ++. .+++..+..+++
T Consensus 98 p~~~i~~lk~~-----g~~v~~~v----~s----------~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~ 158 (307)
T TIGR03151 98 PGKYIPRLKEN-----GVKVIPVV----AS----------VALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVD 158 (307)
T ss_pred cHHHHHHHHHc-----CCEEEEEc----CC----------HHHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHH
Confidence 34577777663 35677666 21 3578888999999998742 22 221 135778888888
Q ss_pred cCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCC
Q 015424 236 AGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (407)
Q Consensus 236 a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (407)
. +++||+.-..|.++.++..+..+|||+|.++...+
T Consensus 159 ~-~~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~ 194 (307)
T TIGR03151 159 A-VSIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFL 194 (307)
T ss_pred H-hCCCEEEECCCCCHHHHHHHHHcCCCEeecchHHh
Confidence 6 89999999999999999999999999999998766
No 339
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=95.45 E-value=0.096 Score=51.23 Aligned_cols=90 Identities=20% Similarity=0.296 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccc
Q 015424 271 VLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEI 350 (407)
Q Consensus 271 iL~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~ 350 (407)
-|+.+++.+|.++|+++|++.+.-+-+.+.++...++ |++.+=|-..|+ + |+.....+++
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~-~~~~~KIaS~dl---------~----n~~lL~~~A~------ 111 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEEL-GVPAYKIASGDL---------T----NLPLLEYIAK------ 111 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHH-T-SEEEE-GGGT---------T-----HHHHHHHHT------
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHc-CCCEEEeccccc---------c----CHHHHHHHHH------
Confidence 3678899999999999999999999999999999998 899999988777 2 4444444443
Q ss_pred cccCCceEEEeeCCCCHHHHHHHH----HcCCCEEEE
Q 015424 351 IRQKNIIVVGESGLFTPDDIAYVQ----EAGVKAVLV 383 (407)
Q Consensus 351 i~~~~v~vVAESGI~t~eD~~~l~----~~GadaVLV 383 (407)
.+.++|...|..|.+++.++. +.|..-+.+
T Consensus 112 ---tgkPvIlSTG~stl~EI~~Av~~~~~~~~~~l~l 145 (241)
T PF03102_consen 112 ---TGKPVILSTGMSTLEEIERAVEVLREAGNEDLVL 145 (241)
T ss_dssp ---T-S-EEEE-TT--HHHHHHHHHHHHHHCT--EEE
T ss_pred ---hCCcEEEECCCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 467899999999999987754 346555544
No 340
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=95.45 E-value=0.032 Score=56.75 Aligned_cols=74 Identities=18% Similarity=0.160 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHcCCcEEEEEec---------------CCcCCC------CHHHHHHHHhcCC--CCcEEeccccCCHHHH
Q 015424 198 DPVEIARSYEKGGAACLSILTD---------------EKYFKG------SFENLEAVRSAGV--KCPLLCKEFIVDAWQI 254 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd---------------~~~F~G------s~edL~~Vr~a~v--~lPVL~KDFIid~~QI 254 (407)
+..++|+..+++||++|.+..- ...+.| +++.+..+++. + ++||+.-..|.+..++
T Consensus 226 ~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~-~~~~ipIig~GGI~s~eda 304 (344)
T PRK05286 226 ELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKE-LGGRLPIIGVGGIDSAEDA 304 (344)
T ss_pred HHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHH-hCCCCCEEEECCCCCHHHH
Confidence 4789999999999999999641 112233 34577777776 6 7999999999999999
Q ss_pred HHHHHcCCCEEEEeccCC
Q 015424 255 YYARTKGADAVLLIAAVL 272 (407)
Q Consensus 255 ~eAr~~GADaVLLiaaiL 272 (407)
.+...+|||+|.+..+++
T Consensus 305 ~e~l~aGAd~V~v~~~~~ 322 (344)
T PRK05286 305 YEKIRAGASLVQIYSGLI 322 (344)
T ss_pred HHHHHcCCCHHHHHHHHH
Confidence 999999999999988765
No 341
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=95.43 E-value=0.065 Score=49.64 Aligned_cols=91 Identities=18% Similarity=0.231 Sum_probs=66.7
Q ss_pred cCCCCHHHHHHHHhcCCCCc-EEeccccCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeC---C
Q 015424 222 YFKGSFENLEAVRSAGVKCP-LLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---D 297 (407)
Q Consensus 222 ~F~Gs~edL~~Vr~a~v~lP-VL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVh---t 297 (407)
+|+|-.+-+..+|+.....+ |+.-- -+..|+.+|..+|+|.|.|.- .+++++++.++..+..+-.+.+|++ |
T Consensus 62 ~~g~i~~av~~~~~~~~~~~~I~VEv--~~~ee~~ea~~~g~d~I~lD~--~~~~~~~~~v~~l~~~~~~v~ie~SGGI~ 137 (169)
T PF01729_consen 62 FFGGIEEAVKAARQAAPEKKKIEVEV--ENLEEAEEALEAGADIIMLDN--MSPEDLKEAVEELRELNPRVKIEASGGIT 137 (169)
T ss_dssp HHSSHHHHHHHHHHHSTTTSEEEEEE--SSHHHHHHHHHTT-SEEEEES---CHHHHHHHHHHHHHHTTTSEEEEESSSS
T ss_pred HhCCHHHHHHHHHHhCCCCceEEEEc--CCHHHHHHHHHhCCCEEEecC--cCHHHHHHHHHHHhhcCCcEEEEEECCCC
Confidence 35444566677776423343 55432 346799999999999999986 4778999999998888888999997 7
Q ss_pred HHHHHHHhcccCCcEEEeec
Q 015424 298 EREMDRVLGIEGIELIGINN 317 (407)
Q Consensus 298 ~eElerAl~l~Ga~iIGINn 317 (407)
++.+....+. |+|+|++..
T Consensus 138 ~~ni~~ya~~-gvD~isvg~ 156 (169)
T PF01729_consen 138 LENIAEYAKT-GVDVISVGS 156 (169)
T ss_dssp TTTHHHHHHT-T-SEEEECH
T ss_pred HHHHHHHHhc-CCCEEEcCh
Confidence 7777777786 999999853
No 342
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=95.42 E-value=0.088 Score=49.72 Aligned_cols=77 Identities=29% Similarity=0.227 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHcCCcEEEEE----ecC--CcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccC
Q 015424 198 DPVEIARSYEKGGAACLSIL----TDE--KYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV 271 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVL----Td~--~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaai 271 (407)
++.+ +....+.|++.|.+. |.. ..+...++.++.+++. +++||+.-..|.++.++.++..+|||+|++..++
T Consensus 132 t~~e-a~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~-~~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal 209 (219)
T cd04729 132 TLEE-ALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKA-LGIPVIAEGRINSPEQAAKALELGADAVVVGSAI 209 (219)
T ss_pred CHHH-HHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHh-cCCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHH
Confidence 4433 566777899998652 111 1234467899999986 7999999888889999999999999999999887
Q ss_pred CCHHH
Q 015424 272 LPDLD 276 (407)
Q Consensus 272 L~~~~ 276 (407)
...++
T Consensus 210 ~~~~~ 214 (219)
T cd04729 210 TRPEH 214 (219)
T ss_pred hChHh
Confidence 76544
No 343
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=95.35 E-value=0.11 Score=54.11 Aligned_cols=75 Identities=20% Similarity=0.190 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHcCCcEEEE--------------------E---ecCCcCCCC------HHHHHHHHhcCC---CCcEEec
Q 015424 198 DPVEIARSYEKGGAACLSI--------------------L---TDEKYFKGS------FENLEAVRSAGV---KCPLLCK 245 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISV--------------------L---Td~~~F~Gs------~edL~~Vr~a~v---~lPVL~K 245 (407)
+..++|+..+++||++|+. + |..+.+.|. ++.+..+++. + ++||+.-
T Consensus 181 ~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~-~~~~~ipIig~ 259 (420)
T PRK08318 181 DIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARD-PETRGLPISGI 259 (420)
T ss_pred cHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhc-cccCCCCEEee
Confidence 6889999999999999993 1 112244453 4666677765 5 7999988
Q ss_pred cccCCHHHHHHHHHcCCCEEEEeccCCC
Q 015424 246 EFIVDAWQIYYARTKGADAVLLIAAVLP 273 (407)
Q Consensus 246 DFIid~~QI~eAr~~GADaVLLiaaiL~ 273 (407)
..|.+..++++...+|||+|.+..+++-
T Consensus 260 GGI~s~~da~e~i~aGA~~Vqi~ta~~~ 287 (420)
T PRK08318 260 GGIETWRDAAEFILLGAGTVQVCTAAMQ 287 (420)
T ss_pred cCcCCHHHHHHHHHhCCChheeeeeecc
Confidence 8899999999999999999999888763
No 344
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=95.29 E-value=0.063 Score=54.21 Aligned_cols=75 Identities=20% Similarity=0.244 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHcCCcEEEEEecC----------Cc-----CCC------CHHHHHHHHhcCCCCcEEeccccCCHHHHHH
Q 015424 198 DPVEIARSYEKGGAACLSILTDE----------KY-----FKG------SFENLEAVRSAGVKCPLLCKEFIVDAWQIYY 256 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~----------~~-----F~G------s~edL~~Vr~a~v~lPVL~KDFIid~~QI~e 256 (407)
+..++|+..+++||++|.+.--- .. +.| +++.+..+++. +++||+.-..|.+..++.+
T Consensus 176 ~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~-~~ipIig~GGI~s~~Da~e 254 (325)
T cd04739 176 ALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGR-VKASLAASGGVHDAEDVVK 254 (325)
T ss_pred CHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcc-cCCCEEEECCCCCHHHHHH
Confidence 78899999999999999874210 00 001 24556677775 7999999889999999999
Q ss_pred HHHcCCCEEEEeccCCC
Q 015424 257 ARTKGADAVLLIAAVLP 273 (407)
Q Consensus 257 Ar~~GADaVLLiaaiL~ 273 (407)
...+|||+|-+..+++.
T Consensus 255 ~l~aGA~~Vqv~ta~~~ 271 (325)
T cd04739 255 YLLAGADVVMTTSALLR 271 (325)
T ss_pred HHHcCCCeeEEehhhhh
Confidence 99999999999988774
No 345
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=95.26 E-value=0.17 Score=52.64 Aligned_cols=92 Identities=18% Similarity=0.281 Sum_probs=70.9
Q ss_pred CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEecc---CC--CHHHHHHHHHHHHHc--CCcEEEE--eC
Q 015424 226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA---VL--PDLDIRYMTKICKLL--GLTALVE--VH 296 (407)
Q Consensus 226 s~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa---iL--~~~~L~~Li~~a~~L--GL~aLVE--Vh 296 (407)
++++|+.+|+. .++||+.|+. .+......|..+|||+|.+--. .+ ....+..|.+....+ .+.+++. +.
T Consensus 241 tW~~i~~lr~~-~~~pvivKgV-~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr 318 (383)
T cd03332 241 TWEDLAFLREW-TDLPIVLKGI-LHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVR 318 (383)
T ss_pred CHHHHHHHHHh-cCCCEEEecC-CCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcC
Confidence 57999999986 8999999975 8888999999999999987432 22 122344566655555 3777775 67
Q ss_pred CHHHHHHHhcccCCcEEEeecccc
Q 015424 297 DEREMDRVLGIEGIELIGINNRNL 320 (407)
Q Consensus 297 t~eElerAl~l~Ga~iIGINnRdL 320 (407)
+-.++-+|+.+ ||+.+++-..=|
T Consensus 319 ~G~Dv~KALaL-GA~~v~iGr~~l 341 (383)
T cd03332 319 TGADIMKALAL-GAKAVLIGRPYA 341 (383)
T ss_pred cHHHHHHHHHc-CCCEEEEcHHHH
Confidence 99999999999 999999965544
No 346
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=95.25 E-value=0.34 Score=49.42 Aligned_cols=117 Identities=9% Similarity=0.114 Sum_probs=84.8
Q ss_pred HHHHHHHHcC--CcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEec---cC----
Q 015424 201 EIARSYEKGG--AACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA---AV---- 271 (407)
Q Consensus 201 ~iA~ay~~~G--A~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLia---ai---- 271 (407)
+.+....+.| ++.|-+-+--++-..-.+.++.+|+. .+.|.+.+.-+.+..+...+..+|||+|.... ++
T Consensus 97 ~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~-~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr 175 (321)
T TIGR01306 97 EFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTH-LPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITK 175 (321)
T ss_pred HHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHh-CCCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccce
Confidence 4555566667 67777765555555566778888886 67775555545788888889999999998651 11
Q ss_pred ------CCHHHHHHHHHHHHHcCCcEEEE--eCCHHHHHHHhcccCCcEEEeecccc
Q 015424 272 ------LPDLDIRYMTKICKLLGLTALVE--VHDEREMDRVLGIEGIELIGINNRNL 320 (407)
Q Consensus 272 ------L~~~~L~~Li~~a~~LGL~aLVE--Vht~eElerAl~l~Ga~iIGINnRdL 320 (407)
..+-++..+.+.++...+.++.. +.+-.++.+|+.+ ||+.+++- |-|
T Consensus 176 ~~~g~g~~~~~l~ai~ev~~a~~~pVIadGGIr~~~Di~KALa~-GAd~Vmig-~~~ 230 (321)
T TIGR01306 176 IKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSIRF-GASMVMIG-SLF 230 (321)
T ss_pred eeeccCCCchHHHHHHHHHHhcCCeEEEECCcCcHHHHHHHHHc-CCCEEeec-hhh
Confidence 12235677877777778777775 6799999999998 99999994 444
No 347
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=95.21 E-value=0.21 Score=51.33 Aligned_cols=114 Identities=13% Similarity=0.082 Sum_probs=85.0
Q ss_pred HHHHHHHHc--CCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEe--------cc
Q 015424 201 EIARSYEKG--GAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLI--------AA 270 (407)
Q Consensus 201 ~iA~ay~~~--GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLi--------aa 270 (407)
+.++...++ |++.|-|-+--++-..-.++++.+|+. ..-+.+.+.=|.++.+..++..+|||+|.+. .+
T Consensus 110 er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~-~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR 188 (343)
T TIGR01305 110 EKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREA-FPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTR 188 (343)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhh-CCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCc
Confidence 455556555 599999988887777788899999986 4445666666799999999999999999765 33
Q ss_pred CC---CHHHHHHHHH---HHHHcCCcEEEE--eCCHHHHHHHhcccCCcEEEee
Q 015424 271 VL---PDLDIRYMTK---ICKLLGLTALVE--VHDEREMDRVLGIEGIELIGIN 316 (407)
Q Consensus 271 iL---~~~~L~~Li~---~a~~LGL~aLVE--Vht~eElerAl~l~Ga~iIGIN 316 (407)
.+ .-.+|..+.+ .++.++..++.+ +++.-++-+|+.+ ||+.+.+-
T Consensus 189 ~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~-GAd~VMlG 241 (343)
T TIGR01305 189 TKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGA-GADFVMLG 241 (343)
T ss_pred eeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHc-CCCEEEEC
Confidence 33 1134554544 444567888886 6799999999998 99988875
No 348
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=95.20 E-value=0.048 Score=53.04 Aligned_cols=146 Identities=16% Similarity=0.129 Sum_probs=91.3
Q ss_pred CCcEEeccccCCH-----HHHHHHHHcCCCEEE-------EeccCCCH--------HHHHHHHHHHHHcCCcEEEEeCCH
Q 015424 239 KCPLLCKEFIVDA-----WQIYYARTKGADAVL-------LIAAVLPD--------LDIRYMTKICKLLGLTALVEVHDE 298 (407)
Q Consensus 239 ~lPVL~KDFIid~-----~QI~eAr~~GADaVL-------LiaaiL~~--------~~L~~Li~~a~~LGL~aLVEVht~ 298 (407)
+.||+..=-..|| .-+.+-+.+|..+|. ++-.+.-+ ..=-+|+..|+.++|-.+-=|.+.
T Consensus 87 ~tpv~aGv~~~DPf~~~~~~L~~L~~~gf~gV~NFPTv~~iDG~~R~~lEetGmG~~~Evemlr~A~~k~l~t~~yV~s~ 166 (276)
T COG5564 87 QTPVLAGVNGTDPFCRMVDFLKELKTAGFSGVQNFPTVGLIDGRMRASLEETGMGYGLEVEMLREAHAKDLLTTPYVFSF 166 (276)
T ss_pred cCcceecccCCCcchhHHHHHHHHHhcCCcccccCCeeEEecchhhhhHHHhCcchHHHHHHHHHHHhccccccceecCH
Confidence 4566644333444 455666788888763 33333211 111357888999999999999999
Q ss_pred HHHHHHhcccCCcEEEeecccc--ccccccccccccccCchhHHHHhhcccc--cccccCCceEEEeeC-CCCHHHHHHH
Q 015424 299 REMDRVLGIEGIELIGINNRNL--AISIFSYRTETFEVDNSNTKKLLEGERG--EIIRQKNIIVVGESG-LFTPDDIAYV 373 (407)
Q Consensus 299 eElerAl~l~Ga~iIGINnRdL--~~~~~~~t~~Tf~vDl~~t~~L~~~~~~--~~i~~~~v~vVAESG-I~t~eD~~~l 373 (407)
+|+..+.++ |+|||-.|. .+ -+.+. .+-...+....++.+.... ..+ .++++++++|| |.+|||.++.
T Consensus 167 ~eAqa~~~a-Gadiiv~hm-g~ttgG~Ig----ar~~~Sl~~~vel~~~~~~aar~v-~kd~i~l~~GGPi~~p~da~yi 239 (276)
T COG5564 167 EEAQAMTKA-GADIIVAHM-GLTTGGLIG----ARSALSLADCVELIELAAEAARGV-RKDVIPLCHGGPISMPEDARYI 239 (276)
T ss_pred HHHHHHHHc-Ccceeeecc-cccccceec----cccccCHHHHHHHHHHHHHHHhhh-hhceeeeccCCCcCCchhhHHH
Confidence 999999997 999986542 11 00011 1122233334444332110 012 25778888888 8999999998
Q ss_pred HHc--CCCEEEEcccccCCC
Q 015424 374 QEA--GVKAVLVGESIVKQD 391 (407)
Q Consensus 374 ~~~--GadaVLVGeaLmk~~ 391 (407)
.+. ||||+.=++++=+-+
T Consensus 240 ~d~c~~~~gfygassmerlp 259 (276)
T COG5564 240 LDRCPGCDGFYGASSMERLP 259 (276)
T ss_pred HhhCCCCCcccccchhhccc
Confidence 876 899988777765544
No 349
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=95.17 E-value=0.64 Score=46.60 Aligned_cols=142 Identities=17% Similarity=0.213 Sum_probs=98.5
Q ss_pred CCCcEE-eccccCCHHHHHHHHHcCCCEEEEeccCCCHH----HHHHHHHHHHHcCCcEEEEe-----------------
Q 015424 238 VKCPLL-CKEFIVDAWQIYYARTKGADAVLLIAAVLPDL----DIRYMTKICKLLGLTALVEV----------------- 295 (407)
Q Consensus 238 v~lPVL-~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~----~L~~Li~~a~~LGL~aLVEV----------------- 295 (407)
.++||- .-|-.-+...+..|..+|-+.|.++.+.|+.+ .-++++++||.+|+.+=.|+
T Consensus 72 ~~vPValHLDH~~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~~~~ 151 (287)
T PF01116_consen 72 ASVPVALHLDHGKDFEDIKRAIDAGFTSVMIDGSALPFEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESEEETE 151 (287)
T ss_dssp STSEEEEEEEEE-SHHHHHHHHHHTSSEEEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSSTT-T
T ss_pred cCCCEEeecccCCCHHHHHHHHHhCcccccccCCcCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCcccccccc
Confidence 578985 46766778899999999999999999999764 35678889999887763322
Q ss_pred ---CCHHHHHHHhcccCCcEEEeeccccccccccccc-cccccCchhHHHHhhcccccccccCCceEEEeeCCC-CHHHH
Q 015424 296 ---HDEREMDRVLGIEGIELIGINNRNLAISIFSYRT-ETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLF-TPDDI 370 (407)
Q Consensus 296 ---ht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~-~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~-t~eD~ 370 (407)
.+++|+.+..+..|+|.+.+.--+. || .|.. .+..+|++...++.+.++ ++++|.=||=. ..|++
T Consensus 152 ~~~TdP~~a~~Fv~~TgvD~LAvaiGt~--HG-~y~~~~~p~Ld~~~L~~I~~~~~-------~iPLVlHGgSG~~~e~~ 221 (287)
T PF01116_consen 152 SLYTDPEEAKEFVEETGVDALAVAIGTA--HG-MYKGGKKPKLDFDRLKEIREAVP-------DIPLVLHGGSGLPDEQI 221 (287)
T ss_dssp TCSSSHHHHHHHHHHHTTSEEEE-SSSB--SS-SBSSSSSTC--HHHHHHHHHHHH-------TSEEEESSCTTS-HHHH
T ss_pred ccccCHHHHHHHHHHhCCCEEEEecCcc--cc-ccCCCCCcccCHHHHHHHHHhcC-------CCCEEEECCCCCCHHHH
Confidence 2667777766545999999875444 22 2322 367789999888877631 45666654444 55699
Q ss_pred HHHHHcCCCEEEEcccccC
Q 015424 371 AYVQEAGVKAVLVGESIVK 389 (407)
Q Consensus 371 ~~l~~~GadaVLVGeaLmk 389 (407)
+++.++|+.-|=||+.+..
T Consensus 222 ~~ai~~Gi~KiNi~T~~~~ 240 (287)
T PF01116_consen 222 RKAIKNGISKINIGTELRR 240 (287)
T ss_dssp HHHHHTTEEEEEESHHHHH
T ss_pred HHHHHcCceEEEEehHHHH
Confidence 9999999999999988764
No 350
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=95.15 E-value=2.6 Score=41.99 Aligned_cols=170 Identities=12% Similarity=0.133 Sum_probs=98.2
Q ss_pred HHHHHHHHHHcCCcEEEEEec-CCcCCCCH-HHHHHHH---hc-CCCCcEEeccccCCHH----HHHHHHHcCCCEEEEe
Q 015424 199 PVEIARSYEKGGAACLSILTD-EKYFKGSF-ENLEAVR---SA-GVKCPLLCKEFIVDAW----QIYYARTKGADAVLLI 268 (407)
Q Consensus 199 p~~iA~ay~~~GA~aISVLTd-~~~F~Gs~-edL~~Vr---~a-~v~lPVL~KDFIid~~----QI~eAr~~GADaVLLi 268 (407)
..++.+.+.+.|+++|-|+.- ..|+.=|. |..+.++ +. .-++||+..=.-.+.. ....|.++|||+|+++
T Consensus 23 l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~ 102 (294)
T TIGR02313 23 LRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVI 102 (294)
T ss_pred HHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEc
Confidence 345566778899999988721 11111122 2232222 21 2368999654433333 3345678999999998
Q ss_pred ccCC---CHHH-HHHHHHHHHHc-CCcEEEE-----eC---CHHHHHHHhcccCCcEEEeeccccccccccccccccccC
Q 015424 269 AAVL---PDLD-IRYMTKICKLL-GLTALVE-----VH---DEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVD 335 (407)
Q Consensus 269 aaiL---~~~~-L~~Li~~a~~L-GL~aLVE-----Vh---t~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vD 335 (407)
.-.. ++++ +.++...+... ++.+++= ++ +.+.+.+..+- -..++|| ++-..|
T Consensus 103 pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~~-~pnv~gi--------------K~ss~d 167 (294)
T TIGR02313 103 VPYYNKPNQEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLRKD-CPNIVGA--------------KESNKD 167 (294)
T ss_pred CccCCCCCHHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHHhh-CCCEEEE--------------EeCCCC
Confidence 8754 3344 44455566666 6776543 11 46666666531 3579999 444557
Q ss_pred chhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCCh
Q 015424 336 NSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDP 393 (407)
Q Consensus 336 l~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp 393 (407)
+..+.++.... +++. .| -+|-. +.+-....+|++|++.|-+=+-++--
T Consensus 168 ~~~~~~~~~~~------~~~~-~v-~~G~d--~~~~~~l~~Ga~G~is~~~n~~P~~~ 215 (294)
T TIGR02313 168 FEHLNHLFLEA------GRDF-LL-FCGIE--LLCLPMLAIGAAGSIAATANVEPKEV 215 (294)
T ss_pred HHHHHHHHHhc------CCCe-EE-EEcch--HHHHHHHHCCCCEEEecHHhhCHHHH
Confidence 77777765431 2343 33 33432 33445568999999998765554433
No 351
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=95.11 E-value=2.6 Score=41.80 Aligned_cols=169 Identities=18% Similarity=0.150 Sum_probs=96.6
Q ss_pred HHHHHHHHHHcCCcEEEEEe-cCCcCCCCHH-HHHHHH---hc-CCCCcEEeccccCCHH----HHHHHHHcCCCEEEEe
Q 015424 199 PVEIARSYEKGGAACLSILT-DEKYFKGSFE-NLEAVR---SA-GVKCPLLCKEFIVDAW----QIYYARTKGADAVLLI 268 (407)
Q Consensus 199 p~~iA~ay~~~GA~aISVLT-d~~~F~Gs~e-dL~~Vr---~a-~v~lPVL~KDFIid~~----QI~eAr~~GADaVLLi 268 (407)
..++++.+.+.|+++|-|+- -..|+.=|.+ ..+.++ +. .-++||+..=.- +.. .+..|..+|||++++.
T Consensus 23 l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~ 101 (289)
T cd00951 23 YRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLL 101 (289)
T ss_pred HHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEEC
Confidence 34466778899999999872 1222222332 222222 22 136899964332 333 2344678999999998
Q ss_pred ccCC---CHHHH-HHHHHHHHHcCCcEEEEe-----CCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhH
Q 015424 269 AAVL---PDLDI-RYMTKICKLLGLTALVEV-----HDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNT 339 (407)
Q Consensus 269 aaiL---~~~~L-~~Li~~a~~LGL~aLVEV-----ht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t 339 (407)
.-.. +++.+ +++-..+...++.+++=- =+.+.+.+..+. -..++|| ++-.-|+...
T Consensus 102 pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~~-~pnivgi--------------Kds~~d~~~~ 166 (289)
T cd00951 102 PPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNRANAVLTADSLARLAER-CPNLVGF--------------KDGVGDIELM 166 (289)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHhc-CCCEEEE--------------EeCCCCHHHH
Confidence 7644 44444 344455555677665431 145566655551 3579999 4334577777
Q ss_pred HHHhhcccccccccCCceEEEeeCCCCHHH-HHHHHHcCCCEEEEcccccCCC
Q 015424 340 KKLLEGERGEIIRQKNIIVVGESGLFTPDD-IAYVQEAGVKAVLVGESIVKQD 391 (407)
Q Consensus 340 ~~L~~~~~~~~i~~~~v~vVAESGI~t~eD-~~~l~~~GadaVLVGeaLmk~~ 391 (407)
.+++... +++. . .-+|-.+-++ +-....+|++|++-|-+=+-++
T Consensus 167 ~~~~~~~------~~~~-~-v~~G~~~~d~~~~~~l~~Ga~G~is~~~n~~P~ 211 (289)
T cd00951 167 RRIVAKL------GDRL-L-YLGGLPTAEVFALAYLAMGVPTYSSAVFNFVPE 211 (289)
T ss_pred HHHHHhc------CCCe-E-EEeCCCcchHhHHHHHHCCCCEEEechhhhhHH
Confidence 7775531 2232 2 3444433333 4566789999999886655433
No 352
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=95.08 E-value=1.9 Score=44.48 Aligned_cols=146 Identities=12% Similarity=0.004 Sum_probs=93.1
Q ss_pred CCCcEE-eccccCC-------------HHHHHHHHHcCCCEEEEeccCCCHH----HHHHHHHHHHHcCCcEEEE-----
Q 015424 238 VKCPLL-CKEFIVD-------------AWQIYYARTKGADAVLLIAAVLPDL----DIRYMTKICKLLGLTALVE----- 294 (407)
Q Consensus 238 v~lPVL-~KDFIid-------------~~QI~eAr~~GADaVLLiaaiL~~~----~L~~Li~~a~~LGL~aLVE----- 294 (407)
.++||- .-|-..+ ...+.++...|-+.|.++.+.|+-+ .-++++++||.+|+.+=.|
T Consensus 86 ~~VPValHLDHg~~~~~~~~~~~~~a~~~~~~~a~~~GftSVMiDgS~lp~eENI~~TkevVe~Ah~~gvsVEaElG~ig 165 (345)
T cd00946 86 YGVPVVLHTDHCAKKLLPWFDGLLEADEEYFKQHGEPLFSSHMLDLSEEPLEENIEICKKYLERMAKINMWLEMEIGITG 165 (345)
T ss_pred CCCCEEEECCCCCCccchhhHHHHHHHHHHHHHhccCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccC
Confidence 477864 4454444 2234455688999999999999754 3566888899887776211
Q ss_pred ----------------eCCHHHHHHHhccc----CCcEEEeeccccccccccccc-cccccCchhHHHHhhcccccccc-
Q 015424 295 ----------------VHDEREMDRVLGIE----GIELIGINNRNLAISIFSYRT-ETFEVDNSNTKKLLEGERGEIIR- 352 (407)
Q Consensus 295 ----------------Vht~eElerAl~l~----Ga~iIGINnRdL~~~~~~~t~-~Tf~vDl~~t~~L~~~~~~~~i~- 352 (407)
-.+.+|+.+..+.. |.+.+.+..=+. =|.-+ .+...|++...++.+.++.. +.
T Consensus 166 g~ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~tgvD~LAvaiGt~----HG~Y~~~~p~L~~~~L~~I~~~i~~~-~~~ 240 (345)
T cd00946 166 GEEDGVDNSGVDNAELYTQPEDVWYVYEALSKISPNFSIAAAFGNV----HGVYKPGNVKLQPEILGEHQDYVREK-LGL 240 (345)
T ss_pred CcccCcccccccccccCCCHHHHHHHHHHhccCCCceeeeeecccc----ccCCCCCCCccCHHHHHHHHHHHHHh-hcc
Confidence 24677777776532 567776653222 22222 35678888888874431111 10
Q ss_pred --cCCceEE--EeeCCCCHHHHHHHHHcCCCEEEEcccccC
Q 015424 353 --QKNIIVV--GESGLFTPDDIAYVQEAGVKAVLVGESIVK 389 (407)
Q Consensus 353 --~~~v~vV--AESGI~t~eD~~~l~~~GadaVLVGeaLmk 389 (407)
+.++++| ..||+ +.+|++++.++|+.-|=|++.+..
T Consensus 241 ~~~~~ipLVLHGgSG~-~~e~i~kai~~GI~KiNi~T~l~~ 280 (345)
T cd00946 241 ADDKPLYFVFHGGSGS-TKEEIREAISYGVVKMNIDTDTQW 280 (345)
T ss_pred ccCCCCCEEEeCCCCC-CHHHHHHHHHcCCeeEEeCcHHHH
Confidence 0134444 46666 678999999999999999988754
No 353
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=94.98 E-value=0.26 Score=45.74 Aligned_cols=87 Identities=20% Similarity=0.168 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHcCCcEEEEEec---CCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCCH
Q 015424 198 DPVEIARSYEKGGAACLSILTD---EKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPD 274 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd---~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~ 274 (407)
++.+.++.+.+.|++.+.+-+- ..|-...++.++.+++. .+.|.+.=+..+.+..+.+...+|||+|.++.++...
T Consensus 114 t~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~-~~~~~i~v~GGI~~~n~~~~~~~Ga~~v~vGsai~~~ 192 (206)
T TIGR03128 114 DKVKRAKELKELGADYIGVHTGLDEQAKGQNPFEDLQTILKL-VKEARVAVAGGINLDTIPDVIKLGPDIVIVGGAITKA 192 (206)
T ss_pred ChHHHHHHHHHcCCCEEEEcCCcCcccCCCCCHHHHHHHHHh-cCCCcEEEECCcCHHHHHHHHHcCCCEEEEeehhcCC
Confidence 4666777777779999987421 11222366778888865 4445555456678888999999999999999998865
Q ss_pred HHHHHHHHHHH
Q 015424 275 LDIRYMTKICK 285 (407)
Q Consensus 275 ~~L~~Li~~a~ 285 (407)
++..+.++..+
T Consensus 193 ~d~~~~~~~l~ 203 (206)
T TIGR03128 193 ADPAEAARQIR 203 (206)
T ss_pred CCHHHHHHHHH
Confidence 55555555443
No 354
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=94.91 E-value=0.44 Score=47.60 Aligned_cols=141 Identities=10% Similarity=0.129 Sum_probs=95.6
Q ss_pred CCCccHHHHHHhhhhcCCCceEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEE--ecC-------CcCCC---
Q 015424 158 PPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSIL--TDE-------KYFKG--- 225 (407)
Q Consensus 158 ~~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVL--Td~-------~~F~G--- 225 (407)
..++.|.+++++.. .+. .|+-=.|..|-- ..+++.....|....|.+ .|. -.|-|
T Consensus 107 T~T~~~V~~~~~~~---~~~-~I~~TRKT~Pg~---------R~l~k~Av~~GGg~~HR~gLsd~ilikdnHi~~~g~~~ 173 (277)
T TIGR01334 107 TYTHKMVTLAKKIS---PMA-VVACTRKAIPLT---------RPLAVKAVLAAGGVIHRIGLSETLLVFANHRTFLNDNF 173 (277)
T ss_pred HHHHHHHHHHHhcC---CCC-EEEecCCCCCCh---------hHHHHHHHHhCCCcCeecCCchhheehHHHHHHhCCcc
Confidence 45688999998642 233 444444444532 246666677677777777 444 12333
Q ss_pred CH-HHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHH
Q 015424 226 SF-ENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREM 301 (407)
Q Consensus 226 s~-edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVh---t~eEl 301 (407)
++ +-++.+|+.....+|.. +. .+..|+.+|..+|||.|+|. -++++++++.++..++.+..+.+|++ |++.+
T Consensus 174 ~i~~av~~~r~~~~~~kIeV-Ev-~tleea~ea~~~GaDiI~lD--n~~~e~l~~~v~~l~~~~~~~~leasGGI~~~ni 249 (277)
T TIGR01334 174 DWGGAIGRLKQTAPERKITV-EA-DTIEQALTVLQASPDILQLD--KFTPQQLHHLHERLKFFDHIPTLAAAGGINPENI 249 (277)
T ss_pred cHHHHHHHHHHhCCCCCEEE-EC-CCHHHHHHHHHcCcCEEEEC--CCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHH
Confidence 33 44666665312233221 11 36789999999999999998 47888999999988777888899998 88888
Q ss_pred HHHhcccCCcEEEee
Q 015424 302 DRVLGIEGIELIGIN 316 (407)
Q Consensus 302 erAl~l~Ga~iIGIN 316 (407)
...... |+++|.+.
T Consensus 250 ~~ya~~-GvD~is~g 263 (277)
T TIGR01334 250 ADYIEA-GIDLFITS 263 (277)
T ss_pred HHHHhc-CCCEEEeC
Confidence 888886 99998763
No 355
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=94.90 E-value=2.8 Score=41.31 Aligned_cols=165 Identities=13% Similarity=0.109 Sum_probs=94.7
Q ss_pred HHHHHHHHHcCCcEEEEE-ecCCcCCCCH-HHHHHHH---h-cCCCCcEEeccccCCHH----HHHHHHHcCCCEEEEec
Q 015424 200 VEIARSYEKGGAACLSIL-TDEKYFKGSF-ENLEAVR---S-AGVKCPLLCKEFIVDAW----QIYYARTKGADAVLLIA 269 (407)
Q Consensus 200 ~~iA~ay~~~GA~aISVL-Td~~~F~Gs~-edL~~Vr---~-a~v~lPVL~KDFIid~~----QI~eAr~~GADaVLLia 269 (407)
.++.+.+.+.|+.+|-++ |-..++.=+. |..+.++ + ..-++||+..=.-.+.. +...|..+|||+|+++.
T Consensus 22 ~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~p 101 (285)
T TIGR00674 22 EKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVT 101 (285)
T ss_pred HHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcC
Confidence 345566678899999987 2222222222 2222222 2 12368998542212222 44557789999999986
Q ss_pred cCC---CHHHH-HHHHHHHHHcCCcEEEE-----e---CCHHHHHHHhcccCCcEEEeeccccccccccccccccccCch
Q 015424 270 AVL---PDLDI-RYMTKICKLLGLTALVE-----V---HDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNS 337 (407)
Q Consensus 270 aiL---~~~~L-~~Li~~a~~LGL~aLVE-----V---ht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~ 337 (407)
-.. +++++ .++.+.+...++.+++= . =+.+.+++..+. ..++|| ++-..|+.
T Consensus 102 P~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~--~~v~gi--------------K~s~~d~~ 165 (285)
T TIGR00674 102 PYYNKPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPETVKRLAEE--PNIVAI--------------KEATGNLE 165 (285)
T ss_pred CcCCCCCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHHcC--CCEEEE--------------EeCCCCHH
Confidence 633 45554 44555566677776543 1 145566666654 469999 44445666
Q ss_pred hHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015424 338 NTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 390 (407)
Q Consensus 338 ~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~ 390 (407)
...++.... ++++.+ . +|-. +.+.....+|++|.+.|.+-+-+
T Consensus 166 ~~~~l~~~~------~~~~~v-~-~G~d--~~~~~~~~~G~~G~i~~~~~~~P 208 (285)
T TIGR00674 166 RISEIKAIA------PDDFVV-L-SGDD--ALTLPMMALGGKGVISVTANVAP 208 (285)
T ss_pred HHHHHHHhc------CCCeEE-E-ECch--HHHHHHHHcCCCEEEehHHHhhH
Confidence 666775431 223333 2 3322 33455678999999988775543
No 356
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=94.87 E-value=0.35 Score=49.90 Aligned_cols=130 Identities=15% Similarity=0.193 Sum_probs=92.2
Q ss_pred CCceEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHH
Q 015424 175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQI 254 (407)
Q Consensus 175 ~~~~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI 254 (407)
+++.|-+-+- . ..+-.+.++...++|++.|-|-+--.+-..-.+.++.+|+...++||+... +.+..+.
T Consensus 95 ~~l~V~aavg-------~---~~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGN-V~T~e~a 163 (352)
T PF00478_consen 95 GRLLVAAAVG-------T---RDDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGN-VVTYEGA 163 (352)
T ss_dssp SCBCEEEEEE-------S---STCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEE-E-SHHHH
T ss_pred ccceEEEEec-------C---CHHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEecc-cCCHHHH
Confidence 5667777762 1 225678899999999999988665554444556788888764469999888 6888888
Q ss_pred HHHHHcCCCEEEEecc---CC----------CH-HHHHHHHHHHHHcCCcEEEE--eCCHHHHHHHhcccCCcEEEee
Q 015424 255 YYARTKGADAVLLIAA---VL----------PD-LDIRYMTKICKLLGLTALVE--VHDEREMDRVLGIEGIELIGIN 316 (407)
Q Consensus 255 ~eAr~~GADaVLLiaa---iL----------~~-~~L~~Li~~a~~LGL~aLVE--Vht~eElerAl~l~Ga~iIGIN 316 (407)
.....+|||+|..+.- +- +. .-+.+..+.++.++..++.+ +++.-++-+|+.+ ||+.|.+-
T Consensus 164 ~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~-GAd~VMlG 240 (352)
T PF00478_consen 164 KDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAA-GADAVMLG 240 (352)
T ss_dssp HHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHT-T-SEEEES
T ss_pred HHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeeee-cccceeec
Confidence 8888999999999732 22 22 12344555666789999998 7899999999998 99999884
No 357
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=94.82 E-value=0.55 Score=43.54 Aligned_cols=114 Identities=19% Similarity=0.181 Sum_probs=71.8
Q ss_pred CcEEeccccCCHHHHHH-HHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEE---EeCCHHHHHHHhcccCCcEEEe
Q 015424 240 CPLLCKEFIVDAWQIYY-ARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALV---EVHDEREMDRVLGIEGIELIGI 315 (407)
Q Consensus 240 lPVL~KDFIid~~QI~e-Ar~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLV---EVht~eElerAl~l~Ga~iIGI 315 (407)
+||++.+-.-+..++.+ +...|++.|-+-.+- +..++.+-...+.++ ++.+ -|+|.++++.++.+ |++.|-.
T Consensus 7 ~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~--~~~~~~i~~l~~~~~-~~~iGag~v~~~~~~~~a~~~-Ga~~i~~ 82 (190)
T cd00452 7 VAVLRGDDAEDALALAEALIEGGIRAIEITLRT--PGALEAIRALRKEFP-EALIGAGTVLTPEQADAAIAA-GAQFIVS 82 (190)
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCC--hhHHHHHHHHHHHCC-CCEEEEEeCCCHHHHHHHHHc-CCCEEEc
Confidence 67887764333334444 567899998887653 334444545555555 3222 57999999999998 9998743
Q ss_pred eccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEc
Q 015424 316 NNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVG 384 (407)
Q Consensus 316 NnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVG 384 (407)
-.. |.+. .+..+. .+..++ -|+.|++++.++.++|+|-+-+-
T Consensus 83 p~~----------------~~~~-~~~~~~--------~~~~~i--~gv~t~~e~~~A~~~Gad~i~~~ 124 (190)
T cd00452 83 PGL----------------DPEV-VKAANR--------AGIPLL--PGVATPTEIMQALELGADIVKLF 124 (190)
T ss_pred CCC----------------CHHH-HHHHHH--------cCCcEE--CCcCCHHHHHHHHHCCCCEEEEc
Confidence 211 1111 111221 122333 38899999999999999999874
No 358
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=94.81 E-value=0.059 Score=51.71 Aligned_cols=97 Identities=16% Similarity=0.228 Sum_probs=64.0
Q ss_pred EEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHH
Q 015424 292 LVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIA 371 (407)
Q Consensus 292 LVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~ 371 (407)
.+...|+.++-+.....|++-+=|-.-|-+- +.-..+++...++.+. ..+++-.-|||++.+|++
T Consensus 25 ~~~~~dP~~~a~~~~~~g~~~l~ivDLdaa~-------~g~~~n~~~i~~i~~~--------~~~~i~vgGGIrs~ed~~ 89 (229)
T PF00977_consen 25 TVYSGDPVEVAKAFNEQGADELHIVDLDAAK-------EGRGSNLELIKEIAKE--------TGIPIQVGGGIRSIEDAE 89 (229)
T ss_dssp ECECCCHHHHHHHHHHTT-SEEEEEEHHHHC-------CTHHHHHHHHHHHHHH--------SSSEEEEESSE-SHHHHH
T ss_pred eEECcCHHHHHHHHHHcCCCEEEEEEccCcc-------cCchhHHHHHHHHHhc--------CCccEEEeCccCcHHHHH
Confidence 4455666666666644577766653222100 1122345555666554 247899999999999999
Q ss_pred HHHHcCCCEEEEcccccCCCChHHHHHhhhcC
Q 015424 372 YVQEAGVKAVLVGESIVKQDDPGKGITGLFGK 403 (407)
Q Consensus 372 ~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~~ 403 (407)
++.++||+.|+||++.++.++..+.+.+-++.
T Consensus 90 ~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~ 121 (229)
T PF00977_consen 90 RLLDAGADRVVIGTEALEDPELLEELAERYGS 121 (229)
T ss_dssp HHHHTT-SEEEESHHHHHCCHHHHHHHHHHGG
T ss_pred HHHHhCCCEEEeChHHhhchhHHHHHHHHcCc
Confidence 99999999999999999988877777666554
No 359
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=94.81 E-value=0.24 Score=45.63 Aligned_cols=82 Identities=18% Similarity=0.098 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHcCCcEEEEE--ecCCcC--CCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCC
Q 015424 197 FDPVEIARSYEKGGAACLSIL--TDEKYF--KGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (407)
Q Consensus 197 ~dp~~iA~ay~~~GA~aISVL--Td~~~F--~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (407)
.++.+..+ +.+.|++.+.+. .+...| ..+.+.++.+++. .++||+.-..| .+.++.++..+|||++.++.++.
T Consensus 114 ~t~~e~~~-~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~GGI-~~~~i~~~~~~Gad~vvvGsai~ 190 (202)
T cd04726 114 EDPEKRAK-LLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKL-LGVKVAVAGGI-TPDTLPEFKKAGADIVIVGRAIT 190 (202)
T ss_pred CCHHHHHH-HHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhh-cCCCEEEECCc-CHHHHHHHHhcCCCEEEEeehhc
Confidence 36667766 666789987762 223344 3467888888875 67898876665 69999999999999999999887
Q ss_pred CHHHHHHHH
Q 015424 273 PDLDIRYMT 281 (407)
Q Consensus 273 ~~~~L~~Li 281 (407)
..++..+.+
T Consensus 191 ~~~d~~~~~ 199 (202)
T cd04726 191 GAADPAEAA 199 (202)
T ss_pred CCCCHHHHH
Confidence 655554433
No 360
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=94.78 E-value=0.19 Score=48.41 Aligned_cols=95 Identities=16% Similarity=0.144 Sum_probs=70.8
Q ss_pred CceEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEEecCCcCC---CCHHHHHHHHhcCCCCcEEeccccCCHH
Q 015424 176 LPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFK---GSFENLEAVRSAGVKCPLLCKEFIVDAW 252 (407)
Q Consensus 176 ~~~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVLTd~~~F~---Gs~edL~~Vr~a~v~lPVL~KDFIid~~ 252 (407)
++.+=..+|...-- .-....+|.++++.|.+. +..+.+++-..-.. -+++.++.+.+. +++||+.-..|.+..
T Consensus 127 ~iivslD~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~li~~di~~~G~~~g~~~~~~~~i~~~-~~ipvi~~GGi~s~e 202 (233)
T cd04723 127 RLVLSLDFRGGQLL--KPTDFIGPEELLRRLAKW-PEELIVLDIDRVGSGQGPDLELLERLAAR-ADIPVIAAGGVRSVE 202 (233)
T ss_pred CeEEEEeccCCeec--cccCcCCHHHHHHHHHHh-CCeEEEEEcCccccCCCcCHHHHHHHHHh-cCCCEEEeCCCCCHH
Confidence 44555566543110 113456899999999999 99999875543322 246677777776 799999999999999
Q ss_pred HHHHHHHcCCCEEEEeccCCCH
Q 015424 253 QIYYARTKGADAVLLIAAVLPD 274 (407)
Q Consensus 253 QI~eAr~~GADaVLLiaaiL~~ 274 (407)
++.++..+||++|++..++...
T Consensus 203 di~~l~~~G~~~vivGsal~~g 224 (233)
T cd04723 203 DLELLKKLGASGALVASALHDG 224 (233)
T ss_pred HHHHHHHcCCCEEEEehHHHcC
Confidence 9999999999999998876643
No 361
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=94.68 E-value=0.12 Score=51.12 Aligned_cols=82 Identities=15% Similarity=0.061 Sum_probs=58.2
Q ss_pred HHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcC
Q 015424 298 EREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAG 377 (407)
Q Consensus 298 ~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~G 377 (407)
.+-+++..+. ||+.|=+- || ... |.+...++++. .++.+...|||++ ++++.+.++|
T Consensus 41 ~~~A~~~~~~-Ga~~lHvV--DL---------g~~--n~~~i~~i~~~--------~~~~v~vGGGIr~-e~v~~~l~aG 97 (253)
T TIGR02129 41 SYYAKLYKDD-GVKGCHVI--ML---------GPN--NDDAAKEALHA--------YPGGLQVGGGIND-TNAQEWLDEG 97 (253)
T ss_pred HHHHHHHHHc-CCCEEEEE--EC---------CCC--cHHHHHHHHHh--------CCCCEEEeCCcCH-HHHHHHHHcC
Confidence 3444555554 88877663 55 222 55566667654 3578999999997 9999999999
Q ss_pred CCEEEEcccccCC----CChHHHHHhhhc
Q 015424 378 VKAVLVGESIVKQ----DDPGKGITGLFG 402 (407)
Q Consensus 378 adaVLVGeaLmk~----~dp~~~i~~L~~ 402 (407)
|+.|.||+++++. ++..+.+.+.+|
T Consensus 98 a~rVvIGS~av~~~~i~~~~~~~i~~~fG 126 (253)
T TIGR02129 98 ASHVIVTSWLFTKGKFDLKRLKEIVSLVG 126 (253)
T ss_pred CCEEEECcHHHhCCCCCHHHHHHHHHHhC
Confidence 9999999999886 334455555553
No 362
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=94.67 E-value=0.15 Score=51.60 Aligned_cols=79 Identities=9% Similarity=0.019 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHcCCcEEEEEecC---CcCCC---------CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEE
Q 015424 198 DPVEIARSYEKGGAACLSILTDE---KYFKG---------SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAV 265 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~---~~F~G---------s~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaV 265 (407)
+..++++.++++|+++|.|-.-. +.+.| .++.+.++++...++||+..+-|.+..++.+... |||+|
T Consensus 142 ~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgV 220 (318)
T TIGR00742 142 FLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGV 220 (318)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEE
Confidence 55688999999999999887543 23444 4566777777523899998888899999888775 99999
Q ss_pred EEeccCCCHHHH
Q 015424 266 LLIAAVLPDLDI 277 (407)
Q Consensus 266 LLiaaiL~~~~L 277 (407)
.+.-.+|.+..+
T Consensus 221 MigRgal~nP~i 232 (318)
T TIGR00742 221 MVGREAYENPYL 232 (318)
T ss_pred EECHHHHhCCHH
Confidence 998888876555
No 363
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.99 Score=46.47 Aligned_cols=114 Identities=19% Similarity=0.247 Sum_probs=82.1
Q ss_pred CHHHHHHHHHcCCCEEEEecc---------CCCHHHHHHHHHHHHHcCCcEEEEeCC----------HHHHHHHhcccCC
Q 015424 250 DAWQIYYARTKGADAVLLIAA---------VLPDLDIRYMTKICKLLGLTALVEVHD----------EREMDRVLGIEGI 310 (407)
Q Consensus 250 d~~QI~eAr~~GADaVLLiaa---------iL~~~~L~~Li~~a~~LGL~aLVEVht----------~eElerAl~l~Ga 310 (407)
+..+++.|.++|||+|-++-. -++.++|++.+++||+.|....|=+.+ .+.++++.++ |+
T Consensus 15 ~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~-Gv 93 (347)
T COG0826 15 NLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVEL-GV 93 (347)
T ss_pred CHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHc-CC
Confidence 345788899999999999855 257889999999999999988776653 3456666776 88
Q ss_pred cEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccc
Q 015424 311 ELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESI 387 (407)
Q Consensus 311 ~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaL 387 (407)
|-|=++ |+ .. ..++... .++-.+.+=...-+.+.+.++...+.|+..++.-..|
T Consensus 94 Daviv~--Dp----------------g~-i~l~~e~----~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~rEl 147 (347)
T COG0826 94 DAVIVA--DP----------------GL-IMLARER----GPDLPIHVSTQANVTNAETAKFWKELGAKRVVLPREL 147 (347)
T ss_pred CEEEEc--CH----------------HH-HHHHHHh----CCCCcEEEeeeEecCCHHHHHHHHHcCCEEEEeCccC
Confidence 877664 22 22 3444321 1122456667788999999999999998877765443
No 364
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=94.65 E-value=4.5 Score=40.39 Aligned_cols=169 Identities=18% Similarity=0.165 Sum_probs=97.3
Q ss_pred HHHHHHHHHcCCcEEEEEe-cCCcCCCCHH----HHHHHHhc-CCCCcEEeccccCCHH----HHHHHHHcCCCEEEEec
Q 015424 200 VEIARSYEKGGAACLSILT-DEKYFKGSFE----NLEAVRSA-GVKCPLLCKEFIVDAW----QIYYARTKGADAVLLIA 269 (407)
Q Consensus 200 ~~iA~ay~~~GA~aISVLT-d~~~F~Gs~e----dL~~Vr~a-~v~lPVL~KDFIid~~----QI~eAr~~GADaVLLia 269 (407)
.++.+.+.+.|+++|-++- -..|+.=+.+ -++.+++. .-++||++.=.- ... ++..|..+|||+|+++.
T Consensus 31 ~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~~p 109 (303)
T PRK03620 31 REHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAAERAGADGILLLP 109 (303)
T ss_pred HHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEECC
Confidence 4456667889999998872 1222222222 22323332 236899964322 232 23446789999999987
Q ss_pred cCC---CHHHH-HHHHHHHHHcCCcEEEEe-----CCHHHHHHHh-cccCCcEEEeeccccccccccccccccccCchhH
Q 015424 270 AVL---PDLDI-RYMTKICKLLGLTALVEV-----HDEREMDRVL-GIEGIELIGINNRNLAISIFSYRTETFEVDNSNT 339 (407)
Q Consensus 270 aiL---~~~~L-~~Li~~a~~LGL~aLVEV-----ht~eElerAl-~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t 339 (407)
-.. +++.+ .++...+...++.+++=- -+.+.+.+.. +. ..++|| ++-..|+...
T Consensus 110 P~y~~~~~~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~~L~~~~--pni~gi--------------K~s~~d~~~~ 173 (303)
T PRK03620 110 PYLTEAPQEGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARLAERC--PNLVGF--------------KDGVGDIELM 173 (303)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHhhC--CCEEEE--------------EeCCCCHHHH
Confidence 754 44444 445555666677765421 1455666665 43 479999 4445577777
Q ss_pred HHHhhcccccccccCCceEEEeeCCCCHHH-HHHHHHcCCCEEEEcccccCCCCh
Q 015424 340 KKLLEGERGEIIRQKNIIVVGESGLFTPDD-IAYVQEAGVKAVLVGESIVKQDDP 393 (407)
Q Consensus 340 ~~L~~~~~~~~i~~~~v~vVAESGI~t~eD-~~~l~~~GadaVLVGeaLmk~~dp 393 (407)
.+++... +++..++ +|..+-+. +-.+..+|++|.+.|.+-+-++-.
T Consensus 174 ~~~~~~~------~~~f~vl--~G~d~~e~~~~~~~~~G~~G~is~~an~~P~~~ 220 (303)
T PRK03620 174 QRIVRAL------GDRLLYL--GGLPTAEVFAAAYLALGVPTYSSAVFNFVPEIA 220 (303)
T ss_pred HHHHHHc------CCCeEEE--eCCCcchhhHHHHHhCCCCEEEecHHhhhHHHH
Confidence 7776542 2343332 45432222 334567899999988766544433
No 365
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=94.58 E-value=0.2 Score=48.79 Aligned_cols=119 Identities=17% Similarity=0.224 Sum_probs=86.2
Q ss_pred ccHHHHHHhhhhcCCCceEEEEecccC-CCcCCCC-CCCCHHHHHHHHHHcCCcEEEEE---ecCCcCCCCHHHHHHHHh
Q 015424 161 RDFIGALMAANQRTGLPALIAEVKKAS-PSRGILR-EDFDPVEIARSYEKGGAACLSIL---TDEKYFKGSFENLEAVRS 235 (407)
Q Consensus 161 ~~f~~aL~~~~~~~~~~~vIAEvKraS-PSkG~i~-~~~dp~~iA~ay~~~GA~aISVL---Td~~~F~Gs~edL~~Vr~ 235 (407)
.+|...+.+ . ..+..+=..+|+-. -+.|+.. ...+|.++++.+++.|+..|=+. .|...-+-+++.++.+++
T Consensus 109 p~~l~~~~~-~--~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G~d~el~~~l~~ 185 (241)
T PRK14114 109 PSFLKFLKE-I--DVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTRKIAI 185 (241)
T ss_pred HHHHHHHHH-h--CCCEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhcCCCEEEEEeechhhcCCCcCHHHHHHHHH
Confidence 356766643 2 24566666776542 2345544 57799999999999999887654 445555568899999998
Q ss_pred cCCCCcEEeccccCCHHHHHHHHHc-----C-CCEEEEeccCCCH-HHHHHHHHH
Q 015424 236 AGVKCPLLCKEFIVDAWQIYYARTK-----G-ADAVLLIAAVLPD-LDIRYMTKI 283 (407)
Q Consensus 236 a~v~lPVL~KDFIid~~QI~eAr~~-----G-ADaVLLiaaiL~~-~~L~~Li~~ 283 (407)
. +++||+.-..+-+...+.++... | ++++++..++.+. -+++++.++
T Consensus 186 ~-~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al~~g~i~~~e~~~~ 239 (241)
T PRK14114 186 E-AEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAFLEGILTVEVMKRY 239 (241)
T ss_pred H-CCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHHHCCCCCHHHHHHh
Confidence 6 89999999999999999998876 6 9999998887644 234444443
No 366
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=94.58 E-value=0.26 Score=50.84 Aligned_cols=112 Identities=20% Similarity=0.147 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHcC---CcEEEEeC--CHHHHHHHhcccCCcEEEeecc---ccccc----c---ccccccccccCchhHH
Q 015424 276 DIRYMTKICKLLG---LTALVEVH--DEREMDRVLGIEGIELIGINNR---NLAIS----I---FSYRTETFEVDNSNTK 340 (407)
Q Consensus 276 ~L~~Li~~a~~LG---L~aLVEVh--t~eElerAl~l~Ga~iIGINnR---dL~~~----~---~~~t~~Tf~vDl~~t~ 340 (407)
.++.+..+.+.+- +.++|+.+ +.+++..+++.-|.++.||-.- |+..- . .++. ....+..+...
T Consensus 189 ~~~A~~a~~~~~Pe~~~ivlVD~~~d~~~~al~~a~~~g~~l~gVRlDs~gdl~DK~~~~~~~~~~~~-~~~G~~~~l~~ 267 (352)
T PRK07188 189 VVEACKAYHKTFPEDELIALVDYNNDVITDSLKVAREFGDKLKGVRVDTSKNMIDKYFIRHPEVLGTF-DPRGVNPELIK 267 (352)
T ss_pred HHHHHHHHHHHCCCCCeEEEEecCcccHHHHHHHHHHhCCCccEEEeCCcchHhhhhccccccccccc-ccccccHHHHH
Confidence 3455555555542 34444432 7777777776338889777110 00000 0 0000 11224555566
Q ss_pred HHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcC--CCEEEEcccccCCC
Q 015424 341 KLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAG--VKAVLVGESIVKQD 391 (407)
Q Consensus 341 ~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~G--adaVLVGeaLmk~~ 391 (407)
++.+.+....+ +++.+++.||| +.+.++.+.+.| +|++=||++|...+
T Consensus 268 ~vr~~Ld~~g~--~~vkI~aSgGi-ne~~I~~~~~~g~piD~~GVGt~l~~~~ 317 (352)
T PRK07188 268 ALRKALDENGG--KHVKIIVSSGF-DAKKIREFEAQNVPVDIYGVGSSLLKIN 317 (352)
T ss_pred HHHHHHhhCCC--CCcEEEEeCCC-CHHHHHHHHHcCCCccEEecCcccccCc
Confidence 66554322212 46789999999 899999999999 79999999999974
No 367
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=94.57 E-value=0.27 Score=50.01 Aligned_cols=45 Identities=16% Similarity=0.204 Sum_probs=41.2
Q ss_pred CceEEEeeCCCCHHHHHHHHHcC-CCEEEEcccccCCCChHHHHHh
Q 015424 355 NIIVVGESGLFTPDDIAYVQEAG-VKAVLVGESIVKQDDPGKGITG 399 (407)
Q Consensus 355 ~v~vVAESGI~t~eD~~~l~~~G-adaVLVGeaLmk~~dp~~~i~~ 399 (407)
++++++-|+|.++++++.+.+.| +|.|-+|.+++..++...++++
T Consensus 276 ~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~~~~k~~~ 321 (353)
T cd02930 276 DIPVIASNRINTPEVAERLLADGDADMVSMARPFLADPDFVAKAAA 321 (353)
T ss_pred CCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHCccHHHHHHh
Confidence 57899999999999999999987 9999999999999998877765
No 368
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=94.53 E-value=0.29 Score=49.22 Aligned_cols=87 Identities=18% Similarity=0.284 Sum_probs=63.0
Q ss_pred CCCHHHHHHHHhcCCCCcEE--eccccCCHHHHHHHHHcCCCEEEEeccCCC---H-HHHHHHHHHHHHcCCcEEEEeCC
Q 015424 224 KGSFENLEAVRSAGVKCPLL--CKEFIVDAWQIYYARTKGADAVLLIAAVLP---D-LDIRYMTKICKLLGLTALVEVHD 297 (407)
Q Consensus 224 ~Gs~edL~~Vr~a~v~lPVL--~KDFIid~~QI~eAr~~GADaVLLiaaiL~---~-~~L~~Li~~a~~LGL~aLVEVht 297 (407)
+-+++.|+.+++. .++||+ +=..|-+|.++.++..+|||+|.++.+++. + ...+.|.+..+.+ .|
T Consensus 189 ~~~~elL~ei~~~-~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~~--------~~ 259 (293)
T PRK04180 189 QAPYELVKEVAEL-GRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTHY--------DD 259 (293)
T ss_pred CCCHHHHHHHHHh-CCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHHc--------CC
Confidence 4578899999886 789998 878788999999999999999999999972 2 2344455544443 34
Q ss_pred HHHHHHHh-cccCCcEEEeecccc
Q 015424 298 EREMDRVL-GIEGIELIGINNRNL 320 (407)
Q Consensus 298 ~eElerAl-~l~Ga~iIGINnRdL 320 (407)
.+-+..+- .+ |-.+.|+|.+.|
T Consensus 260 ~~~~~~~s~~~-~~~m~g~~~~~~ 282 (293)
T PRK04180 260 PEVLAEVSKGL-GEAMVGIDIDEL 282 (293)
T ss_pred HHHHHHHHccc-ccccCCCccccC
Confidence 44443332 34 657999987766
No 369
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=94.51 E-value=0.6 Score=45.43 Aligned_cols=78 Identities=19% Similarity=0.120 Sum_probs=60.0
Q ss_pred HHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccC--C----HHHHHHHHHcCCCEEEEeccCCCHHH
Q 015424 203 ARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIV--D----AWQIYYARTKGADAVLLIAAVLPDLD 276 (407)
Q Consensus 203 A~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIi--d----~~QI~eAr~~GADaVLLiaaiL~~~~ 276 (407)
++.+.+.||+.|-+ .|.|+++.|+.+.+. ..+||+.=..|. + ...+.++..+||+++..+..++..++
T Consensus 162 ~~~a~~~GADyikt-----~~~~~~~~l~~~~~~-~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~d 235 (258)
T TIGR01949 162 ARLGAELGADIVKT-----PYTGDIDSFRDVVKG-CPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDD 235 (258)
T ss_pred HHHHHHHCCCEEec-----cCCCCHHHHHHHHHh-CCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCC
Confidence 57778899999996 267889999999875 789999876666 3 44677888999999999999886555
Q ss_pred HHHHHHHHHH
Q 015424 277 IRYMTKICKL 286 (407)
Q Consensus 277 L~~Li~~a~~ 286 (407)
....++..+.
T Consensus 236 p~~~~~~l~~ 245 (258)
T TIGR01949 236 PVGITKAVCK 245 (258)
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 370
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=94.51 E-value=0.16 Score=51.61 Aligned_cols=80 Identities=23% Similarity=0.305 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHcCCcEEEEEecC--CcCCC--CHHHHHHHHhcCCC-CcEEeccccCCHHHHHHHHH-cCCCEEEEecc
Q 015424 197 FDPVEIARSYEKGGAACLSILTDE--KYFKG--SFENLEAVRSAGVK-CPLLCKEFIVDAWQIYYART-KGADAVLLIAA 270 (407)
Q Consensus 197 ~dp~~iA~ay~~~GA~aISVLTd~--~~F~G--s~edL~~Vr~a~v~-lPVL~KDFIid~~QI~eAr~-~GADaVLLiaa 270 (407)
....++|+..+++|+++|.|-.-. ..+.| +++.+..+|+. ++ +||+..+-|.++.+..+..+ .|||+|.+.=.
T Consensus 152 ~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~-~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRg 230 (323)
T COG0042 152 ILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEA-VPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRG 230 (323)
T ss_pred ccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHh-CCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHH
Confidence 457889999999999999998444 44555 88999999987 77 99999988999998888655 58999999988
Q ss_pred CCCHHHH
Q 015424 271 VLPDLDI 277 (407)
Q Consensus 271 iL~~~~L 277 (407)
.+....|
T Consensus 231 a~~nP~l 237 (323)
T COG0042 231 ALGNPWL 237 (323)
T ss_pred HccCCcH
Confidence 8877655
No 371
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=94.48 E-value=0.78 Score=43.62 Aligned_cols=145 Identities=15% Similarity=0.148 Sum_probs=86.3
Q ss_pred CCHHHHHHHHhcCCCCcEEe--c--cccCCH-HHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcC--CcEEEEeCC
Q 015424 225 GSFENLEAVRSAGVKCPLLC--K--EFIVDA-WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLG--LTALVEVHD 297 (407)
Q Consensus 225 Gs~edL~~Vr~a~v~lPVL~--K--DFIid~-~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LG--L~aLVEVht 297 (407)
...+-++.+|+. ..||+. | |.--.. .++..+...|||++.+.+ ....+.++.+++.+++.+ +-++++..+
T Consensus 37 ~g~~~i~~l~~~--~~~i~~DlK~~DIg~tv~~~~~~~~~~gad~~Tvh~-~~G~~~l~~~~~~~~~~~~~~~~v~~lss 113 (216)
T cd04725 37 AGPEIVKELREL--GFLVFLDLKLGDIPNTVAAAAEALLGLGADAVTVHP-YGGSDMLKAALEAAEEKGKGLFAVTVLSS 113 (216)
T ss_pred cCHHHHHHHHHC--CCcEEEEeecCchHHHHHHHHHHHHhcCCCEEEECC-cCCHHHHHHHHHHHhccCCeEEEEEcCCC
Confidence 456778888875 377773 3 432111 233445678999998854 666778999999888644 455666665
Q ss_pred HHHH--HH----------------HhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEE
Q 015424 298 EREM--DR----------------VLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVV 359 (407)
Q Consensus 298 ~eEl--er----------------Al~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vV 359 (407)
..+. +. |.+. | ..|+ ...-.....+.+. . .++. .+
T Consensus 114 ~~~~~~q~~~~~~~~~~~~~~~~~a~~~-g--~~G~-----------------V~~~~~~~~i~~~-----~-~~~~-~~ 166 (216)
T cd04725 114 PGALDLQEGIPGSLEDLVERLAKLAREA-G--VDGV-----------------VCGATEPEALRRA-----L-GPDF-LI 166 (216)
T ss_pred CCHHHHHhhhcCCHHHHHHHHHHHHHHH-C--CCEE-----------------EECCcchHHHHHh-----h-CCCC-eE
Confidence 5432 11 1111 1 1221 1111111122111 1 1233 35
Q ss_pred EeeCCCCH---------HHHHHHHHcCCCEEEEcccccCCCChHHHHHh
Q 015424 360 GESGLFTP---------DDIAYVQEAGVKAVLVGESIVKQDDPGKGITG 399 (407)
Q Consensus 360 AESGI~t~---------eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~ 399 (407)
.-.||.-. .+...+...|++.+.||.+|++++||.++++.
T Consensus 167 ltPGI~~~~~~~dq~r~~~~~~a~~~g~~~ivvGR~I~~a~~p~~~~~~ 215 (216)
T cd04725 167 LTPGIGAQGSGDDQKRGGTPEDAIRAGADYIVVGRPITQAADPVAAAEA 215 (216)
T ss_pred EcCCcCCCCCccccccccCHHHHHHcCCcEEEEChhhccCCCHHHHHhc
Confidence 66888532 15666778999999999999999999998865
No 372
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=94.44 E-value=0.24 Score=46.51 Aligned_cols=75 Identities=21% Similarity=0.142 Sum_probs=57.1
Q ss_pred HHHHHHcCCcEEEEE-ecCCcCCCCHHHHHHHHhcC-CCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCCHHHH
Q 015424 203 ARSYEKGGAACLSIL-TDEKYFKGSFENLEAVRSAG-VKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDI 277 (407)
Q Consensus 203 A~ay~~~GA~aISVL-Td~~~F~Gs~edL~~Vr~a~-v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L 277 (407)
++.+.+.|++.+.+- .|...|.=+++.+..+++.. .++||+.-..|.++.++.++..+|||+|+++.+++...+.
T Consensus 134 ~~~~~~~g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~~~~p 210 (217)
T cd00331 134 LERALALGAKIIGINNRDLKTFEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMRAPDP 210 (217)
T ss_pred HHHHHHcCCCEEEEeCCCccccCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcCCCCH
Confidence 555667799998764 12233444667778887641 3689999999999999999999999999999998866544
No 373
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=94.42 E-value=2.1 Score=41.86 Aligned_cols=173 Identities=16% Similarity=0.115 Sum_probs=103.0
Q ss_pred HHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhc--CCC-CcEEeccccCCHHHHHHHHHcCCCEEEEeccCCCHHHH
Q 015424 201 EIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSA--GVK-CPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDI 277 (407)
Q Consensus 201 ~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a--~v~-lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L 277 (407)
.+++.+...|++.|-+-.|-.-+ +.+++..+-.+ ... -|++|=- -.++..|..+...|||+|++ -.+-+.++.
T Consensus 24 ~~~e~~~~~g~D~v~iDlEH~~~--~~~~~~~~~~a~~~~g~~~~VRv~-~~~~~~i~~~Ld~Ga~gIiv-P~v~s~e~a 99 (249)
T TIGR02311 24 YAAEICAGAGFDWLLIDGEHAPN--DVRTILSQLQALAPYPSSPVVRPA-IGDPVLIKQLLDIGAQTLLV-PMIETAEQA 99 (249)
T ss_pred HHHHHHHhcCCCEEEEeccCCCC--CHHHHHHHHHHHHhcCCCcEEECC-CCCHHHHHHHhCCCCCEEEe-cCcCCHHHH
Confidence 46777888899998886665543 66655544321 122 4455532 25778899999999999987 667788899
Q ss_pred HHHHHHHHHc-------C----------------------CcEEEEeCCHHHHH---HHhcccCCcEEEeeccccccccc
Q 015424 278 RYMTKICKLL-------G----------------------LTALVEVHDEREMD---RVLGIEGIELIGINNRNLAISIF 325 (407)
Q Consensus 278 ~~Li~~a~~L-------G----------------------L~aLVEVht~eEle---rAl~l~Ga~iIGINnRdL~~~~~ 325 (407)
+.+++.++-. | .-+++-+-|.+-++ ..+..+|.+.+-+-.-||..+..
T Consensus 100 ~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~y~~~~n~~~~vi~~IEt~~av~n~~eI~a~~gvd~l~~G~~DLs~slG 179 (249)
T TIGR02311 100 EAAVAATRYPPMGIRGVGSALARASRWNRIPDYLQQADEEICVLLQVETREALDNLEEIAAVEGVDGVFIGPADLAASMG 179 (249)
T ss_pred HHHHHHcCCCCCCcCCCCCccchhhccCChHHHHHHhhhceEEEEEecCHHHHHHHHHHHCCCCCcEEEECHHHHHHhcC
Confidence 9999988731 2 11333444444333 33334577877777778854443
Q ss_pred cccccccccCch-hHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcc
Q 015424 326 SYRTETFEVDNS-NTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGE 385 (407)
Q Consensus 326 ~~t~~Tf~vDl~-~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGe 385 (407)
++......++. ...++..... ..+... .--..++++++++.+.|++-+++|.
T Consensus 180 -~~~~~~~~~~~~a~~~v~~~~~-----~a~~~~--Gi~~~~~~~~~~~~~~G~~~~~~~~ 232 (249)
T TIGR02311 180 -HLGNPSHPEVQAAIDDAIERIK-----AAGKAA--GILTADPKLARQYLKLGALFVAVGV 232 (249)
T ss_pred -CCCCCCChHHHHHHHHHHHHHH-----HcCCce--eecCCCHHHHHHHHHcCCCEEEEch
Confidence 22222222211 1112222111 011111 1123689999999999999999985
No 374
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=94.40 E-value=0.16 Score=50.52 Aligned_cols=80 Identities=28% Similarity=0.245 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHcCCcEEEEEecC---CcC---------CCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHc-CCC
Q 015424 197 FDPVEIARSYEKGGAACLSILTDE---KYF---------KGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTK-GAD 263 (407)
Q Consensus 197 ~dp~~iA~ay~~~GA~aISVLTd~---~~F---------~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~-GAD 263 (407)
.+..++++.+++.|++.|+|-.-. ..+ .-..+.++.+|+. +++||+.-..|.++.++.++... |||
T Consensus 228 ~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~-~~iPVi~~Ggi~t~~~a~~~l~~g~aD 306 (327)
T cd02803 228 EEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKA-VKIPVIAVGGIRDPEVAEEILAEGKAD 306 (327)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHH-CCCCEEEeCCCCCHHHHHHHHHCCCCC
Confidence 356788999999999999875311 111 1234677788886 89999999999999999999988 899
Q ss_pred EEEEeccCCCHHHH
Q 015424 264 AVLLIAAVLPDLDI 277 (407)
Q Consensus 264 aVLLiaaiL~~~~L 277 (407)
.|.+.-.++.+.+|
T Consensus 307 ~V~igR~~ladP~l 320 (327)
T cd02803 307 LVALGRALLADPDL 320 (327)
T ss_pred eeeecHHHHhCccH
Confidence 99998888866555
No 375
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=94.29 E-value=0.26 Score=45.50 Aligned_cols=79 Identities=23% Similarity=0.250 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCC----------CHHHHHHHHhcCCC-CcEEeccccCCHHHHHHHHHcCCCEEE
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKG----------SFENLEAVRSAGVK-CPLLCKEFIVDAWQIYYARTKGADAVL 266 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~G----------s~edL~~Vr~a~v~-lPVL~KDFIid~~QI~eAr~~GADaVL 266 (407)
++.+..+++ +.||+.|-+- .+|.+ .++.++.+++. .+ +||+.-+.| ++..+.++..+|||+|.
T Consensus 113 t~~e~~~a~-~~gaD~v~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~ 186 (212)
T PRK00043 113 TLEEAAAAL-AAGADYVGVG---PIFPTPTKKDAKAPQGLEGLREIRAA-VGDIPIVAIGGI-TPENAPEVLEAGADGVA 186 (212)
T ss_pred CHHHHHHHh-HcCCCEEEEC---CccCCCCCCCCCCCCCHHHHHHHHHh-cCCCCEEEECCc-CHHHHHHHHHcCCCEEE
Confidence 556654444 5689998652 34433 37889999875 55 999987765 78999999999999999
Q ss_pred EeccCCCHHHHHHHHH
Q 015424 267 LIAAVLPDLDIRYMTK 282 (407)
Q Consensus 267 LiaaiL~~~~L~~Li~ 282 (407)
++.++...++..+.++
T Consensus 187 ~gs~i~~~~d~~~~~~ 202 (212)
T PRK00043 187 VVSAITGAEDPEAAAR 202 (212)
T ss_pred EeHHhhcCCCHHHHHH
Confidence 9988875444433333
No 376
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=94.29 E-value=2.1 Score=44.09 Aligned_cols=143 Identities=15% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCcEEEEE------------------ecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHH--HH
Q 015424 200 VEIARSYEKGGAACLSIL------------------TDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYA--RT 259 (407)
Q Consensus 200 ~~iA~ay~~~GA~aISVL------------------Td~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eA--r~ 259 (407)
+.-|+...++|.++|=+- ||+ |+||++|=.++-.. |.++ .+
T Consensus 162 ~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDe--YGGslENR~Rf~~E-----------------iv~aVr~~ 222 (362)
T PRK10605 162 RQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQ--YGGSVENRARLVLE-----------------VVDAGIAE 222 (362)
T ss_pred HHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCc--CCCcHHHHHHHHHH-----------------HHHHHHHH
Q ss_pred cCCCEEEEeccC----------CCHHH-HHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeecccccccccccc
Q 015424 260 KGADAVLLIAAV----------LPDLD-IRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYR 328 (407)
Q Consensus 260 ~GADaVLLiaai----------L~~~~-L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t 328 (407)
.|.|.|.+-.+. ++.++ ..++++...+.|+ -+++|... ...
T Consensus 223 vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~gi-D~i~vs~~-------------------~~~-------- 274 (362)
T PRK10605 223 WGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGI-AYLHMSEP-------------------DWA-------- 274 (362)
T ss_pred cCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCC-CEEEeccc-------------------ccc--------
Q ss_pred ccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcC-CCEEEEcccccCCCChHHHHHh
Q 015424 329 TETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAG-VKAVLVGESIVKQDDPGKGITG 399 (407)
Q Consensus 329 ~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~G-adaVLVGeaLmk~~dp~~~i~~ 399 (407)
...........++.+. -++++++.||+ |++++..+.+.| +|.|-+|.+++..+|...++++
T Consensus 275 -~~~~~~~~~~~~ik~~--------~~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~iadPd~~~k~~~ 336 (362)
T PRK10605 275 -GGEPYSDAFREKVRAR--------FHGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIANPDLVARLQR 336 (362)
T ss_pred -CCccccHHHHHHHHHH--------CCCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhhCccHHHHHhc
No 377
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=94.23 E-value=5.8 Score=39.36 Aligned_cols=167 Identities=16% Similarity=0.077 Sum_probs=97.1
Q ss_pred HHHHHHHHHcCCcEEEEE-ecCCcCCCCHHHHHHH----Hhc-CCCCcEEeccccCCHH---HHHHHHHcCCCEEEEecc
Q 015424 200 VEIARSYEKGGAACLSIL-TDEKYFKGSFENLEAV----RSA-GVKCPLLCKEFIVDAW---QIYYARTKGADAVLLIAA 270 (407)
Q Consensus 200 ~~iA~ay~~~GA~aISVL-Td~~~F~Gs~edL~~V----r~a-~v~lPVL~KDFIid~~---QI~eAr~~GADaVLLiaa 270 (407)
.++++.+.+.|+++|-|+ |-..|+.=|.+.-..+ .+. .-++||+..=.--... ....|..+|||+|+++.-
T Consensus 29 ~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~~t~~ai~~a~~a~~~Gadav~~~pP 108 (296)
T TIGR03249 29 RENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGGNTSDAIEIARLAEKAGADGYLLLPP 108 (296)
T ss_pred HHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCccHHHHHHHHHHHHHhCCCEEEECCC
Confidence 445677788999999987 3334444444443333 221 2368999653211112 334467899999999877
Q ss_pred CC---CHHHHH-HHHHHHHHcCCcEEEEeC-----CHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHH
Q 015424 271 VL---PDLDIR-YMTKICKLLGLTALVEVH-----DEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKK 341 (407)
Q Consensus 271 iL---~~~~L~-~Li~~a~~LGL~aLVEVh-----t~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~ 341 (407)
.. +++.+. ++...+...++.+++=-. +.+.+.+..+. -..++|| ++-..|+....+
T Consensus 109 ~y~~~s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~~~La~~-~~nvvgi--------------Kds~~d~~~~~~ 173 (296)
T TIGR03249 109 YLINGEQEGLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERLADR-CPNLVGF--------------KDGIGDMEQMIE 173 (296)
T ss_pred CCCCCCHHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHhh-CCCEEEE--------------EeCCCCHHHHHH
Confidence 55 445544 444455556777654311 45666666541 3579999 444567777777
Q ss_pred HhhcccccccccCCceEEEeeCCCC-HHHHHHHHHcCCCEEEEcccccC
Q 015424 342 LLEGERGEIIRQKNIIVVGESGLFT-PDDIAYVQEAGVKAVLVGESIVK 389 (407)
Q Consensus 342 L~~~~~~~~i~~~~v~vVAESGI~t-~eD~~~l~~~GadaVLVGeaLmk 389 (407)
+.... +++..+ -+|-.. -..+-....+|++|++-|-+=+-
T Consensus 174 ~~~~~------~~~~~v--~~G~~~~d~~~~~~~~~Ga~G~is~~~n~~ 214 (296)
T TIGR03249 174 ITQRL------GDRLGY--LGGMPTAEVTAPAYLPLGVTSYSSAIFNFI 214 (296)
T ss_pred HHHHc------CCCeEE--EeCCCcchhhHHHHHhCCCCEEEecHHHhh
Confidence 76541 234333 333321 22334456789999998866443
No 378
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=94.22 E-value=0.4 Score=48.26 Aligned_cols=90 Identities=16% Similarity=0.131 Sum_probs=55.8
Q ss_pred CcEEEEeCCHH----HHHHHhccc--CCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEee
Q 015424 289 LTALVEVHDER----EMDRVLGIE--GIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGES 362 (407)
Q Consensus 289 L~aLVEVht~e----ElerAl~l~--Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAES 362 (407)
....+||.|.+ |+..+.+.. ++++|-+.|-+= ......+...++.+.+..... +.+.+++.|
T Consensus 185 ~~i~vevdt~~~~v~eal~~~~~~~~~~d~I~lDn~~~----------~~G~~~~~~~~~~~~l~~~g~--~~~~ieaSG 252 (302)
T cd01571 185 VPRIALIDTFNDEKEEALKAAKALGDKLDGVRLDTPSS----------RRGVFRYLIREVRWALDIRGY--KHVKIFVSG 252 (302)
T ss_pred CCeEEEEeecCcchHHHHHHHHHhCCCCcEEEECCCCC----------CCCCHHHHHHHHHHHHHhCCC--CCeEEEEeC
Confidence 45567777766 455555431 377888754320 001122223333333211111 347899999
Q ss_pred CCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015424 363 GLFTPDDIAYVQEAGVKAVLVGESIVKQD 391 (407)
Q Consensus 363 GI~t~eD~~~l~~~GadaVLVGeaLmk~~ 391 (407)
|| +++.+..+.+.|+|.+=||+.++..+
T Consensus 253 gI-~~~~i~~~a~~gvD~isvGs~~~~~~ 280 (302)
T cd01571 253 GL-DEEDIKELEDVGVDAFGVGTAISKAP 280 (302)
T ss_pred CC-CHHHHHHHHHcCCCEEECCcccCCCC
Confidence 99 99999999999999999999998753
No 379
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=94.18 E-value=0.52 Score=46.72 Aligned_cols=168 Identities=15% Similarity=0.176 Sum_probs=94.9
Q ss_pred CHHHHHHHHHH--cCCcEEEEEecCCcCCCCHHHHHHHHhcCC------CCcEE-eccc--cCCH-----HHHHHHHHcC
Q 015424 198 DPVEIARSYEK--GGAACLSILTDEKYFKGSFENLEAVRSAGV------KCPLL-CKEF--IVDA-----WQIYYARTKG 261 (407)
Q Consensus 198 dp~~iA~ay~~--~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v------~lPVL-~KDF--Iid~-----~QI~eAr~~G 261 (407)
+..++++...+ +|..++.| .+.++..+++. . ++-|- .=+| .-.+ .++.+|...|
T Consensus 27 ~I~~lc~eA~~~~~~faaVcV---------~P~~v~~a~~~-L~~~~~~~vkv~tVigFP~G~~~t~~K~~Ea~~Ai~~G 96 (257)
T PRK05283 27 KVIALCHQAKTPVGNTAAICI---------YPRFIPIARKT-LREQGTPEIRIATVTNFPHGNDDIDIALAETRAAIAYG 96 (257)
T ss_pred HHHHHHHHHHhcCCCeeEEEE---------CHHHHHHHHHH-hcccCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcC
Confidence 44455566666 57777777 47888888763 2 12221 1233 1111 2667788899
Q ss_pred CCEEEEecc---CCCH------HHHHHHHHHHH-HcCCcEEEEeC--CHH-HHHHH----hcccCCcEEEeecccccccc
Q 015424 262 ADAVLLIAA---VLPD------LDIRYMTKICK-LLGLTALVEVH--DER-EMDRV----LGIEGIELIGINNRNLAISI 324 (407)
Q Consensus 262 ADaVLLiaa---iL~~------~~L~~Li~~a~-~LGL~aLVEVh--t~e-ElerA----l~l~Ga~iIGINnRdL~~~~ 324 (407)
||-|-+..- +++. +++..+.+.|+ ..-+.+++|+. +.+ ++.++ .+. ||++|=.. ||
T Consensus 97 AdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~a-GADFVKTS------TG 169 (257)
T PRK05283 97 ADEVDVVFPYRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKA-GADFIKTS------TG 169 (257)
T ss_pred CCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHh-CCCEEEcC------CC
Confidence 998766443 3331 34555555554 24488999998 333 35443 443 88887652 33
Q ss_pred ccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccC
Q 015424 325 FSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK 389 (407)
Q Consensus 325 ~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk 389 (407)
++....| ++...-+.+.++.... +..+-+=+.|||+|.+++..+.++|.+- +|.-..+
T Consensus 170 f~~~gAt----~edv~lm~~~i~~~~~-~~~vgIKAsGGIrt~~~A~~~i~ag~~~--lg~~~~~ 227 (257)
T PRK05283 170 KVPVNAT----LEAARIMLEVIRDMGV-AKTVGFKPAGGVRTAEDAAQYLALADEI--LGADWAD 227 (257)
T ss_pred CCCCCCC----HHHHHHHHHHHHhccc-CCCeeEEccCCCCCHHHHHHHHHHHHHH--hChhhcC
Confidence 3322222 2333223232110000 2346788999999999999999998552 3554444
No 380
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=94.15 E-value=3.3 Score=42.88 Aligned_cols=148 Identities=14% Similarity=0.013 Sum_probs=96.1
Q ss_pred CCCcEE-eccccCC--HHHHHHHHHcC-----------CCEEEEeccCCCHH----HHHHHHHHHHHcCCcEEE------
Q 015424 238 VKCPLL-CKEFIVD--AWQIYYARTKG-----------ADAVLLIAAVLPDL----DIRYMTKICKLLGLTALV------ 293 (407)
Q Consensus 238 v~lPVL-~KDFIid--~~QI~eAr~~G-----------ADaVLLiaaiL~~~----~L~~Li~~a~~LGL~aLV------ 293 (407)
.++||- .-|-..+ ...|.+|..+| -+.|..+++-|+-+ .-++.+++||..|+.+=.
T Consensus 91 ~~VPValHLDHg~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~lpfEeNI~~TkevVe~Ah~~GvsVEaELG~Ig 170 (350)
T PRK09197 91 YGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMIDLSEEPLEENIEICSKYLERMAKAGMTLEIELGVTG 170 (350)
T ss_pred CCCCEEEECCCCCCcchHHHHHHHHhhHHHHHhcCCCCceeEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccC
Confidence 578874 5666666 33455555555 99999999999753 345678889988776611
Q ss_pred ----------E-----eCCHHHHHHHhcccCC----cEEEeeccccccccccccccccccCchhHHHHhhccccc-cccc
Q 015424 294 ----------E-----VHDEREMDRVLGIEGI----ELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGE-IIRQ 353 (407)
Q Consensus 294 ----------E-----Vht~eElerAl~l~Ga----~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~-~i~~ 353 (407)
+ -.|.+|+.+..+..|+ |.+.|..-+. || .|.+.....|++..+++.+.+.+. .+..
T Consensus 171 g~Ed~~~~~~~~~~~~~TdPeeA~~Fv~~Tgv~~~~D~LAvaiGt~--HG-~Yk~~~p~Ld~e~L~~I~~~v~~~~~~~~ 247 (350)
T PRK09197 171 GEEDGVDNSHEDNSKLYTQPEDVLYAYEALGKISGRFTIAASFGNV--HG-VYKPGNVKLRPEILKDSQEYVSKKFGLPA 247 (350)
T ss_pred CCcCCccccccccccccCCHHHHHHHHHHhCCCCcceEEeeecccc--cC-CcCCCCCccCHHHHHHHHHHHHHhhCCCC
Confidence 1 3477788777764476 7777764444 22 132235678888888887653100 0001
Q ss_pred CCceEEE--eeCCCCHHHHHHHHHcCCCEEEEcccccC
Q 015424 354 KNIIVVG--ESGLFTPDDIAYVQEAGVKAVLVGESIVK 389 (407)
Q Consensus 354 ~~v~vVA--ESGI~t~eD~~~l~~~GadaVLVGeaLmk 389 (407)
.++++|. .||+ +.|+++++.++|+.-|=|++.+..
T Consensus 248 ~~vPLVLHGgSGi-pde~i~~ai~~GI~KINi~T~l~~ 284 (350)
T PRK09197 248 KPFDFVFHGGSGS-TLEEIREAVSYGVVKMNIDTDTQW 284 (350)
T ss_pred CCCCEEEeCCCCC-CHHHHHHHHHCCCeeEEeCcHHHH
Confidence 1455555 4555 558899999999999999988754
No 381
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=94.15 E-value=2.8 Score=41.24 Aligned_cols=165 Identities=18% Similarity=0.169 Sum_probs=96.2
Q ss_pred HHHHHHHHHHcCCcEEEEEe-cCCcCCCCHHHH-H---HHHh-cCCCCcEEeccccCCHH----HHHHHHHcCCCEEEEe
Q 015424 199 PVEIARSYEKGGAACLSILT-DEKYFKGSFENL-E---AVRS-AGVKCPLLCKEFIVDAW----QIYYARTKGADAVLLI 268 (407)
Q Consensus 199 p~~iA~ay~~~GA~aISVLT-d~~~F~Gs~edL-~---~Vr~-a~v~lPVL~KDFIid~~----QI~eAr~~GADaVLLi 268 (407)
..++++.+.+.|..+|-|+. -..|+.=+.+.- + .+.+ +..++||+..=.-.+.. ....|..+|||+|+++
T Consensus 24 ~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~ 103 (289)
T PF00701_consen 24 LKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVI 103 (289)
T ss_dssp HHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEE
T ss_pred HHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEe
Confidence 34556777889999999962 222222233222 2 2222 22478999643223333 2344778999999998
Q ss_pred ccC---CCHHHHHH-HHHHHHHcCCcEEEEeC--------CHHHHHHHhcccCCcEEEeeccccccccccccccccccCc
Q 015424 269 AAV---LPDLDIRY-MTKICKLLGLTALVEVH--------DEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDN 336 (407)
Q Consensus 269 aai---L~~~~L~~-Li~~a~~LGL~aLVEVh--------t~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl 336 (407)
.-. .+++++.+ +.+.+...++..++=-+ +.+.+.+..+. ..++|+ +.-..|+
T Consensus 104 ~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~~--~nv~gi--------------K~s~~~~ 167 (289)
T PF00701_consen 104 PPYYFKPSQEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETLARLAKI--PNVVGI--------------KDSSGDL 167 (289)
T ss_dssp ESTSSSCCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHTS--TTEEEE--------------EESSSBH
T ss_pred ccccccchhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHHHHHhcC--CcEEEE--------------EcCchhH
Confidence 664 35555444 44556566787776433 34555555554 479999 4334456
Q ss_pred hhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccC
Q 015424 337 SNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK 389 (407)
Q Consensus 337 ~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk 389 (407)
....++.... +++ +.|..| +-+.+.....+|++|++.|.+-+-
T Consensus 168 ~~~~~~~~~~------~~~-~~v~~G---~d~~~~~~l~~G~~G~is~~~n~~ 210 (289)
T PF00701_consen 168 ERLIQLLRAV------GPD-FSVFCG---DDELLLPALAAGADGFISGLANVF 210 (289)
T ss_dssp HHHHHHHHHS------STT-SEEEES---SGGGHHHHHHTTSSEEEESGGGTH
T ss_pred HHHHHHhhhc------ccC-eeeecc---ccccccccccccCCEEEEcccccC
Confidence 5566665542 234 344444 333466778899999999987653
No 382
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=94.13 E-value=6.5 Score=38.81 Aligned_cols=164 Identities=15% Similarity=0.146 Sum_probs=93.3
Q ss_pred HHHHHHHHHc-CCcEEEEEe--cCCcCCCCHHHHHHH---Hhc-CCCCcEEeccccCCHH----HHHHHHHcCCCEEEEe
Q 015424 200 VEIARSYEKG-GAACLSILT--DEKYFKGSFENLEAV---RSA-GVKCPLLCKEFIVDAW----QIYYARTKGADAVLLI 268 (407)
Q Consensus 200 ~~iA~ay~~~-GA~aISVLT--d~~~F~Gs~edL~~V---r~a-~v~lPVL~KDFIid~~----QI~eAr~~GADaVLLi 268 (407)
.++++.+.+. |+.+|-++. -+.+.--.-|....+ ++. .-.+||+..=.-.+.. ....|..+|||+|++.
T Consensus 24 ~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~ 103 (288)
T cd00954 24 RAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAI 103 (288)
T ss_pred HHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 4456667788 999998872 111111111222222 222 1358998643222332 2345789999999997
Q ss_pred ccCC---CHHHH-HHHHHHHHHc-CCcEEEE-----eC---CHHHHHHHhcccCCcEEEeeccccccccccccccccccC
Q 015424 269 AAVL---PDLDI-RYMTKICKLL-GLTALVE-----VH---DEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVD 335 (407)
Q Consensus 269 aaiL---~~~~L-~~Li~~a~~L-GL~aLVE-----Vh---t~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vD 335 (407)
.-.. +++++ +++...+... ++.+++= .. +.+.+.+..+. ..++|| ++-..|
T Consensus 104 ~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~~--pnivgi--------------K~s~~d 167 (288)
T cd00954 104 TPFYYKFSFEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLELFEI--PNVIGV--------------KFTATD 167 (288)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHhcC--CCEEEE--------------EeCCCC
Confidence 7644 44444 4455556777 8887763 11 45556555553 579999 444456
Q ss_pred chhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccC
Q 015424 336 NSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK 389 (407)
Q Consensus 336 l~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk 389 (407)
+....+++... +.+..++ +|.. +.+.....+|++|++-|.+-+-
T Consensus 168 ~~~~~~~~~~~------~~~~~v~--~G~d--~~~~~~~~~G~~G~i~~~~n~~ 211 (288)
T cd00954 168 LYDLERIRAAS------PEDKLVL--NGFD--EMLLSALALGADGAIGSTYNVN 211 (288)
T ss_pred HHHHHHHHHhC------CCCcEEE--Eech--HHHHHHHHcCCCEEEeChhhhC
Confidence 66666776541 2243332 3332 2345566799999988866443
No 383
>PRK15447 putative protease; Provisional
Probab=94.12 E-value=1.1 Score=44.91 Aligned_cols=108 Identities=17% Similarity=0.196 Sum_probs=72.1
Q ss_pred HHHHHH-HcCCCEEEEeccC------CCHHHHHHHHHHHHHcCCcEEEEe----CCHHH---HHHHhcccCCcEEEeecc
Q 015424 253 QIYYAR-TKGADAVLLIAAV------LPDLDIRYMTKICKLLGLTALVEV----HDERE---MDRVLGIEGIELIGINNR 318 (407)
Q Consensus 253 QI~eAr-~~GADaVLLiaai------L~~~~L~~Li~~a~~LGL~aLVEV----ht~eE---lerAl~l~Ga~iIGINnR 318 (407)
..|.+. +.|||+|-++... ++.+++.+.++.+++.|..+.+-+ +..+| +.+.++. +.+.|-++|-
T Consensus 19 ~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~-~~~~v~v~d~ 97 (301)
T PRK15447 19 DFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVEN-GEFLVEANDL 97 (301)
T ss_pred HHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhc-CCCEEEEeCH
Confidence 456665 4599999999776 577899999999999999987755 32334 4444554 5554445433
Q ss_pred ccccccccccccccccCchhHHHHhhcccccccccCCceEEEee--CCCCHHHHHHHHHcCCCEEEEccccc
Q 015424 319 NLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGES--GLFTPDDIAYVQEAGVKAVLVGESIV 388 (407)
Q Consensus 319 dL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAES--GI~t~eD~~~l~~~GadaVLVGeaLm 388 (407)
.. ..+++. .+..+++.. -|.+...++.+.+.|++.|.+.--|-
T Consensus 98 g~-------------------l~~~~e--------~~~~l~~d~~lni~N~~a~~~l~~~G~~rv~ls~ELs 142 (301)
T PRK15447 98 GA-------------------VRLLAE--------RGLPFVAGPALNCYNAATLALLARLGATRWCMPVELS 142 (301)
T ss_pred HH-------------------HHHHHh--------cCCCEEEecccccCCHHHHHHHHHcCCcEEEECCcCC
Confidence 22 233332 123344444 35889999999999999998876554
No 384
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=94.08 E-value=0.058 Score=55.30 Aligned_cols=92 Identities=20% Similarity=0.164 Sum_probs=64.7
Q ss_pred EEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEE-------ecCCcCCCCHHHHHHHHh-----cCCCCcEEecc
Q 015424 179 LIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSIL-------TDEKYFKGSFENLEAVRS-----AGVKCPLLCKE 246 (407)
Q Consensus 179 vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVL-------Td~~~F~Gs~edL~~Vr~-----a~v~lPVL~KD 246 (407)
.|-++|+.-|..-+|..+.-..+.|+.+.++||+++-|= |-..--+=..-.|.+|.. ....+||+.-.
T Consensus 141 ~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIADG 220 (346)
T PRK05096 141 FVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDG 220 (346)
T ss_pred HHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEecC
Confidence 344566666766666667767789999999999999743 222111112224444431 12478999999
Q ss_pred ccCCHHHHHHHHHcCCCEEEEecc
Q 015424 247 FIVDAWQIYYARTKGADAVLLIAA 270 (407)
Q Consensus 247 FIid~~QI~eAr~~GADaVLLiaa 270 (407)
.|..+-.|..|.++|||+|.|+.-
T Consensus 221 Gi~~sGDI~KAlaaGAd~VMlGsl 244 (346)
T PRK05096 221 GCTVPGDVAKAFGGGADFVMLGGM 244 (346)
T ss_pred CcccccHHHHHHHcCCCEEEeChh
Confidence 999999999999999999999743
No 385
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=94.07 E-value=0.36 Score=43.40 Aligned_cols=77 Identities=22% Similarity=0.114 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHcCCcEEEEEe------cCCc-CCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEecc
Q 015424 198 DPVEIARSYEKGGAACLSILT------DEKY-FKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA 270 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLT------d~~~-F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa 270 (407)
++.+ ++.+.+.|++.|.+.. .+.+ ...+++.++.+++. .++||+.-..| ++..+.+++.+|||+|.++..
T Consensus 104 t~~~-~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pv~a~GGi-~~~~i~~~~~~Ga~~i~~g~~ 180 (196)
T cd00564 104 SLEE-ALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL-VEIPVVAIGGI-TPENAAEVLAAGADGVAVISA 180 (196)
T ss_pred CHHH-HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh-CCCCEEEECCC-CHHHHHHHHHcCCCEEEEehH
Confidence 4444 5556677899987631 1122 33457888888876 78999987765 678999999999999999998
Q ss_pred CCCHHHH
Q 015424 271 VLPDLDI 277 (407)
Q Consensus 271 iL~~~~L 277 (407)
++...+.
T Consensus 181 i~~~~~~ 187 (196)
T cd00564 181 ITGADDP 187 (196)
T ss_pred hhcCCCH
Confidence 8754443
No 386
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=94.05 E-value=1 Score=37.81 Aligned_cols=98 Identities=20% Similarity=0.294 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHHcCCcE-EEEeCC-HHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccc
Q 015424 273 PDLDIRYMTKICKLLGLTA-LVEVHD-EREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEI 350 (407)
Q Consensus 273 ~~~~L~~Li~~a~~LGL~a-LVEVht-~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~ 350 (407)
.+--+..+..+.++.|.++ +++... .+++...+....+++||++.. +..+.....++++..+.
T Consensus 13 ~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~-------------~~~~~~~~~~l~~~~k~-- 77 (121)
T PF02310_consen 13 HPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVS-------------MTPNLPEAKRLARAIKE-- 77 (121)
T ss_dssp TSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEES-------------SSTHHHHHHHHHHHHHT--
T ss_pred hhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEcc-------------CcCcHHHHHHHHHHHHh--
Confidence 3445777788888889888 555553 366655444348999999632 33344445555554321
Q ss_pred cccCCceEEEeeCCCCHHHHHHHHH-cCCCEEEEccc
Q 015424 351 IRQKNIIVVGESGLFTPDDIAYVQE-AGVKAVLVGES 386 (407)
Q Consensus 351 i~~~~v~vVAESGI~t~eD~~~l~~-~GadaVLVGea 386 (407)
. .+++.+|..|...|...-.-+.. .|+|.|++|+.
T Consensus 78 ~-~p~~~iv~GG~~~t~~~~~~l~~~~~~D~vv~Geg 113 (121)
T PF02310_consen 78 R-NPNIPIVVGGPHATADPEEILREYPGIDYVVRGEG 113 (121)
T ss_dssp T-CTTSEEEEEESSSGHHHHHHHHHHHTSEEEEEETT
T ss_pred c-CCCCEEEEECCchhcChHHHhccCcCcceecCCCh
Confidence 1 23555555555545443333333 89999999985
No 387
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=93.97 E-value=0.34 Score=50.97 Aligned_cols=131 Identities=15% Similarity=0.140 Sum_probs=87.1
Q ss_pred CCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHH--cCCcEEE-EeCCHHHHHHHhcccCCcEEEeeccccccccc
Q 015424 249 VDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKL--LGLTALV-EVHDEREMDRVLGIEGIELIGINNRNLAISIF 325 (407)
Q Consensus 249 id~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~--LGL~aLV-EVht~eElerAl~l~Ga~iIGINnRdL~~~~~ 325 (407)
-|.+.+..-..+|.|.|+|..+-=...---+++++.++ ..++++. -|-|.+.++..+.+ |+|.+-|. .++|.
T Consensus 251 ~dK~rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~a-GaDgLrVG----MGsGS 325 (503)
T KOG2550|consen 251 DDKERLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAA-GADGLRVG----MGSGS 325 (503)
T ss_pred chhHHHHHhhhcCCcEEEEecCCCcchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHc-cCceeEec----cccCc
Confidence 35566777778999999999886644434567788776 3666544 35578888888886 99987663 12222
Q ss_pred cccccc-cccC---chhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccC
Q 015424 326 SYRTET-FEVD---NSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK 389 (407)
Q Consensus 326 ~~t~~T-f~vD---l~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk 389 (407)
.-++.. ..+- .....+...... ..++++||-|||.++-++.+...+||+.|..|.-|-.
T Consensus 326 iCiTqevma~GrpQ~TAVy~va~~A~-----q~gvpviADGGiq~~Ghi~KAl~lGAstVMmG~lLAg 388 (503)
T KOG2550|consen 326 ICITQKVMACGRPQGTAVYKVAEFAN-----QFGVPCIADGGIQNVGHVVKALGLGASTVMMGGLLAG 388 (503)
T ss_pred eeeeceeeeccCCcccchhhHHHHHH-----hcCCceeecCCcCccchhHhhhhcCchhheecceeee
Confidence 222111 1111 111222222211 2478999999999999999999999999999987654
No 388
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=93.91 E-value=0.23 Score=48.42 Aligned_cols=90 Identities=20% Similarity=0.123 Sum_probs=57.7
Q ss_pred CCCHHHHHHHHH----HcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccC
Q 015424 196 DFDPVEIARSYE----KGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV 271 (407)
Q Consensus 196 ~~dp~~iA~ay~----~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaai 271 (407)
+.+..++|.+|. -.|-..+=+=.-.+.|+.=.+.+.++++...+.|++....|.++.|..++..+|||.|..+..+
T Consensus 135 ~~~~~~iaa~~alA~~~~g~~~iYLEaGSGa~~~v~~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~i 214 (230)
T PF01884_consen 135 PLDKPEIAAAAALAAEYLGMPIIYLEAGSGAYGPVPEEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAI 214 (230)
T ss_dssp --SHHHHHHHHHHHHHHTT-SEEEEE--TTSSS-HHHHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESCHH
T ss_pred CCCcHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCccHHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEE
Confidence 456777776664 3455555442223344333255555554447999999999999999999999999999998877
Q ss_pred CCHHHHHHHHHHHH
Q 015424 272 LPDLDIRYMTKICK 285 (407)
Q Consensus 272 L~~~~L~~Li~~a~ 285 (407)
=++.+++++++..+
T Consensus 215 ee~~~~e~~~~~i~ 228 (230)
T PF01884_consen 215 EEDPDLEEALETIK 228 (230)
T ss_dssp HHHH-HHHHHTHHH
T ss_pred EEcchHHHHHHHHh
Confidence 76666677666544
No 389
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=93.90 E-value=0.74 Score=45.44 Aligned_cols=89 Identities=22% Similarity=0.447 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccc
Q 015424 273 PDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIR 352 (407)
Q Consensus 273 ~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~ 352 (407)
..+.|+.|.++++++||.++.|+|+.++++.+.+ .++++=|-.|+. .. ++....+.+
T Consensus 64 G~~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e--~vdilqIgs~~~---------~n----~~LL~~va~-------- 120 (250)
T PRK13397 64 GLQGIRYLHEVCQEFGLLSVSEIMSERQLEEAYD--YLDVIQVGARNM---------QN----FEFLKTLSH-------- 120 (250)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHh--cCCEEEECcccc---------cC----HHHHHHHHc--------
Confidence 4457899999999999999999999999999987 489999988887 32 333333332
Q ss_pred cCCceEEEeeC-CCCHHHHH----HHHHcCCCEEEEcc
Q 015424 353 QKNIIVVGESG-LFTPDDIA----YVQEAGVKAVLVGE 385 (407)
Q Consensus 353 ~~~v~vVAESG-I~t~eD~~----~l~~~GadaVLVGe 385 (407)
.+.+|+..-| ..|++|+. ++.+.|..-+++-+
T Consensus 121 -tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~e 157 (250)
T PRK13397 121 -IDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCE 157 (250)
T ss_pred -cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEc
Confidence 3568888888 88999875 45667887788777
No 390
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=93.90 E-value=0.33 Score=49.40 Aligned_cols=91 Identities=15% Similarity=0.222 Sum_probs=68.6
Q ss_pred CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEe---ccCC--CHH---HHHHHHHHHHHcCCcEEEE--e
Q 015424 226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLI---AAVL--PDL---DIRYMTKICKLLGLTALVE--V 295 (407)
Q Consensus 226 s~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLi---aaiL--~~~---~L~~Li~~a~~LGL~aLVE--V 295 (407)
+.+||+-+|+. +++||+.|+. ........|.++|+++|++- .+-| .++ -|.+.++.. +=.++++++ |
T Consensus 211 ~W~Di~wLr~~-T~LPIvvKGi-lt~eDA~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV-~~ri~V~lDGGV 287 (363)
T KOG0538|consen 211 SWKDIKWLRSI-TKLPIVVKGV-LTGEDARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAV-EGRIPVFLDGGV 287 (363)
T ss_pred ChhhhHHHHhc-CcCCeEEEee-cccHHHHHHHHhCCceEEEeCCCccccCcccchHHHHHHHHHHh-cCceEEEEecCc
Confidence 68999999997 9999999995 55566778999999999872 3333 223 344444432 236888887 7
Q ss_pred CCHHHHHHHhcccCCcEEEeecccc
Q 015424 296 HDEREMDRVLGIEGIELIGINNRNL 320 (407)
Q Consensus 296 ht~eElerAl~l~Ga~iIGINnRdL 320 (407)
.+-.++.+|+.+ ||+.|.|...-+
T Consensus 288 R~G~DVlKALAL-GAk~VfiGRP~v 311 (363)
T KOG0538|consen 288 RRGTDVLKALAL-GAKGVFIGRPIV 311 (363)
T ss_pred ccchHHHHHHhc-ccceEEecCchh
Confidence 799999999999 999999965433
No 391
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=93.85 E-value=5.9 Score=39.79 Aligned_cols=168 Identities=8% Similarity=0.019 Sum_probs=92.3
Q ss_pred CHHHHHHHHHHcCCcEEEEEe-cCCcCCCCHHHHHHH-H---h-cCCCCcEEeccccCCHH----HHHHHHHcCCCEEEE
Q 015424 198 DPVEIARSYEKGGAACLSILT-DEKYFKGSFENLEAV-R---S-AGVKCPLLCKEFIVDAW----QIYYARTKGADAVLL 267 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLT-d~~~F~Gs~edL~~V-r---~-a~v~lPVL~KDFIid~~----QI~eAr~~GADaVLL 267 (407)
...++.+.+...|+.+|-|+. =..|+.=+.+.-..+ + + ..-++||+..=.-.+.. +...|..+|||+|++
T Consensus 30 ~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv 109 (309)
T cd00952 30 ETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTML 109 (309)
T ss_pred HHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEE
Confidence 345566777889999999872 122222233332222 2 2 12369999654323332 345578899999999
Q ss_pred eccCC---CHHHHHH-HHHHHHHc-CCcEEEE--------eCCHHHHHHHhcccCCcEEEeecccccccccccccccccc
Q 015424 268 IAAVL---PDLDIRY-MTKICKLL-GLTALVE--------VHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEV 334 (407)
Q Consensus 268 iaaiL---~~~~L~~-Li~~a~~L-GL~aLVE--------Vht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~v 334 (407)
+.-.. +++++.+ +-..+... ++.+++= --+.+-+.+..+. ..++|| ++-.
T Consensus 110 ~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~~~--pnivgi--------------Kdss- 172 (309)
T cd00952 110 GRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELAQI--PQVVAA--------------KYLG- 172 (309)
T ss_pred CCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHhcC--CCEEEE--------------EecC-
Confidence 97643 4444444 44456666 5777542 1145556665554 579999 5555
Q ss_pred CchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcC--CCEEEEcccccCCCC
Q 015424 335 DNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAG--VKAVLVGESIVKQDD 392 (407)
Q Consensus 335 Dl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~G--adaVLVGeaLmk~~d 392 (407)
|+....+++... ++++.+.. |-.. .+..+.-.| ++|++-|.+-+-+.-
T Consensus 173 d~~~~~~~i~~~------~~~~~v~~--g~d~--~l~~~~~~~~~~~G~is~~~n~~P~~ 222 (309)
T cd00952 173 DIGALLSDLAAV------KGRMRLLP--LEDD--YYAAARLFPEEVTAFWSSGAACGPAP 222 (309)
T ss_pred ChHHHHHHHHHc------CCCeEEee--cchh--HHHHHHhcCccCccEEEeccccCcHH
Confidence 777777665431 22433332 3322 222222222 368888877664333
No 392
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=93.82 E-value=0.26 Score=49.98 Aligned_cols=79 Identities=8% Similarity=0.018 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHcCCcEEEEEecC---CcCCC---------CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEE
Q 015424 198 DPVEIARSYEKGGAACLSILTDE---KYFKG---------SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAV 265 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~---~~F~G---------s~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaV 265 (407)
+..++++.++++|+++|.|-.-. ..+.| .++.+..+++..+++||+.-+.|.++.++.++.. |||+|
T Consensus 152 ~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~aDgV 230 (333)
T PRK11815 152 FLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-HVDGV 230 (333)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-cCCEE
Confidence 56788999999999999885311 12332 3778888887523899999888999999988876 79999
Q ss_pred EEeccCCCHHHH
Q 015424 266 LLIAAVLPDLDI 277 (407)
Q Consensus 266 LLiaaiL~~~~L 277 (407)
.+.-.++.+..+
T Consensus 231 mIGRa~l~nP~~ 242 (333)
T PRK11815 231 MIGRAAYHNPYL 242 (333)
T ss_pred EEcHHHHhCCHH
Confidence 998888866554
No 393
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=93.79 E-value=0.16 Score=52.84 Aligned_cols=72 Identities=24% Similarity=0.167 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCCC---------------HHHHHHHHhc------CCCCcEEeccccCCHHHHHH
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKGS---------------FENLEAVRSA------GVKCPLLCKEFIVDAWQIYY 256 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~Gs---------------~edL~~Vr~a------~v~lPVL~KDFIid~~QI~e 256 (407)
++.++++..+.+|+++|.|-.- .+|+ ..-|..+++. ..++||+.-..|.+..++..
T Consensus 226 ~~~~~a~~~~~~g~D~I~VsG~---~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~k 302 (392)
T cd02808 226 GEGDIAAGVAAAGADFITIDGA---EGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAK 302 (392)
T ss_pred CHHHHHHHHHHcCCCEEEEeCC---CCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHH
Confidence 7889999999999999998532 2222 2233344432 12699999999999999999
Q ss_pred HHHcCCCEEEEeccCC
Q 015424 257 ARTKGADAVLLIAAVL 272 (407)
Q Consensus 257 Ar~~GADaVLLiaaiL 272 (407)
|.++|||+|-+....|
T Consensus 303 alaLGAd~V~ig~~~l 318 (392)
T cd02808 303 ALALGADAVGIGTAAL 318 (392)
T ss_pred HHHcCCCeeeechHHH
Confidence 9999999999988776
No 394
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=93.78 E-value=0.74 Score=51.68 Aligned_cols=155 Identities=15% Similarity=0.126 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHcCCcEEEEEec----------------CCcCCCCH--------HHHHHHHhcCCC--CcEEeccccCCH
Q 015424 198 DPVEIARSYEKGGAACLSILTD----------------EKYFKGSF--------ENLEAVRSAGVK--CPLLCKEFIVDA 251 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd----------------~~~F~Gs~--------edL~~Vr~a~v~--lPVL~KDFIid~ 251 (407)
+..+-|+...++|+++|-|..- ..-|+||+ +-++.||++ +. .||-.|=-..+-
T Consensus 552 ~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~-~~~~~~v~~ri~~~~~ 630 (765)
T PRK08255 552 DFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAV-WPAEKPMSVRISAHDW 630 (765)
T ss_pred HHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHh-cCCCCeeEEEEccccc
Q ss_pred HHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccc
Q 015424 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTET 331 (407)
Q Consensus 252 ~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~T 331 (407)
.. .-++.++..++.+.+.+.|+ -+++||.-.--...... ..
T Consensus 631 ~~----------------~g~~~~~~~~~~~~l~~~g~-d~i~vs~g~~~~~~~~~----------------------~~ 671 (765)
T PRK08255 631 VE----------------GGNTPDDAVEIARAFKAAGA-DLIDVSSGQVSKDEKPV----------------------YG 671 (765)
T ss_pred cC----------------CCCCHHHHHHHHHHHHhcCC-cEEEeCCCCCCcCCCCC----------------------cC
Q ss_pred cccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcC-CCEEEEcccccCCC-ChHHHHHhh
Q 015424 332 FEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAG-VKAVLVGESIVKQD-DPGKGITGL 400 (407)
Q Consensus 332 f~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~G-adaVLVGeaLmk~~-dp~~~i~~L 400 (407)
-......+.++.+. -+++|++-|+|.++++++++.+.| +|.|.+|..++..| -+.+.+++|
T Consensus 672 ~~~~~~~~~~ik~~--------~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP~~~~~~~~~~ 734 (765)
T PRK08255 672 RMYQTPFADRIRNE--------AGIATIAVGAISEADHVNSIIAAGRADLCALARPHLADPAWTLHEAAEI 734 (765)
T ss_pred ccccHHHHHHHHHH--------cCCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhCccHHHHHHHHc
No 395
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.77 E-value=0.63 Score=46.84 Aligned_cols=136 Identities=18% Similarity=0.213 Sum_probs=88.9
Q ss_pred CCccHHHHHHhhhhcCCCceEEEEecccCCCcCCCCCCCCHHHHHHHH-HHcCCcE--E--E--EEecC---CcCCCCHH
Q 015424 159 PARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSY-EKGGAAC--L--S--ILTDE---KYFKGSFE 228 (407)
Q Consensus 159 ~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~ay-~~~GA~a--I--S--VLTd~---~~F~Gs~e 228 (407)
..+.|.+++.+ ....|+-=.|..|--- .+++.. .-||+.- + | |+--+ .++++-.+
T Consensus 124 ~t~~~v~~~~~------~~~~i~~TRKT~Pg~R---------~l~k~AV~~GGG~~HR~gLsd~ilIkdNHi~~~G~i~~ 188 (289)
T PRK07896 124 ATAAWVDAVAG------TKAKIRDTRKTLPGLR---------ALQKYAVRCGGGVNHRMGLGDAALIKDNHVAAAGSVVA 188 (289)
T ss_pred HHHHHHHHhcC------CCeEEEecCCCCCcch---------HHHHHHHHhCCCccccCCCcceeeecHHHHHHhCcHHH
Confidence 45667777732 3467887777778421 233222 3344321 1 1 22222 23433336
Q ss_pred HHHHHHhcCCCCcE--EeccccCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHHH
Q 015424 229 NLEAVRSAGVKCPL--LCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDR 303 (407)
Q Consensus 229 dL~~Vr~a~v~lPV--L~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVh---t~eEler 303 (407)
-++.+|+.....|| .+. +..|..+|..+|||.|+|. -++++++++.++..+..+-.+++|++ |++-+..
T Consensus 189 ai~~~r~~~~~~kIeVEv~----tl~ea~eal~~gaDiI~LD--nm~~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~~ 262 (289)
T PRK07896 189 ALRAVRAAAPDLPCEVEVD----SLEQLDEVLAEGAELVLLD--NFPVWQTQEAVQRRDARAPTVLLESSGGLTLDTAAA 262 (289)
T ss_pred HHHHHHHhCCCCCEEEEcC----CHHHHHHHHHcCCCEEEeC--CCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHH
Confidence 67777753123333 343 3569999999999999997 56788999999887777888999998 7888888
Q ss_pred HhcccCCcEEEee
Q 015424 304 VLGIEGIELIGIN 316 (407)
Q Consensus 304 Al~l~Ga~iIGIN 316 (407)
..+. |+|+|++.
T Consensus 263 yA~t-GvD~Is~g 274 (289)
T PRK07896 263 YAET-GVDYLAVG 274 (289)
T ss_pred HHhc-CCCEEEeC
Confidence 8886 99999984
No 396
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=93.77 E-value=0.22 Score=46.93 Aligned_cols=72 Identities=32% Similarity=0.338 Sum_probs=53.7
Q ss_pred HHHHHHHHcCCcEEEEEec-CCcCC-----CCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCC
Q 015424 201 EIARSYEKGGAACLSILTD-EKYFK-----GSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (407)
Q Consensus 201 ~iA~ay~~~GA~aISVLTd-~~~F~-----Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~ 273 (407)
+.++.+.+.||+.|.+..- ..... ..++.++.+++. +++||+.-..|.++.++.++..+|||+|.++.+++.
T Consensus 113 ~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~-~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~ 190 (236)
T cd04730 113 EEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDA-VDIPVIAAGGIADGRGIAAALALGADGVQMGTRFLA 190 (236)
T ss_pred HHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHH-hCCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhc
Confidence 5567777789998876321 00001 235678888876 789999988888889999999999999999887663
No 397
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=93.74 E-value=0.16 Score=51.71 Aligned_cols=79 Identities=15% Similarity=0.162 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHcCCcEEEEEecC------CcCCC-CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcC-CCEEEEec
Q 015424 198 DPVEIARSYEKGGAACLSILTDE------KYFKG-SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIA 269 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~------~~F~G-s~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~G-ADaVLLia 269 (407)
+..++|+.+++.|++.|+|-.-. .++.| ..+..+.+|+. +++||+.-..|.++.+..++...| ||.|.+.=
T Consensus 228 e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~-~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR 306 (337)
T PRK13523 228 DYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREH-ANIATGAVGLITSGAQAEEILQNNRADLIFIGR 306 (337)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhh-cCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhH
Confidence 55688999999999999985321 22344 34566788886 899999999899999999998877 99999987
Q ss_pred cCCCHHHH
Q 015424 270 AVLPDLDI 277 (407)
Q Consensus 270 aiL~~~~L 277 (407)
.++.+.++
T Consensus 307 ~~iadP~~ 314 (337)
T PRK13523 307 ELLRNPYF 314 (337)
T ss_pred HHHhCccH
Confidence 77776666
No 398
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=93.72 E-value=0.18 Score=50.29 Aligned_cols=46 Identities=17% Similarity=0.408 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeecccc
Q 015424 273 PDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNL 320 (407)
Q Consensus 273 ~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL 320 (407)
..+-|..|.+.+++.||-++.||-|.++++.+.+. +|+|-|..||.
T Consensus 94 ge~gL~~l~~a~~~~Gl~vvtEvm~~~~~e~~~~y--~DilqvGARNM 139 (286)
T COG2876 94 GEEGLKLLKRAADETGLPVVTEVMDVRDVEAAAEY--ADILQVGARNM 139 (286)
T ss_pred CHHHHHHHHHHHHHcCCeeEEEecCHHHHHHHHhh--hhHHHhcccch
Confidence 44678889999999999999999999999999984 79999999988
No 399
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=93.71 E-value=0.41 Score=47.14 Aligned_cols=88 Identities=20% Similarity=0.339 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhccccccccc
Q 015424 274 DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQ 353 (407)
Q Consensus 274 ~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~ 353 (407)
.+.|+.|.++++++||.++.|+++.+.++.+.++ ++++-|-.++. . |+.....+.+
T Consensus 75 ~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~--~d~lkI~s~~~---------~----n~~LL~~~a~--------- 130 (260)
T TIGR01361 75 EEGLKLLRRAADEHGLPVVTEVMDPRDVEIVAEY--ADILQIGARNM---------Q----NFELLKEVGK--------- 130 (260)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeCChhhHHHHHhh--CCEEEECcccc---------c----CHHHHHHHhc---------
Confidence 5679999999999999999999999999999885 78999987777 3 2233333332
Q ss_pred CCceEEEeeCCC-CHHHHHH----HHHcCCCEEEEcc
Q 015424 354 KNIIVVGESGLF-TPDDIAY----VQEAGVKAVLVGE 385 (407)
Q Consensus 354 ~~v~vVAESGI~-t~eD~~~----l~~~GadaVLVGe 385 (407)
.+.+|+..-|.. +++|+.. +.+.|.+-+++-+
T Consensus 131 ~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~ 167 (260)
T TIGR01361 131 QGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCE 167 (260)
T ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEE
Confidence 467899999999 9998754 5567887777743
No 400
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=93.69 E-value=0.13 Score=50.20 Aligned_cols=61 Identities=8% Similarity=-0.012 Sum_probs=47.3
Q ss_pred cCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 334 VDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 334 vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
.+.+...++.+. -.+++-..|||+|.+|++.+.++|++-|+||+..++.++..+.+.+.++
T Consensus 61 ~n~~~i~~i~~~--------~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g 121 (243)
T TIGR01919 61 NNEMMLEEVVKL--------LVVVEELSGGRRDDSSLRAALTGGRARVNGGTAALENPWWAAAVIRYGG 121 (243)
T ss_pred chHHHHHHHHHH--------CCCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHcc
Confidence 344455566553 2357788999999999999999999999999999998877666655544
No 401
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=93.69 E-value=1.6 Score=43.83 Aligned_cols=141 Identities=12% Similarity=0.088 Sum_probs=91.5
Q ss_pred CCCccHHHHHHhhhhcCCCceEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEEe--cCC--------cCCC--
Q 015424 158 PPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILT--DEK--------YFKG-- 225 (407)
Q Consensus 158 ~~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVLT--d~~--------~F~G-- 225 (407)
..++.|.++++... . -.-|+.=.|..|-- -.+++.....|....|-+. |.- +++|
T Consensus 108 T~T~~~V~~~~~~~---~-~~~I~~TRKT~Pg~---------R~l~k~AV~~GGg~~HR~gLsd~vLikdNHi~~~g~~~ 174 (284)
T PRK06096 108 DYLAQMLALLRERY---P-DGNIACTRKAIPGT---------RLLATQAVLAAGGLIHRAGCAETILLFANHRHFLHDPQ 174 (284)
T ss_pred HHHHHHHHHHHhhC---C-CcEEEecCcCCCch---------hHHHHHHHHcCCCcCccCCcchhhhhHHHHHHHhCCcc
Confidence 45678888887542 2 24566666666632 2355655666655566432 221 2221
Q ss_pred C-HHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHH
Q 015424 226 S-FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREM 301 (407)
Q Consensus 226 s-~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVh---t~eEl 301 (407)
+ .+-++.+|+.....+|.. + .-+..|+.+|..+|||.|+|. -++++++++.++..++.+..+.+|++ |.+-+
T Consensus 175 ~i~~av~~~r~~~~~~kIeV-E-v~tleqa~ea~~agaDiI~LD--n~~~e~l~~av~~~~~~~~~~~leaSGGI~~~ni 250 (284)
T PRK06096 175 DWSGAINQLRRHAPEKKIVV-E-ADTPKEAIAALRAQPDVLQLD--KFSPQQATEIAQIAPSLAPHCTLSLAGGINLNTL 250 (284)
T ss_pred cHHHHHHHHHHhCCCCCEEE-E-CCCHHHHHHHHHcCCCEEEEC--CCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHH
Confidence 2 244555565311222221 1 136789999999999999995 57788999999887766678899999 88888
Q ss_pred HHHhcccCCcEEEee
Q 015424 302 DRVLGIEGIELIGIN 316 (407)
Q Consensus 302 erAl~l~Ga~iIGIN 316 (407)
...... |+|+|.+.
T Consensus 251 ~~yA~t-GvD~Is~g 264 (284)
T PRK06096 251 KNYADC-GIRLFITS 264 (284)
T ss_pred HHHHhc-CCCEEEEC
Confidence 888886 99998663
No 402
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=93.64 E-value=0.4 Score=46.46 Aligned_cols=91 Identities=14% Similarity=0.054 Sum_probs=61.5
Q ss_pred CCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHH
Q 015424 296 HDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQE 375 (407)
Q Consensus 296 ht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~ 375 (407)
.|+.++-+.....|++-+=|- || -+. .....+.+...++.+. ...++-..|||+|.+|++++.+
T Consensus 30 ~dP~~~a~~~~~~ga~~lhiv--DL----d~a--~~~~~n~~~i~~i~~~--------~~~~v~vGGGIrs~e~~~~~l~ 93 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVV--DL----DAA--EGVGNNEMYIKEISKI--------GFDWIQVGGGIRDIEKAKRLLS 93 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEE--EC----CCc--CCCcchHHHHHHHHhh--------CCCCEEEeCCcCCHHHHHHHHH
Confidence 566666666544477765553 33 000 1222344555555442 1126778999999999999999
Q ss_pred cCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 376 AGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 376 ~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
.|++-|+||+...+.++..+.+.+.++
T Consensus 94 ~Ga~kvvigt~a~~~p~~~~~~~~~~g 120 (232)
T PRK13586 94 LDVNALVFSTIVFTNFNLFHDIVREIG 120 (232)
T ss_pred CCCCEEEECchhhCCHHHHHHHHHHhC
Confidence 999999999999998877776666664
No 403
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=93.58 E-value=0.64 Score=47.37 Aligned_cols=169 Identities=19% Similarity=0.251 Sum_probs=105.7
Q ss_pred HHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCc--EEecccc-CCHHHHHHHHHcCCCEEEE--eccCCCH
Q 015424 200 VEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCP--LLCKEFI-VDAWQIYYARTKGADAVLL--IAAVLPD 274 (407)
Q Consensus 200 ~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lP--VL~KDFI-id~~QI~eAr~~GADaVLL--iaaiL~~ 274 (407)
..+.+..++.|..||-|-.|...++--..|++ .. ..+| +-.|+|= .+.-.+.++...|...-.. +-.-++-
T Consensus 137 ~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D~~---n~-f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W 212 (363)
T KOG0538|consen 137 EQLVKRAEKAGFKALVLTVDTPRLGRRESDIK---NK-FSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSW 212 (363)
T ss_pred HHHHHHHHHcCceEEEEEeccccccCchhhhh---hc-ccCCcccccccccccccccCCcccchhhhhhhhcCCCCCCCh
Confidence 45678899999999999888888887777764 32 4455 3356652 2222233333333322221 2234455
Q ss_pred HHHHHHHHHHHHcCCcE-EEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhccccccccc
Q 015424 275 LDIRYMTKICKLLGLTA-LVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQ 353 (407)
Q Consensus 275 ~~L~~Li~~a~~LGL~a-LVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~ 353 (407)
.|++.|-... .|.. +--|-+.+++..|.+. |++=|=+.|-.- -.- ....-.++...++++.+ .
T Consensus 213 ~Di~wLr~~T---~LPIvvKGilt~eDA~~Ave~-G~~GIIVSNHGg--RQl----D~vpAtI~~L~Evv~aV------~ 276 (363)
T KOG0538|consen 213 KDIKWLRSIT---KLPIVVKGVLTGEDARKAVEA-GVAGIIVSNHGG--RQL----DYVPATIEALPEVVKAV------E 276 (363)
T ss_pred hhhHHHHhcC---cCCeEEEeecccHHHHHHHHh-CCceEEEeCCCc--ccc----CcccchHHHHHHHHHHh------c
Confidence 6775554432 3333 4457799999999997 887555544321 000 11112233444555442 2
Q ss_pred CCceEEEeeCCCCHHHHHHHHHcCCCEEEEccccc
Q 015424 354 KNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIV 388 (407)
Q Consensus 354 ~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLm 388 (407)
..+.|..-||+.+-.|+-+...+||.+|+||.-++
T Consensus 277 ~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v 311 (363)
T KOG0538|consen 277 GRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIV 311 (363)
T ss_pred CceEEEEecCcccchHHHHHHhcccceEEecCchh
Confidence 45789999999999999999999999999998765
No 404
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.58 E-value=0.88 Score=48.99 Aligned_cols=116 Identities=20% Similarity=0.226 Sum_probs=81.9
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCC--CcEEeccccCCHHHHHHHHHcCCCEEEE----e---
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVK--CPLLCKEFIVDAWQIYYARTKGADAVLL----I--- 268 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~--lPVL~KDFIid~~QI~eAr~~GADaVLL----i--- 268 (407)
+..+.|++..++|++.|-|-+-+.+-..-.+.++.+|+. .. ++|.+.. |.++.+...+..+|||+|.+ +
T Consensus 242 ~~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~-~~~~~~V~aGn-V~t~e~a~~li~aGAd~I~vg~g~Gs~c 319 (502)
T PRK07107 242 DYAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREK-YGDSVKVGAGN-VVDREGFRYLAEAGADFVKVGIGGGSIC 319 (502)
T ss_pred hHHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHh-CCCCceEEecc-ccCHHHHHHHHHcCCCEEEECCCCCcCc
Confidence 456889999999999988754444333337889999875 43 4455544 68889999999999999977 1
Q ss_pred -cc-C--CCHHHHHHHHHHHHH-------cC--CcEEEE--eCCHHHHHHHhcccCCcEEEee
Q 015424 269 -AA-V--LPDLDIRYMTKICKL-------LG--LTALVE--VHDEREMDRVLGIEGIELIGIN 316 (407)
Q Consensus 269 -aa-i--L~~~~L~~Li~~a~~-------LG--L~aLVE--Vht~eElerAl~l~Ga~iIGIN 316 (407)
++ . ....++..+.+.+.. .| +.+|.+ +++-.++-+|+.+ ||+.+.+-
T Consensus 320 ~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~-GA~~vm~G 381 (502)
T PRK07107 320 ITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAM-GADFIMLG 381 (502)
T ss_pred ccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHc-CCCeeeeC
Confidence 11 1 122345555544442 36 677776 6799999999998 99998883
No 405
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=93.58 E-value=0.36 Score=47.35 Aligned_cols=45 Identities=24% Similarity=0.293 Sum_probs=37.8
Q ss_pred CHHHHHHHHhcCCCCcEEeccccC-CHHHHHHHHHcCCCEEEEeccCC
Q 015424 226 SFENLEAVRSAGVKCPLLCKEFIV-DAWQIYYARTKGADAVLLIAAVL 272 (407)
Q Consensus 226 s~edL~~Vr~a~v~lPVL~KDFIi-d~~QI~eAr~~GADaVLLiaaiL 272 (407)
..+.++.+|+. ++.||.+ ||.| ++.|+.++..+|||+|+.+.++.
T Consensus 186 ~~~~i~~lr~~-~~~pi~v-gfGI~~~e~~~~~~~~GADgvVvGSaiv 231 (256)
T TIGR00262 186 LNELVKRLKAY-SAKPVLV-GFGISKPEQVKQAIDAGADGVIVGSAIV 231 (256)
T ss_pred HHHHHHHHHhh-cCCCEEE-eCCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 36778888886 7899888 6655 59999999999999999998765
No 406
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=93.52 E-value=1.8 Score=39.73 Aligned_cols=108 Identities=17% Similarity=0.262 Sum_probs=70.0
Q ss_pred HHHHHHHcCCCEEEEeccCCCHHHH----HHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeecccccccccccc
Q 015424 253 QIYYARTKGADAVLLIAAVLPDLDI----RYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYR 328 (407)
Q Consensus 253 QI~eAr~~GADaVLLiaaiL~~~~L----~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t 328 (407)
++.++...|++.|.|-..-++..++ .++...|+..|+..++. +. .+.+.++ |++-+=+...++
T Consensus 18 ~~~~~~~~g~~~v~lR~~~~~~~~~~~~~~~l~~~~~~~~~~l~i~--~~--~~la~~~-g~~GvHl~~~~~-------- 84 (196)
T TIGR00693 18 RVEAALKGGVTLVQLRDKGSNTRERLALAEKLQELCRRYGVPFIVN--DR--VDLALAL-GADGVHLGQDDL-------- 84 (196)
T ss_pred HHHHHHhcCCCEEEEecCCCCHHHHHHHHHHHHHHHHHhCCeEEEE--CH--HHHHHHc-CCCEEecCcccC--------
Confidence 5777889999999887766666554 44556666779888874 33 4456665 666444432222
Q ss_pred ccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015424 329 TETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 390 (407)
Q Consensus 329 ~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~ 390 (407)
+.....++.. .+ .+....+++.+++.++.+.|+|-+.+|.-+...
T Consensus 85 ------~~~~~r~~~~---------~~--~~ig~s~h~~~e~~~a~~~g~dyi~~~~v~~t~ 129 (196)
T TIGR00693 85 ------PASEARALLG---------PD--KIIGVSTHNLEELAEAEAEGADYIGFGPIFPTP 129 (196)
T ss_pred ------CHHHHHHhcC---------CC--CEEEEeCCCHHHHHHHhHcCCCEEEECCccCCC
Confidence 2222222221 12 233566999999999999999999988766543
No 407
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=93.49 E-value=6.2 Score=37.59 Aligned_cols=117 Identities=19% Similarity=0.202 Sum_probs=75.4
Q ss_pred CCCHHHHHHHHHHcCCcEEEEEecCC-----cCCCCHHHHHHHHhcCCCCcE--EeccccCCHHHHHHHHHcCCCEEEEe
Q 015424 196 DFDPVEIARSYEKGGAACLSILTDEK-----YFKGSFENLEAVRSAGVKCPL--LCKEFIVDAWQIYYARTKGADAVLLI 268 (407)
Q Consensus 196 ~~dp~~iA~ay~~~GA~aISVLTd~~-----~F~Gs~edL~~Vr~a~v~lPV--L~KDFIid~~QI~eAr~~GADaVLLi 268 (407)
..+..++++.+.+.|...|=+-.=.. .+...++.++.+++...++++ ++.-. ...+..+..+|+|.|.+.
T Consensus 18 ~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~---~~~i~~a~~~g~~~i~i~ 94 (265)
T cd03174 18 TEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNR---EKGIERALEAGVDEVRIF 94 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCc---hhhHHHHHhCCcCEEEEE
Confidence 34566778888888988877632111 113445667777764213444 33221 667888999999999987
Q ss_pred ccCC--------------CHHHHHHHHHHHHHcCCcEEEEe-------CCHHH----HHHHhcccCCcEEEee
Q 015424 269 AAVL--------------PDLDIRYMTKICKLLGLTALVEV-------HDERE----MDRVLGIEGIELIGIN 316 (407)
Q Consensus 269 aaiL--------------~~~~L~~Li~~a~~LGL~aLVEV-------ht~eE----lerAl~l~Ga~iIGIN 316 (407)
...- .-+.....++++++.|+++.+-+ ++.++ ++++.++ |++.|.+.
T Consensus 95 ~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~-g~~~i~l~ 166 (265)
T cd03174 95 DSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEA-GADEISLK 166 (265)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHc-CCCEEEec
Confidence 7654 23556778888899999986555 44444 3555665 88888874
No 408
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=93.47 E-value=0.38 Score=47.23 Aligned_cols=82 Identities=23% Similarity=0.201 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHcCCcEEEEEe-cCCcCCCCHHHHHHHHhcCC--CCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCCH
Q 015424 198 DPVEIARSYEKGGAACLSILT-DEKYFKGSFENLEAVRSAGV--KCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPD 274 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLT-d~~~F~Gs~edL~~Vr~a~v--~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~ 274 (407)
+..++.+ ..+.||+.|.+.. |-..|.=+++....+.+. . +.|+++-..|.++.++.+++.+|||+|+++.++...
T Consensus 169 ~~~E~~~-A~~~gadiIgin~rdl~~~~~d~~~~~~l~~~-~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~ 246 (260)
T PRK00278 169 DEEELER-ALKLGAPLIGINNRNLKTFEVDLETTERLAPL-IPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRA 246 (260)
T ss_pred CHHHHHH-HHHcCCCEEEECCCCcccccCCHHHHHHHHHh-CCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCC
Confidence 4445533 4577999999863 223555567777777664 3 358999999999999999999999999999999866
Q ss_pred HHHHHHH
Q 015424 275 LDIRYMT 281 (407)
Q Consensus 275 ~~L~~Li 281 (407)
++....+
T Consensus 247 ~dp~~~~ 253 (260)
T PRK00278 247 DDPGAAL 253 (260)
T ss_pred CCHHHHH
Confidence 5554433
No 409
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=93.47 E-value=4.8 Score=39.62 Aligned_cols=173 Identities=15% Similarity=0.098 Sum_probs=102.0
Q ss_pred HHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhc--CCCCc-EEeccccCCHHHHHHHHHcCCCEEEEeccCCCHHHH
Q 015424 201 EIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSA--GVKCP-LLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDI 277 (407)
Q Consensus 201 ~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a--~v~lP-VL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L 277 (407)
.+++.+...|-+.+-+ |-++-..+++.+..+-.+ ...++ ++|= --.|+..|..+..+||++|++ --+-+.++.
T Consensus 31 ~~~e~~a~~G~D~v~i--D~EHg~~~~~~~~~~i~a~~~~g~~~lVRv-p~~~~~~i~r~LD~Ga~giiv-P~v~tae~a 106 (256)
T PRK10558 31 ITTEVLGLAGFDWLVL--DGEHAPNDVSTFIPQLMALKGSASAPVVRV-PTNEPVIIKRLLDIGFYNFLI-PFVETAEEA 106 (256)
T ss_pred HHHHHHHhcCCCEEEE--ccccCCCCHHHHHHHHHHHhhcCCCcEEEC-CCCCHHHHHHHhCCCCCeeee-cCcCCHHHH
Confidence 4788888899988765 555555677777654321 13444 4443 236899999999999999955 556677788
Q ss_pred HHHHHHHHHc----------------------------CCcEEEEeCCHHH---HHHHhcccCCcEEEeecccccccccc
Q 015424 278 RYMTKICKLL----------------------------GLTALVEVHDERE---MDRVLGIEGIELIGINNRNLAISIFS 326 (407)
Q Consensus 278 ~~Li~~a~~L----------------------------GL~aLVEVht~eE---lerAl~l~Ga~iIGINnRdL~~~~~~ 326 (407)
+.+++.|+-. .+.+++-+-|.+- ++..+..+|.+.+-+-.-||..+..
T Consensus 107 ~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an~~~~vi~~IEt~~av~ni~eI~av~gvd~l~iG~~DLs~slG- 185 (256)
T PRK10558 107 RRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITVLVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALG- 185 (256)
T ss_pred HHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhccccEEEEEECCHHHHHHHHHHhCCCCCcEEEECHHHHHHHcC-
Confidence 8877655421 1123444444433 3444444577877777778855443
Q ss_pred ccccccccCchhH-HHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcc
Q 015424 327 YRTETFEVDNSNT-KKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGE 385 (407)
Q Consensus 327 ~t~~Tf~vDl~~t-~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGe 385 (407)
+........+... .+++...+ ..++.+ .-...++++++++.+.|++-+.+|.
T Consensus 186 ~~~~~~~~~v~~a~~~v~~aa~-----~~G~~~--g~~~~~~~~~~~~~~~G~~~v~~~~ 238 (256)
T PRK10558 186 HLGNASHPDVQKAIQHIFARAK-----AHGKPS--GILAPVEADARRYLEWGATFVAVGS 238 (256)
T ss_pred CCCCCCCHHHHHHHHHHHHHHH-----HcCCce--EEcCCCHHHHHHHHHcCCCEEEEch
Confidence 2211111222221 12222211 123322 1123688999999999999999995
No 410
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=93.46 E-value=0.78 Score=41.15 Aligned_cols=134 Identities=18% Similarity=0.086 Sum_probs=79.8
Q ss_pred CceEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEEecCCcCCCC------HHHHHHHHhcC-CCCcEEeccc-
Q 015424 176 LPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGS------FENLEAVRSAG-VKCPLLCKEF- 247 (407)
Q Consensus 176 ~~~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs------~edL~~Vr~a~-v~lPVL~KDF- 247 (407)
++.||+-+-..+. . ....+..+.++.+.+.||+++.+.. +.|+.-+ .++++.+++.. .++||+....
T Consensus 48 ~~~v~~~v~~~~~---~-~~~~~~~~~a~~a~~~Gad~i~v~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p 122 (201)
T cd00945 48 DVPVIVVVGFPTG---L-TTTEVKVAEVEEAIDLGADEIDVVI-NIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILET 122 (201)
T ss_pred CCeEEEEecCCCC---C-CcHHHHHHHHHHHHHcCCCEEEEec-cHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEEC
Confidence 5677866533321 1 1234677889999999999999865 3344444 67777787751 2799986553
Q ss_pred --cCCHHHHHH----HHHcCCCEEEEeccCC----CHHHHHHHHHHHH-HcCCcEEEEeCCHHHHHHHhcccCCcEEEe
Q 015424 248 --IVDAWQIYY----ARTKGADAVLLIAAVL----PDLDIRYMTKICK-LLGLTALVEVHDEREMDRVLGIEGIELIGI 315 (407)
Q Consensus 248 --Iid~~QI~e----Ar~~GADaVLLiaaiL----~~~~L~~Li~~a~-~LGL~aLVEVht~eElerAl~l~Ga~iIGI 315 (407)
..++.++.+ +...|+|+|=.-.... +...+..+.+... ...+.+.--+.+.+.+..++.+ |++-+++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~-Ga~g~~~ 200 (201)
T cd00945 123 RGLKTADEIAKAARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEA-GADGIGT 200 (201)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHh-ccceeec
Confidence 124554443 3578999987654321 2334444433221 1223333334456888898887 8876543
No 411
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=93.45 E-value=1.3 Score=45.67 Aligned_cols=127 Identities=15% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHcCCCEEEEeccC--------------CCH----------HHHHHHHHHHHH-cCCcEEEEe--------------
Q 015424 255 YYARTKGADAVLLIAAV--------------LPD----------LDIRYMTKICKL-LGLTALVEV-------------- 295 (407)
Q Consensus 255 ~eAr~~GADaVLLiaai--------------L~~----------~~L~~Li~~a~~-LGL~aLVEV-------------- 295 (407)
..|..+|.|+|-|-++- .+| .-+.++++..++ .|=+..|-|
T Consensus 151 ~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~ 230 (361)
T cd04747 151 ADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARL 230 (361)
T ss_pred HHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCC
Q ss_pred -CCHHHHHHH----hcccCCcEEEeecccccccccccccccccc---CchhHHHHhhcccccccccCCceEEEeeCC---
Q 015424 296 -HDEREMDRV----LGIEGIELIGINNRNLAISIFSYRTETFEV---DNSNTKKLLEGERGEIIRQKNIIVVGESGL--- 364 (407)
Q Consensus 296 -ht~eElerA----l~l~Ga~iIGINnRdL~~~~~~~t~~Tf~v---Dl~~t~~L~~~~~~~~i~~~~v~vVAESGI--- 364 (407)
.+.+|+... .+. |+++|-+...+. ..... +......+.+. .++++++-|||
T Consensus 231 g~~~~e~~~~~~~l~~~-gvd~i~vs~g~~---------~~~~~~~~~~~~~~~~k~~--------~~~pv~~~G~i~~~ 292 (361)
T cd04747 231 ADTPDELEALLAPLVDA-GVDIFHCSTRRF---------WEPEFEGSELNLAGWTKKL--------TGLPTITVGSVGLD 292 (361)
T ss_pred CCCHHHHHHHHHHHHHc-CCCEEEecCCCc---------cCCCcCccchhHHHHHHHH--------cCCCEEEECCcccc
Q ss_pred ---------------CCHHHHHHHHHcC-CCEEEEcccccCCCChHHHHHh
Q 015424 365 ---------------FTPDDIAYVQEAG-VKAVLVGESIVKQDDPGKGITG 399 (407)
Q Consensus 365 ---------------~t~eD~~~l~~~G-adaVLVGeaLmk~~dp~~~i~~ 399 (407)
.|++++..+.+.| ||.|-+|.+++..++...++++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~ 343 (361)
T cd04747 293 GDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLSDPAWVAKVRE 343 (361)
T ss_pred cccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHhCcHHHHHHHc
No 412
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=93.32 E-value=6.8 Score=40.69 Aligned_cols=147 Identities=10% Similarity=-0.046 Sum_probs=93.9
Q ss_pred CCCcEE-eccccCCH--HHHHHHHHcC-----------CCEEEEeccCCCHH----HHHHHHHHHHHcCCcEEE------
Q 015424 238 VKCPLL-CKEFIVDA--WQIYYARTKG-----------ADAVLLIAAVLPDL----DIRYMTKICKLLGLTALV------ 293 (407)
Q Consensus 238 v~lPVL-~KDFIid~--~QI~eAr~~G-----------ADaVLLiaaiL~~~----~L~~Li~~a~~LGL~aLV------ 293 (407)
.++||- .-|-..+. ..|..|..+| .+.|..+.+-|+-+ .-++.+++||..|+.+=.
T Consensus 98 a~VPValHLDHg~~~~~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS~lpfeENI~~TrevVe~Ah~~GvsVEaELG~vg 177 (357)
T TIGR01520 98 YGVPVVLHTDHCAKKLLPWVDGLLEAGEKYFSAHGKPLFSSHMIDLSEEPIEENIEICVKYLKRMAKIKMWLEIEIGITG 177 (357)
T ss_pred CCCCEEEECCCCCCcchHHHHHHHHhhhhhhhhcCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccC
Confidence 478874 56666665 3477777775 99999999999653 456788889988776611
Q ss_pred --------E-------eCCHHHHHHHhccc----CCcEEEeecccccccccc-ccccccccCchhHHHHhhcccc-cccc
Q 015424 294 --------E-------VHDEREMDRVLGIE----GIELIGINNRNLAISIFS-YRTETFEVDNSNTKKLLEGERG-EIIR 352 (407)
Q Consensus 294 --------E-------Vht~eElerAl~l~----Ga~iIGINnRdL~~~~~~-~t~~Tf~vDl~~t~~L~~~~~~-~~i~ 352 (407)
+ -.|.+|+.+..+-. |+|.+.+. +|+-=| |.+.+...|++...++...+.. -.++
T Consensus 178 G~Ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~TgvD~LAvA----iGT~HG~Yk~~~p~Ld~d~L~~I~~~~~~~~~vP 253 (357)
T TIGR01520 178 GEEDGVDNSHMDAEALYTQPEDVYYAYEELSKISPNFSIAAA----FGNVHGVYKPGNVKLTPDILADGQEYVSEKLGLP 253 (357)
T ss_pred CccCCcccccccccccCCCHHHHHHHHHHhccCCCcceeeee----eccccCCcCCCCCccCHHHHHHHHHHHHHhcCCC
Confidence 1 24677777765421 56766653 122222 3234567898888888422110 0111
Q ss_pred -cCCceEEE--eeCCCCHHHHHHHHHcCCCEEEEcccccC
Q 015424 353 -QKNIIVVG--ESGLFTPDDIAYVQEAGVKAVLVGESIVK 389 (407)
Q Consensus 353 -~~~v~vVA--ESGI~t~eD~~~l~~~GadaVLVGeaLmk 389 (407)
.+++++|. .||+ +.++++++.++|+.-|=|++.+..
T Consensus 254 ~~~~~pLVLHGgSGi-~~e~i~kai~~GI~KINi~Tdl~~ 292 (357)
T TIGR01520 254 AAKPLFFVFHGGSGS-TKQEIKEALSYGVVKMNIDTDTQW 292 (357)
T ss_pred cCCCCcEEEeCCCCC-CHHHHHHHHHCCCeEEEeCcHHHH
Confidence 02222554 5566 568999999999999999998754
No 413
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=93.28 E-value=0.12 Score=51.88 Aligned_cols=81 Identities=21% Similarity=0.363 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHcCCcEEEEE--ecCCcCCC--CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHc-CCCEEEEecc
Q 015424 196 DFDPVEIARSYEKGGAACLSIL--TDEKYFKG--SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTK-GADAVLLIAA 270 (407)
Q Consensus 196 ~~dp~~iA~ay~~~GA~aISVL--Td~~~F~G--s~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~-GADaVLLiaa 270 (407)
..+..++++..++.|+++|.|- |-...|.| +++.+..+++. +++||+..+-|.+..++.+.... |||+|.+.-.
T Consensus 137 ~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~-~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRg 215 (309)
T PF01207_consen 137 PEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEA-LPIPVIANGDIFSPEDAERMLEQTGADGVMIGRG 215 (309)
T ss_dssp CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC--TSEEEEESS--SHHHHHHHCCCH-SSEEEESHH
T ss_pred hhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhc-ccceeEEcCccCCHHHHHHHHHhcCCcEEEEchh
Confidence 3358899999999999999887 56666766 45666666776 88999998889999999887655 9999999888
Q ss_pred CCCHHHH
Q 015424 271 VLPDLDI 277 (407)
Q Consensus 271 iL~~~~L 277 (407)
++.+..+
T Consensus 216 al~nP~l 222 (309)
T PF01207_consen 216 ALGNPWL 222 (309)
T ss_dssp HCC-CCH
T ss_pred hhhcCHH
Confidence 8877655
No 414
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=93.28 E-value=3.4 Score=38.65 Aligned_cols=123 Identities=25% Similarity=0.219 Sum_probs=77.2
Q ss_pred CceEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCC--cEEEEEecCCcCCCCHHHHHHHHhcCCCCcE--EeccccCCH
Q 015424 176 LPALIAEVKKASPSRGILREDFDPVEIARSYEKGGA--ACLSILTDEKYFKGSFENLEAVRSAGVKCPL--LCKEFIVDA 251 (407)
Q Consensus 176 ~~~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA--~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPV--L~KDFIid~ 251 (407)
+..++.|+|-..+. ...-...+...+.+.|. ..+-+- .| +.+.|..+|+...++|+ +.....-+.
T Consensus 100 ~~~l~iEiK~~~~~-----~~~~~~~v~~~l~~~~~~~~~v~~~----Sf--~~~~l~~~~~~~p~~~~~~l~~~~~~~~ 168 (229)
T cd08562 100 GLGLNLEIKPDPGD-----EALTARVVAAALRELWPHASKLLLS----SF--SLEALRAARRAAPELPLGLLFDTLPADW 168 (229)
T ss_pred CCEEEEEECCCCCc-----cHHHHHHHHHHHHHhcCCcCCEEEE----CC--CHHHHHHHHHhCCCCcEEEEecCCCcCH
Confidence 46799999965442 11112234555566654 333332 12 67888888875334544 222221122
Q ss_pred HHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEE-eCCHHHHHHHhcccCCcEEEee
Q 015424 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVE-VHDEREMDRVLGIEGIELIGIN 316 (407)
Q Consensus 252 ~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVE-Vht~eElerAl~l~Ga~iIGIN 316 (407)
...+...|++++.+....++. ++++.+++.|+.+++= |.+.+++++++.+ |++.|-.+
T Consensus 169 --~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~g~~v~~wTvn~~~~~~~~~~~-gVdgiiTD 227 (229)
T cd08562 169 --LELLAALGAVSIHLNYRGLTE----EQVKALKDAGYKLLVYTVNDPARAAELLEW-GVDAIFTD 227 (229)
T ss_pred --HHHHHHcCCeEEecChhhCCH----HHHHHHHHCCCEEEEEeCCCHHHHHHHHHC-CCCEEEcC
Confidence 333567899988877666654 4788999999999765 6689999999998 88766543
No 415
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=93.27 E-value=1.6 Score=43.38 Aligned_cols=101 Identities=15% Similarity=0.168 Sum_probs=80.1
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHH-cCCCEEEEeccCCC-HH
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYART-KGADAVLLIAAVLP-DL 275 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~-~GADaVLLiaaiL~-~~ 275 (407)
+..++++.+++.|...| |+.+..-+++.++.+++. +++||...+-+.++.++..... .++|.|.+....+. -.
T Consensus 192 ~A~~~~~~l~~~~l~~i----EeP~~~~d~~~~~~L~~~-~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~ 266 (316)
T cd03319 192 EAVELLRELAELGVELI----EQPVPAGDDDGLAYLRDK-SPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLT 266 (316)
T ss_pred HHHHHHHHHHhcCCCEE----ECCCCCCCHHHHHHHHhc-CCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHH
Confidence 56677788888876655 566666688999999986 8999999888899999888655 68999999888874 46
Q ss_pred HHHHHHHHHHHcCCcEEEEeCCHHHHHH
Q 015424 276 DIRYMTKICKLLGLTALVEVHDEREMDR 303 (407)
Q Consensus 276 ~L~~Li~~a~~LGL~aLVEVht~eEler 303 (407)
+..++..+|+..|+.++.-.|-+..+-.
T Consensus 267 ~~~~~~~~a~~~gi~~~~~~~~~~~i~~ 294 (316)
T cd03319 267 EALRIADLARAAGLKVMVGCMVESSLSI 294 (316)
T ss_pred HHHHHHHHHHHcCCCEEEECchhhHHHH
Confidence 7888999999999999987665444433
No 416
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=93.25 E-value=9.4 Score=37.97 Aligned_cols=174 Identities=19% Similarity=0.171 Sum_probs=106.8
Q ss_pred HHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHH-Hhc-CCC-CcEEeccccCCHHHHHHHHHcCCCEEEEeccCCCHHHH
Q 015424 201 EIARSYEKGGAACLSILTDEKYFKGSFENLEAV-RSA-GVK-CPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDI 277 (407)
Q Consensus 201 ~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~V-r~a-~v~-lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L 277 (407)
.+++.+...|-+.+-+-. ++-.-+.+++... +.. ... .|+.|-- --+++.|..++.+||++|++ --+-+.++.
T Consensus 30 ~~~E~~a~~GfD~v~iD~--EHg~~~~~~l~~~i~a~~~~g~~~lVRvp-~~~~~~i~r~LD~GA~GIiv-P~V~saeeA 105 (267)
T PRK10128 30 YMAEIAATSGYDWLLIDG--EHAPNTIQDLYHQLQAIAPYASQPVIRPV-EGSKPLIKQVLDIGAQTLLI-PMVDTAEQA 105 (267)
T ss_pred HHHHHHHHcCCCEEEEcc--ccCCCCHHHHHHHHHHHHhcCCCeEEECC-CCCHHHHHHHhCCCCCeeEe-cCcCCHHHH
Confidence 477778888999877644 4444567666633 311 123 4555543 25789999999999999987 556677888
Q ss_pred HHHHHHHHHc-------C----------------------CcEEEEeCCHHH---HHHHhcccCCcEEEeeccccccccc
Q 015424 278 RYMTKICKLL-------G----------------------LTALVEVHDERE---MDRVLGIEGIELIGINNRNLAISIF 325 (407)
Q Consensus 278 ~~Li~~a~~L-------G----------------------L~aLVEVht~eE---lerAl~l~Ga~iIGINnRdL~~~~~ 325 (407)
+.+++.++=. | .-+++-+.|.+- ++..+..+|.+.|.+-.-||..+.
T Consensus 106 ~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~~~~vi~qiEt~~a~~n~~~I~~~~gvd~i~~G~~Dls~sl- 184 (267)
T PRK10128 106 RQVVSATRYPPYGERGVGASVARAARWGRIENYMAQANDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADLSASL- 184 (267)
T ss_pred HHHHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhccccEEEEEECCHHHHHhHHHHhCCCCCCEEEECHHHHHHHc-
Confidence 8888877521 1 112444444443 344455568888888888986655
Q ss_pred cccccccccCchh-HHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEccc
Q 015424 326 SYRTETFEVDNSN-TKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGES 386 (407)
Q Consensus 326 ~~t~~Tf~vDl~~-t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGea 386 (407)
+++.....+++.. ..++.+..+ ..++.+ ..-..++++++++.+.|++-|.+|.-
T Consensus 185 g~~~~~~~pev~~ai~~v~~a~~-----~~Gk~~--G~~~~~~~~a~~~~~~G~~~v~~g~D 239 (267)
T PRK10128 185 GYPDNAGHPEVQRIIETSIRRIR-----AAGKAA--GFLAVDPDMAQKCLAWGANFVAVGVD 239 (267)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHH-----HcCCeE--EEcCCCHHHHHHHHHcCCcEEEEChH
Confidence 3333332333222 222222211 123332 12247899999999999999999963
No 417
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=93.25 E-value=10 Score=38.11 Aligned_cols=177 Identities=15% Similarity=0.109 Sum_probs=103.0
Q ss_pred HHHHHHHHHHcCCcEEEEE-ecCCcCCCCHHH-HHHH---Hhc-CCCCcEEeccccCCHH-HH---HHHHHcCCCEEEEe
Q 015424 199 PVEIARSYEKGGAACLSIL-TDEKYFKGSFEN-LEAV---RSA-GVKCPLLCKEFIVDAW-QI---YYARTKGADAVLLI 268 (407)
Q Consensus 199 p~~iA~ay~~~GA~aISVL-Td~~~F~Gs~ed-L~~V---r~a-~v~lPVL~KDFIid~~-QI---~eAr~~GADaVLLi 268 (407)
..++++.+.+.|.++|=++ |-..|+.=|.+. .+.+ ++. +-.+||+..=.-.... .| ..|...|||+|+++
T Consensus 27 ~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v 106 (299)
T COG0329 27 LRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVV 106 (299)
T ss_pred HHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3445667789999999887 222222223333 3322 232 2368999765444332 22 34678999999999
Q ss_pred ccCC---CH-HHHHHHHHHHHHcCCcEEEE-------e-CCHHHHHHHhcccCCcEEEeeccccccccccccccccccCc
Q 015424 269 AAVL---PD-LDIRYMTKICKLLGLTALVE-------V-HDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDN 336 (407)
Q Consensus 269 aaiL---~~-~~L~~Li~~a~~LGL~aLVE-------V-ht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl 336 (407)
.-.. ++ ...+.+...+...++..++= + -+.+.+.+..+ ...++|| ++-.-|+
T Consensus 107 ~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~--~~nivgi--------------Kd~~gd~ 170 (299)
T COG0329 107 PPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLAE--HPNIVGV--------------KDSSGDL 170 (299)
T ss_pred CCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhc--CCCEEEE--------------EeCCcCH
Confidence 8876 32 33445556666667765432 1 24555555444 3579999 6666788
Q ss_pred hhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhh
Q 015424 337 SNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 400 (407)
Q Consensus 337 ~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L 400 (407)
....++.... ++. -.+.-+|- -+.+.-...+|++|++-|.+=+-+.--.+..+.+
T Consensus 171 ~~~~~~~~~~------~~~-~f~v~~G~--d~~~~~~~~~G~~G~is~~~N~~p~~~~~l~~~~ 225 (299)
T COG0329 171 DRLEEIIAAL------GDR-DFIVLSGD--DELALPALLLGADGVISVTANVAPELAVELYRAA 225 (299)
T ss_pred HHHHHHHHhc------Ccc-CeeEEeCc--hHHHHHHHhCCCCeEEecccccCHHHHHHHHHHH
Confidence 8888876642 121 12233443 2333444449999999998776654444333333
No 418
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=93.24 E-value=0.27 Score=50.84 Aligned_cols=90 Identities=22% Similarity=0.180 Sum_probs=61.7
Q ss_pred EEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEEecCCc--CC---CCHHHHHHHHhcCCCCcEEeccccCCHHHH
Q 015424 180 IAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKY--FK---GSFENLEAVRSAGVKCPLLCKEFIVDAWQI 254 (407)
Q Consensus 180 IAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVLTd~~~--F~---Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI 254 (407)
|.++++..|-.=++..-.++. -|+...+.|+++|-|-. -+. +. ..++-|..+++. +++||++-..|.....|
T Consensus 228 i~~ir~~~~~pviiKgV~~~e-da~~a~~~G~d~I~VSn-hGGrqld~~~~~~~~L~ei~~~-~~~~vi~dGGIr~g~Dv 304 (361)
T cd04736 228 LRWLRDLWPHKLLVKGIVTAE-DAKRCIELGADGVILSN-HGGRQLDDAIAPIEALAEIVAA-TYKPVLIDSGIRRGSDI 304 (361)
T ss_pred HHHHHHhCCCCEEEecCCCHH-HHHHHHHCCcCEEEECC-CCcCCCcCCccHHHHHHHHHHH-hCCeEEEeCCCCCHHHH
Confidence 444444443322222223444 56777778999998731 110 01 135677788876 78999999999999999
Q ss_pred HHHHHcCCCEEEEeccCC
Q 015424 255 YYARTKGADAVLLIAAVL 272 (407)
Q Consensus 255 ~eAr~~GADaVLLiaaiL 272 (407)
..|.++|||+|.+.-.+|
T Consensus 305 ~KALaLGA~aV~iGr~~l 322 (361)
T cd04736 305 VKALALGANAVLLGRATL 322 (361)
T ss_pred HHHHHcCCCEEEECHHHH
Confidence 999999999999987766
No 419
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=93.21 E-value=9.3 Score=37.62 Aligned_cols=163 Identities=15% Similarity=0.109 Sum_probs=91.6
Q ss_pred HHHHHHHHHcCCcEEEEEec-CCcCCCCHHH-H---HHHHhc-CCCCcEEeccccCCH-H---HHHHHHHcCCCEEEEec
Q 015424 200 VEIARSYEKGGAACLSILTD-EKYFKGSFEN-L---EAVRSA-GVKCPLLCKEFIVDA-W---QIYYARTKGADAVLLIA 269 (407)
Q Consensus 200 ~~iA~ay~~~GA~aISVLTd-~~~F~Gs~ed-L---~~Vr~a-~v~lPVL~KDFIid~-~---QI~eAr~~GADaVLLia 269 (407)
.++.+.+.+.|+.+|-++.- ..++.=|.+. . +.+++. .-++||+..=.-.+. . +...|..+|||+|+++.
T Consensus 25 ~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~p 104 (292)
T PRK03170 25 RKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVT 104 (292)
T ss_pred HHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECC
Confidence 34566678899999987621 1222223322 2 222332 125898854332222 2 34456789999999987
Q ss_pred cCC---CHHHH-HHHHHHHHHcCCcEEEEe--------CCHHHHHHHhcccCCcEEEeeccccccccccccccccccCch
Q 015424 270 AVL---PDLDI-RYMTKICKLLGLTALVEV--------HDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNS 337 (407)
Q Consensus 270 aiL---~~~~L-~~Li~~a~~LGL~aLVEV--------ht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~ 337 (407)
-.. +++++ +++.+.+...++.+++=- =+.+.+.+..+. ..++|+ ++-..|+.
T Consensus 105 P~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~~~--p~v~gi--------------K~s~~d~~ 168 (292)
T PRK03170 105 PYYNKPTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETVARLAEH--PNIVGI--------------KEATGDLE 168 (292)
T ss_pred CcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHHcC--CCEEEE--------------EECCCCHH
Confidence 754 44444 445555666677765431 145555555443 579999 44445777
Q ss_pred hHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEccccc
Q 015424 338 NTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIV 388 (407)
Q Consensus 338 ~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLm 388 (407)
...++.... +++ ..|.. |-. +.+.....+|++|++-|.+-+
T Consensus 169 ~~~~~~~~~------~~~-~~v~~-G~d--~~~~~~l~~G~~G~is~~~n~ 209 (292)
T PRK03170 169 RVSELIELV------PDD-FAVYS-GDD--ALALPFLALGGVGVISVAANV 209 (292)
T ss_pred HHHHHHHhC------CCC-eEEEE-CCh--HhHHHHHHcCCCEEEEhHHhh
Confidence 777775431 223 33333 321 123455679999999886644
No 420
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=93.18 E-value=1.4 Score=42.70 Aligned_cols=126 Identities=19% Similarity=0.221 Sum_probs=89.0
Q ss_pred cHHHHHHhhhhcCCCceEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCc
Q 015424 162 DFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCP 241 (407)
Q Consensus 162 ~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lP 241 (407)
....++++.. .....+..+.- .|+ . ..+..++++.++..|...| |+.+...+++.++.+++. +++|
T Consensus 117 ~~v~~vr~~~--g~~~~l~vDan-----~~~-~-~~~a~~~~~~l~~~~i~~i----EeP~~~~d~~~~~~l~~~-~~ip 182 (265)
T cd03315 117 AVVAALREAV--GDDAELRVDAN-----RGW-T-PKQAIRALRALEDLGLDYV----EQPLPADDLEGRAALARA-TDTP 182 (265)
T ss_pred HHHHHHHHhc--CCCCEEEEeCC-----CCc-C-HHHHHHHHHHHHhcCCCEE----ECCCCcccHHHHHHHHhh-CCCC
Confidence 3455666542 12355666652 222 1 2355677788888775544 445666789999999986 8999
Q ss_pred EEeccccCCHHHHHHHHHc-CCCEEEEeccCCCH-HHHHHHHHHHHHcCCcEEEEeCCHHHH
Q 015424 242 LLCKEFIVDAWQIYYARTK-GADAVLLIAAVLPD-LDIRYMTKICKLLGLTALVEVHDEREM 301 (407)
Q Consensus 242 VL~KDFIid~~QI~eAr~~-GADaVLLiaaiL~~-~~L~~Li~~a~~LGL~aLVEVht~eEl 301 (407)
|...+-+.++.++.++... ++|.|.+....... .+..++.+.|+..|+.+++-++...-+
T Consensus 183 ia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s~i 244 (265)
T cd03315 183 IMADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIESGL 244 (265)
T ss_pred EEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHHHHHHHHcCCcEEecCccchHH
Confidence 9998888999998887654 58999998887754 567889999999999998876544433
No 421
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=93.17 E-value=0.36 Score=47.39 Aligned_cols=94 Identities=18% Similarity=0.180 Sum_probs=65.6
Q ss_pred EeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHH
Q 015424 294 EVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYV 373 (407)
Q Consensus 294 EVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l 373 (407)
++-|+-|+-+.-.-+|||=+-.-.-.- +...-+++++...+.++.+ .+++-..|||++.+|++++
T Consensus 28 d~GDpVelA~~Y~e~GADElvFlDItA-------s~~gr~~~~~vv~r~A~~v--------fiPltVGGGI~s~eD~~~l 92 (256)
T COG0107 28 DAGDPVELAKRYNEEGADELVFLDITA-------SSEGRETMLDVVERVAEQV--------FIPLTVGGGIRSVEDARKL 92 (256)
T ss_pred hcCChHHHHHHHHHcCCCeEEEEeccc-------ccccchhHHHHHHHHHhhc--------eeeeEecCCcCCHHHHHHH
Confidence 445666665555545776443321110 0122345666666666542 4678889999999999999
Q ss_pred HHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 374 QEAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 374 ~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
..+|||-|=|.++-++.++.-..+.+-+|
T Consensus 93 l~aGADKVSINsaAv~~p~lI~~~a~~FG 121 (256)
T COG0107 93 LRAGADKVSINSAAVKDPELITEAADRFG 121 (256)
T ss_pred HHcCCCeeeeChhHhcChHHHHHHHHHhC
Confidence 99999999999999999998877777776
No 422
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.16 E-value=0.79 Score=46.05 Aligned_cols=138 Identities=17% Similarity=0.260 Sum_probs=87.7
Q ss_pred CCCccHHHHHHhhhhcCCCceEEEEecccCCCcCCCCCCCCHHHHHHHH-HHcCCcE----E--EEEecC---CcCCCCH
Q 015424 158 PPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSY-EKGGAAC----L--SILTDE---KYFKGSF 227 (407)
Q Consensus 158 ~~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~ay-~~~GA~a----I--SVLTd~---~~F~Gs~ 227 (407)
..++.|.+++.+ .-.-|+-=.|..|-- -.+++.+ .-||+.- + +||--+ .+|+|-.
T Consensus 119 T~T~~~v~~~~~------~~~~i~~TRKt~Pg~---------R~l~k~AV~~GGg~~HR~gL~d~ilikdNHi~~~g~i~ 183 (288)
T PRK07428 119 TLTRQYVEKIAD------LPTQLVDTRKTTPGL---------RLLEKYATQVGGAINHRMGLDDAVMIKDNHIQAAGGIG 183 (288)
T ss_pred HHHHHHHHHhcC------CCeEEEecCCCCCcc---------hHHHHHHHHhcCcccccCCchheeeecHHHHHHhCCHH
Confidence 345678877732 235677777777742 1233333 3444420 1 122222 2354444
Q ss_pred HHHHHHHhcCCC--CcEEeccccCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHH
Q 015424 228 ENLEAVRSAGVK--CPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMD 302 (407)
Q Consensus 228 edL~~Vr~a~v~--lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVh---t~eEle 302 (407)
+-+..+|+. .. .+|..- .-+..|+.+|..+|||.|+|+ -++.+++++.++..++..-.+.+|+. |.+.+.
T Consensus 184 ~av~~~r~~-~~~~~~I~VE--v~tleea~eA~~~GaD~I~LD--n~~~e~l~~av~~~~~~~~~i~leAsGGIt~~ni~ 258 (288)
T PRK07428 184 EAITRIRQR-IPYPLTIEVE--TETLEQVQEALEYGADIIMLD--NMPVDLMQQAVQLIRQQNPRVKIEASGNITLETIR 258 (288)
T ss_pred HHHHHHHHh-CCCCCEEEEE--CCCHHHHHHHHHcCCCEEEEC--CCCHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHH
Confidence 566777764 22 222211 134789999999999999998 57778899888877765667788887 888888
Q ss_pred HHhcccCCcEEEee
Q 015424 303 RVLGIEGIELIGIN 316 (407)
Q Consensus 303 rAl~l~Ga~iIGIN 316 (407)
..... |+++|.+-
T Consensus 259 ~ya~t-GvD~Isvg 271 (288)
T PRK07428 259 AVAET-GVDYISSS 271 (288)
T ss_pred HHHHc-CCCEEEEc
Confidence 87886 99999984
No 423
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=93.13 E-value=0.18 Score=50.91 Aligned_cols=94 Identities=32% Similarity=0.343 Sum_probs=64.0
Q ss_pred CCccHHHHHHhhhhcCCCceEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEEe-cCCcCC-----CCHHHHHH
Q 015424 159 PARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILT-DEKYFK-----GSFENLEA 232 (407)
Q Consensus 159 ~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVLT-d~~~F~-----Gs~edL~~ 232 (407)
|+.++...++.. ...||.-+ +| ++.|+...+.|+++|-+-. |-+--. +.+.-+..
T Consensus 124 p~~~~i~~l~~~-----gi~v~~~v----~s----------~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~ 184 (330)
T PF03060_consen 124 PPPEVIERLHAA-----GIKVIPQV----TS----------VREARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQ 184 (330)
T ss_dssp C-HHHHHHHHHT-----T-EEEEEE----SS----------HHHHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHH
T ss_pred chHHHHHHHHHc-----CCcccccc----CC----------HHHHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHH
Confidence 346777888764 35777755 22 3568888999999988763 221111 24666778
Q ss_pred HHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCC
Q 015424 233 VRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (407)
Q Consensus 233 Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (407)
+++. +++||+.-..|.|..++..|..+|||+|.++++.+
T Consensus 185 v~~~-~~iPViaAGGI~dg~~iaaal~lGA~gV~~GTrFl 223 (330)
T PF03060_consen 185 VRDA-VDIPVIAAGGIADGRGIAAALALGADGVQMGTRFL 223 (330)
T ss_dssp HHHH--SS-EEEESS--SHHHHHHHHHCT-SEEEESHHHH
T ss_pred Hhhh-cCCcEEEecCcCCHHHHHHHHHcCCCEeecCCeEE
Confidence 8887 89999999999999999999999999999999877
No 424
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=93.11 E-value=0.58 Score=48.30 Aligned_cols=89 Identities=19% Similarity=0.318 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccc
Q 015424 273 PDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIR 352 (407)
Q Consensus 273 ~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~ 352 (407)
+.+.+..|.++++++||.++.|+|+.++++.+.++ ++++-|-.++. .. +.....+.+
T Consensus 167 ~~e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~--vd~lkI~s~~~---------~n----~~LL~~~a~-------- 223 (360)
T PRK12595 167 GVEGLKILKQVADEYGLAVISEIVNPADVEVALDY--VDVIQIGARNM---------QN----FELLKAAGR-------- 223 (360)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHHh--CCeEEECcccc---------cC----HHHHHHHHc--------
Confidence 45788999999999999999999999999999886 79999988877 33 333334332
Q ss_pred cCCceEEEeeCC-CCHHHHHH----HHHcCCCEEEEcc
Q 015424 353 QKNIIVVGESGL-FTPDDIAY----VQEAGVKAVLVGE 385 (407)
Q Consensus 353 ~~~v~vVAESGI-~t~eD~~~----l~~~GadaVLVGe 385 (407)
.+.+|+..-|. .|++|+.. +.+.|.+-+++-+
T Consensus 224 -~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~e 260 (360)
T PRK12595 224 -VNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCE 260 (360)
T ss_pred -cCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEEC
Confidence 46789999998 69998764 5566887777766
No 425
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=93.07 E-value=0.39 Score=46.21 Aligned_cols=86 Identities=19% Similarity=0.188 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCC------CHHHHHHHHhc----CCCCcEEeccccCCHHHHHHHHHcCCCEEEE
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKG------SFENLEAVRSA----GVKCPLLCKEFIVDAWQIYYARTKGADAVLL 267 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~G------s~edL~~Vr~a----~v~lPVL~KDFIid~~QI~eAr~~GADaVLL 267 (407)
.|.+....|.. -.+.+-|+|-..-|+| +++.++.+|+. +.++||.. |+.+.+..+.+...+|||.+.+
T Consensus 117 Tp~~~i~~~l~-~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~v-dGGI~~eni~~l~~aGAd~vVv 194 (220)
T PRK08883 117 TPLHHLEYIMD-KVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEI-DGGVKVDNIREIAEAGADMFVA 194 (220)
T ss_pred CCHHHHHHHHH-hCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEE-ECCCCHHHHHHHHHcCCCEEEE
Confidence 45555555554 3677888887777877 55677777753 12477766 8889999999999999999999
Q ss_pred eccCCCHHHHHHHHHHHH
Q 015424 268 IAAVLPDLDIRYMTKICK 285 (407)
Q Consensus 268 iaaiL~~~~L~~Li~~a~ 285 (407)
+.++...++.++.++..+
T Consensus 195 GSaIf~~~d~~~~i~~l~ 212 (220)
T PRK08883 195 GSAIFGQPDYKAVIDEMR 212 (220)
T ss_pred eHHHhCCCCHHHHHHHHH
Confidence 999885445544444433
No 426
>PRK07695 transcriptional regulator TenI; Provisional
Probab=93.07 E-value=0.71 Score=43.00 Aligned_cols=71 Identities=15% Similarity=0.202 Sum_probs=53.8
Q ss_pred HHHHHHHcCCcEEEE---E---ecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCCH
Q 015424 202 IARSYEKGGAACLSI---L---TDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPD 274 (407)
Q Consensus 202 iA~ay~~~GA~aISV---L---Td~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~ 274 (407)
.++.+.+.||+.|-. . |-+.+-..+++.++.+++. +++||+.-+.| ++..+.++...|||+|.++..+...
T Consensus 107 ~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~-~~ipvia~GGI-~~~~~~~~~~~Ga~gvav~s~i~~~ 183 (201)
T PRK07695 107 EAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARA-LSIPVIAIGGI-TPENTRDVLAAGVSGIAVMSGIFSS 183 (201)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHh-CCCCEEEEcCC-CHHHHHHHHHcCCCEEEEEHHHhcC
Confidence 467777889998842 1 1112223357888888875 78999988887 8999999999999999999988853
No 427
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=93.00 E-value=0.14 Score=48.37 Aligned_cols=131 Identities=16% Similarity=0.223 Sum_probs=79.2
Q ss_pred cccCCCcCCCCCCCCHHHHHH---HHHHcCCcEEEEEec-CCcCCCCHHHHHHHHhc----CCCCcEEeccc-------c
Q 015424 184 KKASPSRGILREDFDPVEIAR---SYEKGGAACLSILTD-EKYFKGSFENLEAVRSA----GVKCPLLCKEF-------I 248 (407)
Q Consensus 184 KraSPSkG~i~~~~dp~~iA~---ay~~~GA~aISVLTd-~~~F~Gs~edL~~Vr~a----~v~lPVL~KDF-------I 248 (407)
+.-|-+-|... +.|...+. -..-.||+.|-|--. -+-..-.++-++.+-.+ ..+.-|..-.+ -
T Consensus 53 ~~vSAT~GDvp--YKPGT~slAalGaav~GaDYiKVGLYg~kn~~eA~e~m~~vvrAVkd~d~~k~VVAaGYaDa~Rvgs 130 (235)
T COG1891 53 QEVSATVGDVP--YKPGTASLAALGAAVAGADYIKVGLYGTKNEEEALEVMKNVVRAVKDFDPSKKVVAAGYADAHRVGS 130 (235)
T ss_pred eeeeeeecCCC--CCCchHHHHHHHhHhhCCceEEEeecccccHHHHHHHHHHHHHHHhccCCCceEEeccccchhhccC
Confidence 33455556543 33433333 345668888888311 00000122333333222 11234554332 3
Q ss_pred CCHHHHHH-HHHcCCCEEEEeccCC---------CHHHHHHHHHHHHHcCCcE-EEEeCCHHHHHHHhcccCCcEEEeec
Q 015424 249 VDAWQIYY-ARTKGADAVLLIAAVL---------PDLDIRYMTKICKLLGLTA-LVEVHDEREMDRVLGIEGIELIGINN 317 (407)
Q Consensus 249 id~~QI~e-Ar~~GADaVLLiaaiL---------~~~~L~~Li~~a~~LGL~a-LVEVht~eElerAl~l~Ga~iIGINn 317 (407)
++|..+-+ |..+|||.+.+.+++- +.++|++|++.+|+.||++ |.---..+.+...-++ |++|||+..
T Consensus 131 v~Pl~~P~vaa~ag~DvaMvDTaiKDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlAGs~~~ehlp~l~ei-g~DivGvRg 209 (235)
T COG1891 131 VSPLLLPEVAAEAGADVAMVDTAIKDGKSLFDFMDEEELEEFVDLAHEHGLEVALAGSLKFEHLPILKEI-GPDIVGVRG 209 (235)
T ss_pred cCccccHHHHHhcCCCEEEEecccccchhHHhhhcHHHHHHHHHHHHHcchHHHhccccccccchHHHHh-CCCeeeecc
Confidence 56666555 7899999999998854 5678999999999999986 4444466777777777 999999953
No 428
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=92.97 E-value=4.3 Score=41.99 Aligned_cols=173 Identities=14% Similarity=0.123 Sum_probs=106.7
Q ss_pred HHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCC-cEEeccccCCHHHHHHHHHcCCCEEEEeccCCCHHHHH
Q 015424 200 VEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKC-PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIR 278 (407)
Q Consensus 200 ~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~l-PVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~ 278 (407)
.++|+.+.+.|+.++.|. +++....+|+++.+. .|+.- .-.++.++.++...+...+.+ -+.++++
T Consensus 67 ~~ia~~l~~~G~~g~~va--------s~~Ea~~lr~aGi~~~~I~~l-~~~~~~el~~~v~~~~~~i~V----~s~~~l~ 133 (382)
T cd06811 67 PFLARALLEAGIPGAVAV--------DFKEARALHEAGLPLGHVGHL-VQIPRHQVPAVLAMRPEVITV----YSLEKAR 133 (382)
T ss_pred HHHHHHHHHcCCCeEeEe--------cHHHHHHHHHcCCCHHhEEEc-cCCCHHHHHHHHHcCCCEEEE----CCHHHHH
Confidence 379999999999888886 588888888865443 23211 113577888888877443333 2567788
Q ss_pred HHHHHHHHcC--CcEEEEeCC--------------HHHHHHH----hcccCCcEEEeeccccccccccccc--cccccCc
Q 015424 279 YMTKICKLLG--LTALVEVHD--------------EREMDRV----LGIEGIELIGINNRNLAISIFSYRT--ETFEVDN 336 (407)
Q Consensus 279 ~Li~~a~~LG--L~aLVEVht--------------~eElerA----l~l~Ga~iIGINnRdL~~~~~~~t~--~Tf~vDl 336 (407)
.+.+.+++.| ..+++.|.+ .+|+..+ .++.+.++.|+.+- +...+.... ..+...+
T Consensus 134 ~L~~~A~~~g~~~~V~LrVdtg~~ri~~g~~~G~~~~e~~~~~~~i~~l~~l~l~Githf--~~~~~d~~~~~~~~~~~~ 211 (382)
T cd06811 134 EISDAAVELGRVQDVLLRVYGDEDTLYPGQEGGFPLEELPAVLAAIKALPGIRIAGLTSF--PCFLYDEEQGDIAPTPNL 211 (382)
T ss_pred HHHHHHHHcCCceEEEEEEECCCCccccCccceecHHHHHHHHHHHHcCCCcEEEeEccc--chhhcccCcccccHHHHH
Confidence 8888887766 346777652 3333332 33457788999542 111111110 0122234
Q ss_pred hhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015424 337 SNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 390 (407)
Q Consensus 337 ~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~ 390 (407)
++..++.+.++... ..+..+..||-.+...+..+.+.|++-+=.|.+|+-.
T Consensus 212 ~~l~~~~~~l~~~g---~~~~~is~Gga~ss~~l~~~~~~~~t~vRpG~~LyG~ 262 (382)
T cd06811 212 FTLLKAKELLEKRG---IEILQLNAPSATSCATLPLLAEYGVTHGEPGHALTGT 262 (382)
T ss_pred HHHHHHHHHHHHCC---CCCeEEccCCCcchhhHHHHHhCCCcEEeccEEEecC
Confidence 44444444332211 1356778888888888877788999999999999864
No 429
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=92.92 E-value=11 Score=37.45 Aligned_cols=162 Identities=16% Similarity=0.120 Sum_probs=93.4
Q ss_pred HHHHHHHHH-cCCcEEEEEe-cCCcCCCCHHHHH----HHHhc-CCCCcEEeccccCCHH----HHHHHHHcCCCEEEEe
Q 015424 200 VEIARSYEK-GGAACLSILT-DEKYFKGSFENLE----AVRSA-GVKCPLLCKEFIVDAW----QIYYARTKGADAVLLI 268 (407)
Q Consensus 200 ~~iA~ay~~-~GA~aISVLT-d~~~F~Gs~edL~----~Vr~a-~v~lPVL~KDFIid~~----QI~eAr~~GADaVLLi 268 (407)
.++.+.+.+ .|+.+|-|+. -..|+.=+.+.-. .+++. .-++||+..=.-.+.. +...|..+|||+|+++
T Consensus 27 ~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~ 106 (293)
T PRK04147 27 RRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAV 106 (293)
T ss_pred HHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 344566677 8999998872 1222222333222 22222 2358999753323333 3456789999999999
Q ss_pred ccCC---CHHH-HHHHHHHHHHcCCcEEEEe-----C---CHHHHHHHhcccCCcEEEeeccccccccccccccccccCc
Q 015424 269 AAVL---PDLD-IRYMTKICKLLGLTALVEV-----H---DEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDN 336 (407)
Q Consensus 269 aaiL---~~~~-L~~Li~~a~~LGL~aLVEV-----h---t~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl 336 (407)
.-.. ++++ ++++.+.+...++.+++== . +.+.+.+..+. ..++|| ++-..|+
T Consensus 107 ~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~~--pnvvgi--------------K~s~~d~ 170 (293)
T PRK04147 107 TPFYYPFSFEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNELFTL--PKVIGV--------------KQTAGDL 170 (293)
T ss_pred CCcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHhcC--CCEEEE--------------EeCCCCH
Confidence 8755 3344 4445555666677765541 1 45555555543 479999 4444577
Q ss_pred hhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEccccc
Q 015424 337 SNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIV 388 (407)
Q Consensus 337 ~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLm 388 (407)
..+.++.... .+..++ +|-. +.+.....+|++|++.|.+=+
T Consensus 171 ~~~~~~~~~~-------~~~~v~--~G~d--~~~~~~l~~G~~G~is~~~n~ 211 (293)
T PRK04147 171 YQLERIRKAF-------PDKLIY--NGFD--EMFASGLLAGADGAIGSTYNV 211 (293)
T ss_pred HHHHHHHHhC-------CCCEEE--Eeeh--HHHHHHHHcCCCEEEechhhh
Confidence 7777776431 233332 3432 334555679999999876543
No 430
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=92.89 E-value=0.24 Score=50.44 Aligned_cols=74 Identities=18% Similarity=0.172 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHcCCcEEEEEe---------------cCCcCCC------CHHHHHHHHhcCC--CCcEEeccccCCHHHH
Q 015424 198 DPVEIARSYEKGGAACLSILT---------------DEKYFKG------SFENLEAVRSAGV--KCPLLCKEFIVDAWQI 254 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLT---------------d~~~F~G------s~edL~~Vr~a~v--~lPVL~KDFIid~~QI 254 (407)
++.++|++++++||++|++.. ....+.| ++..+..+++. + ++||+.=..|.+..++
T Consensus 225 ~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~-~~~~ipiig~GGI~~~~da 303 (335)
T TIGR01036 225 DLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAE-LQGRLPIIGVGGISSAQDA 303 (335)
T ss_pred HHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHH-hCCCCCEEEECCCCCHHHH
Confidence 589999999999999998742 1111222 33555666654 4 6999998999999999
Q ss_pred HHHHHcCCCEEEEeccCC
Q 015424 255 YYARTKGADAVLLIAAVL 272 (407)
Q Consensus 255 ~eAr~~GADaVLLiaaiL 272 (407)
.+...+|||+|-+..+++
T Consensus 304 ~e~l~aGA~~Vqv~ta~~ 321 (335)
T TIGR01036 304 LEKIRAGASLLQIYSGFI 321 (335)
T ss_pred HHHHHcCCcHHHhhHHHH
Confidence 999999999999988865
No 431
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=92.87 E-value=8.8 Score=37.62 Aligned_cols=173 Identities=14% Similarity=0.118 Sum_probs=102.3
Q ss_pred HHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhc--CCCC-cEEeccccCCHHHHHHHHHcCCCEEEEeccCCCHHHH
Q 015424 201 EIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSA--GVKC-PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDI 277 (407)
Q Consensus 201 ~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a--~v~l-PVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L 277 (407)
.+++.+...|-+.+-|- -++-.-+++.+..+-.+ ...+ |++|=-. .|+..|..+..+||++|++ --+-+.++.
T Consensus 24 ~~~e~~a~~G~D~v~iD--~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~-~~~~~i~r~LD~Ga~gIiv-P~v~taeea 99 (249)
T TIGR03239 24 ITTEVLGLAGFDWLLLD--GEHAPNDVLTFIPQLMALKGSASAPVVRPPW-NEPVIIKRLLDIGFYNFLI-PFVESAEEA 99 (249)
T ss_pred HHHHHHHhcCCCEEEEe--cccCCCCHHHHHHHHHHHhhcCCCcEEECCC-CCHHHHHHHhcCCCCEEEe-cCcCCHHHH
Confidence 47788888999887764 44445577777665421 1334 4555332 6799999999999999965 455577788
Q ss_pred HHHHHHHHHc----------------------------CCcEEEEeCCHHH---HHHHhcccCCcEEEeecccccccccc
Q 015424 278 RYMTKICKLL----------------------------GLTALVEVHDERE---MDRVLGIEGIELIGINNRNLAISIFS 326 (407)
Q Consensus 278 ~~Li~~a~~L----------------------------GL~aLVEVht~eE---lerAl~l~Ga~iIGINnRdL~~~~~~ 326 (407)
+.+++.++-. ...+++-+-|.+- ++..+..+|.+.+.+-.-||..+...
T Consensus 100 ~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~~IEt~~av~n~~eI~av~gvd~l~iG~~DLs~slG~ 179 (249)
T TIGR03239 100 ERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQIESQKGVDNVDEIAAVDGVDGIFVGPSDLAAALGH 179 (249)
T ss_pred HHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccccEEEEEECCHHHHHhHHHHhCCCCCCEEEEChHHHHHHcCC
Confidence 8787544321 1123444444433 44445545788888877788554432
Q ss_pred ccccccccCchhHH-HHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcc
Q 015424 327 YRTETFEVDNSNTK-KLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGE 385 (407)
Q Consensus 327 ~t~~Tf~vDl~~t~-~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGe 385 (407)
+.....+.+.... +++...+ ..++.+ . --..++++++++.+.|++-+.+|.
T Consensus 180 -~~~~~~~~v~~a~~~v~~aa~-----a~G~~~-g-~~~~~~~~~~~~~~~G~~~~~~~~ 231 (249)
T TIGR03239 180 -LGNPNHPDVQKAIRHIFDRAA-----AHGKPC-G-ILAPVEADARRYLEWGATFVAVGS 231 (249)
T ss_pred -CCCCCCHHHHHHHHHHHHHHH-----HcCCCE-E-EcCCCHHHHHHHHHcCCCEEEEhH
Confidence 2222222222211 2222211 123332 1 123688999999999999999985
No 432
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=92.85 E-value=0.78 Score=44.39 Aligned_cols=97 Identities=15% Similarity=0.038 Sum_probs=57.6
Q ss_pred CceEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEEecCCcCCCC-----HHHHHHHHhcCC-CCcEEeccccC
Q 015424 176 LPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGS-----FENLEAVRSAGV-KCPLLCKEFIV 249 (407)
Q Consensus 176 ~~~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs-----~edL~~Vr~a~v-~lPVL~KDFIi 249 (407)
++..+.++...+|- +..+.+.+.. +.+-+++-.+-|++. .+.++.+|+. . +.||.. ||.+
T Consensus 129 Gl~~~~~v~p~T~~-----------e~l~~~~~~~-~~~l~msv~~~~g~~~~~~~~~~i~~lr~~-~~~~~i~v-~gGI 194 (244)
T PRK13125 129 GLKPVFFTSPKFPD-----------LLIHRLSKLS-PLFIYYGLRPATGVPLPVSVERNIKRVRNL-VGNKYLVV-GFGL 194 (244)
T ss_pred CCCEEEEECCCCCH-----------HHHHHHHHhC-CCEEEEEeCCCCCCCchHHHHHHHHHHHHh-cCCCCEEE-eCCc
Confidence 35677777665542 3334444332 223222322233443 3466677765 4 578765 5555
Q ss_pred -CHHHHHHHHHcCCCEEEEeccCCC---HHHHHHHHHHHHH
Q 015424 250 -DAWQIYYARTKGADAVLLIAAVLP---DLDIRYMTKICKL 286 (407)
Q Consensus 250 -d~~QI~eAr~~GADaVLLiaaiL~---~~~L~~Li~~a~~ 286 (407)
++.++.++..+|||+++.+.+++. ..+++++.+.+++
T Consensus 195 ~~~e~i~~~~~~gaD~vvvGSai~~~~~~~~~~~~~~~~~~ 235 (244)
T PRK13125 195 DSPEDARDALSAGADGVVVGTAFIEELEKNGVESALNLLKK 235 (244)
T ss_pred CCHHHHHHHHHcCCCEEEECHHHHHHHHhcCHHHHHHHHHH
Confidence 999999999999999999988763 2224445554443
No 433
>PLN02826 dihydroorotate dehydrogenase
Probab=92.76 E-value=0.87 Score=47.85 Aligned_cols=74 Identities=27% Similarity=0.180 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHcCCcEEEEEe------c-----C-----CcCCC------CHHHHHHHHhcCC--CCcEEeccccCCHHH
Q 015424 198 DPVEIARSYEKGGAACLSILT------D-----E-----KYFKG------SFENLEAVRSAGV--KCPLLCKEFIVDAWQ 253 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLT------d-----~-----~~F~G------s~edL~~Vr~a~v--~lPVL~KDFIid~~Q 253 (407)
++.++|+...+.|+++|.+.. + + +-+.| +.+.+..+++. + ++||+.-..|.+..+
T Consensus 277 di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~-~~~~ipIIgvGGI~sg~D 355 (409)
T PLN02826 277 DLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRL-TRGKIPLVGCGGVSSGED 355 (409)
T ss_pred HHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHH-hCCCCcEEEECCCCCHHH
Confidence 588899999999999998752 0 1 11222 45677777765 5 799999999999999
Q ss_pred HHHHHHcCCCEEEEeccCC
Q 015424 254 IYYARTKGADAVLLIAAVL 272 (407)
Q Consensus 254 I~eAr~~GADaVLLiaaiL 272 (407)
+++...+||++|-+..+++
T Consensus 356 a~e~i~AGAs~VQv~Ta~~ 374 (409)
T PLN02826 356 AYKKIRAGASLVQLYTAFA 374 (409)
T ss_pred HHHHHHhCCCeeeecHHHH
Confidence 9999999999999988755
No 434
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=92.75 E-value=0.65 Score=47.05 Aligned_cols=72 Identities=28% Similarity=0.346 Sum_probs=55.4
Q ss_pred HHHHHHHHHcCCcEEEEEecC--------------------CcC----CCCHHHHHHHHhcCC-CCcEEeccccCCHHHH
Q 015424 200 VEIARSYEKGGAACLSILTDE--------------------KYF----KGSFENLEAVRSAGV-KCPLLCKEFIVDAWQI 254 (407)
Q Consensus 200 ~~iA~ay~~~GA~aISVLTd~--------------------~~F----~Gs~edL~~Vr~a~v-~lPVL~KDFIid~~QI 254 (407)
.+.|+..++.|+++|-|-.-. .+| -...+.|..+++. + ++||+.-..|.+..++
T Consensus 192 ~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~-~~~ipIiasGGIr~~~dv 270 (326)
T cd02811 192 RETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSA-LPDLPLIASGGIRNGLDI 270 (326)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHH-cCCCcEEEECCCCCHHHH
Confidence 588999999999999974310 111 1124566677765 5 8999999999999999
Q ss_pred HHHHHcCCCEEEEeccCC
Q 015424 255 YYARTKGADAVLLIAAVL 272 (407)
Q Consensus 255 ~eAr~~GADaVLLiaaiL 272 (407)
..|..+|||+|-+...+|
T Consensus 271 ~kal~lGAd~V~i~~~~L 288 (326)
T cd02811 271 AKALALGADLVGMAGPFL 288 (326)
T ss_pred HHHHHhCCCEEEEcHHHH
Confidence 999999999999976544
No 435
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=92.75 E-value=1.4 Score=45.30 Aligned_cols=88 Identities=15% Similarity=0.138 Sum_probs=66.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhccccccc
Q 015424 272 LPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEII 351 (407)
Q Consensus 272 L~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i 351 (407)
++.+.-..|.++|++.||..+--.-+.+.++....+ ++...=|-.-++ .|+...+.+++
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~-~~~ayKIaS~E~-------------~~~plik~iA~------- 145 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESL-NPPAYKIASGEI-------------NDLPLIKYIAK------- 145 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhc-CCCeEEecCccc-------------cChHHHHHHHh-------
Confidence 345566778999999999999999999999999998 888877744433 34444555544
Q ss_pred ccCCceEEEeeCCCCHHHHHH----HHHcCCCEEE
Q 015424 352 RQKNIIVVGESGLFTPDDIAY----VQEAGVKAVL 382 (407)
Q Consensus 352 ~~~~v~vVAESGI~t~eD~~~----l~~~GadaVL 382 (407)
.+.++|...|+.+.++++. +++.|...++
T Consensus 146 --~~kPiIlSTGma~~~ei~~av~~~r~~g~~~i~ 178 (347)
T COG2089 146 --KGKPIILSTGMATIEEIEEAVAILRENGNPDIA 178 (347)
T ss_pred --cCCCEEEEcccccHHHHHHHHHHHHhcCCCCeE
Confidence 3458999999999998865 5567887433
No 436
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=92.61 E-value=0.96 Score=43.82 Aligned_cols=74 Identities=15% Similarity=0.079 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHcCCcEEEEEecCCcCCCC-------HHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEec
Q 015424 197 FDPVEIARSYEKGGAACLSILTDEKYFKGS-------FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA 269 (407)
Q Consensus 197 ~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs-------~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLia 269 (407)
..+.+..+.+.+.....|=++|-.+.|+|. .+.++.+|+. .++||+....|.++.++.++..+ ||+++++.
T Consensus 139 ~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~-~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGS 216 (242)
T cd04724 139 TTPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKY-TDLPIAVGFGISTPEQAAEVAKY-ADGVIVGS 216 (242)
T ss_pred CCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhc-CCCcEEEEccCCCHHHHHHHHcc-CCEEEECH
Confidence 344455555555334456566655566553 2667888886 79999997677778899999999 99999987
Q ss_pred cCC
Q 015424 270 AVL 272 (407)
Q Consensus 270 aiL 272 (407)
++.
T Consensus 217 aiv 219 (242)
T cd04724 217 ALV 219 (242)
T ss_pred HHH
Confidence 665
No 437
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=92.56 E-value=2.1 Score=41.00 Aligned_cols=114 Identities=18% Similarity=0.253 Sum_probs=72.6
Q ss_pred CCcEEeccccCCHHHHHHH-HHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEE---eCCHHHHHHHhcccCCcEEE
Q 015424 239 KCPLLCKEFIVDAWQIYYA-RTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVE---VHDEREMDRVLGIEGIELIG 314 (407)
Q Consensus 239 ~lPVL~KDFIid~~QI~eA-r~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVE---Vht~eElerAl~l~Ga~iIG 314 (407)
=+||++.+=.-+-.++.++ .+.|...+=+-. -++.-++.+-+..++++ +++|- |-|.++++.+.++ ||++|-
T Consensus 10 liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~--~t~~a~~~i~~l~~~~~-~~~vGAGTVl~~~~a~~a~~a-GA~Fiv 85 (204)
T TIGR01182 10 IVPVIRIDDVDDALPLAKALIEGGLRVLEVTL--RTPVALDAIRLLRKEVP-DALIGAGTVLNPEQLRQAVDA-GAQFIV 85 (204)
T ss_pred EEEEEecCCHHHHHHHHHHHHHcCCCEEEEeC--CCccHHHHHHHHHHHCC-CCEEEEEeCCCHHHHHHHHHc-CCCEEE
Confidence 3788887743444456665 567888765543 34444554555555665 56554 4589999999997 999873
Q ss_pred eeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEE
Q 015424 315 INNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLV 383 (407)
Q Consensus 315 INnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLV 383 (407)
.-+ .|.+......+ .+++.+- |+.||.++..+.++|++.|=+
T Consensus 86 sP~----------------~~~~v~~~~~~---------~~i~~iP--G~~TptEi~~A~~~Ga~~vKl 127 (204)
T TIGR01182 86 SPG----------------LTPELAKHAQD---------HGIPIIP--GVATPSEIMLALELGITALKL 127 (204)
T ss_pred CCC----------------CCHHHHHHHHH---------cCCcEEC--CCCCHHHHHHHHHCCCCEEEE
Confidence 311 12222222211 3444444 999999999999999998743
No 438
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=92.54 E-value=3.5 Score=40.85 Aligned_cols=117 Identities=22% Similarity=0.146 Sum_probs=76.7
Q ss_pred HHHHHHhhhhcCCCceEEEEecccCCCcCCCCCCCCHHHHHHHH-HHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCc
Q 015424 163 FIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSY-EKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCP 241 (407)
Q Consensus 163 f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~ay-~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lP 241 (407)
+.+.++-.+.-.....|.+.|+...-+. + .+.+..+.++.. +.++|++|-|--...--.=++++|+.+|+. +++|
T Consensus 127 a~e~~r~R~~l~a~v~ilaDV~~kh~~~--l-~~~~~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~-~~~P 202 (254)
T PF03437_consen 127 AGELLRYRKRLGADVKILADVHVKHSSP--L-ATRDLEEAAKDAVERGGADAVIVTGKATGEPPDPEKLKRVREA-VPVP 202 (254)
T ss_pred HHHHHHHHHHcCCCeEEEeeechhhccc--C-CCCCHHHHHHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHhc-CCCC
Confidence 4445544332123378999987664322 1 133677777666 788999998843222222378999999986 7899
Q ss_pred EEeccccCCHHHHHHHHHcCCCEEEEeccCC---------CHHHHHHHHHHHH
Q 015424 242 LLCKEFIVDAWQIYYARTKGADAVLLIAAVL---------PDLDIRYMTKICK 285 (407)
Q Consensus 242 VL~KDFIid~~QI~eAr~~GADaVLLiaaiL---------~~~~L~~Li~~a~ 285 (407)
||..-. +++..|.+.... ||+++..+.+- +.+..++|++.++
T Consensus 203 VlvGSG-vt~~Ni~~~l~~-ADG~IVGS~~K~~G~~~n~VD~~Rv~~fm~~v~ 253 (254)
T PF03437_consen 203 VLVGSG-VTPENIAEYLSY-ADGAIVGSYFKKDGKWENPVDPERVRRFMEAVK 253 (254)
T ss_pred EEEecC-CCHHHHHHHHHh-CCEEEEeeeeeeCCEeCCcCCHHHHHHHHHHhh
Confidence 998876 777788776543 99999988754 3455666666543
No 439
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=92.50 E-value=0.38 Score=51.52 Aligned_cols=110 Identities=21% Similarity=0.179 Sum_probs=75.8
Q ss_pred CCCHHHHHHHHHHHHHcC-Cc-E---EEEeCCHHHHHH-HhcccCCcEEEeeccccccccccccccccccC--------c
Q 015424 271 VLPDLDIRYMTKICKLLG-LT-A---LVEVHDEREMDR-VLGIEGIELIGINNRNLAISIFSYRTETFEVD--------N 336 (407)
Q Consensus 271 iL~~~~L~~Li~~a~~LG-L~-a---LVEVht~eEler-Al~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vD--------l 336 (407)
+.+.+||..|+...+++. .. + ||-.|..+.+.. +.++ +||+|-|..-+= |+|-++.++--. +
T Consensus 284 iysieDLaqlI~dLk~~~~~~~I~VKlva~~~v~~iaagvakA-~AD~I~IdG~~G---GTGAsP~~~~~~~GiP~e~gl 359 (485)
T COG0069 284 IYSIEDLAQLIKDLKEANPWAKISVKLVAEHGVGTIAAGVAKA-GADVITIDGADG---GTGASPLTSIDHAGIPWELGL 359 (485)
T ss_pred ccCHHHHHHHHHHHHhcCCCCeEEEEEecccchHHHHhhhhhc-cCCEEEEcCCCC---cCCCCcHhHhhcCCchHHHHH
Confidence 668889999999888873 11 2 566677777666 6776 999999965543 555555544311 1
Q ss_pred hhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEccccc
Q 015424 337 SNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIV 388 (407)
Q Consensus 337 ~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLm 388 (407)
..+.+.+.. ..++ +.+.+++.||+.|..|+.+...+|||.|-+|++-|
T Consensus 360 ae~~q~L~~---~glR-d~v~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~l 407 (485)
T COG0069 360 AETHQTLVL---NGLR-DKVKLIADGGLRTGADVAKAAALGADAVGFGTAAL 407 (485)
T ss_pred HHHHHHHHH---cCCc-ceeEEEecCCccCHHHHHHHHHhCcchhhhchHHH
Confidence 112222211 1232 56899999999999999999999999999998754
No 440
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=92.44 E-value=1.2 Score=46.04 Aligned_cols=91 Identities=21% Similarity=0.316 Sum_probs=71.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhccccccc
Q 015424 272 LPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEII 351 (407)
Q Consensus 272 L~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i 351 (407)
+..+.|+.|.+.++++||.++.|+++.++++.+.+. ++++=|-.||. .. +.....+.+
T Consensus 149 ~g~~gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~~--~d~lqIga~~~---------~n----~~LL~~va~------- 206 (352)
T PRK13396 149 HGESALELLAAAREATGLGIITEVMDAADLEKIAEV--ADVIQVGARNM---------QN----FSLLKKVGA------- 206 (352)
T ss_pred chHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHhh--CCeEEECcccc---------cC----HHHHHHHHc-------
Confidence 456678889999999999999999999999999885 79999988888 43 333333332
Q ss_pred ccCCceEEEeeCCC-CHHHHHH----HHHcCCCEEEEccc
Q 015424 352 RQKNIIVVGESGLF-TPDDIAY----VQEAGVKAVLVGES 386 (407)
Q Consensus 352 ~~~~v~vVAESGI~-t~eD~~~----l~~~GadaVLVGea 386 (407)
.+.+|+..-|.. |++|+.. +.+.|-+-|++-+.
T Consensus 207 --t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~er 244 (352)
T PRK13396 207 --QDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCER 244 (352)
T ss_pred --cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEec
Confidence 467899999999 9998754 55568877777765
No 441
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=92.43 E-value=0.25 Score=48.83 Aligned_cols=43 Identities=14% Similarity=0.259 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCCCcEEeccccCC-HHHHHHHHHcCCCEEEEeccCC
Q 015424 228 ENLEAVRSAGVKCPLLCKEFIVD-AWQIYYARTKGADAVLLIAAVL 272 (407)
Q Consensus 228 edL~~Vr~a~v~lPVL~KDFIid-~~QI~eAr~~GADaVLLiaaiL 272 (407)
+.++.+|+. +++||.. ||.|. +.|+.+...+|||+|+.+.+++
T Consensus 192 ~~i~~ir~~-t~~Pi~v-GFGI~~~e~~~~~~~~GADGvVVGSalv 235 (263)
T CHL00200 192 KLIETIKKM-TNKPIIL-GFGISTSEQIKQIKGWNINGIVIGSACV 235 (263)
T ss_pred HHHHHHHHh-cCCCEEE-ECCcCCHHHHHHHHhcCCCEEEECHHHH
Confidence 456777875 8999998 66555 9999999999999999998874
No 442
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=92.36 E-value=0.82 Score=44.96 Aligned_cols=91 Identities=23% Similarity=0.323 Sum_probs=62.7
Q ss_pred CHHHH-HHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHH
Q 015424 297 DEREM-DRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQE 375 (407)
Q Consensus 297 t~eEl-erAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~ 375 (407)
|+.|. ....+ +||+.+=+. ||-+.- ..-..+.+...++++. .++.+=..|||+|.++++++.+
T Consensus 32 ~P~~~a~~~~~-~Ga~~lHlV--DLdgA~-----~g~~~n~~~i~~i~~~--------~~~~vQvGGGIRs~~~v~~ll~ 95 (241)
T COG0106 32 DPLEVAKKWSD-QGAEWLHLV--DLDGAK-----AGGPRNLEAIKEILEA--------TDVPVQVGGGIRSLEDVEALLD 95 (241)
T ss_pred CHHHHHHHHHH-cCCcEEEEe--eccccc-----cCCcccHHHHHHHHHh--------CCCCEEeeCCcCCHHHHHHHHH
Confidence 44443 33334 477776663 551100 0112455566677664 3456777999999999999999
Q ss_pred cCCCEEEEcccccCCCChHHHHHhhhcC
Q 015424 376 AGVKAVLVGESIVKQDDPGKGITGLFGK 403 (407)
Q Consensus 376 ~GadaVLVGeaLmk~~dp~~~i~~L~~~ 403 (407)
+|++.|++|+.-++.++..+.+.+.++.
T Consensus 96 ~G~~rViiGt~av~~p~~v~~~~~~~g~ 123 (241)
T COG0106 96 AGVARVIIGTAAVKNPDLVKELCEEYGD 123 (241)
T ss_pred CCCCEEEEecceecCHHHHHHHHHHcCC
Confidence 9999999999999998887777777763
No 443
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=92.34 E-value=2.6 Score=42.18 Aligned_cols=139 Identities=16% Similarity=0.199 Sum_probs=91.0
Q ss_pred CCCccHHHHHHhhhhcCCCceEEEEecccCCCcCCCCCCCCHHHHHH-HHHHcCCc----E----EEEEecCCcCCCCHH
Q 015424 158 PPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIAR-SYEKGGAA----C----LSILTDEKYFKGSFE 228 (407)
Q Consensus 158 ~~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~-ay~~~GA~----a----ISVLTd~~~F~Gs~e 228 (407)
..++.|.++++.. +....|+.=.|..|--. .+.+ +..-||+. . |-|-..--.|.|-.+
T Consensus 105 T~T~~~v~~~~~~----~~~~~i~~TRKt~Pg~R---------~l~k~Av~~GGg~~HR~gLsd~vLikdnHi~~~~i~~ 171 (278)
T PRK08385 105 TETRKLVELVKAV----NPKVRVAGTRKTLPGLR---------LLDKKAIIIGGGEPHRFSLSDAILIKDNHLALVPLEE 171 (278)
T ss_pred HHHHHHHHHHHhc----CCCEEEEEeCCCChhhh---------HHHHHHHHhcCCcccCCCCcccEEEccCHHHHHHHHH
Confidence 3467888888753 33467887777777422 1222 22345554 2 212111112223335
Q ss_pred HHHHHHhcCCCCcEE--eccccCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcC--CcEEEEeC---CHHHH
Q 015424 229 NLEAVRSAGVKCPLL--CKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLG--LTALVEVH---DEREM 301 (407)
Q Consensus 229 dL~~Vr~a~v~lPVL--~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LG--L~aLVEVh---t~eEl 301 (407)
.+..+|+.....+|. +. +..|+.+|..+|||.|+|.- ++++++++.++..++.| -.+.+|++ |.+.+
T Consensus 172 av~~~r~~~~~~kIeVEv~----~leea~~a~~agaDiI~LDn--~~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni 245 (278)
T PRK08385 172 AIRRAKEFSVYKVVEVEVE----SLEDALKAAKAGADIIMLDN--MTPEEIREVIEALKREGLRERVKIEVSGGITPENI 245 (278)
T ss_pred HHHHHHHhCCCCcEEEEeC----CHHHHHHHHHcCcCEEEECC--CCHHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHH
Confidence 566666532233433 33 57899999999999999865 47889999999888876 46899998 88999
Q ss_pred HHHhcccCCcEEEee
Q 015424 302 DRVLGIEGIELIGIN 316 (407)
Q Consensus 302 erAl~l~Ga~iIGIN 316 (407)
....+. |+|+|++.
T Consensus 246 ~~yA~t-GvD~Is~g 259 (278)
T PRK08385 246 EEYAKL-DVDVISLG 259 (278)
T ss_pred HHHHHc-CCCEEEeC
Confidence 888886 99999984
No 444
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=92.31 E-value=13 Score=37.14 Aligned_cols=165 Identities=17% Similarity=0.182 Sum_probs=105.3
Q ss_pred CHHHHHHHHHHcCCc----EEEE-------EecCCcCCC-----CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcC
Q 015424 198 DPVEIARSYEKGGAA----CLSI-------LTDEKYFKG-----SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG 261 (407)
Q Consensus 198 dp~~iA~ay~~~GA~----aISV-------LTd~~~F~G-----s~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~G 261 (407)
-..++|+.+.+.|+. .+-= -|-+..|+| .++.|+.+++. ..+||+. | |-++.|+..+..+
T Consensus 25 ~~~~~A~~lk~~~~~~~~~~~fK~sf~KapRTSp~sFqG~G~eeGL~~L~~vk~~-~GlpvvT-e-V~~~~~~~~v~~~- 100 (264)
T PRK05198 25 LALRIAEHLKEITDKLGIPYVFKASFDKANRSSIHSFRGPGLEEGLKILQEVKET-FGVPVLT-D-VHEPEQAAPVAEV- 100 (264)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEeccccCCCCCCCCCCCCCChHHHHHHHHHHHHH-HCCceEE-E-eCCHHHHHHHHhh-
Confidence 356677877775543 2222 467778887 56788889886 8999997 3 4789999999888
Q ss_pred CCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHHH----HhcccCCcEEEeecccccccccccccccccc
Q 015424 262 ADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDR----VLGIEGIELIGINNRNLAISIFSYRTETFEV 334 (407)
Q Consensus 262 ADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVh---t~eEler----Al~l~Ga~iIGINnRdL~~~~~~~t~~Tf~v 334 (407)
+|.+-+.+....+-+ |++.+-+.|.-+++-=. +.+|... +... |..-|-..-|.. .|+| +.+.+
T Consensus 101 ~DilQIgArn~rn~~---LL~a~g~t~kpV~lKrG~~~t~~e~~~aaeyi~~~-Gn~~vilcERG~---tf~y--~r~~~ 171 (264)
T PRK05198 101 VDVLQIPAFLCRQTD---LLVAAAKTGKVVNIKKGQFLAPWDMKNVVDKVREA-GNDKIILCERGT---SFGY--NNLVV 171 (264)
T ss_pred CcEEEECchhcchHH---HHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHc-CCCeEEEEeCCC---CcCC--CCeee
Confidence 999988887665544 45555555766666433 6666644 4443 666666667754 3344 45667
Q ss_pred CchhHHHHhhcccccccccCCceEEEe---------------eCCCC--HHHHHHHHHcCCCEEEEc
Q 015424 335 DNSNTKKLLEGERGEIIRQKNIIVVGE---------------SGLFT--PDDIAYVQEAGVKAVLVG 384 (407)
Q Consensus 335 Dl~~t~~L~~~~~~~~i~~~~v~vVAE---------------SGI~t--~eD~~~l~~~GadaVLVG 384 (407)
|+...-.+.+. +.+||.- +|-+. +.-++....+|+||++|-
T Consensus 172 D~~~vp~~k~~---------~lPVi~DpSHsvq~pg~~~~~s~G~r~~v~~la~AAvA~GadGl~iE 229 (264)
T PRK05198 172 DMRGLPIMRET---------GAPVIFDATHSVQLPGGQGGSSGGQREFVPVLARAAVAVGVAGLFIE 229 (264)
T ss_pred chhhhHHHhhC---------CCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHcCCCEEEEE
Confidence 87665444321 2344331 33322 223345667899999986
No 445
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=92.31 E-value=1.7 Score=45.08 Aligned_cols=190 Identities=23% Similarity=0.202 Sum_probs=117.8
Q ss_pred CCCHHHHHHHHHHcCCcEEEEEecCCcCCCCHH---HHHHHHhc--CCCCcEEeccccCCH----------HHHH-HHHH
Q 015424 196 DFDPVEIARSYEKGGAACLSILTDEKYFKGSFE---NLEAVRSA--GVKCPLLCKEFIVDA----------WQIY-YART 259 (407)
Q Consensus 196 ~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~e---dL~~Vr~a--~v~lPVL~KDFIid~----------~QI~-eAr~ 259 (407)
--.|+++|+.|-+-||+-++.|.-..|-.+-+. .|+.+|++ .|-+|+-....|.|- .++. +.-.
T Consensus 268 LGKPV~Laq~Yyq~GADEv~FLNITsFRdcPl~D~PMlqVL~qaaktVFVPLTVGGGIrD~~D~dGt~~palEVA~~YFR 347 (541)
T KOG0623|consen 268 LGKPVDLAQQYYQDGADEVSFLNITSFRDCPLGDLPMLQVLRQAAKTVFVPLTVGGGIRDFTDADGTYYPALEVAAEYFR 347 (541)
T ss_pred cCChHHHHHHHHhcCCceeEEEeeccccCCCcccChHHHHHHHhhceEEEEEeecCcccccccCCCcCchhHHHHHHHHh
Confidence 447999999999999999999977766665444 44555543 256787755444332 2332 3457
Q ss_pred cCCCEEEEeccCCCHHHHHHHHH-------------HHHHcCCcE-----------------------------------
Q 015424 260 KGADAVLLIAAVLPDLDIRYMTK-------------ICKLLGLTA----------------------------------- 291 (407)
Q Consensus 260 ~GADaVLLiaaiL~~~~L~~Li~-------------~a~~LGL~a----------------------------------- 291 (407)
.|||-|-+........+ .+++ +.+.+|-++
T Consensus 348 SGADKvSIGsDAVyAAE--kyye~G~k~~Gks~iEtISkaYGnQAVViSvDPkRvYVn~p~Dtk~kV~~t~~pGPNGE~Y 425 (541)
T KOG0623|consen 348 SGADKVSIGSDAVYAAE--KYYESGVKGTGKSSIETISKAYGNQAVVISVDPKRVYVNHPDDTKYKVIRTTNPGPNGEEY 425 (541)
T ss_pred cCCceeeechhHHHHHH--HHHHhccCCCCcChHHHHHHHhCCeeEEEEeCCceeeecCCccCcceEEEecCCCCCCcee
Confidence 89999998876553321 1222 223344443
Q ss_pred -EEEeC----------CHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEE
Q 015424 292 -LVEVH----------DEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVG 360 (407)
Q Consensus 292 -LVEVh----------t~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVA 360 (407)
|-.|. ..-|+.+|.+.-||--|-.|--|--++.. ..|++.. +|++. .-+++||+
T Consensus 426 cWYQCTvkGGRE~Rdigv~ELtrAcEalGAGEiLLNCiD~DGsn~-------GyDieLv-~lvkd-------sV~IPVIA 490 (541)
T KOG0623|consen 426 CWYQCTVKGGREGRDIGVFELTRACEALGAGEILLNCIDCDGSNK-------GYDIELV-KLVKD-------SVGIPVIA 490 (541)
T ss_pred EEEEEEEcCCcccCccchhhHHHHHHHhCcchheeeeeccCCCCC-------CcchhHH-HHhhc-------ccCCceEe
Confidence 22221 22356555543365544444444322222 2355443 34332 13689999
Q ss_pred eeCCCCHHHHHHHH-HcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 361 ESGLFTPDDIAYVQ-EAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 361 ESGI~t~eD~~~l~-~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
.||-.+|++...+. +..|||.|-.--+-+..-|.+.+++-+.
T Consensus 491 SSGAG~P~HFeEvF~kT~adAaLaAGiFHR~e~~i~dVKEyL~ 533 (541)
T KOG0623|consen 491 SSGAGTPDHFEEVFEKTNADAALAAGIFHRKEVPIQDVKEYLQ 533 (541)
T ss_pred cCCCCCcHHHHHHHHhcCchhhhhccceecCccchHHHHHHHH
Confidence 99999999998775 5689998888888888888888888765
No 446
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=92.25 E-value=13 Score=36.68 Aligned_cols=182 Identities=18% Similarity=0.197 Sum_probs=121.7
Q ss_pred CCCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCC---
Q 015424 196 DFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL--- 272 (407)
Q Consensus 196 ~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL--- 272 (407)
.-||++.|...+++||..|-|---+.--.=..+|+..+|+. ++.|+= =+.-.++..+.-|...--|.|.|.-.-.
T Consensus 20 ~Pdpv~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~-~~~~lN-lE~a~t~em~~ia~~~kP~~vtLVPEkr~E~ 97 (234)
T cd00003 20 YPDPVEAALLAEKAGADGITVHLREDRRHIQDRDVRLLREL-VRTELN-LEMAPTEEMLEIALEVKPHQVTLVPEKREEL 97 (234)
T ss_pred CCCHHHHHHHHHHcCCCEEEecCCCCcCcCCHHHHHHHHHH-cCCCEE-eccCCCHHHHHHHHHCCCCEEEECCCCCCCc
Confidence 34999999999999999999864444344467899999986 665542 2223566778889999999999965422
Q ss_pred ----------CHHHHHHHHHHHHHcCCcEEEEe-CCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHH
Q 015424 273 ----------PDLDIRYMTKICKLLGLTALVEV-HDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKK 341 (407)
Q Consensus 273 ----------~~~~L~~Li~~a~~LGL~aLVEV-ht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~ 341 (407)
..+.|+..++..+..|+.+=+=+ -+.+.++.|.++ ||+.|=+..=.|+.. +......-.++....
T Consensus 98 TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDPd~~qi~~A~~~-GAd~VELhTG~Ya~a---~~~~~~~~el~~i~~ 173 (234)
T cd00003 98 TTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDPDPEQIEAAKEV-GADRVELHTGPYANA---YDKAEREAELERIAK 173 (234)
T ss_pred cCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHh-CcCEEEEechhhhcC---CCchhHHHHHHHHHH
Confidence 23567888888888999874444 489999999998 999998854444110 000000001111111
Q ss_pred HhhcccccccccCCceEEEeeCCCCHHHHHHHHHc-CCCEEEEcccccC
Q 015424 342 LLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEA-GVKAVLVGESIVK 389 (407)
Q Consensus 342 L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~-GadaVLVGeaLmk 389 (407)
.+.. ...-+..|-|.-|+ +.+.+..+... +..-+=||.+|+.
T Consensus 174 aa~~-----a~~~GL~VnAGHgL-ny~Nv~~i~~ip~i~ElnIGHsiia 216 (234)
T cd00003 174 AAKL-----ARELGLGVNAGHGL-NYENVKPIAKIPGIAELNIGHAIIS 216 (234)
T ss_pred HHHH-----HHHcCCEEecCCCC-CHHHHHHHHhCCCCeEEccCHHHHH
Confidence 1111 11236777788888 88888887654 7888889988874
No 447
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=92.24 E-value=0.91 Score=45.23 Aligned_cols=45 Identities=20% Similarity=0.242 Sum_probs=38.7
Q ss_pred HHHHHHHHhcCC--CCcEEeccccCCHHHHHHHHHcCCCEEEEeccCC
Q 015424 227 FENLEAVRSAGV--KCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (407)
Q Consensus 227 ~edL~~Vr~a~v--~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (407)
+..+..+++. + ++||+.-..|.+..++.+...+|||+|-+..+++
T Consensus 230 l~~v~~~~~~-~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~ 276 (294)
T cd04741 230 LGNVRTFRRL-LPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALG 276 (294)
T ss_pred HHHHHHHHHh-cCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhh
Confidence 3556777775 6 5999999999999999999999999999998877
No 448
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=92.19 E-value=1.2 Score=44.53 Aligned_cols=138 Identities=16% Similarity=0.162 Sum_probs=86.6
Q ss_pred CCCccHHHHHHhhhhcCCCceEEEEecccCCCcCCCCCCCCHHHHHH-HHHHcCCcE----E--EEEecCC---cCCCC-
Q 015424 158 PPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIAR-SYEKGGAAC----L--SILTDEK---YFKGS- 226 (407)
Q Consensus 158 ~~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~-ay~~~GA~a----I--SVLTd~~---~F~Gs- 226 (407)
..++.|..+++. ....|+-=.|..|--. .+++ +..-||+.- + +|+-.++ +| |+
T Consensus 105 T~t~~~v~~~~~------~~~~i~~TRKt~Pg~r---------~~~k~Av~~GGg~~HR~gL~d~vlikdnHi~~~-g~i 168 (273)
T PRK05848 105 TLTSRYVEALES------HKVKLLDTRKTRPLLR---------IFEKYSVRNGGASNHRLGLDDCLMLKDTHLKHI-KDL 168 (273)
T ss_pred HHHHHHHHHhcC------CCeEEEecCCCCcchh---------HHHHHHHHhCCCccccCCchhhhCcCHHHHHHH-CcH
Confidence 345678777753 2356777777777421 1222 223455531 1 2333333 34 44
Q ss_pred HHHHHHHHhcCC-CCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHH
Q 015424 227 FENLEAVRSAGV-KCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMD 302 (407)
Q Consensus 227 ~edL~~Vr~a~v-~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVh---t~eEle 302 (407)
.+-++.+|+... ..+|.. + +-+..|..+|..+|||.|+|.- .+.+++++.++..+...-.+.+|++ |++.+.
T Consensus 169 ~~~v~~~k~~~p~~~~I~V-E-v~tleea~~A~~~GaDiI~LDn--~~~e~l~~~v~~~~~~~~~~~ieAsGgIt~~ni~ 244 (273)
T PRK05848 169 KEFIQHARKNIPFTAKIEI-E-CESLEEAKNAMNAGADIVMCDN--MSVEEIKEVVAYRNANYPHVLLEASGNITLENIN 244 (273)
T ss_pred HHHHHHHHHhCCCCceEEE-E-eCCHHHHHHHHHcCCCEEEECC--CCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHH
Confidence 455777776411 133332 2 3457899999999999999854 5777888888865543445677776 899999
Q ss_pred HHhcccCCcEEEee
Q 015424 303 RVLGIEGIELIGIN 316 (407)
Q Consensus 303 rAl~l~Ga~iIGIN 316 (407)
...++ |+++|.+.
T Consensus 245 ~ya~~-GvD~IsvG 257 (273)
T PRK05848 245 AYAKS-GVDAISSG 257 (273)
T ss_pred HHHHc-CCCEEEeC
Confidence 99997 99999984
No 449
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=92.17 E-value=6.2 Score=35.19 Aligned_cols=135 Identities=21% Similarity=0.197 Sum_probs=84.7
Q ss_pred cHHHHHHhhhhcCCCceEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCC-cEEEEEecCCcCCCCHHHHHHHHhcCCCC
Q 015424 162 DFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGA-ACLSILTDEKYFKGSFENLEAVRSAGVKC 240 (407)
Q Consensus 162 ~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA-~aISVLTd~~~F~Gs~edL~~Vr~a~v~l 240 (407)
.|.+.|.... ++..+..|+|-.++. ......+...+.+.|. ..+-+- ..+.+.+..+|+....+
T Consensus 50 tL~e~l~~~~---~~~~i~leiK~~~~~------~~~~~~l~~~i~~~~~~~~v~i~------s~~~~~l~~~~~~~p~~ 114 (189)
T cd08556 50 TLEEVLELVK---GGVGLNIELKEPTRY------PGLEAKVAELLREYGLEERVVVS------SFDHEALRALKELDPEV 114 (189)
T ss_pred CHHHHHHhcc---cCcEEEEEECCCCCc------hhHHHHHHHHHHHcCCcCCEEEE------eCCHHHHHHHHHhCCCC
Confidence 4555555442 246799999997652 1234456677777763 323322 24678899998753455
Q ss_pred cEE--eccccCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEE-eCCHHHHHHHhcccCCcEEEee
Q 015424 241 PLL--CKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVE-VHDEREMDRVLGIEGIELIGIN 316 (407)
Q Consensus 241 PVL--~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVE-Vht~eElerAl~l~Ga~iIGIN 316 (407)
|+. ..............+..|++.+-+....+++ .+++.+++.|+.+++= |++.++++.+... |++.|-.+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~i~~~~~~g~~v~~wtvn~~~~~~~~~~~-GVdgI~TD 188 (189)
T cd08556 115 PTGLLVDKPPLDPLLAELARALGADAVNPHYKLLTP----ELVRAAHAAGLKVYVWTVNDPEDARRLLAL-GVDGIITD 188 (189)
T ss_pred cEEEEeecCcccchhhhHHHhcCCeEEccChhhCCH----HHHHHHHHcCCEEEEEcCCCHHHHHHHHHC-CCCEEecC
Confidence 653 2221111111124677899988887665553 4678889999998554 5679999999997 88877553
No 450
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=92.06 E-value=0.99 Score=42.34 Aligned_cols=123 Identities=20% Similarity=0.256 Sum_probs=72.2
Q ss_pred HHHHHhcCCCCcEEe----ccccCCHHHHHHHHHcC-CCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEe--CCHHHHH
Q 015424 230 LEAVRSAGVKCPLLC----KEFIVDAWQIYYARTKG-ADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEV--HDEREMD 302 (407)
Q Consensus 230 L~~Vr~a~v~lPVL~----KDFIid~~QI~eAr~~G-ADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEV--ht~eEle 302 (407)
+..++++ -...++. +++-.|++-+..-+..+ +|+|+=- . ..++++|+++||-++-=+ -|-.-++
T Consensus 37 v~~~~~~-gK~vfVHiDli~Gl~~D~~~i~~L~~~~~~dGIIST-----k---~~~i~~Ak~~gl~tIqRiFliDS~al~ 107 (175)
T PF04309_consen 37 VKRLKAA-GKKVFVHIDLIEGLSRDEAGIEYLKEYGKPDGIIST-----K---SNLIKRAKKLGLLTIQRIFLIDSSALE 107 (175)
T ss_dssp HHHHHHT-T-EEEEECCGEETB-SSHHHHHHHHHTT--SEEEES-----S---HHHHHHHHHTT-EEEEEEE-SSHHHHH
T ss_pred HHHHHHc-CCEEEEEehhcCCCCCCHHHHHHHHHcCCCcEEEeC-----C---HHHHHHHHHcCCEEEEEeeeecHHHHH
Confidence 3444554 3444554 44568999887766665 9997652 2 347899999999984332 2444444
Q ss_pred HHhcc---cCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCC
Q 015424 303 RVLGI---EGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVK 379 (407)
Q Consensus 303 rAl~l---~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~Gad 379 (407)
+.++. ..+|.|=|-.- ..-++++.++. ..++++||.|=|.+.||+..+.++||.
T Consensus 108 ~~~~~i~~~~PD~vEilPg-------------------~~p~vi~~i~~----~~~~PiIAGGLI~~~e~v~~al~aGa~ 164 (175)
T PF04309_consen 108 TGIKQIEQSKPDAVEILPG-------------------VMPKVIKKIRE----ETNIPIIAGGLIRTKEDVEEALKAGAD 164 (175)
T ss_dssp HHHHHHHHHT-SEEEEESC-------------------CHHHHHCCCCC----CCSS-EEEESS--SHHHHHHHCCTTCE
T ss_pred HHHHHHhhcCCCEEEEchH-------------------HHHHHHHHHHH----hcCCCEEeecccCCHHHHHHHHHcCCE
Confidence 44332 35666655221 12344444322 135789999999999999999999999
Q ss_pred EEEEc
Q 015424 380 AVLVG 384 (407)
Q Consensus 380 aVLVG 384 (407)
||-..
T Consensus 165 aVSTS 169 (175)
T PF04309_consen 165 AVSTS 169 (175)
T ss_dssp EEEE-
T ss_pred EEEcC
Confidence 98654
No 451
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=92.05 E-value=0.29 Score=50.06 Aligned_cols=94 Identities=30% Similarity=0.334 Sum_probs=69.8
Q ss_pred CCccHHHHHHhhhhcCCCceEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEEec-CCcCCC----C---HHHH
Q 015424 159 PARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTD-EKYFKG----S---FENL 230 (407)
Q Consensus 159 ~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVLTd-~~~F~G----s---~edL 230 (407)
++.+|.+.++.. | ..|+.-+ .-...|+.+++.|+++|-+.-- -+--.| + +.-+
T Consensus 115 ~~~~~i~~~~~~----g-~~v~~~v--------------~~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv 175 (336)
T COG2070 115 PPAEFVARLKAA----G-IKVIHSV--------------ITVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALV 175 (336)
T ss_pred CcHHHHHHHHHc----C-CeEEEEe--------------CCHHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHH
Confidence 577888888763 2 2344333 2346899999999999887632 222222 2 4556
Q ss_pred HHHHhcCCC-CcEEeccccCCHHHHHHHHHcCCCEEEEeccCC
Q 015424 231 EAVRSAGVK-CPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (407)
Q Consensus 231 ~~Vr~a~v~-lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (407)
.+|++. ++ +||+.=..|-|..+|..|..+|||+|-++++.+
T Consensus 176 ~ev~~~-~~~iPViAAGGI~dg~~i~AAlalGA~gVq~GT~Fl 217 (336)
T COG2070 176 PEVVDA-VDGIPVIAAGGIADGRGIAAALALGADGVQMGTRFL 217 (336)
T ss_pred HHHHHH-hcCCCEEEecCccChHHHHHHHHhccHHHHhhhhhh
Confidence 677776 78 999999999999999999999999999999877
No 452
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=91.95 E-value=7.9 Score=41.90 Aligned_cols=188 Identities=18% Similarity=0.120 Sum_probs=101.7
Q ss_pred CceEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEEecCCcCCCCH---HHHHHHHhcCCCCcEEeccccCCHH
Q 015424 176 LPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSF---ENLEAVRSAGVKCPLLCKEFIVDAW 252 (407)
Q Consensus 176 ~~~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~---edL~~Vr~a~v~lPVL~KDFIid~~ 252 (407)
..-|+|||--+. . + ....+.|+.|.+.||+-|=|.....- .|.- .-++.+++. +++|| +=|- .++.
T Consensus 151 ~~~v~aEI~~a~-~---l---~~i~~~A~~~~~~GADIIDIG~~st~-p~~~~v~~~V~~l~~~-~~~pI-SIDT-~~~~ 219 (499)
T TIGR00284 151 PLRVVAEIPPTV-A---E---DGIEGLAARMERDGADMVALGTGSFD-DDPDVVKEKVKTALDA-LDSPV-IADT-PTLD 219 (499)
T ss_pred CeEEEEEEcCCc-c---h---HHHHHHHHHHHHCCCCEEEECCCcCC-CcHHHHHHHHHHHHhh-CCCcE-EEeC-CCHH
Confidence 356999997663 2 2 24688899999999999999866541 1322 223333443 46775 5452 4556
Q ss_pred HHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeCCH-----HHHHHHhcccCCcEEEeeccccccccccc
Q 015424 253 QIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDE-----REMDRVLGIEGIELIGINNRNLAISIFSY 327 (407)
Q Consensus 253 QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVht~-----eElerAl~l~Ga~iIGINnRdL~~~~~~~ 327 (407)
-+.+|..+|||.|+=+ +-. .+.++...+...|..+++ +|+. +.+++.++. +.-.||. +-++.|+.+.
T Consensus 220 v~eaAL~aGAdiINsV-s~~---~~d~~~~l~a~~g~~vVl-m~~~~~~~~~~l~~~ie~--a~~~Gi~-~IIlDPglg~ 291 (499)
T TIGR00284 220 ELYEALKAGASGVIMP-DVE---NAVELASEKKLPEDAFVV-VPGNQPTNYEELAKAVKK--LRTSGYS-KVAADPSLSP 291 (499)
T ss_pred HHHHHHHcCCCEEEEC-Ccc---chhHHHHHHHHcCCeEEE-EcCCCCchHHHHHHHHHH--HHHCCCC-cEEEeCCCCc
Confidence 6778889999987743 332 344677778888886654 3422 334333321 2233332 3344566654
Q ss_pred cccccccCchhHHHHhhcccccccccCCceEEEeeCCCC----------HHHHHHHHHcCCCEEEEcccccC
Q 015424 328 RTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFT----------PDDIAYVQEAGVKAVLVGESIVK 389 (407)
Q Consensus 328 t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t----------~eD~~~l~~~GadaVLVGeaLmk 389 (407)
....+--.++....+.+. + + --+++.-|-+.. ..=...+.+.|++.+.|=+.--+
T Consensus 292 ~~~~l~~sL~~l~~~r~~-----~-~-~Pil~GvSNvtel~daDs~g~naal~~~a~e~Ga~ilrvhd~S~k 356 (499)
T TIGR00284 292 PLLGLLESIIRFRRASRL-----L-N-VPLVFGAANVTELVDADSHGVNALLAAIALEAGASILYVVEDSYK 356 (499)
T ss_pred chHHHHHHHHHHHHHHHh-----c-C-CcEEEeeccccCCCccchhHHHHHHHHHHHHcCCCEEEEcCCccc
Confidence 222222222222222111 1 1 114555555532 11223456778888888764433
No 453
>PRK04302 triosephosphate isomerase; Provisional
Probab=91.95 E-value=0.81 Score=43.55 Aligned_cols=80 Identities=24% Similarity=0.241 Sum_probs=55.2
Q ss_pred HHHHHHHHcCCcEEEEEecCCcCCC--------CHHHH----HHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEe
Q 015424 201 EIARSYEKGGAACLSILTDEKYFKG--------SFENL----EAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLI 268 (407)
Q Consensus 201 ~iA~ay~~~GA~aISVLTd~~~F~G--------s~edL----~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLi 268 (407)
+.++.+.+.|...|.+. |.|..| .++.+ +.+|+...++||+....|-++.++.++...|||+|+++
T Consensus 125 ~~~~~~~~~~~~~I~~~--p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVG 202 (223)
T PRK04302 125 ETSAAAAALGPDYVAVE--PPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLA 202 (223)
T ss_pred HHHHHHhcCCCCEEEEe--CccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEe
Confidence 34455666777777764 322222 23444 34665323799999888889999999999999999999
Q ss_pred ccCCCHHHHHHHHH
Q 015424 269 AAVLPDLDIRYMTK 282 (407)
Q Consensus 269 aaiL~~~~L~~Li~ 282 (407)
.+++..+++...++
T Consensus 203 sa~l~~~~~~~~~~ 216 (223)
T PRK04302 203 SGVVKAKDPEAALR 216 (223)
T ss_pred hHHhCCcCHHHHHH
Confidence 99997655544443
No 454
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=91.92 E-value=4.1 Score=40.08 Aligned_cols=177 Identities=19% Similarity=0.222 Sum_probs=110.1
Q ss_pred CCCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCC---
Q 015424 196 DFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL--- 272 (407)
Q Consensus 196 ~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL--- 272 (407)
.-||++.|...+++||..|-|---+.--.=..+|+..+|+. ++.| +.=..-.++..+.-|...--|.|.|.-.-.
T Consensus 21 ~Pdpv~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~-~~~~-lNlE~a~t~e~~~ia~~~kP~~vtLVPE~r~e~ 98 (239)
T PF03740_consen 21 YPDPVEAARIAEEAGADGITVHLREDRRHIQDRDVRRLREL-VKTP-LNLEMAPTEEMVDIALKVKPDQVTLVPEKREEL 98 (239)
T ss_dssp -S-HHHHHHHHHHTT-SEEEEEB-TT-SSS-HHHHHHHHHH--SSE-EEEEEESSHHHHHHHHHH--SEEEEE--SGGGB
T ss_pred CCCHHHHHHHHHHcCCCEEEeccCCCcCcCCHHHHHHHHHH-cccC-EEeccCCCHHHHHHHHhCCcCEEEECCCCCCCc
Confidence 34899999999999999999875444444467899999986 7777 444444667778889999999999975422
Q ss_pred ----------CHHHHHHHHHHHHHcCCcEEEEe-CCHHHHHHHhcccCCcEEEeeccccccccccccccccc----cC--
Q 015424 273 ----------PDLDIRYMTKICKLLGLTALVEV-HDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFE----VD-- 335 (407)
Q Consensus 273 ----------~~~~L~~Li~~a~~LGL~aLVEV-ht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~----vD-- 335 (407)
..+.|...++..+..|..+=+-+ -+.+.++.|.++ |++.|=+..-.|+. -+. .+
T Consensus 99 TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFiDP~~~qi~~A~~~-Gad~VELhTG~yA~--------a~~~~~~~~~e 169 (239)
T PF03740_consen 99 TTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFIDPDPEQIEAAKEL-GADRVELHTGPYAN--------AFDDAEEAEEE 169 (239)
T ss_dssp STTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHT-T-SEEEEETHHHHH--------HSSHHHHHHHH
T ss_pred CCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHc-CCCEEEEehhHhhh--------hcCCHHHHHHH
Confidence 23578888888888999884444 489999999998 99998875443311 011 00
Q ss_pred -chhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHc-CCCEEEEcccccC
Q 015424 336 -NSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEA-GVKAVLVGESIVK 389 (407)
Q Consensus 336 -l~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~-GadaVLVGeaLmk 389 (407)
++.....+.. ...-+.-|-+.-|+ +.+.+..+.+. +..-+=||.+|+.
T Consensus 170 ll~~l~~aa~~-----a~~lGL~VnAGHgL-~y~N~~~i~~i~~i~EvnIGHaiia 219 (239)
T PF03740_consen 170 LLERLRDAARY-----AHELGLGVNAGHGL-NYDNVRPIAAIPPIEEVNIGHAIIA 219 (239)
T ss_dssp HHHHHHHHHHH-----HHHTT-EEEEETT---TTTHHHHHTSTTEEEEEE-HHHHH
T ss_pred HHHHHHHHHHH-----HHHcCCEEecCCCC-CHHHHHHHHhCCCceEEecCHHHHH
Confidence 1122121211 11246778888888 66777766654 6888899988874
No 455
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=91.87 E-value=0.69 Score=46.36 Aligned_cols=138 Identities=21% Similarity=0.302 Sum_probs=88.1
Q ss_pred CCCccHHHHHHhhhhcCCCceEEEEecccCCCcCCCCCCCCHHHHHHHH--HHcCC--------cEEEEEecCCcCCCCH
Q 015424 158 PPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSY--EKGGA--------ACLSILTDEKYFKGSF 227 (407)
Q Consensus 158 ~~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~ay--~~~GA--------~aISVLTd~~~F~Gs~ 227 (407)
..++.+.++++.. + ..|+-=.|..|-- .+.+.| ..||. +|+-+=+-=-.+-||.
T Consensus 111 T~T~~~V~~~~~~-----~-~~i~~TRKT~Pgl----------R~leKyAV~~GGG~nHR~gLsDavliKDNHia~~g~i 174 (280)
T COG0157 111 TATARMVEALRGT-----N-VRIADTRKTTPGL----------RLLEKYAVRAGGGDNHRFGLSDAVLIKDNHIAAAGSI 174 (280)
T ss_pred HHHHHHHHHhhcc-----C-cEEEeccCCCccH----------HHHHHHHHHhcCCccccCCCcceEEehhhHHHHhccH
Confidence 3456788888764 2 6888888888842 233333 23332 3343333223444544
Q ss_pred -HHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHHHH
Q 015424 228 -ENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDR 303 (407)
Q Consensus 228 -edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVh---t~eEler 303 (407)
+-++.+|+.....|-+-=+ +-...|+.+|..+|||.|+|+- ++++++++.++.....| .+++|++ |.+-+..
T Consensus 175 ~~Av~~aR~~~~~~~kIEVE-vesle~~~eAl~agaDiImLDN--m~~e~~~~av~~l~~~~-~~~lEaSGgIt~~ni~~ 250 (280)
T COG0157 175 TEAVRRARAAAPFTKKIEVE-VESLEEAEEALEAGADIIMLDN--MSPEELKEAVKLLGLAG-RALLEASGGITLENIRE 250 (280)
T ss_pred HHHHHHHHHhCCCCceEEEE-cCCHHHHHHHHHcCCCEEEecC--CCHHHHHHHHHHhccCC-ceEEEEeCCCCHHHHHH
Confidence 3456666542233312111 1346799999999999999974 67788888888763334 8899999 8888888
Q ss_pred HhcccCCcEEEee
Q 015424 304 VLGIEGIELIGIN 316 (407)
Q Consensus 304 Al~l~Ga~iIGIN 316 (407)
.... |+|+|.+.
T Consensus 251 yA~t-GVD~IS~g 262 (280)
T COG0157 251 YAET-GVDVISVG 262 (280)
T ss_pred Hhhc-CCCEEEeC
Confidence 8886 99988873
No 456
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=91.85 E-value=0.94 Score=46.48 Aligned_cols=73 Identities=22% Similarity=0.218 Sum_probs=55.4
Q ss_pred HHHHHHHHHcCCcEEEEEecC----------------------CcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHH
Q 015424 200 VEIARSYEKGGAACLSILTDE----------------------KYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYA 257 (407)
Q Consensus 200 ~~iA~ay~~~GA~aISVLTd~----------------------~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eA 257 (407)
.+.|+..++.|+++|-|-.-. .|.-...+-|..+++..+++||+.-..|.+..++.++
T Consensus 200 ~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~GGI~~~~dv~k~ 279 (352)
T PRK05437 200 KETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASGGIRNGLDIAKA 279 (352)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHH
Confidence 588999999999999983211 0111123455666664248999999999999999999
Q ss_pred HHcCCCEEEEeccCC
Q 015424 258 RTKGADAVLLIAAVL 272 (407)
Q Consensus 258 r~~GADaVLLiaaiL 272 (407)
..+|||+|.+...+|
T Consensus 280 l~~GAd~v~ig~~~l 294 (352)
T PRK05437 280 LALGADAVGMAGPFL 294 (352)
T ss_pred HHcCCCEEEEhHHHH
Confidence 999999999987666
No 457
>PRK14566 triosephosphate isomerase; Provisional
Probab=91.83 E-value=1.9 Score=42.77 Aligned_cols=128 Identities=16% Similarity=0.148 Sum_probs=73.8
Q ss_pred HHHHcCCCEEEEeccCC------CHHHHHHHHHHHHHcCCcEEEEeCCHH--------------HHHHHhc-cc---CCc
Q 015424 256 YARTKGADAVLLIAAVL------PDLDIRYMTKICKLLGLTALVEVHDER--------------EMDRVLG-IE---GIE 311 (407)
Q Consensus 256 eAr~~GADaVLLiaaiL------~~~~L~~Li~~a~~LGL~aLVEVht~e--------------ElerAl~-l~---Ga~ 311 (407)
..+++|+++|+++++=. +++.+..-++.|.+.||.++++|-.-. +++.+++ .. ...
T Consensus 90 mL~d~G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pIvCvGEtleere~g~t~~vv~~Ql~~~l~~~~~~~~~~ 169 (260)
T PRK14566 90 MLKDAGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIEKNGTMAFDN 169 (260)
T ss_pred HHHHcCCCEEEECcccccCCCCcCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhcCCHHHHHHHHHHHHHhccchhhcCc
Confidence 35678999999999822 455666677888899999999998632 2333343 10 011
Q ss_pred -EEEeeccccccccccccccccccCchhHHHHhhcccc------cccccCCceEEEeeCCCCHHHHHHHHHc-CCCEEEE
Q 015424 312 -LIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERG------EIIRQKNIIVVGESGLFTPDDIAYVQEA-GVKAVLV 383 (407)
Q Consensus 312 -iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~------~~i~~~~v~vVAESGI~t~eD~~~l~~~-GadaVLV 383 (407)
+|..... .|| |+|-+ .+++...+....++. ..+ ..++.++-.|.+ +++.+..+... ++||+||
T Consensus 170 ivIAYEPv-WAI-GTG~~-----At~e~a~~v~~~IR~~l~~~~~~~-a~~~rIlYGGSV-~~~N~~~l~~~~dIDG~LV 240 (260)
T PRK14566 170 AIIAYEPL-WAV-GTGKS-----ATPEQAQEVHAFIRKRLSEVSPFI-GENIRILYGGSV-TPSNAADLFAQPDVDGGLI 240 (260)
T ss_pred EEEEECcH-Hhc-CCCCC-----CCHHHHHHHHHHHHHHHHhcCccc-cccceEEecCCC-CHhHHHHHhcCCCCCeEEe
Confidence 3333221 111 11111 123333332222221 111 134566666666 88999887654 6999999
Q ss_pred cccccCCCC
Q 015424 384 GESIVKQDD 392 (407)
Q Consensus 384 GeaLmk~~d 392 (407)
|.+=.++.+
T Consensus 241 GgASL~~~~ 249 (260)
T PRK14566 241 GGASLNSTE 249 (260)
T ss_pred chHhcCHHH
Confidence 998777644
No 458
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=91.83 E-value=1.1 Score=46.06 Aligned_cols=90 Identities=21% Similarity=0.337 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccc
Q 015424 273 PDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIR 352 (407)
Q Consensus 273 ~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~ 352 (407)
..+.|+.|.++++++||.++.|+++.++++.+.++ ++++-|-.|+. .. +.....+.+
T Consensus 142 g~~gL~~L~~~~~~~Gl~v~tev~d~~~~~~l~~~--vd~lqIgAr~~---------~N----~~LL~~va~-------- 198 (335)
T PRK08673 142 GEEGLKLLAEAREETGLPIVTEVMDPRDVELVAEY--VDILQIGARNM---------QN----FDLLKEVGK-------- 198 (335)
T ss_pred cHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHh--CCeEEECcccc---------cC----HHHHHHHHc--------
Confidence 35678889999999999999999999999999885 79999988887 33 333333332
Q ss_pred cCCceEEEeeCCC-CHHHHH----HHHHcCCCEEEEccc
Q 015424 353 QKNIIVVGESGLF-TPDDIA----YVQEAGVKAVLVGES 386 (407)
Q Consensus 353 ~~~v~vVAESGI~-t~eD~~----~l~~~GadaVLVGea 386 (407)
.+.+|+..-|.. |.+++. ++...|-+-+++-+.
T Consensus 199 -~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~er 236 (335)
T PRK08673 199 -TNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCER 236 (335)
T ss_pred -CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 367899999998 888875 455668877766663
No 459
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=91.81 E-value=0.16 Score=51.86 Aligned_cols=100 Identities=20% Similarity=0.192 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHcCCcEEEEEe----cCCcCCC--CHHHHHHHHhcCC--CCcEEeccccCCHHHHHHHHHcCCCEEEEec
Q 015424 198 DPVEIARSYEKGGAACLSILT----DEKYFKG--SFENLEAVRSAGV--KCPLLCKEFIVDAWQIYYARTKGADAVLLIA 269 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLT----d~~~F~G--s~edL~~Vr~a~v--~lPVL~KDFIid~~QI~eAr~~GADaVLLia 269 (407)
+..++++.+++.|++.|+|-. ...+..+ ...++..+++. + ++||+.-..|.++.++.++...|||.|.+.-
T Consensus 236 e~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~-~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR 314 (353)
T cd04735 236 DTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKER-IAGRLPLIAVGSINTPDDALEALETGADLVAIGR 314 (353)
T ss_pred HHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHH-hCCCCCEEEECCCCCHHHHHHHHHcCCChHHHhH
Confidence 567889999999999999842 2221111 35667778775 5 7999998888999999999888999999988
Q ss_pred cCCCHHHHHHHHHHHHHcCC-cEEEEeCCHHHHH
Q 015424 270 AVLPDLDIRYMTKICKLLGL-TALVEVHDEREMD 302 (407)
Q Consensus 270 aiL~~~~L~~Li~~a~~LGL-~aLVEVht~eEle 302 (407)
.++.+.++ .+.++. |. +-+..|-..+.++
T Consensus 315 ~liadPdl---~~k~~~-G~~~~ir~ci~~~~~~ 344 (353)
T cd04735 315 GLLVDPDW---VEKIKE-GREDEINLEIDPDDLE 344 (353)
T ss_pred HHHhCccH---HHHHHc-CChhhhhhcCCHHHHH
Confidence 77766565 233322 32 2244555555554
No 460
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=91.77 E-value=2.2 Score=37.49 Aligned_cols=131 Identities=15% Similarity=0.090 Sum_probs=78.1
Q ss_pred ceEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEEecCCcC-CCCHHHHHHHHhcCC-CCcEEeccccCCHHHH
Q 015424 177 PALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYF-KGSFENLEAVRSAGV-KCPLLCKEFIVDAWQI 254 (407)
Q Consensus 177 ~~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVLTd~~~F-~Gs~edL~~Vr~a~v-~lPVL~KDFIid~~QI 254 (407)
..+++.+.-..|.. .....|+.+.+.|+++|.+.....+. ....+.++.+|+. . ++||..+=-.......
T Consensus 58 ~~~~~~~~~~~~~~-------~~~~~a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~-~~~~~v~~~~~~~~~~~~ 129 (200)
T cd04722 58 LPLGVQLAINDAAA-------AVDIAAAAARAAGADGVEIHGAVGYLAREDLELIRELREA-VPDVKVVVKLSPTGELAA 129 (200)
T ss_pred CcEEEEEccCCchh-------hhhHHHHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHh-cCCceEEEEECCCCccch
Confidence 34677776554431 11123678889999999997554321 1135677888875 4 7888866322222222
Q ss_pred HHHHHcCCCEEEEeccCCCHH-------HHHHHHHHHHHcCCcEEEE--eCCHHHHHHHhcccCCcEEEee
Q 015424 255 YYARTKGADAVLLIAAVLPDL-------DIRYMTKICKLLGLTALVE--VHDEREMDRVLGIEGIELIGIN 316 (407)
Q Consensus 255 ~eAr~~GADaVLLiaaiL~~~-------~L~~Li~~a~~LGL~aLVE--Vht~eElerAl~l~Ga~iIGIN 316 (407)
..+...|+|.|.+.....+.. ....+....+..+...++. +.+.+.+..+++. ||+.|++.
T Consensus 130 ~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~-Gad~v~vg 199 (200)
T cd04722 130 AAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALAL-GADGVIVG 199 (200)
T ss_pred hhHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHh-CCCEEEec
Confidence 224678999999866544211 0122323334456555554 4577999999997 99999874
No 461
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=91.69 E-value=1.1 Score=44.46 Aligned_cols=88 Identities=18% Similarity=0.345 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhccccccccc
Q 015424 274 DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQ 353 (407)
Q Consensus 274 ~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~ 353 (407)
.+.++.|.++++++||.++.|+++...++.+.++ ++++-|-.|+. .. .....++.+
T Consensus 77 ~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~--vd~~kIga~~~---------~n----~~LL~~~a~--------- 132 (266)
T PRK13398 77 EEGLKILKEVGDKYNLPVVTEVMDTRDVEEVADY--ADMLQIGSRNM---------QN----FELLKEVGK--------- 132 (266)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeCChhhHHHHHHh--CCEEEECcccc---------cC----HHHHHHHhc---------
Confidence 6689999999999999999999999999999886 78999988877 32 223333322
Q ss_pred CCceEEEeeCCC-CHHHHHH----HHHcCCCEEEEcc
Q 015424 354 KNIIVVGESGLF-TPDDIAY----VQEAGVKAVLVGE 385 (407)
Q Consensus 354 ~~v~vVAESGI~-t~eD~~~----l~~~GadaVLVGe 385 (407)
.+.+|+..-|.. +++++.. +...|-.-+.+-+
T Consensus 133 ~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~ 169 (266)
T PRK13398 133 TKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCE 169 (266)
T ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEE
Confidence 367899999988 8888754 4556775555543
No 462
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=91.66 E-value=0.72 Score=47.00 Aligned_cols=109 Identities=21% Similarity=0.231 Sum_probs=73.1
Q ss_pred HHHHHHhhhhcCCCceEEEEecccCCCcCCCC--CCCCHHHHHHHHHHcC-CcEEEEEe---c----------CCcCCCC
Q 015424 163 FIGALMAANQRTGLPALIAEVKKASPSRGILR--EDFDPVEIARSYEKGG-AACLSILT---D----------EKYFKGS 226 (407)
Q Consensus 163 f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~--~~~dp~~iA~ay~~~G-A~aISVLT---d----------~~~F~Gs 226 (407)
.++++++.. | .-++.-+| -|+....-. +..+..++|+.+++.| ++.|+|-. . +.++...
T Consensus 197 iv~~ir~~v---g-~~~~v~iR-l~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ 271 (343)
T cd04734 197 VLAAVRAAV---G-PDFIVGIR-ISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPG 271 (343)
T ss_pred HHHHHHHHc---C-CCCeEEEE-eehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcc
Confidence 445555542 2 23455555 444432110 1235678899999998 89999831 1 1122222
Q ss_pred --HHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcC-CCEEEEeccCCCHHHH
Q 015424 227 --FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLIAAVLPDLDI 277 (407)
Q Consensus 227 --~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~G-ADaVLLiaaiL~~~~L 277 (407)
.+..+.+|+. +++||+.-+-|.++.++.++.+.| ||.|.+.-.+|.+.+|
T Consensus 272 ~~~~~~~~ik~~-~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l 324 (343)
T cd04734 272 PFLPLAARIKQA-VDLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHL 324 (343)
T ss_pred hhHHHHHHHHHH-cCCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCccH
Confidence 4666788886 899999988889999999998765 9999998888877666
No 463
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=91.60 E-value=6.9 Score=38.38 Aligned_cols=174 Identities=16% Similarity=0.172 Sum_probs=98.0
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEE----eccccCCHHHHHH-HHHcCCCEEEEeccCC
Q 015424 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL----CKEFIVDAWQIYY-ARTKGADAVLLIAAVL 272 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL----~KDFIid~~QI~e-Ar~~GADaVLLiaaiL 272 (407)
++.++++.... -+..+-| --|-|+.++..-++.+++. .. +|+ .-|.--+-....+ +...|||+|.+ +...
T Consensus 25 ~~~~~~~~~~~-~~~~~Kv-g~~l~~~~g~~~~~el~~~-~~-~VflDlK~~DIpnT~~~~~~~~~~~g~d~vtv-H~~~ 99 (240)
T COG0284 25 EALAFVDKLGP-TVDFVKV-GKPLVAFFGADILEELKAR-GK-KVFLDLKLADIPNTVALAAKAAADLGADAVTV-HAFG 99 (240)
T ss_pred HHHHHHHHhhc-cccEEEE-chHHHHhccHHHHHHHHHh-CC-ceEEeeecccchHHHHHHHHHhhhcCCcEEEE-eCcC
Confidence 34455555554 3444555 3455666777788888875 33 666 3464222233333 46789999988 5566
Q ss_pred CHHHHHHHHHHHHHcC--CcEEEEeCCHHHHH------------HHhcc----cCCcEEEeecccccccccccccccccc
Q 015424 273 PDLDIRYMTKICKLLG--LTALVEVHDEREMD------------RVLGI----EGIELIGINNRNLAISIFSYRTETFEV 334 (407)
Q Consensus 273 ~~~~L~~Li~~a~~LG--L~aLVEVht~eEle------------rAl~l----~Ga~iIGINnRdL~~~~~~~t~~Tf~v 334 (407)
..+-++.+.+.+..+| +-++..-.+..+.+ .++.+ ..+-++|+- +
T Consensus 100 G~~~~~~~~e~~~~~~~~vl~vT~lts~~~~~~~~~~~~~~~~~~v~~~a~~~~~~G~dgvv-----------------~ 162 (240)
T COG0284 100 GFDMLRAAKEALEAGGPFVLAVTSLTSMGELQLAELGINSSLEEQVLRLAKLAGEAGLDGVV-----------------C 162 (240)
T ss_pred CHHHHHHHHHHHhhcCceEEEEEeCCCchhhhhhhccccchHHHHHHHHHHHhccCCceEEE-----------------c
Confidence 6667888888888876 33344444444432 11111 011133332 1
Q ss_pred CchhHHHHhhcccccccccCCceEE-----E------eeCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015424 335 DNSNTKKLLEGERGEIIRQKNIIVV-----G------ESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 402 (407)
Q Consensus 335 Dl~~t~~L~~~~~~~~i~~~~v~vV-----A------ESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 402 (407)
..+....+.+. .+.+..++ + .+|+-|+.++ ..+|+|-++||.+|+.++||.+.++++..
T Consensus 163 ~~~e~~~ir~~------~g~~~~iltPGIg~~~~~gdQ~~~~t~~~A---~~~Gad~ivVGR~I~~a~~p~~a~~~i~~ 232 (240)
T COG0284 163 SAEEVAAIREI------LGPDFLILTPGIGAGSQGGDQGRVMTPGEA---VRAGADYIVVGRPITQAGDPVAAARAIAR 232 (240)
T ss_pred CHHHHHHHHHh------cCCCcEEECCCcCcCcCCCCcccccCHHHH---HhcCCCEEEEChhhhcCCChHHHHHHHHH
Confidence 22223333322 11121221 1 3445556654 45899999999999999999999887653
No 464
>PRK07094 biotin synthase; Provisional
Probab=91.57 E-value=16 Score=36.41 Aligned_cols=176 Identities=18% Similarity=0.133 Sum_probs=97.1
Q ss_pred HHHHHHHHHHcCCcEEEEEecC-CcCCCCHHHHH----HHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCC-
Q 015424 199 PVEIARSYEKGGAACLSILTDE-KYFKGSFENLE----AVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL- 272 (407)
Q Consensus 199 p~~iA~ay~~~GA~aISVLTd~-~~F~Gs~edL~----~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL- 272 (407)
..+.++.+.+.|+..+.+.... .++ ..+++. .+++. .++++-.--...++.++...+.+|+|.|.+.....
T Consensus 75 i~~~~~~~~~~g~~~i~l~gG~~~~~--~~~~l~~l~~~i~~~-~~l~i~~~~g~~~~e~l~~Lk~aG~~~v~~glEs~~ 151 (323)
T PRK07094 75 ILECAKKAYELGYRTIVLQSGEDPYY--TDEKIADIIKEIKKE-LDVAITLSLGERSYEEYKAWKEAGADRYLLRHETAD 151 (323)
T ss_pred HHHHHHHHHHCCCCEEEEecCCCCCC--CHHHHHHHHHHHHcc-CCceEEEecCCCCHHHHHHHHHcCCCEEEeccccCC
Confidence 4444666677899888876432 222 233333 34442 34555332234678888889999999999876644
Q ss_pred -----------CHHHHHHHHHHHHHcCCcE----EEE--eCCHHHHH----HHhcccCCcEEEeeccccccccccccccc
Q 015424 273 -----------PDLDIRYMTKICKLLGLTA----LVE--VHDEREMD----RVLGIEGIELIGINNRNLAISIFSYRTET 331 (407)
Q Consensus 273 -----------~~~~L~~Li~~a~~LGL~a----LVE--Vht~eEle----rAl~l~Ga~iIGINnRdL~~~~~~~t~~T 331 (407)
+.++..+.++.++++|+.+ ++- -.|.+++. .+.++ +++.++++.... .++++.-..
T Consensus 152 ~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l-~~~~v~~~~~~P-~pgTpl~~~- 228 (323)
T PRK07094 152 KELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKEL-DLDMIGIGPFIP-HPDTPLKDE- 228 (323)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHHHhC-CCCeeeeecccc-CCCCCcccC-
Confidence 3345566677788888865 443 34666644 45555 788899876533 122222111
Q ss_pred cccCchhHHHHhhcccccccccCCceEEEeeCC--CCHHHHHHHHHcCCCEEEE
Q 015424 332 FEVDNSNTKKLLEGERGEIIRQKNIIVVGESGL--FTPDDIAYVQEAGVKAVLV 383 (407)
Q Consensus 332 f~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI--~t~eD~~~l~~~GadaVLV 383 (407)
...+++...+++...+ ..++..++.. .+|. -.++-...+..+||+.+..
T Consensus 229 ~~~~~~~~~~~~a~~R-~~lp~~~i~~--~~~~~~~~~~~~~~~l~~Gan~~~~ 279 (323)
T PRK07094 229 KGGSLELTLKVLALLR-LLLPDANIPA--TTALGTLNPDGREKGLKAGANVVMP 279 (323)
T ss_pred CCCCHHHHHHHHHHHH-HhCcCCCCcc--cCCccccCchhHHHHHHcCCceecC
Confidence 1134444444433221 1121122222 2333 2345456788999997753
No 465
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=91.57 E-value=0.75 Score=47.60 Aligned_cols=45 Identities=13% Similarity=0.226 Sum_probs=41.0
Q ss_pred CceEEEeeCCCCHHHHHHHHHcC-CCEEEEcccccCCCChHHHHHh
Q 015424 355 NIIVVGESGLFTPDDIAYVQEAG-VKAVLVGESIVKQDDPGKGITG 399 (407)
Q Consensus 355 ~v~vVAESGI~t~eD~~~l~~~G-adaVLVGeaLmk~~dp~~~i~~ 399 (407)
++++++.|||++++++.++.+.| +|.|-+|.+++..+|...++++
T Consensus 305 ~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~~~ 350 (382)
T cd02931 305 DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLADPDVVNKIRR 350 (382)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHhCccHHHHHHc
Confidence 57899999999999999999876 9999999999999998877765
No 466
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=91.56 E-value=6.9 Score=38.96 Aligned_cols=145 Identities=19% Similarity=0.255 Sum_probs=93.0
Q ss_pred ecCCcCCC-----CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEE
Q 015424 218 TDEKYFKG-----SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTAL 292 (407)
Q Consensus 218 Td~~~F~G-----s~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aL 292 (407)
|-+..|+| .++.|..+|+. +.+||+. | |-++.|+..+..+ +|.+-+.+....+-+ |++.+.+.|.-++
T Consensus 48 Tsp~sFqG~G~eeGL~iL~~vk~~-~glpvvT-e-V~~~~~~~~vae~-vDilQIgArn~rn~~---LL~a~g~t~kpV~ 120 (258)
T TIGR01362 48 SSIHSFRGPGLEEGLKILQKVKEE-FGVPILT-D-VHESSQCEPVAEV-VDIIQIPAFLCRQTD---LLVAAAKTGRIVN 120 (258)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHH-hCCceEE-E-eCCHHHHHHHHhh-CcEEEeCchhcchHH---HHHHHhccCCeEE
Confidence 44556666 46788899886 8999997 3 4789999999888 999888887665543 4555556677666
Q ss_pred EEeC---CHHHH----HHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEe----
Q 015424 293 VEVH---DEREM----DRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGE---- 361 (407)
Q Consensus 293 VEVh---t~eEl----erAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAE---- 361 (407)
+-=. +.+|. +++... |..-|...-|.. -|+| +++.+|+...--+.+. +.+||.-
T Consensus 121 lKrG~~~t~~e~l~aaeyi~~~-Gn~~viLcERG~---tf~y--~r~~~D~~~ip~~k~~---------~~PVi~DpSHs 185 (258)
T TIGR01362 121 VKKGQFLSPWDMKNVVEKVLST-GNKNILLCERGT---SFGY--NNLVVDMRSLPIMREL---------GCPVIFDATHS 185 (258)
T ss_pred ecCCCcCCHHHHHHHHHHHHHc-CCCcEEEEeCCC---CcCC--CCcccchhhhHHHHhc---------CCCEEEeCCcc
Confidence 6433 66665 444553 666666667764 2344 4566787765544331 2333321
Q ss_pred -----------eCCCC--HHHHHHHHHcCCCEEEEc
Q 015424 362 -----------SGLFT--PDDIAYVQEAGVKAVLVG 384 (407)
Q Consensus 362 -----------SGI~t--~eD~~~l~~~GadaVLVG 384 (407)
+|.+. +.-++....+|+||++|-
T Consensus 186 vq~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl~iE 221 (258)
T TIGR01362 186 VQQPGGLGGASGGLREFVPTLARAAVAVGIDGLFME 221 (258)
T ss_pred ccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEEEEE
Confidence 33322 223345667899999986
No 467
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=91.55 E-value=16 Score=36.84 Aligned_cols=166 Identities=14% Similarity=0.196 Sum_probs=105.9
Q ss_pred HHHHHHHHH----HcCCcEEEE-------EecCCcCCC-----CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCC
Q 015424 199 PVEIARSYE----KGGAACLSI-------LTDEKYFKG-----SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGA 262 (407)
Q Consensus 199 p~~iA~ay~----~~GA~aISV-------LTd~~~F~G-----s~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GA 262 (407)
..++|+... +.|+..+-= -|-+..|+| .++.|+.+++. +.+||+. | |-+++|+..+..+ +
T Consensus 32 ~~~iA~~lk~i~~~~g~~~~fK~sf~KapRTSp~sFqG~G~eeGL~iL~~vk~~-~GlpvvT-e-V~~~~~~~~~ae~-v 107 (281)
T PRK12457 32 TLDVCGEYVEVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEGLRIFEEVKAR-FGVPVIT-D-VHEVEQAAPVAEV-A 107 (281)
T ss_pred HHHHHHHHHHHHHHCCCcEEeeeccCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-HCCceEE-E-eCCHHHHHHHhhh-C
Confidence 445566543 578766554 477788888 56788888886 8999997 3 4789999999888 9
Q ss_pred CEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHH----HHHhcccCCcEEEeeccccccccccccccccccC
Q 015424 263 DAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREM----DRVLGIEGIELIGINNRNLAISIFSYRTETFEVD 335 (407)
Q Consensus 263 DaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVh---t~eEl----erAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vD 335 (407)
|.+-+.+....+-+ |++.+.+-|.-+++-=. +.+|. +++... |..-|.+.-|.. -++|+ ++.+|
T Consensus 108 DilQIgAr~~rntd---LL~a~~~t~kpV~lKrGqf~s~~e~~~aae~i~~~-Gn~~vilcERG~---~fgy~--~~~~D 178 (281)
T PRK12457 108 DVLQVPAFLARQTD---LVVAIAKTGKPVNIKKPQFMSPTQMKHVVSKCREA-GNDRVILCERGS---SFGYD--NLVVD 178 (281)
T ss_pred eEEeeCchhhchHH---HHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHc-CCCeEEEEeCCC---CCCCC--Ccccc
Confidence 99888877665544 44555555666655433 55655 444453 777777777765 24564 46678
Q ss_pred chhHHHHhhcccccccccCCceEEEe---------------eCCCC--HHHHHHHHHcCCCEEEEc
Q 015424 336 NSNTKKLLEGERGEIIRQKNIIVVGE---------------SGLFT--PDDIAYVQEAGVKAVLVG 384 (407)
Q Consensus 336 l~~t~~L~~~~~~~~i~~~~v~vVAE---------------SGI~t--~eD~~~l~~~GadaVLVG 384 (407)
+...-.+.+.. .+.+||.- +|.+. +.-++....+|+||++|-
T Consensus 179 ~~~ip~mk~~~-------t~lPVi~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl~iE 237 (281)
T PRK12457 179 MLGFRQMKRTT-------GDLPVIFDVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGLFLE 237 (281)
T ss_pred hHHHHHHHhhC-------CCCCEEEeCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence 87655544321 13334321 33221 223455667899999996
No 468
>PLN02858 fructose-bisphosphate aldolase
Probab=91.47 E-value=12 Score=45.20 Aligned_cols=142 Identities=19% Similarity=0.225 Sum_probs=102.4
Q ss_pred CCCcEE-eccccCCHHHHHHHHHcCCCEEEEeccCCCHH----HHHHHHHHHHHcCCcEEEE------------------
Q 015424 238 VKCPLL-CKEFIVDAWQIYYARTKGADAVLLIAAVLPDL----DIRYMTKICKLLGLTALVE------------------ 294 (407)
Q Consensus 238 v~lPVL-~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~----~L~~Li~~a~~LGL~aLVE------------------ 294 (407)
.++||- .-|-..+...|.+|..+|-+.|.++.+-|+-+ .-++++++||.+|+.+=.|
T Consensus 1168 ~~vpV~lHLDHg~~~~~i~~ai~~Gf~SVM~DgS~l~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v~g~e~~~~~~~~~~ 1247 (1378)
T PLN02858 1168 ASVPITVHFDHGTSKHELLEALELGFDSVMVDGSHLSFTENISYTKSISSLAHSKGLMVEAELGRLSGTEDGLTVEEYEA 1247 (1378)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccc
Confidence 468874 66777788889999999999999999999753 3567889999988776222
Q ss_pred -eCCHHHHHHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEE--EeeCCCCHHHHH
Q 015424 295 -VHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVV--GESGLFTPDDIA 371 (407)
Q Consensus 295 -Vht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vV--AESGI~t~eD~~ 371 (407)
..|.+|+.+.++..|+|.+.+.-=+. || .|+......|++..+++.+.+. ..++++| ..||+ ..++++
T Consensus 1248 ~~T~p~~a~~Fv~~TgvD~LAvaiGt~--HG-~Y~~~~p~l~~~~l~~i~~~~~-----~~~vpLVlHGgSG~-~~~~~~ 1318 (1378)
T PLN02858 1248 KLTDVDQAKEFIDETGIDALAVCIGNV--HG-KYPASGPNLRLDLLKELRALSS-----KKGVLLVLHGASGL-PESLIK 1318 (1378)
T ss_pred CCCCHHHHHHHHHhcCCcEEeeecccc--cc-cCCCCCCccCHHHHHHHHHHhc-----CCCCcEEEeCCCCC-CHHHHH
Confidence 22557777777655899888764333 11 2332246788888888877531 1234444 56777 478899
Q ss_pred HHHHcCCCEEEEccccc
Q 015424 372 YVQEAGVKAVLVGESIV 388 (407)
Q Consensus 372 ~l~~~GadaVLVGeaLm 388 (407)
++.++|+.-|=|++.+.
T Consensus 1319 ~ai~~Gi~KiNi~T~~~ 1335 (1378)
T PLN02858 1319 ECIENGVRKFNVNTEVR 1335 (1378)
T ss_pred HHHHcCCeEEEeCHHHH
Confidence 99999999999998874
No 469
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=91.45 E-value=2.3 Score=45.38 Aligned_cols=134 Identities=16% Similarity=0.151 Sum_probs=87.1
Q ss_pred CCceEEEEecccCCCcCCCCCCCCHHHHHHHH-----HHcC----CcEEEEEecCCcCCCCHHHH----HHHHhcCCCCc
Q 015424 175 GLPALIAEVKKASPSRGILREDFDPVEIARSY-----EKGG----AACLSILTDEKYFKGSFENL----EAVRSAGVKCP 241 (407)
Q Consensus 175 ~~~~vIAEvKraSPSkG~i~~~~dp~~iA~ay-----~~~G----A~aISVLTd~~~F~Gs~edL----~~Vr~a~v~lP 241 (407)
+++.|.+|| ++.. ++..+.+.++.| ...| |+.|.+-..+ |+++.+ +.+++. +++|
T Consensus 90 np~~Ia~eI---~D~l----~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s----~dp~~v~~~Vk~V~~~-~dvP 157 (450)
T PRK04165 90 NPTGIAVDV---SDTM----DDEEIDARLKKINNFQFERVGEILKLDMVALRNAS----GDPEKFAKAVKKVAET-TDLP 157 (450)
T ss_pred CCCEEEEEE---eCCC----ChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCC----CCHHHHHHHHHHHHHh-cCCC
Confidence 567899999 4431 234566666777 5556 9999986544 355533 333443 6889
Q ss_pred EEeccccCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeeccccc
Q 015424 242 LLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLA 321 (407)
Q Consensus 242 VL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~ 321 (407)
|.--- .|+.-+.+|.++|||..-|+.++-. +.++.+.+.++++|..+.+.-.+.+.+.+..+. +.-.|| .+-+.
T Consensus 158 LSIDT--~dpevleaAleagad~~plI~Sat~-dN~~~m~~la~~yg~pvVv~~~dl~~L~~lv~~--~~~~GI-~dIIL 231 (450)
T PRK04165 158 LILCS--EDPAVLKAALEVVADRKPLLYAATK-ENYEEMAELAKEYNCPLVVKAPNLEELKELVEK--LQAAGI-KDLVL 231 (450)
T ss_pred EEEeC--CCHHHHHHHHHhcCCCCceEEecCc-chHHHHHHHHHHcCCcEEEEchhHHHHHHHHHH--HHHcCC-CcEEE
Confidence 74322 5688888899999999888887553 478889999999999888865454555544332 233444 34344
Q ss_pred ccccc
Q 015424 322 ISIFS 326 (407)
Q Consensus 322 ~~~~~ 326 (407)
.|+.+
T Consensus 232 DPg~g 236 (450)
T PRK04165 232 DPGTE 236 (450)
T ss_pred CCCCc
Confidence 55553
No 470
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=91.42 E-value=8.1 Score=38.37 Aligned_cols=107 Identities=14% Similarity=0.118 Sum_probs=74.4
Q ss_pred CCceEEEEecccCCCcCCCCCCCCHHHHHHHHHHcC-CcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHH
Q 015424 175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGG-AACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQ 253 (407)
Q Consensus 175 ~~~~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~G-A~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~Q 253 (407)
....|.+.|+...-+. + .+.+..+.|+.....| |++|-|---..--.=+++.|+.+|++..++|||.... +++..
T Consensus 138 ~~v~i~adV~~kh~~~--l-~~~~~~e~a~~~~~~~~aDavivtG~~TG~~~d~~~l~~vr~~~~~~PvllggG-vt~eN 213 (257)
T TIGR00259 138 SEVKILADIVVKHAVH--L-GNRDLESIALDTVERGLADAVILSGKTTGTEVDLELLKLAKETVKDTPVLAGSG-VNLEN 213 (257)
T ss_pred CCcEEEeceeecccCc--C-CCCCHHHHHHHHHHhcCCCEEEECcCCCCCCCCHHHHHHHHhccCCCeEEEECC-CCHHH
Confidence 4578999987664331 2 2568899999877666 9998874221111126788888887434789988775 78888
Q ss_pred HHHHHHcCCCEEEEeccC---------CCHHHHHHHHHHHHH
Q 015424 254 IYYARTKGADAVLLIAAV---------LPDLDIRYMTKICKL 286 (407)
Q Consensus 254 I~eAr~~GADaVLLiaai---------L~~~~L~~Li~~a~~ 286 (407)
+.++... ||++.+.+.+ .+.+.++.|++.+++
T Consensus 214 v~e~l~~-adGviVgS~~K~~G~~~n~~D~~rV~~Fm~~v~~ 254 (257)
T TIGR00259 214 VEELLSI-ADGVIVATTIKKDGVFNNFVDQARVSQFVEKVAH 254 (257)
T ss_pred HHHHHhh-CCEEEECCCcccCCccCCCcCHHHHHHHHHHHHH
Confidence 9888776 9999998775 234566777776654
No 471
>PLN02591 tryptophan synthase
Probab=91.42 E-value=0.51 Score=46.38 Aligned_cols=44 Identities=18% Similarity=0.139 Sum_probs=37.0
Q ss_pred HHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCC
Q 015424 228 ENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (407)
Q Consensus 228 edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (407)
+.++.+|+. +++||++.=.|-++.|+.++..+|||+|+...+++
T Consensus 179 ~~i~~vk~~-~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalV 222 (250)
T PLN02591 179 SLLQELKEV-TDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMV 222 (250)
T ss_pred HHHHHHHhc-CCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHH
Confidence 338888886 89999995555669999999999999999998764
No 472
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=91.31 E-value=0.5 Score=45.85 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCC-CCcEEeccccCCHHHHHHHHHcCCCEEEEeccCCCH
Q 015424 227 FENLEAVRSAGV-KCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPD 274 (407)
Q Consensus 227 ~edL~~Vr~a~v-~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~ 274 (407)
.+.++.+|+. + ++||.....|.++.|+.++..+|||.|.++..+..+
T Consensus 167 ~e~i~~v~~~-~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~d 214 (223)
T TIGR01768 167 PELVAEVKKV-LDKARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEED 214 (223)
T ss_pred HHHHHHHHHH-cCCCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhC
Confidence 7889999986 6 899999999999999999999999999999888866
No 473
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=91.31 E-value=1.3 Score=42.52 Aligned_cols=90 Identities=17% Similarity=0.114 Sum_probs=65.4
Q ss_pred eEEEEecccC-CCcCCCCCCCCHHHHHHHHHHcCCcEEEEEecCC----cCCCCHHHHHHHHhcCCCCcEEeccccCCHH
Q 015424 178 ALIAEVKKAS-PSRGILREDFDPVEIARSYEKGGAACLSILTDEK----YFKGSFENLEAVRSAGVKCPLLCKEFIVDAW 252 (407)
Q Consensus 178 ~vIAEvKraS-PSkG~i~~~~dp~~iA~ay~~~GA~aISVLTd~~----~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~ 252 (407)
.+=..+|..- -..|+. .++.++...|...|+ .+-+ ||-. -.+=+++.++.+++. +++||+.-..|-++.
T Consensus 124 vvslD~~~g~v~~~g~~---~~~~~~~~~~~~~g~-~ii~-tdI~~dGt~~G~d~eli~~i~~~-~~~pvia~GGi~s~e 197 (221)
T TIGR00734 124 VVSLDFKEKFLDASGLF---ESLEEVRDFLNSFDY-GLIV-LDIHSVGTMKGPNLELLTKTLEL-SEHPVMLGGGISGVE 197 (221)
T ss_pred EEEEEeECCcccccccc---ccHHHHHHHHHhcCC-EEEE-EECCccccCCCCCHHHHHHHHhh-CCCCEEEeCCCCCHH
Confidence 4555666432 234554 278888888888887 5544 3332 222367888888886 899999999999999
Q ss_pred HHHHHHHcCCCEEEEeccCCC
Q 015424 253 QIYYARTKGADAVLLIAAVLP 273 (407)
Q Consensus 253 QI~eAr~~GADaVLLiaaiL~ 273 (407)
++.++...|||+|++..++..
T Consensus 198 d~~~l~~~Ga~~vivgsal~~ 218 (221)
T TIGR00734 198 DLELLKEMGVSAVLVATAVHK 218 (221)
T ss_pred HHHHHHHCCCCEEEEhHHhhC
Confidence 999998899999999876653
No 474
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=91.09 E-value=16 Score=35.68 Aligned_cols=162 Identities=16% Similarity=0.092 Sum_probs=93.5
Q ss_pred HHHHHHHHHcCCcEEEEE-ecCCcCCCCHHHHHHH----Hhc-CCCCcEEeccccCCHH----HHHHHHHcCCCEEEEec
Q 015424 200 VEIARSYEKGGAACLSIL-TDEKYFKGSFENLEAV----RSA-GVKCPLLCKEFIVDAW----QIYYARTKGADAVLLIA 269 (407)
Q Consensus 200 ~~iA~ay~~~GA~aISVL-Td~~~F~Gs~edL~~V----r~a-~v~lPVL~KDFIid~~----QI~eAr~~GADaVLLia 269 (407)
.++.+.+.+.|+.+|-|+ |-..++.=+.+.-..+ ++. .-++||+..=.-.+.. +...|..+|||+|+++.
T Consensus 24 ~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~ 103 (284)
T cd00950 24 ERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVT 103 (284)
T ss_pred HHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcc
Confidence 344566678899999987 2223333333333322 332 1258988543322332 44567899999999986
Q ss_pred cCC---CHHHHHH-HHHHHHHcCCcEEEEe--------CCHHHHHHHhcccCCcEEEeeccccccccccccccccccCch
Q 015424 270 AVL---PDLDIRY-MTKICKLLGLTALVEV--------HDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNS 337 (407)
Q Consensus 270 aiL---~~~~L~~-Li~~a~~LGL~aLVEV--------ht~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~ 337 (407)
-.. +++++.. +-+.+...++..++=- =+.+.+.+..+. ..++||- .-..|+.
T Consensus 104 P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~~--p~v~giK--------------~s~~~~~ 167 (284)
T cd00950 104 PYYNKPSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETVLRLAEH--PNIVGIK--------------EATGDLD 167 (284)
T ss_pred cccCCCCHHHHHHHHHHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHhcC--CCEEEEE--------------ECCCCHH
Confidence 633 4444444 4445665677776431 145566666653 5799994 3334566
Q ss_pred hHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccc
Q 015424 338 NTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESI 387 (407)
Q Consensus 338 ~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaL 387 (407)
...++.... +.+ +.|..|. + +.+.....+|++|++-|.+=
T Consensus 168 ~~~~~~~~~------~~~-~~v~~G~--d-~~~~~~~~~G~~G~~s~~~n 207 (284)
T cd00950 168 RVSELIALC------PDD-FAVLSGD--D-ALTLPFLALGGVGVISVAAN 207 (284)
T ss_pred HHHHHHHhC------CCC-eEEEeCC--h-HhHHHHHHCCCCEEEehHHH
Confidence 666665432 223 3444442 2 34556678999999988763
No 475
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=91.08 E-value=15 Score=38.06 Aligned_cols=148 Identities=12% Similarity=0.007 Sum_probs=98.9
Q ss_pred CCCcEE-eccccC--CHHHHHHHHHcC-----------CCEEEEeccCCCHH----HHHHHHHHHHHcCCcEEEE-----
Q 015424 238 VKCPLL-CKEFIV--DAWQIYYARTKG-----------ADAVLLIAAVLPDL----DIRYMTKICKLLGLTALVE----- 294 (407)
Q Consensus 238 v~lPVL-~KDFIi--d~~QI~eAr~~G-----------ADaVLLiaaiL~~~----~L~~Li~~a~~LGL~aLVE----- 294 (407)
.++||- .-|-.. +...|..|..+| -+.|.++.+-++-+ .-++++++|+..|+.+=.|
T Consensus 84 ~~VPV~lHLDH~~~~~~e~i~~ai~~G~~~~~~~~~~~FsSVMiDgS~l~~eeNi~~T~~vve~Ah~~gi~VEaElG~ig 163 (340)
T cd00453 84 YGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLEIELGCTG 163 (340)
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHcCCccccccCCCCceeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEecC
Confidence 478875 456555 677899999999 99999999999753 3566888888877766111
Q ss_pred ----------------eCCHHHHHHHhcccC----CcEEEeeccccccccccccccccccCchhHHHHhhcccc-ccccc
Q 015424 295 ----------------VHDEREMDRVLGIEG----IELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERG-EIIRQ 353 (407)
Q Consensus 295 ----------------Vht~eElerAl~l~G----a~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~-~~i~~ 353 (407)
-.+.+|+.+..+.-| .+.+.+.--+. ||. |...+...|++...++.+.+.. -.+..
T Consensus 164 G~ed~~~~~~~~~~~~yT~Peea~~Fv~~Tg~i~pvD~LAvsiGt~--HG~-Yk~g~p~L~~~~L~~i~~~~~~~~gl~~ 240 (340)
T cd00453 164 GEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNV--HGV-YKKGNVVLTPTILRDSQEYVSKKHNLPH 240 (340)
T ss_pred CccCCcccccccccccCCCHHHHHHHHHHhCCCCcceEEeeecCcc--ccC-CCCCCCccCHHHHHHHHHHHHhhcccCC
Confidence 124778877775347 77777754333 222 3322567888888888765311 00111
Q ss_pred CCceEEE--eeCCCCHHHHHHHHHcCCCEEEEcccccC
Q 015424 354 KNIIVVG--ESGLFTPDDIAYVQEAGVKAVLVGESIVK 389 (407)
Q Consensus 354 ~~v~vVA--ESGI~t~eD~~~l~~~GadaVLVGeaLmk 389 (407)
.++++|. .||+ +.++++++.++|+.-|=|++.+..
T Consensus 241 ~~~pLVlHGgSG~-~~e~~~~ai~~Gi~KiNi~Te~~~ 277 (340)
T cd00453 241 NSLNFVFHGGSGS-TAQEIKDSVSYGVVKMNIDTDTQW 277 (340)
T ss_pred CCCceEEeCCCCC-CHHHHHHHHHcCCeEEEcccHHHH
Confidence 1455554 5555 567899999999999999988643
No 476
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=91.06 E-value=4.3 Score=40.72 Aligned_cols=140 Identities=11% Similarity=0.049 Sum_probs=80.8
Q ss_pred HHHHhcCCCCcEEe--ccccCCHHHH----HHHHHcCCCEEEE-e---------------ccCCCHHHHHHHHHHHHHc-
Q 015424 231 EAVRSAGVKCPLLC--KEFIVDAWQI----YYARTKGADAVLL-I---------------AAVLPDLDIRYMTKICKLL- 287 (407)
Q Consensus 231 ~~Vr~a~v~lPVL~--KDFIid~~QI----~eAr~~GADaVLL-i---------------aaiL~~~~L~~Li~~a~~L- 287 (407)
+.|..+ +++||+. .+. .++.++ .+...+|+.+|.+ + ..+++.++..+-++.+.+.
T Consensus 71 ~~I~~a-~~~Pv~~D~d~G-g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~ 148 (285)
T TIGR02320 71 EFMFDV-TTKPIILDGDTG-GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQ 148 (285)
T ss_pred HHHHhh-cCCCEEEecCCC-CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhc
Confidence 333454 7999884 334 687765 4456899999999 1 2456777777777777653
Q ss_pred -CCcEEEEeC--------CHHHH----HHHhcccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccC
Q 015424 288 -GLTALVEVH--------DEREM----DRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQK 354 (407)
Q Consensus 288 -GL~aLVEVh--------t~eEl----erAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~ 354 (407)
+-+.++=.+ ..+|. ....++ |||.|-+-. ...+.+...++.+.++. .++
T Consensus 149 ~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eA-GAD~ifv~~--------------~~~~~~ei~~~~~~~~~-~~p-- 210 (285)
T TIGR02320 149 TTEDFMIIARVESLILGKGMEDALKRAEAYAEA-GADGIMIHS--------------RKKDPDEILEFARRFRN-HYP-- 210 (285)
T ss_pred cCCCeEEEEecccccccCCHHHHHHHHHHHHHc-CCCEEEecC--------------CCCCHHHHHHHHHHhhh-hCC--
Confidence 434433222 33333 334555 999998841 11234445555554321 111
Q ss_pred CceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015424 355 NIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 390 (407)
Q Consensus 355 ~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~ 390 (407)
+++++.-.|-...-.++.+.++|++-|..|..+++.
T Consensus 211 ~~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~~a 246 (285)
T TIGR02320 211 RTPLVIVPTSYYTTPTDEFRDAGISVVIYANHLLRA 246 (285)
T ss_pred CCCEEEecCCCCCCCHHHHHHcCCCEEEEhHHHHHH
Confidence 223333222112224778889999999999888754
No 477
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=91.05 E-value=1.6 Score=44.13 Aligned_cols=133 Identities=19% Similarity=0.221 Sum_probs=83.0
Q ss_pred CCCccHHHHHHhhhhcCCCceEEEEecccCCCcCCCCCCCCHHHHHHHHH-HcCCcEEEEEec--C-----C--cCCCCH
Q 015424 158 PPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYE-KGGAACLSILTD--E-----K--YFKGSF 227 (407)
Q Consensus 158 ~~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~ay~-~~GA~aISVLTd--~-----~--~F~Gs~ 227 (407)
..++.|.+++.+ .-..|+.=.|..|--. .+++... -||+. -|=+.. . + .|-|++
T Consensus 132 T~T~~~v~~~~~------~~~~i~~TRKT~Pg~R---------~l~k~AV~~GGG~-~HR~gLsd~iLikdNHi~~~G~i 195 (296)
T PRK09016 132 TEVRRYVELLAG------TNTQLLDTRKTLPGLR---------SALKYAVLCGGGA-NHRLGLSDAFLIKENHIIASGSI 195 (296)
T ss_pred HHHHHHHHHhcC------CCeEEEecCCCCCchh---------HHHHHHHHhcCcc-cccCCchhhhccCHHHHHHhCcH
Confidence 345778877732 2356777766667422 2333332 34432 222211 1 1 123443
Q ss_pred -HHHHHHHhcCCCCcE--EeccccCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHH
Q 015424 228 -ENLEAVRSAGVKCPL--LCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREM 301 (407)
Q Consensus 228 -edL~~Vr~a~v~lPV--L~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVh---t~eEl 301 (407)
+-++.+|+.....|| .+. +..|+.+|..+|||.|+|.- ++++++++.++..+. .+++|++ |++-+
T Consensus 196 ~~av~~~r~~~~~~kIeVEv~----sleea~ea~~~gaDiI~LDn--~s~e~~~~av~~~~~---~~~ieaSGGI~~~ni 266 (296)
T PRK09016 196 RQAVEKAFWLHPDVPVEVEVE----NLDELDQALKAGADIIMLDN--FTTEQMREAVKRTNG---RALLEVSGNVTLETL 266 (296)
T ss_pred HHHHHHHHHhCCCCCEEEEeC----CHHHHHHHHHcCCCEEEeCC--CChHHHHHHHHhhcC---CeEEEEECCCCHHHH
Confidence 556666653223343 343 46799999999999999974 566788888876542 7889998 78888
Q ss_pred HHHhcccCCcEEEee
Q 015424 302 DRVLGIEGIELIGIN 316 (407)
Q Consensus 302 erAl~l~Ga~iIGIN 316 (407)
...... |+|+|.+.
T Consensus 267 ~~yA~t-GVD~Is~g 280 (296)
T PRK09016 267 REFAET-GVDFISVG 280 (296)
T ss_pred HHHHhc-CCCEEEeC
Confidence 888886 99999984
No 478
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=90.96 E-value=4 Score=39.00 Aligned_cols=125 Identities=17% Similarity=0.144 Sum_probs=87.4
Q ss_pred eEEEEecccCCCcCCCCCCCCHHHHHHHHHHc-CCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHH
Q 015424 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKG-GAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYY 256 (407)
Q Consensus 178 ~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~-GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~e 256 (407)
.|.+|+. | .+..+..+.|+.+.++ |-..|=| .+-...++-++.+++. .++|..- .+.+..|.+.
T Consensus 53 ~v~~qv~------~--~~~e~~i~~a~~l~~~~~~~~iKI----P~T~~gl~ai~~L~~~--gi~v~~T-~V~s~~Qa~~ 117 (211)
T cd00956 53 PVSAQVV------S--TDAEGMVAEARKLASLGGNVVVKI----PVTEDGLKAIKKLSEE--GIKTNVT-AIFSAAQALL 117 (211)
T ss_pred CEEEEEE------e--CCHHHHHHHHHHHHHhCCCEEEEE----cCcHhHHHHHHHHHHc--CCceeeE-EecCHHHHHH
Confidence 4788883 1 1233566677777666 4322222 2222446666666554 4665543 3789999999
Q ss_pred HHHcCCCEEEEeccCCCH------HHHHHHHHHHHHcCCc---EEEEeCCHHHHHHHhcccCCcEEEeecc
Q 015424 257 ARTKGADAVLLIAAVLPD------LDIRYMTKICKLLGLT---ALVEVHDEREMDRVLGIEGIELIGINNR 318 (407)
Q Consensus 257 Ar~~GADaVLLiaaiL~~------~~L~~Li~~a~~LGL~---aLVEVht~eElerAl~l~Ga~iIGINnR 318 (407)
|..+||+.|--....+++ +.++++.++++..|+. .+.-+.|..|+..++.+ |++++-+...
T Consensus 118 Aa~AGA~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~~-Gad~vTv~~~ 187 (211)
T cd00956 118 AAKAGATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAALA-GADAITLPPD 187 (211)
T ss_pred HHHcCCCEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHHHc-CCCEEEeCHH
Confidence 999999998777766422 4567888889899998 78899999999999997 9999888543
No 479
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=90.94 E-value=1 Score=44.11 Aligned_cols=85 Identities=19% Similarity=0.179 Sum_probs=57.7
Q ss_pred EEEEeCCHHHHHHHhcccC-CcEEEeeccccccccccccccccccCchhHHHHhhcccc-cccccCCceEEEeeCCCCHH
Q 015424 291 ALVEVHDEREMDRVLGIEG-IELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERG-EIIRQKNIIVVGESGLFTPD 368 (407)
Q Consensus 291 aLVEVht~eElerAl~l~G-a~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~-~~i~~~~v~vVAESGI~t~e 368 (407)
+=+|+.+.+++..+... + +++|-..|-+. .+. +....+.+.... +..-++.+.+++.|||+ ++
T Consensus 187 idve~~~~~~~~~~~~~-~~~d~irlDs~~~---------~~~----~~~~~~~~~~~~~~~~~~~~~~i~~Sggi~-~~ 251 (281)
T cd00516 187 IDVEVDTLEEALEAAKA-GGADGIRLDSGSP---------EEL----DPAVLILKARAHLDGKGLPRVKIEASGGLD-EE 251 (281)
T ss_pred EEEEeCCHHHHHHHHhc-CCCCEEEeCCCCh---------HHH----HHHHHHHHHHHhhhhcCCCceEEEEeCCCC-HH
Confidence 45667788999888886 7 88888855433 211 112222211000 00112468999999996 99
Q ss_pred HHHHHHHcCCCEEEEcccccCC
Q 015424 369 DIAYVQEAGVKAVLVGESIVKQ 390 (407)
Q Consensus 369 D~~~l~~~GadaVLVGeaLmk~ 390 (407)
.+......|+|.+-||+.++..
T Consensus 252 ~i~~~~~~gvd~~gvG~~~~~~ 273 (281)
T cd00516 252 NIRAYAETGVDVFGVGTLLHSA 273 (281)
T ss_pred HHHHHHHcCCCEEEeCcccccC
Confidence 9999999999999999999886
No 480
>PRK14057 epimerase; Provisional
Probab=90.89 E-value=6.5 Score=39.01 Aligned_cols=115 Identities=12% Similarity=0.098 Sum_probs=76.8
Q ss_pred CCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCC--------CcEEeccccCCHHHHHHHHHcCCCEEEEe
Q 015424 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVK--------CPLLCKEFIVDAWQIYYARTKGADAVLLI 268 (407)
Q Consensus 197 ~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~--------lPVL~KDFIid~~QI~eAr~~GADaVLLi 268 (407)
.+|..+.+.|.++||+.|++-.|..- --...|..||+.+.. .+=|.=..-.+...+.... -=+|.||+.
T Consensus 85 ~~P~~~i~~~~~aGad~It~H~Ea~~--~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l-~~vD~VLvM 161 (254)
T PRK14057 85 ADQWTAAQACVKAGAHCITLQAEGDI--HLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPIL-SDVEVIQLL 161 (254)
T ss_pred CCHHHHHHHHHHhCCCEEEEeecccc--CHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHH-HhCCEEEEE
Confidence 37999999999999999999988421 124677888876431 2322222224445554443 459999997
Q ss_pred ccC--------CCH--HHHHHHHHHHHHcCCcEEEEeC---CHHHHHHHhcccCCcEEEe
Q 015424 269 AAV--------LPD--LDIRYMTKICKLLGLTALVEVH---DEREMDRVLGIEGIELIGI 315 (407)
Q Consensus 269 aai--------L~~--~~L~~Li~~a~~LGL~aLVEVh---t~eElerAl~l~Ga~iIGI 315 (407)
+-- ++. +.++++.++..+.|++.++||. +.+-+..+.++ ||+++-.
T Consensus 162 tV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~a-Gad~~V~ 220 (254)
T PRK14057 162 AVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQ-GIDRVVS 220 (254)
T ss_pred EECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHC-CCCEEEE
Confidence 652 211 2344455555567889889987 78888888887 9997655
No 481
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=90.85 E-value=9.2 Score=35.81 Aligned_cols=132 Identities=16% Similarity=0.099 Sum_probs=81.0
Q ss_pred cHHHHHHhhhhcCCCceEEEEecccCCCcCCCCCCCCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCc
Q 015424 162 DFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCP 241 (407)
Q Consensus 162 ~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lP 241 (407)
.|.+.|.... ..+..+..|+|...+ ....-...+++.+.+.|...--++ ...+.+.+..+|+...++|
T Consensus 84 tL~evl~~~~--~~~~~l~iEiK~~~~-----~~~~~~~~v~~~l~~~~~~~~v~v-----~Sf~~~~l~~~~~~~p~~~ 151 (220)
T cd08579 84 SLDEYLALAK--GLKQKLLIELKPHGH-----DSPDLVEKFVKLYKQNLIENQHQV-----HSLDYRVIEKVKKLDPKIK 151 (220)
T ss_pred CHHHHHHHhh--ccCCeEEEEECCCCC-----CCHHHHHHHHHHHHHcCCCcCeEE-----EeCCHHHHHHHHHHCCCCe
Confidence 4555554432 124679999997532 111123456677777775321121 2247888898886434454
Q ss_pred E--EeccccCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEE-EeCCHHHHHHHhcccCCcEEEee
Q 015424 242 L--LCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALV-EVHDEREMDRVLGIEGIELIGIN 316 (407)
Q Consensus 242 V--L~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLV-EVht~eElerAl~l~Ga~iIGIN 316 (407)
+ +....+ ......+++.+.+....++. ++++.+++.|+.+.+ -|++.+++.+++++ |++.|-.+
T Consensus 152 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~G~~v~~wtvn~~~~~~~~~~~-Gvd~i~TD 218 (220)
T cd08579 152 TGYILPFNI------GNLPKTNVDFYSIEYSTLNK----EFIRQAHQNGKKVYVWTVNDPDDMQRYLAM-GVDGIITD 218 (220)
T ss_pred EEEEEeccc------CcccccCceEEeeehhhcCH----HHHHHHHHCCCEEEEEcCCCHHHHHHHHHc-CCCEEeCC
Confidence 4 222211 11345688888776555554 477889999998744 46789999999997 99887654
No 482
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.77 E-value=5.4 Score=38.33 Aligned_cols=121 Identities=17% Similarity=0.188 Sum_probs=76.2
Q ss_pred HHHHhcCCCCcEEeccccCCHHHHHHH-HHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEE---eCCHHHHHHHhc
Q 015424 231 EAVRSAGVKCPLLCKEFIVDAWQIYYA-RTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVE---VHDEREMDRVLG 306 (407)
Q Consensus 231 ~~Vr~a~v~lPVL~KDFIid~~QI~eA-r~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVE---Vht~eElerAl~ 306 (407)
..+.+. -=+||++.+=.-+-..+.++ ...|.+.|=+- .-++.-++.+-+..++++ ++++= |-|.++++.+.+
T Consensus 10 ~~l~~~-~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEit--l~~~~~~~~I~~l~~~~p-~~~IGAGTVl~~~~a~~a~~ 85 (212)
T PRK05718 10 EILRAG-PVVPVIVINKLEDAVPLAKALVAGGLPVLEVT--LRTPAALEAIRLIAKEVP-EALIGAGTVLNPEQLAQAIE 85 (212)
T ss_pred HHHHHC-CEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEe--cCCccHHHHHHHHHHHCC-CCEEEEeeccCHHHHHHHHH
Confidence 455554 34899997754444566665 45579977665 334434444444444554 44443 447899999999
Q ss_pred ccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEE
Q 015424 307 IEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLV 383 (407)
Q Consensus 307 l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLV 383 (407)
+ ||+++-.-+- |.+......+ .-+..--|+.||.++..+.++|++.|=+
T Consensus 86 a-GA~FivsP~~----------------~~~vi~~a~~-----------~~i~~iPG~~TptEi~~a~~~Ga~~vKl 134 (212)
T PRK05718 86 A-GAQFIVSPGL----------------TPPLLKAAQE-----------GPIPLIPGVSTPSELMLGMELGLRTFKF 134 (212)
T ss_pred c-CCCEEECCCC----------------CHHHHHHHHH-----------cCCCEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 7 9998766322 2222222211 1233456899999999999999999877
No 483
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=90.68 E-value=8.5 Score=42.47 Aligned_cols=120 Identities=18% Similarity=0.165 Sum_probs=77.6
Q ss_pred CCCHHHHHHHHHHcCCcEEEEEe-------cCCcCCCCHHHHHHHHhcCCCCcE--Eecc-----ccCC-----HHHHHH
Q 015424 196 DFDPVEIARSYEKGGAACLSILT-------DEKYFKGSFENLEAVRSAGVKCPL--LCKE-----FIVD-----AWQIYY 256 (407)
Q Consensus 196 ~~dp~~iA~ay~~~GA~aISVLT-------d~~~F~Gs~edL~~Vr~a~v~lPV--L~KD-----FIid-----~~QI~e 256 (407)
..+...+|..+.+.|...|=+.. -+..-...++.|+.+|+...+.|+ |+.. +-.. ...|..
T Consensus 26 ~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~ 105 (593)
T PRK14040 26 LDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVER 105 (593)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHHH
Confidence 34778899999999988887721 000111346788888875345664 3332 1121 234778
Q ss_pred HHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEE---E----EeCCHHHH----HHHhcccCCcEEEee
Q 015424 257 ARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTAL---V----EVHDEREM----DRVLGIEGIELIGIN 316 (407)
Q Consensus 257 Ar~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aL---V----EVht~eEl----erAl~l~Ga~iIGIN 316 (407)
|..+|+|.+-+-.++-+-..+...++.+++.|+.+- . ..||.+.+ +.+.++ |++.|.|-
T Consensus 106 a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~-Gad~i~i~ 175 (593)
T PRK14040 106 AVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDM-GVDSLCIK 175 (593)
T ss_pred HHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHc-CCCEEEEC
Confidence 999999998887554445678889999999999752 2 23444433 344555 99998883
No 484
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=90.62 E-value=2.8 Score=39.88 Aligned_cols=101 Identities=15% Similarity=0.187 Sum_probs=68.6
Q ss_pred HHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCCCEEEEec-cCCCHHHHHH
Q 015424 201 EIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA-AVLPDLDIRY 279 (407)
Q Consensus 201 ~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLia-aiL~~~~L~~ 279 (407)
+.++.+.+.||..|+. .+...++...+.. .+.|++.. ..++.|+.+|..+|||+|-+-. ..++.+.++.
T Consensus 74 ~~~~~a~~aGA~fivs-------p~~~~~v~~~~~~-~~~~~~~G--~~t~~E~~~A~~~Gad~vk~Fpa~~~G~~~l~~ 143 (206)
T PRK09140 74 EQVDRLADAGGRLIVT-------PNTDPEVIRRAVA-LGMVVMPG--VATPTEAFAALRAGAQALKLFPASQLGPAGIKA 143 (206)
T ss_pred HHHHHHHHcCCCEEEC-------CCCCHHHHHHHHH-CCCcEEcc--cCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHH
Confidence 4667788889999886 2344455555543 57787766 6788999999999999998733 3455444444
Q ss_pred HHHHHHHc--CCcEEEEeC--CHHHHHHHhcccCCcEEEee
Q 015424 280 MTKICKLL--GLTALVEVH--DEREMDRVLGIEGIELIGIN 316 (407)
Q Consensus 280 Li~~a~~L--GL~aLVEVh--t~eElerAl~l~Ga~iIGIN 316 (407)
+.. -+ .+.+ +=+- |.+.+...++. |++.+++-
T Consensus 144 l~~---~~~~~ipv-vaiGGI~~~n~~~~~~a-Ga~~vav~ 179 (206)
T PRK09140 144 LRA---VLPPDVPV-FAVGGVTPENLAPYLAA-GAAGFGLG 179 (206)
T ss_pred HHh---hcCCCCeE-EEECCCCHHHHHHHHHC-CCeEEEEe
Confidence 333 33 2333 3332 77888888997 99999984
No 485
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=90.60 E-value=0.77 Score=46.34 Aligned_cols=79 Identities=23% Similarity=0.244 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHcCCcEEEEEe----cC---CcCCC-CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcC-CCEEEEe
Q 015424 198 DPVEIARSYEKGGAACLSILT----DE---KYFKG-SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLI 268 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLT----d~---~~F~G-s~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~G-ADaVLLi 268 (407)
+..++++.+++.|.+.|+|-. .. .+..+ ..+.++.+|+. +++||+.-+.|.++.+..++...| ||.|-+.
T Consensus 242 e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~-~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~g 320 (336)
T cd02932 242 DSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQE-AGIPVIAVGLITDPEQAEAILESGRADLVALG 320 (336)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHcCCCCeehhh
Confidence 456788899999999999742 11 11122 24666778886 899999999999999999999988 9999998
Q ss_pred ccCCCHHHH
Q 015424 269 AAVLPDLDI 277 (407)
Q Consensus 269 aaiL~~~~L 277 (407)
-.++.+.++
T Consensus 321 R~~i~dP~~ 329 (336)
T cd02932 321 RELLRNPYW 329 (336)
T ss_pred HHHHhCccH
Confidence 888866655
No 486
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=90.55 E-value=19 Score=35.69 Aligned_cols=163 Identities=15% Similarity=0.106 Sum_probs=91.6
Q ss_pred HHHHHHHHHcC-CcEEEEE-ecCCcCCCCHHHHHHH----Hhc-CCCCcEEeccccCCHH----HHHHHHHcCCCEEEEe
Q 015424 200 VEIARSYEKGG-AACLSIL-TDEKYFKGSFENLEAV----RSA-GVKCPLLCKEFIVDAW----QIYYARTKGADAVLLI 268 (407)
Q Consensus 200 ~~iA~ay~~~G-A~aISVL-Td~~~F~Gs~edL~~V----r~a-~v~lPVL~KDFIid~~----QI~eAr~~GADaVLLi 268 (407)
.++.+.+.+.| +++|-++ |-..++.=+.+.-..+ ++. .-++||+..=.-.+.. ....|..+|||+|+++
T Consensus 24 ~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~ 103 (290)
T TIGR00683 24 RQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAV 103 (290)
T ss_pred HHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 34456667888 9999887 1112222233332222 221 1368998653222333 2334678999999998
Q ss_pred ccCC---CHHHHHH-HHHHHHHc-CCcEEEE-----eC---CHHHHHHHhcccCCcEEEeeccccccccccccccccccC
Q 015424 269 AAVL---PDLDIRY-MTKICKLL-GLTALVE-----VH---DEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVD 335 (407)
Q Consensus 269 aaiL---~~~~L~~-Li~~a~~L-GL~aLVE-----Vh---t~eElerAl~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vD 335 (407)
.-.. +++++.. +.+.+... ++..++= .+ +.+.+.+..+. ..++|| ++-.-|
T Consensus 104 ~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~L~~~--pnv~gi--------------K~s~~d 167 (290)
T TIGR00683 104 TPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGELYKN--PKVLGV--------------KFTAGD 167 (290)
T ss_pred CCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHHHHHhcC--CCEEEE--------------EeCCCC
Confidence 7643 4444443 44444544 5666432 11 45556665553 579999 444457
Q ss_pred chhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccccC
Q 015424 336 NSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK 389 (407)
Q Consensus 336 l~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk 389 (407)
+....++.... .+.. |. +|-. +.+.....+|++|.+-|.+=+-
T Consensus 168 ~~~~~~~~~~~-------~~~~-v~-~G~d--~~~~~~l~~G~~G~i~~~~n~~ 210 (290)
T TIGR00683 168 FYLLERLKKAY-------PNHL-IW-AGFD--EMMLPAASLGVDGAIGSTFNVN 210 (290)
T ss_pred HHHHHHHHHhC-------CCCE-EE-ECch--HHHHHHHHCCCCEEEecHHHhC
Confidence 77777776531 2433 33 5552 3345556789999987755443
No 487
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=90.49 E-value=4.6 Score=39.51 Aligned_cols=159 Identities=20% Similarity=0.288 Sum_probs=87.3
Q ss_pred HHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhc--CCCCcEEec--cc--cCCH-----HHHHHHHHcCCCEEEE
Q 015424 199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSA--GVKCPLLCK--EF--IVDA-----WQIYYARTKGADAVLL 267 (407)
Q Consensus 199 p~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a--~v~lPVL~K--DF--Iid~-----~QI~eAr~~GADaVLL 267 (407)
...++....+.|..++-|. +.++..+++. +.....+|- +| .-++ +...+|...|||=|-+
T Consensus 26 I~~l~~eA~~~~f~avCV~---------P~~V~~A~~~l~g~~~~~v~tVigFP~G~~~t~~K~~Ea~~ai~~GAdEiDm 96 (228)
T COG0274 26 IARLCAEAKEYGFAAVCVN---------PSYVPLAKEALKGSTVVRVCTVIGFPLGANTTAVKAAEAREAIENGADEIDM 96 (228)
T ss_pred HHHHHHHHHhhCceEEEEC---------cchHHHHHHHhccCCCeEEEEecCCCCCCChHHHHHHHHHHHHHcCCCeeee
Confidence 3344445566676666662 5566666653 111222331 22 2222 2344567889987765
Q ss_pred ecc---CCCH------HHHHHHHHHHHH-cCCcEEEEeC--CHHHHHHH----hcccCCcEEEeeccccccccccccccc
Q 015424 268 IAA---VLPD------LDIRYMTKICKL-LGLTALVEVH--DEREMDRV----LGIEGIELIGINNRNLAISIFSYRTET 331 (407)
Q Consensus 268 iaa---iL~~------~~L~~Li~~a~~-LGL~aLVEVh--t~eElerA----l~l~Ga~iIGINnRdL~~~~~~~t~~T 331 (407)
..- +.+. .++....+.|.. .=+.+++|.- +.+|..+| .++ ||++|=.. ||+.....|
T Consensus 97 Vinig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~~~A~~i~~~a-GAdFVKTS------TGf~~~gAT 169 (228)
T COG0274 97 VINIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEEKRKACEIAIEA-GADFVKTS------TGFSAGGAT 169 (228)
T ss_pred eeeHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHHHHHHHHHHHHh-CCCEEEcC------CCCCCCCCC
Confidence 433 2322 344455555555 3577899987 44444433 343 88887662 334333333
Q ss_pred cccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcc
Q 015424 332 FEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGE 385 (407)
Q Consensus 332 f~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGe 385 (407)
.+ |. +|+... ....+-+=+.|||+|.+|+..+.++|+. -+|.
T Consensus 170 ~e-dv----~lM~~~-----vg~~vgvKaSGGIrt~eda~~~i~aga~--RiGt 211 (228)
T COG0274 170 VE-DV----KLMKET-----VGGRVGVKASGGIRTAEDAKAMIEAGAT--RIGT 211 (228)
T ss_pred HH-HH----HHHHHH-----hccCceeeccCCcCCHHHHHHHHHHhHH--Hhcc
Confidence 21 22 232221 1245677799999999999999999944 4454
No 488
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=90.45 E-value=5.9 Score=38.10 Aligned_cols=107 Identities=13% Similarity=0.091 Sum_probs=70.3
Q ss_pred HHHHHHHHcC-CCEEEEeccCCCHHHHHH----HHHHHHHcCCcEEEEeCCHHHHHHHhcccCCcEEEeecccccccccc
Q 015424 252 WQIYYARTKG-ADAVLLIAAVLPDLDIRY----MTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFS 326 (407)
Q Consensus 252 ~QI~eAr~~G-ADaVLLiaaiL~~~~L~~----Li~~a~~LGL~aLVEVht~eElerAl~l~Ga~iIGINnRdL~~~~~~ 326 (407)
.++.++...| ++.|.|-..-++..++.. +.+.|+..|...+|. |. .+.|+.+ |++=|=+..+|+
T Consensus 30 ~~l~~al~~G~v~~vQlR~K~l~~~~~~~~a~~l~~l~~~~gv~liIN--d~--~dlA~~~-~adGVHLg~~d~------ 98 (221)
T PRK06512 30 KLLRAALQGGDVASVILPQYGLDEATFQKQAEKLVPVIQEAGAAALIA--GD--SRIAGRV-KADGLHIEGNLA------ 98 (221)
T ss_pred HHHHHHHcCCCccEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEe--CH--HHHHHHh-CCCEEEECcccc------
Confidence 4677788889 699999988888877644 445566678777755 44 4556665 666333332232
Q ss_pred ccccccccCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHHHcCCCEEEEcccc
Q 015424 327 YRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESI 387 (407)
Q Consensus 327 ~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaL 387 (407)
++....++. ..+ .+|.-|..++.+++....+.|+|-+.+|--.
T Consensus 99 --------~~~~~r~~~---------~~~-~iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv~ 141 (221)
T PRK06512 99 --------ALAEAIEKH---------APK-MIVGFGNLRDRHGAMEIGELRPDYLFFGKLG 141 (221)
T ss_pred --------CHHHHHHhc---------CCC-CEEEecCCCCHHHHHHhhhcCCCEEEECCCC
Confidence 222222221 122 4566666788999999889999999999864
No 489
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=90.30 E-value=0.91 Score=45.90 Aligned_cols=79 Identities=19% Similarity=0.267 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHcCCcEEEEEec---CCcC-----------CCC-HHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcC-
Q 015424 198 DPVEIARSYEKGGAACLSILTD---EKYF-----------KGS-FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG- 261 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd---~~~F-----------~Gs-~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~G- 261 (407)
+..++++.+++.|++.|+|-.- +.++ .|- .+..+.+|+. +++||+.-.-|.++.+..++.+.|
T Consensus 237 ea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~-v~iPVi~~G~i~t~~~a~~~l~~g~ 315 (338)
T cd04733 237 DALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKV-TKTPLMVTGGFRTRAAMEQALASGA 315 (338)
T ss_pred HHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHH-cCCCEEEeCCCCCHHHHHHHHHcCC
Confidence 5568899999999999997321 1111 111 3455678887 899999999899999999998876
Q ss_pred CCEEEEeccCCCHHHH
Q 015424 262 ADAVLLIAAVLPDLDI 277 (407)
Q Consensus 262 ADaVLLiaaiL~~~~L 277 (407)
||.|.+.=.++.+.++
T Consensus 316 aD~V~lgR~~iadP~~ 331 (338)
T cd04733 316 VDGIGLARPLALEPDL 331 (338)
T ss_pred CCeeeeChHhhhCccH
Confidence 8999998778766655
No 490
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=90.25 E-value=1.6 Score=39.84 Aligned_cols=86 Identities=20% Similarity=0.300 Sum_probs=55.5
Q ss_pred HHHHHHHcCCcEEEEe--CCHHHHHHHh-cccCCcEEEeeccccccccccccccccccCchhHHHHhhcccccccccCCc
Q 015424 280 MTKICKLLGLTALVEV--HDEREMDRVL-GIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNI 356 (407)
Q Consensus 280 Li~~a~~LGL~aLVEV--ht~eElerAl-~l~Ga~iIGINnRdL~~~~~~~t~~Tf~vDl~~t~~L~~~~~~~~i~~~~v 356 (407)
+-....+.|++++.-- .+.+|+-++. + +.++.||+...+- .- .....++.+.++.... .+
T Consensus 32 ia~~l~d~GfeVi~~g~~~tp~e~v~aA~~-~dv~vIgvSsl~g---------~h----~~l~~~lve~lre~G~--~~- 94 (143)
T COG2185 32 IARALADAGFEVINLGLFQTPEEAVRAAVE-EDVDVIGVSSLDG---------GH----LTLVPGLVEALREAGV--ED- 94 (143)
T ss_pred HHHHHHhCCceEEecCCcCCHHHHHHHHHh-cCCCEEEEEeccc---------hH----HHHHHHHHHHHHHhCC--cc-
Confidence 4444556788875543 3677775554 5 5899999976544 11 1123344433332222 33
Q ss_pred eEEEeeCCCCHHHHHHHHHcCCCEEE
Q 015424 357 IVVGESGLFTPDDIAYVQEAGVKAVL 382 (407)
Q Consensus 357 ~vVAESGI~t~eD~~~l~~~GadaVL 382 (407)
+.|..||+-.++|...++++|+++++
T Consensus 95 i~v~~GGvip~~d~~~l~~~G~~~if 120 (143)
T COG2185 95 ILVVVGGVIPPGDYQELKEMGVDRIF 120 (143)
T ss_pred eEEeecCccCchhHHHHHHhCcceee
Confidence 45788999999999999999999985
No 491
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=90.18 E-value=2 Score=46.90 Aligned_cols=127 Identities=18% Similarity=0.160 Sum_probs=75.2
Q ss_pred HHHHHcCC--CEEEEeccCCCHHHHHHHHHHHHHcCCcEEEE-eCCHHHHHHHhccc--CC--c-EEEeecccccccccc
Q 015424 255 YYARTKGA--DAVLLIAAVLPDLDIRYMTKICKLLGLTALVE-VHDEREMDRVLGIE--GI--E-LIGINNRNLAISIFS 326 (407)
Q Consensus 255 ~eAr~~GA--DaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVE-Vht~eElerAl~l~--Ga--~-iIGINnRdL~~~~~~ 326 (407)
.+||+.|+ |+|.+-+-+.+-++--+|++....-|+.-++= =.+.+.+..++.+. .+ . ++-+..- . .|.+
T Consensus 115 ~kara~G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~egG-r--aGGH 191 (717)
T COG4981 115 QKARASGAPIDGVVISAGIPSLEEAVELIEELGDDGFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQWEGG-R--AGGH 191 (717)
T ss_pred HHHHhcCCCcceEEEecCCCcHHHHHHHHHHHhhcCceeEEecCCcHHHHHHHHHHHhcCCCCceEEEEecC-c--cCCc
Confidence 56888886 78888777876655555555444448775543 24777776666552 11 1 3333211 1 0111
Q ss_pred ccccccc-cCchhHHHHhhcccccccccCCceEEEeeCCCCHHHHHHHH------Hc-----CCCEEEEcccccCCCC
Q 015424 327 YRTETFE-VDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQ------EA-----GVKAVLVGESIVKQDD 392 (407)
Q Consensus 327 ~t~~Tf~-vDl~~t~~L~~~~~~~~i~~~~v~vVAESGI~t~eD~~~l~------~~-----GadaVLVGeaLmk~~d 392 (407)
.+=+++. +=+.+..+|.. -++++++..|||.||+|..... .+ -+||+|||++.|-...
T Consensus 192 HSweDld~llL~tYs~lR~--------~~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMatKE 261 (717)
T COG4981 192 HSWEDLDDLLLATYSELRS--------RDNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMATKE 261 (717)
T ss_pred cchhhcccHHHHHHHHHhc--------CCCEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHhhhh
Confidence 1111111 22334444433 2689999999999999987643 23 4799999999996544
No 492
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=90.17 E-value=3 Score=40.92 Aligned_cols=67 Identities=18% Similarity=0.028 Sum_probs=52.1
Q ss_pred cCCHHHHHHHHHcCCCEEEEecc--CCCHHHHHHHHHHHHHcCCcEEEEeC--CHHHHHHHhcccCCcEEEe
Q 015424 248 IVDAWQIYYARTKGADAVLLIAA--VLPDLDIRYMTKICKLLGLTALVEVH--DEREMDRVLGIEGIELIGI 315 (407)
Q Consensus 248 Iid~~QI~eAr~~GADaVLLiaa--iL~~~~L~~Li~~a~~LGL~aLVEVh--t~eElerAl~l~Ga~iIGI 315 (407)
+-+|.-+.....+|-|.|++... .++.+++..++..++..|+.+||=|. +...+.+++++ |++=|-+
T Consensus 20 ~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r~LD~-Ga~gIiv 90 (249)
T TIGR03239 20 LGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNEPVIIKRLLDI-GFYNFLI 90 (249)
T ss_pred CCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHHhcC-CCCEEEe
Confidence 34454444466789999999876 67888899999988889999998875 77778999997 8875543
No 493
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=90.00 E-value=3.1 Score=45.27 Aligned_cols=94 Identities=18% Similarity=0.147 Sum_probs=69.0
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEE---ecCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHH-cCCCEEEEecc
Q 015424 195 EDFDPVEIARSYEKGGAACLSIL---TDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYART-KGADAVLLIAA 270 (407)
Q Consensus 195 ~~~dp~~iA~ay~~~GA~aISVL---Td~~~F~Gs~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~-~GADaVLLiaa 270 (407)
.+.++.++|+.+++.||..|=+. .|..-.+=+++-++.++++ +++||+.-..+-.+..+.++.. .|||+++- ++
T Consensus 436 ~~~~~~~~~~~~~~~Gageil~t~id~DGt~~G~d~~l~~~v~~~-~~ipviasGG~g~~~d~~~~~~~~~~~a~~a-a~ 513 (538)
T PLN02617 436 RPIGAYELAKAVEELGAGEILLNCIDCDGQGKGFDIELVKLVSDA-VTIPVIASSGAGTPEHFSDVFSKTNASAALA-AG 513 (538)
T ss_pred CCCCHHHHHHHHHhcCCCEEEEeeccccccccCcCHHHHHHHHhh-CCCCEEEECCCCCHHHHHHHHhcCCccEEEE-Ee
Confidence 47899999999999999887553 2333333357778888887 8999999999999999988865 68999766 45
Q ss_pred CC--CHHHHHHHHHHHHHcCCc
Q 015424 271 VL--PDLDIRYMTKICKLLGLT 290 (407)
Q Consensus 271 iL--~~~~L~~Li~~a~~LGL~ 290 (407)
++ ..-.+.++-++.++-|+.
T Consensus 514 ~fh~~~~~~~~~k~~l~~~gi~ 535 (538)
T PLN02617 514 IFHRKEVPISSVKEHLLEEGIE 535 (538)
T ss_pred eeccCCCCHHHHHHHHHHCCCc
Confidence 54 223455566666666764
No 494
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=89.91 E-value=7.9 Score=37.78 Aligned_cols=115 Identities=10% Similarity=-0.008 Sum_probs=76.6
Q ss_pred CCHHHHHHHHHHcCCcEEEEEecCCcCCCCHHHHHHHHhcCCC-CcEEeccccCCHHHHHHHHHcCCCEEEEeccC----
Q 015424 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVK-CPLLCKEFIVDAWQIYYARTKGADAVLLIAAV---- 271 (407)
Q Consensus 197 ~dp~~iA~ay~~~GA~aISVLTd~~~F~Gs~edL~~Vr~a~v~-lPVL~KDFIid~~QI~eAr~~GADaVLLiaai---- 271 (407)
.+|..+.+.|.++||+.|++-.|.. ..-.+.|..+|+.+.. .+=|.=..-++..++.... --+|.||+.+--
T Consensus 78 ~~P~~~i~~~~~aGad~It~H~Ea~--~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l-~~vD~VLiMtV~PGfg 154 (228)
T PRK08091 78 RDQFEVAKACVAAGADIVTLQVEQT--HDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYL-DQIDLIQILTLDPRTG 154 (228)
T ss_pred CCHHHHHHHHHHhCCCEEEEcccCc--ccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHH-hhcCEEEEEEECCCCC
Confidence 3899999999999999999988743 1124677888886320 1222212224555555443 469999997652
Q ss_pred ----CCH--HHHHHHHHHHHHcCCcEEEEeC---CHHHHHHHhcccCCcEEEe
Q 015424 272 ----LPD--LDIRYMTKICKLLGLTALVEVH---DEREMDRVLGIEGIELIGI 315 (407)
Q Consensus 272 ----L~~--~~L~~Li~~a~~LGL~aLVEVh---t~eElerAl~l~Ga~iIGI 315 (407)
++. +.++++.++..+.|+...+||. +.+-+.++.++ ||+++-.
T Consensus 155 GQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~a-GaD~~V~ 206 (228)
T PRK08091 155 TKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTLELASYLKQH-QIDWVVS 206 (228)
T ss_pred CccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHC-CCCEEEE
Confidence 211 2344555555566888888887 78889898997 9997654
No 495
>PLN02979 glycolate oxidase
Probab=89.81 E-value=2.4 Score=44.10 Aligned_cols=73 Identities=22% Similarity=0.254 Sum_probs=54.0
Q ss_pred HHHHHHHHHcCCcEEEEEecCC----cCCCCHHHHHHHHhc-CCCCcEEeccccCCHHHHHHHHHcCCCEEEEeccCC
Q 015424 200 VEIARSYEKGGAACLSILTDEK----YFKGSFENLEAVRSA-GVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (407)
Q Consensus 200 ~~iA~ay~~~GA~aISVLTd~~----~F~Gs~edL~~Vr~a-~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (407)
.+-|+...+.|+++|-|-.=.. +.-.+.+-|.+++++ ..++||+.-..|.+..+|..|.++|||+|.+.-.+|
T Consensus 234 ~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp~L 311 (366)
T PLN02979 234 GEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 311 (366)
T ss_pred HHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence 3567777888999997742111 011235677777764 135999999999999999999999999999986555
No 496
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=89.72 E-value=2.6 Score=42.56 Aligned_cols=134 Identities=16% Similarity=0.181 Sum_probs=85.3
Q ss_pred CCCccHHHHHHhhhhcCCCceEEEEecccCCCcCCCCCCCCHHHHHHHH-HHcCCc--------EEEEEecCCcCCCCH-
Q 015424 158 PPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSY-EKGGAA--------CLSILTDEKYFKGSF- 227 (407)
Q Consensus 158 ~~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~ay-~~~GA~--------aISVLTd~~~F~Gs~- 227 (407)
..++.|.+++.+ .-..|+.=.|..|-- | .+++.. ..||+. +|-+-..=-.|-|++
T Consensus 120 T~T~~~V~~~~~------~~~~i~~TRKT~PG~---R------~l~k~AV~~GGG~~HR~gLsD~iLIkdNHi~~~g~i~ 184 (290)
T PRK06559 120 SMTAAYVEALGD------DRIKVFDTRKTTPNL---R------LFEKYAVRVGGGYNHRFNLSDAIMLKDNHIAAVGSVQ 184 (290)
T ss_pred HHHHHHHHHhcC------CCeEEEeecCCCCcc---h------HHHHHHHHhcCCcccCCCCcceEEEcHHHHHhhccHH
Confidence 345778877732 235777777777742 1 233333 344443 222221111334444
Q ss_pred HHHHHHHhcCC-CCcE--EeccccCCHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHHHHHHcCCcEEEEeC---CHHHH
Q 015424 228 ENLEAVRSAGV-KCPL--LCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREM 301 (407)
Q Consensus 228 edL~~Vr~a~v-~lPV--L~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEVh---t~eEl 301 (407)
+-++.+|+... ..+| .+. +..|+.+|..+|||.|+|.- ++++++++.++..+. .+++|++ |.+-+
T Consensus 185 ~av~~~r~~~~~~~kIeVEv~----tleea~~a~~agaDiImLDn--mspe~l~~av~~~~~---~~~leaSGGI~~~ni 255 (290)
T PRK06559 185 KAIAQARAYAPFVKMVEVEVE----SLAAAEEAAAAGADIIMLDN--MSLEQIEQAITLIAG---RSRIECSGNIDMTTI 255 (290)
T ss_pred HHHHHHHHhCCCCCeEEEECC----CHHHHHHHHHcCCCEEEECC--CCHHHHHHHHHHhcC---ceEEEEECCCCHHHH
Confidence 56777776411 1333 343 46899999999999999964 677888888876553 6899998 88888
Q ss_pred HHHhcccCCcEEEee
Q 015424 302 DRVLGIEGIELIGIN 316 (407)
Q Consensus 302 erAl~l~Ga~iIGIN 316 (407)
...... |+|+|.+.
T Consensus 256 ~~yA~t-GVD~Is~g 269 (290)
T PRK06559 256 SRFRGL-AIDYVSSG 269 (290)
T ss_pred HHHHhc-CCCEEEeC
Confidence 888886 99999884
No 497
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=89.58 E-value=1.6 Score=41.04 Aligned_cols=112 Identities=21% Similarity=0.204 Sum_probs=72.5
Q ss_pred HHHHHHHHcCCcEEEEEecCCcCC-C----CHHHHHHHHhcCCCCcE---EeccccCCHHHHHH----HHHcCCCEEEEe
Q 015424 201 EIARSYEKGGAACLSILTDEKYFK-G----SFENLEAVRSAGVKCPL---LCKEFIVDAWQIYY----ARTKGADAVLLI 268 (407)
Q Consensus 201 ~iA~ay~~~GA~aISVLTd~~~F~-G----s~edL~~Vr~a~v~lPV---L~KDFIid~~QI~e----Ar~~GADaVLLi 268 (407)
.-++...+.||++|.+.-...++. | ..++|..+++....+|+ +-... .++.+|.. +.++|||.|=..
T Consensus 73 ~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~-l~~~~i~~a~ria~e~GaD~IKTs 151 (203)
T cd00959 73 AEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGL-LTDEEIIKACEIAIEAGADFIKTS 151 (203)
T ss_pred HHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCC-CCHHHHHHHHHHHHHhCCCEEEcC
Confidence 335666778999999998877663 4 34567777764224664 22222 24445433 578999998876
Q ss_pred ccCC----CHHHHHHHHHHHHHcCCcEEE--EeCCHHHHHHHhcccCCcEEEe
Q 015424 269 AAVL----PDLDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGI 315 (407)
Q Consensus 269 aaiL----~~~~L~~Li~~a~~LGL~aLV--EVht~eElerAl~l~Ga~iIGI 315 (407)
+-.. +.++.+.|.+.++ ..+.+.+ -++|.+++...+.+ |++-||.
T Consensus 152 TG~~~~~at~~~v~~~~~~~~-~~v~ik~aGGikt~~~~l~~~~~-g~~riG~ 202 (203)
T cd00959 152 TGFGPGGATVEDVKLMKEAVG-GRVGVKAAGGIRTLEDALAMIEA-GATRIGT 202 (203)
T ss_pred CCCCCCCCCHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHh-ChhhccC
Confidence 4333 3345555666655 3344433 37899999999998 9988885
No 498
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=89.57 E-value=6.4 Score=41.31 Aligned_cols=128 Identities=23% Similarity=0.162 Sum_probs=85.5
Q ss_pred CCceEEEEecccCCCc--CCCCC-----CCCHHHHHHHHH-HcCCcEEEEE---ecCCcCCCCHHHHH-HHH---hcCCC
Q 015424 175 GLPALIAEVKKASPSR--GILRE-----DFDPVEIARSYE-KGGAACLSIL---TDEKYFKGSFENLE-AVR---SAGVK 239 (407)
Q Consensus 175 ~~~~vIAEvKraSPSk--G~i~~-----~~dp~~iA~ay~-~~GA~aISVL---Td~~~F~Gs~edL~-~Vr---~a~v~ 239 (407)
+++.|-.||--..|+. ..++. ..||++.|+.+. ..||+.|.+- +||.-+.-|++... .++ ++ ++
T Consensus 110 npp~ia~dV~D~~~~~~~~~i~~~~~dV~~dP~~wak~~V~~~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~a-v~ 188 (389)
T TIGR00381 110 NPPVVTFDVFDIPMPGLPKPIRMHFEDVMEDPAEWARKCVKEFGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQA-VD 188 (389)
T ss_pred CCCeEEEEEecCCccccHHHHHHHHHHHhcCHHHHHHHHHHHhCCCEEEEEecCCCccccccCHHHHHHHHHHHHHh-CC
Confidence 4566777776664443 12211 348999999996 8999999886 45554445555333 333 33 78
Q ss_pred CcEEe---ccccCCHHHHHHHHHcCCC-EEEEeccCCCHHHHHHHHHHHHHcCCcEEEEe-CCHHHHHHH
Q 015424 240 CPLLC---KEFIVDAWQIYYARTKGAD-AVLLIAAVLPDLDIRYMTKICKLLGLTALVEV-HDEREMDRV 304 (407)
Q Consensus 240 lPVL~---KDFIid~~QI~eAr~~GAD-aVLLiaaiL~~~~L~~Li~~a~~LGL~aLVEV-ht~eElerA 304 (407)
+|++- ++---|+.-+..+...-.+ ..||.++-+++ .++++.+.|+++|.-+++.. .+...+...
T Consensus 189 vPLIL~gsg~~~kD~eVLeaaLe~~~G~kpLL~SAt~e~-Ny~~ia~lAk~yg~~Vvv~s~~Din~ak~L 257 (389)
T TIGR00381 189 VPIVIGGSGNPEKDPLVLEKAAEVAEGERCLLASANLDL-DYEKIANAAKKYGHVVLSWTIMDINMQKTL 257 (389)
T ss_pred CCEEEeCCCCCcCCHHHHHHHHHHhCCCCcEEEecCchh-hHHHHHHHHHHhCCeEEEEcCCcHHHHHHH
Confidence 99862 3334567777777665555 68887777764 78999999999999998888 565555443
No 499
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=89.49 E-value=9.2 Score=37.39 Aligned_cols=68 Identities=15% Similarity=0.086 Sum_probs=54.4
Q ss_pred ccCCHHHHHHHHHcCCCEEEEecc--CCCHHHHHHHHHHHHHcCCcEEEEe--CCHHHHHHHhcccCCcEEEe
Q 015424 247 FIVDAWQIYYARTKGADAVLLIAA--VLPDLDIRYMTKICKLLGLTALVEV--HDEREMDRVLGIEGIELIGI 315 (407)
Q Consensus 247 FIid~~QI~eAr~~GADaVLLiaa--iL~~~~L~~Li~~a~~LGL~aLVEV--ht~eElerAl~l~Ga~iIGI 315 (407)
.+-+|.-+..+..+|.|.|.+... .++..++..++..++..|+++||=| ++...+.++++. |++-|-+
T Consensus 19 ~~~~p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~~i~~~Ld~-Ga~gIiv 90 (249)
T TIGR02311 19 GLADPYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGDPVLIKQLLDI-GAQTLLV 90 (249)
T ss_pred eCCCcHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCCHHHHHHHhCC-CCCEEEe
Confidence 345666666688899999999875 5677788888888878899999998 577789999997 9876655
No 500
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=89.48 E-value=1.5 Score=45.35 Aligned_cols=79 Identities=22% Similarity=0.316 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHcCCcEEEEEec---------CCcCC--CC-HHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcC-CCE
Q 015424 198 DPVEIARSYEKGGAACLSILTD---------EKYFK--GS-FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADA 264 (407)
Q Consensus 198 dp~~iA~ay~~~GA~aISVLTd---------~~~F~--Gs-~edL~~Vr~a~v~lPVL~KDFIid~~QI~eAr~~G-ADa 264 (407)
+..++++..++.|++.|+|-.- +..+. |. ....+.+|+. +++||+.-..|.++.+..++.+.| ||.
T Consensus 253 ~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~-~~~pvi~~G~i~~~~~~~~~l~~g~~D~ 331 (382)
T cd02931 253 EGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEV-VDVPVIMAGRMEDPELASEAINEGIADM 331 (382)
T ss_pred HHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHH-CCCCEEEeCCCCCHHHHHHHHHcCCCCe
Confidence 4457899999999999998421 11121 22 2456778887 899999999999999999998876 999
Q ss_pred EEEeccCCCHHHH
Q 015424 265 VLLIAAVLPDLDI 277 (407)
Q Consensus 265 VLLiaaiL~~~~L 277 (407)
|.+.=.++.+.+|
T Consensus 332 V~~gR~~ladP~l 344 (382)
T cd02931 332 ISLGRPLLADPDV 344 (382)
T ss_pred eeechHhHhCccH
Confidence 9998888877665
Done!