RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 015424
(407 letters)
>gnl|CDD|215254 PLN02460, PLN02460, indole-3-glycerol-phosphate synthase.
Length = 338
Score = 646 bits (1669), Expect = 0.0
Identities = 281/351 (80%), Positives = 314/351 (89%), Gaps = 13/351 (3%)
Query: 55 ETKDGSATISSVMEDAETALKAKEWEVGMLINEVAASQGIKIRRRPPTGPPLHYVGPFQF 114
+K GSA + +D AL+ KEWEVGM NE+AASQGI+IRRRPPTGPPLHYVGPFQF
Sbjct: 1 ASKSGSA----LYDDMFNALEVKEWEVGMSQNEIAASQGIRIRRRPPTGPPLHYVGPFQF 56
Query: 115 RIQNEGNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRT 174
R+QNEGNTPRNILEEIVW+KDVEV Q+K+R+PL +LK AL NAPPARDF+GAL AA++RT
Sbjct: 57 RLQNEGNTPRNILEEIVWYKDVEVAQMKERKPLYLLKKALQNAPPARDFVGALRAAHKRT 116
Query: 175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVR 234
G P LIAEVKKASPSRG+LRE+FDPVEIA++YEKGGAACLS+LTDEKYF+GSFENLEA+R
Sbjct: 117 GQPGLIAEVKKASPSRGVLRENFDPVEIAQAYEKGGAACLSVLTDEKYFQGSFENLEAIR 176
Query: 235 SAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVE 294
+AGVKCPLLCKEFIVDAWQIYYAR+KGADA+LLIAAVLPDLDI+YM KICK LG+ AL+E
Sbjct: 177 NAGVKCPLLCKEFIVDAWQIYYARSKGADAILLIAAVLPDLDIKYMLKICKSLGMAALIE 236
Query: 295 VHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQK 354
VHDEREMDRVLGIEG+ELIGINNR+L ETFEVD SNTKKLLEGERGE IR+K
Sbjct: 237 VHDEREMDRVLGIEGVELIGINNRSL---------ETFEVDISNTKKLLEGERGEQIREK 287
Query: 355 NIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFGKDI 405
IIVVGESGLFTPDD+AYVQ AGVKAVLVGES+VKQDDPGKGI GLFGKDI
Sbjct: 288 GIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQDDPGKGIAGLFGKDI 338
>gnl|CDD|234710 PRK00278, trpC, indole-3-glycerol-phosphate synthase; Reviewed.
Length = 260
Score = 364 bits (937), Expect = e-126
Identities = 142/281 (50%), Positives = 183/281 (65%), Gaps = 22/281 (7%)
Query: 123 PRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAE 182
+IL++IV +K EV K + PL+ LK APP RDF AL R G PA+IAE
Sbjct: 1 MMDILDKIVAYKREEVAARKAQVPLAELKARAAAAPPPRDFAAAL-----RAGKPAVIAE 55
Query: 183 VKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPL 242
VKKASPS+G++REDFDPVEIA++YE GGAACLS+LTDE++F+GS E L A R+A V P+
Sbjct: 56 VKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAA-VSLPV 114
Query: 243 LCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMD 302
L K+FI+D +QIY AR GADA+LLI A L D ++ + LGL LVEVHDE E++
Sbjct: 115 LRKDFIIDPYQIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELE 174
Query: 303 RVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGES 362
R L G LIGINNRNL +TFEVD T++L + +VV ES
Sbjct: 175 RAL-KLGAPLIGINNRNL---------KTFEVDLETTERLAPL------IPSDRLVVSES 218
Query: 363 GLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFGK 403
G+FTP+D+ + +AG AVLVGES+++ DDPG + L G
Sbjct: 219 GIFTPEDLKRLAKAGADAVLVGESLMRADDPGAALRELLGA 259
>gnl|CDD|223212 COG0134, TrpC, Indole-3-glycerol phosphate synthase [Amino acid
transport and metabolism].
Length = 254
Score = 300 bits (771), Expect = e-101
Identities = 129/271 (47%), Positives = 180/271 (66%), Gaps = 22/271 (8%)
Query: 127 LEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKA 186
LE+I+ K EV K + PL+ L+ + +A RDF AL A+ + PA+IAEVKKA
Sbjct: 1 LEKILADKKEEVAARKAKLPLAELRAKIRSAD--RDFYAALKEASGK---PAVIAEVKKA 55
Query: 187 SPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKE 246
SPS+G++REDFDPVEIA++YE+GGAA +S+LTD KYF+GSFE+L AVR+A V P+L K+
Sbjct: 56 SPSKGLIREDFDPVEIAKAYEEGGAAAISVLTDPKYFQGSFEDLRAVRAA-VDLPVLRKD 114
Query: 247 FIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLG 306
FI+D +QIY AR GADAVLLI A L D + + LG+ LVEVH+E E++R L
Sbjct: 115 FIIDPYQIYEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNEEELERALK 174
Query: 307 IEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFT 366
+ G ++IGINNR+L T EVD T+KL K++I++ ESG+ T
Sbjct: 175 L-GAKIIGINNRDL---------TTLEVDLETTEKLAPL------IPKDVILISESGIST 218
Query: 367 PDDIAYVQEAGVKAVLVGESIVKQDDPGKGI 397
P+D+ + +AG A LVGE++++ DDP + +
Sbjct: 219 PEDVRRLAKAGADAFLVGEALMRADDPEEAL 249
>gnl|CDD|238203 cd00331, IGPS, Indole-3-glycerol phosphate synthase (IGPS); an
enzyme in the tryptophan biosynthetic pathway,
catalyzing the ring closure reaction of
1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate
(CdRP) to indole-3-glycerol phosphate (IGP), accompanied
by the release of carbon dioxide and water. IGPS is
active as a separate monomer in most organisms, but is
also found fused to other enzymes as part of a
bifunctional or multifunctional enzyme involved in
tryptophan biosynthesis.
Length = 217
Score = 294 bits (756), Expect = 2e-99
Identities = 117/238 (49%), Positives = 164/238 (68%), Gaps = 21/238 (8%)
Query: 163 FIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKY 222
F AL +R G +IAEVK+ASPS+G++REDFDPVEIA++YEK GAA +S+LT+ KY
Sbjct: 1 FKAAL----KRPGGLGVIAEVKRASPSKGLIREDFDPVEIAKAYEKAGAAAISVLTEPKY 56
Query: 223 FKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTK 282
F+GS E+L AVR A V P+L K+FI+D +QIY AR GADAVLLI A L D ++ + +
Sbjct: 57 FQGSLEDLRAVREA-VSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYE 115
Query: 283 ICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKL 342
+ + LG+ LVEVHDE E++R L + G ++IGINNR+L +TFEVD + T++L
Sbjct: 116 LARELGMEVLVEVHDEEELERALAL-GAKIIGINNRDL---------KTFEVDLNTTERL 165
Query: 343 LEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 400
+ K++I+V ESG+ TP+D+ + EAG AVL+GES+++ DPG + L
Sbjct: 166 AP------LIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMRAPDPGAALREL 217
>gnl|CDD|215798 pfam00218, IGPS, Indole-3-glycerol phosphate synthase.
Length = 254
Score = 275 bits (706), Expect = 2e-91
Identities = 128/274 (46%), Positives = 175/274 (63%), Gaps = 20/274 (7%)
Query: 127 LEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKA 186
LE+IV K EV K R PL+ L+ APP R F AL + R PALIAEVKKA
Sbjct: 1 LEKIVADKREEVAAAKARPPLADLQADARLAPPTRSFYDALRESRGR---PALIAEVKKA 57
Query: 187 SPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKE 246
SPS+G++REDFDP EIAR YE GA+ +S+LT+ KYF+GS E L VR A V P+L K+
Sbjct: 58 SPSKGLIREDFDPAEIARVYEAAGASAISVLTEPKYFQGSLEYLREVREA-VSLPVLRKD 116
Query: 247 FIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLG 306
FI+D +QIY AR GAD VLLI AVL D + + + + LG+ LVEVH+E E++R L
Sbjct: 117 FIIDEYQIYEARAYGADTVLLIVAVLSDELLEELYEYARSLGMEPLVEVHNEEELERALA 176
Query: 307 IEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFT 366
+ G +LIG+NNRNL +TFEVD + T++L ++ +++++V ESG+ T
Sbjct: 177 L-GAKLIGVNNRNL---------KTFEVDLNTTRRLA-----PMVP-EDVLLVAESGIST 220
Query: 367 PDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 400
P+D+ + + G A LVGES+++ D + I L
Sbjct: 221 PEDVEKLAKHGANAFLVGESLMRAPDVRQAIREL 254
>gnl|CDD|236509 PRK09427, PRK09427, bifunctional indole-3-glycerol phosphate
synthase/phosphoribosylanthranilate isomerase;
Provisional.
Length = 454
Score = 229 bits (586), Expect = 7e-71
Identities = 105/268 (39%), Positives = 156/268 (58%), Gaps = 26/268 (9%)
Query: 125 NILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVK 184
+L +IV K + V KQ++PL+ +N + P R F AL A I E K
Sbjct: 5 TVLAKIVADKAIWVAARKQQQPLASFQNEI--QPSDRSFYDALKGPK-----TAFILECK 57
Query: 185 KASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLC 244
KASPS+G++R+DFDP EIAR Y K A+ +S+LTDEKYF+GSF+ L VR+ V P+LC
Sbjct: 58 KASPSKGLIRDDFDPAEIARVY-KHYASAISVLTDEKYFQGSFDFLPIVRAI-VTQPILC 115
Query: 245 KEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRV 304
K+FI+D +QIY AR GADA+LL+ +VL D R + + L + L EV +E E++R
Sbjct: 116 KDFIIDPYQIYLARYYGADAILLMLSVLDDEQYRQLAAVAHSLNMGVLTEVSNEEELERA 175
Query: 305 LGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGL 364
+ + G ++IGINNRNL +D + T++L +I ++IV+ ESG+
Sbjct: 176 IAL-GAKVIGINNRNL---------RDLSIDLNRTREL-----APLIP-ADVIVISESGI 219
Query: 365 FTPDDIAYVQEAGVKAVLVGESIVKQDD 392
+T + + L+G S++ +DD
Sbjct: 220 YTHAQVRELSP-FANGFLIGSSLMAEDD 246
>gnl|CDD|140013 PRK13957, PRK13957, indole-3-glycerol-phosphate synthase;
Provisional.
Length = 247
Score = 146 bits (369), Expect = 2e-41
Identities = 100/279 (35%), Positives = 150/279 (53%), Gaps = 32/279 (11%)
Query: 123 PRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAE 182
+L EI+ K E+ ++ + PL D P RD + ++ ++IAE
Sbjct: 1 MHRVLREIIETKQNEIEKISRWDPLP------DRGLPLRD--------SLKSRSFSIIAE 46
Query: 183 VKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPL 242
K+ SPS G LR D+ PV+IA++YE GA+ +S+LTD+ YF GS E+L++V S+ +K P+
Sbjct: 47 CKRKSPSAGELRADYHPVQIAKTYETLGASAISVLTDQSYFGGSLEDLKSV-SSELKIPV 105
Query: 243 LCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMD 302
L K+FI+D QI AR GA A+LLI +L I+ K LG+ LVEVH E E
Sbjct: 106 LRKDFILDEIQIREARAFGASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTEDEAK 165
Query: 303 RVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGES 362
L G E+IGIN R+L +TF++ + L+E + NI+ VGES
Sbjct: 166 LALDC-GAEIIGINTRDL---------DTFQIH----QNLVEEVAAFLPP--NIVKVGES 209
Query: 363 GLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 401
G+ + D+ ++ V A L+G +++ D K LF
Sbjct: 210 GIESRSDLDKFRKL-VDAALIGTYFMEKKDIRKAWLSLF 247
>gnl|CDD|184335 PRK13802, PRK13802, bifunctional indole-3-glycerol phosphate
synthase/tryptophan synthase subunit beta; Provisional.
Length = 695
Score = 152 bits (384), Expect = 2e-40
Identities = 100/277 (36%), Positives = 154/277 (55%), Gaps = 23/277 (8%)
Query: 125 NILEEIVWHKDVEVTQLKQRR-PLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEV 183
++L+E+V +E + ++ L +K A AP D L A+ G+P +IAE+
Sbjct: 2 SVLDELV-AGALEDQRTRELTVSLEEVKKAAAAAPAPIDATRWLKRAD---GIP-VIAEI 56
Query: 184 KKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL 243
K+ASPS+G L + DP +AR YE+GGA+ +S+LT+ + F GS ++ + VR+A V P+L
Sbjct: 57 KRASPSKGHLSDIPDPAALAREYEQGGASAISVLTEGRRFLGSLDDFDKVRAA-VHIPVL 115
Query: 244 CKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDR 303
K+FIV +QI+ AR GAD VLLI A L D ++++ + LG+T LVE H E++R
Sbjct: 116 RKDFIVTDYQIWEARAHGADLVLLIVAALDDAQLKHLLDLAHELGMTVLVETHTREEIER 175
Query: 304 VLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESG 363
+ G ++IGIN RNL + +VD + +L ++I+ V ESG
Sbjct: 176 AIA-AGAKVIGINARNL---------KDLKVDVNKYNELAADLPDDVIK------VAESG 219
Query: 364 LFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 400
+F ++ AG AVLVGE + DD + L
Sbjct: 220 VFGAVEVEDYARAGADAVLVGEGVATADDHELAVERL 256
>gnl|CDD|240073 cd04722, TIM_phosphate_binding, TIM barrel proteins share a
structurally conserved phosphate binding motif and in
general share an eight beta/alpha closed barrel
structure. Specific for this family is the conserved
phosphate binding site at the edges of strands 7 and 8.
The phosphate comes either from the substrate, as in the
case of inosine monophosphate dehydrogenase (IMPDH), or
from ribulose-5-phosphate 3-epimerase (RPE) or from
cofactors, like FMN.
Length = 200
Score = 37.2 bits (86), Expect = 0.007
Identities = 41/201 (20%), Positives = 74/201 (36%), Gaps = 24/201 (11%)
Query: 196 DFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVR---SAGVKCPLLCKEFIVDAW 252
DPVE+A++ + GA + + T + + + + V +A PL + I DA
Sbjct: 11 SGDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAA 70
Query: 253 QIYYARTK-----GADAVLLIAAV--LPDLDIRYMTKICK-LLGLTALVEVHDEREMDRV 304
GAD V + AV L D+ + ++ + + + +V++ E+
Sbjct: 71 AAVDIAAAAARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAA 130
Query: 305 LGIE-GIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESG 363
E G++ +G+ N R D R + V+ G
Sbjct: 131 AAEEAGVDEVGLGNGGGGGGG---RDAVPIADLLLIL---------AKRGSKVPVIAGGG 178
Query: 364 LFTPDDIAYVQEAGVKAVLVG 384
+ P+D A G V+VG
Sbjct: 179 INDPEDAAEALALGADGVIVG 199
>gnl|CDD|240079 cd04728, ThiG, Thiazole synthase (ThiG) is the tetrameric enzyme
that is involved in the formation of the thiazole moiety
of thiamin pyrophosphate, an essential ubiquitous
cofactor that plays an important role in carbohydrate
and amino acid metabolism. ThiG catalyzes the formation
of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP)
and dehydroglycine, with the help of the sulfur carrier
protein ThiS that carries the sulfur needed for thiazole
assembly on its carboxy terminus (ThiS-COSH).
Length = 248
Score = 34.8 bits (81), Expect = 0.057
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 350 IIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDP 393
II + ++ V+ ++G+ TP D A E G AVL+ +I K DP
Sbjct: 170 IIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDP 213
>gnl|CDD|224933 COG2022, ThiG, Uncharacterized enzyme of thiazole biosynthesis
[Nucleotide transport and metabolism].
Length = 262
Score = 33.8 bits (78), Expect = 0.12
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 350 IIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDP 393
II + ++ V+ ++G+ TP D A E G AVL+ +I + DP
Sbjct: 177 IIEEADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDP 220
>gnl|CDD|215192 PLN02334, PLN02334, ribulose-phosphate 3-epimerase.
Length = 229
Score = 33.1 bits (76), Expect = 0.16
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 353 QKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 400
+ +I V G G+ P I EAG ++ G ++ D + I+GL
Sbjct: 174 ELDIEVDG--GV-GPSTIDKAAEAGANVIVAGSAVFGAPDYAEVISGL 218
>gnl|CDD|147701 pfam05690, ThiG, Thiazole biosynthesis protein ThiG. This family
consists of several bacterial thiazole biosynthesis
protein G sequences. ThiG, together with ThiF and ThiH,
is proposed to be involved in the synthesis of
4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an
intermediate in the thiazole production pathway.
Length = 246
Score = 32.9 bits (76), Expect = 0.22
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 350 IIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDP 393
II + ++ V+ ++G+ TP D A E G AVL+ +I + DP
Sbjct: 169 IIEEADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDP 212
>gnl|CDD|184165 PRK13585, PRK13585,
1-(5-phosphoribosyl)-5-[(5-
phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase; Provisional.
Length = 241
Score = 30.3 bits (69), Expect = 1.4
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 336 NSNTKKLLEGERGEIIRQ----KNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK 389
N + + LLEG E +++ +I V+ G+ T DD+ ++EAG V+VG ++ K
Sbjct: 170 NVDVEGLLEGVNTEPVKELVDSVDIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYK 227
>gnl|CDD|214380 CHL00162, thiG, thiamin biosynthesis protein G; Validated.
Length = 267
Score = 30.4 bits (69), Expect = 1.5
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 350 IIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDP 393
II I V+ ++G+ TP + + E G VL+ ++ + +P
Sbjct: 184 IIENAKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNP 227
>gnl|CDD|234687 PRK00208, thiG, thiazole synthase; Reviewed.
Length = 250
Score = 30.0 bits (69), Expect = 2.1
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 350 IIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDP 393
II Q ++ V+ ++G+ TP D A E G AVL+ +I DP
Sbjct: 170 IIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDP 213
>gnl|CDD|223347 COG0269, SgbH, 3-hexulose-6-phosphate synthase and related proteins
[Carbohydrate transport and metabolism].
Length = 217
Score = 29.9 bits (68), Expect = 2.1
Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 13/136 (9%)
Query: 261 GADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNL 320
GAD V ++ A D I+ K+ K G +++ + ++ + ++ +G++ L
Sbjct: 80 GADWVTVLGAA-DDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRA--KWLKELGVDQVIL 136
Query: 321 AISIFSYRT-ETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVK 379
+ +++ D+ K L ++ V G G+ TP+DI + G
Sbjct: 137 HRGRDAQAAGKSWGEDDLEKIKKLSDLGAKVA------VAG--GI-TPEDIPLFKGIGAD 187
Query: 380 AVLVGESIVKQDDPGK 395
V+VG +I DP +
Sbjct: 188 IVIVGRAITGAKDPAE 203
>gnl|CDD|218092 pfam04452, Methyltrans_RNA, RNA methyltransferase. RNA
methyltransferases modify nucleotides during ribosomal
RNA maturation in a site-specific manner. The
Escherichia coli member is specific for U1498
methylation.
Length = 224
Score = 29.1 bits (66), Expect = 3.4
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 356 IIVVG-ESGLFTPDDIAYVQEAGVKAVLVGESI 387
++++G E G F+P +I ++EAG V +G I
Sbjct: 177 LLIIGPEGG-FSPKEIELLKEAGFTPVSLGPRI 208
>gnl|CDD|129443 TIGR00343, TIGR00343, pyridoxal 5'-phosphate synthase, synthase
subunit Pdx1. This protein had been believed to be a
singlet oxygen resistance protein. Subsequent work
showed that it is a protein of pyridoxine (vitamin B6)
biosynthesis, and that pyridoxine quenches the highly
toxic singlet form of oxygen produced by light in the
presence of certain chemicals [Biosynthesis of
cofactors, prosthetic groups, and carriers, Pyridoxine].
Length = 287
Score = 29.4 bits (66), Expect = 3.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 363 GLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGK 395
G+ TP D A + + G V VG I K +P K
Sbjct: 207 GVATPADAALMMQLGADGVFVGSGIFKSSNPEK 239
>gnl|CDD|181392 PRK08332, PRK08332, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 1740
Score = 29.7 bits (66), Expect = 3.8
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 335 DNSNTKKLLEGERGEIIRQKNIIVVGESGLFTP-------DDIAYVQEAGVKAVLVGESI 387
D N + +L+ +G IR N VVG++ + TP + + +E G K + E I
Sbjct: 893 DVINRRNVLKEAKGGPIRATNPCVVGDTRILTPEGYIKAEELFSLAKERGKKEAVAVEGI 952
Query: 388 VKQDDP 393
++ +P
Sbjct: 953 AEEGEP 958
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type
II. Chaperonins are involved in productive folding of
proteins. They share a common general morphology, a
double toroid of 2 stacked rings, each composed of 7-9
subunits. There are 2 main chaperonin groups. The
symmetry of type I is seven-fold and they are found in
eubacteria (GroEL) and in organelles of eubacterial
descent (hsp60 and RBP). The symmetry of type II is
eight- or nine-fold and they are found in archea
(thermosome), thermophilic bacteria (TF55) and in the
eukaryotic cytosol (CTT). Their common function is to
sequester nonnative proteins inside their central cavity
and promote folding by using energy derived from ATP
hydrolysis.
Length = 464
Score = 29.3 bits (67), Expect = 4.1
Identities = 28/120 (23%), Positives = 43/120 (35%), Gaps = 22/120 (18%)
Query: 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVR--- 234
L+ E +K L P EI R YEK L IL E E+ E +
Sbjct: 91 ELLKEAEKL------LAAGIHPTEIIRGYEKAVEKALEIL-KEIAVPIDVEDREELLKVA 143
Query: 235 --SAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTAL 292
S K +F+ + + DAVL + D+D+ + ++ K G +
Sbjct: 144 TTSLNSKLVSGGDDFLGE--LV-------VDAVLKVGKENGDVDLG-VIRVEKKKGGSLE 193
>gnl|CDD|240077 cd04726, KGPDC_HPS, 3-Keto-L-gulonate 6-phosphate decarboxylase
(KGPDC) and D-arabino-3-hexulose-6-phosphate synthase
(HPS). KGPDC catalyzes the formation of L-xylulose
5-phosphate and carbon dioxide from 3-keto-L-gulonate
6-phosphate as part of the anaerobic pathway for
L-ascorbate utilization in some eubacteria. HPS
catalyzes the formation of
D-arabino-3-hexulose-6-phosphate from D-ribulose
5-phosphate and formaldehyde in microorganisms that can
use formaldehyde as a carbon source. Both catalyze
reactions that involve the Mg2+-assisted formation and
stabilization of 1,2-enediolate reaction intermediates.
Length = 202
Score = 28.7 bits (65), Expect = 4.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 366 TPDDIAYVQEAGVKAVLVGESIVKQDDP 393
TPD + ++AG V+VG +I DP
Sbjct: 168 TPDTLPEFKKAGADIVIVGRAITGAADP 195
>gnl|CDD|236560 PRK09549, mtnW, 2,3-diketo-5-methylthiopentyl-1-phosphate enolase;
Reviewed.
Length = 407
Score = 29.2 bits (66), Expect = 4.2
Identities = 11/21 (52%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
Query: 306 GIEGI-ELIGINNRNLAISIF 325
GI+GI L+G+++R L +SIF
Sbjct: 121 GIDGIRNLLGVHDRPLLMSIF 141
>gnl|CDD|240078 cd04727, pdxS, PdxS is a subunit of the pyridoxal 5'-phosphate
(PLP) synthase, an important enzyme in deoxyxylulose
5-phosphate (DXP)-independent pathway for de novo
biosynthesis of PLP, present in some eubacteria, in
archaea, fungi, plants, plasmodia, and some metazoa.
Together with PdxT, PdxS forms the PLP synthase, a
heteromeric glutamine amidotransferase (GATase), whereby
PdxT produces ammonia from glutamine and PdxS combines
ammonia with five- and three-carbon phosphosugars to
form PLP. PLP is the biologically active form of vitamin
B6, an essential cofactor in many biochemical processes.
PdxS subunits form two hexameric rings.
Length = 283
Score = 29.1 bits (66), Expect = 4.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 363 GLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGK 395
G+ TP D A + + G V VG I K ++P K
Sbjct: 204 GVATPADAALMMQLGADGVFVGSGIFKSENPEK 236
>gnl|CDD|181086 PRK07695, PRK07695, transcriptional regulator TenI; Provisional.
Length = 201
Score = 28.8 bits (65), Expect = 4.4
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 337 SNTKKLLEGERG-----EIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 391
++ KK + RG +I R +I V+ G+ TP++ V AGV + V I
Sbjct: 127 TDCKKGVPA-RGLEELSDIARALSIPVIAIGGI-TPENTRDVLAAGVSGIAVMSGIFSSA 184
Query: 392 DP 393
+P
Sbjct: 185 NP 186
>gnl|CDD|234907 PRK01130, PRK01130, N-acetylmannosamine-6-phosphate 2-epimerase;
Provisional.
Length = 221
Score = 28.6 bits (65), Expect = 4.9
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 349 EIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESI 387
E+++ V+ E + TP+ E G AV+VG +I
Sbjct: 167 ELLKAVGCPVIAEGRINTPEQAKKALELGAHAVVVGGAI 205
>gnl|CDD|238317 cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP
synthase)/TenI. TMP synthase catalyzes an important step
in the thiamine biosynthesis pathway, the substitution
of the pyrophosphate of 2-methyl-4-amino-5-
hydroxymethylpyrimidine pyrophosphate by 4-methyl-5-
(beta-hydroxyethyl) thiazole phosphate to yield thiamine
phosphate. TenI is a enzymatically inactive regulatory
protein involved in the regulation of several
extracellular enzymes. This superfamily also contains
other enzymatically inactive proteins with unknown
functions.
Length = 196
Score = 28.3 bits (64), Expect = 5.4
Identities = 49/206 (23%), Positives = 74/206 (35%), Gaps = 41/206 (19%)
Query: 198 DPVEIARSYEKGGAACLSI----LTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIV-DAW 252
D +E+ + KGG + + L+ + + + E R GV I+ D
Sbjct: 13 DLLEVVEAALKGGVTLVQLREKDLSARELLELARALRELCRKYGVP-------LIINDRV 65
Query: 253 QIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIEL 312
+ A GAD V L LP + R + ++G++ H E R G +
Sbjct: 66 DL--ALAVGADGVHLGQDDLPVAEARALLGPDLIIGVS----THSLEEALR-AEELGADY 118
Query: 313 IGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERG-----EIIRQKNIIVVGESGLFTP 367
+G +F + TK G EI I VV G+ TP
Sbjct: 119 VGFG------PVFP----------TPTKPGAGPPLGLELLREIAELVEIPVVAIGGI-TP 161
Query: 368 DDIAYVQEAGVKAVLVGESIVKQDDP 393
++ A V AG V V +I DDP
Sbjct: 162 ENAAEVLAAGADGVAVISAITGADDP 187
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 28.8 bits (65), Expect = 5.6
Identities = 14/64 (21%), Positives = 21/64 (32%)
Query: 323 SIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVL 382
+F+ S K + E I +N+ G D+ +AG L
Sbjct: 293 KLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTAL 352
Query: 383 VGES 386
VG S
Sbjct: 353 VGAS 356
>gnl|CDD|235515 PRK05581, PRK05581, ribulose-phosphate 3-epimerase; Validated.
Length = 220
Score = 28.2 bits (64), Expect = 6.1
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 367 PDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFGK 403
D+I EAG + G ++ D + I L +
Sbjct: 181 ADNIKECAEAGADVFVAGSAVFGAPDYKEAIDSLRAE 217
>gnl|CDD|240303 PTZ00170, PTZ00170, D-ribulose-5-phosphate 3-epimerase;
Provisional.
Length = 228
Score = 28.0 bits (63), Expect = 6.8
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 349 EIIRQK----NIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 400
+R++ NI V G G+ + I +AG ++ G SI K D + I L
Sbjct: 165 RELRKRYPHLNIQVDG--GI-NLETIDIAADAGANVIVAGSSIFKAKDRKQAIELL 217
>gnl|CDD|224303 COG1385, COG1385, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 246
Score = 28.4 bits (64), Expect = 7.1
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 347 RGEIIRQKNI-IVVGESGLFTPDDIAYVQEAGVKAVLVGESI 387
E + + + +++G G F+ D+I ++EAG V +G I
Sbjct: 185 LLEALPEGKVLLIIGPEGGFSEDEIELLREAGFTPVSLGPRI 226
>gnl|CDD|240080 cd04729, NanE, N-acetylmannosamine-6-phosphate epimerase (NanE)
converts N-acetylmannosamine-6-phosphate to
N-acetylglucosamine-6-phosphate. This reaction is part
of the pathway that allows the usage of sialic acid as a
carbohydrate source. Sialic acids are a family of
related sugars that are found as a component of
glycoproteins, gangliosides, and other
sialoglycoconjugates.
Length = 219
Score = 27.9 bits (63), Expect = 7.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 348 GEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESI 387
E+ + I V+ E + +P+ A E G AV+VG +I
Sbjct: 170 KELRKALGIPVIAEGRINSPEQAAKALELGADAVVVGSAI 209
>gnl|CDD|237513 PRK13803, PRK13803, bifunctional phosphoribosylanthranilate
isomerase/tryptophan synthase subunit beta; Provisional.
Length = 610
Score = 28.2 bits (63), Expect = 8.2
Identities = 7/57 (12%), Positives = 16/57 (28%), Gaps = 2/57 (3%)
Query: 159 PARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLS 215
A + A+ A + + + + D V++ + K A
Sbjct: 44 LAPNLEKAIRKA--GGRPVGVFVNESAKAMLKFSKKNGIDFVQLHGAESKAEPAYCQ 98
>gnl|CDD|223292 COG0214, SNZ1, Pyridoxine biosynthesis enzyme [Coenzyme
metabolism].
Length = 296
Score = 28.0 bits (63), Expect = 8.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 363 GLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGK 395
G+ TP D A + + G V VG I K +P K
Sbjct: 216 GVATPADAALMMQLGADGVFVGSGIFKSSNPEK 248
>gnl|CDD|233457 TIGR01539, portal_lambda, phage portal protein, lambda family.
This model represents one of several distantly related
families of phage portal protein. This protein forms a
hole, or portal, that enables DNA passage during
packaging and ejection. It also forms the junction
between the phage head (capsid) and the tail proteins.
It functions as a dodecamer of a single polypeptide of
average mol. wt. of 40-90 KDa [Mobile and
extrachromosomal element functions, Prophage
functions].
Length = 458
Score = 28.3 bits (63), Expect = 9.3
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Query: 16 PTLNRRPSKFSIVRSVPASAMDAHRRNGVGFTPIRAQKAETKDGSATISSVMEDAETALK 75
L R + A+A+D H+ N VG I + + + T++ D A
Sbjct: 27 RLLRARARDLVRNNDIVANAIDLHKDNIVGHMGIISYRPQWLGRRGTLAKSFVDKIEAAW 86
Query: 76 AKEWEVG 82
+ EW G
Sbjct: 87 S-EWAEG 92
>gnl|CDD|146925 pfam04529, Herpes_U59, Herpesvirus U59 protein. The proteins in
this family have no known function. Cytomegalovirus UL88
is also a member of this family.
Length = 365
Score = 28.2 bits (63), Expect = 9.4
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 98 RRPPTGPPLHYVGP--FQFRIQNEGNTPRNI---LEEIVWHKDVEVTQLKQRRPLS 148
+ G Y P + R+++ PR + ++W DV + +K+R P +
Sbjct: 95 QMSRDGRDELYEVPKVYLIRVRDGNGGPREVSWPKTSVLWAPDVGIKTVKRRSPAA 150
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.390
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,375,808
Number of extensions: 2142688
Number of successful extensions: 2164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2127
Number of HSP's successfully gapped: 64
Length of query: 407
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 308
Effective length of database: 6,546,556
Effective search space: 2016339248
Effective search space used: 2016339248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)