RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 015424
(407 letters)
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics,
ssgcid, seattle structural GE center for infectious
disease, lyase; 2.15A {Brucella melitensis}
Length = 272
Score = 392 bits (1010), Expect = e-137
Identities = 110/288 (38%), Positives = 168/288 (58%), Gaps = 18/288 (6%)
Query: 120 GNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPAL 179
G+ +IL +I +K E+ K R L LK + R F+ AL A + G AL
Sbjct: 3 GSMSTDILRKIEAYKREEIAAAKARLALDELKARTRDQSAPRGFLKALEAK-RAAGQFAL 61
Query: 180 IAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVK 239
IAE+KKASPS+G++R DFDP +A++YE+GGAACLS+LTD F+G+ E L A R A
Sbjct: 62 IAEIKKASPSKGLIRPDFDPPALAKAYEEGGAACLSVLTDTPSFQGAPEFLTAARQA-CS 120
Query: 240 CPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDER 299
P L K+F+ D +Q+Y AR+ GAD +L+I A + D + + LG+ AL+EVHDE
Sbjct: 121 LPALRKDFLFDPYQVYEARSWGADCILIIMASVDDDLAKELEDTAFALGMDALIEVHDEA 180
Query: 300 EMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVV 359
EM+R L + L+G+NNRNL +FEV+ + +++L + + + ++V
Sbjct: 181 EMERALKL-SSRLLGVNNRNL---------RSFEVNLAVSERLAK------MAPSDRLLV 224
Query: 360 GESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFGKDISV 407
GESG+FT +D ++++G+ L+GES+++Q D L +
Sbjct: 225 GESGIFTHEDCLRLEKSGIGTFLIGESLMRQHDVAAATRALLTGAEKL 272
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T
structural genomics consortium, TBSGC, lyase; 1.29A
{Mycobacterium tuberculosis}
Length = 272
Score = 379 bits (975), Expect = e-132
Identities = 102/281 (36%), Positives = 153/281 (54%), Gaps = 22/281 (7%)
Query: 122 TPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIA 181
+P +L+ I+ +V + LS +K A APP D + AL R +IA
Sbjct: 2 SPATVLDSILEGVRADVAAREASVSLSEIKAAAAAAPPPLDVMAAL-----REPGIGVIA 56
Query: 182 EVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCP 241
EVK+ASPS G L DP ++A++Y+ GGA +S++T+++ F+GS ++L+AVR++ V P
Sbjct: 57 EVKRASPSAGALATIADPAKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVRAS-VSIP 115
Query: 242 LLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREM 301
+L K+F+V +QI+ AR GAD +LLI A L + M + LG+TALVEVH E+E
Sbjct: 116 VLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEA 175
Query: 302 DRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGE 361
DR L G ++IG+N R+L T +VD ++ G ++I + E
Sbjct: 176 DRALKA-GAKVIGVNARDL---------MTLDVDRDCFARIAPG------LPSSVIRIAE 219
Query: 362 SGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 402
SG+ D+ AG AVLVGE +V DP + L
Sbjct: 220 SGVRGTADLLAYAGAGADAVLVGEGLVTSGDPRAAVADLVT 260
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase
and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4
c.1.2.4 PDB: 1jcm_P* 2kzh_A
Length = 452
Score = 361 bits (928), Expect = e-122
Identities = 96/283 (33%), Positives = 147/283 (51%), Gaps = 26/283 (9%)
Query: 125 NILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVK 184
+L +IV K + V KQ++PL+ +N + P R F AL + A I E K
Sbjct: 3 TVLAKIVADKAIWVEARKQQQPLASFQNEV--QPSTRHFYDAL-----QGARTAFILECK 55
Query: 185 KASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLC 244
KASPS+G++R+DFDP IA Y+ A+ +S+LTDEKYF+GSF L V P+LC
Sbjct: 56 KASPSKGVIRDDFDPARIAAIYK-HYASAISVLTDEKYFQGSFNFLPIVSQI-APQPILC 113
Query: 245 KEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRV 304
K+FI+D +QIY AR ADA LL+ +VL D R + + L + L EV +E E +R
Sbjct: 114 KDFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERA 173
Query: 305 LGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGL 364
+ + G +++GINNR+L +D + T++L N+ V+ ESG+
Sbjct: 174 IAL-GAKVVGINNRDL---------RDLSIDLNRTRELAP------KLGHNVTVISESGI 217
Query: 365 FTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFGKDISV 407
T + + L+G +++ DD + + + V
Sbjct: 218 NTYAQVRELS-HFANGFLIGSALMAHDDLHAAVRRVLLGENKV 259
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel
protein, salt bridges, electrostatic interactions,
lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB:
1j5t_A
Length = 251
Score = 339 bits (871), Expect = e-116
Identities = 82/278 (29%), Positives = 139/278 (50%), Gaps = 30/278 (10%)
Query: 127 LEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKA 186
L EIV K ++ ++ + F+ L + +IAE KKA
Sbjct: 3 LWEIVEAKKKDILEIDGENLIV--------QRRNHRFLEVLSGKER----VKIIAEFKKA 50
Query: 187 SPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKE 246
SPS G + D + R Y++ A +SILT++ YFKG + A R+ P+L K+
Sbjct: 51 SPSAGDINADASLEDFIRMYDEL-ADAISILTEKHYFKGDPAFVRAARNL-TCRPILAKD 108
Query: 247 FIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLG 306
F +D Q+ A + GADA+L+IA +L I+ + + + LG+ +LVEVH ++++V
Sbjct: 109 FYIDTVQVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSREDLEKVFS 168
Query: 307 IEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFT 366
+ ++IGIN R+L +TFE+ + +LL + + +VV ESG+
Sbjct: 169 VIRPKIIGINTRDL---------DTFEIKKNVLWELLP------LVPDDTVVVAESGIKD 213
Query: 367 PDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFGKD 404
P ++ ++ V AVLVG SI+K ++P + + +
Sbjct: 214 PRELKDLR-GKVNAVLVGTSIMKAENPRRFLEEMRAWS 250
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan
biosynthesis, riken structural genomics/PR initiative,
RSGI, structural genomics; 1.80A {Thermus thermophilus}
SCOP: c.1.2.4
Length = 254
Score = 333 bits (857), Expect = e-114
Identities = 96/287 (33%), Positives = 143/287 (49%), Gaps = 33/287 (11%)
Query: 116 IQNEGNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTG 175
++ + + +L EI + EV P P F AL
Sbjct: 1 MRPDLSRVPGVLGEIARKRASEVAPYPLPEP-----------PSVPSFKEAL-----LRP 44
Query: 176 LPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRS 235
++IAEVK+ SPS G++R + DPVE A +Y +GGA +S+LT+ F GS +L+ VR
Sbjct: 45 GLSVIAEVKRQSPSEGLIR-EVDPVEAALAYARGGARAVSVLTEPHRFGGSLLDLKRVRE 103
Query: 236 AGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEV 295
A V PLL K+F+VD + + AR GA A LLI A+L +L Y+ + + LGL ALVEV
Sbjct: 104 A-VDLPLLRKDFVVDPFMLEEARAFGASAALLIVALLGELTGAYL-EEARRLGLEALVEV 161
Query: 296 HDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKN 355
H ERE++ L G E++GINNR+L T ++ +L R
Sbjct: 162 HTERELEIALEA-GAEVLGINNRDL---------ATLHINLETAPRLGRLARKR---GFG 208
Query: 356 IIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 402
++V ESG +++ + E AVL+G S+++ D + L G
Sbjct: 209 GVLVAESGYSRKEELKAL-EGLFDAVLIGTSLMRAPDLEAALRELVG 254
>3uy7_A KEMP eliminase KE59 R1 7/10H; structural genomics, israel
structural proteomics center, is barrel, lyase; 1.45A
{Escherichia coli} PDB: 3uxd_A* 3uxa_A* 3nyz_A 3nz1_A*
3uy8_A 3uyc_A 3uzj_A 3uz5_A 1igs_A 1juk_A 1jul_A* 3tc7_A
3tc6_A 1a53_A* 1lbf_A* 1lbl_A* 3nl8_A* 3nxf_A* 3o6y_X
3ud6_A* ...
Length = 252
Score = 312 bits (801), Expect = e-106
Identities = 80/269 (29%), Positives = 133/269 (49%), Gaps = 25/269 (9%)
Query: 127 LEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKA 186
+ + +V QL RRP P ++ N+R + A+IA K+
Sbjct: 1 MPRYLKGALKDVVQLSLRRPSLRASRQ----RPIISLRERILEFNKR-NITAIIAVYKRK 55
Query: 187 SPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKE 246
SPS + DP+E A+ E A L ILT+EKYF GS+E+L + S+ V P+L +
Sbjct: 56 SPSGLDVE--RDPIEYAKFME-RYAVGLVILTEEKYFNGSYEDLRKIASS-VSIPILMWD 111
Query: 247 FIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLG 306
FIV QI A GAD V LI +L + ++ + + + G+ + ++DE ++D L
Sbjct: 112 FIVKESQIDDAYNLGADTVSLIVKILTERELESLLEYARSYGMEPAIVINDEEDLDIALR 171
Query: 307 IEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFT 366
I G +I I++R+L ET E++ N +KL+ I N++ V SG+
Sbjct: 172 I-GARIIIISSRDL---------ETLEINKENQRKLIS----MI--PSNVVKVAASGISE 215
Query: 367 PDDIAYVQEAGVKAVLVGESIVKQDDPGK 395
++I +++ GV A +G S+++ + K
Sbjct: 216 RNEIEELRKLGVNAFEIGSSLMRNPEKIK 244
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism,
sugars, csgid, carbohydrate metabolism, isomerase; HET:
MSE 16G; 1.50A {Salmonella enterica subsp}
Length = 232
Score = 50.5 bits (120), Expect = 2e-07
Identities = 36/247 (14%), Positives = 73/247 (29%), Gaps = 51/247 (20%)
Query: 178 ALIAEVKKASPSRG------------ILREDFDPVEIARSYEKGGAACLSILTDEKYFKG 225
+L+ ++ K + G L + +A + E+ GA + I
Sbjct: 5 SLLEQLDKNIAASGGLIVSCQPVPGSPLDKPEIVAAMALAAEQAGAVAVRI--------E 56
Query: 226 SFENLEAVRSAGVKCPL--LCKEFIVDA--------WQIYYARTKGADAVLLIAAVLPD- 274
+NL RS V P+ + K + ++ + GA + +
Sbjct: 57 GIDNLRMTRSL-VSVPIIGIIKRDLDESPVRITPFLDDVDALAQAGAAIIAVDGTARQRP 115
Query: 275 LDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEV 334
+ + + L + + + + G ++IG Y T
Sbjct: 116 VAVEALLARIHHHHLLTMADCSSVDDGLACQRL-GADIIGTTMSG-------YTTPDTPE 167
Query: 335 DNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPG 394
+ + + V+ E +P A G AV VG +I + +
Sbjct: 168 EPDL-------PLVKALHDAGCRVIAEGRYNSPALAAEAIRYGAWAVTVGSAITRLEH-- 218
Query: 395 KGITGLF 401
I G +
Sbjct: 219 --ICGWY 223
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel,
ribulose-phosphate binding barrel, carbohydrate
metabolic process; HET: BTB; 1.80A {Salmonella enterica
subsp}
Length = 229
Score = 47.3 bits (112), Expect = 2e-06
Identities = 46/235 (19%), Positives = 77/235 (32%), Gaps = 47/235 (20%)
Query: 178 ALIAEVKKASPSRGIL------------REDFDPVEIARSYEKGGAACLSILTDEKYFKG 225
+L+A ++++ G L + +A++ GA + I
Sbjct: 5 SLLARLEQSVHENGGLIVSCQPVPGSPMDKPEIVAAMAQAAASAGAVAVRI--------E 56
Query: 226 SFENLEAVRSAGVKCPL--LCKEFIVDA--------WQIYYARTKGADAVLLIAAVLPD- 274
ENL VR + P+ + K + + + GAD + A+
Sbjct: 57 GIENLRTVRPH-LSVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGADIIAFDASFRSRP 115
Query: 275 LDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEV 334
+DI + +L GL A+ + E GIE IG +S ++ E
Sbjct: 116 VDIDSLLTRIRLHGLLAMADCSTVNEGISCHQK-GIEFIGTT-----LSGYTGPITPVEP 169
Query: 335 DNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK 389
D + V+ E TP A E G AV VG +I +
Sbjct: 170 DL---------AMVTQLSHAGCRVIAEGRYNTPALAANAIEHGAWAVTVGSAITR 215
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 4e-06
Identities = 73/440 (16%), Positives = 127/440 (28%), Gaps = 155/440 (35%)
Query: 1 MEGLVSPKTTPRILFP----------TLNRRPSKFSIVRSVPAS-------AMDAH---R 40
+ L+ +F + P K + S+P S + AH
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK-DYLLSIPISCPLIGVIQL-AHYVVT 252
Query: 41 RNGVGFTPIRAQKAETKDGSATISSVMEDAETAL---KAKEWE------VGMLINEVAAS 91
+GFTP E + + + TA+ + WE + V
Sbjct: 253 AKLLGFTP-----GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI--TVLFF 305
Query: 92 QGIKIRRR-PPTGPPLHYVGPFQFRIQN-EGN-TP----RNILEEIVWHKDVEVT--QLK 142
G++ P T P + + ++N EG +P N+ +E V V T L
Sbjct: 306 IGVRCYEAYPNTSLPPSIL---EDSLENNEGVPSPMLSISNLTQEQV-QDYVNKTNSHLP 361
Query: 143 QRRPLSMLKNALDNAPPARDFIGALMAANQRTGLP----ALIAEVKKASPSRGILREDFD 198
+ + + +L N ++ + + +G P L ++KA G+ D
Sbjct: 362 AGKQVEI---SLVNGA--KNLV--V------SGPPQSLYGLNLTLRKAKAPSGL-----D 403
Query: 199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYAR 258
I S K F F L V ++ LL
Sbjct: 404 QSRIPFSERK------------LKFSNRF--L-PV-ASPFHSHLL--------------- 432
Query: 259 TKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH------DEREMDRVLGIEGIEL 312
A LI L ++ + K + + V+ D R + +
Sbjct: 433 ---VPASDLINKDLVKNNVSFNAKDIQ-------IPVYDTFDGSDLRVLSGSI------- 475
Query: 313 IGINNRNLAISIFSYR---------TETFEVD-----NSN----TKKLLEGERGEIIRQK 354
+ + I T +D S T + +G G +R
Sbjct: 476 ----SERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDG-TG--VR-- 526
Query: 355 NIIVVGESGLFTPDDIAYVQ 374
+IV G + DD + Q
Sbjct: 527 -VIVAGTLDINPDDDYGFKQ 545
Score = 43.9 bits (103), Expect = 9e-05
Identities = 40/230 (17%), Positives = 76/230 (33%), Gaps = 71/230 (30%)
Query: 100 PPTGPP------LHYVGPFQFRIQNEGNTPRNILEEIVWH--------KDVE--VTQLKQ 143
PT P L YV ++ +L + D+ +L Q
Sbjct: 53 EPTTPAELVGKFLGYVS--SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ 110
Query: 144 RRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIA 203
+++K ++ I + A P K S S +
Sbjct: 111 ENDTTLVK--------TKELIKNYITARIMAKRP-----FDKKSNSA-----------LF 146
Query: 204 RSYEKGGAACLSIL----TDEKYFKGSFE--NL---------EAVRSAGVKCPLLCKEFI 248
R+ +G A ++I + YF+ E +L + ++ + L +
Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDDYFE---ELRDLYQTYHVLVGDLIKFSAETLSELIRT-T 202
Query: 249 VDAWQIYYARTKGADAV--LLIAAVLPDLDIRYMTKI---CKLLGLTALV 293
+DA +++ T+G + + L + PD D Y+ I C L+G+ L
Sbjct: 203 LDAEKVF---TQGLNILEWLENPSNTPDKD--YLLSIPISCPLIGVIQLA 247
Score = 43.5 bits (102), Expect = 1e-04
Identities = 53/316 (16%), Positives = 93/316 (29%), Gaps = 97/316 (30%)
Query: 24 KFSIVRSVPASAMDAHRRNGVGFTPIRAQKAETKDGSATISSVMEDAETALKAKEWEVGM 83
+ V + D H ++ GF +I ++ + L
Sbjct: 1638 TSKAAQDV-WNRADNHFKDTYGF---------------SILDIVINNPVNLTIHF----- 1676
Query: 84 LINEVAASQGIKIRRRPPTGPPLHYVGPFQFRIQNEGNT-PRNILEEI-------VWHKD 135
+G +IR Y F +G I +EI + +
Sbjct: 1677 -----GGEKGKRIREN--------Y-SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE 1722
Query: 136 VEV---TQLKQRRP----LSM-----LKNALDNAPPARDFIG-------ALMAANQRTGL 176
+ TQ Q P + LK+ P F G AL + +
Sbjct: 1723 KGLLSATQFTQ--PALTLMEKAAFEDLKSK-GLIPADATFAGHSLGEYAALASLADVMSI 1779
Query: 177 PALIAEVKKASPSRGILREDFDPV-EIARSYEKGGAAC-----LSILTDEKYFKGSFENL 230
+L+ V RG+ + P E+ RS G A + + E + +
Sbjct: 1780 ESLVEVVFY----RGMTMQVAVPRDELGRS-NYGMIAINPGRVAASFSQE-----ALQ-- 1827
Query: 231 EAVRSAGVKCPLLCKEFIV----DAWQIYYARTKG-ADAVLLIAAVLPDLDIRYMTKICK 285
V G + L E IV + Q A G A+ + VL + ++ KI
Sbjct: 1828 YVVERVGKRTGWLV-E-IVNYNVENQQYVAA---GDLRALDTVTNVLNFIKLQ---KI-D 1878
Query: 286 LLGLTALVEVHDEREM 301
++ L + + +
Sbjct: 1879 IIELQKSLSLEEVEGH 1894
Score = 36.2 bits (83), Expect = 0.023
Identities = 46/266 (17%), Positives = 79/266 (29%), Gaps = 91/266 (34%)
Query: 149 MLKNALDNAPPARD-FIGALMAANQRTGLPALIAEVKKASP-----------SRGILRED 196
M + + A+D + A G I ++ +P + I RE+
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFS--ILDIVINNPVNLTIHFGGEKGKRI-REN 1687
Query: 197 FDPVEIARSYEKGGAACLSILTD-----EKY-FKGSFENLE----------AVRSAGVKC 240
+ + I + G I + Y F+ L + A +
Sbjct: 1688 YSAM-IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFE- 1745
Query: 241 PLLCKEFIVDAWQIY-------YARTKGADAVLLIAAVLP--DLDIRYMTKICKLL---G 288
L + ++ A + YA A+ +A V+ L +++ G
Sbjct: 1746 -DLKSKGLIPADATFAGHSLGEYA------ALASLADVMSIESL--------VEVVFYRG 1790
Query: 289 LTALVEV-HDEREMDRVLGIEGIELIGINNRNLAISI-----------FSYRTETF-EVD 335
+T V V DE LG +I IN +A S RT E+
Sbjct: 1791 MTMQVAVPRDE------LGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV 1844
Query: 336 NSNTKKLLEGERGEIIRQKNIIVVGE 361
N N E + Q + G+
Sbjct: 1845 NYNV----ENQ------Q--YVAAGD 1858
Score = 33.1 bits (75), Expect = 0.23
Identities = 26/169 (15%), Positives = 47/169 (27%), Gaps = 63/169 (37%)
Query: 300 EMDR----VLGIEGIELIGINNRNLAISIFS----------YRTETFE------------ 333
D G ++++ N NL I F Y FE
Sbjct: 1648 RADNHFKDTYGFSILDIVINNPVNLTI-HFGGEKGKRIRENYSAMIFETIVDGKLKTEKI 1706
Query: 334 ---VDNSNTKKLLEGERGEIIRQKN----IIVVG--------ESGLFTPDDI-------- 370
++ +T E+G + + + ++ GL D
Sbjct: 1707 FKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGE 1766
Query: 371 --AYVQEAGV----KAV-LV---GESI---VKQDDPGKGITGLFGKDIS 406
A A V V +V G ++ V +D+ G+ G+ +
Sbjct: 1767 YAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG 1815
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 1e-04
Identities = 56/378 (14%), Positives = 109/378 (28%), Gaps = 118/378 (31%)
Query: 67 MEDAETALKAKEWEVGMLINEVAASQGIK----IRRRPPTGPPLHYVGP-----FQF--- 114
++D ++ +KE E+ +I A G +V ++F
Sbjct: 38 VQDMPKSILSKE-EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 115 RIQNEGNTPRNILEEIV-----WHKDVEVT---QLKQRRPLSMLKNALDNAPPARDFI-- 164
I+ E P + + + D +V + + +P L+ AL PA++ +
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 165 GALMAANQRTGLPALIAEVKKASP-----SRGI----LREDFDPVEIARSYEKGGAACLS 215
G + +G + +V + I L+ P + +K L
Sbjct: 157 G--VLG---SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK-----LL 206
Query: 216 ILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLI------A 269
D + S ++ ++ L I + + LL+ A
Sbjct: 207 YQIDPNWTSRS-DHSSNIK--------LRIHSIQAELRRLLKSKPYENC-LLVLLNVQNA 256
Query: 270 AVLPDLDIRYMTKICKLLGLTALVEVHD--------------------EREMD----RVL 305
++ CK+L T +V D E+ + L
Sbjct: 257 KAWNAFNLS-----CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 306 GIEGIEL----IGINNRNLAISIFS-------YRTETFEVDNSNTKKLLEGERGEIIRQK 354
+L + N +SI + + ++ + N KL
Sbjct: 312 DCRPQDLPREVLTTN--PRRLSIIAESIRDGLATWDNWK--HVNCDKL-----------T 356
Query: 355 NIIVVGESGL--FTPDDI 370
II ES L P +
Sbjct: 357 TII---ESSLNVLEPAEY 371
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P
epimerase, NANE, structural genomics, protein STR
initiative, PSI; 1.95A {Staphylococcus aureus subsp}
SCOP: c.1.2.5
Length = 223
Score = 38.4 bits (89), Expect = 0.002
Identities = 32/211 (15%), Positives = 72/211 (34%), Gaps = 34/211 (16%)
Query: 191 GILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL------- 243
L F ++A + +GGA + + E++ A++ V P++
Sbjct: 17 EPLHSSFIMSKMALAAYEGGAVGIRA--------NTKEDILAIKET-VDLPVIGIVKRDY 67
Query: 244 --CKEFIVDAWQ-IYYARTKGADAVLLIAAV--LPDLDIRYMTKIC--KLLGLTALVEVH 296
FI + + + + L A + P + + + + ++
Sbjct: 68 DHSDVFITATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIA 127
Query: 297 DEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNI 356
E + G + IG + ++ ++ D K ++++ +
Sbjct: 128 TVEEAKNAARL-GFDYIGTTLH--GYTSYTQGQLLYQNDFQFLK--------DVLQSVDA 176
Query: 357 IVVGESGLFTPDDIAYVQEAGVKAVLVGESI 387
V+ E + TPD V + GV +VG +I
Sbjct: 177 KVIAEGNVITPDMYKRVMDLGVHCSVVGGAI 207
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural
genomics, epimerase, PSI, structure initiative; 1.60A
{Streptococcus pyogenes} SCOP: c.1.2.5
Length = 234
Score = 36.5 bits (84), Expect = 0.009
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 349 EIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESI 387
E + + I V+ E + +P++ + + GV ++VG +I
Sbjct: 180 EALCKAGIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAI 218
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta
barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP:
c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A*
1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A*
1xbx_A*
Length = 216
Score = 31.9 bits (72), Expect = 0.28
Identities = 20/178 (11%), Positives = 45/178 (25%), Gaps = 14/178 (7%)
Query: 220 EKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA--WQIYYARTKGADAVLLIAAVLPDLDI 277
+ +++ +L I DA AD V +I +
Sbjct: 37 ILCVGEGVRAVRDLKALYPHKIVLADAKIADAGKILSRMCFEANADWVTVICCADINT-A 95
Query: 278 RYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNS 337
+ + K +E+ ++ + + S + V
Sbjct: 96 KGALDVAKEFNGDVQIELTGYWTWEQAQQWRDAGI------GQVVYHRSRDAQAAGVAWG 149
Query: 338 NTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGK 395
+ + + V GL +D+ + + + G SI P +
Sbjct: 150 E----ADITAIKRLSDMGFKVTVTGGL-ALEDLPLFKGIPIHVFIAGRSIRDAASPVE 202
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate
decarboxylase, ULAD, niaid,CSG bound, biosynthetic
protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A*
Length = 218
Score = 31.9 bits (72), Expect = 0.31
Identities = 26/159 (16%), Positives = 45/159 (28%), Gaps = 12/159 (7%)
Query: 237 GVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH 296
K A A GAD + + AA I K+ L +E++
Sbjct: 59 NHILVCDMKTTDGGAILSRMAFEAGADWITVSAAAHIAT-IAACKKVADELNGEIQIEIY 117
Query: 297 DEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNI 356
M + +GI S + T L+ R +
Sbjct: 118 GNWTMQD---AKAWVDLGITQAIYHRSR-----DAELAGIGWTTDDLDKMRQLSALGIEL 169
Query: 357 IVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGK 395
+ G G+ P+DI + K + G ++ +
Sbjct: 170 SITG--GI-VPEDIYLFEGIKTKTFIAGRALAGAEGQQT 205
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein,
structural genomics, PSI-2, protein structure
initiative; 2.30A {Bacteroides thetaiotaomicron
vpi-5482}
Length = 210
Score = 31.1 bits (71), Expect = 0.49
Identities = 27/204 (13%), Positives = 60/204 (29%), Gaps = 49/204 (24%)
Query: 214 LSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273
L ++T +F + + A+ G+ L R A + +L
Sbjct: 3 LIVVTTPTFFVEEDKIITALFEEGLDILHL--------------RKPETPA-MYSERLLT 47
Query: 274 DLDIRYMTKI--------CKLLGLTALVEVH-DEREMDRVLGIEGIELIGINNRNLAISI 324
+ +Y +I + L +H + R G + + ++
Sbjct: 48 LIPEKYHRRIVTHEHFYLKEEFNLMG---IHLNARNPSEPHDYAGH--VSCSCHSVE--- 99
Query: 325 FSYRTETFEVD--------NSNTKKLLEGERG-----EIIRQKNII--VVGESGLFTPDD 369
+ D +S +K E + K I V+ G+ D+
Sbjct: 100 -EVKNRKHFYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGI-NEDN 157
Query: 370 IAYVQEAGVKAVLVGESIVKQDDP 393
+ +++ G +V + + D
Sbjct: 158 LLEIKDFGFGGAVVLGDLWNKFDA 181
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural
genomics, protein structure initiative, PSI; 2.90A
{Pseudomonas aeruginosa} SCOP: c.1.31.1
Length = 265
Score = 30.7 bits (70), Expect = 0.86
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 350 IIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDP 393
I+ + + V+ ++G+ T D A E G +AVL+ +I DP
Sbjct: 182 ILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDP 225
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein
structure initiative, PSI, NESG, northeast structural
genomics consortium; 1.80A {Bacillus subtilis} SCOP:
c.1.31.1 PDB: 1tyg_A
Length = 264
Score = 30.3 bits (69), Expect = 0.94
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 350 IIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDP 393
II Q + V+ ++G+ +P D AY E G VL+ ++ DDP
Sbjct: 173 IIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGADDP 216
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A
{Mycobacterium gastri}
Length = 207
Score = 30.0 bits (67), Expect = 1.1
Identities = 26/176 (14%), Positives = 52/176 (29%), Gaps = 16/176 (9%)
Query: 222 YFKGSFENLEAVRSAGVKCPLLC--KEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRY 279
+ AV+ A + K + A GAD V ++ + I
Sbjct: 36 IKAEGLSVITAVKKAHPDKIVFADMKTMDAGELEADIAFKAGADLVTVLGSADDST-IAG 94
Query: 280 MTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNT 339
K + +V++ D+ + + +G + + +
Sbjct: 95 AVKAAQAHNKGVVVDLIGI--EDKATRAQEVRALGAKFVEMHAGL-----------DEQA 141
Query: 340 KKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGK 395
K + +K + +G I VQ+AG + + G +I DP
Sbjct: 142 KPGFDLNGLLAAGEKARVPFSVAGGVKVATIPAVQKAGAEVAVAGGAIYGAADPAA 197
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A
{Streptococcus mutans} PDB: 3exs_A* 3ext_A
Length = 221
Score = 29.6 bits (66), Expect = 1.6
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 366 TPDDIAYVQEAGVKAVLVGESIVKQDDPGK 395
+ D + + V + G I + +P
Sbjct: 178 SVDTLKLFEGVDVFTFIAGRGITEAKNPAG 207
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF,
half barrel, de novo protein; 3.10A {Thermotoga
maritima} PDB: 2lle_A
Length = 237
Score = 29.4 bits (67), Expect = 1.8
Identities = 2/19 (10%), Positives = 7/19 (36%)
Query: 193 LREDFDPVEIARSYEKGGA 211
+ + + E Y++
Sbjct: 8 VDDATNGREAVEKYKELKP 26
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis,
lyase, phosphate-binding sites; 1.45A {Thermotoga
maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A
1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Length = 253
Score = 29.4 bits (67), Expect = 2.0
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 193 LREDFDPVEIARSYEKGGA 211
LR+ DPVE+ + Y + G
Sbjct: 26 LRDSGDPVELGKFYSEIGI 44
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, transferase; 2.30A {Thermus thermophilus}
SCOP: c.1.2.1
Length = 252
Score = 29.4 bits (67), Expect = 2.1
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 193 LREDFDPVEIARSYEKGGA 211
LR+ DPVE AR+Y++ GA
Sbjct: 27 LRDAGDPVEAARAYDEAGA 45
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum
aerophilum} SCOP: c.1.2.1
Length = 253
Score = 29.0 bits (66), Expect = 2.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 193 LREDFDPVEIARSYEKGGA 211
+RE DPVE+A YE+ GA
Sbjct: 29 IREVGDPVEMAVRYEEEGA 47
>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics,
PSI, protein structure initiative; 2.70A {Salmonella
typhimurium} SCOP: c.1.10.1
Length = 304
Score = 29.4 bits (65), Expect = 2.4
Identities = 39/269 (14%), Positives = 85/269 (31%), Gaps = 40/269 (14%)
Query: 147 LSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSY 206
+S+ + + A L A +QR + + A +P + DF V A+
Sbjct: 1 MSLNNYTIKDITRASGGFAML-AVDQREAMRLMFAAAGAKTPVADSVLTDF-KVNAAKIL 58
Query: 207 EKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLC--------------KEFIVDAW 252
+A +L D+++ + + C ++ +
Sbjct: 59 SPYASA---VLLDQQF---CYRQAVEQNAVAKSCAMIVAADDFIPGNGIPVDNVVLDKKI 112
Query: 253 QIYYARTKGADAVLLIAAVLPDLD-------IRYMTKICKLLGLTALVEV-------HDE 298
+ GA A+ L+ D D ++ ++C GL +++E D+
Sbjct: 113 NAQAVKRDGAKALKLLVLWRSDEDAQQRLNMVKEFNELCHSNGLLSIIEPVVRPPRCGDK 172
Query: 299 REMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIV 358
+ ++ + EL + + Y + +++L + I+
Sbjct: 173 FDREQAIIDAAKELGDSGADLYKVEMPLYGKGARSDLLTASQRLNGHINMPWV----ILS 228
Query: 359 VGESGLFTPDDIAYVQEAGVKAVLVGESI 387
G P + EAG L G ++
Sbjct: 229 SGVDEKLFPRAVRVAMEAGASGFLAGRAV 257
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 2.5
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 13/37 (35%)
Query: 137 EVTQLKQRRPL-SMLK-NALDNAPPARDFIGALMAAN 171
E LK+ L + LK A D+AP AL A
Sbjct: 18 EKQALKK---LQASLKLYADDSAP-------AL-AIK 43
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion
protein, cobalamin, precorrin, novel fold, VIT; 2.10A
{Thermotoga maritima}
Length = 266
Score = 29.1 bits (66), Expect = 2.6
Identities = 4/14 (28%), Positives = 5/14 (35%)
Query: 198 DPVEIARSYEKGGA 211
+ EK GA
Sbjct: 31 LLRDWVVEVEKRGA 44
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo
protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Length = 247
Score = 29.0 bits (66), Expect = 2.7
Identities = 4/14 (28%), Positives = 5/14 (35%)
Query: 198 DPVEIARSYEKGGA 211
+ EK GA
Sbjct: 36 LLRDWVVEVEKRGA 49
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
acyl-COA synthetase, xenobiotic/medium-chain FA COA
ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Length = 570
Score = 28.8 bits (65), Expect = 3.5
Identities = 8/36 (22%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 356 IIVVGESGLFTPDDIAY-VQEAGVKAVLVGESIVKQ 390
+I + + DI Y +Q + KA++ G+ ++++
Sbjct: 124 LIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQE 159
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis,
PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal
phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB:
2vd9_A* 3ha1_A*
Length = 391
Score = 28.4 bits (63), Expect = 4.7
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 12/47 (25%)
Query: 200 VEIARSYEKGGAACLSILTDEKYFKGSFENLEAV--RSAGVKCPLLC 244
V +A + GA L++ + EA+ R AG+ P+L
Sbjct: 52 VPVAXIALEAGATRLAVAFLD----------EALVLRRAGITAPILV 88
>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint
center for structural genomics, JCSG; HET: MSE; 1.40A
{Shewanella putrefaciens cn-32} PDB: 3gxg_A*
Length = 157
Score = 27.6 bits (61), Expect = 4.9
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 362 SGLFTPDDIAYVQEAGVKAVL 382
SGL + +++AGV V+
Sbjct: 25 SGLPNEQQFSLLKQAGVDVVI 45
>3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans;
5-methyltetrahydrofolate,methyltransferase, TIM barrel,
STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A
{Bacteroides thetaiotaomicron}
Length = 300
Score = 28.0 bits (63), Expect = 5.1
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Query: 192 ILREDFDP-VEIARSYEKGGAACLSI-----LTDEKYFKGSFENLEAVRSAGVKCPL 242
+ + +D + IAR + GA + + L D + +F NL + P+
Sbjct: 31 VNEKKYDEALSIARQQVEDGALVIDVNMDDGLLDARTEMTTFLNLIMSEPEIARVPV 87
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal
phosphate, structural genomi NPPSFA; 2.30A
{Methanocaldococcus jannaschii}
Length = 330
Score = 27.8 bits (61), Expect = 5.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 356 IIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGK 395
++ G+ TP D A + + G V VG I K ++P +
Sbjct: 243 VVNFAAGGVATPADAALMMQLGSDGVFVGSGIFKSENPLE 282
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal
phosphate, structural PSI, protein structure initiative;
HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB:
1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Length = 406
Score = 27.8 bits (63), Expect = 6.1
Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 17/67 (25%)
Query: 262 ADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDERE-----MDRVLGIEGIELIGIN 316
+ L AA + Y++ + GL + + E+ + ++ + + L G
Sbjct: 282 GGIIGLGAA------LEYVSAL----GLNN-IAEY-EQNLMHYALSQLESVPDLTLYGPQ 329
Query: 317 NRNLAIS 323
NR I+
Sbjct: 330 NRLGVIA 336
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin
biosynthesis, TIM barrel, transferase; 2.35A
{Mycobacterium tuberculosis}
Length = 243
Score = 27.6 bits (62), Expect = 6.4
Identities = 36/215 (16%), Positives = 66/215 (30%), Gaps = 37/215 (17%)
Query: 194 REDFDPVEIARSYEKGGAACLSI---LTDEKYFKGSFENLEAVRSAGVKCPLLCKE---- 246
RE D + A + GG + + + + G + + + +
Sbjct: 40 RERGDLAQFAEAALAGGVDIIQLRDKGSPGELRFGPLQARDELAAC-EILADAAHRYGAL 98
Query: 247 FIV-DAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVL 305
F V D I AR GAD + L LP R + L+G + HD ++
Sbjct: 99 FAVNDRADI--ARAAGADVLHLGQRDLPVNVARQILAPDTLIGRST----HDPDQVAAAA 152
Query: 306 GIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLF 365
+ + + + TK ++R + + F
Sbjct: 153 A-GDADYFCVG------PCWP----------TPTKPGRAAPGLGLVRVAAELGGDDKPWF 195
Query: 366 -----TPDDIAYVQEAGVKAVLVGESIVKQDDPGK 395
+ V +AG + ++V +I DDP
Sbjct: 196 AIGGINAQRLPAVLDAGARRIVVVRAITSADDPRA 230
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG,
thermus thermophilus HB8, structural genomics, NPPSFA;
2.30A {Thermus thermophilus}
Length = 268
Score = 27.6 bits (62), Expect = 7.4
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 350 IIRQK--NIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDP 393
R+K VV ++GL P A V E G+ AVLV +I + DP
Sbjct: 171 FAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNTAIAEAQDP 216
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosph; HET:
PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A*
Length = 371
Score = 27.8 bits (63), Expect = 7.7
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 12/47 (25%)
Query: 200 VEIARSYEKGGAACLSILTDEKYFKGSFENLEAV--RSAGVKCPLLC 244
VE A++ +KGGA + + EA+ R AGV+ P+L
Sbjct: 49 VESAKAAKKGGATGFCVALLD----------EAIELREAGVQDPILI 85
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 27.6 bits (61), Expect = 8.5
Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 4/54 (7%)
Query: 211 AACLSILTDEKYFKGSFEN----LEAVRSAGVKCPLLCKEFIVDAWQIYYARTK 260
A D+++ G+ L+ + K +L I Y +K
Sbjct: 54 AGVNRPEHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQDNPYGESK 107
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate
pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2
PDB: 1h1z_A
Length = 228
Score = 27.1 bits (61), Expect = 8.7
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 366 TPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 400
P I AG ++ G SI +PG+ I+ L
Sbjct: 183 GPSTIDVAASAGANCIVAGSSIFGAAEPGEVISAL 217
>2vun_A Enamidase; nicotinate degradation, binuclear metal center,
amidohydrolases, stereospecificity, hydrolase; 1.89A
{Eubacterium barkeri}
Length = 386
Score = 27.6 bits (61), Expect = 9.2
Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
Query: 288 GLTALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDN--SNTKKLLEG 345
G+T ++ R G + + L+ S ++ R +V +K L
Sbjct: 92 GVTTMISAGSPHFPGRPKDAAGTKALA---ITLSKSYYNARPAGVKVHGGAVILEKGLTE 148
Query: 346 ERGEIIRQKNIIVVGE---SGLFTPDD-IAYVQEA 376
E ++++ + +VGE + P+D V+ A
Sbjct: 149 EDFIEMKKEGVWIVGEVGLGTIKNPEDAAPMVEWA 183
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.390
Gapped
Lambda K H
0.267 0.0841 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,331,587
Number of extensions: 404559
Number of successful extensions: 1162
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1106
Number of HSP's successfully gapped: 86
Length of query: 407
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 311
Effective length of database: 4,021,377
Effective search space: 1250648247
Effective search space used: 1250648247
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (25.9 bits)