RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 015424
(407 letters)
>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
{Thermus thermophilus [TaxId: 274]}
Length = 254
Score = 192 bits (490), Expect = 8e-60
Identities = 96/287 (33%), Positives = 144/287 (50%), Gaps = 33/287 (11%)
Query: 116 IQNEGNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTG 175
++ + + +L EI + EV P P F AL+
Sbjct: 1 MRPDLSRVPGVLGEIARKRASEVAPYPLPEP-----------PSVPSFKEALLRPG---- 45
Query: 176 LPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRS 235
++IAEVK+ SPS G++R + DPVE A +Y +GGA +S+LT+ F GS +L+ VR
Sbjct: 46 -LSVIAEVKRQSPSEGLIR-EVDPVEAALAYARGGARAVSVLTEPHRFGGSLLDLKRVRE 103
Query: 236 AGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEV 295
A V PLL K+F+VD + + AR GA A LLI A+L +L Y+ + + LGL ALVEV
Sbjct: 104 A-VDLPLLRKDFVVDPFMLEEARAFGASAALLIVALLGELTGAYL-EEARRLGLEALVEV 161
Query: 296 HDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKN 355
H ERE++ G E++GINNR+L T ++ +L R R
Sbjct: 162 HTERELEIA-LEAGAEVLGINNRDL---------ATLHINLETAPRLGRLAR---KRGFG 208
Query: 356 IIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 402
++V ESG +++ + E AVL+G S+++ D + L G
Sbjct: 209 GVLVAESGYSRKEELKAL-EGLFDAVLIGTSLMRAPDLEAALRELVG 254
>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
{Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 176 bits (448), Expect = 1e-53
Identities = 78/275 (28%), Positives = 131/275 (47%), Gaps = 30/275 (10%)
Query: 127 LEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKA 186
L EIV K ++ ++ + +N F+ L + +IAE KKA
Sbjct: 3 LWEIVEAKKKDILEIDGENLIVQRRN--------HRFLEVLSGKER----VKIIAEFKKA 50
Query: 187 SPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKE 246
SPS G + D + R Y++ A SILT++ YFKG + A R+ P+L K+
Sbjct: 51 SPSAGDINADASLEDFIRMYDELADAI-SILTEKHYFKGDPAFVRAARNL-TCRPILAKD 108
Query: 247 FIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLG 306
F +D Q+ A + GADA+L+IA +L I+ + + + LG+ +LVEVH ++++V
Sbjct: 109 FYIDTVQVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSREDLEKVFS 168
Query: 307 IEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFT 366
+ ++IGIN R+L + + +VV ESG+
Sbjct: 169 VIRPKIIGINTRDLDTFEIKKNV---------------LWELLPLVPDDTVVVAESGIKD 213
Query: 367 PDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 401
P ++ ++ V AVLVG SI+K ++P + + +
Sbjct: 214 PRELKDLR-GKVNAVLVGTSIMKAENPRRFLEEMR 247
>d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS
{Escherichia coli [TaxId: 562]}
Length = 254
Score = 166 bits (422), Expect = 9e-50
Identities = 93/277 (33%), Positives = 144/277 (51%), Gaps = 26/277 (9%)
Query: 124 RNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEV 183
+ +L +IV K + V KQ++PL+ +N + P R F AL + A I E
Sbjct: 2 QTVLAKIVADKAIWVEARKQQQPLASFQNEV--QPSTRHFYDAL-----QGARTAFILEC 54
Query: 184 KKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL 243
KKASPS+G++R+DFDP I + K A+ +S+LTDEKYF+GSF L V P+L
Sbjct: 55 KKASPSKGVIRDDFDPARI-AAIYKHYASAISVLTDEKYFQGSFNFLPIVSQ-IAPQPIL 112
Query: 244 CKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDR 303
CK+FI+D +QIY AR ADA LL+ +VL D R + + L + L EV +E E +R
Sbjct: 113 CKDFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQER 172
Query: 304 VLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESG 363
+ + +++GINNR+L +D + T++L N+ V+ ESG
Sbjct: 173 AIALG-AKVVGINNRDL---------RDLSIDLNRTRELAP------KLGHNVTVISESG 216
Query: 364 LFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 400
+ T + + L+G +++ DD + +
Sbjct: 217 INTYAQVREL-SHFANGFLIGSALMAHDDLHAAVRRV 252
>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 247
Score = 166 bits (420), Expect = 2e-49
Identities = 93/273 (34%), Positives = 143/273 (52%), Gaps = 30/273 (10%)
Query: 123 PRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAE 182
PR L+ W KDV QL RRP P ++ N + + A+IAE
Sbjct: 1 PR-YLKG--WLKDVV--QLSLRRPSFRASRQR----PIISLNERILEFN-KRNITAIIAE 50
Query: 183 VKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPL 242
K+ SPS + DP+E ++ E+ A LSILT+EKYF GS+E L + S V P+
Sbjct: 51 YKRKSPSGLD--VERDPIEYSKFMERY-AVGLSILTEEKYFNGSYETLRKIAS-SVSIPI 106
Query: 243 LCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMD 302
L K+FIV QI A GAD VLLI +L + ++ + + + G+ L+E++DE ++D
Sbjct: 107 LMKDFIVKESQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLIEINDENDLD 166
Query: 303 RVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGES 362
L I G IGIN+R+L ET E++ N +KL+ + N++ V ES
Sbjct: 167 IALRI-GARFIGINSRDL---------ETLEINKENQRKLIS------MIPSNVVKVAES 210
Query: 363 GLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGK 395
G+ ++I +++ GV A L+G S+++ + K
Sbjct: 211 GISERNEIEELRKLGVNAFLIGSSLMRNPEKIK 243
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}
Length = 230
Score = 77.6 bits (190), Expect = 4e-17
Identities = 25/222 (11%), Positives = 65/222 (29%), Gaps = 24/222 (10%)
Query: 179 LIAEVKKASPSRGILREDFDPV-EIARSYEKGGAACLSI--LTDEKYFKGSFENLEAVRS 235
+I + A P + E + +A++ ++ GA + + D K + +
Sbjct: 15 IIVSCQ-ALPGEPLYSETGGIMPLMAKAAQEAGAVGIRANSVRDIKEIQAITDLPIIGII 73
Query: 236 AGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLL-----GLT 290
P ++ + + D + + +
Sbjct: 74 K-KDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQL 132
Query: 291 ALVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEI 350
+ ++ E GI+ +G + E
Sbjct: 133 LMADISTFDEGLVAHQA-GIDFVGTTLSGYTPYSRQEAGPDVALI-------------EA 178
Query: 351 IRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD 392
+ + I V+ E + +P++ + + GV ++VG +I + +
Sbjct: 179 LCKAGIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAITRPKE 220
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}
Length = 222
Score = 74.5 bits (182), Expect = 5e-16
Identities = 29/226 (12%), Positives = 71/226 (31%), Gaps = 32/226 (14%)
Query: 179 LIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSA-G 237
LI + + L F ++A + +GGA + + E++ A++
Sbjct: 7 LIVSCQ--ALPDEPLHSSFIMSKMALAAYEGGAVGIRA--------NTKEDILAIKETVD 56
Query: 238 VKCPLLCKEFIVDAWQIYYARTK--------GADAVLLIAAVLP--DLDIRYMTKICKLL 287
+ + K + A +K + + L A + + + +
Sbjct: 57 LPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTH 116
Query: 288 GLTALVEVHDEREMDRVLGIE-GIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGE 346
+ + G + IG ++ + +
Sbjct: 117 APNVEIMADIATVEEAKNAARLGFDYIGTTLHGY---------TSYTQGQLLYQNDFQFL 167
Query: 347 RGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD 392
+ ++++ + V+ E + TPD V + GV +VG +I + +
Sbjct: 168 K-DVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAITRPKE 212
>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase
{Streptococcus pyogenes [TaxId: 1314]}
Length = 217
Score = 43.5 bits (102), Expect = 2e-05
Identities = 34/225 (15%), Positives = 64/225 (28%), Gaps = 24/225 (10%)
Query: 185 KASPSRGILREDFDPV-EIARSYEKGGAACLSI-LTDEKYFKGSFENLEAVRS--AGVKC 240
K +PS IL D+ E+ A + I + D ++ + V S K
Sbjct: 3 KIAPS--ILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKL 60
Query: 241 PLLCKEFIVDAW-QIYYARTKGADAVLLIAAVLPDLDIRYMTKICKL---LGLTALVEVH 296
C +VD + GAD + + + + KI G+
Sbjct: 61 VFDCHLMVVDPERYVEAFAQAGADIMTIHTESTRHIH-GALQKIKAAGMKAGVVINPGTP 119
Query: 297 DEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNI 356
+ ++ + ++ +N + E + +K +
Sbjct: 120 ATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVA------------TVAKWRDEKGL 167
Query: 357 -IVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 400
+ G I EAG + G + K D + L
Sbjct: 168 SFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTL 212
>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermotoga
maritima [TaxId: 2336]}
Length = 253
Score = 42.9 bits (100), Expect = 3e-05
Identities = 40/205 (19%), Positives = 66/205 (32%), Gaps = 13/205 (6%)
Query: 193 LREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPL--LCKEFIVD 250
LR+ DPVE+ + Y + G L L + LE V + + I D
Sbjct: 26 LRDSGDPVELGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHD 85
Query: 251 AWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGI 310
+GAD V + A + + + +T+I + G A+V D + +D +
Sbjct: 86 FETASELILRGADKVSINTAAVENPSL--ITQIAQTFGSQAVVVAIDAKRVDGE-FMVFT 142
Query: 311 ELIGINNRNLAISIFSYRTETFE-------VDNSNTKKLLEGERGEIIRQKNIIVVGESG 363
N L + +D TK + E +R + + SG
Sbjct: 143 YSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASG 202
Query: 364 LF-TPDDIAYVQEAGVKAVLVGESI 387
+ AG A L
Sbjct: 203 GAGKMEHFLEAFLAGADAALAASVF 227
>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermus
thermophilus [TaxId: 274]}
Length = 251
Score = 42.0 bits (98), Expect = 6e-05
Identities = 39/203 (19%), Positives = 67/203 (33%), Gaps = 9/203 (4%)
Query: 193 LREDFDPVEIARSYEKGGAACLSIL--TDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVD 250
LR+ DPVE AR+Y++ GA L L + + ++ A + V PL +
Sbjct: 26 LRDAGDPVEAARAYDEAGADELVFLDISATHEERAILLDVVARVAERVFIPLTVGGGVRS 85
Query: 251 AWQIYYARTKGADAVLL--IAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIE 308
GAD V + A P+L IR + + ++ + V
Sbjct: 86 LEDARKLLLSGADKVSVNSAAVRRPEL-IRELADHFGAQAVVLAIDARWRGDFPEVHVAG 144
Query: 309 GIELIGINNRNLAISIFSYRTETF---EVDNSNTKK-LLEGERGEIIRQKNIIVVGESGL 364
G G++ A+ +D TK+ + + V+ G
Sbjct: 145 GRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGA 204
Query: 365 FTPDDIAYVQEAGVKAVLVGESI 387
+ +AG +A L
Sbjct: 205 GRMEHFLEAFQAGAEAALAASVF 227
>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus
woesei [TaxId: 2262]}
Length = 224
Score = 38.5 bits (88), Expect = 7e-04
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 354 KNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 400
+ V+ +G+ T +D+ E G VL+ + K DP K I L
Sbjct: 174 PEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKAKDPEKAIWDL 220
>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax
[TaxId: 2271]}
Length = 226
Score = 37.6 bits (86), Expect = 0.002
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 354 KNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGI 397
+ V+ +G+ + DD+A G + VL+ + VK DP I
Sbjct: 172 PEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAKDPYAKI 215
>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 243
Score = 36.0 bits (83), Expect = 0.004
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 350 IIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDP 393
I+ + + V+ ++G+ T D A E G +AVL+ +I DP
Sbjct: 174 ILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDP 217
Score = 26.8 bits (59), Expect = 3.9
Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Query: 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEA--VRSAGVKCPLLCKEFIVDAWQIY 255
DP+ IAR + G + L N + K P+L + A
Sbjct: 137 DPI-IARQLAEIGCIAVMPLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAA 195
Query: 256 YARTKGADAVLLIAAV 271
A G +AVL+ A+
Sbjct: 196 IAMELGCEAVLMNTAI 211
>d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 254
Score = 35.5 bits (82), Expect = 0.007
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 349 EIIRQKNIIVV--GESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGK 395
EI R + VV G+ TP D A + G V VG I K ++P K
Sbjct: 181 EIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEK 229
>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus
subtilis [TaxId: 1423]}
Length = 251
Score = 35.2 bits (81), Expect = 0.009
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 337 SNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDP 393
S L II Q + V+ ++G+ +P D AY E G VL+ ++ DDP
Sbjct: 159 SGQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGADDP 215
>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium
falciparum [TaxId: 5833]}
Length = 221
Score = 34.4 bits (78), Expect = 0.016
Identities = 28/224 (12%), Positives = 61/224 (27%), Gaps = 25/224 (11%)
Query: 187 SPSRGILREDFDPV--EIARSYEKGGAACLSI-LTDEKYFKG---SFENLEAVRSAGVKC 240
+PS +L + + E R E GA + + + D + + ++
Sbjct: 6 APS--VLASNISKLAEETQR-MESLGAEWIHLDVMDMHFVPNLSFGPPVINNLKKYTKSI 62
Query: 241 PLLC-KEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALV---EVH 296
+ +T A + K + L +
Sbjct: 63 FFDVHLMVEYPEKYVPLLKTSNQLTFHFEALNEDTERCIQLAKEIRDNNLWCGISIKPKT 122
Query: 297 DEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNI 356
D +++ +L I + + S+ + + KN+
Sbjct: 123 DVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGK-----------VSFLRKKYKNL 171
Query: 357 IVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 400
+ + GL + G ++ G SI +DP I +
Sbjct: 172 NIQVDGGL-NIETTEISASHGANIIVAGTSIFNAEDPKYVIDTM 214
>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 252
Score = 32.7 bits (74), Expect = 0.057
Identities = 39/199 (19%), Positives = 67/199 (33%), Gaps = 7/199 (3%)
Query: 193 LREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVK--CPLLCKEFIVD 250
+RE DPVE+A YE+ GA ++IL +G +++V+ P+L +
Sbjct: 28 IREVGDPVEMAVRYEEEGADEIAILDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRS 87
Query: 251 AWQIYYARTKGADAVLLIAAVLPD-LDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEG 309
GAD V + A + + + + + ++ E V G
Sbjct: 88 LEDATTLFRAGADKVSVNTAAVRNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGG 147
Query: 310 IELIGINNRNLAISIFSYRTETF---EVDNSNTKKLLEGERGEIIRQK-NIIVVGESGLF 365
E G++ A + +D T + E + I V+ G
Sbjct: 148 REATGLDAVKWAKEVEELGAGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAG 207
Query: 366 TPDDIAYVQEAGVKAVLVG 384
+ AG AVL
Sbjct: 208 RVEHFYEAAAAGADAVLAA 226
>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase
{Escherichia coli [TaxId: 562]}
Length = 213
Score = 31.7 bits (71), Expect = 0.10
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 357 IVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGI 397
V +G +D+ + + + G SI P +
Sbjct: 162 FKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDAASPVEAA 202
>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole
carboxamide ribotite isomerase HisA {Thermotoga maritima
[TaxId: 2336]}
Length = 241
Score = 31.5 bits (70), Expect = 0.13
Identities = 21/202 (10%), Positives = 51/202 (25%), Gaps = 18/202 (8%)
Query: 198 DPVEIARSYEKGGAACLSILT-DEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYY 256
DPVE+ + G + ++ + + + I
Sbjct: 31 DPVELVEKLIEEGFTLIHVVDLSNAIENSGENLPVLEKLSEFAEHIQIGGGIRSLDYAEK 90
Query: 257 ARTKGADAVLLIAAVLPDLDIRYM-----TKICKLLGLTALVEVHDEREMDRVLGIEGIE 311
R G ++ + VL D + L + + +
Sbjct: 91 LRKLGYRRQIVSSKVLEDPSFLKSLREIDVEPVFSLDTRGGRVAFKGWLAEEEIDPVSLL 150
Query: 312 LIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIA 371
I + ++ + E+ ++ G G+ + + +
Sbjct: 151 KRLKEYGLEEIVHTEIEKDGTLQEHDFSLTKKIAIEAEV----KVLAAG--GISSENSLK 204
Query: 372 YVQEAG------VKAVLVGESI 387
Q+ +K V+VG +
Sbjct: 205 TAQKVHTETNGLLKGVIVGRAF 226
>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole
carboxamide ribotite isomerase HisA {Streptomyces
coelicolor [TaxId: 1902]}
Length = 239
Score = 31.1 bits (69), Expect = 0.17
Identities = 36/198 (18%), Positives = 70/198 (35%), Gaps = 13/198 (6%)
Query: 198 DPVEIARSYEKGGAACLSIL-TDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYY 256
P+E A ++++ GA L ++ D + G L A + + + I D +
Sbjct: 32 SPLEAALAWQRSGAEWLHLVDLDAAFGTGDNRALIAEVAQAMDIKVELSGGIRDDDTLAA 91
Query: 257 ARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGIN 316
A G V L A + + K++ L G G +
Sbjct: 92 ALATGCTRVNLGTAA-----LETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGD 146
Query: 317 NRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQK----NIIVVGESGLFTPDDI-- 370
+ + V + L+G E+++ + VV G+ + DD+
Sbjct: 147 LYETLDRLNKEGCARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRA 206
Query: 371 -AYVQEAGVKAVLVGESI 387
A + AGV+ +VG+++
Sbjct: 207 IAGLVPAGVEGAIVGKAL 224
>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon
(Pyrococcus furiosus) [TaxId: 2261]}
Length = 206
Score = 30.6 bits (68), Expect = 0.22
Identities = 29/193 (15%), Positives = 58/193 (30%), Gaps = 19/193 (9%)
Query: 214 LSILTDEKYFKGSFENLEAVRSAGVKCPLL------CKEFIVDAWQIYYARTKGADAVLL 267
L ++TD + K E++ G + +E T+ DA+
Sbjct: 8 LYVITDRR-LKPEVESVREALEGGATAIQMRIKNAPTREMYEIGKT-LRQLTREYDALFF 65
Query: 268 IA-----AVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLAI 322
+ A+ D D + + + + + E +E L
Sbjct: 66 VDDRVDVALAVDADGVQLGPEDMPIEVAKEIAPNLIIGASVYSLEEALEAEKKGADYLGA 125
Query: 323 SIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVL 382
+ + L +I+ I VV G+ D+ V + GV +
Sbjct: 126 GSVFPTKTKEDARVIGLEGL-----RKIVESVKIPVVAIGGI-NKDNAREVLKTGVDGIA 179
Query: 383 VGESIVKQDDPGK 395
V +++ +D K
Sbjct: 180 VISAVMGAEDVRK 192
>d1dq3a3 d.95.2.2 (A:129-226) PI-Pfui intein {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 98
Score = 29.5 bits (66), Expect = 0.23
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 322 ISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNI 356
+ I+ YR ETFE+ N +K G + I + +NI
Sbjct: 41 LRIYDYRIETFEIINDYLEKTF-GRKYSIQKDRNI 74
>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase
{Synechocystis sp. PCC 6803 [TaxId: 1148]}
Length = 221
Score = 30.5 bits (68), Expect = 0.25
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 366 TPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 400
P++ V EAG A++ G ++ + + I G+
Sbjct: 181 KPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGV 215
>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice
(Oryza sativa) [TaxId: 4530]}
Length = 220
Score = 30.6 bits (68), Expect = 0.27
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 366 TPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 400
P I AG ++ G SI +PG+ I+ L
Sbjct: 178 GPSTIDVAASAGANCIVAGSSIFGAAEPGEVISAL 212
>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 230
Score = 30.0 bits (67), Expect = 0.41
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 366 TPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 400
P + V EAG A++ G ++ D + I G+
Sbjct: 189 GPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGI 223
>d1nx4a_ b.82.2.8 (A:) Carbapenem synthase, CarC {Erwinia carotovora
[TaxId: 554]}
Length = 271
Score = 29.7 bits (66), Expect = 0.55
Identities = 10/91 (10%), Positives = 24/91 (26%), Gaps = 5/91 (5%)
Query: 95 KIRRRPPTGPPLHYVGPFQFRIQNEGNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNAL 154
I + + +++ E ++ +H D L + L A
Sbjct: 62 TIVEYADEKIGVGFGYRDTLKLEGEKGKIVTGRGQLPFHAD--GGLLLSQVDQVFLY-AA 118
Query: 155 DNAPPARDFIGALMAANQRTGLPALIAEVKK 185
+ GA + + A + +
Sbjct: 119 EIKNVKFR--GATTVCDHALACQEMPAHLLR 147
>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c
{Streptococcus mutans [TaxId: 1309]}
Length = 253
Score = 28.5 bits (62), Expect = 1.5
Identities = 13/92 (14%), Positives = 31/92 (33%), Gaps = 4/92 (4%)
Query: 301 MDRVLGIEGIELIGINNRNLAISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVG 360
D + E L G + + R + + + + +++ I+VG
Sbjct: 146 PDLNIPTERGLLPGAGAIL-FLLEKATRVKPIIIGKPEAVIMNKALDRLGVKRHEAIMVG 204
Query: 361 ESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD 392
++ DI + + +LV K ++
Sbjct: 205 DN---YLTDITAGIKNDIATLLVTTGFTKPEE 233
>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays)
[TaxId: 4577]}
Length = 261
Score = 26.7 bits (58), Expect = 4.7
Identities = 9/38 (23%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 353 QKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 390
K + V G+ P+ + + + G V++G ++V+Q
Sbjct: 200 NKPVAV--GFGISKPEHVKQIAQWGADGVIIGSAMVRQ 235
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain
4 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 312
Score = 26.9 bits (58), Expect = 5.5
Identities = 5/38 (13%), Positives = 14/38 (36%)
Query: 354 KNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 391
++ G+ + + +G + V ++ QD
Sbjct: 254 PGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQD 291
>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 248
Score = 26.7 bits (58), Expect = 5.5
Identities = 18/175 (10%), Positives = 52/175 (29%), Gaps = 18/175 (10%)
Query: 222 YFKGSFENLEAVRSAGVKCPLL---CKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIR 278
+ +F ++ R +L + + A K + ++ LP +
Sbjct: 64 KLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAK 123
Query: 279 YMTKICKLLGLTA---LVEVHDEREMDRVLGIEGIELIGINNRNLAISIFSYRTETFEVD 335
T+I + G+ + + + + + ++ + +++
Sbjct: 124 EFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLL 183
Query: 336 NSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 390
+ V G+ + + + + G V+VG ++VK
Sbjct: 184 RRAKR------------ICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKI 226
>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 267
Score = 26.4 bits (57), Expect = 6.2
Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 7/84 (8%)
Query: 322 ISIFSYRTETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAV 381
+ S T + E+ + + G+ +P+ ++ AG
Sbjct: 174 TYLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQ--GFGISSPEQVSAAVRAGAAGA 231
Query: 382 LVGESIVKQ-----DDPGKGITGL 400
+ G +IVK P + + L
Sbjct: 232 ISGSAIVKIIEKNLASPKQMLAEL 255
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.390
Gapped
Lambda K H
0.267 0.0554 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,486,114
Number of extensions: 71307
Number of successful extensions: 242
Number of sequences better than 10.0: 1
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 36
Length of query: 407
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 320
Effective length of database: 1,213,086
Effective search space: 388187520
Effective search space used: 388187520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.0 bits)