BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015426
(407 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7Z569|BRAP_HUMAN BRCA1-associated protein OS=Homo sapiens GN=BRAP PE=1 SV=2
Length = 592
Score = 283 bits (723), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 161/413 (38%), Positives = 240/413 (58%), Gaps = 49/413 (11%)
Query: 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFNSLE 60
MT D +F A F + I +M+I+R D +QY VLI+F +Q AD FY NGRQFNS+E
Sbjct: 172 MTSHDLMKFVAPFNEVIEQMKIIR-DSTPNQYMVLIKFRAQADADSFYMTCNGRQFNSIE 230
Query: 61 EEVCHVLFTVDVQFTGYTGSLEHVQPAPASSTEQPSCPVCLERLDQDTSGILTTICNHSF 120
++VC +++ V+ S + TE P C VCLER+D+ +GILTT+CNHSF
Sbjct: 231 DDVCQLVY---VERAEVLKSEDGASLPVMDLTELPKCTVCLERMDESVNGILTTLCNHSF 287
Query: 121 HCSCISKWTDSSCPVCRYCQ-QQP-EKSICFVCQTSENLWMCVICGFVGCGRYKGGHAII 178
H C+ +W D++CPVCRYCQ +P E++ CF C ENLW+C+ICG +GCGRY HA
Sbjct: 288 HSQCLQRWDDTTCPVCRYCQTPEPVEENKCFECGVQENLWICLICGHIGCGRYVSRHAYK 347
Query: 179 HWKETEHCYSLELETQRVWDYAGDNYVHRLIQSKTDGKLVELNSHCLHGKDNCGSCDCVD 238
H++ET+H Y+++L RVWDYAGDNYVHRL+ SKTDGK+V+ C+
Sbjct: 348 HFEETQHTYAMQLTNHRVWDYAGDNYVHRLVASKTDGKIVQY------------ECE--- 392
Query: 239 SGTSDALLSSKVEAIVNEYNELLAAQLENQKIYYET-LLQEAKEETEKIISEAVK-KAIA 296
D K++A+ EY+ LL +QLE+Q+IY+E +++ K+ E+I + K K
Sbjct: 393 ---GDTCQEEKIDALQLEYSYLLTSQLESQRIYWENKIVRIEKDTAEEINNMKTKFKETI 449
Query: 297 QKLQKMQAKLDRCVREKKFLD---------------------DLNENLLKNQEMWKAKIS 335
+K ++ KL+ ++EK+ ++ ++N+ L NQ + + K+
Sbjct: 450 EKCDNLEHKLNDLLKEKQSVERKCTQLNTKVAKLTNELKEEQEMNKCLRANQVLLQNKLK 509
Query: 336 EIEEREKMALRAKDDKIQDSEAQLRDLMAYLEAEKTLQQLS--ISNEIKDGTV 386
E E K KD +I + + QLRD+M YLE ++ + L EI++G +
Sbjct: 510 EEERVLKETCDQKDLQITEIQEQLRDVMFYLETQQKINHLPAETRQEIQEGQI 562
>sp|Q99MP8|BRAP_MOUSE BRCA1-associated protein OS=Mus musculus GN=Brap PE=1 SV=1
Length = 591
Score = 281 bits (718), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 165/434 (38%), Positives = 251/434 (57%), Gaps = 50/434 (11%)
Query: 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFNSLE 60
MT D +F A F I +M+I+R D +QY VLI+F +Q AD FY NGRQFNS+E
Sbjct: 171 MTSHDLMKFVAPFNDVIEQMKIIR-DSTPNQYMVLIKFSAQADADSFYMACNGRQFNSIE 229
Query: 61 EEVCHVLFTVDVQFTGYTGSLEHVQPAPASSTEQPSCPVCLERLDQDTSGILTTICNHSF 120
++VC +++ V+ S + TE P C VCLER+D+ +GILTT+CNHSF
Sbjct: 230 DDVCQLVY---VERAEVLKSEDGASLPVMDLTELPKCTVCLERMDESVNGILTTLCNHSF 286
Query: 121 HCSCISKWTDSSCPVCRYCQ-QQP-EKSICFVCQTSENLWMCVICGFVGCGRYKGGHAII 178
H C+ +W D++CPVCRYCQ +P E++ CF C ENLW+C+ICG +GCGRY HA
Sbjct: 287 HSQCLQRWDDTTCPVCRYCQTPEPVEENKCFECGVQENLWICLICGHIGCGRYVSRHAYK 346
Query: 179 HWKETEHCYSLELETQRVWDYAGDNYVHRLIQSKTDGKLVELNSHCLHGKDNCGSCDCVD 238
H++ET+H Y+++L RVWDYAGDNYVHRL+ SKTDGK+V+ C+
Sbjct: 347 HFEETQHTYAMQLTNHRVWDYAGDNYVHRLVASKTDGKIVQYE------------CE--- 391
Query: 239 SGTSDALLSSKVEAIVNEYNELLAAQLENQKIYYET-LLQEAKEETEKIISEAVK-KAIA 296
D K++A+ EY+ LL +QLE+Q+IY+E +++ K+ E+I + K K
Sbjct: 392 ---GDTCQEEKIDALQLEYSYLLTSQLESQRIYWENKIVRIEKDTAEEINNMKTKFKETI 448
Query: 297 QKLQKMQAKLDRCVREKKFLD---------------------DLNENLLKNQEMWKAKIS 335
+K ++ +L ++EK+ ++ +LN+ L NQ + + ++
Sbjct: 449 EKCDSLELRLSDLLKEKQSVERKCTQLNTRVAKLSTELQEEQELNKCLRANQLVLQNQLK 508
Query: 336 EIEEREKMALRAKDDKIQDSEAQLRDLMAYLEAEKTLQQLS--ISNEIKDGTVLPMSVES 393
E E+ K KD +I + + QLRD+M YLE ++ + L EI++G + +++ S
Sbjct: 509 EEEKLLKETCAQKDLQITEIQEQLRDVMFYLETQQQISHLPAETRQEIQEGQI-NIAMAS 567
Query: 394 STSTGTKGKGKKIQ 407
+ + + G G K+Q
Sbjct: 568 APNPPSSGAGGKLQ 581
>sp|O13747|EPT1_SCHPO RING finger protein ETP1 homolog OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC16E8.13 PE=3 SV=1
Length = 547
Score = 251 bits (642), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 159/417 (38%), Positives = 239/417 (57%), Gaps = 58/417 (13%)
Query: 14 IQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFNSLEEEVCHVLFT--VD 71
IQHI R+++T ++ L++F Q S +FY FNG+ F+ ++ E CHVL V+
Sbjct: 115 IQHI---RLLKTKD-PNRIMALLKFKDQASVIRFYTEFNGKAFSQIDPETCHVLHIDKVN 170
Query: 72 VQF---TGYTGSLEH--VQPA--PASST-----EQPSCPVCLERLDQDTSGILTTICNHS 119
+++ + + S E V P+ P +ST E P+C VCLER+D +G++T +C H+
Sbjct: 171 IKYPMESSDSSSTEQQLVGPSSKPFASTTPALIELPTCVVCLERMDSSITGLITIVCQHT 230
Query: 120 FHCSCISKWTDSSCPVCRYCQ--QQPE-KSICFVCQTSENLWMCVICGFVGCGRYKGGHA 176
FHC C+ KW +SSCPVCRY Q Q E +S C VC ++LW+C+ICG +GCGRY HA
Sbjct: 231 FHCPCLQKWGNSSCPVCRYTQKVQSSEFQSKCTVCCYDKDLWICLICGNIGCGRYHDAHA 290
Query: 177 IIHWKETEHCYSLELETQRVWDYAGDNYVHRLIQSKTDGKLVELNSHCLHGKDNCGSCDC 236
H+ +T HCY++ELETQRVWDYAGDNYVHRL+QS+TDGKLVEL++ GK S
Sbjct: 291 KQHYVDTAHCYAMELETQRVWDYAGDNYVHRLLQSETDGKLVELST---DGK----SSGW 343
Query: 237 VDSGTSDALLSSKVEAIVNEYNELLAAQLENQKIYYETLLQEAKEETEKIISEAVKK--- 293
S +++ L K+ EY ++L +QLE+Q++YYE+ L ++ ++ E V K
Sbjct: 344 TGSSATESKLRDKMGL---EYTQILVSQLESQRLYYESHLSNMSQKLSRVNEELVLKTKI 400
Query: 294 --AIAQKLQKMQAKLDRCVREKKF-------------LDDLNENLLKNQEMWKAKISEIE 338
A + +++++D + E K L+ L N + + M + + I+
Sbjct: 401 ATASSNANTDLRSRVD--ISESKLKKRDDKLKRVSSQLEHLKHNYEEEKSMNENLLVRIQ 458
Query: 339 EREKMALRAKDD------KIQDSEAQLRDLMAYLEAEKTLQQLSISNEIKDGT-VLP 388
EK D +I D QLRDLM + A + +Q++ S E+++GT VLP
Sbjct: 459 TLEKQNTTKSDQIVSMQFQINDLNEQLRDLMFTISASQEIQKMGQSEELQNGTIVLP 515
>sp|P38748|ETP1_YEAST RING finger protein ETP1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ETP1 PE=1 SV=1
Length = 585
Score = 237 bits (604), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 148/426 (34%), Positives = 231/426 (54%), Gaps = 59/426 (13%)
Query: 15 QHILEMRIVRTD--GMDDQYSVLIRFDSQDSADKFYQHFNGRQFNSLEEEVCHVLFTVDV 72
+ + RI+R GM ++VLI+F + A F + FNG+ F+ ++ E CHV+ ++
Sbjct: 141 KQVSNFRILRNQQKGMGFNFTVLIKFRNALDAKNFKEEFNGKSFSRMDPETCHVISVKEI 200
Query: 73 QFTG---------------YTGSLEHVQPAPASSTEQPSCPVCLERLDQDTSGILTTICN 117
F T + E P+CPVCLER+D +T+G++T C
Sbjct: 201 VFQKKLFQRPAANEDFPYLLTDPFTVKKKKELVKVELPTCPVCLERMDSETTGLVTIPCQ 260
Query: 118 HSFHCSCISKWTDSSCPVCRYC----------QQQPEKSICFVCQTSENLWMCVICGFVG 167
H+FHC C++KW +S CPVCR+ +Q + + C C +++NLW+C+ICG VG
Sbjct: 261 HTFHCQCLNKWKNSRCPVCRHSSLRLSRESLLKQAGDSAHCATCGSTDNLWICLICGNVG 320
Query: 168 CGRYKGGHAIIHWKETEHCYSLELETQRVWDYAGDNYVHRLIQSKTDGKLVELNSHCLHG 227
CGRY HAI H++ET HC+++++ TQRVWDYAGDNYVHRL+Q++ DGKLVE+
Sbjct: 321 CGRYNSKHAIKHYEETLHCFAMDIRTQRVWDYAGDNYVHRLVQNEVDGKLVEVGGSGDDD 380
Query: 228 KDNCGSCDCV---------------DSGTSDALLSSKV---EAIVNEYNELLAAQLENQK 269
++ G+ D + +S D L++ EY ++L +QLE+Q+
Sbjct: 381 NNDIGNSDELQNVVYGNRSKNGEKSNSNKKDGELAANFLRHREYHLEYVQVLISQLESQR 440
Query: 270 IYYETLLQEAKEETEKIIS--EAVKKAIAQ-KLQKMQAKLDRCVREKKFLDDLNENLLKN 326
YYE LQE K++T S E++KK++ KLQ + + RE L E++L
Sbjct: 441 EYYELKLQE-KDQTASDSSNVESLKKSMEDLKLQFQVTQKEWQKREMAQKSKLEEDMLVI 499
Query: 327 QEMWK-----AKISEIEEREKMALRAKDDKIQDSEAQLRDLMAYLEAEKTLQQLSISNEI 381
+ + +K E ERE AL ++ QD E Q++DLM YL++++ + S +
Sbjct: 500 EGLQANLDHLSKKQEQLERENKAL---EESKQDLEEQVKDLMFYLDSQEKFKDADES--V 554
Query: 382 KDGTVL 387
K+GT+L
Sbjct: 555 KEGTIL 560
>sp|Q95QN6|YQOE_CAEEL Uncharacterized RING finger protein EEED8.16 OS=Caenorhabditis
elegans GN=EEED8.16 PE=4 SV=1
Length = 590
Score = 235 bits (600), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 140/395 (35%), Positives = 215/395 (54%), Gaps = 60/395 (15%)
Query: 17 ILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFNSLEEEVCHVLFTVDVQFTG 76
I+ +++VR D +QY ++I+F + A FY+ FN FN LE C + F ++ T
Sbjct: 184 IVSIKVVR-DPAPNQYMLIIKFKEHNDAVTFYEEFNNCPFNDLESYCCTLFFVDRIECTT 242
Query: 77 YTGSLEHVQPAPASSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVC 136
S + S TE P+C VCLER+D +L +CNHSFH C+ +W D++CPVC
Sbjct: 243 ---SNDLFSSDDTSLTELPTCAVCLERMD---DSVLAILCNHSFHARCLEQWADNTCPVC 296
Query: 137 RYCQQQPE---KSICFVCQTSENLWMCVICGFVGCGRYKGGHAIIHWKETEHCYSLELET 193
RY Q PE + C C S +LW+C+ICG +GCGRY HA HW+ T H YSL++
Sbjct: 297 RYVQS-PEVVAEQRCNDCGMSNDLWICLICGNIGCGRYAEQHAQRHWELTSHTYSLKVGG 355
Query: 194 QRVWDYAGDNYVHRLIQSKTDGKLVELNSHCLHGKDNCGSCDCVDSGTSDALLSSKVEAI 253
+RVWDYAGDNYVHRLI++ DGKLVE + +++ S D + D K+E I
Sbjct: 356 ERVWDYAGDNYVHRLIENGADGKLVE------YQRESNASFDDKNQKGGD-----KLEGI 404
Query: 254 VNEYNELLAAQLENQKIYYETLLQEAKEETEKIISEAVKKAIAQ-------------KLQ 300
EY LL +QLE+Q+ Y+E L + + E+ +S+ K A AQ +L+
Sbjct: 405 KLEYTLLLTSQLEDQRKYFEGL----RHDMEQTMSKMEKTAYAQVENLEHQLTERSTELK 460
Query: 301 KMQAKLDRCVREKKFLD---------------------DLNENLLKNQEMWKAKISEIEE 339
++ LD V +K + ++N+ L K+Q++WK ++ ++ E
Sbjct: 461 SLKGDLDDTVTARKVAEKRATQTNEKVNKLANELKDEREINQMLRKDQQVWKGQVEKLIE 520
Query: 340 REKMALRAKDDKIQDSEAQLRDLMAYLEAEKTLQQ 374
+K A + KI+D ++Q+ DL+ + E + L++
Sbjct: 521 SQKTARTEYEKKIEDLQSQVNDLLMHFETQNKLKE 555
>sp|Q7ZUM8|UBP44_DANRE Ubiquitin carboxyl-terminal hydrolase 44 OS=Danio rerio GN=usp44
PE=2 SV=1
Length = 695
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 8/149 (5%)
Query: 143 PEKSICFVCQTSENLWMCVICGFVGCGRYKGGHAIIHWKETEHCYSLELETQRVWDYAGD 202
P+K C C T+E++W C+ C V CGRY HA+ H+KE H +LE+ V+ Y D
Sbjct: 21 PQKWHCVDCNTTESVWACLSCSHVACGRYIEEHALQHFKEQHHPLALEVNELYVYCYLCD 80
Query: 203 NYVHRLIQSKT-DGKLVE-----LNSHCLHGKDNCGSCDCVDSGTSDALLSSKVEAIVNE 256
+YV L + T D KL+ + S C G S D L S E + +
Sbjct: 81 DYV--LNDNATGDLKLLRSTLSAIKSQCYEVTTRSGRTLRSSSANGDQLSPSTQELQLRD 138
Query: 257 YNELLAAQLENQKIYYETLLQEAKEETEK 285
+ + A ++ L + +TE+
Sbjct: 139 EDRMFTALWHRRRALIGRLFRLWFAQTER 167
>sp|Q9H0E7|UBP44_HUMAN Ubiquitin carboxyl-terminal hydrolase 44 OS=Homo sapiens GN=USP44
PE=1 SV=2
Length = 712
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 143 PEKSICFVCQTSENLWMCVICGFVGCGRYKGGHAIIHWKETEHCYSLELETQRVWDYAGD 202
P+K C C T+E++W C+ C V CGRY HA+ H++E+ H +LE+ V+ Y D
Sbjct: 24 PQKWHCVDCNTTESIWACLSCSHVACGRYIEEHALKHFQESSHPVALEVNEMYVFCYLCD 83
Query: 203 NYVHRLIQSKTDGKL 217
+YV + T G L
Sbjct: 84 DYV---LNDNTTGDL 95
>sp|D2HBJ8|UBP44_AILME Ubiquitin carboxyl-terminal hydrolase 44 OS=Ailuropoda melanoleuca
GN=USP44 PE=3 SV=1
Length = 711
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 143 PEKSICFVCQTSENLWMCVICGFVGCGRYKGGHAIIHWKETEHCYSLELETQRVWDYAGD 202
P+K C C T+E++W C+ C V CGRY HA+ H++E+ H +LE+ V+ Y D
Sbjct: 24 PQKWHCVDCNTTESIWACLSCSHVACGRYIEEHALKHFQESSHPVALEVNEMYVFCYLCD 83
Query: 203 NYV 205
+YV
Sbjct: 84 DYV 86
>sp|Q0V9G5|UBP44_XENTR Ubiquitin carboxyl-terminal hydrolase 44 OS=Xenopus tropicalis
GN=usp44 PE=2 SV=1
Length = 652
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 143 PEKSICFVCQTSENLWMCVICGFVGCGRYKGGHAIIHWKETEHCYSLELETQRVWDYAGD 202
P+K C C T+E++W C+ C V CGRY HA+ H+++++H +LE+ V+ Y D
Sbjct: 21 PQKWHCVDCNTTESVWACLSCSHVACGRYIEEHALRHFQDSKHPLALEVNELYVFCYLCD 80
Query: 203 NYVHRLIQSKTDGKLVELNS 222
+YV + T G L L S
Sbjct: 81 DYV---LNDNTTGDLKLLRS 97
>sp|Q5XGZ2|UP44B_XENLA Ubiquitin carboxyl-terminal hydrolase 44-B OS=Xenopus laevis
GN=usp44-b PE=2 SV=1
Length = 690
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 143 PEKSICFVCQTSENLWMCVICGFVGCGRYKGGHAIIHWKETEHCYSLELETQRVWDYAGD 202
P+K C C T+E++W C+ C V CGRY HA+ H+++++H +LE+ V+ Y D
Sbjct: 21 PQKWHCVDCNTTESVWACLSCSHVACGRYIEEHALRHFQDSKHPLALEVNELYVFCYLCD 80
Query: 203 NYVHRLIQSKTDGKLVELNS 222
+YV + T G L L S
Sbjct: 81 DYV---LNDNTTGDLKLLRS 97
>sp|Q6NTR6|UP44A_XENLA Ubiquitin carboxyl-terminal hydrolase 44-A OS=Xenopus laevis
GN=usp44-a PE=2 SV=1
Length = 690
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 143 PEKSICFVCQTSENLWMCVICGFVGCGRYKGGHAIIHWKETEHCYSLELETQRVWDYAGD 202
P+K C C T+E++W C+ C V CGRY HA+ H+++++H +LE+ V+ Y D
Sbjct: 21 PQKWHCVDCNTTESVWACLSCSHVACGRYIEEHALRHFQDSKHPLALEVNELYVFCYLCD 80
Query: 203 NYVHRLIQSKTDGKLVELNS 222
+YV + T G L L S
Sbjct: 81 DYV---LNDNTTGDLKLLRS 97
>sp|Q8C2S0|UBP44_MOUSE Ubiquitin carboxyl-terminal hydrolase 44 OS=Mus musculus GN=Usp44
PE=2 SV=3
Length = 711
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 143 PEKSICFVCQTSENLWMCVICGFVGCGRYKGGHAIIHWKETEHCYSLELETQRVWDYAGD 202
P+K C VC T+E++W C+ C V CG+Y HA+ H++E+ H + E+ + Y +
Sbjct: 21 PQKWYCMVCNTTESIWACLSCSHVACGKYIQEHALKHFQESSHPVAFEVNDMYAFCYLCN 80
Query: 203 NYVHRLIQSKTDGKLVELNS 222
+YV + G L L S
Sbjct: 81 DYV---LNDNAAGDLKSLRS 97
>sp|Q70CQ1|UBP49_HUMAN Ubiquitin carboxyl-terminal hydrolase 49 OS=Homo sapiens GN=USP49
PE=2 SV=1
Length = 688
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 143 PEKSICFVCQTSENLWMCVICGFVGCGRYKGGHAIIHWKETEHCYSLELETQRVWDYAGD 202
P+K C C T+E++W C+ C V CGRY HA+ H++ET H ++E+ V+ Y
Sbjct: 21 PQKWCCLECATTESVWACLKCSHVACGRYIEDHALKHFEETGHPLAMEVRDLYVFCYLCK 80
Query: 203 NYVHRLIQSKTDGKLVELNSHCL 225
+YV + +G L L S L
Sbjct: 81 DYV---LNDNPEGDLKLLRSSLL 100
>sp|Q6P9L4|UBP49_MOUSE Ubiquitin carboxyl-terminal hydrolase 49 OS=Mus musculus GN=Usp49
PE=2 SV=1
Length = 685
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 143 PEKSICFVCQTSENLWMCVICGFVGCGRYKGGHAIIHWKETEHCYSLELETQRVWDYAGD 202
P+K C C T+E+ W C+ C V CGRY HA+ H++ET H ++E+ V+ Y
Sbjct: 21 PQKWCCLQCATTESAWACLKCSHVACGRYIEDHALKHFEETGHPLAMEVRDLYVFCYLCK 80
Query: 203 NYVHRLIQSKTDGKLVELNSHCL 225
+YV + +G L L S L
Sbjct: 81 DYV---LNDNPEGDLKLLRSSLL 100
>sp|Q20296|HDA6_CAEEL Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2
Length = 955
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 131 SSCPVCRYCQQQPEKSI-----CFVCQTSENLWMCVICGFVGCGRYKGGHAIIHWKETEH 185
++CP + + P I C CQ +W C+ C CGR+ HA++H + H
Sbjct: 853 ATCPHLKEVKPLPPAKINARTACSECQIGAEVWTCLTCYKYNCGRFVNEHAMMHHLSSSH 912
Query: 186 CYSLELETQRVWDYAGDNYVHR--LIQSKT 213
+L + VW Y D+YVH LI +K+
Sbjct: 913 PMALSMADLSVWCYPCDSYVHNPALIGAKS 942
>sp|A8HAL1|UBP16_DANRE Ubiquitin carboxyl-terminal hydrolase 16 OS=Danio rerio GN=usp16
PE=2 SV=1
Length = 815
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 47/96 (48%), Gaps = 12/96 (12%)
Query: 131 SSCPVCRYCQQQPEKSICFVCQT---SENLWMCVICGFVGCGRYKGGHAIIHW---KETE 184
SSC C Q +PE+ QT S +WMC+ CG GCGR HAI H+ +
Sbjct: 46 SSCQDCE--QDKPEEKQILEDQTDGESPAVWMCLKCGHRGCGRSGNQHAIKHYETPRSEP 103
Query: 185 HCYSLELETQRVWDYAGDNYVHRLIQSKTDGKLVEL 220
HC L L+ VW Y D+ V Q + G+L +L
Sbjct: 104 HCLVLSLDVWSVWCYICDDEV----QYSSTGQLAQL 135
>sp|Q54QE6|SIR2A_DICDI NAD-dependent deacetylase sir2A OS=Dictyostelium discoideum
GN=sir2A PE=2 SV=1
Length = 512
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 28/59 (47%)
Query: 148 CFVCQTSENLWMCVICGFVGCGRYKGGHAIIHWKETEHCYSLELETQRVWDYAGDNYVH 206
C C W+C+ CG V C R+ GHA H++ T+H S W Y D YVH
Sbjct: 34 CHACNDESENWICMTCGVVSCSRHVNGHAGEHFENTKHPISASFSDHSFWCYTCDTYVH 92
>sp|Q8LFY8|ATL54_ARATH RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2
SV=2
Length = 413
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDS--SCPVCR 137
E+ CPVCL ++D S L CNH+FH SCI W S +CP+CR
Sbjct: 173 ERTDCPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCR 219
>sp|Q8R5K2|UBP33_MOUSE Ubiquitin carboxyl-terminal hydrolase 33 OS=Mus musculus GN=Usp33
PE=1 SV=2
Length = 909
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 18/96 (18%)
Query: 112 LTTICNHSFHCSCISKWT-----DSSCPVCRYCQQQPEKSICFVCQTSENLWMCV--ICG 164
+TT NH H + + T S C+ C+ + NLW C+ C
Sbjct: 1 MTTFRNHCPHLDSVGEITKEDLIQKSLGACQDCKVR-----------GPNLWACLENRCS 49
Query: 165 FVGCGRYKGGHAIIHWKETEHCYSLELETQRVWDYA 200
+VGCG + H+ IH +ET+H ++ L T RVW YA
Sbjct: 50 YVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCYA 85
>sp|Q8TEY7|UBP33_HUMAN Ubiquitin carboxyl-terminal hydrolase 33 OS=Homo sapiens GN=USP33
PE=1 SV=2
Length = 942
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 156 NLWMCV--ICGFVGCGRYKGGHAIIHWKETEHCYSLELETQRVWDYA 200
NLW C+ C +VGCG + H+ IH +ET+H ++ L T RVW YA
Sbjct: 70 NLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCYA 116
>sp|A6QNM7|UBP33_BOVIN Ubiquitin carboxyl-terminal hydrolase 33 OS=Bos taurus GN=USP33
PE=2 SV=1
Length = 912
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 156 NLWMCV--ICGFVGCGRYKGGHAIIHWKETEHCYSLELETQRVWDYA 200
NLW C+ C +VGCG + H+ IH +ET+H ++ L T RVW YA
Sbjct: 39 NLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCYA 85
>sp|Q5REG5|UBP33_PONAB Ubiquitin carboxyl-terminal hydrolase 33 OS=Pongo abelii GN=USP33
PE=2 SV=1
Length = 914
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 156 NLWMCV--ICGFVGCGRYKGGHAIIHWKETEHCYSLELETQRVWDYA 200
NLW C+ C +VGCG + H+ IH +ET+H ++ L T RVW YA
Sbjct: 39 NLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCYA 85
>sp|A5PMR2|UBP33_DANRE Ubiquitin carboxyl-terminal hydrolase 33 OS=Danio rerio GN=usp33
PE=2 SV=1
Length = 897
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 156 NLWMCV--ICGFVGCGRYKGGHAIIHWKETEHCYSLELETQRVWDYA 200
NLW C+ C +VGCG H+ +H +ET H ++ L T RVW YA
Sbjct: 40 NLWACLENGCSYVGCGESHADHSTVHSQETRHNLTVNLTTLRVWCYA 86
>sp|Q28CN3|UBP33_XENTR Ubiquitin carboxyl-terminal hydrolase 33 OS=Xenopus tropicalis
GN=usp33 PE=2 SV=1
Length = 892
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 156 NLWMCV--ICGFVGCGRYKGGHAIIHWKETEHCYSLELETQRVWDYA 200
NLW C+ C +VGCG H+ +H ++T+HC ++ L T RVW Y
Sbjct: 39 NLWACLENGCSYVGCGESHVDHSTLHSQDTKHCLTVNLTTLRVWCYT 85
>sp|O22255|ATL64_ARATH RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2
SV=1
Length = 227
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 97 CPVCLERLDQDTSGILTTICNHSFHCSCISKW--TDSSCPVCRYCQQQPEKSI 147
C VCL +++ G L C HSFH CI W + S+CP+CR Q P + I
Sbjct: 108 CSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWFRSRSTCPLCRAPVQPPFQVI 160
>sp|A7Z056|UBP20_BOVIN Ubiquitin carboxyl-terminal hydrolase 20 OS=Bos taurus GN=USP20
PE=2 SV=1
Length = 912
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 145 KSICFVCQTS-ENLWMC--VICGFVGCGRYKGGHAIIHWKETEHCYSLELETQRVWDYA 200
KS C C S NLW C V C +VGCG H+ +H + +H ++ L T RVW YA
Sbjct: 27 KSTCQSCGVSGPNLWACLQVSCSYVGCGESFADHSTLHAQAKKHNLTVNLTTFRVWCYA 85
>sp|P0C041|ATL53_ARATH Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana
GN=ATL53 PE=3 SV=2
Length = 310
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 97 CPVCLERLDQDTSGILTTICNHSFHCSCISKW--TDSSCPVCRY-----CQQQPEKSI 147
C +CL ++D S L CNH+FH CI +W + S+CP+CR QQPE +
Sbjct: 155 CSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIVPTTQQPEHHV 212
>sp|Q9XF63|ATL3_ARATH RING-H2 finger protein ATL3 OS=Arabidopsis thaliana GN=ATL3 PE=2
SV=1
Length = 324
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 97 CPVCLERLDQDTSGILTTICNHSFHCSCISKW--TDSSCPVCRYCQQQPEKS 146
C +CL L + L CNHSFH CI W + S+CP+CR PE++
Sbjct: 127 CSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTVLGPEQA 178
>sp|Q9Y2K6|UBP20_HUMAN Ubiquitin carboxyl-terminal hydrolase 20 OS=Homo sapiens GN=USP20
PE=1 SV=2
Length = 914
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 145 KSICFVCQ-TSENLWMC--VICGFVGCGRYKGGHAIIHWKETEHCYSLELETQRVWDYA 200
K C C T NLW C V C +VGCG H+ IH + +H ++ L T R+W YA
Sbjct: 27 KGTCQSCGVTGPNLWACLQVACPYVGCGESFADHSTIHAQAKKHNLTVNLTTFRLWCYA 85
>sp|Q5R5Z6|UBP20_PONAB Ubiquitin carboxyl-terminal hydrolase 20 OS=Pongo abelii GN=USP20
PE=2 SV=1
Length = 913
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 153 TSENLWMC--VICGFVGCGRYKGGHAIIHWKETEHCYSLELETQRVWDYA 200
T NLW C V C +VGCG H+ IH + +H ++ L T R+W YA
Sbjct: 36 TGPNLWACLQVACPYVGCGESFADHSTIHAQAKKHNLTVNLTTFRLWCYA 85
>sp|Q11119|UBP14_SCHPO Ubiquitin carboxyl-terminal hydrolase 14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ubp14 PE=1 SV=2
Length = 775
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 6/56 (10%)
Query: 144 EKSICFVCQTSENLWMCVICGFVGCGRYK------GGHAIIHWKETEHCYSLELET 193
+ + C C +ENLWMC+ CG + CGR + GHA+ H+ +T H +++L++
Sbjct: 170 DNATCSKCDLAENLWMCLTCGALSCGRKQYGGGGGNGHALSHYDDTGHPLAVKLKS 225
>sp|Q08DA3|UBP16_BOVIN Ubiquitin carboxyl-terminal hydrolase 16 OS=Bos taurus GN=USP16
PE=2 SV=1
Length = 826
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 30/112 (26%)
Query: 125 ISKWTDSSCPVCRYCQQQPEK------------SICFVCQT--------------SENLW 158
I ++S PVCR+ ++ E+ +IC C+T + ++W
Sbjct: 13 IDDSSESLEPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDKSEEETEENPSVW 72
Query: 159 MCVICGFVGCGRY-KGGHAIIHW---KETEHCYSLELETQRVWDYAGDNYVH 206
+C+ CG GCGR + HA+ H+ + HC L L+ VW Y D+ VH
Sbjct: 73 LCLKCGHQGCGRNSQEQHALKHYMKPRSEPHCLVLSLDNWSVWCYLCDDEVH 124
>sp|Q8C6M1|UBP20_MOUSE Ubiquitin carboxyl-terminal hydrolase 20 OS=Mus musculus GN=Usp20
PE=1 SV=1
Length = 916
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 145 KSICFVCQTS-ENLWMC--VICGFVGCGRYKGGHAIIHWKETEHCYSLELETQRVWDYA 200
K C C + NLW C V C +VGCG H+ IH + +H ++ L T RVW YA
Sbjct: 27 KGTCQSCGVAGPNLWACLQVTCPYVGCGESFADHSSIHAQVKKHNLTVNLTTFRVWCYA 85
>sp|Q5EAE9|ATL43_ARATH RING-H2 finger protein ATL43 OS=Arabidopsis thaliana GN=ATL43 PE=2
SV=2
Length = 407
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 97 CPVCLERLDQDTSGILTTICNHSFHCSCISKWTD--SSCPVCRYCQQQPE 144
C VCL R + L C H+FH C+ W D S+CP+CRY + PE
Sbjct: 146 CAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRY-RVDPE 194
>sp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=2
SV=2
Length = 349
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 91 STEQP-SCPVCLERLDQDTSGILTTICNHSFHCSCISKW--TDSSCPVCR 137
S EQP C VCL L +C+H+FH CI W ++S+CP+CR
Sbjct: 200 SLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCR 249
>sp|Q9LZJ6|ATL5_ARATH RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2
SV=1
Length = 257
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 97 CPVCLERLDQDTSGILTTICNHSFHCSCISKW--TDSSCPVCRYCQQQPEKSI 147
C VCL ++D G + C H FH CI W + SSCP+CR QP + +
Sbjct: 113 CSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCR-APVQPAQPV 164
>sp|Q9LF64|ATL52_ARATH RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2
SV=1
Length = 362
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 97 CPVCLERLDQDTSGILTTICNHSFHCSCISKW--TDSSCPVCR 137
C VCL +++ S L CNH+FH CI W + S+CP+CR
Sbjct: 142 CSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCR 184
>sp|Q9SLC4|ATL40_ARATH RING-H2 finger protein ATL40 OS=Arabidopsis thaliana GN=ATL40 PE=2
SV=1
Length = 217
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 14/107 (13%)
Query: 97 CPVCLERLDQDTSGILTTICNHSFHCSCISKW--TDSSCPVCR------YCQQQPEKSIC 148
C VCL L++ + + C H FH SC+ W T S+CPVCR + + +PE
Sbjct: 100 CAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTTQSTCPVCRTEAEPSHPRLEPEPREG 159
Query: 149 FVCQTSENLWMCVICGFVGCGRYKGGHAIIHWKETEHCYSLELETQR 195
V + L F G GG ++ + E + R
Sbjct: 160 PVGDFAPPL------DFAGVDNKTGGSSVSRLDSFRRILTRERSSNR 200
>sp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2
SV=3
Length = 323
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 97 CPVCLERLDQDTSGILTTICNHSFHCSCISKW--TDSSCPVCR 137
C +CL L+ + L ICNH FH CI W + ++CPVCR
Sbjct: 124 CAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCR 166
>sp|P38237|UBP14_YEAST Ubiquitin carboxyl-terminal hydrolase 14 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UBP14 PE=1
SV=2
Length = 781
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 12/73 (16%)
Query: 131 SSCPVCRYCQ--QQPEKSI----CFVCQTSENLWMCVICGFVGCGRYKGG-----HAIIH 179
S+CP Q +PE ++ C C ++NLW+C+ CG +GCGR + G HA+ H
Sbjct: 169 STCPHTENFQIPSKPENTVNLNQCSSCDLTQNLWLCLHCGNIGCGREQIGIDGHSHALDH 228
Query: 180 WK-ETEHCYSLEL 191
++ H +++L
Sbjct: 229 YRSNNNHPLAIKL 241
>sp|Q9Y6I4|UBP3_HUMAN Ubiquitin carboxyl-terminal hydrolase 3 OS=Homo sapiens GN=USP3
PE=1 SV=2
Length = 520
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 137 RYCQQQPEKSICFVCQTSENLWMCVICGFVGCGRYKGGHAIIHWKETE 184
++ P C VC+++++ W+C+ C V CGRY GHA H+++ +
Sbjct: 18 KFPNGSPSSWCCSVCRSNKSPWVCLTCSSVHCGRYVNGHAKKHYEDAQ 65
>sp|Q9SRQ8|ATL51_ARATH RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2
SV=2
Length = 356
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKW--TDSSCPVCR 137
E C VCL ++ S L CNH+FH CI W + S+CP+CR
Sbjct: 155 ESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCR 201
>sp|Q9Y5T5|UBP16_HUMAN Ubiquitin carboxyl-terminal hydrolase 16 OS=Homo sapiens GN=USP16
PE=1 SV=1
Length = 823
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 30/102 (29%)
Query: 134 PVCRYCQQQPEK------------SICFVCQT--------------SENLWMCVICGFVG 167
PVCR+ ++ E+ +IC C+T ++W+C+ CG G
Sbjct: 22 PVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDKAEEETEEKPSVWLCLKCGHQG 81
Query: 168 CGRY-KGGHAIIHW---KETEHCYSLELETQRVWDYAGDNYV 205
CGR + HA+ H+ + HC L L+ VW Y DN V
Sbjct: 82 CGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYVCDNEV 123
>sp|Q91W36|UBP3_MOUSE Ubiquitin carboxyl-terminal hydrolase 3 OS=Mus musculus GN=Usp3
PE=2 SV=1
Length = 520
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 137 RYCQQQPEKSICFVCQTSENLWMCVICGFVGCGRYKGGHAIIHWKETE 184
++ P C VC+++++ W+C+ C V CGRY GHA H+++ +
Sbjct: 18 KFPNGSPSSWCCSVCRSNKSPWVCLTCSSVHCGRYVNGHAKKHYEDAQ 65
>sp|Q9LQM2|ATL81_ARATH RING-H2 finger protein ATL81 OS=Arabidopsis thaliana GN=ATL81 PE=2
SV=1
Length = 332
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Query: 97 CPVCL-ERLDQDTSGILTTICNHSFHCSCISKWTDS--SCPVCR 137
C +CL E +D DT +++T CNHSFH CI W + +CPVCR
Sbjct: 154 CSICLTEFMDDDTIRLIST-CNHSFHTICIDLWFEGHKTCPVCR 196
>sp|Q6NKR1|ATL28_ARATH RING-H2 finger protein ATL28 OS=Arabidopsis thaliana GN=ATL28 PE=2
SV=1
Length = 254
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 51/136 (37%), Gaps = 46/136 (33%)
Query: 67 LFTV-DVQFTGYTGSLEHVQPAPASSTEQP---------------------SCPVCLERL 104
LFT ++Q T Y G L HV P ++ P C +CL
Sbjct: 52 LFTTWNLQRTPY-GDLIHVATPPENTGLDPFIIRSFPVFHYSSATKKNHGTECAICLSEF 110
Query: 105 DQDTSGILTTICNHSFHCSCISKWTD--SSCPVCRYCQQQPEKSICFVCQTSENLWMCVI 162
+ + L T+C H FH +CI W + +CPVCR C+ P
Sbjct: 111 SDEDTVRLITVCRHPFHSNCIDLWFELHKTCPVCR-CELDP------------------- 150
Query: 163 CGFVGCGRYKGGHAII 178
G +G GR + H +
Sbjct: 151 -GMIGSGRLESFHNTV 165
>sp|Q9P0P0|RN181_HUMAN E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1
SV=1
Length = 153
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 18/94 (19%)
Query: 62 EVCHVLFT-VDVQFTGYTGSLEHVQPAPASST--------------EQPSCPVCLERLDQ 106
E+ LF +D + G +H P PA+ T + CPVCL ++
Sbjct: 26 ELARSLFNRMDFEDLGLVVDWDHHLPPPAAKTVVENLPRTVIRGSQAELKCPVCLLEFEE 85
Query: 107 DTSGILTTICNHSFHCSCISKWTD--SSCPVCRY 138
+ + I C+H FH SCI W +SCP+CRY
Sbjct: 86 EETAI-EMPCHHLFHSSCILPWLSKTNSCPLCRY 118
>sp|Q9C7I1|ATL34_ARATH RING-H2 finger protein ATL34 OS=Arabidopsis thaliana GN=ATL34 PE=2
SV=1
Length = 327
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 97 CPVCLERLDQDTSGILTTICNHSFHCSCISKW--TDSSCPVCR 137
C +CL + + + L C+H+FH SCI W + S+CPVCR
Sbjct: 128 CAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCR 170
>sp|Q8LDB8|RING2_ARATH E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana
GN=At1g63170 PE=2 SV=2
Length = 381
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 76 GYTGSLEHVQPAPASSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKW--TDSSC 133
G +EH P E C +CL + +T + C H FHC C+ KW +++C
Sbjct: 309 GTDSPVEHALP-----HEDAECCICLSAYEDETE-LRELPCGHHFHCGCVDKWLYINATC 362
Query: 134 PVCRY 138
P+C+Y
Sbjct: 363 PLCKY 367
>sp|Q8LF65|ATL17_ARATH RING-H2 finger protein ATL17 OS=Arabidopsis thaliana GN=ATL17 PE=2
SV=2
Length = 235
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 97 CPVCLERLDQDTSGILTTICNHSFHCSCISKW--TDSSCPVCR 137
C VCL + SG + C H+FH CI W + SSCP+CR
Sbjct: 76 CSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHSHSSCPLCR 118
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146,054,053
Number of Sequences: 539616
Number of extensions: 6015859
Number of successful extensions: 28389
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 1329
Number of HSP's that attempted gapping in prelim test: 26957
Number of HSP's gapped (non-prelim): 2631
length of query: 407
length of database: 191,569,459
effective HSP length: 120
effective length of query: 287
effective length of database: 126,815,539
effective search space: 36396059693
effective search space used: 36396059693
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)