Query 015426
Match_columns 407
No_of_seqs 291 out of 2124
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 06:12:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015426.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015426hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0804 Cytoplasmic Zn-finger 100.0 3.4E-99 7E-104 735.6 35.2 391 1-397 86-480 (493)
2 PF07576 BRAP2: BRCA1-associat 99.9 5.6E-24 1.2E-28 176.8 8.5 80 1-81 24-104 (110)
3 PF02148 zf-UBP: Zn-finger in 99.5 4.4E-15 9.6E-20 111.8 1.1 60 148-207 1-61 (63)
4 KOG0944 Ubiquitin-specific pro 99.1 2E-11 4.3E-16 126.1 3.2 64 142-205 176-250 (763)
5 COG5207 UBP14 Isopeptidase T [ 99.0 9.1E-11 2E-15 117.8 2.8 62 144-205 172-243 (749)
6 PF13639 zf-RING_2: Ring finge 98.9 2.8E-10 6.2E-15 79.3 0.4 42 95-137 1-44 (44)
7 PF15227 zf-C3HC4_4: zinc fing 98.8 7.4E-10 1.6E-14 76.4 1.1 36 97-136 1-42 (42)
8 smart00290 ZnF_UBP Ubiquitin C 98.7 3.4E-09 7.4E-14 75.8 1.8 49 147-195 1-49 (50)
9 KOG4628 Predicted E3 ubiquitin 98.7 5.6E-09 1.2E-13 102.6 3.0 58 95-153 230-290 (348)
10 KOG0804 Cytoplasmic Zn-finger 98.7 4E-07 8.6E-12 90.9 15.2 93 247-341 312-405 (493)
11 cd02669 Peptidase_C19M A subfa 98.6 2.1E-08 4.5E-13 103.7 3.4 64 142-205 13-76 (440)
12 PLN03208 E3 ubiquitin-protein 98.6 2.7E-08 6E-13 90.1 2.2 46 92-141 16-79 (193)
13 PHA02929 N1R/p28-like protein; 98.6 2.7E-08 5.9E-13 93.7 2.2 50 92-141 172-227 (238)
14 COG5540 RING-finger-containing 98.5 3.9E-08 8.4E-13 93.4 2.0 125 5-142 240-373 (374)
15 KOG1873 Ubiquitin-specific pro 98.4 9.5E-08 2.1E-12 100.3 2.7 52 154-205 90-146 (877)
16 PF12678 zf-rbx1: RING-H2 zinc 98.4 9.7E-08 2.1E-12 74.0 2.0 44 94-137 19-73 (73)
17 PHA02926 zinc finger-like prot 98.4 7.3E-08 1.6E-12 88.3 1.2 50 92-141 168-230 (242)
18 KOG0317 Predicted E3 ubiquitin 98.4 9.2E-08 2E-12 90.7 1.6 46 93-142 238-285 (293)
19 PF13920 zf-C3HC4_3: Zinc fing 98.4 1.2E-07 2.5E-12 67.9 1.6 45 93-141 1-48 (50)
20 PF13923 zf-C3HC4_2: Zinc fing 98.4 6.8E-08 1.5E-12 65.4 0.3 36 97-136 1-39 (39)
21 TIGR00599 rad18 DNA repair pro 98.4 1.1E-07 2.3E-12 95.8 1.9 55 83-141 15-71 (397)
22 PF14634 zf-RING_5: zinc-RING 98.4 2E-07 4.3E-12 64.9 2.1 42 96-138 1-44 (44)
23 KOG0823 Predicted E3 ubiquitin 98.3 1.6E-07 3.4E-12 86.7 1.1 46 92-141 45-95 (230)
24 TIGR00570 cdk7 CDK-activating 98.2 4.3E-05 9.3E-10 74.4 15.6 47 94-141 3-54 (309)
25 PF00097 zf-C3HC4: Zinc finger 98.2 2.8E-07 6.1E-12 62.9 0.3 36 97-136 1-41 (41)
26 PF13445 zf-RING_UBOX: RING-ty 98.2 2.5E-07 5.5E-12 63.9 -0.1 33 97-130 1-33 (43)
27 KOG0320 Predicted E3 ubiquitin 98.2 4.6E-07 1E-11 80.3 0.6 48 92-141 129-178 (187)
28 cd00162 RING RING-finger (Real 98.2 6.9E-07 1.5E-11 61.2 1.2 41 96-139 1-44 (45)
29 KOG2177 Predicted E3 ubiquitin 98.2 8.3E-07 1.8E-11 85.3 2.2 44 90-137 9-54 (386)
30 smart00504 Ubox Modified RING 98.1 1.6E-06 3.5E-11 64.7 1.7 43 95-141 2-46 (63)
31 smart00184 RING Ring finger. E 98.0 2.5E-06 5.4E-11 56.3 1.6 36 97-136 1-39 (39)
32 PF14835 zf-RING_6: zf-RING of 98.0 4E-06 8.6E-11 62.2 2.1 45 92-140 5-50 (65)
33 KOG0287 Postreplication repair 98.0 1.4E-06 3E-11 84.1 -0.6 53 85-141 14-68 (442)
34 COG5432 RAD18 RING-finger-cont 97.9 2.4E-06 5.2E-11 80.9 0.7 54 84-141 15-70 (391)
35 COG5243 HRD1 HRD ubiquitin lig 97.9 3E-06 6.4E-11 82.8 0.9 48 93-140 286-344 (491)
36 PF12861 zf-Apc11: Anaphase-pr 97.9 6.1E-06 1.3E-10 65.0 1.9 48 94-141 21-82 (85)
37 KOG4367 Predicted Zn-finger pr 97.8 0.00028 6.1E-09 70.5 12.6 30 92-125 2-31 (699)
38 KOG0825 PHD Zn-finger protein 97.7 9E-06 2E-10 85.9 0.1 48 93-141 122-171 (1134)
39 KOG2164 Predicted E3 ubiquitin 97.6 1.5E-05 3.3E-10 81.3 1.0 45 94-142 186-237 (513)
40 COG5574 PEX10 RING-finger-cont 97.5 2.9E-05 6.2E-10 73.2 0.5 45 93-141 214-262 (271)
41 PF04564 U-box: U-box domain; 97.5 4.7E-05 1E-09 58.9 1.3 45 93-141 3-50 (73)
42 KOG0802 E3 ubiquitin ligase [P 97.4 4E-05 8.6E-10 81.4 0.1 48 93-140 290-340 (543)
43 COG5194 APC11 Component of SCF 97.3 0.00012 2.6E-09 56.4 1.6 47 95-141 32-81 (88)
44 KOG0978 E3 ubiquitin ligase in 97.3 4.8E-05 1E-09 81.1 -1.1 46 92-141 641-689 (698)
45 KOG0824 Predicted E3 ubiquitin 97.0 0.00038 8.3E-09 66.8 2.3 46 92-141 5-53 (324)
46 KOG1734 Predicted RING-contain 97.0 0.00034 7.3E-09 66.0 1.6 52 90-141 220-281 (328)
47 smart00744 RINGv The RING-vari 96.9 0.00036 7.7E-09 49.7 1.1 40 96-137 1-49 (49)
48 KOG0827 Predicted E3 ubiquitin 96.9 0.02 4.4E-07 56.8 13.1 45 95-140 5-55 (465)
49 KOG0828 Predicted E3 ubiquitin 96.7 0.00039 8.4E-09 70.6 -0.3 50 92-141 569-634 (636)
50 PF11793 FANCL_C: FANCL C-term 96.5 0.00045 9.8E-09 53.0 -0.7 48 94-141 2-66 (70)
51 KOG0311 Predicted E3 ubiquitin 96.4 0.00023 4.9E-09 69.7 -3.7 49 90-141 39-90 (381)
52 KOG1493 Anaphase-promoting com 96.4 0.00045 9.7E-09 52.9 -1.4 46 96-141 22-81 (84)
53 PF00038 Filament: Intermediat 96.4 0.48 1E-05 46.5 19.5 109 246-356 167-275 (312)
54 KOG1039 Predicted E3 ubiquitin 96.1 0.0023 5E-08 63.7 1.2 50 92-141 159-221 (344)
55 KOG1645 RING-finger-containing 95.9 0.0031 6.6E-08 63.0 1.1 46 93-138 3-53 (463)
56 KOG4739 Uncharacterized protei 95.8 0.23 4.9E-06 46.8 13.0 44 96-141 5-48 (233)
57 KOG4159 Predicted E3 ubiquitin 95.8 0.0029 6.3E-08 64.2 0.5 46 92-141 82-129 (398)
58 PF00038 Filament: Intermediat 95.5 1.6 3.5E-05 42.9 18.6 110 261-370 167-282 (312)
59 KOG0297 TNF receptor-associate 95.0 0.011 2.4E-07 60.4 1.8 50 91-144 18-70 (391)
60 PF14570 zf-RING_4: RING/Ubox 95.0 0.011 2.3E-07 41.8 1.1 44 97-140 1-47 (48)
61 KOG4265 Predicted E3 ubiquitin 95.0 0.0091 2E-07 58.9 0.9 45 93-141 289-336 (349)
62 COG5219 Uncharacterized conser 94.9 0.0058 1.3E-07 66.6 -0.8 48 93-140 1468-1522(1525)
63 KOG2879 Predicted E3 ubiquitin 94.8 0.02 4.4E-07 54.5 2.6 47 91-141 236-287 (298)
64 KOG2930 SCF ubiquitin ligase, 94.7 0.0077 1.7E-07 48.9 -0.3 48 92-139 44-106 (114)
65 KOG4185 Predicted E3 ubiquitin 94.6 1.1 2.5E-05 43.7 14.8 47 94-140 3-54 (296)
66 PF11789 zf-Nse: Zinc-finger o 94.6 0.015 3.3E-07 42.7 1.0 40 92-135 9-53 (57)
67 COG1579 Zn-ribbon protein, pos 94.5 3.8 8.3E-05 38.9 17.2 63 294-356 93-155 (239)
68 KOG1785 Tyrosine kinase negati 94.2 0.014 3.1E-07 58.0 0.4 43 95-141 370-416 (563)
69 KOG1941 Acetylcholine receptor 94.1 0.013 2.7E-07 58.3 -0.3 48 93-140 364-415 (518)
70 COG5152 Uncharacterized conser 94.0 0.011 2.5E-07 53.5 -0.7 41 94-138 196-238 (259)
71 PF06785 UPF0242: Uncharacteri 93.9 7.1 0.00015 38.6 17.8 76 297-372 141-223 (401)
72 PF10212 TTKRSYEDQ: Predicted 93.9 2.3 5E-05 44.5 15.5 93 268-369 414-506 (518)
73 PF10168 Nup88: Nuclear pore c 93.9 5.1 0.00011 44.3 19.1 32 338-369 634-665 (717)
74 KOG1940 Zn-finger protein [Gen 93.7 0.027 5.8E-07 54.4 1.1 46 93-138 157-204 (276)
75 KOG2660 Locus-specific chromos 93.6 0.01 2.2E-07 57.9 -1.9 48 91-141 12-61 (331)
76 KOG4445 Uncharacterized conser 93.4 0.013 2.8E-07 56.3 -1.6 35 93-128 114-148 (368)
77 PF05883 Baculo_RING: Baculovi 93.2 0.023 5.1E-07 48.7 -0.2 35 94-129 26-66 (134)
78 PF04641 Rtf2: Rtf2 RING-finge 93.1 0.12 2.6E-06 49.8 4.5 51 91-141 110-161 (260)
79 COG5175 MOT2 Transcriptional r 92.9 0.036 7.7E-07 54.2 0.6 50 92-141 12-64 (480)
80 PF07227 DUF1423: Protein of u 92.9 11 0.00023 38.9 18.1 66 118-204 123-192 (446)
81 PF12325 TMF_TATA_bd: TATA ele 92.8 5.4 0.00012 33.9 15.7 42 328-369 71-115 (120)
82 PF14259 RRM_6: RNA recognitio 92.8 0.1 2.2E-06 39.0 2.9 56 1-57 10-65 (70)
83 KOG4172 Predicted E3 ubiquitin 92.8 0.012 2.6E-07 42.2 -2.1 43 95-141 8-54 (62)
84 KOG0977 Nuclear envelope prote 92.8 1.4 3E-05 46.6 12.0 76 299-374 298-377 (546)
85 KOG3970 Predicted E3 ubiquitin 92.6 0.071 1.5E-06 49.4 2.1 50 91-142 47-106 (299)
86 KOG1571 Predicted E3 ubiquitin 92.6 0.05 1.1E-06 53.8 1.2 43 92-140 303-346 (355)
87 KOG0161 Myosin class II heavy 92.6 9.7 0.00021 46.3 19.8 111 262-372 1430-1548(1930)
88 PF10367 Vps39_2: Vacuolar sor 92.4 0.084 1.8E-06 43.2 2.1 34 92-127 76-109 (109)
89 KOG1813 Predicted E3 ubiquitin 92.2 0.056 1.2E-06 52.1 1.0 42 95-140 242-285 (313)
90 PF06005 DUF904: Protein of un 92.1 4.5 9.7E-05 31.1 11.1 48 295-342 23-70 (72)
91 PRK09039 hypothetical protein; 91.7 8.4 0.00018 38.7 15.8 38 326-363 145-185 (343)
92 KOG0971 Microtubule-associated 91.5 10 0.00023 42.2 16.8 30 302-331 460-492 (1243)
93 COG5185 HEC1 Protein involved 91.1 9.6 0.00021 39.4 15.3 12 117-128 102-113 (622)
94 KOG0250 DNA repair protein RAD 90.7 18 0.00038 41.3 18.2 69 294-362 391-462 (1074)
95 KOG1002 Nucleotide excision re 90.7 0.059 1.3E-06 55.6 -0.7 46 92-141 534-586 (791)
96 PF09731 Mitofilin: Mitochondr 90.5 28 0.0006 37.4 20.3 31 344-374 379-409 (582)
97 PF14447 Prok-RING_4: Prokaryo 90.4 0.2 4.3E-06 36.3 2.1 31 111-141 20-50 (55)
98 PF07926 TPR_MLP1_2: TPR/MLP1/ 90.4 11 0.00023 32.4 18.9 47 318-368 84-130 (132)
99 KOG2932 E3 ubiquitin ligase in 90.3 0.081 1.7E-06 51.3 -0.1 51 112-170 105-155 (389)
100 KOG4275 Predicted E3 ubiquitin 90.0 0.11 2.4E-06 50.0 0.6 42 93-140 299-341 (350)
101 PF00076 RRM_1: RNA recognitio 89.8 0.55 1.2E-05 34.4 4.2 56 1-57 10-65 (70)
102 cd00590 RRM RRM (RNA recogniti 89.7 0.67 1.5E-05 33.6 4.6 56 1-57 11-66 (74)
103 KOG0982 Centrosomal protein Nu 89.4 27 0.0006 35.8 17.8 21 255-275 250-272 (502)
104 KOG0971 Microtubule-associated 89.4 41 0.0009 37.7 19.6 23 350-372 462-484 (1243)
105 KOG3161 Predicted E3 ubiquitin 89.3 0.07 1.5E-06 56.3 -1.4 47 91-138 8-54 (861)
106 PF07800 DUF1644: Protein of u 89.1 0.14 3.1E-06 45.1 0.5 14 93-106 1-14 (162)
107 PRK09039 hypothetical protein; 88.9 27 0.00059 35.0 17.5 50 298-347 138-187 (343)
108 PRK12704 phosphodiesterase; Pr 88.7 35 0.00076 36.3 18.2 6 381-386 206-211 (520)
109 PF09304 Cortex-I_coil: Cortex 88.4 11 0.00024 31.2 11.0 18 351-368 59-76 (107)
110 KOG0995 Centromere-associated 88.4 22 0.00047 37.8 15.8 14 49-62 12-25 (581)
111 KOG4460 Nuclear pore complex, 88.2 38 0.00083 35.9 17.6 114 256-370 559-682 (741)
112 PF07888 CALCOCO1: Calcium bin 88.1 40 0.00087 35.9 22.5 22 348-369 281-302 (546)
113 COG5222 Uncharacterized conser 88.1 0.18 3.8E-06 48.7 0.5 40 95-138 275-318 (427)
114 KOG1814 Predicted E3 ubiquitin 88.0 0.18 3.9E-06 50.7 0.6 46 93-139 183-238 (445)
115 KOG1029 Endocytic adaptor prot 88.0 25 0.00055 38.7 16.2 11 261-271 373-383 (1118)
116 KOG1001 Helicase-like transcri 87.7 0.23 4.9E-06 54.1 1.1 42 95-141 455-500 (674)
117 PF12718 Tropomyosin_1: Tropom 87.6 18 0.0004 31.5 15.0 10 329-338 84-93 (143)
118 PRK10361 DNA recombination pro 87.4 41 0.00089 35.3 17.6 41 316-356 138-178 (475)
119 PF09726 Macoilin: Transmembra 87.3 33 0.00072 37.9 17.3 62 305-366 588-659 (697)
120 KOG3039 Uncharacterized conser 87.1 0.36 7.8E-06 45.5 1.9 49 93-141 220-270 (303)
121 KOG3759 Uncharacterized RUN do 87.0 11 0.00025 38.8 12.4 43 326-368 203-245 (621)
122 KOG1952 Transcription factor N 86.9 0.27 5.9E-06 53.6 1.1 48 93-140 190-246 (950)
123 KOG0161 Myosin class II heavy 86.9 51 0.0011 40.4 19.6 75 298-372 958-1035(1930)
124 PF15397 DUF4618: Domain of un 86.7 31 0.00068 33.2 18.0 77 295-374 86-162 (258)
125 PRK00409 recombination and DNA 86.5 51 0.0011 37.0 18.6 23 260-282 520-542 (782)
126 KOG3268 Predicted E3 ubiquitin 86.4 0.34 7.4E-06 43.4 1.3 47 93-140 164-227 (234)
127 TIGR03319 YmdA_YtgF conserved 86.4 49 0.0011 35.2 18.1 7 380-386 199-205 (514)
128 PRK10884 SH3 domain-containing 86.2 15 0.00032 34.2 12.1 27 297-323 118-144 (206)
129 PF10211 Ax_dynein_light: Axon 86.2 27 0.00058 32.0 16.2 22 346-367 166-187 (189)
130 KOG2114 Vacuolar assembly/sort 86.0 0.4 8.6E-06 52.4 1.8 43 93-139 839-881 (933)
131 PF12906 RINGv: RING-variant d 85.6 0.3 6.5E-06 34.3 0.4 38 97-136 1-47 (47)
132 COG2433 Uncharacterized conser 85.5 44 0.00095 35.9 16.2 13 377-389 538-550 (652)
133 smart00360 RRM RNA recognition 85.4 1.8 4E-05 30.8 4.7 56 1-57 8-64 (71)
134 PF15070 GOLGA2L5: Putative go 85.2 62 0.0013 35.3 19.2 23 348-370 120-142 (617)
135 PF11932 DUF3450: Protein of u 85.1 32 0.0007 32.7 14.3 30 355-387 147-176 (251)
136 PF10168 Nup88: Nuclear pore c 85.0 39 0.00085 37.4 16.6 21 348-368 637-657 (717)
137 KOG3002 Zn finger protein [Gen 84.9 0.51 1.1E-05 46.4 1.8 47 89-141 43-91 (299)
138 PHA02562 46 endonuclease subun 84.6 43 0.00094 35.5 16.5 7 50-56 50-56 (562)
139 PF09726 Macoilin: Transmembra 84.3 49 0.0011 36.6 16.8 22 344-365 560-581 (697)
140 KOG4005 Transcription factor X 84.0 39 0.00084 32.0 13.5 45 297-341 97-141 (292)
141 KOG0996 Structural maintenance 84.0 86 0.0019 36.3 18.4 27 349-375 997-1024(1293)
142 KOG0298 DEAD box-containing he 83.8 0.16 3.4E-06 57.7 -2.5 47 91-140 1150-1198(1394)
143 PHA02825 LAP/PHD finger-like p 83.7 0.52 1.1E-05 41.7 1.1 45 92-141 6-59 (162)
144 COG1579 Zn-ribbon protein, pos 83.7 41 0.00089 32.0 17.4 78 296-373 102-187 (239)
145 PF07798 DUF1640: Protein of u 83.4 34 0.00073 30.8 18.9 52 260-312 44-95 (177)
146 KOG0996 Structural maintenance 83.3 96 0.0021 36.0 20.0 19 298-316 859-877 (1293)
147 PF09731 Mitofilin: Mitochondr 83.3 70 0.0015 34.3 20.5 12 260-271 277-288 (582)
148 smart00362 RRM_2 RNA recogniti 83.2 1.9 4.2E-05 30.8 4.0 55 1-57 11-65 (72)
149 PF14662 CCDC155: Coiled-coil 83.1 38 0.00082 31.1 16.6 19 344-362 173-191 (193)
150 PF04912 Dynamitin: Dynamitin 83.0 38 0.00083 34.5 14.6 52 311-362 336-387 (388)
151 COG2433 Uncharacterized conser 82.3 18 0.0004 38.6 11.9 67 297-364 422-488 (652)
152 PHA03096 p28-like protein; Pro 81.8 0.41 8.9E-06 46.7 -0.2 35 95-129 179-217 (284)
153 PF12128 DUF3584: Protein of u 81.7 99 0.0021 36.5 19.0 17 351-367 772-788 (1201)
154 smart00787 Spc7 Spc7 kinetocho 81.7 58 0.0013 32.3 18.9 9 265-273 128-136 (312)
155 PF08317 Spc7: Spc7 kinetochor 81.6 59 0.0013 32.3 18.0 35 340-374 234-268 (325)
156 PF04111 APG6: Autophagy prote 81.5 30 0.00064 34.4 12.8 21 351-371 114-134 (314)
157 PF04111 APG6: Autophagy prote 81.2 29 0.00062 34.5 12.5 34 298-331 51-84 (314)
158 PRK00106 hypothetical protein; 81.1 83 0.0018 33.7 18.2 8 379-386 219-226 (535)
159 COG1196 Smc Chromosome segrega 80.6 1.3E+02 0.0027 35.5 20.1 9 356-364 473-481 (1163)
160 COG3883 Uncharacterized protei 80.5 33 0.00072 33.1 12.1 18 319-336 92-109 (265)
161 KOG1428 Inhibitor of type V ad 80.3 0.84 1.8E-05 52.6 1.4 48 93-141 3485-3544(3738)
162 KOG1853 LIS1-interacting prote 80.0 57 0.0012 31.2 15.4 25 350-374 147-171 (333)
163 PF10226 DUF2216: Uncharacteri 79.9 48 0.001 30.3 14.2 13 358-370 133-145 (195)
164 PF12325 TMF_TATA_bd: TATA ele 79.7 37 0.0008 28.8 15.1 20 263-282 26-45 (120)
165 KOG0825 PHD Zn-finger protein 79.6 0.47 1E-05 51.4 -0.7 59 93-151 95-166 (1134)
166 PHA02862 5L protein; Provision 79.5 0.74 1.6E-05 40.0 0.6 42 95-141 3-53 (156)
167 TIGR00606 rad50 rad50. This fa 79.2 1.3E+02 0.0027 36.0 19.0 23 119-141 663-688 (1311)
168 COG4477 EzrA Negative regulato 79.1 73 0.0016 33.8 14.8 70 302-371 394-475 (570)
169 KOG0972 Huntingtin interacting 79.0 53 0.0012 32.1 12.9 12 263-274 230-241 (384)
170 KOG0994 Extracellular matrix g 79.0 1.2E+02 0.0026 35.3 17.1 29 342-370 1723-1751(1758)
171 TIGR03007 pepcterm_ChnLen poly 78.9 88 0.0019 32.7 17.7 56 262-317 156-224 (498)
172 PF11932 DUF3450: Protein of u 78.9 61 0.0013 30.8 14.8 11 350-360 109-119 (251)
173 PRK10884 SH3 domain-containing 78.9 41 0.00088 31.3 12.0 9 353-361 156-164 (206)
174 PF11559 ADIP: Afadin- and alp 78.6 44 0.00096 29.1 16.0 59 302-360 92-150 (151)
175 PRK04778 septation ring format 78.6 83 0.0018 33.8 16.0 20 366-387 451-470 (569)
176 PF06825 HSBP1: Heat shock fac 78.4 8.9 0.00019 27.8 5.8 33 333-365 18-50 (54)
177 KOG0995 Centromere-associated 78.4 1E+02 0.0022 33.0 18.7 12 196-207 197-208 (581)
178 PF00261 Tropomyosin: Tropomyo 78.3 62 0.0013 30.6 20.0 19 350-368 197-215 (237)
179 KOG0977 Nuclear envelope prote 78.3 1E+02 0.0022 33.0 16.1 17 353-369 200-216 (546)
180 PF15070 GOLGA2L5: Putative go 78.2 1.1E+02 0.0024 33.4 16.7 17 296-312 166-182 (617)
181 PF13863 DUF4200: Domain of un 77.9 40 0.00087 28.2 16.6 25 259-283 10-34 (126)
182 PF07888 CALCOCO1: Calcium bin 77.7 1E+02 0.0023 32.9 18.5 6 195-200 90-95 (546)
183 PF10046 BLOC1_2: Biogenesis o 77.1 38 0.00082 27.5 14.6 65 293-361 31-98 (99)
184 TIGR03752 conj_TIGR03752 integ 76.9 33 0.00072 35.8 11.6 20 349-368 122-141 (472)
185 COG5236 Uncharacterized conser 76.6 1.5 3.3E-05 43.3 1.9 46 91-140 58-107 (493)
186 PF11068 YlqD: YlqD protein; 76.6 47 0.001 28.6 10.8 37 349-388 66-102 (131)
187 PF15233 SYCE1: Synaptonemal c 76.5 48 0.001 28.4 13.5 70 298-367 35-113 (134)
188 PF15466 DUF4635: Domain of un 76.3 9.7 0.00021 31.9 6.2 19 350-368 105-123 (135)
189 KOG1853 LIS1-interacting prote 76.0 76 0.0016 30.4 16.3 25 350-374 164-188 (333)
190 TIGR01069 mutS2 MutS2 family p 75.3 1.5E+02 0.0032 33.4 17.9 22 261-282 516-537 (771)
191 TIGR02449 conserved hypothetic 74.7 34 0.00074 25.8 9.1 32 301-332 4-35 (65)
192 KOG0964 Structural maintenance 74.3 1.1E+02 0.0025 34.8 15.3 23 261-283 185-207 (1200)
193 KOG1100 Predicted E3 ubiquitin 74.2 2.1 4.7E-05 39.8 2.1 38 97-140 161-199 (207)
194 KOG2307 Low density lipoprotei 74.0 1E+02 0.0023 32.9 14.3 36 351-386 128-166 (705)
195 TIGR02894 DNA_bind_RsfA transc 73.9 61 0.0013 28.9 11.0 51 318-372 104-154 (161)
196 PF04059 RRM_2: RNA recognitio 73.8 11 0.00023 30.8 5.8 67 1-68 13-83 (97)
197 PF08317 Spc7: Spc7 kinetochor 73.5 1E+02 0.0022 30.7 19.0 24 344-367 245-268 (325)
198 TIGR03185 DNA_S_dndD DNA sulfu 73.4 70 0.0015 35.0 13.9 17 350-366 300-316 (650)
199 KOG0976 Rho/Rac1-interacting s 73.3 1.2E+02 0.0025 34.0 14.8 13 349-361 350-362 (1265)
200 KOG3800 Predicted E3 ubiquitin 73.2 1.8 3.8E-05 41.9 1.3 44 96-140 2-50 (300)
201 COG2888 Predicted Zn-ribbon RN 73.2 1.6 3.4E-05 32.2 0.7 33 131-167 28-60 (61)
202 PRK14890 putative Zn-ribbon RN 72.6 1.7 3.7E-05 31.9 0.9 33 131-167 26-58 (59)
203 KOG4362 Transcriptional regula 72.1 1.1 2.4E-05 48.3 -0.2 45 92-140 19-68 (684)
204 KOG4692 Predicted E3 ubiquitin 72.0 1.4 3E-05 43.7 0.3 47 91-141 419-467 (489)
205 PRK02224 chromosome segregatio 71.9 1.8E+02 0.0039 32.9 18.2 13 268-280 181-193 (880)
206 KOG1029 Endocytic adaptor prot 71.8 99 0.0022 34.3 13.9 13 38-50 31-43 (1118)
207 PRK04406 hypothetical protein; 71.7 40 0.00088 26.1 8.4 24 343-366 32-55 (75)
208 PF06160 EzrA: Septation ring 71.7 1.5E+02 0.0032 31.9 18.7 31 247-281 59-89 (560)
209 TIGR01010 BexC_CtrB_KpsE polys 71.4 1.2E+02 0.0025 30.5 17.7 19 265-283 168-186 (362)
210 PF02403 Seryl_tRNA_N: Seryl-t 71.3 55 0.0012 26.7 9.8 24 342-365 80-103 (108)
211 PF04576 Zein-binding: Zein-bi 71.2 54 0.0012 26.6 13.8 24 260-283 3-26 (94)
212 KOG1812 Predicted E3 ubiquitin 71.1 1.6 3.5E-05 44.5 0.6 35 93-128 145-180 (384)
213 KOG1103 Predicted coiled-coil 71.0 49 0.0011 33.1 10.7 102 261-362 172-292 (561)
214 PF09755 DUF2046: Uncharacteri 70.7 1.1E+02 0.0025 30.1 21.6 24 246-270 25-48 (310)
215 PRK00409 recombination and DNA 70.7 1.4E+02 0.003 33.6 15.6 12 271-282 517-528 (782)
216 KOG0976 Rho/Rac1-interacting s 70.0 1.9E+02 0.0041 32.4 15.7 7 355-361 391-397 (1265)
217 PRK04778 septation ring format 70.0 1.6E+02 0.0035 31.6 16.7 31 247-281 63-93 (569)
218 PF15290 Syntaphilin: Golgi-lo 69.5 1.1E+02 0.0025 29.7 15.5 31 350-380 149-179 (305)
219 KOG0826 Predicted E3 ubiquitin 69.0 1.4 3.1E-05 43.3 -0.3 46 93-141 299-346 (357)
220 PF07889 DUF1664: Protein of u 68.9 74 0.0016 27.2 10.5 16 319-334 83-98 (126)
221 KOG4643 Uncharacterized coiled 68.6 2.2E+02 0.0048 32.6 18.4 38 294-331 412-449 (1195)
222 PF09416 UPF1_Zn_bind: RNA hel 68.4 1.2 2.6E-05 39.3 -0.9 75 147-221 2-89 (152)
223 PRK15422 septal ring assembly 68.2 56 0.0012 25.6 10.9 39 302-340 37-75 (79)
224 KOG1655 Protein involved in va 67.9 1E+02 0.0022 28.4 11.9 23 349-374 125-147 (218)
225 PF06705 SF-assemblin: SF-asse 67.8 1.1E+02 0.0024 28.9 19.5 14 351-364 176-189 (247)
226 KOG0612 Rho-associated, coiled 67.6 2.5E+02 0.0055 32.9 16.9 29 3-31 173-205 (1317)
227 PRK04023 DNA polymerase II lar 67.4 5.4 0.00012 45.0 3.6 56 110-167 618-673 (1121)
228 TIGR01069 mutS2 MutS2 family p 67.2 2.2E+02 0.0047 32.0 16.9 12 271-282 512-523 (771)
229 COG3813 Uncharacterized protei 67.1 4 8.8E-05 31.2 1.9 47 94-140 5-51 (84)
230 PHA00626 hypothetical protein 66.8 4 8.8E-05 29.6 1.7 32 132-167 2-33 (59)
231 PF04102 SlyX: SlyX; InterPro 66.7 44 0.00095 25.3 7.6 25 344-368 26-50 (69)
232 PRK02119 hypothetical protein; 66.6 47 0.001 25.5 7.8 24 344-367 31-54 (73)
233 COG3074 Uncharacterized protei 66.5 56 0.0012 24.9 10.3 31 309-339 44-74 (79)
234 PF06906 DUF1272: Protein of u 66.5 4.6 0.0001 29.4 2.0 47 94-140 5-51 (57)
235 COG4026 Uncharacterized protei 66.3 1.2E+02 0.0026 28.6 13.1 39 298-336 164-202 (290)
236 KOG2026 Spindle pole body prot 66.3 5.6 0.00012 40.1 3.2 58 144-201 28-86 (442)
237 PF05715 zf-piccolo: Piccolo Z 66.2 3.6 7.7E-05 30.3 1.4 9 156-164 48-56 (61)
238 PF04849 HAP1_N: HAP1 N-termin 66.0 1.4E+02 0.0031 29.5 16.4 26 350-375 276-302 (306)
239 PRK14873 primosome assembly pr 65.9 3.5 7.6E-05 45.1 1.9 45 119-166 384-431 (665)
240 PRK04325 hypothetical protein; 65.7 50 0.0011 25.4 7.8 28 341-368 28-55 (74)
241 PHA02148 hypothetical protein 65.6 11 0.00024 30.1 4.1 64 319-386 38-101 (110)
242 PF08746 zf-RING-like: RING-li 65.5 3.1 6.8E-05 28.6 0.9 37 97-136 1-43 (43)
243 KOG2391 Vacuolar sorting prote 65.5 1.5E+02 0.0033 29.6 13.7 15 322-336 264-278 (365)
244 TIGR03545 conserved hypothetic 65.4 1.2E+02 0.0026 32.7 13.2 81 259-340 167-259 (555)
245 KOG2002 TPR-containing nuclear 65.3 2.3E+02 0.0049 32.4 15.4 25 351-375 873-897 (1018)
246 COG4942 Membrane-bound metallo 65.1 1E+02 0.0022 31.9 11.9 6 304-309 73-78 (420)
247 KOG0288 WD40 repeat protein Ti 65.1 1.7E+02 0.0037 30.1 14.1 13 261-273 32-44 (459)
248 PRK11546 zraP zinc resistance 65.0 69 0.0015 28.1 9.4 25 345-369 91-115 (143)
249 PRK02793 phi X174 lysis protei 64.7 53 0.0011 25.2 7.7 26 343-368 29-54 (72)
250 KOG4005 Transcription factor X 64.7 1.3E+02 0.0028 28.6 13.2 28 297-324 90-117 (292)
251 COG3937 Uncharacterized conser 64.6 81 0.0018 26.1 10.4 20 346-365 86-105 (108)
252 PF10481 CENP-F_N: Cenp-F N-te 63.8 1.5E+02 0.0032 28.9 12.8 56 313-372 76-131 (307)
253 PHA03161 hypothetical protein; 63.3 1.1E+02 0.0023 27.0 11.7 9 353-361 92-100 (150)
254 PF12773 DZR: Double zinc ribb 63.1 6.2 0.00013 27.6 2.1 33 132-164 14-50 (50)
255 KOG4673 Transcription factor T 62.4 2.5E+02 0.0054 31.0 17.9 19 354-372 609-627 (961)
256 KOG0972 Huntingtin interacting 62.3 1.4E+02 0.0031 29.3 11.6 45 330-374 278-322 (384)
257 KOG4443 Putative transcription 62.2 3.5 7.7E-05 44.1 1.0 46 93-139 17-71 (694)
258 PF07889 DUF1664: Protein of u 62.1 1E+02 0.0022 26.4 13.3 22 261-282 55-76 (126)
259 PRK00295 hypothetical protein; 61.7 68 0.0015 24.3 7.9 26 343-368 26-51 (68)
260 PRK11020 hypothetical protein; 61.6 81 0.0017 26.4 8.6 19 297-315 5-23 (118)
261 PF07926 TPR_MLP1_2: TPR/MLP1/ 61.5 1E+02 0.0022 26.3 16.4 41 323-363 78-118 (132)
262 PF14282 FlxA: FlxA-like prote 61.5 32 0.00069 28.4 6.4 21 346-366 54-74 (106)
263 PRK14559 putative protein seri 61.3 6.7 0.00015 42.7 3.0 49 96-155 3-51 (645)
264 TIGR03752 conj_TIGR03752 integ 61.2 85 0.0018 32.9 10.7 8 383-390 171-178 (472)
265 PF08581 Tup_N: Tup N-terminal 61.1 78 0.0017 24.8 11.9 33 327-359 41-73 (79)
266 PRK00736 hypothetical protein; 60.9 68 0.0015 24.2 7.6 26 343-368 26-51 (68)
267 PF13893 RRM_5: RNA recognitio 60.9 7.3 0.00016 27.6 2.2 44 9-57 4-47 (56)
268 KOG3859 Septins (P-loop GTPase 60.8 1.8E+02 0.0038 28.7 12.2 46 320-365 354-399 (406)
269 PF15254 CCDC14: Coiled-coil d 60.5 2.8E+02 0.0061 31.0 15.9 39 326-364 509-550 (861)
270 PF06160 EzrA: Septation ring 60.3 2.5E+02 0.0053 30.2 16.3 28 298-325 380-407 (560)
271 PF05290 Baculo_IE-1: Baculovi 60.2 3.5 7.5E-05 35.4 0.5 50 93-142 79-133 (140)
272 KOG0579 Ste20-like serine/thre 60.2 2.7E+02 0.0059 30.8 17.2 24 259-282 815-838 (1187)
273 PF11180 DUF2968: Protein of u 60.0 1.4E+02 0.0031 27.4 14.1 25 258-282 103-127 (192)
274 PF06632 XRCC4: DNA double-str 59.7 2E+02 0.0043 29.0 12.9 16 299-314 160-175 (342)
275 PRK11519 tyrosine kinase; Prov 59.3 2.9E+02 0.0062 30.7 20.7 18 265-282 265-282 (719)
276 PF09403 FadA: Adhesion protei 59.2 1.1E+02 0.0025 26.1 15.5 31 332-362 89-119 (126)
277 PF12761 End3: Actin cytoskele 59.0 84 0.0018 29.0 9.2 25 347-371 164-188 (195)
278 PF06810 Phage_GP20: Phage min 58.9 1.3E+02 0.0028 26.6 10.4 6 362-367 102-107 (155)
279 PF10473 CENP-F_leu_zip: Leuci 58.8 1.2E+02 0.0027 26.4 15.6 105 252-357 34-140 (140)
280 KOG3850 Predicted membrane pro 58.4 2.2E+02 0.0047 29.1 16.9 13 250-262 262-274 (455)
281 PLN03229 acetyl-coenzyme A car 58.4 1.8E+02 0.0039 32.3 13.0 24 318-341 519-544 (762)
282 KOG0801 Predicted E3 ubiquitin 58.3 3.4 7.4E-05 36.6 0.1 29 93-122 176-204 (205)
283 KOG0243 Kinesin-like protein [ 58.2 3.5E+02 0.0075 31.3 16.3 9 208-216 350-358 (1041)
284 PF04899 MbeD_MobD: MbeD/MobD 58.2 82 0.0018 24.1 8.5 55 313-367 9-66 (70)
285 PF00261 Tropomyosin: Tropomyo 58.2 1.7E+02 0.0036 27.6 18.4 35 327-361 178-215 (237)
286 KOG4117 Heat shock factor bind 57.9 74 0.0016 23.8 7.0 19 347-365 45-63 (73)
287 PF09738 DUF2051: Double stran 57.7 2E+02 0.0044 28.4 13.5 31 331-362 136-166 (302)
288 PF14369 zf-RING_3: zinc-finge 57.7 4.2 9.2E-05 26.7 0.5 14 194-207 1-14 (35)
289 COG5185 HEC1 Protein involved 57.5 2.5E+02 0.0054 29.5 15.7 12 194-205 231-242 (622)
290 smart00787 Spc7 Spc7 kinetocho 57.5 2E+02 0.0044 28.5 18.2 12 351-362 247-258 (312)
291 PF07106 TBPIP: Tat binding pr 57.5 58 0.0013 28.9 8.0 20 351-370 146-165 (169)
292 PHA02562 46 endonuclease subun 57.2 2.6E+02 0.0056 29.6 19.3 6 230-235 286-291 (562)
293 TIGR00595 priA primosomal prot 57.1 7 0.00015 41.4 2.3 45 119-166 214-262 (505)
294 PRK09841 cryptic autophosphory 57.0 3.1E+02 0.0068 30.4 19.1 12 270-281 270-281 (726)
295 KOG2034 Vacuolar sorting prote 56.8 4.4 9.6E-05 44.9 0.7 36 91-128 814-849 (911)
296 PF05911 DUF869: Plant protein 56.6 2.3E+02 0.005 31.8 13.8 66 296-361 623-691 (769)
297 PF15254 CCDC14: Coiled-coil d 56.6 3.2E+02 0.007 30.5 17.3 24 301-324 452-475 (861)
298 PF14446 Prok-RING_1: Prokaryo 56.3 8.8 0.00019 27.8 1.9 36 93-128 4-39 (54)
299 TIGR02231 conserved hypothetic 56.2 2.2E+02 0.0048 30.1 13.4 14 349-362 151-164 (525)
300 KOG4674 Uncharacterized conser 56.1 4.8E+02 0.01 32.3 19.2 47 297-343 837-883 (1822)
301 PF05700 BCAS2: Breast carcino 56.1 1.8E+02 0.0038 27.2 16.9 49 317-365 160-211 (221)
302 PF00769 ERM: Ezrin/radixin/mo 56.0 1.9E+02 0.0041 27.6 14.6 23 342-364 95-117 (246)
303 KOG3091 Nuclear pore complex, 55.6 1.9E+02 0.004 30.5 12.0 11 298-308 384-394 (508)
304 TIGR00414 serS seryl-tRNA synt 55.3 83 0.0018 32.5 9.7 21 345-365 85-105 (418)
305 KOG4466 Component of histone d 55.3 2.1E+02 0.0045 27.9 13.6 35 272-307 40-74 (291)
306 KOG0933 Structural maintenance 55.1 3.8E+02 0.0083 30.9 18.5 12 248-259 684-695 (1174)
307 PF10079 DUF2317: Uncharacteri 55.1 1.3E+02 0.0029 32.2 11.4 31 319-349 453-483 (542)
308 smart00105 ArfGap Putative GTP 54.8 4.1 9E-05 33.9 0.0 34 144-177 2-35 (112)
309 KOG0993 Rab5 GTPase effector R 54.7 2.6E+02 0.0056 28.8 12.7 46 300-345 137-182 (542)
310 PF11802 CENP-K: Centromere-as 54.7 2.1E+02 0.0046 27.7 13.6 68 298-367 111-178 (268)
311 PF10267 Tmemb_cc2: Predicted 54.6 80 0.0017 32.4 9.2 58 306-363 214-271 (395)
312 PF15233 SYCE1: Synaptonemal c 54.5 1.4E+02 0.003 25.7 12.5 11 354-364 93-103 (134)
313 KOG2068 MOT2 transcription fac 54.5 9.2 0.0002 37.8 2.4 48 93-140 248-297 (327)
314 COG5082 AIR1 Arginine methyltr 54.2 23 0.00049 32.5 4.7 101 90-207 56-166 (190)
315 PF05701 WEMBL: Weak chloropla 54.0 3E+02 0.0065 29.3 18.1 19 350-368 337-355 (522)
316 PF10272 Tmpp129: Putative tra 54.0 5.6 0.00012 40.1 0.9 52 90-141 267-351 (358)
317 PF07045 DUF1330: Protein of u 54.0 16 0.00035 27.1 3.2 23 28-50 36-58 (65)
318 KOG3304 Surfeit family protein 53.7 1.5E+02 0.0032 25.6 15.2 33 251-283 18-50 (148)
319 KOG0982 Centrosomal protein Nu 53.6 2.8E+02 0.006 28.8 15.2 22 309-330 365-386 (502)
320 PRK06231 F0F1 ATP synthase sub 53.5 1.9E+02 0.004 26.8 16.1 22 261-282 73-94 (205)
321 PF09986 DUF2225: Uncharacteri 53.3 6.9 0.00015 36.6 1.3 13 156-168 47-59 (214)
322 PF08614 ATG16: Autophagy prot 53.3 1.8E+02 0.0039 26.5 11.1 45 296-340 122-166 (194)
323 KOG0980 Actin-binding protein 53.2 3.9E+02 0.0084 30.3 19.0 17 253-269 391-407 (980)
324 PF03961 DUF342: Protein of un 52.7 1.3E+02 0.0028 31.3 10.8 17 351-367 390-406 (451)
325 PF00643 zf-B_box: B-box zinc 52.6 3.7 7.9E-05 27.5 -0.5 28 145-172 3-30 (42)
326 PF06156 DUF972: Protein of un 52.3 80 0.0017 26.2 7.3 40 298-337 16-55 (107)
327 TIGR00606 rad50 rad50. This fa 52.2 4.8E+02 0.01 31.2 17.2 14 93-106 676-689 (1311)
328 cd07666 BAR_SNX7 The Bin/Amphi 52.1 2.2E+02 0.0048 27.2 18.7 68 289-357 149-217 (243)
329 COG5220 TFB3 Cdk activating ki 52.1 3.4 7.5E-05 38.9 -0.9 36 93-128 9-46 (314)
330 COG3074 Uncharacterized protei 52.0 1.1E+02 0.0023 23.5 10.8 52 311-366 25-76 (79)
331 PF15619 Lebercilin: Ciliary p 51.8 2E+02 0.0042 26.5 12.7 85 287-371 2-89 (194)
332 PRK11281 hypothetical protein; 51.7 4.6E+02 0.01 30.8 15.8 13 351-363 354-366 (1113)
333 KOG2398 Predicted proline-seri 50.9 3.7E+02 0.0079 29.4 17.4 31 248-278 57-87 (611)
334 PF05852 DUF848: Gammaherpesvi 50.8 1.7E+02 0.0038 25.7 11.7 15 351-365 97-111 (146)
335 KOG2807 RNA polymerase II tran 50.5 12 0.00025 37.0 2.4 18 193-210 351-368 (378)
336 PF07544 Med9: RNA polymerase 50.3 53 0.0011 25.8 5.7 41 297-341 28-68 (83)
337 COG4942 Membrane-bound metallo 50.2 3.1E+02 0.0068 28.4 14.8 24 349-372 153-176 (420)
338 KOG0163 Myosin class VI heavy 50.1 4.1E+02 0.0089 29.8 17.8 9 355-363 1003-1011(1259)
339 PF15397 DUF4618: Domain of un 50.0 2.5E+02 0.0053 27.2 15.8 11 351-361 121-131 (258)
340 PF01412 ArfGap: Putative GTPa 49.9 4.1 8.9E-05 34.2 -0.7 35 142-176 10-44 (116)
341 PRK04863 mukB cell division pr 49.7 5.6E+02 0.012 31.2 19.9 9 194-202 215-223 (1486)
342 PRK14474 F0F1 ATP synthase sub 49.7 2.4E+02 0.0052 26.9 17.1 25 264-288 54-78 (250)
343 KOG4460 Nuclear pore complex, 49.5 3.6E+02 0.0079 28.9 17.9 12 92-103 394-405 (741)
344 PF15066 CAGE1: Cancer-associa 49.1 3.4E+02 0.0073 28.5 16.2 22 261-282 332-353 (527)
345 PF00628 PHD: PHD-finger; Int 49.1 7.1 0.00015 27.2 0.5 32 96-128 1-32 (51)
346 PF15272 BBP1_C: Spindle pole 48.9 2.2E+02 0.0048 26.3 16.5 29 332-360 121-149 (196)
347 COG4026 Uncharacterized protei 48.9 2.4E+02 0.0052 26.7 13.4 11 305-315 143-153 (290)
348 PRK00286 xseA exodeoxyribonucl 48.8 3.2E+02 0.007 28.1 17.6 23 1-23 6-29 (438)
349 PF07191 zinc-ribbons_6: zinc- 48.8 5.8 0.00013 30.3 0.0 39 95-141 2-41 (70)
350 KOG2807 RNA polymerase II tran 48.5 8.5 0.00018 38.0 1.1 9 28-36 215-223 (378)
351 PF02185 HR1: Hr1 repeat; Int 48.2 1.1E+02 0.0025 22.8 7.4 22 345-366 42-63 (70)
352 KOG0239 Kinesin (KAR3 subfamil 48.2 4.2E+02 0.0091 29.3 15.6 71 297-368 241-318 (670)
353 PF09006 Surfac_D-trimer: Lung 48.0 41 0.00089 23.5 4.1 28 349-376 5-32 (46)
354 cd07617 BAR_Endophilin_B2 The 47.9 2.4E+02 0.0053 26.5 13.8 25 351-375 183-208 (220)
355 PF03961 DUF342: Protein of un 47.8 1.6E+02 0.0034 30.6 10.5 19 344-362 390-408 (451)
356 PF03854 zf-P11: P-11 zinc fin 47.8 7.2 0.00016 27.4 0.4 40 96-141 4-46 (50)
357 PF02994 Transposase_22: L1 tr 47.7 28 0.00061 35.4 4.7 13 350-362 172-184 (370)
358 KOG2817 Predicted E3 ubiquitin 47.6 8.1 0.00018 39.1 0.8 47 93-140 333-384 (394)
359 TIGR01005 eps_transp_fam exopo 47.6 4.3E+02 0.0094 29.3 19.0 13 269-281 196-208 (754)
360 KOG0946 ER-Golgi vesicle-tethe 47.1 4.7E+02 0.01 29.5 15.9 12 113-124 385-396 (970)
361 KOG1705 Uncharacterized conser 47.0 12 0.00026 29.9 1.6 39 130-168 27-66 (110)
362 PF05766 NinG: Bacteriophage L 47.0 1E+02 0.0022 28.3 7.8 12 95-106 7-18 (189)
363 KOG0243 Kinesin-like protein [ 46.8 4.7E+02 0.01 30.4 14.2 24 294-317 445-468 (1041)
364 PRK05431 seryl-tRNA synthetase 46.7 1.7E+02 0.0038 30.2 10.5 21 345-365 82-102 (425)
365 PF09728 Taxilin: Myosin-like 46.6 3E+02 0.0066 27.2 16.4 37 247-283 21-59 (309)
366 KOG1867 Ubiquitin-specific pro 46.6 14 0.00031 39.0 2.5 64 142-207 40-105 (492)
367 PF04568 IATP: Mitochondrial A 46.4 62 0.0013 26.6 5.7 12 348-359 88-99 (100)
368 PF10211 Ax_dynein_light: Axon 46.3 2.3E+02 0.0051 25.8 15.9 13 243-255 61-73 (189)
369 PRK13428 F0F1 ATP synthase sub 46.3 3.7E+02 0.0079 28.0 16.1 22 262-283 48-69 (445)
370 PLN02678 seryl-tRNA synthetase 46.2 1.9E+02 0.004 30.3 10.6 22 344-365 86-107 (448)
371 PF09755 DUF2046: Uncharacteri 46.0 3.1E+02 0.0067 27.2 18.3 10 274-283 84-93 (310)
372 KOG2196 Nuclear porin [Nuclear 46.0 2.7E+02 0.006 26.5 15.0 30 248-281 74-103 (254)
373 PRK06231 F0F1 ATP synthase sub 45.7 2.5E+02 0.0054 26.0 16.5 28 263-290 96-123 (205)
374 PRK14559 putative protein seri 45.5 16 0.00035 39.9 2.8 45 120-167 3-51 (645)
375 PF09789 DUF2353: Uncharacteri 45.4 2.4E+02 0.0051 28.2 10.6 23 318-340 79-101 (319)
376 TIGR02132 phaR_Bmeg polyhydrox 45.2 2.4E+02 0.0052 25.6 15.5 53 295-347 84-136 (189)
377 PRK05580 primosome assembly pr 45.2 14 0.0003 40.7 2.2 46 118-166 381-430 (679)
378 PF14723 SSFA2_C: Sperm-specif 45.1 2.1E+02 0.0045 25.9 9.1 16 351-366 160-175 (179)
379 TIGR01843 type_I_hlyD type I s 44.8 3.4E+02 0.0073 27.2 15.3 112 263-374 84-214 (423)
380 PF08172 CASP_C: CASP C termin 44.5 1.9E+02 0.0041 27.7 9.6 64 299-362 1-119 (248)
381 PRK00846 hypothetical protein; 44.5 1.5E+02 0.0033 23.1 8.7 20 347-366 38-57 (77)
382 PF05377 FlaC_arch: Flagella a 44.3 1.2E+02 0.0025 22.2 6.1 17 351-367 29-45 (55)
383 PF07106 TBPIP: Tat binding pr 44.1 2.3E+02 0.0049 25.1 10.8 7 261-267 84-90 (169)
384 KOG0994 Extracellular matrix g 44.1 6.1E+02 0.013 30.0 17.4 8 162-169 1397-1404(1758)
385 TIGR02231 conserved hypothetic 43.9 3E+02 0.0066 29.1 12.1 19 345-363 154-172 (525)
386 KOG1003 Actin filament-coating 43.9 2.7E+02 0.0058 25.8 17.8 23 258-280 13-35 (205)
387 TIGR01005 eps_transp_fam exopo 43.9 4.9E+02 0.011 28.9 17.2 14 259-272 197-210 (754)
388 KOG0963 Transcription factor/C 43.6 4.6E+02 0.01 28.5 16.2 112 246-358 226-343 (629)
389 PF05791 Bacillus_HBL: Bacillu 43.4 2.5E+02 0.0055 25.4 13.2 45 318-366 135-179 (184)
390 PLN02320 seryl-tRNA synthetase 43.3 2.1E+02 0.0045 30.5 10.4 23 343-365 144-166 (502)
391 PF10146 zf-C4H2: Zinc finger- 43.3 2.9E+02 0.0064 26.1 12.4 18 298-315 33-50 (230)
392 PF08826 DMPK_coil: DMPK coile 43.2 1.4E+02 0.003 22.2 9.7 10 351-360 47-56 (61)
393 PRK08476 F0F1 ATP synthase sub 43.1 2.2E+02 0.0047 24.6 15.5 9 351-359 126-134 (141)
394 PF10046 BLOC1_2: Biogenesis o 43.0 1.8E+02 0.0039 23.5 11.4 49 316-365 40-88 (99)
395 KOG1842 FYVE finger-containing 42.8 1.7E+02 0.0037 30.4 9.2 41 121-172 167-211 (505)
396 smart00132 LIM Zinc-binding do 42.7 27 0.00059 22.1 2.6 37 96-140 1-37 (39)
397 KOG1760 Molecular chaperone Pr 42.4 2.2E+02 0.0047 24.3 10.9 40 327-366 79-118 (131)
398 PRK09343 prefoldin subunit bet 42.3 2.1E+02 0.0045 24.1 13.0 14 350-363 99-112 (121)
399 cd00350 rubredoxin_like Rubred 42.2 18 0.00038 23.2 1.5 10 156-165 16-25 (33)
400 PLN03134 glycine-rich RNA-bind 42.2 39 0.00084 29.4 4.2 55 1-56 46-101 (144)
401 TIGR00237 xseA exodeoxyribonuc 42.0 4.2E+02 0.009 27.5 17.2 71 2-74 1-78 (432)
402 PF07139 DUF1387: Protein of u 42.0 3E+02 0.0065 27.2 10.6 66 302-367 176-253 (302)
403 PF10571 UPF0547: Uncharacteri 41.9 14 0.0003 22.5 1.0 9 132-140 2-10 (26)
404 PF05597 Phasin: Poly(hydroxya 41.5 2.3E+02 0.005 24.4 13.5 19 344-362 110-128 (132)
405 PF14817 HAUS5: HAUS augmin-li 40.8 5E+02 0.011 28.5 13.1 19 268-286 326-344 (632)
406 PF15450 DUF4631: Domain of un 40.7 4.8E+02 0.01 27.8 16.3 19 260-278 305-323 (531)
407 PF08657 DASH_Spc34: DASH comp 40.7 1.2E+02 0.0026 29.3 7.6 18 345-362 241-258 (259)
408 PF02601 Exonuc_VII_L: Exonucl 40.7 3.6E+02 0.0078 26.4 16.3 7 45-51 29-35 (319)
409 PF09744 Jnk-SapK_ap_N: JNK_SA 40.6 2.6E+02 0.0057 24.8 13.4 92 272-363 12-109 (158)
410 PRK07352 F0F1 ATP synthase sub 40.6 2.7E+02 0.0057 24.8 16.1 21 261-281 44-64 (174)
411 PF12808 Mto2_bdg: Micro-tubul 40.3 1.4E+02 0.003 21.5 5.9 20 350-369 29-48 (52)
412 KOG0612 Rho-associated, coiled 40.2 6.9E+02 0.015 29.5 15.7 24 3-26 53-76 (1317)
413 PF07352 Phage_Mu_Gam: Bacteri 40.1 1.9E+02 0.0042 25.1 8.4 31 331-361 27-57 (149)
414 KOG0933 Structural maintenance 40.0 6.5E+02 0.014 29.2 17.9 8 367-374 375-382 (1174)
415 PF05529 Bap31: B-cell recepto 40.0 2.5E+02 0.0055 25.3 9.4 15 348-362 173-187 (192)
416 PF12329 TMF_DNA_bd: TATA elem 40.0 1.7E+02 0.0037 22.4 10.4 10 353-362 57-66 (74)
417 KOG1815 Predicted E3 ubiquitin 39.9 20 0.00043 37.3 2.4 101 94-207 70-198 (444)
418 PLN03119 putative ADP-ribosyla 39.6 15 0.00032 39.1 1.3 36 142-177 20-55 (648)
419 KOG0964 Structural maintenance 39.6 6.6E+02 0.014 29.1 15.2 13 351-363 364-376 (1200)
420 PF03992 ABM: Antibiotic biosy 39.5 1.2E+02 0.0026 22.1 6.2 35 16-50 35-69 (78)
421 KOG4673 Transcription factor T 39.4 5.7E+02 0.012 28.3 17.8 19 351-369 545-563 (961)
422 TIGR00414 serS seryl-tRNA synt 39.4 1.9E+02 0.0041 29.9 9.4 24 345-368 78-101 (418)
423 CHL00019 atpF ATP synthase CF0 39.3 2.9E+02 0.0062 24.9 16.1 20 261-280 49-68 (184)
424 PTZ00464 SNF-7-like protein; P 39.2 3.2E+02 0.007 25.4 18.0 15 351-365 125-139 (211)
425 PRK08476 F0F1 ATP synthase sub 39.2 2.5E+02 0.0055 24.2 17.7 14 353-366 121-134 (141)
426 PF09457 RBD-FIP: FIP domain ; 39.2 1.4E+02 0.003 21.1 5.9 23 342-364 13-35 (48)
427 PRK10929 putative mechanosensi 39.1 7.1E+02 0.015 29.3 16.4 12 352-363 335-346 (1109)
428 KOG4848 Extracellular matrix-a 39.0 3.1E+02 0.0068 25.2 15.3 43 249-292 100-142 (225)
429 smart00502 BBC B-Box C-termina 39.0 2.1E+02 0.0045 23.1 12.5 20 319-338 51-70 (127)
430 TIGR01837 PHA_granule_1 poly(h 38.9 2.3E+02 0.0051 23.7 11.7 19 344-362 97-115 (118)
431 COG1592 Rubrerythrin [Energy p 38.9 15 0.00033 33.0 1.1 11 131-141 135-145 (166)
432 KOG4552 Vitamin-D-receptor int 38.8 3.3E+02 0.0072 25.4 14.0 12 349-360 87-98 (272)
433 PF10226 DUF2216: Uncharacteri 38.6 3.2E+02 0.0069 25.1 16.5 22 344-365 109-130 (195)
434 cd00632 Prefoldin_beta Prefold 38.1 2.2E+02 0.0047 23.1 11.7 15 350-364 84-98 (105)
435 COG3096 MukB Uncharacterized p 38.1 5.4E+02 0.012 28.9 12.4 105 261-369 525-635 (1480)
436 PF03310 Cauli_DNA-bind: Cauli 38.0 2.5E+02 0.0055 23.8 8.2 10 383-392 72-81 (121)
437 PF07058 Myosin_HC-like: Myosi 38.0 4.1E+02 0.009 26.3 10.8 7 362-368 110-116 (351)
438 PRK13729 conjugal transfer pil 38.0 2.1E+02 0.0045 30.1 9.2 13 347-359 108-120 (475)
439 PF02891 zf-MIZ: MIZ/SP-RING z 37.8 13 0.00027 26.4 0.3 40 95-138 3-49 (50)
440 KOG3915 Transcription regulato 37.7 5.1E+02 0.011 27.2 12.5 28 10-37 227-258 (641)
441 PF14197 Cep57_CLD_2: Centroso 37.4 1.8E+02 0.004 22.0 10.1 26 300-325 8-33 (69)
442 KOG0241 Kinesin-like protein [ 37.4 5.4E+02 0.012 29.8 12.5 33 249-281 584-616 (1714)
443 KOG3113 Uncharacterized conser 37.4 17 0.00036 34.7 1.1 49 93-141 110-158 (293)
444 PF05010 TACC: Transforming ac 37.3 3.5E+02 0.0075 25.2 19.8 18 249-266 41-58 (207)
445 PF12777 MT: Microtubule-bindi 37.3 4.2E+02 0.0092 26.4 11.4 9 351-359 299-307 (344)
446 PF06005 DUF904: Protein of un 37.2 1.9E+02 0.0041 22.2 11.4 35 298-332 19-53 (72)
447 TIGR01661 ELAV_HUD_SF ELAV/HuD 37.2 48 0.001 32.7 4.5 55 2-57 282-337 (352)
448 KOG3579 Predicted E3 ubiquitin 37.1 19 0.0004 35.0 1.4 34 92-127 266-301 (352)
449 KOG3362 Predicted BBOX Zn-fing 37.1 15 0.00033 31.9 0.8 33 142-175 115-148 (156)
450 smart00361 RRM_1 RNA recogniti 36.9 58 0.0013 24.2 3.9 54 4-58 3-64 (70)
451 PF04216 FdhE: Protein involve 36.8 8.6 0.00019 37.5 -0.9 44 93-138 171-219 (290)
452 COG1382 GimC Prefoldin, chaper 36.8 2.6E+02 0.0057 23.7 11.1 10 353-362 87-96 (119)
453 KOG2077 JNK/SAPK-associated pr 36.8 3.5E+02 0.0075 29.2 10.5 85 297-381 301-388 (832)
454 COG5613 Uncharacterized conser 36.7 4.6E+02 0.01 26.5 11.4 22 326-347 345-366 (400)
455 PF07851 TMPIT: TMPIT-like pro 36.7 3.7E+02 0.008 26.9 10.5 69 293-361 7-79 (330)
456 KOG0979 Structural maintenance 36.7 7.2E+02 0.016 28.7 14.6 13 93-105 56-68 (1072)
457 smart00647 IBR In Between Ring 36.6 31 0.00066 24.9 2.3 19 111-129 40-59 (64)
458 PRK13169 DNA replication intia 36.6 2E+02 0.0044 24.0 7.4 31 305-335 23-53 (110)
459 PRK13460 F0F1 ATP synthase sub 36.2 3.1E+02 0.0067 24.4 16.1 20 261-280 41-60 (173)
460 PF11180 DUF2968: Protein of u 36.2 3.5E+02 0.0075 24.9 14.7 38 322-363 144-181 (192)
461 PF09789 DUF2353: Uncharacteri 36.1 4.5E+02 0.0098 26.2 16.7 9 352-360 198-206 (319)
462 PF10212 TTKRSYEDQ: Predicted 35.7 5.7E+02 0.012 27.2 16.7 21 263-283 423-443 (518)
463 PF10146 zf-C4H2: Zinc finger- 35.6 3.9E+02 0.0084 25.3 15.4 12 298-309 54-65 (230)
464 PF04102 SlyX: SlyX; InterPro 35.6 1.9E+02 0.0042 21.7 7.5 8 355-362 44-51 (69)
465 KOG0018 Structural maintenance 35.6 6.4E+02 0.014 29.3 13.0 106 253-366 767-872 (1141)
466 PF09798 LCD1: DNA damage chec 35.4 2.2E+02 0.0048 31.2 9.4 64 260-328 1-64 (654)
467 PF02403 Seryl_tRNA_N: Seryl-t 35.4 2.3E+02 0.0051 22.8 7.7 68 264-337 33-100 (108)
468 KOG3799 Rab3 effector RIM1 and 35.4 18 0.00039 31.2 0.9 50 89-138 60-115 (169)
469 PF14643 DUF4455: Domain of un 35.2 5.5E+02 0.012 26.9 13.7 96 266-362 3-98 (473)
470 KOG4593 Mitotic checkpoint pro 35.0 6.6E+02 0.014 27.8 17.5 113 257-374 109-221 (716)
471 PRK06568 F0F1 ATP synthase sub 35.0 3.2E+02 0.007 24.2 16.1 97 261-362 29-127 (154)
472 TIGR01628 PABP-1234 polyadenyl 35.0 51 0.0011 35.1 4.6 57 1-58 297-353 (562)
473 PF04156 IncA: IncA protein; 34.8 3.3E+02 0.0073 24.3 14.4 89 255-343 101-190 (191)
474 PLN02939 transferase, transfer 34.7 7.8E+02 0.017 28.5 17.8 123 241-363 238-396 (977)
475 PF05266 DUF724: Protein of un 34.6 3.6E+02 0.0079 24.7 13.1 89 264-354 100-188 (190)
476 KOG1850 Myosin-like coiled-coi 34.2 4.9E+02 0.011 26.0 17.5 148 250-400 205-362 (391)
477 PRK13453 F0F1 ATP synthase sub 34.2 3.4E+02 0.0073 24.2 16.1 98 261-362 43-141 (173)
478 PF09727 CortBP2: Cortactin-bi 34.2 3.8E+02 0.0082 24.7 14.9 99 259-366 84-182 (192)
479 KOG2391 Vacuolar sorting prote 34.1 5E+02 0.011 26.1 11.1 83 295-384 212-294 (365)
480 KOG4593 Mitotic checkpoint pro 34.0 6.8E+02 0.015 27.6 17.2 114 262-375 153-273 (716)
481 PF09457 RBD-FIP: FIP domain ; 33.9 1.2E+02 0.0026 21.4 4.7 30 339-368 3-32 (48)
482 PF15616 TerY-C: TerY-C metal 33.9 29 0.00062 29.9 2.0 52 77-136 60-111 (131)
483 PRK07353 F0F1 ATP synthase sub 33.8 2.9E+02 0.0064 23.3 16.1 98 261-362 30-128 (140)
484 PF08826 DMPK_coil: DMPK coile 33.7 2E+02 0.0043 21.4 8.1 50 291-340 12-61 (61)
485 KOG1265 Phospholipase C [Lipid 33.7 7.8E+02 0.017 28.2 17.3 126 243-373 1051-1176(1189)
486 smart00249 PHD PHD zinc finger 33.5 34 0.00074 22.5 2.0 40 96-136 1-47 (47)
487 PF04859 DUF641: Plant protein 33.4 3.2E+02 0.0069 23.6 10.2 66 300-365 41-123 (131)
488 CHL00118 atpG ATP synthase CF0 33.3 3.3E+02 0.0071 23.8 16.9 105 261-369 47-152 (156)
489 PF09538 FYDLN_acid: Protein o 32.9 31 0.00067 28.7 2.0 29 128-166 6-35 (108)
490 PRK00888 ftsB cell division pr 32.9 1.8E+02 0.0039 23.9 6.5 48 298-345 28-75 (105)
491 PRK06975 bifunctional uroporph 32.9 3.7E+02 0.0081 29.5 10.8 68 295-362 344-411 (656)
492 KOG1815 Predicted E3 ubiquitin 32.8 31 0.00068 35.9 2.5 93 95-188 164-257 (444)
493 PF15294 Leu_zip: Leucine zipp 32.7 4.3E+02 0.0094 25.8 10.0 74 294-367 129-207 (278)
494 TIGR01837 PHA_granule_1 poly(h 32.7 3E+02 0.0065 23.1 11.1 97 244-343 18-114 (118)
495 PF05130 FlgN: FlgN protein; 32.6 2.8E+02 0.0061 22.8 11.9 111 261-371 6-130 (143)
496 COG4985 ABC-type phosphate tra 32.5 3.1E+02 0.0068 26.1 8.5 66 246-317 176-241 (289)
497 KOG1609 Protein involved in mR 32.4 22 0.00047 34.7 1.1 52 89-140 73-133 (323)
498 TIGR00686 phnA alkylphosphonat 32.3 21 0.00046 29.6 0.9 20 146-165 3-27 (109)
499 PF10458 Val_tRNA-synt_C: Valy 32.2 2.1E+02 0.0046 21.2 6.4 64 295-362 2-65 (66)
500 PRK13729 conjugal transfer pil 32.1 2.7E+02 0.0059 29.3 9.0 59 292-350 64-122 (475)
No 1
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=100.00 E-value=3.4e-99 Score=735.60 Aligned_cols=391 Identities=54% Similarity=0.936 Sum_probs=340.8
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccccCCCceeEEEEEeeEEEeccCCC
Q 015426 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFNSLEEEVCHVLFTVDVQFTGYTGS 80 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~~l~~~~c~~v~v~~v~~~~~~~~ 80 (407)
||++|||+|+++|..+|.+||||| |++||+|||||+|++|++|+.||.+|||++||++++++||++||.+|+++.+..
T Consensus 86 mt~~Dll~F~~~~~~~I~~irivR-d~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e~Chll~V~~ve~~~s~d- 163 (493)
T KOG0804|consen 86 MTSHDLLRFCASFIKQISDIRIVR-DGMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPEVCHLLYVDRVEVTESED- 163 (493)
T ss_pred ccHHHHHHHHHHHhhhhheeEEee-cCCCceEEEEEEeccchhHHHHHHHcCCCcCCCCCccceeEEEEEEEEEEeccc-
Confidence 899999999999999999999999 999999999999999999999999999999999999999999999999995433
Q ss_pred CCcCCCCCCCCCCCCcccccccccccCCCceeeecCCCccchhccccccCCCCCCcccccCCC--CccceeecccCCCcc
Q 015426 81 LEHVQPAPASSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQQQP--EKSICFVCQTSENLW 158 (407)
Q Consensus 81 ~~~~~~~~~~~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~~~--~~~~C~~C~~~~~l~ 158 (407)
.+.+++++++|+||||||||+||++++|++++.|+|+||..|+..|++.+||+||+...|. +...|..|+..++||
T Consensus 164 --~as~~~~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~scpvcR~~q~p~~ve~~~c~~c~~~~~Lw 241 (493)
T KOG0804|consen 164 --GASEPPTGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDSSCPVCRYCQSPSVVESSLCLACGCTEDLW 241 (493)
T ss_pred --CCCCCCCCcccCCCcchhHhhcCccccceeeeecccccchHHHhhcccCcChhhhhhcCcchhhhhhhhhhcccccEE
Confidence 3444566789999999999999999999999999999999999999999999999987621 578999999999999
Q ss_pred cccccCccccccCCccccccccccCCceeEeecCceeEEeccCCcchhhhhhhcccCceeeecccCCCC-CCCCCCCCCC
Q 015426 159 MCVICGFVGCGRYKGGHAIIHWKETEHCYSLELETQRVWDYAGDNYVHRLIQSKTDGKLVELNSHCLHG-KDNCGSCDCV 237 (407)
Q Consensus 159 ~Cl~Cg~~~Cgr~~~~Ha~~H~~~t~H~~~~~l~~~~v~cy~cd~~vhrl~~~~~dgkl~e~~~~~~~~-~~~~~~~~~~ 237 (407)
+|++||++|||||..+||++||++|+|+|+|+++|+|||||++|+|||||+++++|||+|+....+..+ .+.++.+...
T Consensus 242 icliCg~vgcgrY~eghA~rHweet~H~yalel~tqrVWDYAGDnYVhRl~~~~~dGklve~~~~~~~~~~~~~~~~~~~ 321 (493)
T KOG0804|consen 242 ICLICGNVGCGRYKEGHARRHWEETGHCYALELETQRVWDYAGDNYVHRLPQSKTDGKLVESSTEGDDSRKDDCDSLELE 321 (493)
T ss_pred EEEEccceecccccchhHHHHHHhhcceEEEeecceeeeecccchhhhhccccCCCCceEEeccccccccccCcceEEee
Confidence 999999999999999999999999999999999999999999999999999999999999999888663 2333333333
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015426 238 DSGTSDALLSSKVEAIVNEYNELLAAQLENQKIYYETLLQEAKE-ETEKIISEAVKKAIAQKLQKMQAKLDRCVREKKFL 316 (407)
Q Consensus 238 ~~~~~~~~~~~k~~~~~~ey~~lL~~qle~qr~~~E~~l~~l~~-~~~~~l~~~~~~~~~~~l~~l~~~l~~~~~e~~~l 316 (407)
.+.+.....+....-....+..+.++||+.||+||+.++.++.. +.+....++..+.++.++++++.+++++.+|++++
T Consensus 322 ~s~ll~sqleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~ 401 (493)
T KOG0804|consen 322 YSPLLTSQLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEE 401 (493)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344445557888888888888777766 55556667788889999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhHHHHhhhccccCCCCcEEeecCCCCCCC
Q 015426 317 DDLNENLLKNQEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDLMAYLEAEKTLQQLSISNEIKDGTVLPMSVESSTS 396 (407)
Q Consensus 317 ~eln~~l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dLm~~l~~~~~~~~~~~~~ei~~G~v~~~~~~~~~~ 396 (407)
+|+|+.|.+|+..|+.++++++++.+.++..++++|+||+||+|||||||++|+||+ ++.++|++|||++.+.+++++
T Consensus 402 ~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~qqklk--~dt~eIqegtI~~~~~s~~~~ 479 (493)
T KOG0804|consen 402 REENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLEAQQKLK--SDTDEIQEGTILITQISPSSS 479 (493)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhhhhhhh--cchhhhcCceeeccCCCCCcc
Confidence 999999999999999999999999999999999999999999999999999999998 445599999998775554443
Q ss_pred C
Q 015426 397 T 397 (407)
Q Consensus 397 ~ 397 (407)
+
T Consensus 480 ~ 480 (493)
T KOG0804|consen 480 S 480 (493)
T ss_pred c
Confidence 3
No 2
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=99.90 E-value=5.6e-24 Score=176.79 Aligned_cols=80 Identities=50% Similarity=0.857 Sum_probs=71.8
Q ss_pred CChhHHh-HhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccccCCCceeEEEEEeeEEEeccCC
Q 015426 1 MTYADFC-QFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFNSLEEEVCHVLFTVDVQFTGYTG 79 (407)
Q Consensus 1 ~~~~d~~-~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~~l~~~~c~~v~v~~v~~~~~~~ 79 (407)
|++.||| .|.+++.+.|+++|||| |++||||||||+|+++.+|++||..|||++||++|+++||+|||.+|++.....
T Consensus 24 ~~~~d~l~~f~~~~~~~i~~~riir-d~~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~ChvvfV~~Ve~~~~~~ 102 (110)
T PF07576_consen 24 MTPSDFLLFFGAPFREDIEHIRIIR-DGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVVFVKSVEFTSSAE 102 (110)
T ss_pred cccHHHHHHhhhcccccEEEEEEee-CCCCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEEEEEEEEEEcccc
Confidence 5666665 55566889999999999 889999999999999999999999999999999999999999999999998655
Q ss_pred CC
Q 015426 80 SL 81 (407)
Q Consensus 80 ~~ 81 (407)
..
T Consensus 103 ~~ 104 (110)
T PF07576_consen 103 GA 104 (110)
T ss_pred cc
Confidence 43
No 3
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=99.50 E-value=4.4e-15 Score=111.82 Aligned_cols=60 Identities=52% Similarity=1.172 Sum_probs=52.6
Q ss_pred eeecccC-CCcccccccCccccccCCccccccccccCCceeEeecCceeEEeccCCcchhh
Q 015426 148 CFVCQTS-ENLWMCVICGFVGCGRYKGGHAIIHWKETEHCYSLELETQRVWDYAGDNYVHR 207 (407)
Q Consensus 148 C~~C~~~-~~l~~Cl~Cg~~~Cgr~~~~Ha~~H~~~t~H~~~~~l~~~~v~cy~cd~~vhr 207 (407)
|..|+.. .++|+||+||.+|||++..+|+..|+++++|++++.+.+..||||.|++||..
T Consensus 1 C~~C~~~~~~lw~CL~Cg~~~C~~~~~~Ha~~H~~~~~H~l~v~~~~~~i~C~~C~~~v~~ 61 (63)
T PF02148_consen 1 CSVCGSTNSNLWLCLTCGYVGCGRYSNGHALKHYKETGHPLAVSLSTGSIWCYACDDYVYD 61 (63)
T ss_dssp -SSSHTCSSSEEEETTTS-EEETTTSTSHHHHHHHHHT--EEEETTTTCEEETTTTEEEES
T ss_pred CCCCCCcCCceEEeCCCCcccccCCcCcHHHHhhcccCCeEEEECCCCeEEEcCCCcEEeC
Confidence 6678766 89999999999999999999999999999999999999999999999999863
No 4
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=2e-11 Score=126.10 Aligned_cols=64 Identities=42% Similarity=0.884 Sum_probs=59.5
Q ss_pred CCCccceeecccCCCcccccccCccccccCC------ccccccccccCCceeEeecC-----ceeEEeccCCcch
Q 015426 142 QPEKSICFVCQTSENLWMCVICGFVGCGRYK------GGHAIIHWKETEHCYSLELE-----TQRVWDYAGDNYV 205 (407)
Q Consensus 142 ~~~~~~C~~C~~~~~l~~Cl~Cg~~~Cgr~~------~~Ha~~H~~~t~H~~~~~l~-----~~~v~cy~cd~~v 205 (407)
++.+..|..|+.++|||+||+||.++|||.. ++||..||.+|+|++++.|. +..||||.||..|
T Consensus 176 ~~~gwkCs~CDL~~NLWlcLtcG~v~CGR~qfg~~GgNgHA~~HYr~tghPLaVKLgsIs~dg~DvycY~cDd~v 250 (763)
T KOG0944|consen 176 PPSGWKCSKCDLTENLWLCLTCGSVGCGRKQFGGSGGNGHALSHYRETGHPLAVKLGSISPDGADVYCYDCDDEV 250 (763)
T ss_pred CCCcceecccCcccceEEEeccCceeecceeecCCCCCcchHHhhhhcCCceEEEecccCCCccceeeecccccc
Confidence 5678999999999999999999999999864 89999999999999999997 4789999999998
No 5
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=9.1e-11 Score=117.83 Aligned_cols=62 Identities=37% Similarity=0.891 Sum_probs=57.0
Q ss_pred CccceeecccCCCcccccccCccccccCC-----ccccccccccCCceeEeecC-----ceeEEeccCCcch
Q 015426 144 EKSICFVCQTSENLWMCVICGFVGCGRYK-----GGHAIIHWKETEHCYSLELE-----TQRVWDYAGDNYV 205 (407)
Q Consensus 144 ~~~~C~~C~~~~~l~~Cl~Cg~~~Cgr~~-----~~Ha~~H~~~t~H~~~~~l~-----~~~v~cy~cd~~v 205 (407)
....|+.|+...+||+|+.||++||||-+ ++||..||.+++|++++.+. +-.+|||.||..+
T Consensus 172 ~~~~Cs~CDl~~nLW~Cl~CG~vgCGR~QyG~~GngHAlsHY~~t~Hplavkl~Sls~~~~diyCY~CD~e~ 243 (749)
T COG5207 172 GGLKCSLCDLKTNLWVCLSCGYVGCGRMQYGAEGNGHALSHYEETQHPLAVKLPSLSKEDCDIYCYLCDSEI 243 (749)
T ss_pred CCceeccccchhceEEEEecCcccccceeecCCCCcchhhhhhccCCceEEEccccccccccEEEEecCccc
Confidence 46899999999999999999999999864 89999999999999999986 5789999999885
No 6
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.90 E-value=2.8e-10 Score=79.26 Aligned_cols=42 Identities=45% Similarity=1.172 Sum_probs=35.0
Q ss_pred CcccccccccccCCCceeeecCCCccchhccccccC--CCCCCcc
Q 015426 95 PSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD--SSCPVCR 137 (407)
Q Consensus 95 ~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr 137 (407)
..|+||++.|.. ...++.++|+|.||..|+..|.. .+||+||
T Consensus 1 d~C~IC~~~~~~-~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFED-GEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHT-TSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcC-CCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 379999999974 44577889999999999999964 8999997
No 7
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.85 E-value=7.4e-10 Score=76.36 Aligned_cols=36 Identities=39% Similarity=0.979 Sum_probs=28.6
Q ss_pred ccccccccccCCCceeeecCCCccchhccccccC------CCCCCc
Q 015426 97 CPVCLERLDQDTSGILTTICNHSFHCSCISKWTD------SSCPVC 136 (407)
Q Consensus 97 C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~------~~CP~C 136 (407)
||||++.|.+ |++++|||+||..||..|+. ..||.|
T Consensus 1 CpiC~~~~~~----Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD----PVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS----EEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC----ccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999998 99999999999999999853 368887
No 8
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=98.75 E-value=3.4e-09 Score=75.82 Aligned_cols=49 Identities=57% Similarity=1.117 Sum_probs=44.9
Q ss_pred ceeecccCCCcccccccCccccccCCccccccccccCCceeEeecCcee
Q 015426 147 ICFVCQTSENLWMCVICGFVGCGRYKGGHAIIHWKETEHCYSLELETQR 195 (407)
Q Consensus 147 ~C~~C~~~~~l~~Cl~Cg~~~Cgr~~~~Ha~~H~~~t~H~~~~~l~~~~ 195 (407)
+|..|+...++|+||.|+.++|+++...|+..|+..++|++.+.+.+++
T Consensus 1 ~C~~C~~~~~l~~CL~C~~~~c~~~~~~h~~~H~~~t~H~~~~~~~~~~ 49 (50)
T smart00290 1 RCSVCGTIENLWLCLTCGQVGCGRYQLGHALEHFEETGHPLVVKLGTQR 49 (50)
T ss_pred CcccCCCcCCeEEecCCCCcccCCCCCcHHHHHhhhhCCCEEEEccccc
Confidence 4888998889999999999999999999999999999999999887654
No 9
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=5.6e-09 Score=102.59 Aligned_cols=58 Identities=29% Similarity=0.679 Sum_probs=47.3
Q ss_pred CcccccccccccCCCceeeecCCCccchhccccccC---CCCCCcccccCCCCccceeeccc
Q 015426 95 PSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD---SSCPVCRYCQQQPEKSICFVCQT 153 (407)
Q Consensus 95 ~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~---~~CP~Cr~~~~~~~~~~C~~C~~ 153 (407)
.+|+||||.|.. ...++.|||.|.||..||++|.. ..||+|+.....+....+..++.
T Consensus 230 ~~CaIClEdY~~-GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~~~~~~e~t 290 (348)
T KOG4628|consen 230 DTCAICLEDYEK-GDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSGSEPVSEDT 290 (348)
T ss_pred ceEEEeeccccc-CCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCCCCCCccCCC
Confidence 499999999995 44577899999999999999964 56999999877666666666633
No 10
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.70 E-value=4e-07 Score=90.90 Aligned_cols=93 Identities=20% Similarity=0.347 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015426 247 SSKVEAIVNEYNELLAAQLENQKIYYETLLQEAKE-ETEKIISEAVKKAIAQKLQKMQAKLDRCVREKKFLDDLNENLLK 325 (407)
Q Consensus 247 ~~k~~~~~~ey~~lL~~qle~qr~~~E~~l~~l~~-~~~~~l~~~~~~~~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~ 325 (407)
..+.+.+..+|..+|++||++||.|||..+.++.+ +.+. ..+..+ ...+....+++....++.+.+.++.....+..
T Consensus 312 ~~~~~~~~~~~s~ll~sqleSqr~y~e~~~~e~~qsqlen-~k~~~e-~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~ 389 (493)
T KOG0804|consen 312 KDDCDSLELEYSPLLTSQLESQRKYYEQIMSEYEQSQLEN-QKQYYE-LLITEADSLKQESSDLEAEKKIVERKLQQLQT 389 (493)
T ss_pred ccCcceEEeecchhhhhhhhHHHHHHHHHHHHHHHHHHHh-HHHHHH-HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 45678888899999999999999999988888876 2211 111111 12234444555555555555554444444444
Q ss_pred hHHHHHHHHHHHHHHH
Q 015426 326 NQEMWKAKISEIEERE 341 (407)
Q Consensus 326 ~~~~l~~kl~~~~~~~ 341 (407)
.++.|..++....+..
T Consensus 390 k~~k~~kel~~~~E~n 405 (493)
T KOG0804|consen 390 KLKKCQKELKEEREEN 405 (493)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555544433
No 11
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=98.61 E-value=2.1e-08 Score=103.69 Aligned_cols=64 Identities=30% Similarity=0.460 Sum_probs=59.9
Q ss_pred CCCccceeecccCCCcccccccCccccccCCccccccccccCCceeEeecCceeEEeccCCcch
Q 015426 142 QPEKSICFVCQTSENLWMCVICGFVGCGRYKGGHAIIHWKETEHCYSLELETQRVWDYAGDNYV 205 (407)
Q Consensus 142 ~~~~~~C~~C~~~~~l~~Cl~Cg~~~Cgr~~~~Ha~~H~~~t~H~~~~~l~~~~v~cy~cd~~v 205 (407)
-.....|..|....++|.||+||.+.||+..+.||..|+.+++|.+++.+.++++|||.|+.+|
T Consensus 13 fd~e~~C~~~~~~~n~~~CL~cg~~~~g~~~~~ha~~H~~~~~H~~~v~l~t~~~yc~~~~~~v 76 (440)
T cd02669 13 FDFEKVCSVSLSNLNVYACLVCGKYFQGRGKGSHAYTHSLEDNHHVFLNLETLKFYCLPDNYEI 76 (440)
T ss_pred ccccccccccCCCCcEEEEcccCCeecCCCCCcHHHHHhhccCCCEEEECCCCCEEEeCCCCEE
Confidence 3445679999999999999999999999999999999999999999999999999999999999
No 12
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.55 E-value=2.7e-08 Score=90.08 Aligned_cols=46 Identities=35% Similarity=0.870 Sum_probs=40.0
Q ss_pred CCCCcccccccccccCCCceeeecCCCccchhccccccC------------------CCCCCcccccC
Q 015426 92 TEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD------------------SSCPVCRYCQQ 141 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~------------------~~CP~Cr~~~~ 141 (407)
.+...||||++.+.+ |++++|+|.||..||..|.. ..||+||..+.
T Consensus 16 ~~~~~CpICld~~~d----PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 16 GGDFDCNICLDQVRD----PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CCccCCccCCCcCCC----cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 467899999999887 88899999999999999942 47999999876
No 13
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.55 E-value=2.7e-08 Score=93.65 Aligned_cols=50 Identities=30% Similarity=0.754 Sum_probs=39.8
Q ss_pred CCCCcccccccccccCCC----ceeeecCCCccchhccccccC--CCCCCcccccC
Q 015426 92 TEQPSCPVCLERLDQDTS----GILTTICNHSFHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~----~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
.....||||++.+.+... -+++++|+|.||..||..|.. .+||+||..+.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 356899999998764321 135678999999999999965 79999999764
No 14
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=3.9e-08 Score=93.41 Aligned_cols=125 Identities=21% Similarity=0.382 Sum_probs=72.6
Q ss_pred HHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccccCCCc--eeEE-EEEeeEEEeccCCCC
Q 015426 5 DFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFNSLEEE--VCHV-LFTVDVQFTGYTGSL 81 (407)
Q Consensus 5 d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~~l~~~--~c~~-v~v~~v~~~~~~~~~ 81 (407)
.|+.|+..|+.++.-++.+. +.-++.-...|+.+--|.+|+-.-+- .=++ .|-+++.++..+...
T Consensus 240 mfwP~l~~fv~s~~~~~~~p------------~i~~~~~~~~~~t~sk~~rf~~~l~~~~~f~~gfyS~~e~ip~~t~~g 307 (374)
T COG5540 240 MFWPRLSRFVGSRGFRVVFP------------RIPSQELRFLFLTQSKGSRFNIILEIQINFDVGFYSSSEAIPTTTTKG 307 (374)
T ss_pred cccchheeecCceeEEEEee------------chhHHHHHHHHhhhcCCceeEEEeehheehhhheeeccccccccccCc
Confidence 36667766666544444433 22344555566777777777643221 1112 222233323322211
Q ss_pred CcCCCC---CCCCCCCCcccccccccccCCCceeeecCCCccchhccccccC---CCCCCcccccCC
Q 015426 82 EHVQPA---PASSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD---SSCPVCRYCQQQ 142 (407)
Q Consensus 82 ~~~~~~---~~~~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~---~~CP~Cr~~~~~ 142 (407)
...+.+ .....-...|+||++.|-. ....+++||.|.||..|+.+|.. ..||+||..++|
T Consensus 308 ~lkpls~e~~~ea~~GveCaICms~fiK-~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 308 SLKPLSIERAVEADKGVECAICMSNFIK-NDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceeechhHhHHhcCCCceEEEEhhhhcc-cceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 111111 0112234789999999963 34478999999999999999964 789999998753
No 15
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=9.5e-08 Score=100.31 Aligned_cols=52 Identities=35% Similarity=0.921 Sum_probs=47.3
Q ss_pred CCCcccccccCcccccc-CCcccccccccc---CCceeEeecCceeEEeccCCc-ch
Q 015426 154 SENLWMCVICGFVGCGR-YKGGHAIIHWKE---TEHCYSLELETQRVWDYAGDN-YV 205 (407)
Q Consensus 154 ~~~l~~Cl~Cg~~~Cgr-~~~~Ha~~H~~~---t~H~~~~~l~~~~v~cy~cd~-~v 205 (407)
...+|+||.||+.+||| ....|+..||.. +.||+.+.+.++.+|||.||+ .|
T Consensus 90 ~~~iWLCLkCG~q~CG~~~~~~halkH~~~~r~~~Hclvin~~n~~~WCy~Cd~kl~ 146 (877)
T KOG1873|consen 90 DNAIWLCLKCGYQGCGRNSESQHALKHFLTPRSEPHCLVINLINWLIWCYSCDAKLV 146 (877)
T ss_pred ccceeeecccCCeeeCCCcccchhhhhhcccCCCCeeEEEEeeeeeeEEEeccchhc
Confidence 34789999999999999 779999999986 589999999999999999999 44
No 16
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.43 E-value=9.7e-08 Score=73.97 Aligned_cols=44 Identities=39% Similarity=1.000 Sum_probs=33.8
Q ss_pred CCcccccccccccC---------CCceeeecCCCccchhccccccC--CCCCCcc
Q 015426 94 QPSCPVCLERLDQD---------TSGILTTICNHSFHCSCISKWTD--SSCPVCR 137 (407)
Q Consensus 94 ~~~C~iCle~~~~~---------~~~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr 137 (407)
...|+||++.|.+. .-.+...+|+|.||..||.+|.. .+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 45599999999432 12345678999999999999975 8999998
No 17
>PHA02926 zinc finger-like protein; Provisional
Probab=98.41 E-value=7.3e-08 Score=88.32 Aligned_cols=50 Identities=30% Similarity=0.713 Sum_probs=38.9
Q ss_pred CCCCcccccccccccC-----CCceeeecCCCccchhccccccC--------CCCCCcccccC
Q 015426 92 TEQPSCPVCLERLDQD-----TSGILTTICNHSFHCSCISKWTD--------SSCPVCRYCQQ 141 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~-----~~~~~~~~C~H~F~~~Cl~~w~~--------~~CP~Cr~~~~ 141 (407)
....+|+||+|...+. ..-.++.+|+|+||..||..|.. .+||+||..+.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 4679999999986431 11235789999999999999964 34999999765
No 18
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=9.2e-08 Score=90.74 Aligned_cols=46 Identities=37% Similarity=0.809 Sum_probs=41.0
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhccccccC--CCCCCcccccCC
Q 015426 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD--SSCPVCRYCQQQ 142 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~~ 142 (407)
..+.|.+|||-... |..+||||.||..||..|.. ..||+||..+++
T Consensus 238 a~~kC~LCLe~~~~----pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~p 285 (293)
T KOG0317|consen 238 ATRKCSLCLENRSN----PSATPCGHIFCWSCILEWCSEKAECPLCREKFQP 285 (293)
T ss_pred CCCceEEEecCCCC----CCcCcCcchHHHHHHHHHHccccCCCcccccCCC
Confidence 45899999999877 88999999999999999965 789999998863
No 19
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.39 E-value=1.2e-07 Score=67.92 Aligned_cols=45 Identities=29% Similarity=0.786 Sum_probs=37.3
Q ss_pred CCCcccccccccccCCCceeeecCCCc-cchhcccccc--CCCCCCcccccC
Q 015426 93 EQPSCPVCLERLDQDTSGILTTICNHS-FHCSCISKWT--DSSCPVCRYCQQ 141 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~-F~~~Cl~~w~--~~~CP~Cr~~~~ 141 (407)
|...|+||++.... ++.+||+|. ||..|+..|. ...||+||..+.
T Consensus 1 ~~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRD----VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSS----EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCc----eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 35689999999876 889999999 9999999994 589999998763
No 20
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.39 E-value=6.8e-08 Score=65.43 Aligned_cols=36 Identities=47% Similarity=1.166 Sum_probs=30.3
Q ss_pred ccccccccccCCCce-eeecCCCccchhcccccc--CCCCCCc
Q 015426 97 CPVCLERLDQDTSGI-LTTICNHSFHCSCISKWT--DSSCPVC 136 (407)
Q Consensus 97 C~iCle~~~~~~~~~-~~~~C~H~F~~~Cl~~w~--~~~CP~C 136 (407)
||||++.+.+ | +.++|||+||..|+..|. ...||+|
T Consensus 1 C~iC~~~~~~----~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD----PVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS----EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC----cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 8999999987 6 689999999999999995 3789987
No 21
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.39 E-value=1.1e-07 Score=95.84 Aligned_cols=55 Identities=27% Similarity=0.595 Sum_probs=47.1
Q ss_pred cCCCCCCCCCCCCcccccccccccCCCceeeecCCCccchhccccccC--CCCCCcccccC
Q 015426 83 HVQPAPASSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 83 ~~~~~~~~~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
++.+....+.....|+||++.|.. |++++|+|.||..||..|.. ..||+|+..+.
T Consensus 15 t~~~~l~~Le~~l~C~IC~d~~~~----PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~ 71 (397)
T TIGR00599 15 TPIPSLYPLDTSLRCHICKDFFDV----PVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQ 71 (397)
T ss_pred CCcccccccccccCCCcCchhhhC----ccCCCCCCchhHHHHHHHHhCCCCCCCCCCccc
Confidence 445666777888999999999987 78899999999999999864 57999999875
No 22
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.36 E-value=2e-07 Score=64.90 Aligned_cols=42 Identities=31% Similarity=0.806 Sum_probs=36.1
Q ss_pred cccccccccccCCCceeeecCCCccchhcccccc--CCCCCCccc
Q 015426 96 SCPVCLERLDQDTSGILTTICNHSFHCSCISKWT--DSSCPVCRY 138 (407)
Q Consensus 96 ~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~--~~~CP~Cr~ 138 (407)
.|+||.+.|. ....+.+++|+|+||..|+..+. ...||+|++
T Consensus 1 ~C~~C~~~~~-~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYS-EERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCcccc-CCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4999999993 34458899999999999999987 589999984
No 23
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.6e-07 Score=86.70 Aligned_cols=46 Identities=28% Similarity=0.766 Sum_probs=41.1
Q ss_pred CCCCcccccccccccCCCceeeecCCCccchhccccccC-----CCCCCcccccC
Q 015426 92 TEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD-----SSCPVCRYCQQ 141 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~-----~~CP~Cr~~~~ 141 (407)
.....|.||||.-.+ |+++.|||.||+.||-+|++ ..||||+..+.
T Consensus 45 ~~~FdCNICLd~akd----PVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKD----PVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred CCceeeeeeccccCC----CEEeecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence 456889999999887 99999999999999999975 57999998876
No 24
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.23 E-value=4.3e-05 Score=74.37 Aligned_cols=47 Identities=23% Similarity=0.650 Sum_probs=33.6
Q ss_pred CCcccccccc--cccCCCceeeecCCCccchhccccc-cC--CCCCCcccccC
Q 015426 94 QPSCPVCLER--LDQDTSGILTTICNHSFHCSCISKW-TD--SSCPVCRYCQQ 141 (407)
Q Consensus 94 ~~~C~iCle~--~~~~~~~~~~~~C~H~F~~~Cl~~w-~~--~~CP~Cr~~~~ 141 (407)
...||+|... +..+. ...+.+|||.||.+|+... .. ..||+|+..+.
T Consensus 3 ~~~CP~Ck~~~y~np~~-kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lr 54 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSL-KLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLR 54 (309)
T ss_pred CCCCCcCCCCCccCccc-ccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccc
Confidence 4689999984 33221 1223389999999999994 32 67999998764
No 25
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.22 E-value=2.8e-07 Score=62.89 Aligned_cols=36 Identities=42% Similarity=1.188 Sum_probs=31.8
Q ss_pred ccccccccccCCCcee-eecCCCccchhccccccC----CCCCCc
Q 015426 97 CPVCLERLDQDTSGIL-TTICNHSFHCSCISKWTD----SSCPVC 136 (407)
Q Consensus 97 C~iCle~~~~~~~~~~-~~~C~H~F~~~Cl~~w~~----~~CP~C 136 (407)
|+||++.+.. +. +++|+|.||..|+..|.. ..||+|
T Consensus 1 C~iC~~~~~~----~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFED----PVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSS----EEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccC----CCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 8999999987 66 999999999999999853 678887
No 26
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.21 E-value=2.5e-07 Score=63.91 Aligned_cols=33 Identities=27% Similarity=0.760 Sum_probs=22.1
Q ss_pred ccccccccccCCCceeeecCCCccchhccccccC
Q 015426 97 CPVCLERLDQDTSGILTTICNHSFHCSCISKWTD 130 (407)
Q Consensus 97 C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~ 130 (407)
||||.| |......|++|+|||+||.+|+.++..
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~ 33 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSK 33 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHh
Confidence 999999 876677789999999999999999853
No 27
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=4.6e-07 Score=80.29 Aligned_cols=48 Identities=29% Similarity=0.736 Sum_probs=39.6
Q ss_pred CCCCcccccccccccCCCceeeecCCCccchhccccccC--CCCCCcccccC
Q 015426 92 TEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
.....|||||+.+..-+ |+.+.|||.||..||..... ..||+|++.+.
T Consensus 129 ~~~~~CPiCl~~~sek~--~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt 178 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKV--PVSTKCGHVFCSQCIKDALKNTNKCPTCRKKIT 178 (187)
T ss_pred ccccCCCceecchhhcc--ccccccchhHHHHHHHHHHHhCCCCCCcccccc
Confidence 35678999999998633 67899999999999998754 88999997543
No 28
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.16 E-value=6.9e-07 Score=61.20 Aligned_cols=41 Identities=41% Similarity=1.081 Sum_probs=32.9
Q ss_pred cccccccccccCCCceeeecCCCccchhccccccC---CCCCCcccc
Q 015426 96 SCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD---SSCPVCRYC 139 (407)
Q Consensus 96 ~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~---~~CP~Cr~~ 139 (407)
+|+||++.+.. ...+++|+|.||..|+..|.. ..||+|+..
T Consensus 1 ~C~iC~~~~~~---~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFRE---PVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhC---ceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 59999999843 244556999999999999953 579999874
No 29
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=8.3e-07 Score=85.30 Aligned_cols=44 Identities=36% Similarity=0.870 Sum_probs=40.1
Q ss_pred CCCCCCcccccccccccCCCceeeecCCCccchhccccccC--CCCCCcc
Q 015426 90 SSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD--SSCPVCR 137 (407)
Q Consensus 90 ~~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr 137 (407)
...+..+||||++.|.. |.+++|+|+||..|+..++. ..||.||
T Consensus 9 ~~~~~~~C~iC~~~~~~----p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFRE----PVLLPCGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred hccccccChhhHHHhhc----CccccccchHhHHHHHHhcCCCcCCcccC
Confidence 44588999999999998 68999999999999999876 8999999
No 30
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.06 E-value=1.6e-06 Score=64.68 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=38.4
Q ss_pred CcccccccccccCCCceeeecCCCccchhccccccC--CCCCCcccccC
Q 015426 95 PSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 95 ~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
..||||.+.+.+ |++++|||+|+..||..|.. ..||+|+..+.
T Consensus 2 ~~Cpi~~~~~~~----Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKD----PVILPSGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCC----CEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 579999999997 88999999999999999963 78999998764
No 31
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.01 E-value=2.5e-06 Score=56.30 Aligned_cols=36 Identities=47% Similarity=1.253 Sum_probs=30.8
Q ss_pred ccccccccccCCCceeeecCCCccchhccccccC---CCCCCc
Q 015426 97 CPVCLERLDQDTSGILTTICNHSFHCSCISKWTD---SSCPVC 136 (407)
Q Consensus 97 C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~---~~CP~C 136 (407)
|+||++.... +..++|+|.||..|+..|.. ..||+|
T Consensus 1 C~iC~~~~~~----~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKD----PVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCC----cEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 8999998554 78899999999999999953 679987
No 32
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.97 E-value=4e-06 Score=62.24 Aligned_cols=45 Identities=33% Similarity=0.721 Sum_probs=27.3
Q ss_pred CCCCcccccccccccCCCcee-eecCCCccchhccccccCCCCCCccccc
Q 015426 92 TEQPSCPVCLERLDQDTSGIL-TTICNHSFHCSCISKWTDSSCPVCRYCQ 140 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~-~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~ 140 (407)
.++..|++|.+.|.+ |+ +..|.|.||..|+..-.+..||+|..+.
T Consensus 5 e~lLrCs~C~~~l~~----pv~l~~CeH~fCs~Ci~~~~~~~CPvC~~Pa 50 (65)
T PF14835_consen 5 EELLRCSICFDILKE----PVCLGGCEHIFCSSCIRDCIGSECPVCHTPA 50 (65)
T ss_dssp HHTTS-SSS-S--SS-----B---SSS--B-TTTGGGGTTTB-SSS--B-
T ss_pred HHhcCCcHHHHHhcC----CceeccCccHHHHHHhHHhcCCCCCCcCChH
Confidence 467899999999998 65 6899999999999888778899999864
No 33
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.95 E-value=1.4e-06 Score=84.12 Aligned_cols=53 Identities=26% Similarity=0.648 Sum_probs=46.0
Q ss_pred CCCCCCCCCCCcccccccccccCCCceeeecCCCccchhccccccC--CCCCCcccccC
Q 015426 85 QPAPASSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 85 ~~~~~~~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
.|++-.+..++.|.||.|+|.. |+.+||+|+||.-||...+. ..||.|+..+.
T Consensus 14 ipslk~lD~lLRC~IC~eyf~i----p~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~ 68 (442)
T KOG0287|consen 14 IPSLKTLDDLLRCGICFEYFNI----PMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVT 68 (442)
T ss_pred CchhhhhHHHHHHhHHHHHhcC----ceeccccchHHHHHHHHHhccCCCCCceecccc
Confidence 3445556789999999999998 89999999999999999864 88999999886
No 34
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.94 E-value=2.4e-06 Score=80.93 Aligned_cols=54 Identities=28% Similarity=0.533 Sum_probs=46.5
Q ss_pred CCCCCCCCCCCCcccccccccccCCCceeeecCCCccchhccccccC--CCCCCcccccC
Q 015426 84 VQPAPASSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 84 ~~~~~~~~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
..|+.-.+...+.|-||-++|.. |..++|||+||.-||...+. ..||+||..+.
T Consensus 15 ~IPSL~~LDs~lrC~IC~~~i~i----p~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 15 KIPSLKGLDSMLRCRICDCRISI----PCETTCGHTFCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred cCcchhcchhHHHhhhhhheeec----ceecccccchhHHHHHHHhcCCCCCccccccHH
Confidence 44566667788899999999997 89999999999999999864 88999998764
No 35
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=3e-06 Score=82.81 Aligned_cols=48 Identities=23% Similarity=0.751 Sum_probs=39.6
Q ss_pred CCCcccccccccccCC---------CceeeecCCCccchhccccccC--CCCCCccccc
Q 015426 93 EQPSCPVCLERLDQDT---------SGILTTICNHSFHCSCISKWTD--SSCPVCRYCQ 140 (407)
Q Consensus 93 e~~~C~iCle~~~~~~---------~~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~ 140 (407)
...+|.||+|.+-... ..|..+||||.||..|++.|.. .+||+||.++
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 6789999999954322 3467899999999999999964 8999999984
No 36
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.88 E-value=6.1e-06 Score=65.04 Aligned_cols=48 Identities=31% Similarity=0.768 Sum_probs=34.8
Q ss_pred CCcccccccccccC--------CC-ceeeecCCCccchhccccccC-----CCCCCcccccC
Q 015426 94 QPSCPVCLERLDQD--------TS-GILTTICNHSFHCSCISKWTD-----SSCPVCRYCQQ 141 (407)
Q Consensus 94 ~~~C~iCle~~~~~--------~~-~~~~~~C~H~F~~~Cl~~w~~-----~~CP~Cr~~~~ 141 (407)
...|+||...|+.. .. .++.-.|+|.||..||.+|.. ..||+||..+.
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 56666666666521 12 234568999999999999964 67999998753
No 37
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=97.81 E-value=0.00028 Score=70.48 Aligned_cols=30 Identities=27% Similarity=0.624 Sum_probs=27.8
Q ss_pred CCCCcccccccccccCCCceeeecCCCccchhcc
Q 015426 92 TEQPSCPVCLERLDQDTSGILTTICNHSFHCSCI 125 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl 125 (407)
.|.+.||||-..|.+ |+.++|+|+.|..|.
T Consensus 2 eeelkc~vc~~f~~e----piil~c~h~lc~~ca 31 (699)
T KOG4367|consen 2 EEELKCPVCGSFYRE----PIILPCSHNLCQACA 31 (699)
T ss_pred cccccCceehhhccC----ceEeecccHHHHHHH
Confidence 578999999999998 999999999999994
No 38
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.68 E-value=9e-06 Score=85.87 Aligned_cols=48 Identities=25% Similarity=0.540 Sum_probs=36.3
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhccccccC--CCCCCcccccC
Q 015426 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
....||+|+..+.+.. ...-.+|+|.||..|+..|.. .+||+||..|.
T Consensus 122 ~~~~CP~Ci~s~~DqL-~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~ 171 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQL-EESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFG 171 (1134)
T ss_pred hhhhhhHHHHHHHHHh-hccccccccccHHHHhhhhhhhcccCchhhhhhh
Confidence 3456888887775422 122458999999999999975 89999999885
No 39
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=1.5e-05 Score=81.28 Aligned_cols=45 Identities=36% Similarity=0.794 Sum_probs=37.4
Q ss_pred CCcccccccccccCCCceeeecCCCccchhccccccC-------CCCCCcccccCC
Q 015426 94 QPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD-------SSCPVCRYCQQQ 142 (407)
Q Consensus 94 ~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~-------~~CP~Cr~~~~~ 142 (407)
...|||||+.... |..+.|||.||..||-+.+. ..||+||..+..
T Consensus 186 ~~~CPICL~~~~~----p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSV----PVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCc----ccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 7899999999775 66777999999999977432 679999988864
No 40
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=2.9e-05 Score=73.16 Aligned_cols=45 Identities=36% Similarity=0.713 Sum_probs=38.7
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhcccc-ccC---CCCCCcccccC
Q 015426 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISK-WTD---SSCPVCRYCQQ 141 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~-w~~---~~CP~Cr~~~~ 141 (407)
..-.|+||++.... |.-++|||.||..||-. |.. ..||+||....
T Consensus 214 ~d~kC~lC~e~~~~----ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 214 ADYKCFLCLEEPEV----PSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred cccceeeeecccCC----cccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence 35689999999887 88999999999999998 853 55999998664
No 41
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.46 E-value=4.7e-05 Score=58.87 Aligned_cols=45 Identities=20% Similarity=0.417 Sum_probs=35.8
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhccccccC---CCCCCcccccC
Q 015426 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD---SSCPVCRYCQQ 141 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~---~~CP~Cr~~~~ 141 (407)
+...|||+.+.|.+ |+++++||+|...||..|.. ..||.|+..+.
T Consensus 3 ~~f~CpIt~~lM~d----PVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~ 50 (73)
T PF04564_consen 3 DEFLCPITGELMRD----PVILPSGHTYERSAIERWLEQNGGTDPFTRQPLS 50 (73)
T ss_dssp GGGB-TTTSSB-SS----EEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-S
T ss_pred cccCCcCcCcHhhC----ceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCC
Confidence 46789999999999 99999999999999999954 78999988664
No 42
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=4e-05 Score=81.43 Aligned_cols=48 Identities=33% Similarity=0.786 Sum_probs=39.9
Q ss_pred CCCcccccccccccCC-CceeeecCCCccchhccccccC--CCCCCccccc
Q 015426 93 EQPSCPVCLERLDQDT-SGILTTICNHSFHCSCISKWTD--SSCPVCRYCQ 140 (407)
Q Consensus 93 e~~~C~iCle~~~~~~-~~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~ 140 (407)
....|+||+|.+.... ..+..++|+|.||..|+..|.. .+||.||..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 4789999999997421 1267899999999999999964 9999999944
No 43
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.28 E-value=0.00012 Score=56.42 Aligned_cols=47 Identities=32% Similarity=0.723 Sum_probs=35.3
Q ss_pred CcccccccccccCCCcee-eecCCCccchhccccccC--CCCCCcccccC
Q 015426 95 PSCPVCLERLDQDTSGIL-TTICNHSFHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 95 ~~C~iCle~~~~~~~~~~-~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
.+||-|.-.++.+..-|+ --.|+|.||..||.+|++ ..||++|+.+.
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 456666665554444444 447999999999999986 89999998764
No 44
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=4.8e-05 Score=81.12 Aligned_cols=46 Identities=28% Similarity=0.621 Sum_probs=41.0
Q ss_pred CCCCcccccccccccCCCceeeecCCCccchhcccccc---CCCCCCcccccC
Q 015426 92 TEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWT---DSSCPVCRYCQQ 141 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~---~~~CP~Cr~~~~ 141 (407)
.+.++||+|-.+..+ .+.+.|+|.||..|+.+.. +..||.|...|+
T Consensus 641 K~~LkCs~Cn~R~Kd----~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFg 689 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKD----AVITKCGHVFCEECVQTRYETRQRKCPKCNAAFG 689 (698)
T ss_pred HhceeCCCccCchhh----HHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 478999999999987 7788999999999998874 388999999997
No 45
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.00038 Score=66.76 Aligned_cols=46 Identities=28% Similarity=0.656 Sum_probs=39.3
Q ss_pred CCCCcccccccccccCCCceeeecCCCccchhcccc--ccC-CCCCCcccccC
Q 015426 92 TEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISK--WTD-SSCPVCRYCQQ 141 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~--w~~-~~CP~Cr~~~~ 141 (407)
.-.+.|+||+...-- |+.++|+|.||.-||+. |.+ ..||+||..+.
T Consensus 5 ~~~~eC~IC~nt~n~----Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pid 53 (324)
T KOG0824|consen 5 TKKKECLICYNTGNC----PVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPID 53 (324)
T ss_pred ccCCcceeeeccCCc----CccccccchhhhhhhcchhhcCCCCCceecCCCC
Confidence 456899999998775 88999999999999987 444 67999999886
No 46
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.00034 Score=66.04 Aligned_cols=52 Identities=31% Similarity=0.758 Sum_probs=41.1
Q ss_pred CCCCCCcccccccccccCCC--c----eeeecCCCccchhcccccc----CCCCCCcccccC
Q 015426 90 SSTEQPSCPVCLERLDQDTS--G----ILTTICNHSFHCSCISKWT----DSSCPVCRYCQQ 141 (407)
Q Consensus 90 ~~~e~~~C~iCle~~~~~~~--~----~~~~~C~H~F~~~Cl~~w~----~~~CP~Cr~~~~ 141 (407)
...+...|+||-..++.+++ | .-.+.|+|+||..||..|- ...||-|+..+.
T Consensus 220 khl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 220 KHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 34577899999999886542 2 2378999999999999994 389999987653
No 47
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=96.92 E-value=0.00036 Score=49.68 Aligned_cols=40 Identities=25% Similarity=0.895 Sum_probs=31.1
Q ss_pred cccccccccccCCCceeeecCC-----CccchhccccccC----CCCCCcc
Q 015426 96 SCPVCLERLDQDTSGILTTICN-----HSFHCSCISKWTD----SSCPVCR 137 (407)
Q Consensus 96 ~C~iCle~~~~~~~~~~~~~C~-----H~F~~~Cl~~w~~----~~CP~Cr 137 (407)
.|-||++. . +...+...||. |.+|..|+.+|.. .+||+|.
T Consensus 1 ~CrIC~~~-~-~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDE-G-DEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCC-C-CCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 48999982 2 33457788996 7899999999963 5799984
No 48
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.02 Score=56.85 Aligned_cols=45 Identities=24% Similarity=0.854 Sum_probs=32.1
Q ss_pred CcccccccccccCCCcee-eecCCCccchhccccccC-----CCCCCccccc
Q 015426 95 PSCPVCLERLDQDTSGIL-TTICNHSFHCSCISKWTD-----SSCPVCRYCQ 140 (407)
Q Consensus 95 ~~C~iCle~~~~~~~~~~-~~~C~H~F~~~Cl~~w~~-----~~CP~Cr~~~ 140 (407)
..|.||-+.+.. +.... +-.|||.||..|+..|-. ..||+|+...
T Consensus 5 A~C~Ic~d~~p~-~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 5 AECHICIDGRPN-DHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred ceeeEeccCCcc-ccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 579999665553 33233 345999999999999943 4799998433
No 49
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.00039 Score=70.55 Aligned_cols=50 Identities=32% Similarity=0.821 Sum_probs=37.8
Q ss_pred CCCCcccccccccccCC-------------CceeeecCCCccchhccccccC---CCCCCcccccC
Q 015426 92 TEQPSCPVCLERLDQDT-------------SGILTTICNHSFHCSCISKWTD---SSCPVCRYCQQ 141 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~-------------~~~~~~~C~H~F~~~Cl~~w~~---~~CP~Cr~~~~ 141 (407)
.....|+||+...+.-. .....+||.|.||..|+.+|-+ ..||+||....
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 35568999998775311 1134579999999999999965 58999998764
No 50
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.54 E-value=0.00045 Score=52.97 Aligned_cols=48 Identities=25% Similarity=0.553 Sum_probs=21.6
Q ss_pred CCcccccccccccCCCcee----eecCCCccchhccccccC-------------CCCCCcccccC
Q 015426 94 QPSCPVCLERLDQDTSGIL----TTICNHSFHCSCISKWTD-------------SSCPVCRYCQQ 141 (407)
Q Consensus 94 ~~~C~iCle~~~~~~~~~~----~~~C~H~F~~~Cl~~w~~-------------~~CP~Cr~~~~ 141 (407)
...|+||...+.+....|. ...|+..||..||..|.. ..||.|+..+.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 4679999988663332232 247999999999999931 35999987653
No 51
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.00023 Score=69.67 Aligned_cols=49 Identities=35% Similarity=0.653 Sum_probs=39.0
Q ss_pred CCCCCCcccccccccccCCCceeeecCCCccchhccccc---cCCCCCCcccccC
Q 015426 90 SSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKW---TDSSCPVCRYCQQ 141 (407)
Q Consensus 90 ~~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w---~~~~CP~Cr~~~~ 141 (407)
.+.-...|||||+.+..+ ..+.-|.|.||.+||... ....||.||+...
T Consensus 39 ~~~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLV 90 (381)
T ss_pred HhhhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcc
Confidence 345678999999999862 346689999999999664 3489999998754
No 52
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.00045 Score=52.87 Aligned_cols=46 Identities=37% Similarity=0.849 Sum_probs=32.8
Q ss_pred ccccccccccc--------CCCcee-eecCCCccchhccccccC-----CCCCCcccccC
Q 015426 96 SCPVCLERLDQ--------DTSGIL-TTICNHSFHCSCISKWTD-----SSCPVCRYCQQ 141 (407)
Q Consensus 96 ~C~iCle~~~~--------~~~~~~-~~~C~H~F~~~Cl~~w~~-----~~CP~Cr~~~~ 141 (407)
+|.||.-.|+. +..-|+ .-.|.|.||..||.+|.. ..||+||+.++
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 66666666542 122233 337999999999999975 67999998764
No 53
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.38 E-value=0.48 Score=46.55 Aligned_cols=109 Identities=18% Similarity=0.338 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015426 246 LSSKVEAIVNEYNELLAAQLENQKIYYETLLQEAKEETEKIISEAVKKAIAQKLQKMQAKLDRCVREKKFLDDLNENLLK 325 (407)
Q Consensus 246 ~~~k~~~~~~ey~~lL~~qle~qr~~~E~~l~~l~~~~~~~l~~~~~~~~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~ 325 (407)
....+..+..+|...+..--+.-..+|..++.++....... ..++ ......+..+...+..+..++..++..|..|..
T Consensus 167 L~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~-~~~~-~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~ 244 (312)
T PF00038_consen 167 LSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKS-SEEL-ESAKEELKELRRQIQSLQAELESLRAKNASLER 244 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhhhhhhhhhhccccccccccccccc-cccc-chhHhHHHHHHhhhhHhhhhhhccccchhhhhh
Confidence 45667778888988888777777889999998887665221 1111 233445666666677777777766666666665
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 015426 326 NQEMWKAKISEIEEREKMALRAKDDKIQDSE 356 (407)
Q Consensus 326 ~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Le 356 (407)
....+...+..-.......+..++.+|..|.
T Consensus 245 ~l~~le~~~~~~~~~~~~~i~~le~el~~l~ 275 (312)
T PF00038_consen 245 QLRELEQRLDEEREEYQAEIAELEEELAELR 275 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 5555554444444444444444444443333
No 54
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.0023 Score=63.68 Aligned_cols=50 Identities=34% Similarity=0.848 Sum_probs=38.6
Q ss_pred CCCCcccccccccccCCC----ceeeecCCCccchhcccccc---------CCCCCCcccccC
Q 015426 92 TEQPSCPVCLERLDQDTS----GILTTICNHSFHCSCISKWT---------DSSCPVCRYCQQ 141 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~----~~~~~~C~H~F~~~Cl~~w~---------~~~CP~Cr~~~~ 141 (407)
....+|.||++...+... --++++|.|.||..|+..|. ...||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 467899999998875330 01246799999999999996 268999998654
No 55
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.0031 Score=62.96 Aligned_cols=46 Identities=33% Similarity=0.873 Sum_probs=37.2
Q ss_pred CCCcccccccccccCCCc-eeeecCCCccchhccccccC----CCCCCccc
Q 015426 93 EQPSCPVCLERLDQDTSG-ILTTICNHSFHCSCISKWTD----SSCPVCRY 138 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~-~~~~~C~H~F~~~Cl~~w~~----~~CP~Cr~ 138 (407)
...+|||||+.+.-++.. ++.+.|+|.|-.+||..|.. ..||.|..
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ 53 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSG 53 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCC
Confidence 346899999999765544 45889999999999999974 66888865
No 56
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.80 E-value=0.23 Score=46.78 Aligned_cols=44 Identities=23% Similarity=0.633 Sum_probs=32.7
Q ss_pred cccccccccccCCCceeeecCCCccchhccccccCCCCCCcccccC
Q 015426 96 SCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQQ 141 (407)
Q Consensus 96 ~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~ 141 (407)
-|..|.-.-. ..+.-++.|.|.||..|...-....||+|+..+.
T Consensus 5 hCn~C~~~~~--~~~f~LTaC~HvfC~~C~k~~~~~~C~lCkk~ir 48 (233)
T KOG4739|consen 5 HCNKCFRFPS--QDPFFLTACRHVFCEPCLKASSPDVCPLCKKSIR 48 (233)
T ss_pred EeccccccCC--CCceeeeechhhhhhhhcccCCccccccccceee
Confidence 4676765544 3345688999999999987765568999998753
No 57
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.0029 Score=64.17 Aligned_cols=46 Identities=33% Similarity=0.661 Sum_probs=40.1
Q ss_pred CCCCcccccccccccCCCceeeecCCCccchhccccccC--CCCCCcccccC
Q 015426 92 TEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
.....|.||...|.. |+++||||+||..||.+..+ ..||.||..+.
T Consensus 82 ~sef~c~vc~~~l~~----pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~ 129 (398)
T KOG4159|consen 82 RSEFECCVCSRALYP----PVVTPCGHSFCLECLDRSLDQETECPLCRDELV 129 (398)
T ss_pred cchhhhhhhHhhcCC----CccccccccccHHHHHHHhccCCCCcccccccc
Confidence 466789999999987 88999999999999888654 78999999875
No 58
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.45 E-value=1.6 Score=42.86 Aligned_cols=110 Identities=20% Similarity=0.282 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 015426 261 LAAQLENQKIYYETLLQEAKEETEKIISEAVKK------AIAQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKI 334 (407)
Q Consensus 261 L~~qle~qr~~~E~~l~~l~~~~~~~l~~~~~~------~~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl 334 (407)
|...|..-|..|+..+...+.+.+......+.. .....+..+...+..+...+..+..--..|......+..++
T Consensus 167 L~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l 246 (312)
T PF00038_consen 167 LSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQL 246 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhH
Confidence 566666666666666665554443322222111 11222333334444444444444444445555667788888
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhHH
Q 015426 335 SEIEEREKMALRAKDDKIQDSEAQLRDLMAYLEAEK 370 (407)
Q Consensus 335 ~~~~~~~~~~~~~~~~~i~~Leeq~~dLm~~l~~~~ 370 (407)
.+++.+........+..|..|+.++..|..-+..+.
T Consensus 247 ~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~ 282 (312)
T PF00038_consen 247 RELEQRLDEEREEYQAEIAELEEELAELREEMARQL 282 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence 888888888888889999999999999888876654
No 59
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=95.04 E-value=0.011 Score=60.37 Aligned_cols=50 Identities=34% Similarity=0.741 Sum_probs=42.1
Q ss_pred CCCCCcccccccccccCCCceee-ecCCCccchhccccccC--CCCCCcccccCCCC
Q 015426 91 STEQPSCPVCLERLDQDTSGILT-TICNHSFHCSCISKWTD--SSCPVCRYCQQQPE 144 (407)
Q Consensus 91 ~~e~~~C~iCle~~~~~~~~~~~-~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~~~~ 144 (407)
+.+...||+|...+.+ |+. +.|+|.||..|+..|.. ..||.|+.......
T Consensus 18 ~~~~l~C~~C~~vl~~----p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRD----PVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAE 70 (391)
T ss_pred CcccccCccccccccC----CCCCCCCCCcccccccchhhccCcCCcccccccchhh
Confidence 5678999999999987 655 69999999999999975 69999988765433
No 60
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.01 E-value=0.011 Score=41.76 Aligned_cols=44 Identities=27% Similarity=0.609 Sum_probs=23.0
Q ss_pred ccccccccccCCCceeeecCCCccchhcccccc---CCCCCCccccc
Q 015426 97 CPVCLERLDQDTSGILTTICNHSFHCSCISKWT---DSSCPVCRYCQ 140 (407)
Q Consensus 97 C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~---~~~CP~Cr~~~ 140 (407)
||+|.+.++.+......-+|++-.|..|..... +..||.||...
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 899999998766666677888999999965543 48999999864
No 61
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.0091 Score=58.91 Aligned_cols=45 Identities=22% Similarity=0.634 Sum_probs=38.0
Q ss_pred CCCcccccccccccCCCceeeecCCCc-cchhcccccc--CCCCCCcccccC
Q 015426 93 EQPSCPVCLERLDQDTSGILTTICNHS-FHCSCISKWT--DSSCPVCRYCQQ 141 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~-F~~~Cl~~w~--~~~CP~Cr~~~~ 141 (407)
....|-||+....+ .+++||-|. .|..|.+... ...||+||+.+.
T Consensus 289 ~gkeCVIClse~rd----t~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 289 SGKECVICLSESRD----TVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred CCCeeEEEecCCcc----eEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 46789999999887 789999998 7899987764 578999999875
No 62
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.86 E-value=0.0058 Score=66.55 Aligned_cols=48 Identities=35% Similarity=0.805 Sum_probs=36.3
Q ss_pred CCCccccccccccc-CCCce--eeecCCCccchhcccccc----CCCCCCccccc
Q 015426 93 EQPSCPVCLERLDQ-DTSGI--LTTICNHSFHCSCISKWT----DSSCPVCRYCQ 140 (407)
Q Consensus 93 e~~~C~iCle~~~~-~~~~~--~~~~C~H~F~~~Cl~~w~----~~~CP~Cr~~~ 140 (407)
....|+||...++. +.+-| .-..|.|-||..|+-+|- .+.||+||-.+
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRsei 1522 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccc
Confidence 56789999988872 22222 235799999999999994 38899999755
No 63
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.02 Score=54.52 Aligned_cols=47 Identities=28% Similarity=0.548 Sum_probs=35.7
Q ss_pred CCCCCcccccccccccCCCceee-ecCCCccchhccccccC----CCCCCcccccC
Q 015426 91 STEQPSCPVCLERLDQDTSGILT-TICNHSFHCSCISKWTD----SSCPVCRYCQQ 141 (407)
Q Consensus 91 ~~e~~~C~iCle~~~~~~~~~~~-~~C~H~F~~~Cl~~w~~----~~CP~Cr~~~~ 141 (407)
.+...+||+|-+.-.. |.+ .+|+|.||..|+..-.. ..||.|.....
T Consensus 236 ~t~~~~C~~Cg~~Pti----P~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTI----PHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCC----CeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 3577899999988554 554 45999999999987432 68999987543
No 64
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.0077 Score=48.90 Aligned_cols=48 Identities=31% Similarity=0.762 Sum_probs=34.0
Q ss_pred CCCCccccccccccc-------C---CC---ceeeecCCCccchhccccccC--CCCCCcccc
Q 015426 92 TEQPSCPVCLERLDQ-------D---TS---GILTTICNHSFHCSCISKWTD--SSCPVCRYC 139 (407)
Q Consensus 92 ~e~~~C~iCle~~~~-------~---~~---~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~ 139 (407)
.+..+|+||..-+-+ . .+ .+.--.|+|.||.-||.+|.. ..||+|.+.
T Consensus 44 i~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 44 IVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred eeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 477899998754421 0 01 112347999999999999975 899999764
No 65
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=1.1 Score=43.67 Aligned_cols=47 Identities=28% Similarity=0.580 Sum_probs=39.5
Q ss_pred CCcccccccccccC--CCceeeecCCCccchhccccccC---CCCCCccccc
Q 015426 94 QPSCPVCLERLDQD--TSGILTTICNHSFHCSCISKWTD---SSCPVCRYCQ 140 (407)
Q Consensus 94 ~~~C~iCle~~~~~--~~~~~~~~C~H~F~~~Cl~~w~~---~~CP~Cr~~~ 140 (407)
.|.|-||-+.|... ...|..+.|||+||..|+.+... ..||.||...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 58899999999754 44678999999999999988754 6789999974
No 66
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=94.56 E-value=0.015 Score=42.68 Aligned_cols=40 Identities=28% Similarity=0.696 Sum_probs=27.5
Q ss_pred CCCCcccccccccccCCCcee-eecCCCccchhccccccC----CCCCC
Q 015426 92 TEQPSCPVCLERLDQDTSGIL-TTICNHSFHCSCISKWTD----SSCPV 135 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~-~~~C~H~F~~~Cl~~w~~----~~CP~ 135 (407)
.-...|||.+..|.+ |+ ...|+|+|....|..|.. ..||+
T Consensus 9 ~~~~~CPiT~~~~~~----PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFED----PVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SS----EEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhC----CcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 356899999999997 75 469999999999999872 56887
No 67
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.50 E-value=3.8 Score=38.91 Aligned_cols=63 Identities=17% Similarity=0.183 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 015426 294 AIAQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREKMALRAKDDKIQDSE 356 (407)
Q Consensus 294 ~~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Le 356 (407)
++...++.++.+...++.++..+.+.-..+.+++..++.++..++..+.......+..+..+.
T Consensus 93 aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~ 155 (239)
T COG1579 93 ALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIR 155 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666655555566666666665555555554444433333333333
No 68
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=94.24 E-value=0.014 Score=58.03 Aligned_cols=43 Identities=30% Similarity=0.821 Sum_probs=36.6
Q ss_pred CcccccccccccCCCceeeecCCCccchhccccccC----CCCCCcccccC
Q 015426 95 PSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD----SSCPVCRYCQQ 141 (407)
Q Consensus 95 ~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~----~~CP~Cr~~~~ 141 (407)
.-|-||-|-=.+ +..-||||..|..|+..|.+ ..||.||..+.
T Consensus 370 eLCKICaendKd----vkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 370 ELCKICAENDKD----VKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred HHHHHhhccCCC----cccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 359999887655 77889999999999999973 78999998875
No 69
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.12 E-value=0.013 Score=58.33 Aligned_cols=48 Identities=27% Similarity=0.644 Sum_probs=38.6
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhccccc----cCCCCCCccccc
Q 015426 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKW----TDSSCPVCRYCQ 140 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w----~~~~CP~Cr~~~ 140 (407)
-.+.|..|-+.+..-....-.+||.|.||..|+... ...+||.||...
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crklr 415 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLR 415 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 357899999999765555678999999999999854 458999999543
No 70
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.04 E-value=0.011 Score=53.47 Aligned_cols=41 Identities=27% Similarity=0.583 Sum_probs=30.6
Q ss_pred CCcccccccccccCCCceeeecCCCccchhcccccc--CCCCCCccc
Q 015426 94 QPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWT--DSSCPVCRY 138 (407)
Q Consensus 94 ~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~--~~~CP~Cr~ 138 (407)
...|.||-..|.. |+++.|||.||..|...-- ...|-+|-.
T Consensus 196 PF~C~iCKkdy~s----pvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk 238 (259)
T COG5152 196 PFLCGICKKDYES----PVVTECGHSFCSLCAIRKYQKGDECGVCGK 238 (259)
T ss_pred ceeehhchhhccc----hhhhhcchhHHHHHHHHHhccCCcceecch
Confidence 3479999999998 9999999999999965421 144444443
No 71
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=93.90 E-value=7.1 Score=38.59 Aligned_cols=76 Identities=20% Similarity=0.165 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HHHHHhhhHHHHHHHHHHHHHHHHhHhH
Q 015426 297 QKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEERE-------KMALRAKDDKIQDSEAQLRDLMAYLEAE 369 (407)
Q Consensus 297 ~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~-------~~~~~~~~~~i~~Leeq~~dLm~~l~~~ 369 (407)
++.+.++.+++.+..+.....+-+..|........+-...+.++. .+-++..+..|..|+..|+|||--+.+=
T Consensus 141 EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnL 220 (401)
T PF06785_consen 141 EENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNL 220 (401)
T ss_pred HHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555543333333333222222222222333222 3346677889999999999999887664
Q ss_pred HHH
Q 015426 370 KTL 372 (407)
Q Consensus 370 ~~~ 372 (407)
=.+
T Consensus 221 LQl 223 (401)
T PF06785_consen 221 LQL 223 (401)
T ss_pred HHh
Confidence 444
No 72
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=93.88 E-value=2.3 Score=44.50 Aligned_cols=93 Identities=15% Similarity=0.239 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 015426 268 QKIYYETLLQEAKEETEKIISEAVKKAIAQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREKMALRA 347 (407)
Q Consensus 268 qr~~~E~~l~~l~~~~~~~l~~~~~~~~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~~~~~ 347 (407)
-+.||+.+|.+|..+. ..+...........+.|..+++..+++++.+.+- .+....++..+++++....+-
T Consensus 414 Ik~~Y~~RI~eLt~ql--Q~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~ee-------L~~a~~~i~~LqDEL~TTr~N 484 (518)
T PF10212_consen 414 IKSYYMSRIEELTSQL--QHADSKAVHFYAECRALQKRLESAEKEKESLEEE-------LKEANQNISRLQDELETTRRN 484 (518)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhh
Confidence 4678999999998775 3333333445567888888888777776654333 334445666677777777777
Q ss_pred hhHHHHHHHHHHHHHHHHhHhH
Q 015426 348 KDDKIQDSEAQLRDLMAYLEAE 369 (407)
Q Consensus 348 ~~~~i~~Leeq~~dLm~~l~~~ 369 (407)
.+.+|..|.|++..|---|..|
T Consensus 485 YE~QLs~MSEHLasmNeqL~~Q 506 (518)
T PF10212_consen 485 YEEQLSMMSEHLASMNEQLAKQ 506 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777766555544
No 73
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.86 E-value=5.1 Score=44.26 Aligned_cols=32 Identities=28% Similarity=0.352 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhH
Q 015426 338 EEREKMALRAKDDKIQDSEAQLRDLMAYLEAE 369 (407)
Q Consensus 338 ~~~~~~~~~~~~~~i~~Leeq~~dLm~~l~~~ 369 (407)
|.++++.++....+++.|...+..+..-++.|
T Consensus 634 Er~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q 665 (717)
T PF10168_consen 634 EREFKKELERMKDQLQDLKASIEQLKKKLDYQ 665 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555655555555554443
No 74
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=93.71 E-value=0.027 Score=54.38 Aligned_cols=46 Identities=26% Similarity=0.632 Sum_probs=39.0
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhcccccc--CCCCCCccc
Q 015426 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWT--DSSCPVCRY 138 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~--~~~CP~Cr~ 138 (407)
....||||.+.+..+...+..++|+|..|..|+.... ...||+|..
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 3455999999998777778899999999999987763 389999988
No 75
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=93.61 E-value=0.01 Score=57.90 Aligned_cols=48 Identities=31% Similarity=0.608 Sum_probs=38.6
Q ss_pred CCCCCcccccccccccCCCceeeecCCCccchhccccccC--CCCCCcccccC
Q 015426 91 STEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 91 ~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
.....+|.+|--+|-++. .++-|.|+||.+||-.... ..||.|...+.
T Consensus 12 ~n~~itC~LC~GYliDAT---TI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih 61 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDAT---TITECLHTFCKSCIVKYLEESKYCPTCDIVIH 61 (331)
T ss_pred cccceehhhccceeecch---hHHHHHHHHHHHHHHHHHHHhccCCccceecc
Confidence 346789999999998632 3567999999999988653 89999998664
No 76
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=93.37 E-value=0.013 Score=56.34 Aligned_cols=35 Identities=23% Similarity=0.721 Sum_probs=28.0
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhccccc
Q 015426 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKW 128 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w 128 (407)
....|.|||--|.++. ....+.|.|.||..|+.+.
T Consensus 114 p~gqCvICLygfa~~~-~ft~T~C~Hy~H~~ClaRy 148 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSP-AFTVTACDHYMHFACLARY 148 (368)
T ss_pred CCCceEEEEEeecCCC-ceeeehhHHHHHHHHHHHH
Confidence 4567999999998532 3568899999999998664
No 77
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=93.20 E-value=0.023 Score=48.72 Aligned_cols=35 Identities=23% Similarity=0.757 Sum_probs=29.9
Q ss_pred CCcccccccccccCCCceeeecCC------Cccchhcccccc
Q 015426 94 QPSCPVCLERLDQDTSGILTTICN------HSFHCSCISKWT 129 (407)
Q Consensus 94 ~~~C~iCle~~~~~~~~~~~~~C~------H~F~~~Cl~~w~ 129 (407)
...|.||++.+.. ..|++.++|+ |.||.+|+.+|.
T Consensus 26 ~~EC~IC~~~I~~-~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDN-NDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred Ceeehhhhhhhhc-CCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 5689999999996 6678888887 669999999993
No 78
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.06 E-value=0.12 Score=49.83 Aligned_cols=51 Identities=20% Similarity=0.374 Sum_probs=41.1
Q ss_pred CCCCCcccccccccccCCCceeeecCCCccchhcccccc-CCCCCCcccccC
Q 015426 91 STEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWT-DSSCPVCRYCQQ 141 (407)
Q Consensus 91 ~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~-~~~CP~Cr~~~~ 141 (407)
......|||....|.....-..+.+|||.|...++.... ...||+|-..|.
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELKKSKKCPVCGKPFT 161 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhcccccccccCCccc
Confidence 346679999999996434344577999999999999887 578999998876
No 79
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.90 E-value=0.036 Score=54.22 Aligned_cols=50 Identities=24% Similarity=0.620 Sum_probs=40.8
Q ss_pred CCCCcccccccccccCCCceeeecCCCccchhccccc---cCCCCCCcccccC
Q 015426 92 TEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKW---TDSSCPVCRYCQQ 141 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w---~~~~CP~Cr~~~~ 141 (407)
.|...||.|.|.++.+.......+||.-.|.-|.... +...||.||....
T Consensus 12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence 3666799999999988877888999998888886554 3489999998764
No 80
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=92.88 E-value=11 Score=38.92 Aligned_cols=66 Identities=18% Similarity=0.248 Sum_probs=36.3
Q ss_pred CccchhccccccCCCCCCcccccCCCCccceeecccCCCccc-ccccCccccccCCcccccccccc-CCceeEe--ecCc
Q 015426 118 HSFHCSCISKWTDSSCPVCRYCQQQPEKSICFVCQTSENLWM-CVICGFVGCGRYKGGHAIIHWKE-TEHCYSL--ELET 193 (407)
Q Consensus 118 H~F~~~Cl~~w~~~~CP~Cr~~~~~~~~~~C~~C~~~~~l~~-Cl~Cg~~~Cgr~~~~Ha~~H~~~-t~H~~~~--~l~~ 193 (407)
..||..| .|++|.. |. +...+-.|+ |-+||++ ++-..|.+|+.- +|....- ....
T Consensus 123 ~gFC~~C-------~C~iC~k-fD---------~~~n~~~Wi~Cd~CgH~----cH~dCALr~~~i~~G~s~~g~~g~~d 181 (446)
T PF07227_consen 123 PGFCRRC-------MCCICSK-FD---------DNKNTCSWIGCDVCGHW----CHLDCALRHELIGTGPSVKGSIGTLD 181 (446)
T ss_pred CCccccC-------CccccCC-cc---------cCCCCeeEEeccCCCce----ehhhhhcccccccCCccCCCCCccCc
Confidence 4799998 7999976 43 233445676 7666655 223334444431 2211111 1124
Q ss_pred eeEEeccCCcc
Q 015426 194 QRVWDYAGDNY 204 (407)
Q Consensus 194 ~~v~cy~cd~~ 204 (407)
..++|..|+.-
T Consensus 182 ~~f~C~~C~~~ 192 (446)
T PF07227_consen 182 MQFHCRACGKT 192 (446)
T ss_pred eEEEccCCCCh
Confidence 67888888654
No 81
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.84 E-value=5.4 Score=33.88 Aligned_cols=42 Identities=19% Similarity=0.398 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHhHhH
Q 015426 328 EMWKAKISEIEEREKMALRA---KDDKIQDSEAQLRDLMAYLEAE 369 (407)
Q Consensus 328 ~~l~~kl~~~~~~~~~~~~~---~~~~i~~Leeq~~dLm~~l~~~ 369 (407)
..++.+++++..+....+.. |.+++.+|+.-|.||..-...|
T Consensus 71 ~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Q 115 (120)
T PF12325_consen 71 EELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQ 115 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666555554443 5677788888888876655443
No 82
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=92.82 E-value=0.1 Score=39.01 Aligned_cols=56 Identities=18% Similarity=0.417 Sum_probs=45.8
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015426 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..+ ..|..+++++......+-.+++.|.+.+.|......++|..|.
T Consensus 10 ~~~~~l~~~f~~~-g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~ 65 (70)
T PF14259_consen 10 TTEEDLRNFFSRF-GPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEID 65 (70)
T ss_dssp --HHHHHHHCTTS-SBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCHHHHHHHHHhc-CCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEEC
Confidence 4778999999998 4699999999643445778999999999999999999877653
No 83
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.77 E-value=0.012 Score=42.24 Aligned_cols=43 Identities=23% Similarity=0.587 Sum_probs=32.5
Q ss_pred CcccccccccccCCCceeeecCCCc-cchhcccc-c--cCCCCCCcccccC
Q 015426 95 PSCPVCLERLDQDTSGILTTICNHS-FHCSCISK-W--TDSSCPVCRYCQQ 141 (407)
Q Consensus 95 ~~C~iCle~~~~~~~~~~~~~C~H~-F~~~Cl~~-w--~~~~CP~Cr~~~~ 141 (407)
..|.||.|---+ .++-.|||. .|..|..+ | ....||+||.++.
T Consensus 8 dECTICye~pvd----sVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVD----SVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcch----HHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 789999987554 356789998 68888654 3 2488999998753
No 84
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=92.76 E-value=1.4 Score=46.64 Aligned_cols=76 Identities=20% Similarity=0.261 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----HhHhHHHHhh
Q 015426 299 LQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDLMA----YLEAEKTLQQ 374 (407)
Q Consensus 299 l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dLm~----~l~~~~~~~~ 374 (407)
+..+...+..+...+..++..|..|.+.++.|.-++.+-.......+..++..|..|.++...||. .++.+..++.
T Consensus 298 l~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~ 377 (546)
T KOG0977|consen 298 LRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDA 377 (546)
T ss_pred HHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHh
Confidence 333334444444445555666777777777777777777777777788888888888777766554 4455555554
No 85
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.65 E-value=0.071 Score=49.35 Aligned_cols=50 Identities=26% Similarity=0.619 Sum_probs=40.6
Q ss_pred CCCCCcccccccccccCCCceeeecCCCccchhccccccC----------CCCCCcccccCC
Q 015426 91 STEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD----------SSCPVCRYCQQQ 142 (407)
Q Consensus 91 ~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~----------~~CP~Cr~~~~~ 142 (407)
....+.|..|---+.+.. .+.+.|-|.||..|++.|.. ..||.|...+-+
T Consensus 47 sDY~pNC~LC~t~La~gd--t~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 47 SDYNPNCRLCNTPLASGD--TTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred cCCCCCCceeCCccccCc--ceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 347899999998887644 56789999999999999942 679999887653
No 86
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.65 E-value=0.05 Score=53.84 Aligned_cols=43 Identities=28% Similarity=0.594 Sum_probs=33.6
Q ss_pred CCCCcccccccccccCCCceeeecCCCccchhccccccC-CCCCCccccc
Q 015426 92 TEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD-SSCPVCRYCQ 140 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~-~~CP~Cr~~~ 140 (407)
...+.|.||++...+ .+-+||||.-| |..-... ..||+||...
T Consensus 303 ~~p~lcVVcl~e~~~----~~fvpcGh~cc--ct~cs~~l~~CPvCR~rI 346 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKS----AVFVPCGHVCC--CTLCSKHLPQCPVCRQRI 346 (355)
T ss_pred CCCCceEEecCCccc----eeeecCCcEEE--chHHHhhCCCCchhHHHH
Confidence 356789999999887 77899999966 6544433 6699999865
No 87
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=92.61 E-value=9.7 Score=46.28 Aligned_cols=111 Identities=27% Similarity=0.321 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015426 262 AAQLENQKIYYETLLQEAKEETEKIIS---E--AVKKAIAQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISE 336 (407)
Q Consensus 262 ~~qle~qr~~~E~~l~~l~~~~~~~l~---~--~~~~~~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~ 336 (407)
.+.|+.+..-|+..+.+.+...+.... . ...+..+..+..+...++.+.+.+..++..|+.|...+..+..++.+
T Consensus 1430 ~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e 1509 (1930)
T KOG0161|consen 1430 VAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDE 1509 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666677777776655533221 1 11233456677777788877778888888899998888888888887
Q ss_pred HHHHH---HHHHHhhhHHHHHHHHHHHHHHHHhHhHHHH
Q 015426 337 IEERE---KMALRAKDDKIQDSEAQLRDLMAYLEAEKTL 372 (407)
Q Consensus 337 ~~~~~---~~~~~~~~~~i~~Leeq~~dLm~~l~~~~~~ 372 (407)
+.... +...+..+.++.+|+.++.++..-+++.+-.
T Consensus 1510 ~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~ 1548 (1930)
T KOG0161|consen 1510 GGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDK 1548 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 77644 5567777788888998888888877665544
No 88
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=92.38 E-value=0.084 Score=43.21 Aligned_cols=34 Identities=38% Similarity=0.725 Sum_probs=27.9
Q ss_pred CCCCcccccccccccCCCceeeecCCCccchhcccc
Q 015426 92 TEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISK 127 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~ 127 (407)
.+...|++|-..+.. +.....||+|.||..|+.+
T Consensus 76 ~~~~~C~vC~k~l~~--~~f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN--SVFVVFPCGHVVHYSCIKR 109 (109)
T ss_pred CCCCCccCcCCcCCC--ceEEEeCCCeEEecccccC
Confidence 356779999999986 3367899999999999753
No 89
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.25 E-value=0.056 Score=52.09 Aligned_cols=42 Identities=26% Similarity=0.468 Sum_probs=33.5
Q ss_pred CcccccccccccCCCceeeecCCCccchhccccccC--CCCCCccccc
Q 015426 95 PSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD--SSCPVCRYCQ 140 (407)
Q Consensus 95 ~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~ 140 (407)
..|-||-..|.. |+++.|+|.||..|-..-.. ..|++|....
T Consensus 242 f~c~icr~~f~~----pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 242 FKCFICRKYFYR----PVVTKCGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred cccccccccccc----chhhcCCceeehhhhccccccCCcceeccccc
Confidence 459999999998 89999999999999655332 6777776543
No 90
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=92.06 E-value=4.5 Score=31.15 Aligned_cols=48 Identities=15% Similarity=0.340 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015426 295 IAQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREK 342 (407)
Q Consensus 295 ~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~ 342 (407)
+..++..|..+-..+..+...|++-|..|...+..|..++..+-.++.
T Consensus 23 Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 23 LQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344555566666666667777788888888888888888777765543
No 91
>PRK09039 hypothetical protein; Validated
Probab=91.67 E-value=8.4 Score=38.72 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHH
Q 015426 326 NQEMWKAKISEIEEREKM---ALRAKDDKIQDSEAQLRDLM 363 (407)
Q Consensus 326 ~~~~l~~kl~~~~~~~~~---~~~~~~~~i~~Leeq~~dLm 363 (407)
.++.|+.++..++..+.. ..+..+.+|.+|+..+...+
T Consensus 145 qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 145 QIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555544444322 22333344444444444433
No 92
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.47 E-value=10 Score=42.18 Aligned_cols=30 Identities=17% Similarity=0.305 Sum_probs=17.4
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHhHHHHH
Q 015426 302 MQAKLDRCV---REKKFLDDLNENLLKNQEMWK 331 (407)
Q Consensus 302 l~~~l~~~~---~e~~~l~eln~~l~~~~~~l~ 331 (407)
|..++..++ .++.+++++++.|.++...+.
T Consensus 460 lEekVklLeetv~dlEalee~~EQL~Esn~ele 492 (1243)
T KOG0971|consen 460 LEEKVKLLEETVGDLEALEEMNEQLQESNRELE 492 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444 345667788888877654443
No 93
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=91.12 E-value=9.6 Score=39.43 Aligned_cols=12 Identities=8% Similarity=0.498 Sum_probs=6.8
Q ss_pred CCccchhccccc
Q 015426 117 NHSFHCSCISKW 128 (407)
Q Consensus 117 ~H~F~~~Cl~~w 128 (407)
.-.|...|....
T Consensus 102 dk~yqq~c~~~I 113 (622)
T COG5185 102 DKNYQQACQEEI 113 (622)
T ss_pred cchHHHHHHHHH
Confidence 345666775543
No 94
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=90.71 E-value=18 Score=41.26 Aligned_cols=69 Identities=23% Similarity=0.325 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHH
Q 015426 294 AIAQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREKMA---LRAKDDKIQDSEAQLRDL 362 (407)
Q Consensus 294 ~~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~~---~~~~~~~i~~Leeq~~dL 362 (407)
.+..++.++.++++.+..+...++++...|....+.+++.+...+++.... +......|+...+++++|
T Consensus 391 ~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~l 462 (1074)
T KOG0250|consen 391 ELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDL 462 (1074)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777888888888888888999999988888888888777665332 223334555555555543
No 95
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=90.69 E-value=0.059 Score=55.63 Aligned_cols=46 Identities=24% Similarity=0.731 Sum_probs=37.7
Q ss_pred CCCCcccccccccccCCCceeeecCCCccchhcccccc-------CCCCCCcccccC
Q 015426 92 TEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWT-------DSSCPVCRYCQQ 141 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~-------~~~CP~Cr~~~~ 141 (407)
.+...|.+|.+.-.+ ++...|.|.||.-|+..+. ...||+|-...+
T Consensus 534 k~~~~C~lc~d~aed----~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 534 KGEVECGLCHDPAED----YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred cCceeecccCChhhh----hHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 467789999999887 8899999999999997652 267888877654
No 96
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=90.55 E-value=28 Score=37.43 Aligned_cols=31 Identities=16% Similarity=0.182 Sum_probs=16.8
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHhHhHHHHhh
Q 015426 344 ALRAKDDKIQDSEAQLRDLMAYLEAEKTLQQ 374 (407)
Q Consensus 344 ~~~~~~~~i~~Leeq~~dLm~~l~~~~~~~~ 374 (407)
.+.....+|..|++.+.+....+....++++
T Consensus 379 ~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~ 409 (582)
T PF09731_consen 379 KLAELNSRLKALEEALDARSEAEDENRRAQQ 409 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445566666666555555555544444
No 97
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=90.44 E-value=0.2 Score=36.26 Aligned_cols=31 Identities=19% Similarity=0.357 Sum_probs=27.1
Q ss_pred eeeecCCCccchhccccccCCCCCCcccccC
Q 015426 111 ILTTICNHSFHCSCISKWTDSSCPVCRYCQQ 141 (407)
Q Consensus 111 ~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~ 141 (407)
..+++|+|.-|..|..-+.-+.||.|-..+.
T Consensus 20 ~~~~pCgH~I~~~~f~~~rYngCPfC~~~~~ 50 (55)
T PF14447_consen 20 GTVLPCGHLICDNCFPGERYNGCPFCGTPFE 50 (55)
T ss_pred cccccccceeeccccChhhccCCCCCCCccc
Confidence 5688999999999988777799999988775
No 98
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=90.42 E-value=11 Score=32.43 Aligned_cols=47 Identities=19% Similarity=0.338 Sum_probs=33.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHh
Q 015426 318 DLNENLLKNQEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDLMAYLEA 368 (407)
Q Consensus 318 eln~~l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dLm~~l~~ 368 (407)
.....|......|..+...++.++ .....+|.+|..|.+-|...|+.
T Consensus 84 ~a~~~l~~~e~sw~~qk~~le~e~----~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 84 SAKAELEESEASWEEQKEQLEKEL----SELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhh
Confidence 355566666777877777766554 44556888999999998887764
No 99
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=90.33 E-value=0.081 Score=51.26 Aligned_cols=51 Identities=27% Similarity=0.503 Sum_probs=36.9
Q ss_pred eeecCCCccchhccccccCCCCCCcccccCCCCccceeecccCCCcccccccCcccccc
Q 015426 112 LTTICNHSFHCSCISKWTDSSCPVCRYCQQQPEKSICFVCQTSENLWMCVICGFVGCGR 170 (407)
Q Consensus 112 ~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~~~~~~~C~~C~~~~~l~~Cl~Cg~~~Cgr 170 (407)
+.++|.|.||.+|-..-.+..||.|--.++ +-..| +-+.+++|- +..||-|
T Consensus 105 RmIPCkHvFCl~CAr~~~dK~Cp~C~d~Vq-----rIeq~-~~g~iFmC~--~~~GC~R 155 (389)
T KOG2932|consen 105 RMIPCKHVFCLECARSDSDKICPLCDDRVQ-----RIEQI-MMGGIFMCA--APHGCLR 155 (389)
T ss_pred cccccchhhhhhhhhcCccccCcCcccHHH-----HHHHh-cccceEEee--cchhHHH
Confidence 478999999999987666789999976654 22233 445677776 6667865
No 100
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.02 E-value=0.11 Score=49.96 Aligned_cols=42 Identities=21% Similarity=0.630 Sum_probs=33.1
Q ss_pred CCCcccccccccccCCCceeeecCCCc-cchhccccccCCCCCCccccc
Q 015426 93 EQPSCPVCLERLDQDTSGILTTICNHS-FHCSCISKWTDSSCPVCRYCQ 140 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~-F~~~Cl~~w~~~~CP~Cr~~~ 140 (407)
...-|.||++.-.+ -+.|+|||. -|..|.... ..||+||+.+
T Consensus 299 ~~~LC~ICmDaP~D----CvfLeCGHmVtCt~CGkrm--~eCPICRqyi 341 (350)
T KOG4275|consen 299 TRRLCAICMDAPRD----CVFLECGHMVTCTKCGKRM--NECPICRQYI 341 (350)
T ss_pred HHHHHHHHhcCCcc----eEEeecCcEEeehhhcccc--ccCchHHHHH
Confidence 35679999998766 789999997 577786654 4899999754
No 101
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=89.85 E-value=0.55 Score=34.41 Aligned_cols=56 Identities=20% Similarity=0.449 Sum_probs=45.9
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015426 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++.. ...|..+++.++.....+-...+.|.+.++|+.....++|..|+
T Consensus 10 ~t~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~ 65 (70)
T PF00076_consen 10 VTEEELRDFFSQ-FGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKIN 65 (70)
T ss_dssp SSHHHHHHHHHT-TSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCHHHHHHHHHH-hhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEEC
Confidence 467888889888 44568899999644455667899999999999999999998764
No 102
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=89.72 E-value=0.67 Score=33.57 Aligned_cols=56 Identities=21% Similarity=0.465 Sum_probs=45.5
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015426 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
++..|+.+|+..+ ..|..+.+.+......+-.+.+.|.+.++|.......++..|+
T Consensus 11 ~~~~~i~~~~~~~-g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~ 66 (74)
T cd00590 11 VTEEDLRELFSKF-GKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELG 66 (74)
T ss_pred cCHHHHHHHHHhc-CCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 4677888999887 6788888888543334568999999999999999999998765
No 103
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=89.44 E-value=27 Score=35.75 Aligned_cols=21 Identities=29% Similarity=0.192 Sum_probs=13.1
Q ss_pred HHHHHHHH--HHHHHHHHHHHHH
Q 015426 255 NEYNELLA--AQLENQKIYYETL 275 (407)
Q Consensus 255 ~ey~~lL~--~qle~qr~~~E~~ 275 (407)
.||..|.. ..||+|+.--|..
T Consensus 250 qEnlqLvhR~h~LEEq~reqElr 272 (502)
T KOG0982|consen 250 QENLQLVHRYHMLEEQRREQELR 272 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Confidence 36766666 6677777665533
No 104
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=89.38 E-value=41 Score=37.74 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHH
Q 015426 350 DKIQDSEAQLRDLMAYLEAEKTL 372 (407)
Q Consensus 350 ~~i~~Leeq~~dLm~~l~~~~~~ 372 (407)
++|..|+|.|.||-..=+..+.+
T Consensus 462 ekVklLeetv~dlEalee~~EQL 484 (1243)
T KOG0971|consen 462 EKVKLLEETVGDLEALEEMNEQL 484 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555544443333333
No 105
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.35 E-value=0.07 Score=56.27 Aligned_cols=47 Identities=19% Similarity=0.433 Sum_probs=39.9
Q ss_pred CCCCCcccccccccccCCCceeeecCCCccchhccccccCCCCCCccc
Q 015426 91 STEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRY 138 (407)
Q Consensus 91 ~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~ 138 (407)
..+.+.|+||+.+|-...--|+.+.|+|+-|..|+......+|| |.+
T Consensus 8 w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~scp-~~~ 54 (861)
T KOG3161|consen 8 WVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNASCP-TKR 54 (861)
T ss_pred hHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhccCC-CCc
Confidence 35789999999888765556899999999999999988888999 654
No 106
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=89.06 E-value=0.14 Score=45.06 Aligned_cols=14 Identities=36% Similarity=1.039 Sum_probs=11.4
Q ss_pred CCCccccccccccc
Q 015426 93 EQPSCPVCLERLDQ 106 (407)
Q Consensus 93 e~~~C~iCle~~~~ 106 (407)
|..+||||+|.--.
T Consensus 1 ed~~CpICme~PHN 14 (162)
T PF07800_consen 1 EDVTCPICMEHPHN 14 (162)
T ss_pred CCccCceeccCCCc
Confidence 46799999998665
No 107
>PRK09039 hypothetical protein; Validated
Probab=88.90 E-value=27 Score=35.04 Aligned_cols=50 Identities=18% Similarity=0.229 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 015426 298 KLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREKMALRA 347 (407)
Q Consensus 298 ~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~~~~~ 347 (407)
++..|+++++.++.++..++..-..+.+.....+.+++.+..++..++..
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544444444444455556666666666555544
No 108
>PRK12704 phosphodiesterase; Provisional
Probab=88.71 E-value=35 Score=36.33 Aligned_cols=6 Identities=33% Similarity=0.567 Sum_probs=2.4
Q ss_pred CCCcEE
Q 015426 381 IKDGTV 386 (407)
Q Consensus 381 i~~G~v 386 (407)
+.+-+|
T Consensus 206 ~~e~~~ 211 (520)
T PRK12704 206 VAETTV 211 (520)
T ss_pred hhhhce
Confidence 334444
No 109
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=88.39 E-value=11 Score=31.17 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHhHh
Q 015426 351 KIQDSEAQLRDLMAYLEA 368 (407)
Q Consensus 351 ~i~~Leeq~~dLm~~l~~ 368 (407)
.|.+|+.+|.|+...++.
T Consensus 59 r~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 59 RIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 110
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.39 E-value=22 Score=37.78 Aligned_cols=14 Identities=7% Similarity=0.114 Sum_probs=8.2
Q ss_pred hhcCCcccccCCCc
Q 015426 49 QHFNGRQFNSLEEE 62 (407)
Q Consensus 49 ~~~~g~~f~~l~~~ 62 (407)
..++|.++..++|.
T Consensus 12 ~r~t~~p~~~i~P~ 25 (581)
T KOG0995|consen 12 KRGTGTPSGGINPT 25 (581)
T ss_pred cccccCCCCCCCCC
Confidence 44566666666654
No 111
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.23 E-value=38 Score=35.88 Aligned_cols=114 Identities=19% Similarity=0.091 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 015426 256 EYNELLAAQLENQKIYYETLLQEAKEETEKIISEAVKKAIAQKLQ---KMQAKLDRCVREKKFLDDLNENLLKNQEMWKA 332 (407)
Q Consensus 256 ey~~lL~~qle~qr~~~E~~l~~l~~~~~~~l~~~~~~~~~~~l~---~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~ 332 (407)
|..++|....+--|+-|-..-..++.+. +.-...+.....++++ .++++.+.+++-..+|.+--+....+++.+.+
T Consensus 559 E~~~lL~~a~~vfrEqYi~~~dlV~~e~-qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~ 637 (741)
T KOG4460|consen 559 ECLQLLSRATQVFREQYILKQDLVKEEI-QRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMN 637 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 5555666666555554544444443333 1112222222232333 33333333333333444444444455666666
Q ss_pred HHHHHHHHH-------HHHHHhhhHHHHHHHHHHHHHHHHhHhHH
Q 015426 333 KISEIEERE-------KMALRAKDDKIQDSEAQLRDLMAYLEAEK 370 (407)
Q Consensus 333 kl~~~~~~~-------~~~~~~~~~~i~~Leeq~~dLm~~l~~~~ 370 (407)
+++.+.... ..+-+...+++.-+..+++.|-.-|++-.
T Consensus 638 ~~~~L~~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~ 682 (741)
T KOG4460|consen 638 RMKKLLHSFHSELPVLSDAERDFKKELQLIPDQLRHLGNAIETVT 682 (741)
T ss_pred HHHHHHhcccccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 666554321 11222233345566777777777777643
No 112
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=88.08 E-value=40 Score=35.93 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHHHHhHhH
Q 015426 348 KDDKIQDSEAQLRDLMAYLEAE 369 (407)
Q Consensus 348 ~~~~i~~Leeq~~dLm~~l~~~ 369 (407)
.+.++..|.+|+|.+--.+++.
T Consensus 281 ~~~e~e~LkeqLr~~qe~lqaS 302 (546)
T PF07888_consen 281 LQQENEALKEQLRSAQEQLQAS 302 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777776666644
No 113
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=88.07 E-value=0.18 Score=48.69 Aligned_cols=40 Identities=35% Similarity=0.757 Sum_probs=33.4
Q ss_pred CcccccccccccCCCcee-eecCCCccchhcccccc---CCCCCCccc
Q 015426 95 PSCPVCLERLDQDTSGIL-TTICNHSFHCSCISKWT---DSSCPVCRY 138 (407)
Q Consensus 95 ~~C~iCle~~~~~~~~~~-~~~C~H~F~~~Cl~~w~---~~~CP~Cr~ 138 (407)
+.||.|.-++.. |. +.-|+|.||..||...+ +..||.|..
T Consensus 275 LkCplc~~Llrn----p~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRN----PMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhC----cccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 889999999886 43 55799999999998764 488999965
No 114
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.05 E-value=0.18 Score=50.74 Aligned_cols=46 Identities=22% Similarity=0.420 Sum_probs=33.6
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhcccccc----------CCCCCCcccc
Q 015426 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWT----------DSSCPVCRYC 139 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~----------~~~CP~Cr~~ 139 (407)
-+..|.||.+... +..-..-+||+|.||..|+...- ...||-+...
T Consensus 183 slf~C~ICf~e~~-G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 183 SLFDCCICFEEQM-GQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred hcccceeeehhhc-CcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 3568999998865 22335689999999999987751 1568776544
No 115
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.98 E-value=25 Score=38.70 Aligned_cols=11 Identities=45% Similarity=0.492 Sum_probs=6.2
Q ss_pred HHHHHHHHHHH
Q 015426 261 LAAQLENQKIY 271 (407)
Q Consensus 261 L~~qle~qr~~ 271 (407)
|..|||.||++
T Consensus 373 lekqLerQRei 383 (1118)
T KOG1029|consen 373 LEKQLERQREI 383 (1118)
T ss_pred HHHHHHHHHHH
Confidence 45566666653
No 116
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=87.66 E-value=0.23 Score=54.14 Aligned_cols=42 Identities=33% Similarity=0.866 Sum_probs=34.4
Q ss_pred CcccccccccccCCCceeeecCCCccchhccccccC----CCCCCcccccC
Q 015426 95 PSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD----SSCPVCRYCQQ 141 (407)
Q Consensus 95 ~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~----~~CP~Cr~~~~ 141 (407)
..|++|++ .+. +..++|+|.||..|+..... ..||.||....
T Consensus 455 ~~c~ic~~-~~~----~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDS----FFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-ccc----ceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 79999999 554 78999999999999877532 56999987653
No 117
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=87.65 E-value=18 Score=31.55 Aligned_cols=10 Identities=20% Similarity=0.464 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 015426 329 MWKAKISEIE 338 (407)
Q Consensus 329 ~l~~kl~~~~ 338 (407)
.+...++..+
T Consensus 84 ~LEeele~ae 93 (143)
T PF12718_consen 84 LLEEELEEAE 93 (143)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 118
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=87.38 E-value=41 Score=35.30 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 015426 316 LDDLNENLLKNQEMWKAKISEIEEREKMALRAKDDKIQDSE 356 (407)
Q Consensus 316 l~eln~~l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Le 356 (407)
|..|-+-|.++.+.++.++++...+..+......++|..|.
T Consensus 138 l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~ 178 (475)
T PRK10361 138 LNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQ 178 (475)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666666666655444333333333444443
No 119
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=87.28 E-value=33 Score=37.87 Aligned_cols=62 Identities=18% Similarity=0.299 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHH---HHHHHHhhhHHHHHHHHHHHHHHHHh
Q 015426 305 KLDRCVREKKFLDDLNENLLKNQEM-------WKAKISEIEER---EKMALRAKDDKIQDSEAQLRDLMAYL 366 (407)
Q Consensus 305 ~l~~~~~e~~~l~eln~~l~~~~~~-------l~~kl~~~~~~---~~~~~~~~~~~i~~Leeq~~dLm~~l 366 (407)
..+.++..+.++++-|.-|..+... |=.-|.+...+ ....+..++++|.+|...|.+||.-+
T Consensus 588 ~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~ 659 (697)
T PF09726_consen 588 DTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVM 659 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444555556666555555543211 11122222222 23457778889999999888888753
No 120
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.14 E-value=0.36 Score=45.47 Aligned_cols=49 Identities=22% Similarity=0.314 Sum_probs=40.4
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhcccccc--CCCCCCcccccC
Q 015426 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWT--DSSCPVCRYCQQ 141 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~--~~~CP~Cr~~~~ 141 (407)
.--.||||.+.+.....-.++-+|+|.|+..|..+.- +..||+|-....
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plk 270 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLK 270 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCc
Confidence 4567999999999766555678999999999999874 588999987654
No 121
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=87.00 E-value=11 Score=38.78 Aligned_cols=43 Identities=12% Similarity=0.283 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHh
Q 015426 326 NQEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDLMAYLEA 368 (407)
Q Consensus 326 ~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dLm~~l~~ 368 (407)
+.+.++.++..+..++=.-.+.|++-+..|+-||+||-.|+.-
T Consensus 203 steelr~qVD~A~~q~VnP~k~KeQLV~QLkTQItDLErFInF 245 (621)
T KOG3759|consen 203 STEELRRQVDDALKQLVNPFKEKEQLVDQLKTQITDLERFINF 245 (621)
T ss_pred cHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888777777788888899999999999999875
No 122
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=86.93 E-value=0.27 Score=53.60 Aligned_cols=48 Identities=31% Similarity=0.793 Sum_probs=35.2
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhcccccc---------CCCCCCccccc
Q 015426 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWT---------DSSCPVCRYCQ 140 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~---------~~~CP~Cr~~~ 140 (407)
....|.||.+.+..+...-.-..|-|.||..||..|. .+.||.|....
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 5568999999998533111123477999999999994 27899999544
No 123
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=86.86 E-value=51 Score=40.44 Aligned_cols=75 Identities=24% Similarity=0.282 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHHHHhHhHHHH
Q 015426 298 KLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREKM---ALRAKDDKIQDSEAQLRDLMAYLEAEKTL 372 (407)
Q Consensus 298 ~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~---~~~~~~~~i~~Leeq~~dLm~~l~~~~~~ 372 (407)
+...+..+++.+.+++..+++.+..|.+..+.+.+++.++...+.. ......+.+..|+.++.||-..++.+++.
T Consensus 958 Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~ 1035 (1930)
T KOG0161|consen 958 EKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRI 1035 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666777777776666666666555544322 22233445666777777777777666555
No 124
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=86.69 E-value=31 Score=33.20 Aligned_cols=77 Identities=14% Similarity=0.214 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhHHHHhh
Q 015426 295 IAQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDLMAYLEAEKTLQQ 374 (407)
Q Consensus 295 ~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dLm~~l~~~~~~~~ 374 (407)
+.+++..|+.++.+..+|+.+|. .-.....-...-++..+...+......++.+..+|.+-.+-++..|+.+..-++
T Consensus 86 Lq~ql~~l~akI~k~~~el~~L~---TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l~~~~q~k~ 162 (258)
T PF15397_consen 86 LQQQLEQLDAKIQKTQEELNFLS---TYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELASLSRKIQEKK 162 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777777777777777643 222222222223455555555555555666777777777777777766554433
No 125
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=86.52 E-value=51 Score=36.96 Aligned_cols=23 Identities=30% Similarity=0.182 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 015426 260 LLAAQLENQKIYYETLLQEAKEE 282 (407)
Q Consensus 260 lL~~qle~qr~~~E~~l~~l~~~ 282 (407)
.|-..|+.+|..++.+..++.+.
T Consensus 520 ~li~~l~~~~~~~e~~~~~~~~~ 542 (782)
T PRK00409 520 ELIASLEELERELEQKAEEAEAL 542 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666677677666655443
No 126
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.44 E-value=0.34 Score=43.39 Aligned_cols=47 Identities=26% Similarity=0.591 Sum_probs=30.9
Q ss_pred CCCcccccccccccCCCce----eeecCCCccchhccccccC-------------CCCCCccccc
Q 015426 93 EQPSCPVCLERLDQDTSGI----LTTICNHSFHCSCISKWTD-------------SSCPVCRYCQ 140 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~----~~~~C~H~F~~~Cl~~w~~-------------~~CP~Cr~~~ 140 (407)
++..|.||.-.-- +.+.| -...|+..||.-|+..|+. ..||-|..++
T Consensus 164 ~~~~cgicyayql-dGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pi 227 (234)
T KOG3268|consen 164 ELGACGICYAYQL-DGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPI 227 (234)
T ss_pred hhhcccceeeeec-CCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcc
Confidence 4556667754422 12222 2579999999999999953 4588887654
No 127
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=86.40 E-value=49 Score=35.19 Aligned_cols=7 Identities=29% Similarity=0.506 Sum_probs=3.3
Q ss_pred CCCCcEE
Q 015426 380 EIKDGTV 386 (407)
Q Consensus 380 ei~~G~v 386 (407)
-+.+-+|
T Consensus 199 ~~~e~~~ 205 (514)
T TIGR03319 199 HVAETTV 205 (514)
T ss_pred hhhhhee
Confidence 3444454
No 128
>PRK10884 SH3 domain-containing protein; Provisional
Probab=86.23 E-value=15 Score=34.21 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015426 297 QKLQKMQAKLDRCVREKKFLDDLNENL 323 (407)
Q Consensus 297 ~~l~~l~~~l~~~~~e~~~l~eln~~l 323 (407)
++..++++++.........|++-|+.|
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L 144 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKL 144 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444333333333334444
No 129
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=86.19 E-value=27 Score=31.99 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=15.5
Q ss_pred HhhhHHHHHHHHHHHHHHHHhH
Q 015426 346 RAKDDKIQDSEAQLRDLMAYLE 367 (407)
Q Consensus 346 ~~~~~~i~~Leeq~~dLm~~l~ 367 (407)
+....+|..|..+.+.|..+|+
T Consensus 166 k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 166 KKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445677778888887777765
No 130
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.03 E-value=0.4 Score=52.44 Aligned_cols=43 Identities=28% Similarity=0.749 Sum_probs=34.2
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhccccccCCCCCCcccc
Q 015426 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYC 139 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~ 139 (407)
..-.|..|--.++. +.+.-.|+|+||..|+.. ....||.|+..
T Consensus 839 q~skCs~C~~~Ldl---P~VhF~CgHsyHqhC~e~-~~~~CP~C~~e 881 (933)
T KOG2114|consen 839 QVSKCSACEGTLDL---PFVHFLCGHSYHQHCLED-KEDKCPKCLPE 881 (933)
T ss_pred eeeeecccCCcccc---ceeeeecccHHHHHhhcc-CcccCCccchh
Confidence 45789999998886 135779999999999982 33689999873
No 131
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=85.61 E-value=0.3 Score=34.28 Aligned_cols=38 Identities=34% Similarity=0.950 Sum_probs=25.0
Q ss_pred ccccccccccCCCceeeecCCC-----ccchhccccccC----CCCCCc
Q 015426 97 CPVCLERLDQDTSGILTTICNH-----SFHCSCISKWTD----SSCPVC 136 (407)
Q Consensus 97 C~iCle~~~~~~~~~~~~~C~H-----~F~~~Cl~~w~~----~~CP~C 136 (407)
|-||++.-+++. ++..||.- ..|..|+..|.. ..|++|
T Consensus 1 CrIC~~~~~~~~--~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE--PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS---EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC--ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 668988866533 67778874 479999999953 678877
No 132
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=85.49 E-value=44 Score=35.90 Aligned_cols=13 Identities=31% Similarity=0.445 Sum_probs=9.4
Q ss_pred cccCCCCcEEeec
Q 015426 377 ISNEIKDGTVLPM 389 (407)
Q Consensus 377 ~~~ei~~G~v~~~ 389 (407)
..-.|.+|.|+.+
T Consensus 538 ~~~gik~GDvi~v 550 (652)
T COG2433 538 EEYGIKEGDVILV 550 (652)
T ss_pred HhhccccCcEEEE
Confidence 3456899998665
No 133
>smart00360 RRM RNA recognition motif.
Probab=85.44 E-value=1.8 Score=30.77 Aligned_cols=56 Identities=21% Similarity=0.434 Sum_probs=42.8
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015426 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
++..|+.+|+.+|- .|..+++.+... ...+-..++.|.+...|......+++..|.
T Consensus 8 ~~~~~l~~~f~~~g-~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~ 64 (71)
T smart00360 8 VTEEELRELFSKFG-KIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELD 64 (71)
T ss_pred cCHHHHHHHHHhhC-CEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeC
Confidence 36678888887664 577888887432 234557899999999999999999987764
No 134
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=85.19 E-value=62 Score=35.25 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHHHHHhHhHH
Q 015426 348 KDDKIQDSEAQLRDLMAYLEAEK 370 (407)
Q Consensus 348 ~~~~i~~Leeq~~dLm~~l~~~~ 370 (407)
++.++.+|++.++++--....+.
T Consensus 120 qEerL~ELE~~le~~~e~~~D~~ 142 (617)
T PF15070_consen 120 QEERLAELEEELERLQEQQEDRQ 142 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555554444443333
No 135
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=85.11 E-value=32 Score=32.73 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhHhHHHHhhhccccCCCCcEEe
Q 015426 355 SEAQLRDLMAYLEAEKTLQQLSISNEIKDGTVL 387 (407)
Q Consensus 355 Leeq~~dLm~~l~~~~~~~~~~~~~ei~~G~v~ 387 (407)
+.|..|.||..+....+. +..-++-.|+|.
T Consensus 147 ~~ek~r~vlea~~~E~~y---g~~i~~~~~~i~ 176 (251)
T PF11932_consen 147 LAEKFRRVLEAYQIEMEY---GRTIEVYQGTIT 176 (251)
T ss_pred HHHHHHHHHHHHHHHHHh---CCceeEEEEEEe
Confidence 356677777777666655 334444444443
No 136
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=85.00 E-value=39 Score=37.43 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHHHhHh
Q 015426 348 KDDKIQDSEAQLRDLMAYLEA 368 (407)
Q Consensus 348 ~~~~i~~Leeq~~dLm~~l~~ 368 (407)
..++++.+++++++|..-|+.
T Consensus 637 ~~~EL~~~~~~l~~l~~si~~ 657 (717)
T PF10168_consen 637 FKKELERMKDQLQDLKASIEQ 657 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334566666666666555544
No 137
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=84.88 E-value=0.51 Score=46.41 Aligned_cols=47 Identities=30% Similarity=0.622 Sum_probs=35.2
Q ss_pred CCCCCCCcccccccccccCCCceeeecC--CCccchhccccccCCCCCCcccccC
Q 015426 89 ASSTEQPSCPVCLERLDQDTSGILTTIC--NHSFHCSCISKWTDSSCPVCRYCQQ 141 (407)
Q Consensus 89 ~~~~e~~~C~iCle~~~~~~~~~~~~~C--~H~F~~~Cl~~w~~~~CP~Cr~~~~ 141 (407)
....+++.||||.+.+.. ....| ||.-|.+|-.+ ....||.||..+.
T Consensus 43 ~~~~~lleCPvC~~~l~~-----Pi~QC~nGHlaCssC~~~-~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 43 LLDLDLLDCPVCFNPLSP-----PIFQCDNGHLACSSCRTK-VSNKCPTCRLPIG 91 (299)
T ss_pred ccchhhccCchhhccCcc-----cceecCCCcEehhhhhhh-hcccCCccccccc
Confidence 345689999999999985 34556 57777777543 2378999999886
No 138
>PHA02562 46 endonuclease subunit; Provisional
Probab=84.59 E-value=43 Score=35.49 Aligned_cols=7 Identities=29% Similarity=0.676 Sum_probs=2.7
Q ss_pred hcCCccc
Q 015426 50 HFNGRQF 56 (407)
Q Consensus 50 ~~~g~~f 56 (407)
.+.|++|
T Consensus 50 ~l~G~~~ 56 (562)
T PHA02562 50 ALFGKPF 56 (562)
T ss_pred HHcCCCc
Confidence 3334433
No 139
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=84.26 E-value=49 Score=36.60 Aligned_cols=22 Identities=32% Similarity=0.712 Sum_probs=11.6
Q ss_pred HHHhhhHHHHHHHHHHHHHHHH
Q 015426 344 ALRAKDDKIQDSEAQLRDLMAY 365 (407)
Q Consensus 344 ~~~~~~~~i~~Leeq~~dLm~~ 365 (407)
.++.+++++..|+.++++|..|
T Consensus 560 elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 560 ELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555544444
No 140
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=84.02 E-value=39 Score=31.97 Aligned_cols=45 Identities=13% Similarity=0.237 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015426 297 QKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEERE 341 (407)
Q Consensus 297 ~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~ 341 (407)
..+.+|..+-+.+..|-+.|+++|+.|...+..+...++.+.+++
T Consensus 97 ~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l 141 (292)
T KOG4005|consen 97 YEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQEL 141 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 344455555555556666677777777766655555555544443
No 141
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=83.96 E-value=86 Score=36.35 Aligned_cols=27 Identities=15% Similarity=0.359 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHH-HhHhHHHHhhh
Q 015426 349 DDKIQDSEAQLRDLMA-YLEAEKTLQQL 375 (407)
Q Consensus 349 ~~~i~~Leeq~~dLm~-~l~~~~~~~~~ 375 (407)
...+..++++..+|+. -|+...|+++.
T Consensus 997 k~~~e~i~k~~~~lk~~rId~~~K~e~~ 1024 (1293)
T KOG0996|consen 997 KSELENIKKSENELKAERIDIENKLEAI 1024 (1293)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3466777788888888 77777777765
No 142
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=83.78 E-value=0.16 Score=57.72 Aligned_cols=47 Identities=28% Similarity=0.660 Sum_probs=39.0
Q ss_pred CCCCCcccccccccccCCCceeeecCCCccchhccccccC--CCCCCccccc
Q 015426 91 STEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD--SSCPVCRYCQ 140 (407)
Q Consensus 91 ~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~ 140 (407)
+...+.|++|++.+.. . -....|+|.+|+.|+..|.. ..||.|....
T Consensus 1150 ~~~~~~c~ic~dil~~-~--~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1150 LSGHFVCEICLDILRN-Q--GGIAGCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred hhcccchHHHHHHHHh-c--CCeeeechhHhhhHHHHHHHHhccCcchhhhh
Confidence 4577899999999983 1 34678999999999999975 8999998654
No 143
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=83.73 E-value=0.52 Score=41.68 Aligned_cols=45 Identities=27% Similarity=0.713 Sum_probs=33.1
Q ss_pred CCCCcccccccccccCCCceeeecCC--C---ccchhccccccC----CCCCCcccccC
Q 015426 92 TEQPSCPVCLERLDQDTSGILTTICN--H---SFHCSCISKWTD----SSCPVCRYCQQ 141 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~--H---~F~~~Cl~~w~~----~~CP~Cr~~~~ 141 (407)
...+.|=||.+.-++ ...||. . .-|.+|+..|.. .+||.|.+.+.
T Consensus 6 ~~~~~CRIC~~~~~~-----~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 6 LMDKCCWICKDEYDV-----VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCeeEecCCCCCC-----ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 467899999877442 223555 4 349999999964 78999988765
No 144
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=83.72 E-value=41 Score=32.03 Aligned_cols=78 Identities=15% Similarity=0.220 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--------HHHHHHhH
Q 015426 296 AQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREKMALRAKDDKIQDSEAQL--------RDLMAYLE 367 (407)
Q Consensus 296 ~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~--------~dLm~~l~ 367 (407)
.++...|...+..+..+...++..-..+......+...+.+++.++...+....++...+..+. .+|.++.+
T Consensus 102 k~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~ell~~ye 181 (239)
T COG1579 102 KERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDPELLSEYE 181 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 3455555555555555555555444445544455555555555555555544444444444443 34566666
Q ss_pred hHHHHh
Q 015426 368 AEKTLQ 373 (407)
Q Consensus 368 ~~~~~~ 373 (407)
..-+=+
T Consensus 182 ri~~~~ 187 (239)
T COG1579 182 RIRKNK 187 (239)
T ss_pred HHHhcC
Confidence 554443
No 145
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=83.45 E-value=34 Score=30.84 Aligned_cols=52 Identities=17% Similarity=0.307 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015426 260 LLAAQLENQKIYYETLLQEAKEETEKIISEAVKKAIAQKLQKMQAKLDRCVRE 312 (407)
Q Consensus 260 lL~~qle~qr~~~E~~l~~l~~~~~~~l~~~~~~~~~~~l~~l~~~l~~~~~e 312 (407)
+-.+.+|.+..-|+..+.+++.+.. .+...-...+......|+..++++..+
T Consensus 44 vtk~d~e~~~~~~~a~~~eLr~el~-~~~k~~~~~lr~~~e~L~~eie~l~~~ 95 (177)
T PF07798_consen 44 VTKSDLENQEYLFKAAIAELRSELQ-NSRKSEFAELRSENEKLQREIEKLRQE 95 (177)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788877778888888876652 122222223334444555555544443
No 146
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=83.34 E-value=96 Score=35.98 Aligned_cols=19 Identities=16% Similarity=0.422 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 015426 298 KLQKMQAKLDRCVREKKFL 316 (407)
Q Consensus 298 ~l~~l~~~l~~~~~e~~~l 316 (407)
+++.++..++.+.+|...+
T Consensus 859 ~l~~~~~~ie~l~kE~e~~ 877 (1293)
T KOG0996|consen 859 RLKELEEQIEELKKEVEEL 877 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444455555554443
No 147
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=83.26 E-value=70 Score=34.34 Aligned_cols=12 Identities=33% Similarity=0.249 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 015426 260 LLAAQLENQKIY 271 (407)
Q Consensus 260 lL~~qle~qr~~ 271 (407)
-+...|+.|+.-
T Consensus 277 ~l~~~L~~q~~e 288 (582)
T PF09731_consen 277 ELERALEEQREE 288 (582)
T ss_pred HHHHHHHHHHHH
Confidence 344555554443
No 148
>smart00362 RRM_2 RNA recognition motif.
Probab=83.24 E-value=1.9 Score=30.85 Aligned_cols=55 Identities=22% Similarity=0.416 Sum_probs=41.9
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015426 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
++..|+..|+.++- .|..+++++..+ .++-.+++.|.+...|......++|..|+
T Consensus 11 ~~~~~l~~~~~~~g-~v~~~~~~~~~~-~~~~~~~v~f~~~~~a~~a~~~~~~~~~~ 65 (72)
T smart00362 11 VTEEDLKELFSKFG-PIESVKIPKDTG-KSKGFAFVEFESEEDAEKAIEALNGTKLG 65 (72)
T ss_pred CCHHHHHHHHHhcC-CEEEEEEecCCC-CCCceEEEEeCCHHHHHHHHHHhCCcEEC
Confidence 35677888887655 467888888542 23457889999999999999999987764
No 149
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=83.07 E-value=38 Score=31.10 Aligned_cols=19 Identities=16% Similarity=0.048 Sum_probs=10.3
Q ss_pred HHHhhhHHHHHHHHHHHHH
Q 015426 344 ALRAKDDKIQDSEAQLRDL 362 (407)
Q Consensus 344 ~~~~~~~~i~~Leeq~~dL 362 (407)
.......+|..|++|+.++
T Consensus 173 ~teeLR~e~s~LEeql~q~ 191 (193)
T PF14662_consen 173 ITEELRLEKSRLEEQLSQM 191 (193)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3333444666666666554
No 150
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=83.00 E-value=38 Score=34.51 Aligned_cols=52 Identities=15% Similarity=0.350 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 015426 311 REKKFLDDLNENLLKNQEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDL 362 (407)
Q Consensus 311 ~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dL 362 (407)
.-+..|+.....+....+.|..-+..++..++..+...+..|..|++.|.+|
T Consensus 336 ~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~i~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 336 QTLSELESQQSDLQSQLKKWEELLNKVEEKFKENMETIEKNVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344455556666667778888888888888888888788888888888765
No 151
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=82.32 E-value=18 Score=38.64 Aligned_cols=67 Identities=16% Similarity=0.285 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 015426 297 QKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDLMA 364 (407)
Q Consensus 297 ~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dLm~ 364 (407)
..+.++..+++++..+...|+.....+.+..+.|+.++.++..+.... ..++.+|+.++..+..|-.
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~-~~~~rei~~~~~~I~~L~~ 488 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDK-VRKDREIRARDRRIERLEK 488 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHH
Confidence 456666667777777777777777777777777777777666555422 2223344444444444333
No 152
>PHA03096 p28-like protein; Provisional
Probab=81.78 E-value=0.41 Score=46.69 Aligned_cols=35 Identities=26% Similarity=0.562 Sum_probs=26.2
Q ss_pred CcccccccccccCC----CceeeecCCCccchhcccccc
Q 015426 95 PSCPVCLERLDQDT----SGILTTICNHSFHCSCISKWT 129 (407)
Q Consensus 95 ~~C~iCle~~~~~~----~~~~~~~C~H~F~~~Cl~~w~ 129 (407)
..|.||++....-. .--++..|.|.||..|+..|.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr 217 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWM 217 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHH
Confidence 78999998875311 001356899999999999994
No 153
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=81.68 E-value=99 Score=36.52 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHhH
Q 015426 351 KIQDSEAQLRDLMAYLE 367 (407)
Q Consensus 351 ~i~~Leeq~~dLm~~l~ 367 (407)
.|..|+.++..|..-|+
T Consensus 772 ~I~~l~~~i~~L~~~l~ 788 (1201)
T PF12128_consen 772 RIQQLKQEIEQLEKELK 788 (1201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555444433
No 154
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=81.68 E-value=58 Score=32.30 Aligned_cols=9 Identities=56% Similarity=1.110 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 015426 265 LENQKIYYE 273 (407)
Q Consensus 265 le~qr~~~E 273 (407)
|++.+.+|+
T Consensus 128 l~ak~~WYe 136 (312)
T smart00787 128 LEAKKMWYE 136 (312)
T ss_pred HHHHHHHHH
Confidence 344444555
No 155
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=81.56 E-value=59 Score=32.30 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=26.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhHhHHHHhh
Q 015426 340 REKMALRAKDDKIQDSEAQLRDLMAYLEAEKTLQQ 374 (407)
Q Consensus 340 ~~~~~~~~~~~~i~~Leeq~~dLm~~l~~~~~~~~ 374 (407)
+++..+...+..|+++.++..++..-|...+++..
T Consensus 234 el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 234 ELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666677888999999999988888877754
No 156
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=81.53 E-value=30 Score=34.36 Aligned_cols=21 Identities=10% Similarity=0.015 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHhHhHHH
Q 015426 351 KIQDSEAQLRDLMAYLEAEKT 371 (407)
Q Consensus 351 ~i~~Leeq~~dLm~~l~~~~~ 371 (407)
+...|+.|+.-+...|+.=++
T Consensus 114 e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 114 ERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555555444333
No 157
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=81.16 E-value=29 Score=34.45 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 015426 298 KLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWK 331 (407)
Q Consensus 298 ~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~ 331 (407)
+++.+....+.+.+++..++.-...+.+.+..++
T Consensus 51 el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le 84 (314)
T PF04111_consen 51 ELEKLEQEEEELLQELEELEKEREELDQELEELE 84 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444443333333333333333
No 158
>PRK00106 hypothetical protein; Provisional
Probab=81.08 E-value=83 Score=33.67 Aligned_cols=8 Identities=13% Similarity=0.364 Sum_probs=3.8
Q ss_pred cCCCCcEE
Q 015426 379 NEIKDGTV 386 (407)
Q Consensus 379 ~ei~~G~v 386 (407)
+-+.+-+|
T Consensus 219 ~~~~e~tv 226 (535)
T PRK00106 219 EYVTEQTI 226 (535)
T ss_pred hhhhhhee
Confidence 33445554
No 159
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=80.63 E-value=1.3e+02 Score=35.50 Aligned_cols=9 Identities=22% Similarity=0.379 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 015426 356 EAQLRDLMA 364 (407)
Q Consensus 356 eeq~~dLm~ 364 (407)
+..+.++..
T Consensus 473 ~~~~~~~~~ 481 (1163)
T COG1196 473 QEELQRLEK 481 (1163)
T ss_pred HHHHHHHHH
Confidence 333333333
No 160
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.53 E-value=33 Score=33.14 Aligned_cols=18 Identities=33% Similarity=0.578 Sum_probs=8.1
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 015426 319 LNENLLKNQEMWKAKISE 336 (407)
Q Consensus 319 ln~~l~~~~~~l~~kl~~ 336 (407)
+++.+...++.|..|+..
T Consensus 92 ~~~~I~~r~~~l~~raRA 109 (265)
T COG3883 92 LKENIVERQELLKKRARA 109 (265)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 161
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=80.26 E-value=0.84 Score=52.62 Aligned_cols=48 Identities=25% Similarity=0.713 Sum_probs=34.5
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhccc-----cccC-------CCCCCcccccC
Q 015426 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCIS-----KWTD-------SSCPVCRYCQQ 141 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~-----~w~~-------~~CP~Cr~~~~ 141 (407)
....|-||...-- +....+.+.|+|.||..|.. +|.+ .+||+|...+.
T Consensus 3485 ~DDmCmICFTE~L-~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3485 ADDMCMICFTEAL-SAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred cCceEEEEehhhh-CCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 4567888874432 12235689999999999964 4654 68999998764
No 162
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=80.04 E-value=57 Score=31.21 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHhh
Q 015426 350 DKIQDSEAQLRDLMAYLEAEKTLQQ 374 (407)
Q Consensus 350 ~~i~~Leeq~~dLm~~l~~~~~~~~ 374 (407)
+++.=|+-.+.+=-..++.-+.++.
T Consensus 147 ErnAfLESELdEke~llesvqRLkd 171 (333)
T KOG1853|consen 147 ERNAFLESELDEKEVLLESVQRLKD 171 (333)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4555566665555555555555544
No 163
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=79.94 E-value=48 Score=30.29 Aligned_cols=13 Identities=38% Similarity=0.866 Sum_probs=10.0
Q ss_pred HHHHHHHHhHhHH
Q 015426 358 QLRDLMAYLEAEK 370 (407)
Q Consensus 358 q~~dLm~~l~~~~ 370 (407)
.+++|-.||+.+.
T Consensus 133 eLKElcl~LDeer 145 (195)
T PF10226_consen 133 ELKELCLYLDEER 145 (195)
T ss_pred HHHHHHHHHhccc
Confidence 4677888988776
No 164
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=79.71 E-value=37 Score=28.81 Aligned_cols=20 Identities=20% Similarity=0.209 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 015426 263 AQLENQKIYYETLLQEAKEE 282 (407)
Q Consensus 263 ~qle~qr~~~E~~l~~l~~~ 282 (407)
.++|.+...+...+..+...
T Consensus 26 r~~E~E~~~l~~el~~l~~~ 45 (120)
T PF12325_consen 26 RRLEGELASLQEELARLEAE 45 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555443
No 165
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=79.56 E-value=0.47 Score=51.40 Aligned_cols=59 Identities=19% Similarity=0.271 Sum_probs=43.4
Q ss_pred CCCcccccccccccCCCceeeec---CCCccchhccccccC--------CCCCCcccccCCC--Cccceeec
Q 015426 93 EQPSCPVCLERLDQDTSGILTTI---CNHSFHCSCISKWTD--------SSCPVCRYCQQQP--EKSICFVC 151 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~---C~H~F~~~Cl~~w~~--------~~CP~Cr~~~~~~--~~~~C~~C 151 (407)
+..+|++|.-.+...+.+.-.+| |+|.||..||..|.+ -.|+.|..++..+ ....|..|
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiD 166 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVD 166 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchh
Confidence 66789999988876555554555 999999999999964 4578888877633 24556655
No 166
>PHA02862 5L protein; Provisional
Probab=79.51 E-value=0.74 Score=40.03 Aligned_cols=42 Identities=21% Similarity=0.688 Sum_probs=31.7
Q ss_pred CcccccccccccCCCceeeecCCC-----ccchhccccccC----CCCCCcccccC
Q 015426 95 PSCPVCLERLDQDTSGILTTICNH-----SFHCSCISKWTD----SSCPVCRYCQQ 141 (407)
Q Consensus 95 ~~C~iCle~~~~~~~~~~~~~C~H-----~F~~~Cl~~w~~----~~CP~Cr~~~~ 141 (407)
+.|=||.+.-++. .-||.. .-|..|+.+|.. ..||.|++.+.
T Consensus 3 diCWIC~~~~~e~-----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCDER-----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCCCC-----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 6799999875431 346553 489999999964 78999998774
No 167
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.21 E-value=1.3e+02 Score=35.99 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=15.4
Q ss_pred ccchhccccc--c-CCCCCCcccccC
Q 015426 119 SFHCSCISKW--T-DSSCPVCRYCQQ 141 (407)
Q Consensus 119 ~F~~~Cl~~w--~-~~~CP~Cr~~~~ 141 (407)
.|-..|+... . ...||+|...|.
T Consensus 663 ~~~~k~ie~a~~~~~~~C~LC~R~f~ 688 (1311)
T TIGR00606 663 AVYSQFITQLTDENQSCCPVCQRVFQ 688 (1311)
T ss_pred HHHHHHHHHHhhccCCcCCCCCCCCC
Confidence 3555666555 2 268999988886
No 168
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=79.09 E-value=73 Score=33.76 Aligned_cols=70 Identities=19% Similarity=0.185 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH------------HHHhhhHHHHHHHHHHHHHHHHhHhH
Q 015426 302 MQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREKM------------ALRAKDDKIQDSEAQLRDLMAYLEAE 369 (407)
Q Consensus 302 l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~------------~~~~~~~~i~~Leeq~~dLm~~l~~~ 369 (407)
.+.+..++.+.+..|+.-.-....+...+..++.+..+.+.+ ...-....|++|..|+.+++..+++-
T Consensus 394 i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~mek~nLPGlPe~~l~l~~~~~~~i~~l~~eLse~pinm~~v 473 (570)
T COG4477 394 IEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYMEKSNLPGLPETFLSLFFTAGHEIQDLMKELSEVPINMEAV 473 (570)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhhhhHHHHHHHHHhhcCCcHHHH
Confidence 333333333444444444444445555566666555544433 12223467788888888877777764
Q ss_pred HH
Q 015426 370 KT 371 (407)
Q Consensus 370 ~~ 371 (407)
..
T Consensus 474 ~~ 475 (570)
T COG4477 474 SA 475 (570)
T ss_pred HH
Confidence 43
No 169
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=79.01 E-value=53 Score=32.10 Aligned_cols=12 Identities=17% Similarity=0.177 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 015426 263 AQLENQKIYYET 274 (407)
Q Consensus 263 ~qle~qr~~~E~ 274 (407)
+|+++.+.-.++
T Consensus 230 ~QM~s~~~nIe~ 241 (384)
T KOG0972|consen 230 EQMNSMHKNIEQ 241 (384)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 170
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=78.97 E-value=1.2e+02 Score=35.31 Aligned_cols=29 Identities=14% Similarity=0.266 Sum_probs=22.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhHhHH
Q 015426 342 KMALRAKDDKIQDSEAQLRDLMAYLEAEK 370 (407)
Q Consensus 342 ~~~~~~~~~~i~~Leeq~~dLm~~l~~~~ 370 (407)
..++..+.+++..|+..++.+..+|..+-
T Consensus 1723 ~~~L~~~~aeL~~Le~r~~~vl~~I~~rv 1751 (1758)
T KOG0994|consen 1723 EQALEDKAAELAGLEKRVESVLDHINERV 1751 (1758)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHhhhh
Confidence 44677777888999999998888876553
No 171
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=78.95 E-value=88 Score=32.73 Aligned_cols=56 Identities=7% Similarity=0.077 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015426 262 AAQLENQKIYYETLLQEAKEETE---KIISEAV----------KKAIAQKLQKMQAKLDRCVREKKFLD 317 (407)
Q Consensus 262 ~~qle~qr~~~E~~l~~l~~~~~---~~l~~~~----------~~~~~~~l~~l~~~l~~~~~e~~~l~ 317 (407)
.+....-.++++.++.+++.+.+ ..+.... ......++..+++++..++.++..++
T Consensus 156 ~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~ 224 (498)
T TIGR03007 156 RQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAI 224 (498)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666554431 1121111 11233556666666666655554433
No 172
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=78.94 E-value=61 Score=30.84 Aligned_cols=11 Identities=18% Similarity=0.244 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q 015426 350 DKIQDSEAQLR 360 (407)
Q Consensus 350 ~~i~~Leeq~~ 360 (407)
..|..|+..|.
T Consensus 109 ~m~~~L~~~v~ 119 (251)
T PF11932_consen 109 QMIDELEQFVE 119 (251)
T ss_pred HHHHHHHHHHh
Confidence 34444544444
No 173
>PRK10884 SH3 domain-containing protein; Provisional
Probab=78.87 E-value=41 Score=31.31 Aligned_cols=9 Identities=33% Similarity=0.464 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 015426 353 QDSEAQLRD 361 (407)
Q Consensus 353 ~~Leeq~~d 361 (407)
..|+.++.+
T Consensus 156 ~~l~~~~~~ 164 (206)
T PRK10884 156 DAANLQLDD 164 (206)
T ss_pred HHHHHHHHH
Confidence 333434333
No 174
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=78.64 E-value=44 Score=29.09 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 015426 302 MQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREKMALRAKDDKIQDSEAQLR 360 (407)
Q Consensus 302 l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~ 360 (407)
++.+...+..+...+...++...+....+...+..........++.++.+|..|.+++.
T Consensus 92 ~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 92 AEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344444444444444555555555556666666666677778888888888888764
No 175
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=78.57 E-value=83 Score=33.85 Aligned_cols=20 Identities=15% Similarity=0.434 Sum_probs=9.7
Q ss_pred hHhHHHHhhhccccCCCCcEEe
Q 015426 366 LEAEKTLQQLSISNEIKDGTVL 387 (407)
Q Consensus 366 l~~~~~~~~~~~~~ei~~G~v~ 387 (407)
..++++|+.. ..++..|.|.
T Consensus 451 ~~~~~~i~~l--~~~L~~g~VN 470 (569)
T PRK04778 451 FEVSDEIEAL--AEELEEKPIN 470 (569)
T ss_pred HHHHHHHHHH--HHHhccCCCC
Confidence 3455555543 3344445553
No 176
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=78.40 E-value=8.9 Score=27.80 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 015426 333 KISEIEEREKMALRAKDDKIQDSEAQLRDLMAY 365 (407)
Q Consensus 333 kl~~~~~~~~~~~~~~~~~i~~Leeq~~dLm~~ 365 (407)
|...+....-..+.....+|.+||..+.|||..
T Consensus 18 kFq~mS~~I~~riDeM~~RIDdLE~si~dl~~q 50 (54)
T PF06825_consen 18 KFQTMSDQILGRIDEMSSRIDDLEKSIADLMTQ 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHH------
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 333333333334444556788888888888854
No 177
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=78.36 E-value=1e+02 Score=33.01 Aligned_cols=12 Identities=25% Similarity=0.481 Sum_probs=8.5
Q ss_pred EEeccCCcchhh
Q 015426 196 VWDYAGDNYVHR 207 (407)
Q Consensus 196 v~cy~cd~~vhr 207 (407)
+++|.++.|-|-
T Consensus 197 f~dy~~~~Y~~f 208 (581)
T KOG0995|consen 197 FFDYTIRSYTSF 208 (581)
T ss_pred HHHHHHHHHHHH
Confidence 458888888654
No 178
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=78.27 E-value=62 Score=30.57 Aligned_cols=19 Identities=21% Similarity=0.330 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHhHh
Q 015426 350 DKIQDSEAQLRDLMAYLEA 368 (407)
Q Consensus 350 ~~i~~Leeq~~dLm~~l~~ 368 (407)
..+..|+.++.+|-.-|..
T Consensus 197 ~~v~~Le~~id~le~eL~~ 215 (237)
T PF00261_consen 197 RRVKKLEKEIDRLEDELEK 215 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666666666555553
No 179
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=78.25 E-value=1e+02 Score=33.00 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHhHhH
Q 015426 353 QDSEAQLRDLMAYLEAE 369 (407)
Q Consensus 353 ~~Leeq~~dLm~~l~~~ 369 (407)
.+++-++.+|+--|+..
T Consensus 200 ~d~~n~~q~Lleel~f~ 216 (546)
T KOG0977|consen 200 VDLQNRVQTLLEELAFL 216 (546)
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 34444444444444433
No 180
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=78.20 E-value=1.1e+02 Score=33.39 Aligned_cols=17 Identities=18% Similarity=0.331 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 015426 296 AQKLQKMQAKLDRCVRE 312 (407)
Q Consensus 296 ~~~l~~l~~~l~~~~~e 312 (407)
.+++..|+..+-++.++
T Consensus 166 K~QL~Elq~~Fv~ltne 182 (617)
T PF15070_consen 166 KEQLAELQDAFVKLTNE 182 (617)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34555555555555444
No 181
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=77.92 E-value=40 Score=28.20 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015426 259 ELLAAQLENQKIYYETLLQEAKEET 283 (407)
Q Consensus 259 ~lL~~qle~qr~~~E~~l~~l~~~~ 283 (407)
.++...|+.+|..|+.+...+..+.
T Consensus 10 ~~~~~~l~~kr~e~~~~~~~~~~~e 34 (126)
T PF13863_consen 10 FLVQLALDTKREEIERREEQLKQRE 34 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888888887777665543
No 182
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=77.70 E-value=1e+02 Score=32.89 Aligned_cols=6 Identities=17% Similarity=0.279 Sum_probs=3.1
Q ss_pred eEEecc
Q 015426 195 RVWDYA 200 (407)
Q Consensus 195 ~v~cy~ 200 (407)
..|||.
T Consensus 90 YqfcYv 95 (546)
T PF07888_consen 90 YQFCYV 95 (546)
T ss_pred EEEEEE
Confidence 445554
No 183
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=77.13 E-value=38 Score=27.53 Aligned_cols=65 Identities=17% Similarity=0.195 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 015426 293 KAIAQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEM---WKAKISEIEEREKMALRAKDDKIQDSEAQLRD 361 (407)
Q Consensus 293 ~~~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~---l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~d 361 (407)
+....+..++......+......+++....|....+. +..++.. +.......++....||.+++.
T Consensus 31 ~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~----LE~~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 31 KATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTE----LEQTVYELDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhc
Confidence 3334455555555544444444444444444322222 2222222 333444555666666666554
No 184
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=76.90 E-value=33 Score=35.80 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHhHh
Q 015426 349 DDKIQDSEAQLRDLMAYLEA 368 (407)
Q Consensus 349 ~~~i~~Leeq~~dLm~~l~~ 368 (407)
..++..|+.++.+|...|+.
T Consensus 122 ~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 122 KSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33455566666666666643
No 185
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=76.64 E-value=1.5 Score=43.32 Aligned_cols=46 Identities=22% Similarity=0.572 Sum_probs=37.1
Q ss_pred CCCCCcccccccccccCCCceeeecCCCccchhcccccc----CCCCCCccccc
Q 015426 91 STEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWT----DSSCPVCRYCQ 140 (407)
Q Consensus 91 ~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~----~~~CP~Cr~~~ 140 (407)
..+...|-||.+.+.- ..++||+|..|--|.-+.. ...||+||+..
T Consensus 58 DEen~~C~ICA~~~TY----s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 58 DEENMNCQICAGSTTY----SARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ccccceeEEecCCceE----EEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 3467789999998774 5689999999999976642 38999999865
No 186
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=76.58 E-value=47 Score=28.63 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHhHhHHHHhhhccccCCCCcEEee
Q 015426 349 DDKIQDSEAQLRDLMAYLEAEKTLQQLSISNEIKDGTVLP 388 (407)
Q Consensus 349 ~~~i~~Leeq~~dLm~~l~~~~~~~~~~~~~ei~~G~v~~ 388 (407)
++++..+.++.+.|.+.++.-+++ +.++||..|+|..
T Consensus 66 ~~e~~~r~e~k~~l~~ql~qv~~L---~lgsEv~qg~vE~ 102 (131)
T PF11068_consen 66 EQEKQERLEQKNQLLQQLEQVQKL---ELGSEVVQGQVES 102 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS----TT-EEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC---CCCCEEeeeeeEE
Confidence 345666788888888887765555 7889999999843
No 187
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=76.51 E-value=48 Score=28.41 Aligned_cols=70 Identities=17% Similarity=0.217 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---------HHhhhHHHHHHHHHHHHHHHHhH
Q 015426 298 KLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREKMA---------LRAKDDKIQDSEAQLRDLMAYLE 367 (407)
Q Consensus 298 ~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~~---------~~~~~~~i~~Leeq~~dLm~~l~ 367 (407)
-.+.|+..++.+..|+..|+++-..=......++-...+.+.+.... ....+.+..+|-+|-.||+-|--
T Consensus 35 l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLqlhcqeke~eaqrq~~~~~eck~R~~fe~qLE~lm~qHKdLwefh~ 113 (134)
T PF15233_consen 35 LWEALQRELDSLNGEKVHLEEILNKKQETLRILQLHCQEKESEAQRQQTLLQECKLRLDFEEQLEDLMGQHKDLWEFHM 113 (134)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34556667777766666665554422222222332222222221111 12233456666666666666654
No 188
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=76.27 E-value=9.7 Score=31.92 Aligned_cols=19 Identities=32% Similarity=0.616 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHhHh
Q 015426 350 DKIQDSEAQLRDLMAYLEA 368 (407)
Q Consensus 350 ~~i~~Leeq~~dLm~~l~~ 368 (407)
+++++|+..++||-++|++
T Consensus 105 ~EvreLEQlV~DLE~WLDa 123 (135)
T PF15466_consen 105 KEVRELEQLVRDLEEWLDA 123 (135)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3778899999999999987
No 189
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=76.04 E-value=76 Score=30.42 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHhh
Q 015426 350 DKIQDSEAQLRDLMAYLEAEKTLQQ 374 (407)
Q Consensus 350 ~~i~~Leeq~~dLm~~l~~~~~~~~ 374 (407)
+.+.-|.+.-|||..-|..+++-..
T Consensus 164 esvqRLkdEardlrqelavr~kq~E 188 (333)
T KOG1853|consen 164 ESVQRLKDEARDLRQELAVRTKQTE 188 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4667799999999999998887643
No 190
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=75.34 E-value=1.5e+02 Score=33.37 Aligned_cols=22 Identities=14% Similarity=0.039 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 015426 261 LAAQLENQKIYYETLLQEAKEE 282 (407)
Q Consensus 261 L~~qle~qr~~~E~~l~~l~~~ 282 (407)
|-..|+.++..++....++++.
T Consensus 516 li~~L~~~~~~~e~~~~~~~~~ 537 (771)
T TIGR01069 516 LIEKLSALEKELEQKNEHLEKL 537 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555566555555433
No 191
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=74.71 E-value=34 Score=25.79 Aligned_cols=32 Identities=16% Similarity=0.312 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 015426 301 KMQAKLDRCVREKKFLDDLNENLLKNQEMWKA 332 (407)
Q Consensus 301 ~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~ 332 (407)
.|..+++.+..-...|+.-|..|...+..|..
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ 35 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWRE 35 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555555555444443
No 192
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=74.29 E-value=1.1e+02 Score=34.76 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 015426 261 LAAQLENQKIYYETLLQEAKEET 283 (407)
Q Consensus 261 L~~qle~qr~~~E~~l~~l~~~~ 283 (407)
=..++...-.|.+++|..|+++.
T Consensus 185 K~ekI~ell~yieerLreLEeEK 207 (1200)
T KOG0964|consen 185 KREKINELLKYIEERLRELEEEK 207 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhH
Confidence 33455555556666666655443
No 193
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.17 E-value=2.1 Score=39.81 Aligned_cols=38 Identities=32% Similarity=0.637 Sum_probs=28.6
Q ss_pred ccccccccccCCCceeeecCCCc-cchhccccccCCCCCCccccc
Q 015426 97 CPVCLERLDQDTSGILTTICNHS-FHCSCISKWTDSSCPVCRYCQ 140 (407)
Q Consensus 97 C~iCle~~~~~~~~~~~~~C~H~-F~~~Cl~~w~~~~CP~Cr~~~ 140 (407)
|-.|-+.=.. .+++||.|. +|..|-.. -..||+|+...
T Consensus 161 Cr~C~~~~~~----VlllPCrHl~lC~~C~~~--~~~CPiC~~~~ 199 (207)
T KOG1100|consen 161 CRKCGEREAT----VLLLPCRHLCLCGICDES--LRICPICRSPK 199 (207)
T ss_pred ceecCcCCce----EEeecccceEeccccccc--CccCCCCcChh
Confidence 8888887443 789999975 78888654 35699998754
No 194
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.99 E-value=1e+02 Score=32.91 Aligned_cols=36 Identities=28% Similarity=0.380 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHhhh---ccccCCCCcEE
Q 015426 351 KIQDSEAQLRDLMAYLEAEKTLQQL---SISNEIKDGTV 386 (407)
Q Consensus 351 ~i~~Leeq~~dLm~~l~~~~~~~~~---~~~~ei~~G~v 386 (407)
.+++-...++|+..++.+-+|++++ ..+.+-++|.+
T Consensus 128 ~~Re~k~~lldl~~v~~~ieKL~k~L~s~psk~q~~~a~ 166 (705)
T KOG2307|consen 128 SNREKKIELLDLIYVLVAIEKLSKMLLSPPSKEQQDGAT 166 (705)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccc
Confidence 4556677799999999999999998 44556555554
No 195
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=73.86 E-value=61 Score=28.88 Aligned_cols=51 Identities=18% Similarity=0.311 Sum_probs=32.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhHHHH
Q 015426 318 DLNENLLKNQEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDLMAYLEAEKTL 372 (407)
Q Consensus 318 eln~~l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dLm~~l~~~~~~ 372 (407)
.-|+.|......|+.+++.++.+.. ...+++..+++.-+.|+..|+-..++
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~----~L~~~~~~~~eDY~~L~~Im~RARkl 154 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELE----KLRQRLSTIEEDYQTLIDIMDRARKL 154 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556666666555533 33445666788888888888877665
No 196
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=73.78 E-value=11 Score=30.84 Aligned_cols=67 Identities=19% Similarity=0.398 Sum_probs=46.0
Q ss_pred CChhHHhHhhHHHHH---hhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccccCC-CceeEEEE
Q 015426 1 MTYADFCQFCASFIQ---HILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFNSLE-EEVCHVLF 68 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~---~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~~l~-~~~c~~v~ 68 (407)
+|..+++..+..... +...++|=- ...-|.--+-+-|.+...|..|+..|+|+.++... ..+|.+.+
T Consensus 13 ~t~~~L~~~l~~~~~g~yDF~YLPiDf-~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~y 83 (97)
T PF04059_consen 13 YTQEMLIQILDEHFKGKYDFFYLPIDF-KNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEISY 83 (97)
T ss_pred CCHHHHHHHHHHhccCcceEEEeeeec-cCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEeh
Confidence 466777777776543 222222221 12236667889999999999999999999987665 45888865
No 197
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=73.49 E-value=1e+02 Score=30.66 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=15.2
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHhH
Q 015426 344 ALRAKDDKIQDSEAQLRDLMAYLE 367 (407)
Q Consensus 344 ~~~~~~~~i~~Leeq~~dLm~~l~ 367 (407)
.++...+++.++.+++.++-..++
T Consensus 245 ~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 245 KIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566677777777666665
No 198
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=73.36 E-value=70 Score=34.98 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q 015426 350 DKIQDSEAQLRDLMAYL 366 (407)
Q Consensus 350 ~~i~~Leeq~~dLm~~l 366 (407)
..+..+.+|+....-+.
T Consensus 300 ~ll~~~~~q~~~e~~~~ 316 (650)
T TIGR03185 300 NLLDSTKAQLQKEEQSQ 316 (650)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35556666666665443
No 199
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=73.25 E-value=1.2e+02 Score=33.97 Aligned_cols=13 Identities=31% Similarity=0.409 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHHH
Q 015426 349 DDKIQDSEAQLRD 361 (407)
Q Consensus 349 ~~~i~~Leeq~~d 361 (407)
+...++|+.+-.+
T Consensus 350 ddk~~eLEKkrd~ 362 (1265)
T KOG0976|consen 350 DDKLNELEKKRDM 362 (1265)
T ss_pred hHHHHHHHHHHHH
Confidence 3444555555444
No 200
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=73.19 E-value=1.8 Score=41.95 Aligned_cols=44 Identities=25% Similarity=0.642 Sum_probs=29.4
Q ss_pred cccccccc-cc-cCCCceeeecCCCccchhccccc---cCCCCCCccccc
Q 015426 96 SCPVCLER-LD-QDTSGILTTICNHSFHCSCISKW---TDSSCPVCRYCQ 140 (407)
Q Consensus 96 ~C~iCle~-~~-~~~~~~~~~~C~H~F~~~Cl~~w---~~~~CP~Cr~~~ 140 (407)
.||+|... +. ++. ...+-+|+|..|.+|+... +...||.|-...
T Consensus 2 ~Cp~CKt~~Y~np~l-k~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iL 50 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDL-KLMINECGHRLCESCVDRIFSLGPAQCPECMVIL 50 (300)
T ss_pred CCcccccceecCccc-eeeeccccchHHHHHHHHHHhcCCCCCCcccchh
Confidence 58888633 32 222 1234499999999998875 347788887644
No 201
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=73.18 E-value=1.6 Score=32.15 Aligned_cols=33 Identities=33% Similarity=0.774 Sum_probs=26.3
Q ss_pred CCCCCcccccCCCCccceeecccCCCcccccccCccc
Q 015426 131 SSCPVCRYCQQQPEKSICFVCQTSENLWMCVICGFVG 167 (407)
Q Consensus 131 ~~CP~Cr~~~~~~~~~~C~~C~~~~~l~~Cl~Cg~~~ 167 (407)
..||.|-... ..+|..|....+.+.|..||+.|
T Consensus 28 F~CPnCGe~~----I~Rc~~CRk~g~~Y~Cp~CGF~G 60 (61)
T COG2888 28 FPCPNCGEVE----IYRCAKCRKLGNPYRCPKCGFEG 60 (61)
T ss_pred eeCCCCCcee----eehhhhHHHcCCceECCCcCccC
Confidence 5788887432 25888999999999999999865
No 202
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=72.61 E-value=1.7 Score=31.93 Aligned_cols=33 Identities=33% Similarity=0.740 Sum_probs=25.2
Q ss_pred CCCCCcccccCCCCccceeecccCCCcccccccCccc
Q 015426 131 SSCPVCRYCQQQPEKSICFVCQTSENLWMCVICGFVG 167 (407)
Q Consensus 131 ~~CP~Cr~~~~~~~~~~C~~C~~~~~l~~Cl~Cg~~~ 167 (407)
..||.|-... ..+|..|....+.+.|..||+.|
T Consensus 26 F~CPnCG~~~----I~RC~~CRk~~~~Y~CP~CGF~G 58 (59)
T PRK14890 26 FLCPNCGEVI----IYRCEKCRKQSNPYTCPKCGFEG 58 (59)
T ss_pred eeCCCCCCee----EeechhHHhcCCceECCCCCCcC
Confidence 5688886541 24788888888999999999865
No 203
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=72.11 E-value=1.1 Score=48.31 Aligned_cols=45 Identities=27% Similarity=0.645 Sum_probs=36.7
Q ss_pred CCCCcccccccccccCCCceeeecCCCccchhcccccc-----CCCCCCccccc
Q 015426 92 TEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWT-----DSSCPVCRYCQ 140 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~-----~~~CP~Cr~~~ 140 (407)
.-.+.||||+..+.. |.++.|.|.||..|+.... ...||+|+...
T Consensus 19 ~k~lEc~ic~~~~~~----p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~ 68 (684)
T KOG4362|consen 19 QKILECPICLEHVKE----PSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDI 68 (684)
T ss_pred hhhccCCceeEEeec----cchhhhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence 356899999999987 7899999999999986632 26799998544
No 204
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.98 E-value=1.4 Score=43.73 Aligned_cols=47 Identities=21% Similarity=0.505 Sum_probs=33.3
Q ss_pred CCCCCcccccccccccCCCceeeecCCCccchhccccccC--CCCCCcccccC
Q 015426 91 STEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 91 ~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
..|...||||.-.--. .+..||+|.-|..||.+..- ..|=-|++.+.
T Consensus 419 ~sEd~lCpICyA~pi~----Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 419 DSEDNLCPICYAGPIN----AVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred CcccccCcceecccch----hhccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 3588899999755332 35779999999999987542 45655655543
No 205
>PRK02224 chromosome segregation protein; Provisional
Probab=71.92 E-value=1.8e+02 Score=32.87 Aligned_cols=13 Identities=15% Similarity=-0.102 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 015426 268 QKIYYETLLQEAK 280 (407)
Q Consensus 268 qr~~~E~~l~~l~ 280 (407)
.+..++.++..++
T Consensus 181 ~~~~~~~~~~~~~ 193 (880)
T PRK02224 181 VLSDQRGSLDQLK 193 (880)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 206
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.79 E-value=99 Score=34.34 Aligned_cols=13 Identities=31% Similarity=0.595 Sum_probs=6.3
Q ss_pred ccChhhHhhHhhh
Q 015426 38 FDSQDSADKFYQH 50 (407)
Q Consensus 38 f~~~~~a~~f~~~ 50 (407)
|-+-+.|.-||..
T Consensus 31 fitg~qArnfflq 43 (1118)
T KOG1029|consen 31 FITGDQARNFFLQ 43 (1118)
T ss_pred ccchHhhhhhHHh
Confidence 4445555555443
No 207
>PRK04406 hypothetical protein; Provisional
Probab=71.68 E-value=40 Score=26.06 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=15.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHh
Q 015426 343 MALRAKDDKIQDSEAQLRDLMAYL 366 (407)
Q Consensus 343 ~~~~~~~~~i~~Leeq~~dLm~~l 366 (407)
.++..++++|..|+.|++.|...+
T Consensus 32 ~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 32 DALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445567777888888775544
No 208
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=71.65 E-value=1.5e+02 Score=31.87 Aligned_cols=31 Identities=32% Similarity=0.438 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015426 247 SSKVEAIVNEYNELLAAQLENQKIYYETLLQEAKE 281 (407)
Q Consensus 247 ~~k~~~~~~ey~~lL~~qle~qr~~~E~~l~~l~~ 281 (407)
..+.+....+|..+.+.++-. .+..|.++++
T Consensus 59 ~~~fe~w~~~w~~i~~~~~~~----ie~~L~~ae~ 89 (560)
T PF06160_consen 59 EEKFEEWRQKWDEIVTKQLPE----IEEQLFEAEE 89 (560)
T ss_pred HHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHH
Confidence 345666666777777666654 4555554443
No 209
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=71.35 E-value=1.2e+02 Score=30.47 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 015426 265 LENQKIYYETLLQEAKEET 283 (407)
Q Consensus 265 le~qr~~~E~~l~~l~~~~ 283 (407)
....+.++++++.+++.+.
T Consensus 168 ~~~a~~fl~~ql~~~~~~l 186 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRL 186 (362)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455567777777776554
No 210
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=71.26 E-value=55 Score=26.67 Aligned_cols=24 Identities=17% Similarity=0.451 Sum_probs=14.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHH
Q 015426 342 KMALRAKDDKIQDSEAQLRDLMAY 365 (407)
Q Consensus 342 ~~~~~~~~~~i~~Leeq~~dLm~~ 365 (407)
+..+...+.+..++++++..++..
T Consensus 80 k~~i~~le~~~~~~e~~l~~~l~~ 103 (108)
T PF02403_consen 80 KEEIKELEEQLKELEEELNELLLS 103 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334444555666677777776653
No 211
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=71.20 E-value=54 Score=26.57 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 015426 260 LLAAQLENQKIYYETLLQEAKEET 283 (407)
Q Consensus 260 lL~~qle~qr~~~E~~l~~l~~~~ 283 (407)
.|..+++.+|+.+..+-.+|+++.
T Consensus 3 ~Lr~~v~~er~~~~~L~~ELEeER 26 (94)
T PF04576_consen 3 RLRRAVEAERKALAALYAELEEER 26 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888888888888887665
No 212
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.13 E-value=1.6 Score=44.54 Aligned_cols=35 Identities=20% Similarity=0.554 Sum_probs=25.4
Q ss_pred CCCcccccc-cccccCCCceeeecCCCccchhccccc
Q 015426 93 EQPSCPVCL-ERLDQDTSGILTTICNHSFHCSCISKW 128 (407)
Q Consensus 93 e~~~C~iCl-e~~~~~~~~~~~~~C~H~F~~~Cl~~w 128 (407)
...+|.||. +......... +..|+|.||.+|+.+.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~-~~~C~H~fC~~C~k~~ 180 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFS-VLKCGHRFCKDCVKQH 180 (384)
T ss_pred ccccCccCccccccHhhhHH-HhcccchhhhHHhHHH
Confidence 467899999 5544323233 7899999999998754
No 213
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=71.02 E-value=49 Score=33.07 Aligned_cols=102 Identities=25% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH
Q 015426 261 LAAQLENQKIYYETLLQEAKEETEKIISEAVK-----KAIAQKLQKMQAKLDRCVREKKFLDD-----------LNENLL 324 (407)
Q Consensus 261 L~~qle~qr~~~E~~l~~l~~~~~~~l~~~~~-----~~~~~~l~~l~~~l~~~~~e~~~l~e-----------ln~~l~ 324 (407)
|..||++.|...+...--|..+..+.+..+.+ ..++-++++-..+..+..++..+.++ +-..+.
T Consensus 172 l~~qLeeEk~RHeqis~mLilEcKka~~KaaEegqKA~ei~Lklekdksr~~k~eee~aaERerglqteaqvek~i~Efd 251 (561)
T KOG1103|consen 172 LEMQLEEEKKRHEQISLMLILECKKALLKAAEEGQKAEEIMLKLEKDKSRTKKGEEEAAAERERGLQTEAQVEKLIEEFD 251 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhccCccccCCChHHHHHHHhhccchHHHHHHHHHHHH
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHH
Q 015426 325 KNQEMWKAKISEIEEREKMALRAKD---DKIQDSEAQLRDL 362 (407)
Q Consensus 325 ~~~~~l~~kl~~~~~~~~~~~~~~~---~~i~~Leeq~~dL 362 (407)
...+.|+.+++..+.+.+....... +.+.+|+.....|
T Consensus 252 iEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~ 292 (561)
T KOG1103|consen 252 IEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHL 292 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
No 214
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=70.70 E-value=1.1e+02 Score=30.14 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015426 246 LSSKVEAIVNEYNELLAAQLENQKI 270 (407)
Q Consensus 246 ~~~k~~~~~~ey~~lL~~qle~qr~ 270 (407)
...++..+..+ +..|...|+.-|.
T Consensus 25 l~~~~~sL~qe-n~~Lk~El~~ek~ 48 (310)
T PF09755_consen 25 LRKRIESLQQE-NRVLKRELETEKA 48 (310)
T ss_pred HHHHHHHHHHH-hHHHHHHHHHHHH
Confidence 45666776665 3445555554443
No 215
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=70.65 E-value=1.4e+02 Score=33.63 Aligned_cols=12 Identities=17% Similarity=0.177 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHH
Q 015426 271 YYETLLQEAKEE 282 (407)
Q Consensus 271 ~~E~~l~~l~~~ 282 (407)
-++..|.+++++
T Consensus 517 ~~~~li~~l~~~ 528 (782)
T PRK00409 517 KLNELIASLEEL 528 (782)
T ss_pred HHHHHHHHHHHH
Confidence 466666666554
No 216
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=70.04 E-value=1.9e+02 Score=32.40 Aligned_cols=7 Identities=14% Similarity=0.449 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 015426 355 SEAQLRD 361 (407)
Q Consensus 355 Leeq~~d 361 (407)
+++|+..
T Consensus 391 rqeQide 397 (1265)
T KOG0976|consen 391 RQEQIDE 397 (1265)
T ss_pred HHHHHHH
Confidence 4444433
No 217
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=70.03 E-value=1.6e+02 Score=31.62 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015426 247 SSKVEAIVNEYNELLAAQLENQKIYYETLLQEAKE 281 (407)
Q Consensus 247 ~~k~~~~~~ey~~lL~~qle~qr~~~E~~l~~l~~ 281 (407)
..+.+....+|..+.+..+.. .+..|.+++.
T Consensus 63 ~~~f~~w~~~~~~i~~~~~~~----ie~~l~~ae~ 93 (569)
T PRK04778 63 EEKFEEWRQKWDEIVTNSLPD----IEEQLFEAEE 93 (569)
T ss_pred HHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHH
Confidence 456777778888888777765 6666666554
No 218
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=69.51 E-value=1.1e+02 Score=29.66 Aligned_cols=31 Identities=23% Similarity=0.212 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHhhhccccC
Q 015426 350 DKIQDSEAQLRDLMAYLEAEKTLQQLSISNE 380 (407)
Q Consensus 350 ~~i~~Leeq~~dLm~~l~~~~~~~~~~~~~e 380 (407)
+.-.|+.-|.+.|-.+|..=+-.+..+..+|
T Consensus 149 KYFvDINiQN~KLEsLLqsMElAq~g~~rde 179 (305)
T PF15290_consen 149 KYFVDINIQNKKLESLLQSMELAQSGSLRDE 179 (305)
T ss_pred HHHhhhhhhHhHHHHHHHHHHHHHhcccccc
Confidence 3445788888888888876554544433333
No 219
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=69.01 E-value=1.4 Score=43.30 Aligned_cols=46 Identities=26% Similarity=0.639 Sum_probs=34.1
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhcccccc--CCCCCCcccccC
Q 015426 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWT--DSSCPVCRYCQQ 141 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~--~~~CP~Cr~~~~ 141 (407)
+...||||+..-.. ..+...-|-.||..|+.... ...||+--++..
T Consensus 299 ~~~~CpvClk~r~N---ptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 299 DREVCPVCLKKRQN---PTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPAS 346 (357)
T ss_pred ccccChhHHhccCC---CceEEecceEEeHHHHHHHHHhcCCCCccCCcch
Confidence 45579999988764 12445568999999998874 388999877543
No 220
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=68.87 E-value=74 Score=27.24 Aligned_cols=16 Identities=0% Similarity=0.165 Sum_probs=5.9
Q ss_pred HHHHHHHhHHHHHHHH
Q 015426 319 LNENLLKNQEMWKAKI 334 (407)
Q Consensus 319 ln~~l~~~~~~l~~kl 334 (407)
+++...++...++..+
T Consensus 83 i~~~i~~eV~~v~~dv 98 (126)
T PF07889_consen 83 ISKQIKDEVTEVREDV 98 (126)
T ss_pred HHHHHHHHHHHHHhhH
Confidence 3333333333333333
No 221
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=68.59 E-value=2.2e+02 Score=32.65 Aligned_cols=38 Identities=16% Similarity=0.290 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 015426 294 AIAQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWK 331 (407)
Q Consensus 294 ~~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~ 331 (407)
.++.+.+.|+.++.++.+.+..++++.+.|...++.+.
T Consensus 412 nLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~ 449 (1195)
T KOG4643|consen 412 NLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLL 449 (1195)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666776766666666666666666665544444
No 222
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.
Probab=68.42 E-value=1.2 Score=39.30 Aligned_cols=75 Identities=23% Similarity=0.336 Sum_probs=41.1
Q ss_pred ceeecccC--CCcccccccCccccc-c--CCccccccccccCCceeEe-----ecCceeEEeccCC---cchhhhhhhcc
Q 015426 147 ICFVCQTS--ENLWMCVICGFVGCG-R--YKGGHAIIHWKETEHCYSL-----ELETQRVWDYAGD---NYVHRLIQSKT 213 (407)
Q Consensus 147 ~C~~C~~~--~~l~~Cl~Cg~~~Cg-r--~~~~Ha~~H~~~t~H~~~~-----~l~~~~v~cy~cd---~~vhrl~~~~~ 213 (407)
.|..|+.. ..+-.|++|+...|. + ..+.|...|...+.|.-.. .+.+..+-||.|. .|+--.+..+.
T Consensus 2 aC~YCG~~~p~~vv~C~~c~kWFCNg~~~~s~SHIv~HLv~srh~ev~LH~~s~lgdt~leCy~Cg~~NvF~LGFipak~ 81 (152)
T PF09416_consen 2 ACAYCGIHDPSCVVKCNTCNKWFCNGRGNTSGSHIVNHLVRSRHKEVSLHPDSPLGDTVLECYNCGSRNVFLLGFIPAKS 81 (152)
T ss_dssp S-TTT----CCCEEEETTTTEEEES--TTSSS-HHHHHHHHHT---EEE-TTSTT-S-B---TTT----TTTEEEEEETT
T ss_pred CccccCCCCcccEeEcCCCCcEeecCCCCCcccHHHHHHHHccCCceeeCCCCCCCCcEEEEEecCCCceeeEEEEEecc
Confidence 47788854 466779999999994 2 2478888888877776432 2335779999994 34444566777
Q ss_pred cCceeeec
Q 015426 214 DGKLVELN 221 (407)
Q Consensus 214 dgkl~e~~ 221 (407)
|.-++-+-
T Consensus 82 d~vvvllC 89 (152)
T PF09416_consen 82 DSVVVLLC 89 (152)
T ss_dssp SCEEEEEE
T ss_pred CCeEEEEe
Confidence 76555543
No 223
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=68.19 E-value=56 Score=25.55 Aligned_cols=39 Identities=15% Similarity=0.403 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015426 302 MQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEER 340 (407)
Q Consensus 302 l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~ 340 (407)
|.+..+.+...+..|..-|..|...+..|+.++..+-.+
T Consensus 37 L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGk 75 (79)
T PRK15422 37 LSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 75 (79)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333344445556777778888888888877776544
No 224
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.91 E-value=1e+02 Score=28.44 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHhHhHHHHhh
Q 015426 349 DDKIQDSEAQLRDLMAYLEAEKTLQQ 374 (407)
Q Consensus 349 ~~~i~~Leeq~~dLm~~l~~~~~~~~ 374 (407)
-.+|++|+.++.|||-- ..+|++
T Consensus 125 Id~IedlQDem~Dlmd~---a~EiQE 147 (218)
T KOG1655|consen 125 IDKIEDLQDEMEDLMDQ---ADEIQE 147 (218)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHH
Confidence 35788888888777654 444544
No 225
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=67.81 E-value=1.1e+02 Score=28.93 Aligned_cols=14 Identities=14% Similarity=0.404 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 015426 351 KIQDSEAQLRDLMA 364 (407)
Q Consensus 351 ~i~~Leeq~~dLm~ 364 (407)
.+.+|...+.++..
T Consensus 176 ~~~~l~~~le~~~~ 189 (247)
T PF06705_consen 176 KLSELRSELEEVKR 189 (247)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 226
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=67.59 E-value=2.5e+02 Score=32.90 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=16.7
Q ss_pred hhHHhHhhHH----HHHhhheeEEEeeCCCCCe
Q 015426 3 YADFCQFCAS----FIQHILEMRIVRTDGMDDQ 31 (407)
Q Consensus 3 ~~d~~~f~~~----~~~~i~~~r~ir~~~~~~~ 31 (407)
|.|+-+|-.. .++.|+.|..|..|.-|+.
T Consensus 173 pE~~ArFY~aEiVlAldslH~mgyVHRDiKPDN 205 (1317)
T KOG0612|consen 173 PEDWARFYTAEIVLALDSLHSMGYVHRDIKPDN 205 (1317)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccceeccCCcce
Confidence 4444454332 2467777777766766654
No 227
>PRK04023 DNA polymerase II large subunit; Validated
Probab=67.39 E-value=5.4 Score=45.00 Aligned_cols=56 Identities=20% Similarity=0.256 Sum_probs=40.4
Q ss_pred ceeeecCCCccchhccccccCCCCCCcccccCCCCccceeecccCCCcccccccCccc
Q 015426 110 GILTTICNHSFHCSCISKWTDSSCPVCRYCQQQPEKSICFVCQTSENLWMCVICGFVG 167 (407)
Q Consensus 110 ~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~~~~~~~C~~C~~~~~l~~Cl~Cg~~~ 167 (407)
+.+...=+..||.+|-.......||.|-.. ......|..|+...+...|..||...
T Consensus 618 g~~eVEVg~RfCpsCG~~t~~frCP~CG~~--Te~i~fCP~CG~~~~~y~CPKCG~El 673 (1121)
T PRK04023 618 GTIEVEIGRRKCPSCGKETFYRRCPFCGTH--TEPVYRCPRCGIEVEEDECEKCGREP 673 (1121)
T ss_pred CceeecccCccCCCCCCcCCcccCCCCCCC--CCcceeCccccCcCCCCcCCCCCCCC
Confidence 445566667788888766555789999765 34456888888887777788888654
No 228
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=67.22 E-value=2.2e+02 Score=32.01 Aligned_cols=12 Identities=8% Similarity=0.094 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHH
Q 015426 271 YYETLLQEAKEE 282 (407)
Q Consensus 271 ~~E~~l~~l~~~ 282 (407)
-++..|.+++++
T Consensus 512 ~~~~li~~L~~~ 523 (771)
T TIGR01069 512 EINVLIEKLSAL 523 (771)
T ss_pred HHHHHHHHHHHH
Confidence 355556655543
No 229
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.14 E-value=4 Score=31.17 Aligned_cols=47 Identities=21% Similarity=0.484 Sum_probs=32.7
Q ss_pred CCcccccccccccCCCceeeecCCCccchhccccccCCCCCCccccc
Q 015426 94 QPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQ 140 (407)
Q Consensus 94 ~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~ 140 (407)
-|.|--|--.+..+.+......=.++||.+|.....+..||.|--.+
T Consensus 5 RPnCECCDrDLpp~s~dA~ICtfEcTFCadCae~~l~g~CPnCGGel 51 (84)
T COG3813 5 RPNCECCDRDLPPDSTDARICTFECTFCADCAENRLHGLCPNCGGEL 51 (84)
T ss_pred cCCCcccCCCCCCCCCceeEEEEeeehhHhHHHHhhcCcCCCCCchh
Confidence 36777777777543333333333479999999988889999997554
No 230
>PHA00626 hypothetical protein
Probab=66.83 E-value=4 Score=29.64 Aligned_cols=32 Identities=22% Similarity=0.488 Sum_probs=24.9
Q ss_pred CCCCcccccCCCCccceeecccCCCcccccccCccc
Q 015426 132 SCPVCRYCQQQPEKSICFVCQTSENLWMCVICGFVG 167 (407)
Q Consensus 132 ~CP~Cr~~~~~~~~~~C~~C~~~~~l~~Cl~Cg~~~ 167 (407)
.||-|-.. ....|..|..+.+.+.|..||+..
T Consensus 2 ~CP~CGS~----~Ivrcg~cr~~snrYkCkdCGY~f 33 (59)
T PHA00626 2 SCPKCGSG----NIAKEKTMRGWSDDYVCCDCGYND 33 (59)
T ss_pred CCCCCCCc----eeeeeceecccCcceEcCCCCCee
Confidence 58888763 235788888889999999999664
No 231
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=66.75 E-value=44 Score=25.27 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=14.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHhHh
Q 015426 344 ALRAKDDKIQDSEAQLRDLMAYLEA 368 (407)
Q Consensus 344 ~~~~~~~~i~~Leeq~~dLm~~l~~ 368 (407)
++..++.+|..|+.+++.|...|..
T Consensus 26 ~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 26 VVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555677777777777666554
No 232
>PRK02119 hypothetical protein; Provisional
Probab=66.64 E-value=47 Score=25.51 Aligned_cols=24 Identities=29% Similarity=0.272 Sum_probs=14.8
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHhH
Q 015426 344 ALRAKDDKIQDSEAQLRDLMAYLE 367 (407)
Q Consensus 344 ~~~~~~~~i~~Leeq~~dLm~~l~ 367 (407)
++..++++|..|+.|++.|...+.
T Consensus 31 ~v~~Qq~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 31 ALIEQQFVIDKMQVQLRYMANKLK 54 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455567777777777755443
No 233
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.53 E-value=56 Score=24.92 Aligned_cols=31 Identities=19% Similarity=0.419 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015426 309 CVREKKFLDDLNENLLKNQEMWKAKISEIEE 339 (407)
Q Consensus 309 ~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~ 339 (407)
+...+.+|+.-|+.|...+..|++++..+-.
T Consensus 44 ~q~~reaL~~eneqlk~e~~~WQerlrsLLG 74 (79)
T COG3074 44 AQHQREALERENEQLKEEQNGWQERLRALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444555555666666666665555443
No 234
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=66.46 E-value=4.6 Score=29.36 Aligned_cols=47 Identities=21% Similarity=0.502 Sum_probs=32.2
Q ss_pred CCcccccccccccCCCceeeecCCCccchhccccccCCCCCCccccc
Q 015426 94 QPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQ 140 (407)
Q Consensus 94 ~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~ 140 (407)
-|.|-.|-..+..+......-+=..+||.+|........||-|.-.+
T Consensus 5 rpnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~~~CPNCgGel 51 (57)
T PF06906_consen 5 RPNCECCDKDLPPDSPEAYICSFECTFCADCAETMLNGVCPNCGGEL 51 (57)
T ss_pred CCCccccCCCCCCCCCcceEEeEeCcccHHHHHHHhcCcCcCCCCcc
Confidence 47788888887654312222222258999999998889999997654
No 235
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=66.31 E-value=1.2e+02 Score=28.62 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015426 298 KLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISE 336 (407)
Q Consensus 298 ~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~ 336 (407)
++..++.++++++.|..-|.++.+.|......|+.+..+
T Consensus 164 e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~E 202 (290)
T COG4026 164 EYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDE 202 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 333444444444444443333333333333333333333
No 236
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=66.26 E-value=5.6 Score=40.12 Aligned_cols=58 Identities=28% Similarity=0.398 Sum_probs=46.8
Q ss_pred CccceeecccCCCcccccccCccccccCCccccccccccCCceeEeecCc-eeEEeccC
Q 015426 144 EKSICFVCQTSENLWMCVICGFVGCGRYKGGHAIIHWKETEHCYSLELET-QRVWDYAG 201 (407)
Q Consensus 144 ~~~~C~~C~~~~~l~~Cl~Cg~~~Cgr~~~~Ha~~H~~~t~H~~~~~l~~-~~v~cy~c 201 (407)
...+|..--..-+.+-|+.||...-||..+.||+.|-.+.+|..-..+.+ ...++..-
T Consensus 28 ~ek~c~vslsnLnvyAclvcg~y~qgr~~kS~A~~h~l~~ghhvf~nl~telkfyvlpe 86 (442)
T KOG2026|consen 28 FEKPCSVSLSNLNVYACLVCGKYFQGRGEKSHAYTHSLEEGHHVFLNLSTELKFYVLPE 86 (442)
T ss_pred CCCCCcccccccceeeeeeeCchhhCcCccccchhccccccccceeccccceeEEecch
Confidence 34556555556677889999999999999999999999999999899888 66665553
No 237
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=66.24 E-value=3.6 Score=30.26 Aligned_cols=9 Identities=33% Similarity=1.331 Sum_probs=5.0
Q ss_pred CcccccccC
Q 015426 156 NLWMCVICG 164 (407)
Q Consensus 156 ~l~~Cl~Cg 164 (407)
.-|+||.|.
T Consensus 48 ~eWLCLnCQ 56 (61)
T PF05715_consen 48 KEWLCLNCQ 56 (61)
T ss_pred ceeeeecch
Confidence 346666654
No 238
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=66.00 E-value=1.4e+02 Score=29.47 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHH-HhHhHHHHhhh
Q 015426 350 DKIQDSEAQLRDLMA-YLEAEKTLQQL 375 (407)
Q Consensus 350 ~~i~~Leeq~~dLm~-~l~~~~~~~~~ 375 (407)
.++.+|++.-.+++. +-++|+.++..
T Consensus 276 aEL~elqdkY~E~~~mL~EaQEElk~l 302 (306)
T PF04849_consen 276 AELQELQDKYAECMAMLHEAQEELKTL 302 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356666666665443 34566666554
No 239
>PRK14873 primosome assembly protein PriA; Provisional
Probab=65.87 E-value=3.5 Score=45.14 Aligned_cols=45 Identities=20% Similarity=0.413 Sum_probs=34.5
Q ss_pred ccchhccccccCCCCCCcccccC---CCCccceeecccCCCcccccccCcc
Q 015426 119 SFHCSCISKWTDSSCPVCRYCQQ---QPEKSICFVCQTSENLWMCVICGFV 166 (407)
Q Consensus 119 ~F~~~Cl~~w~~~~CP~Cr~~~~---~~~~~~C~~C~~~~~l~~Cl~Cg~~ 166 (407)
.+|.+|-.. ..||.|-.... ......|..|+.....|.|..||..
T Consensus 384 l~C~~Cg~~---~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~ 431 (665)
T PRK14873 384 LACARCRTP---ARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSD 431 (665)
T ss_pred eEhhhCcCe---eECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCC
Confidence 477778533 68999976654 3456889999998788999999865
No 240
>PRK04325 hypothetical protein; Provisional
Probab=65.67 E-value=50 Score=25.43 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=16.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhHh
Q 015426 341 EKMALRAKDDKIQDSEAQLRDLMAYLEA 368 (407)
Q Consensus 341 ~~~~~~~~~~~i~~Leeq~~dLm~~l~~ 368 (407)
+..++..++++|..|+.|++.|..-+..
T Consensus 28 LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 28 LNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445556777788777777554433
No 241
>PHA02148 hypothetical protein
Probab=65.58 E-value=11 Score=30.11 Aligned_cols=64 Identities=19% Similarity=0.240 Sum_probs=38.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhHHHHhhhccccCCCCcEE
Q 015426 319 LNENLLKNQEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDLMAYLEAEKTLQQLSISNEIKDGTV 386 (407)
Q Consensus 319 ln~~l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dLm~~l~~~~~~~~~~~~~ei~~G~v 386 (407)
+-+.+.+....-+.+++++..+-+..++..+.-|+-+-+.-.-.|.-|.+++.+ .++.+++|.+
T Consensus 38 ~FK~iE~RIA~D~~~L~~~A~~R~NEL~~HE~Air~~M~~HS~~M~~LS~~~~L----iSDS~K~~~~ 101 (110)
T PHA02148 38 LFKKIEERIAHDQTRLEELAKSRENELRRHEAAIRLAMDSHSIKMDDLSLQEAL----ISDSLKGGKY 101 (110)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHH
Confidence 334444444444455555555555556666666666777777778888888777 3445666654
No 242
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=65.50 E-value=3.1 Score=28.56 Aligned_cols=37 Identities=35% Similarity=0.810 Sum_probs=19.4
Q ss_pred ccccccccccCCCcee--eecCCCccchhccccccC----CCCCCc
Q 015426 97 CPVCLERLDQDTSGIL--TTICNHSFHCSCISKWTD----SSCPVC 136 (407)
Q Consensus 97 C~iCle~~~~~~~~~~--~~~C~H~F~~~Cl~~w~~----~~CP~C 136 (407)
|.+|.+.... |.. ...|+-.+|..|+..+.. ..||.|
T Consensus 1 C~~C~~iv~~---G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQ---GQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SS---SEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHee---eccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 6778777664 333 335888999999988743 369987
No 243
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.46 E-value=1.5e+02 Score=29.63 Aligned_cols=15 Identities=40% Similarity=0.598 Sum_probs=6.9
Q ss_pred HHHHhHHHHHHHHHH
Q 015426 322 NLLKNQEMWKAKISE 336 (407)
Q Consensus 322 ~l~~~~~~l~~kl~~ 336 (407)
.|.+|.+.|..+.++
T Consensus 264 ~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 264 SLQKNIDILKSKVRE 278 (365)
T ss_pred HHHhhhHHHHHHHHH
Confidence 444444444444444
No 244
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=65.42 E-value=1.2e+02 Score=32.66 Aligned_cols=81 Identities=15% Similarity=0.285 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHh
Q 015426 259 ELLAAQLENQKIYYETLLQEAK--EETEKIISEAVKKAIA------QKLQKMQAKLDRCVRE----KKFLDDLNENLLKN 326 (407)
Q Consensus 259 ~lL~~qle~qr~~~E~~l~~l~--~~~~~~l~~~~~~~~~------~~l~~l~~~l~~~~~e----~~~l~eln~~l~~~ 326 (407)
.-+...++..+++|..++.+|. .+. +.+.+.++.... ..+.+...+++++.++ ++.++.+.+.|...
T Consensus 167 ~~~~~~~k~~~~~w~~~~~~Lp~~~~~-~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~ 245 (555)
T TIGR03545 167 EEIEKSLKAMQQKWKKRKKDLPNKQDL-EEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQND 245 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467778888888888777773 221 111111111100 1222333344444433 33355666666666
Q ss_pred HHHHHHHHHHHHHH
Q 015426 327 QEMWKAKISEIEER 340 (407)
Q Consensus 327 ~~~l~~kl~~~~~~ 340 (407)
.+.++.++.++++.
T Consensus 246 ~~~~~~~~~~lk~a 259 (555)
T TIGR03545 246 KKQLKADLAELKKA 259 (555)
T ss_pred HHHHHHHHHHHHhc
Confidence 66777666666543
No 245
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=65.33 E-value=2.3e+02 Score=32.44 Aligned_cols=25 Identities=8% Similarity=0.226 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHhhh
Q 015426 351 KIQDSEAQLRDLMAYLEAEKTLQQL 375 (407)
Q Consensus 351 ~i~~Leeq~~dLm~~l~~~~~~~~~ 375 (407)
+-.+..|.-++...+.+..+.-+++
T Consensus 873 qr~e~~e~tk~~~~~~~~~e~~k~s 897 (1018)
T KOG2002|consen 873 QREEYRERTKEILKLPEIEEEKKKS 897 (1018)
T ss_pred HHHHHHHHHHHHHhccchHhhhhhc
Confidence 3344445555555555555555444
No 246
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=65.13 E-value=1e+02 Score=31.90 Aligned_cols=6 Identities=0% Similarity=0.146 Sum_probs=2.1
Q ss_pred HHHHHH
Q 015426 304 AKLDRC 309 (407)
Q Consensus 304 ~~l~~~ 309 (407)
..+.++
T Consensus 73 ~~i~~~ 78 (420)
T COG4942 73 TEIASL 78 (420)
T ss_pred HHHHHH
Confidence 333333
No 247
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=65.10 E-value=1.7e+02 Score=30.07 Aligned_cols=13 Identities=31% Similarity=0.146 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 015426 261 LAAQLENQKIYYE 273 (407)
Q Consensus 261 L~~qle~qr~~~E 273 (407)
+.+|+..+|+.++
T Consensus 32 ~~aq~~~~~a~~~ 44 (459)
T KOG0288|consen 32 LSAQLVILRAESR 44 (459)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444333
No 248
>PRK11546 zraP zinc resistance protein; Provisional
Probab=64.99 E-value=69 Score=28.05 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=15.5
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhHhH
Q 015426 345 LRAKDDKIQDSEAQLRDLMAYLEAE 369 (407)
Q Consensus 345 ~~~~~~~i~~Leeq~~dLm~~l~~~ 369 (407)
+.+..++|.+|+.++.++.+-++.+
T Consensus 91 I~aL~kEI~~Lr~kL~e~r~~~~~~ 115 (143)
T PRK11546 91 INAVAKEMENLRQSLDELRVKRDIA 115 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445557777777777766544443
No 249
>PRK02793 phi X174 lysis protein; Provisional
Probab=64.72 E-value=53 Score=25.15 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=16.3
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhHh
Q 015426 343 MALRAKDDKIQDSEAQLRDLMAYLEA 368 (407)
Q Consensus 343 ~~~~~~~~~i~~Leeq~~dLm~~l~~ 368 (407)
.++..++++|..|+.+++.|...|..
T Consensus 29 ~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 29 VTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556777788888777655433
No 250
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=64.68 E-value=1.3e+02 Score=28.55 Aligned_cols=28 Identities=18% Similarity=0.420 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015426 297 QKLQKMQAKLDRCVREKKFLDDLNENLL 324 (407)
Q Consensus 297 ~~l~~l~~~l~~~~~e~~~l~eln~~l~ 324 (407)
.++.++...+.++.+|-..|..-|+.|.
T Consensus 90 aRm~eme~~i~dL~een~~L~~en~~Lr 117 (292)
T KOG4005|consen 90 ARMEEMEYEIKDLTEENEILQNENDSLR 117 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555554444444444
No 251
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=64.64 E-value=81 Score=26.15 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=14.7
Q ss_pred HhhhHHHHHHHHHHHHHHHH
Q 015426 346 RAKDDKIQDSEAQLRDLMAY 365 (407)
Q Consensus 346 ~~~~~~i~~Leeq~~dLm~~ 365 (407)
.....+|..|++|++||-.-
T Consensus 86 ~~l~~rvd~Lerqv~~Lenk 105 (108)
T COG3937 86 DELTERVDALERQVADLENK 105 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34456888899999998654
No 252
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=63.83 E-value=1.5e+02 Score=28.85 Aligned_cols=56 Identities=14% Similarity=0.217 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhHHHH
Q 015426 313 KKFLDDLNENLLKNQEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDLMAYLEAEKTL 372 (407)
Q Consensus 313 ~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dLm~~l~~~~~~ 372 (407)
...++.-.+.|....+.-..++.-++..+... .++|.-|+..+..+..-|+-.+..
T Consensus 76 c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~----Kkqie~Leqelkr~KsELErsQ~~ 131 (307)
T PF10481_consen 76 CENLEKTRQKLSHDLQVKESQVNFLEGQLNSC----KKQIEKLEQELKRCKSELERSQQA 131 (307)
T ss_pred HHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333344434444444444444444332 236677777777777777755544
No 253
>PHA03161 hypothetical protein; Provisional
Probab=63.29 E-value=1.1e+02 Score=27.04 Aligned_cols=9 Identities=11% Similarity=0.390 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 015426 353 QDSEAQLRD 361 (407)
Q Consensus 353 ~~Leeq~~d 361 (407)
.+|.+.+.|
T Consensus 92 E~L~drv~e 100 (150)
T PHA03161 92 EDLQDKILE 100 (150)
T ss_pred HHHHHHHHH
Confidence 334444433
No 254
>PF12773 DZR: Double zinc ribbon
Probab=63.07 E-value=6.2 Score=27.57 Aligned_cols=33 Identities=33% Similarity=0.703 Sum_probs=14.1
Q ss_pred CCCCcccccC--CCCccceeecccCC--CcccccccC
Q 015426 132 SCPVCRYCQQ--QPEKSICFVCQTSE--NLWMCVICG 164 (407)
Q Consensus 132 ~CP~Cr~~~~--~~~~~~C~~C~~~~--~l~~Cl~Cg 164 (407)
.||.|...+. ......|..|+... +..+|..||
T Consensus 14 fC~~CG~~l~~~~~~~~~C~~Cg~~~~~~~~fC~~CG 50 (50)
T PF12773_consen 14 FCPHCGTPLPPPDQSKKICPNCGAENPPNAKFCPNCG 50 (50)
T ss_pred CChhhcCChhhccCCCCCCcCCcCCCcCCcCccCccc
Confidence 4444444443 22334455554422 334455554
No 255
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=62.39 E-value=2.5e+02 Score=30.96 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhHhHHHH
Q 015426 354 DSEAQLRDLMAYLEAEKTL 372 (407)
Q Consensus 354 ~Leeq~~dLm~~l~~~~~~ 372 (407)
-+...++|||..|++.+.-
T Consensus 609 ~~R~Ei~~LqrRlqaaE~R 627 (961)
T KOG4673|consen 609 MFRGEIEDLQRRLQAAERR 627 (961)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3667777777777765543
No 256
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=62.28 E-value=1.4e+02 Score=29.28 Aligned_cols=45 Identities=9% Similarity=0.034 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhHHHHhh
Q 015426 330 WKAKISEIEEREKMALRAKDDKIQDSEAQLRDLMAYLEAEKTLQQ 374 (407)
Q Consensus 330 l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dLm~~l~~~~~~~~ 374 (407)
+.++..++...++....+..+--.+.+++-+.|---++.++++++
T Consensus 278 l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~Kq 322 (384)
T KOG0972|consen 278 LMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQ 322 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444443333333333444444444444444444444
No 257
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=62.18 E-value=3.5 Score=44.12 Aligned_cols=46 Identities=28% Similarity=0.832 Sum_probs=29.3
Q ss_pred CCCcccccccccccCCCc--eeeecCCCccchhccccccC-------CCCCCcccc
Q 015426 93 EQPSCPVCLERLDQDTSG--ILTTICNHSFHCSCISKWTD-------SSCPVCRYC 139 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~--~~~~~C~H~F~~~Cl~~w~~-------~~CP~Cr~~ 139 (407)
-...|++|--.=. ...+ +..-.|+-.+|..|+..|.. +.||-||.+
T Consensus 17 ~~~mc~l~~s~G~-~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvC 71 (694)
T KOG4443|consen 17 VCLMCPLCGSSGK-GRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVC 71 (694)
T ss_pred hhhhhhhhccccc-cccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceee
Confidence 3456666654322 1212 22346888899999998843 679999983
No 258
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=62.14 E-value=1e+02 Score=26.41 Aligned_cols=22 Identities=9% Similarity=0.209 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 015426 261 LAAQLENQKIYYETLLQEAKEE 282 (407)
Q Consensus 261 L~~qle~qr~~~E~~l~~l~~~ 282 (407)
+.+.|...|+++..+|+.+..+
T Consensus 55 vs~~l~~tKkhLsqRId~vd~k 76 (126)
T PF07889_consen 55 VSESLSSTKKHLSQRIDRVDDK 76 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444455555555544433
No 259
>PRK00295 hypothetical protein; Provisional
Probab=61.67 E-value=68 Score=24.25 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=15.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhHh
Q 015426 343 MALRAKDDKIQDSEAQLRDLMAYLEA 368 (407)
Q Consensus 343 ~~~~~~~~~i~~Leeq~~dLm~~l~~ 368 (407)
.++..++++|..|+.|++.|..-+..
T Consensus 26 ~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 26 DVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555677777777777555444
No 260
>PRK11020 hypothetical protein; Provisional
Probab=61.61 E-value=81 Score=26.43 Aligned_cols=19 Identities=11% Similarity=0.288 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 015426 297 QKLQKMQAKLDRCVREKKF 315 (407)
Q Consensus 297 ~~l~~l~~~l~~~~~e~~~ 315 (407)
++++.|+++|+.+...+..
T Consensus 5 ~Eiq~L~drLD~~~~Klaa 23 (118)
T PRK11020 5 NEIKRLSDRLDAIRHKLAA 23 (118)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666666666554444
No 261
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=61.55 E-value=1e+02 Score=26.27 Aligned_cols=41 Identities=22% Similarity=0.239 Sum_probs=22.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 015426 323 LLKNQEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDLM 363 (407)
Q Consensus 323 l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dLm 363 (407)
|....+.....+...+..........+..|.+++..+.||.
T Consensus 78 l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 78 LKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444555555555555555666666666666664
No 262
>PF14282 FlxA: FlxA-like protein
Probab=61.46 E-value=32 Score=28.40 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=12.2
Q ss_pred HhhhHHHHHHHHHHHHHHHHh
Q 015426 346 RAKDDKIQDSEAQLRDLMAYL 366 (407)
Q Consensus 346 ~~~~~~i~~Leeq~~dLm~~l 366 (407)
...+.+|..|+.||..|..-.
T Consensus 54 q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 54 QLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344456666777776655443
No 263
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=61.34 E-value=6.7 Score=42.74 Aligned_cols=49 Identities=24% Similarity=0.501 Sum_probs=34.5
Q ss_pred cccccccccccCCCceeeecCCCccchhccccccCCCCCCcccccCCCCccceeecccCC
Q 015426 96 SCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQQQPEKSICFVCQTSE 155 (407)
Q Consensus 96 ~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~~~~~~~C~~C~~~~ 155 (407)
.||-|-... +-++.||..|........||.|.+.. ++....|..|+..-
T Consensus 3 ~Cp~Cg~~n----------~~~akFC~~CG~~l~~~~Cp~CG~~~-~~~~~fC~~CG~~~ 51 (645)
T PRK14559 3 ICPQCQFEN----------PNNNRFCQKCGTSLTHKPCPQCGTEV-PVDEAHCPNCGAET 51 (645)
T ss_pred cCCCCCCcC----------CCCCccccccCCCCCCCcCCCCCCCC-CcccccccccCCcc
Confidence 577776553 33557999997776557899998876 46667888887743
No 264
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=61.21 E-value=85 Score=32.87 Aligned_cols=8 Identities=25% Similarity=0.252 Sum_probs=3.6
Q ss_pred CcEEeecC
Q 015426 383 DGTVLPMS 390 (407)
Q Consensus 383 ~G~v~~~~ 390 (407)
+|.+++.|
T Consensus 171 ~~~~Wv~P 178 (472)
T TIGR03752 171 GGVVWVEP 178 (472)
T ss_pred CceEeecc
Confidence 44445443
No 265
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=61.13 E-value=78 Score=24.78 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 015426 327 QEMWKAKISEIEEREKMALRAKDDKIQDSEAQL 359 (407)
Q Consensus 327 ~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~ 359 (407)
.+.+++++-+++....+.....+++|..|..++
T Consensus 41 m~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eL 73 (79)
T PF08581_consen 41 MQQIRQKVYELEQAHRKMKQQYEEEIARLRREL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666555555555555555444
No 266
>PRK00736 hypothetical protein; Provisional
Probab=60.93 E-value=68 Score=24.24 Aligned_cols=26 Identities=12% Similarity=0.107 Sum_probs=15.8
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhHh
Q 015426 343 MALRAKDDKIQDSEAQLRDLMAYLEA 368 (407)
Q Consensus 343 ~~~~~~~~~i~~Leeq~~dLm~~l~~ 368 (407)
.++..++++|..|+.|++-|..-+..
T Consensus 26 ~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 26 DQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555677777777777665443
No 267
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=60.86 E-value=7.3 Score=27.56 Aligned_cols=44 Identities=27% Similarity=0.516 Sum_probs=33.5
Q ss_pred hhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015426 9 FCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 9 f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
++.+|- .|..+++.+.. +..+++.|.+.++|..-...+||..|.
T Consensus 4 ~f~~fG-~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~ 47 (56)
T PF13893_consen 4 LFSKFG-EVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFN 47 (56)
T ss_dssp HHTTTS--EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEET
T ss_pred HhCCcc-cEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 344442 57778887733 258999999999999999999999874
No 268
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=60.81 E-value=1.8e+02 Score=28.74 Aligned_cols=46 Identities=9% Similarity=0.168 Sum_probs=27.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 015426 320 NENLLKNQEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDLMAY 365 (407)
Q Consensus 320 n~~l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dLm~~ 365 (407)
...|.+..+.+..+.+.+.+......++.++.++.|+|.+.+++.-
T Consensus 354 E~elke~Ekel~~kf~~lkr~h~eEk~kle~~rr~Leee~~~f~~r 399 (406)
T KOG3859|consen 354 EAELKEAEKELHEKFDRLKRLHQEEKKKLEEKRKQLEEEVNAFQRR 399 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555666777788877776643
No 269
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=60.51 E-value=2.8e+02 Score=30.95 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHH---HHHHHhhhHHHHHHHHHHHHHHH
Q 015426 326 NQEMWKAKISEIEERE---KMALRAKDDKIQDSEAQLRDLMA 364 (407)
Q Consensus 326 ~~~~l~~kl~~~~~~~---~~~~~~~~~~i~~Leeq~~dLm~ 364 (407)
+.+.++-+++..+.+. .-.++..|++|+-|+|-.|.|-.
T Consensus 509 ~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~ 550 (861)
T PF15254_consen 509 NVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQN 550 (861)
T ss_pred HHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666543 34678888999999888888743
No 270
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=60.28 E-value=2.5e+02 Score=30.24 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015426 298 KLQKMQAKLDRCVREKKFLDDLNENLLK 325 (407)
Q Consensus 298 ~l~~l~~~l~~~~~e~~~l~eln~~l~~ 325 (407)
.++.+...++.+.++...+.+.-..|.+
T Consensus 380 ~l~~~~~~l~~ie~~q~~~~~~l~~L~~ 407 (560)
T PF06160_consen 380 ELEEIEEQLEEIEEEQEEINESLQSLRK 407 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333333333333333
No 271
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=60.24 E-value=3.5 Score=35.44 Aligned_cols=50 Identities=20% Similarity=0.441 Sum_probs=34.8
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhccccccC-----CCCCCcccccCC
Q 015426 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD-----SSCPVCRYCQQQ 142 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~-----~~CP~Cr~~~~~ 142 (407)
.+-.|.||.|.-.+..=--.--=||-+-|..|-...|. ..||+|+++|..
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 45689999988654210001235899999999776442 789999999863
No 272
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=60.20 E-value=2.7e+02 Score=30.75 Aligned_cols=24 Identities=21% Similarity=0.106 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 015426 259 ELLAAQLENQKIYYETLLQEAKEE 282 (407)
Q Consensus 259 ~lL~~qle~qr~~~E~~l~~l~~~ 282 (407)
..+..|+|.|-..|+..+...++.
T Consensus 815 ~k~~~q~Eq~~rrFeqE~~~kkr~ 838 (1187)
T KOG0579|consen 815 AKGIKQVEQQARRFEQEQTNKKRT 838 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhh
Confidence 345566777766777666555443
No 273
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=59.98 E-value=1.4e+02 Score=27.39 Aligned_cols=25 Identities=40% Similarity=0.448 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015426 258 NELLAAQLENQKIYYETLLQEAKEE 282 (407)
Q Consensus 258 ~~lL~~qle~qr~~~E~~l~~l~~~ 282 (407)
.++=.-+||.|+.+.|..|..-+.+
T Consensus 103 ~eirR~~LeAQka~~eR~ia~~~~r 127 (192)
T PF11180_consen 103 VEIRRAQLEAQKAQLERLIAESEAR 127 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455577788888777776655444
No 274
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=59.73 E-value=2e+02 Score=28.99 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 015426 299 LQKMQAKLDRCVREKK 314 (407)
Q Consensus 299 l~~l~~~l~~~~~e~~ 314 (407)
..++..+++++..++.
T Consensus 160 ~~~~~~qlE~~v~~K~ 175 (342)
T PF06632_consen 160 ANKLLKQLEKFVNAKE 175 (342)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555554443
No 275
>PRK11519 tyrosine kinase; Provisional
Probab=59.34 E-value=2.9e+02 Score=30.69 Aligned_cols=18 Identities=11% Similarity=0.213 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 015426 265 LENQKIYYETLLQEAKEE 282 (407)
Q Consensus 265 le~qr~~~E~~l~~l~~~ 282 (407)
.....+++++++.+++.+
T Consensus 265 a~~a~~fL~~ql~~l~~~ 282 (719)
T PRK11519 265 ASKSLAFLAQQLPEVRSR 282 (719)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555555555543
No 276
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=59.22 E-value=1.1e+02 Score=26.08 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 015426 332 AKISEIEEREKMALRAKDDKIQDSEAQLRDL 362 (407)
Q Consensus 332 ~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dL 362 (407)
...+.+..+.+..+...++.|.+.++.|..+
T Consensus 89 ~eYk~llk~y~~~~~~L~k~I~~~e~iI~~f 119 (126)
T PF09403_consen 89 DEYKELLKKYKDLLNKLDKEIAEQEQIIDNF 119 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444555555544443
No 277
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=58.97 E-value=84 Score=28.99 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhHhHHH
Q 015426 347 AKDDKIQDSEAQLRDLMAYLEAEKT 371 (407)
Q Consensus 347 ~~~~~i~~Leeq~~dLm~~l~~~~~ 371 (407)
...+.|..+++||.-|-.||..++.
T Consensus 164 ~v~~Dl~~ie~QV~~Le~~L~~k~~ 188 (195)
T PF12761_consen 164 SVREDLDTIEEQVDGLESHLSSKKQ 188 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345777888899999888876654
No 278
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=58.86 E-value=1.3e+02 Score=26.60 Aligned_cols=6 Identities=33% Similarity=0.528 Sum_probs=2.7
Q ss_pred HHHHhH
Q 015426 362 LMAYLE 367 (407)
Q Consensus 362 Lm~~l~ 367 (407)
||.+|+
T Consensus 102 v~allD 107 (155)
T PF06810_consen 102 VKALLD 107 (155)
T ss_pred HHHhcC
Confidence 444443
No 279
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=58.85 E-value=1.2e+02 Score=26.37 Aligned_cols=105 Identities=20% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 015426 252 AIVNEYNELLAAQLENQKIYYETLLQEAKEETEKIIS--EAVKKAIAQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEM 329 (407)
Q Consensus 252 ~~~~ey~~lL~~qle~qr~~~E~~l~~l~~~~~~~l~--~~~~~~~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~ 329 (407)
.+..+....+.-+.|+.++..+.+-.++..-+ ..+. ..--..++.....|.+.+.+....+..|...+..+..-++.
T Consensus 34 e~~q~~~e~~~~daEn~k~eie~L~~el~~lt-~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~ 112 (140)
T PF10473_consen 34 EMSQENKECLILDAENSKAEIETLEEELEELT-SELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQE 112 (140)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 015426 330 WKAKISEIEEREKMALRAKDDKIQDSEA 357 (407)
Q Consensus 330 l~~kl~~~~~~~~~~~~~~~~~i~~Lee 357 (407)
.......+.+.++.++.....+..+|.|
T Consensus 113 ~E~ek~q~~e~~~~~ve~L~~ql~~L~E 140 (140)
T PF10473_consen 113 KEQEKVQLKEESKSAVEMLQKQLKELNE 140 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcC
No 280
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=58.44 E-value=2.2e+02 Score=29.06 Aligned_cols=13 Identities=31% Similarity=0.560 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 015426 250 VEAIVNEYNELLA 262 (407)
Q Consensus 250 ~~~~~~ey~~lL~ 262 (407)
++++..|-.....
T Consensus 262 l~aileeL~eIk~ 274 (455)
T KOG3850|consen 262 LDAILEELREIKE 274 (455)
T ss_pred HHHHHHHHHHHHH
Confidence 4555554444433
No 281
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=58.35 E-value=1.8e+02 Score=32.28 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=11.5
Q ss_pred HHHHHHHH--hHHHHHHHHHHHHHHH
Q 015426 318 DLNENLLK--NQEMWKAKISEIEERE 341 (407)
Q Consensus 318 eln~~l~~--~~~~l~~kl~~~~~~~ 341 (407)
|+|+.|.. |.-.++++++.+.+..
T Consensus 519 Efnkkl~ea~n~p~lk~Kle~Lk~~~ 544 (762)
T PLN03229 519 EFNKRLSRAPNYLSLKYKLDMLNEFS 544 (762)
T ss_pred HHHHhhhcccccHHHHHHHHHHHHHH
Confidence 45555553 3334555555554443
No 282
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.35 E-value=3.4 Score=36.62 Aligned_cols=29 Identities=28% Similarity=0.602 Sum_probs=23.1
Q ss_pred CCCcccccccccccCCCceeeecCCCccch
Q 015426 93 EQPSCPVCLERLDQDTSGILTTICNHSFHC 122 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~ 122 (407)
+.-.|.||||.+.... .+..|||...||+
T Consensus 176 dkGECvICLEdL~~Gd-tIARLPCLCIYHK 204 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGD-TIARLPCLCIYHK 204 (205)
T ss_pred cCCcEEEEhhhccCCC-ceeccceEEEeec
Confidence 5568999999998543 4668899988885
No 283
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=58.22 E-value=3.5e+02 Score=31.33 Aligned_cols=9 Identities=44% Similarity=0.693 Sum_probs=3.7
Q ss_pred hhhhcccCc
Q 015426 208 LIQSKTDGK 216 (407)
Q Consensus 208 l~~~~~dgk 216 (407)
|||+.-.|+
T Consensus 350 LLQDSLGGk 358 (1041)
T KOG0243|consen 350 LLQDSLGGK 358 (1041)
T ss_pred HHHHHhCCC
Confidence 444443333
No 284
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=58.20 E-value=82 Score=24.09 Aligned_cols=55 Identities=18% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHhhhHHHHHHHHHHHHHHHHhH
Q 015426 313 KKFLDDLNENLLKNQEMWKAKISEIEERE---KMALRAKDDKIQDSEAQLRDLMAYLE 367 (407)
Q Consensus 313 ~~~l~eln~~l~~~~~~l~~kl~~~~~~~---~~~~~~~~~~i~~Leeq~~dLm~~l~ 367 (407)
+.+++.|.+...+.++.|......+...+ +.......++|..|..||..|-.-++
T Consensus 9 l~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~ 66 (70)
T PF04899_consen 9 LSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLE 66 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 285
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=58.15 E-value=1.7e+02 Score=27.62 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHH
Q 015426 327 QEMWKAKISEIEEREKM---ALRAKDDKIQDSEAQLRD 361 (407)
Q Consensus 327 ~~~l~~kl~~~~~~~~~---~~~~~~~~i~~Leeq~~d 361 (407)
+..|..++.+++.+... .+...+.+|..|+..+..
T Consensus 178 i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~ 215 (237)
T PF00261_consen 178 IRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEK 215 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444433322 234445566666655543
No 286
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=57.92 E-value=74 Score=23.82 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 015426 347 AKDDKIQDSEAQLRDLMAY 365 (407)
Q Consensus 347 ~~~~~i~~Leeq~~dLm~~ 365 (407)
-+...|.+||.-+.|||..
T Consensus 45 DM~~riDDLEKnIaDLm~q 63 (73)
T KOG4117|consen 45 DMSSRIDDLEKNIADLMTQ 63 (73)
T ss_pred hhhhhhHHHHHHHHHHHHH
Confidence 3445788999999999863
No 287
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=57.68 E-value=2e+02 Score=28.42 Aligned_cols=31 Identities=29% Similarity=0.466 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 015426 331 KAKISEIEEREKMALRAKDDKIQDSEAQLRDL 362 (407)
Q Consensus 331 ~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dL 362 (407)
..+..++ ++++........++.+|+++++..
T Consensus 136 ~eK~~el-Er~K~~~d~L~~e~~~Lre~L~~r 166 (302)
T PF09738_consen 136 REKIREL-ERQKRAHDSLREELDELREQLKQR 166 (302)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 333333434334444455555433
No 288
>PF14369 zf-RING_3: zinc-finger
Probab=57.68 E-value=4.2 Score=26.65 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=11.6
Q ss_pred eeEEeccCCcchhh
Q 015426 194 QRVWDYAGDNYVHR 207 (407)
Q Consensus 194 ~~v~cy~cd~~vhr 207 (407)
++.|||.|+..|.-
T Consensus 1 ~~ywCh~C~~~V~~ 14 (35)
T PF14369_consen 1 QRYWCHQCNRFVRI 14 (35)
T ss_pred CCEeCccCCCEeEe
Confidence 46899999998864
No 289
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=57.55 E-value=2.5e+02 Score=29.48 Aligned_cols=12 Identities=25% Similarity=0.653 Sum_probs=8.8
Q ss_pred eeEEeccCCcch
Q 015426 194 QRVWDYAGDNYV 205 (407)
Q Consensus 194 ~~v~cy~cd~~v 205 (407)
.-+|+|.|+.|-
T Consensus 231 k~lfdY~~~~Y~ 242 (622)
T COG5185 231 KLLFDYFTESYK 242 (622)
T ss_pred HHHHHHHHHHHH
Confidence 347888888883
No 290
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=57.53 E-value=2e+02 Score=28.46 Aligned_cols=12 Identities=8% Similarity=0.246 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 015426 351 KIQDSEAQLRDL 362 (407)
Q Consensus 351 ~i~~Leeq~~dL 362 (407)
++.+++++++++
T Consensus 247 ~k~e~~~~I~~a 258 (312)
T smart00787 247 KKSELNTEIAEA 258 (312)
T ss_pred HHHHHHHHHHHH
Confidence 333344444433
No 291
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=57.53 E-value=58 Score=28.93 Aligned_cols=20 Identities=10% Similarity=0.094 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHhHhHH
Q 015426 351 KIQDSEAQLRDLMAYLEAEK 370 (407)
Q Consensus 351 ~i~~Leeq~~dLm~~l~~~~ 370 (407)
++..++.....+......+.
T Consensus 146 e~~~~~~~~~~~~k~w~kRK 165 (169)
T PF07106_consen 146 EKEKLEKEYKKWRKEWKKRK 165 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444433333
No 292
>PHA02562 46 endonuclease subunit; Provisional
Probab=57.23 E-value=2.6e+02 Score=29.56 Aligned_cols=6 Identities=33% Similarity=1.148 Sum_probs=2.8
Q ss_pred CCCCCC
Q 015426 230 NCGSCD 235 (407)
Q Consensus 230 ~~~~~~ 235 (407)
.|..|.
T Consensus 286 ~Cp~C~ 291 (562)
T PHA02562 286 VCPTCT 291 (562)
T ss_pred CCCCCC
Confidence 444443
No 293
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=57.15 E-value=7 Score=41.37 Aligned_cols=45 Identities=27% Similarity=0.450 Sum_probs=33.8
Q ss_pred ccchhccccccCCCCCCcccccC---CCCccceeecccCCC-cccccccCcc
Q 015426 119 SFHCSCISKWTDSSCPVCRYCQQ---QPEKSICFVCQTSEN-LWMCVICGFV 166 (407)
Q Consensus 119 ~F~~~Cl~~w~~~~CP~Cr~~~~---~~~~~~C~~C~~~~~-l~~Cl~Cg~~ 166 (407)
..|..|-.. ..||.|-.... ......|..|+.... .|.|..||..
T Consensus 214 ~~C~~Cg~~---~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~ 262 (505)
T TIGR00595 214 LLCRSCGYI---LCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSE 262 (505)
T ss_pred eEhhhCcCc---cCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCC
Confidence 467778533 68999986553 456789999998765 6899999864
No 294
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=57.01 E-value=3.1e+02 Score=30.42 Aligned_cols=12 Identities=17% Similarity=0.354 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 015426 270 IYYETLLQEAKE 281 (407)
Q Consensus 270 ~~~E~~l~~l~~ 281 (407)
+++++++.+++.
T Consensus 270 ~fL~~qL~~l~~ 281 (726)
T PRK09841 270 EFLQRQLPEVRS 281 (726)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 295
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.78 E-value=4.4 Score=44.89 Aligned_cols=36 Identities=28% Similarity=0.495 Sum_probs=28.1
Q ss_pred CCCCCcccccccccccCCCceeeecCCCccchhccccc
Q 015426 91 STEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKW 128 (407)
Q Consensus 91 ~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w 128 (407)
.....+|.+|.-.+.. ..-.+-||+|.||.+|+...
T Consensus 814 ~ep~d~C~~C~~~ll~--~pF~vf~CgH~FH~~Cl~~~ 849 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLI--KPFYVFPCGHCFHRDCLIRH 849 (911)
T ss_pred ecCccchHHhcchhhc--CcceeeeccchHHHHHHHHH
Confidence 3467899999888764 23568899999999998653
No 296
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=56.65 E-value=2.3e+02 Score=31.80 Aligned_cols=66 Identities=20% Similarity=0.201 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHhhhHHHHHHHHHHHH
Q 015426 296 AQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREK---MALRAKDDKIQDSEAQLRD 361 (407)
Q Consensus 296 ~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~---~~~~~~~~~i~~Leeq~~d 361 (407)
..+++.++..+..+..++..+++.+..+....+......+.++.++. ........+|..|++++.+
T Consensus 623 ~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~ 691 (769)
T PF05911_consen 623 KNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEK 691 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666655555555554444333333333333221 1233333455556655544
No 297
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=56.59 E-value=3.2e+02 Score=30.48 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 015426 301 KMQAKLDRCVREKKFLDDLNENLL 324 (407)
Q Consensus 301 ~l~~~l~~~~~e~~~l~eln~~l~ 324 (407)
.|+.+-+++.+.....++-|+.+.
T Consensus 452 ~lq~kneellk~~e~q~~Enk~~~ 475 (861)
T PF15254_consen 452 LLQSKNEELLKVIENQKEENKRLR 475 (861)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 298
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=56.35 E-value=8.8 Score=27.82 Aligned_cols=36 Identities=25% Similarity=0.600 Sum_probs=27.8
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhccccc
Q 015426 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKW 128 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w 128 (407)
+...|++|-+.|.+....++=..|+-.+|..|....
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~ 39 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKA 39 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhhC
Confidence 457899999999655555666789999999996543
No 299
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=56.18 E-value=2.2e+02 Score=30.13 Aligned_cols=14 Identities=36% Similarity=0.658 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHHHH
Q 015426 349 DDKIQDSEAQLRDL 362 (407)
Q Consensus 349 ~~~i~~Leeq~~dL 362 (407)
+.++++|++++.+|
T Consensus 151 ~~~~~~~~~~l~~l 164 (525)
T TIGR02231 151 ERRIRELEKQLSEL 164 (525)
T ss_pred HHHHHHHHHHHHHH
Confidence 33445555555555
No 300
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=56.11 E-value=4.8e+02 Score=32.25 Aligned_cols=47 Identities=28% Similarity=0.256 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015426 297 QKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREKM 343 (407)
Q Consensus 297 ~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~ 343 (407)
..+..++..++.+..+...+......+..+++.+..++.++..+++.
T Consensus 837 ~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~ 883 (1822)
T KOG4674|consen 837 KQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKS 883 (1822)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555666666666666666655543
No 301
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=56.08 E-value=1.8e+02 Score=27.24 Aligned_cols=49 Identities=16% Similarity=0.202 Sum_probs=25.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHH
Q 015426 317 DDLNENLLKNQEMWKAKISEIEEREKMALR---AKDDKIQDSEAQLRDLMAY 365 (407)
Q Consensus 317 ~eln~~l~~~~~~l~~kl~~~~~~~~~~~~---~~~~~i~~Leeq~~dLm~~ 365 (407)
+++|..=...|.....++..++.+...-+. ..+..+..|+.+|.+|..-
T Consensus 160 e~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~ 211 (221)
T PF05700_consen 160 EEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRK 211 (221)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555666666666655443222 2233455566666655443
No 302
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=56.00 E-value=1.9e+02 Score=27.59 Aligned_cols=23 Identities=9% Similarity=0.231 Sum_probs=12.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHH
Q 015426 342 KMALRAKDDKIQDSEAQLRDLMA 364 (407)
Q Consensus 342 ~~~~~~~~~~i~~Leeq~~dLm~ 364 (407)
......++.....|+.++....-
T Consensus 95 ~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 95 EEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666655444
No 303
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.62 E-value=1.9e+02 Score=30.51 Aligned_cols=11 Identities=9% Similarity=0.271 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 015426 298 KLQKMQAKLDR 308 (407)
Q Consensus 298 ~l~~l~~~l~~ 308 (407)
|+..|+.++-+
T Consensus 384 r~~~Ls~RiLR 394 (508)
T KOG3091|consen 384 RHVELSHRILR 394 (508)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 304
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=55.34 E-value=83 Score=32.49 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=10.6
Q ss_pred HHhhhHHHHHHHHHHHHHHHH
Q 015426 345 LRAKDDKIQDSEAQLRDLMAY 365 (407)
Q Consensus 345 ~~~~~~~i~~Leeq~~dLm~~ 365 (407)
+...++++.++++++.+++..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~ 105 (418)
T TIGR00414 85 LTELSAALKALEAELQDKLLS 105 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333444455555555555544
No 305
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=55.27 E-value=2.1e+02 Score=27.87 Aligned_cols=35 Identities=9% Similarity=0.258 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015426 272 YETLLQEAKEETEKIISEAVKKAIAQKLQKMQAKLD 307 (407)
Q Consensus 272 ~E~~l~~l~~~~~~~l~~~~~~~~~~~l~~l~~~l~ 307 (407)
|..+|..|+.+. ++|.+.........+.+|+..++
T Consensus 40 yk~kLa~Lq~~L-eel~~g~~~eYl~~~~~L~~~~k 74 (291)
T KOG4466|consen 40 YKDKLAQLQAQL-EELGQGTAPEYLKRVKKLDESRK 74 (291)
T ss_pred HHHHHHHHHHHH-HHHhccccHHHHHHHHHHHHHHH
Confidence 777777777666 33333333334445555544443
No 306
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=55.12 E-value=3.8e+02 Score=30.89 Aligned_cols=12 Identities=25% Similarity=0.382 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 015426 248 SKVEAIVNEYNE 259 (407)
Q Consensus 248 ~k~~~~~~ey~~ 259 (407)
.+++.+..|+..
T Consensus 684 ~~~~~~q~el~~ 695 (1174)
T KOG0933|consen 684 KELRAIQKELEA 695 (1174)
T ss_pred HHHHHHHHHHHH
Confidence 344555555444
No 307
>PF10079 DUF2317: Uncharacterized protein conserved in bacteria (DUF2317); InterPro: IPR011199 Members of this protein family include BshC, which is an enzyme required for bacillithiol biosynthesis and described as a cysteine-adding enzyme. Bacillithiol is a low-molecular-weight thiol, an analog of glutathione and mycothiol, and is found largely in the Firmicutes.
Probab=55.10 E-value=1.3e+02 Score=32.16 Aligned_cols=31 Identities=19% Similarity=0.160 Sum_probs=18.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q 015426 319 LNENLLKNQEMWKAKISEIEEREKMALRAKD 349 (407)
Q Consensus 319 ln~~l~~~~~~l~~kl~~~~~~~~~~~~~~~ 349 (407)
+...+.+|......+++.+++++.++.+.+.
T Consensus 453 l~~~~e~~~~~~~~ql~~Le~k~~~a~~rk~ 483 (542)
T PF10079_consen 453 LEGLVEKNESKILKQLDYLEKKLLKAEKRKH 483 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445666666667777766665555443
No 308
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF. Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs.
Probab=54.78 E-value=4.1 Score=33.95 Aligned_cols=34 Identities=26% Similarity=0.507 Sum_probs=29.4
Q ss_pred CccceeecccCCCcccccccCccccccCCccccc
Q 015426 144 EKSICFVCQTSENLWMCVICGFVGCGRYKGGHAI 177 (407)
Q Consensus 144 ~~~~C~~C~~~~~l~~Cl~Cg~~~Cgr~~~~Ha~ 177 (407)
.+..|..|+.....|+++.=|.+.|..|.+.|..
T Consensus 2 ~N~~CaDC~~~~p~w~s~~~GifvC~~CsgiHR~ 35 (112)
T smart00105 2 GNKKCFDCGAPNPTWASVNLGVFLCIECSGIHRS 35 (112)
T ss_pred CCCcccCCCCCCCCcEEeccceeEhHHhHHHHHh
Confidence 4678999999999999999999999988877754
No 309
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.68 E-value=2.6e+02 Score=28.80 Aligned_cols=46 Identities=17% Similarity=0.262 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 015426 300 QKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREKMAL 345 (407)
Q Consensus 300 ~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~~~ 345 (407)
..|.+..++..+.-..|+++.-.+.+.+..++.++.+.+.+++..-
T Consensus 137 ~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~ 182 (542)
T KOG0993|consen 137 LDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELS 182 (542)
T ss_pred hhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3445555555555566667777777777777777777666655543
No 310
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=54.67 E-value=2.1e+02 Score=27.73 Aligned_cols=68 Identities=22% Similarity=0.273 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhH
Q 015426 298 KLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDLMAYLE 367 (407)
Q Consensus 298 ~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dLm~~l~ 367 (407)
+.++|+..+++..+=+..-++|.+.|....+.+.+......+. ........+|..+++.-..||.+|.
T Consensus 111 KnekLke~LerEq~wL~Eqqql~~sL~~r~~elk~~~~~~se~--rv~~el~~K~~~~k~~~e~Ll~~Lg 178 (268)
T PF11802_consen 111 KNEKLKEDLEREQQWLDEQQQLLESLNKRHEELKNQVETFSES--RVFQELKTKIEKIKEYKEKLLSFLG 178 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444333323333345555555444444433332221 2223333455666666666666654
No 311
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=54.63 E-value=80 Score=32.40 Aligned_cols=58 Identities=21% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 015426 306 LDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDLM 363 (407)
Q Consensus 306 l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dLm 363 (407)
+..+.+|+..+++-...|....+.|+.++..--.-+...+..-.-+.+-||+|+.|++
T Consensus 214 l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~ 271 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLT 271 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
No 312
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=54.53 E-value=1.4e+02 Score=25.65 Aligned_cols=11 Identities=64% Similarity=0.791 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 015426 354 DSEAQLRDLMA 364 (407)
Q Consensus 354 ~Leeq~~dLm~ 364 (407)
+.++|+.|||.
T Consensus 93 ~fe~qLE~lm~ 103 (134)
T PF15233_consen 93 DFEEQLEDLMG 103 (134)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 313
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=54.51 E-value=9.2 Score=37.84 Aligned_cols=48 Identities=35% Similarity=0.719 Sum_probs=35.9
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhcccccc--CCCCCCccccc
Q 015426 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWT--DSSCPVCRYCQ 140 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~--~~~CP~Cr~~~ 140 (407)
-.+.||+|-+.++......+..+|++..|..|+.... +.+||.||...
T Consensus 248 v~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~ 297 (327)
T KOG2068|consen 248 VPPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPY 297 (327)
T ss_pred cCCCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCcc
Confidence 3489999999987655555566788877777776654 38999999654
No 314
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=54.18 E-value=23 Score=32.45 Aligned_cols=101 Identities=22% Similarity=0.383 Sum_probs=55.6
Q ss_pred CCCCCCcccccccccccCCCceeeecCCCccchhccccccC---CCCCCcccccCCCCccceeecccCCCcc-ccc--cc
Q 015426 90 SSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD---SSCPVCRYCQQQPEKSICFVCQTSENLW-MCV--IC 163 (407)
Q Consensus 90 ~~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~---~~CP~Cr~~~~~~~~~~C~~C~~~~~l~-~Cl--~C 163 (407)
...+.+.|.+|-+.=- +.--|-|+.|..| .|.+ ..||.+.. |..|+..+-+. -|+ .-
T Consensus 56 ~~~~~~~C~nCg~~GH------~~~DCP~~iC~~C--~~~~H~s~~C~~~~~---------C~~Cg~~GH~~~dC~P~~~ 118 (190)
T COG5082 56 IREENPVCFNCGQNGH------LRRDCPHSICYNC--SWDGHRSNHCPKPKK---------CYNCGETGHLSRDCNPSKD 118 (190)
T ss_pred ccccccccchhcccCc------ccccCChhHhhhc--CCCCcccccCCcccc---------cccccccCccccccCcccc
Confidence 3457899999987633 3446779999999 6654 66777733 44454433221 111 00
Q ss_pred CccccccCC-ccccccccccCCceeEee---cCceeEEeccCCcchhh
Q 015426 164 GFVGCGRYK-GGHAIIHWKETEHCYSLE---LETQRVWDYAGDNYVHR 207 (407)
Q Consensus 164 g~~~Cgr~~-~~Ha~~H~~~t~H~~~~~---l~~~~v~cy~cd~~vhr 207 (407)
....|-.+. ..|..+-..+..-.|.+. .....++||.|...-|-
T Consensus 119 ~~~~C~~C~s~~H~s~~Cp~~~k~y~~~~~~~~~~~~~cy~c~~~~H~ 166 (190)
T COG5082 119 QQKSCFDCNSTRHSSEDCPSIWKHYVLNNGDGHPIKKFCYSCGSAGHF 166 (190)
T ss_pred cCcceeccCCCccccccCcccccccccccCCCcceeeeccccCCcccc
Confidence 111222221 233333334444444444 45678999999887664
No 315
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=54.04 E-value=3e+02 Score=29.31 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHhHh
Q 015426 350 DKIQDSEAQLRDLMAYLEA 368 (407)
Q Consensus 350 ~~i~~Leeq~~dLm~~l~~ 368 (407)
..|..|+.++..+..-|++
T Consensus 337 ~~v~~L~~eL~~~r~eLea 355 (522)
T PF05701_consen 337 SEVSSLEAELNKTRSELEA 355 (522)
T ss_pred hHHhhHHHHHHHHHHHHHH
Confidence 3455555555554444433
No 316
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=54.01 E-value=5.6 Score=40.08 Aligned_cols=52 Identities=25% Similarity=0.595 Sum_probs=32.4
Q ss_pred CCCCCCccccccccccc----------CCCc---ee-----eecCCCccchhcccccc---------------CCCCCCc
Q 015426 90 SSTEQPSCPVCLERLDQ----------DTSG---IL-----TTICNHSFHCSCISKWT---------------DSSCPVC 136 (407)
Q Consensus 90 ~~~e~~~C~iCle~~~~----------~~~~---~~-----~~~C~H~F~~~Cl~~w~---------------~~~CP~C 136 (407)
...|+..|-.|+..-.. +..| +. ..-|--.+|.+|+.+|- ...||.|
T Consensus 267 ~~~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtC 346 (358)
T PF10272_consen 267 SGQELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTC 346 (358)
T ss_pred CccccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCC
Confidence 44688899999865331 0001 11 22344567899999981 1569999
Q ss_pred ccccC
Q 015426 137 RYCQQ 141 (407)
Q Consensus 137 r~~~~ 141 (407)
|..|-
T Consensus 347 Ra~FC 351 (358)
T PF10272_consen 347 RAKFC 351 (358)
T ss_pred cccce
Confidence 99873
No 317
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=54.00 E-value=16 Score=27.07 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=19.6
Q ss_pred CCCeeEEEEeccChhhHhhHhhh
Q 015426 28 MDDQYSVLIRFDSQDSADKFYQH 50 (407)
Q Consensus 28 ~~~~y~vll~f~~~~~a~~f~~~ 50 (407)
.+...+||+.|.|.++|..||++
T Consensus 36 ~~~~~~viieFPs~~aa~~~~~s 58 (65)
T PF07045_consen 36 WDPDRVVIIEFPSMEAAKAWYNS 58 (65)
T ss_dssp -SSSEEEEEEESSHHHHHHHHCS
T ss_pred CCCCeEEEEECCCHHHHHHHHCC
Confidence 44577999999999999999975
No 318
>KOG3304 consensus Surfeit family protein 5 [General function prediction only]
Probab=53.72 E-value=1.5e+02 Score=25.61 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015426 251 EAIVNEYNELLAAQLENQKIYYETLLQEAKEET 283 (407)
Q Consensus 251 ~~~~~ey~~lL~~qle~qr~~~E~~l~~l~~~~ 283 (407)
+.+..+|+.-|...+.+--.-|...|.-.+-+.
T Consensus 18 ~al~k~~~~Rl~ddIkS~~dNF~~Ii~~Akv~~ 50 (148)
T KOG3304|consen 18 EALLKSYNKRLKDDIKSIMDNFTEIIKTAKVED 50 (148)
T ss_pred HHHHHHHHHHHHHhHHHHHHhHHHHHHHHhcCC
Confidence 567778999888888887777888887766444
No 319
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=53.62 E-value=2.8e+02 Score=28.78 Aligned_cols=22 Identities=32% Similarity=0.270 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 015426 309 CVREKKFLDDLNENLLKNQEMW 330 (407)
Q Consensus 309 ~~~e~~~l~eln~~l~~~~~~l 330 (407)
+.+++.+..+|-..|.+..+.+
T Consensus 365 fq~ekeatqELieelrkelehl 386 (502)
T KOG0982|consen 365 FQEEKEATQELIEELRKELEHL 386 (502)
T ss_pred HHHhhHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443333
No 320
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=53.51 E-value=1.9e+02 Score=26.78 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 015426 261 LAAQLENQKIYYETLLQEAKEE 282 (407)
Q Consensus 261 L~~qle~qr~~~E~~l~~l~~~ 282 (407)
+..-|+..+.+.++.+.++++.
T Consensus 73 i~~~L~~R~~~I~~~L~~Ae~~ 94 (205)
T PRK06231 73 TQRFLNKRKELIEAEINQANEL 94 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666544
No 321
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=53.35 E-value=6.9 Score=36.57 Aligned_cols=13 Identities=31% Similarity=1.255 Sum_probs=9.0
Q ss_pred CcccccccCcccc
Q 015426 156 NLWMCVICGFVGC 168 (407)
Q Consensus 156 ~l~~Cl~Cg~~~C 168 (407)
..|+|..||...=
T Consensus 47 ~V~vCP~CgyA~~ 59 (214)
T PF09986_consen 47 EVWVCPHCGYAAF 59 (214)
T ss_pred eEEECCCCCCccc
Confidence 4577888886654
No 322
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=53.33 E-value=1.8e+02 Score=26.50 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015426 296 AQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEER 340 (407)
Q Consensus 296 ~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~ 340 (407)
...+..|+.++..+..++......++.|.+....+.-++..++++
T Consensus 122 ~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k 166 (194)
T PF08614_consen 122 EAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEK 166 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555665555555555555566666555665555555444
No 323
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=53.25 E-value=3.9e+02 Score=30.35 Aligned_cols=17 Identities=35% Similarity=0.489 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 015426 253 IVNEYNELLAAQLENQK 269 (407)
Q Consensus 253 ~~~ey~~lL~~qle~qr 269 (407)
+..|--.++.++.+.++
T Consensus 391 Lr~elaql~a~r~q~ek 407 (980)
T KOG0980|consen 391 LRNELAQLLASRTQLEK 407 (980)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444433333
No 324
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=52.70 E-value=1.3e+02 Score=31.26 Aligned_cols=17 Identities=24% Similarity=0.509 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHhH
Q 015426 351 KIQDSEAQLRDLMAYLE 367 (407)
Q Consensus 351 ~i~~Leeq~~dLm~~l~ 367 (407)
++++|++++..|...++
T Consensus 390 ~~~~l~~~~~~l~~~l~ 406 (451)
T PF03961_consen 390 ELKELKEELKELKEELE 406 (451)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 325
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=52.64 E-value=3.7 Score=27.54 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=21.7
Q ss_pred ccceeecccCCCcccccccCccccccCC
Q 015426 145 KSICFVCQTSENLWMCVICGFVGCGRYK 172 (407)
Q Consensus 145 ~~~C~~C~~~~~l~~Cl~Cg~~~Cgr~~ 172 (407)
...|..|......++|..|+...|..+.
T Consensus 3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~ 30 (42)
T PF00643_consen 3 EPKCPEHPEEPLSLFCEDCNEPLCSECT 30 (42)
T ss_dssp SSB-SSTTTSBEEEEETTTTEEEEHHHH
T ss_pred CccCccCCccceEEEecCCCCccCccCC
Confidence 4567777777677889999999998765
No 326
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=52.29 E-value=80 Score=26.18 Aligned_cols=40 Identities=18% Similarity=0.284 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 015426 298 KLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEI 337 (407)
Q Consensus 298 ~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~ 337 (407)
++..+...+..+...+..+-+-|..|.-..+.|+.++.++
T Consensus 16 ~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 16 QLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444455555554444444444443
No 327
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=52.25 E-value=4.8e+02 Score=31.18 Aligned_cols=14 Identities=36% Similarity=0.899 Sum_probs=10.6
Q ss_pred CCCccccccccccc
Q 015426 93 EQPSCPVCLERLDQ 106 (407)
Q Consensus 93 e~~~C~iCle~~~~ 106 (407)
..+.||.|.-.|..
T Consensus 676 ~~~~C~LC~R~f~~ 689 (1311)
T TIGR00606 676 NQSCCPVCQRVFQT 689 (1311)
T ss_pred cCCcCCCCCCCCCC
Confidence 45688888888874
No 328
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=52.09 E-value=2.2e+02 Score=27.20 Aligned_cols=68 Identities=18% Similarity=0.137 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHH
Q 015426 289 EAVKKAIAQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREKMALRAKD-DKIQDSEA 357 (407)
Q Consensus 289 ~~~~~~~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~~~~~~~-~~i~~Lee 357 (407)
.+++..+.++ ..++..++...+.+...+.-...+....+.|..++++..+.++.....-+ ++.+|+..
T Consensus 149 ~slK~vlk~R-~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a~~~~k~e~~Rf~~~k~~D~k~ 217 (243)
T cd07666 149 ETLMGVIKRR-DQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECANNALKADWERWKQNMQTDLRS 217 (243)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333 34555555554444333322234444555666666666655555444422 34444443
No 329
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=52.06 E-value=3.4 Score=38.90 Aligned_cols=36 Identities=28% Similarity=0.665 Sum_probs=24.3
Q ss_pred CCCcccccccc-c-ccCCCceeeecCCCccchhccccc
Q 015426 93 EQPSCPVCLER-L-DQDTSGILTTICNHSFHCSCISKW 128 (407)
Q Consensus 93 e~~~C~iCle~-~-~~~~~~~~~~~C~H~F~~~Cl~~w 128 (407)
+...||||... + .+++.-.+.+-|-|..|.+|+.+.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRI 46 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRI 46 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHH
Confidence 55689999743 3 333333334449999999998874
No 330
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.99 E-value=1.1e+02 Score=23.46 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 015426 311 REKKFLDDLNENLLKNQEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDLMAYL 366 (407)
Q Consensus 311 ~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dLm~~l 366 (407)
-|...|++-|..|....+..+...+.++.+.... .++-..-++.+|.|..-+
T Consensus 25 mEieELKEknn~l~~e~q~~q~~reaL~~eneql----k~e~~~WQerlrsLLGkm 76 (79)
T COG3074 25 MEIEELKEKNNSLSQEVQNAQHQREALERENEQL----KEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhh
Confidence 3444555566666655554444444444332221 123344566666665443
No 331
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=51.76 E-value=2e+02 Score=26.51 Aligned_cols=85 Identities=19% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 015426 287 ISEAVKKAIAQKLQKMQAKLDRCVREKKFLDDLNENLLK---NQEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDLM 363 (407)
Q Consensus 287 l~~~~~~~~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~---~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dLm 363 (407)
+..-+-.+-..++..|++.+..+..++..+.--|+.|.. .++....+.+.-+.++...+....++|+.|.++++...
T Consensus 2 v~~rvlSar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q 81 (194)
T PF15619_consen 2 VTQRVLSARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQ 81 (194)
T ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHhHHH
Q 015426 364 AYLEAEKT 371 (407)
Q Consensus 364 ~~l~~~~~ 371 (407)
.-..+-++
T Consensus 82 ~~~r~~~~ 89 (194)
T PF15619_consen 82 EQERELER 89 (194)
T ss_pred HHHHHHHH
No 332
>PRK11281 hypothetical protein; Provisional
Probab=51.71 E-value=4.6e+02 Score=30.82 Aligned_cols=13 Identities=23% Similarity=0.309 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHH
Q 015426 351 KIQDSEAQLRDLM 363 (407)
Q Consensus 351 ~i~~Leeq~~dLm 363 (407)
.+++|..++.||.
T Consensus 354 ~~~~l~~~iAdlr 366 (1113)
T PRK11281 354 LIEGLADRIADLR 366 (1113)
T ss_pred ccchHHHHHHHHH
Confidence 3456677777766
No 333
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=50.95 E-value=3.7e+02 Score=29.39 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015426 248 SKVEAIVNEYNELLAAQLENQKIYYETLLQE 278 (407)
Q Consensus 248 ~k~~~~~~ey~~lL~~qle~qr~~~E~~l~~ 278 (407)
+++...+.+-...|...++.--.||+.+.+.
T Consensus 57 ~~ma~~h~~l~~~l~~~i~~~~k~~~~~~k~ 87 (611)
T KOG2398|consen 57 EAMAKSHLELSRELQDLIKDVAKYYAEQLKT 87 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555554443
No 334
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=50.79 E-value=1.7e+02 Score=25.65 Aligned_cols=15 Identities=7% Similarity=0.204 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 015426 351 KIQDSEAQLRDLMAY 365 (407)
Q Consensus 351 ~i~~Leeq~~dLm~~ 365 (407)
+|.+|.+.+.+-.-+
T Consensus 97 ~v~eLkeel~~el~~ 111 (146)
T PF05852_consen 97 RVEELKEELEFELER 111 (146)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444443333
No 335
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=50.48 E-value=12 Score=37.02 Aligned_cols=18 Identities=17% Similarity=0.405 Sum_probs=13.7
Q ss_pred ceeEEeccCCcchhhhhh
Q 015426 193 TQRVWDYAGDNYVHRLIQ 210 (407)
Q Consensus 193 ~~~v~cy~cd~~vhrl~~ 210 (407)
.+.+||..||.|+|-.+-
T Consensus 351 Ck~~FCldCDv~iHesLh 368 (378)
T KOG2807|consen 351 CKNVFCLDCDVFIHESLH 368 (378)
T ss_pred ccceeeccchHHHHhhhh
Confidence 456788899999987554
No 336
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=50.30 E-value=53 Score=25.81 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015426 297 QKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEERE 341 (407)
Q Consensus 297 ~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~ 341 (407)
.....|+.++.+++..+..+..+.. ..+.|...++.++++.
T Consensus 28 ~~~~~lk~Klq~ar~~i~~lpgi~~----s~eeq~~~i~~Le~~i 68 (83)
T PF07544_consen 28 TATGSLKHKLQKARAAIRELPGIDR----SVEEQEEEIEELEEQI 68 (83)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccC----CHHHHHHHHHHHHHHH
Confidence 3444455555555544444333333 3345555555555443
No 337
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=50.16 E-value=3.1e+02 Score=28.38 Aligned_cols=24 Identities=13% Similarity=0.075 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHhHhHHHH
Q 015426 349 DDKIQDSEAQLRDLMAYLEAEKTL 372 (407)
Q Consensus 349 ~~~i~~Leeq~~dLm~~l~~~~~~ 372 (407)
..-+.++.+++..|..-+..-..+
T Consensus 153 ~~l~~~~~~~i~~l~~~~~~l~~~ 176 (420)
T COG4942 153 GALNPARAERIDALKATLKQLAAV 176 (420)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHH
Confidence 345566677776666555444333
No 338
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=50.15 E-value=4.1e+02 Score=29.78 Aligned_cols=9 Identities=33% Similarity=0.235 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 015426 355 SEAQLRDLM 363 (407)
Q Consensus 355 Leeq~~dLm 363 (407)
||..-+|-+
T Consensus 1003 ~Eqer~D~~ 1011 (1259)
T KOG0163|consen 1003 LEQERRDHE 1011 (1259)
T ss_pred HHHHHHHHH
Confidence 333344433
No 339
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=50.00 E-value=2.5e+02 Score=27.15 Aligned_cols=11 Identities=27% Similarity=0.365 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 015426 351 KIQDSEAQLRD 361 (407)
Q Consensus 351 ~i~~Leeq~~d 361 (407)
+|..|..|+..
T Consensus 121 qIa~L~rqlq~ 131 (258)
T PF15397_consen 121 QIANLVRQLQQ 131 (258)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 340
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins []. The GTP-bound form of ARF is essential for the maintenance of normal Golgi morphology, it participates in recruitment of coat proteins which are required for budding and fission of membranes. Before the fusion with an acceptor compartment the membrane must be uncoated. This step required the hydrolysis of GTP associated to ARF. These proteins contain a characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) which displays some similarity to the C4-type GATA zinc finger. The ARFGAP domain display no obvious similarity to other GAP proteins. The 3D structure of the ARFGAP domain of the PYK2-associated protein beta has been solved []. It consists of a three-stranded beta-sheet surrounded by 5 alpha helices. The domain is organised around a central zinc atom which is coordinated by 4 cysteines. The ARFGAP domain is clearly unrelated to the other GAP proteins structures which are exclusively helical. Classical GAP proteins accelerate GTPase activity by supplying an arginine finger to the active site. The crystal structure of ARFGAP bound to ARF revealed that the ARFGAP domain does not supply an arginine to the active site which suggests a more indirect role of the ARFGAP domain in the GTPase hydrolysis []. The Rev protein of human immunodeficiency virus type 1 (HIV-1) facilitates nuclear export of unspliced and partly-spliced viral RNAs []. Rev contains an RNA-binding domain and an effector domain; the latter is believed to interact with a cellular cofactor required for the Rev response and hence HIV-1 replication. Human Rev interacting protein (hRIP) specifically interacts with the Rev effector. The amino acid sequence of hRIP is characterised by an N-terminal, C-4 class zinc finger motif.; GO: 0008060 ARF GTPase activator activity, 0008270 zinc ion binding, 0032312 regulation of ARF GTPase activity; PDB: 2P57_A 2CRR_A 2OWA_B 3O47_B 3DWD_A 1DCQ_A 2CRW_A 3MDB_D 3FEH_A 3LJU_X ....
Probab=49.91 E-value=4.1 Score=34.17 Aligned_cols=35 Identities=23% Similarity=0.556 Sum_probs=25.3
Q ss_pred CCCccceeecccCCCcccccccCccccccCCcccc
Q 015426 142 QPEKSICFVCQTSENLWMCVICGFVGCGRYKGGHA 176 (407)
Q Consensus 142 ~~~~~~C~~C~~~~~l~~Cl~Cg~~~Cgr~~~~Ha 176 (407)
.+.+..|.+|+.....|.++.=|...|..|.+.|.
T Consensus 10 ~~~N~~CaDCg~~~p~w~s~~~GiflC~~Cag~HR 44 (116)
T PF01412_consen 10 KPGNKVCADCGAPNPTWASLNYGIFLCLECAGIHR 44 (116)
T ss_dssp STTCTB-TTT-SBS--EEETTTTEEE-HHHHHHHH
T ss_pred CcCcCcCCCCCCCCCCEEEeecChhhhHHHHHHHH
Confidence 46788999999999999999999999988876664
No 341
>PRK04863 mukB cell division protein MukB; Provisional
Probab=49.69 E-value=5.6e+02 Score=31.20 Aligned_cols=9 Identities=22% Similarity=0.287 Sum_probs=5.1
Q ss_pred eeEEeccCC
Q 015426 194 QRVWDYAGD 202 (407)
Q Consensus 194 ~~v~cy~cd 202 (407)
..|++|.++
T Consensus 215 ~fl~~yll~ 223 (1486)
T PRK04863 215 RSLRDYLLP 223 (1486)
T ss_pred HHHHHHcCC
Confidence 446666654
No 342
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=49.67 E-value=2.4e+02 Score=26.92 Aligned_cols=25 Identities=8% Similarity=0.169 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015426 264 QLENQKIYYETLLQEAKEETEKIIS 288 (407)
Q Consensus 264 qle~qr~~~E~~l~~l~~~~~~~l~ 288 (407)
+.+..+.-|+.++.+++.+....+.
T Consensus 54 eA~~~~~e~e~~l~~a~~ea~~ii~ 78 (250)
T PRK14474 54 EAGQEAERYRQKQQSLEQQRASFMA 78 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444466666666555533333
No 343
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.48 E-value=3.6e+02 Score=28.93 Aligned_cols=12 Identities=50% Similarity=0.786 Sum_probs=6.7
Q ss_pred CCCCcccccccc
Q 015426 92 TEQPSCPVCLER 103 (407)
Q Consensus 92 ~e~~~C~iCle~ 103 (407)
.+...|||=|-+
T Consensus 394 d~~~~cP~~L~R 405 (741)
T KOG4460|consen 394 DSDFSCPVKLHR 405 (741)
T ss_pred cccCCCCchhhh
Confidence 345566665544
No 344
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=49.14 E-value=3.4e+02 Score=28.47 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 015426 261 LAAQLENQKIYYETLLQEAKEE 282 (407)
Q Consensus 261 L~~qle~qr~~~E~~l~~l~~~ 282 (407)
+...|+---.|+|.++.+|..+
T Consensus 332 ~IqdLq~sN~yLe~kvkeLQ~k 353 (527)
T PF15066_consen 332 RIQDLQCSNLYLEKKVKELQMK 353 (527)
T ss_pred HHHHhhhccHHHHHHHHHHHHH
Confidence 3444555555666666665543
No 345
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=49.05 E-value=7.1 Score=27.22 Aligned_cols=32 Identities=31% Similarity=0.601 Sum_probs=19.8
Q ss_pred cccccccccccCCCceeeecCCCccchhccccc
Q 015426 96 SCPVCLERLDQDTSGILTTICNHSFHCSCISKW 128 (407)
Q Consensus 96 ~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w 128 (407)
.|+||...... ..-+.=-.|+..||..|+..-
T Consensus 1 ~C~vC~~~~~~-~~~i~C~~C~~~~H~~C~~~~ 32 (51)
T PF00628_consen 1 YCPVCGQSDDD-GDMIQCDSCNRWYHQECVGPP 32 (51)
T ss_dssp EBTTTTSSCTT-SSEEEBSTTSCEEETTTSTSS
T ss_pred eCcCCCCcCCC-CCeEEcCCCChhhCcccCCCC
Confidence 48889883221 211222368889999998653
No 346
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=48.87 E-value=2.2e+02 Score=26.29 Aligned_cols=29 Identities=24% Similarity=0.302 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 015426 332 AKISEIEEREKMALRAKDDKIQDSEAQLR 360 (407)
Q Consensus 332 ~kl~~~~~~~~~~~~~~~~~i~~Leeq~~ 360 (407)
-+..+++.+........+.+|.+|+.++.
T Consensus 121 ~r~~el~~~r~~e~~~YesRI~dLE~~L~ 149 (196)
T PF15272_consen 121 LRNKELQNERERERIAYESRIADLERQLN 149 (196)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444333444455566666666654
No 347
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=48.87 E-value=2.4e+02 Score=26.66 Aligned_cols=11 Identities=36% Similarity=0.428 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 015426 305 KLDRCVREKKF 315 (407)
Q Consensus 305 ~l~~~~~e~~~ 315 (407)
+++.+.+|+..
T Consensus 143 kl~E~~~Ekee 153 (290)
T COG4026 143 KLEELQKEKEE 153 (290)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 348
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=48.80 E-value=3.2e+02 Score=28.14 Aligned_cols=23 Identities=4% Similarity=0.348 Sum_probs=17.5
Q ss_pred CChhHHhHhhHHHHHh-hheeEEE
Q 015426 1 MTYADFCQFCASFIQH-ILEMRIV 23 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~-i~~~r~i 23 (407)
+|.++|..++...++. +..+.|.
T Consensus 6 ~svsel~~~ik~~le~~~~~v~v~ 29 (438)
T PRK00286 6 LSVSELNRYVKSLLERDLGQVWVR 29 (438)
T ss_pred CcHHHHHHHHHHHHHhhCCcEEEE
Confidence 4778888888887765 7777775
No 349
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=48.79 E-value=5.8 Score=30.31 Aligned_cols=39 Identities=23% Similarity=0.579 Sum_probs=21.1
Q ss_pred CcccccccccccCCCceeeecCCCccchhccccccC-CCCCCcccccC
Q 015426 95 PSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD-SSCPVCRYCQQ 141 (407)
Q Consensus 95 ~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~-~~CP~Cr~~~~ 141 (407)
..||.|...|+. .. ++.+|..|...... ..||-|...+.
T Consensus 2 ~~CP~C~~~L~~-----~~---~~~~C~~C~~~~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEW-----QG---GHYHCEACQKDYKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEE-----ET---TEEEETTT--EEEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEE-----eC---CEEECccccccceecccCCCcccHHH
Confidence 579999888774 11 66777777766543 77888887654
No 350
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=48.47 E-value=8.5 Score=37.98 Aligned_cols=9 Identities=33% Similarity=0.597 Sum_probs=5.0
Q ss_pred CCCeeEEEE
Q 015426 28 MDDQYSVLI 36 (407)
Q Consensus 28 ~~~~y~vll 36 (407)
+.++|.|++
T Consensus 215 T~G~Y~V~l 223 (378)
T KOG2807|consen 215 TGGRYSVAL 223 (378)
T ss_pred hCCeEEEEe
Confidence 335666655
No 351
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=48.25 E-value=1.1e+02 Score=22.81 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=13.5
Q ss_pred HHhhhHHHHHHHHHHHHHHHHh
Q 015426 345 LRAKDDKIQDSEAQLRDLMAYL 366 (407)
Q Consensus 345 ~~~~~~~i~~Leeq~~dLm~~l 366 (407)
+..-...|..|+.+++++....
T Consensus 42 l~~s~~kI~~L~~~L~~l~~~~ 63 (70)
T PF02185_consen 42 LRESNQKIELLREQLEKLQQRS 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3334456777777777766543
No 352
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=48.24 E-value=4.2e+02 Score=29.30 Aligned_cols=71 Identities=17% Similarity=0.242 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHh
Q 015426 297 QKLQKMQAKLDRCVREKKFLDDLNENLLKN-------QEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDLMAYLEA 368 (407)
Q Consensus 297 ~~l~~l~~~l~~~~~e~~~l~eln~~l~~~-------~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dLm~~l~~ 368 (407)
+++..|++.+..+.++...++.....+.+. ...+...++.+...+.... ..++....|..++.||...|..
T Consensus 241 ~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eLkGnIRV 318 (670)
T KOG0239|consen 241 KKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILELKGNIRV 318 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCceE
Confidence 344555555555444444333222222221 1122333444444444333 3334556677777776666544
No 353
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=47.99 E-value=41 Score=23.50 Aligned_cols=28 Identities=14% Similarity=0.234 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHhHhHHHHhhhc
Q 015426 349 DDKIQDSEAQLRDLMAYLEAEKTLQQLS 376 (407)
Q Consensus 349 ~~~i~~Leeq~~dLm~~l~~~~~~~~~~ 376 (407)
.+++..|+.|++.|..-+...+|+.-.+
T Consensus 5 rqQv~aL~~qv~~Lq~~fs~yKKa~lFp 32 (46)
T PF09006_consen 5 RQQVEALQGQVQRLQAAFSQYKKAELFP 32 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3478889999999999999988886663
No 354
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=47.94 E-value=2.4e+02 Score=26.51 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=17.6
Q ss_pred HHHHH-HHHHHHHHHHhHhHHHHhhh
Q 015426 351 KIQDS-EAQLRDLMAYLEAEKTLQQL 375 (407)
Q Consensus 351 ~i~~L-eeq~~dLm~~l~~~~~~~~~ 375 (407)
.|.+- -+|+++|-.|++||-...+.
T Consensus 183 ~il~~~~e~l~~L~~lv~AQl~Yh~q 208 (220)
T cd07617 183 GISSTHVNHLRCLHEFVEAQATYYAQ 208 (220)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 34444 38888898898888776553
No 355
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=47.85 E-value=1.6e+02 Score=30.63 Aligned_cols=19 Identities=11% Similarity=0.331 Sum_probs=10.1
Q ss_pred HHHhhhHHHHHHHHHHHHH
Q 015426 344 ALRAKDDKIQDSEAQLRDL 362 (407)
Q Consensus 344 ~~~~~~~~i~~Leeq~~dL 362 (407)
.+...++++..|+++++..
T Consensus 390 ~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 390 ELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3344444555566666665
No 356
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=47.81 E-value=7.2 Score=27.42 Aligned_cols=40 Identities=20% Similarity=0.535 Sum_probs=21.7
Q ss_pred cccccccccccCCCceeeecCC-CccchhccccccC--CCCCCcccccC
Q 015426 96 SCPVCLERLDQDTSGILTTICN-HSFHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 96 ~C~iCle~~~~~~~~~~~~~C~-H~F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
.|--|+-.... .+.|. |-.|..|+..... ..||+|.++.+
T Consensus 4 nCKsCWf~~k~------Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LP 46 (50)
T PF03854_consen 4 NCKSCWFANKG------LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLP 46 (50)
T ss_dssp ---SS-S--SS------EEE-SS-EEEHHHHHHT-SSSSEETTTTEE--
T ss_pred cChhhhhcCCC------eeeecchhHHHHHHHHHhccccCCCcccCcCc
Confidence 35555544332 44665 8899999988764 67999998753
No 357
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=47.68 E-value=28 Score=35.36 Aligned_cols=13 Identities=38% Similarity=0.624 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 015426 350 DKIQDSEAQLRDL 362 (407)
Q Consensus 350 ~~i~~Leeq~~dL 362 (407)
++|..|+..++||
T Consensus 172 k~i~~l~~kl~Dl 184 (370)
T PF02994_consen 172 KRIKKLEDKLDDL 184 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 358
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.64 E-value=8.1 Score=39.09 Aligned_cols=47 Identities=26% Similarity=0.502 Sum_probs=37.0
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhccccccC-----CCCCCccccc
Q 015426 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD-----SSCPVCRYCQ 140 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~-----~~CP~Cr~~~ 140 (407)
....|||=-+.-. +...|..+.|||.-+.+-+.+... ..||-|-...
T Consensus 333 SvF~CPVlKeqts-deNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 333 SVFICPVLKEQTS-DENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred ceeecccchhhcc-CCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 5678999888866 566799999999999999888642 4588886543
No 359
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=47.59 E-value=4.3e+02 Score=29.29 Aligned_cols=13 Identities=0% Similarity=0.095 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 015426 269 KIYYETLLQEAKE 281 (407)
Q Consensus 269 r~~~E~~l~~l~~ 281 (407)
.+++++++.++++
T Consensus 196 ~~~L~~ql~~l~~ 208 (754)
T TIGR01005 196 ADFLAPEIADLSK 208 (754)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555444
No 360
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.12 E-value=4.7e+02 Score=29.52 Aligned_cols=12 Identities=8% Similarity=0.218 Sum_probs=5.1
Q ss_pred eecCCCccchhc
Q 015426 113 TTICNHSFHCSC 124 (407)
Q Consensus 113 ~~~C~H~F~~~C 124 (407)
.+.|.-.||..|
T Consensus 385 ~lRcAv~ycf~s 396 (970)
T KOG0946|consen 385 SLRCAVLYCFRS 396 (970)
T ss_pred hHHHHHHHHHHH
Confidence 344444444444
No 361
>KOG1705 consensus Uncharacterized conserved protein, contains CXXC motifs [Function unknown]
Probab=47.05 E-value=12 Score=29.92 Aligned_cols=39 Identities=33% Similarity=0.615 Sum_probs=25.9
Q ss_pred CCCCCCcccccCCC-CccceeecccCCCcccccccCcccc
Q 015426 130 DSSCPVCRYCQQQP-EKSICFVCQTSENLWMCVICGFVGC 168 (407)
Q Consensus 130 ~~~CP~Cr~~~~~~-~~~~C~~C~~~~~l~~Cl~Cg~~~C 168 (407)
+..||+|-.-+.|- ..-.|..|.......-|.+||.+|-
T Consensus 27 DgkC~ICDS~VRP~tlVRiC~eC~~Gs~q~~ciic~~~gV 66 (110)
T KOG1705|consen 27 DGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGVGV 66 (110)
T ss_pred CCcccccccccccceeeeeehhcCCccccCceEEecCCcc
Confidence 36788886544432 3456778877776667888887764
No 362
>PF05766 NinG: Bacteriophage Lambda NinG protein; InterPro: IPR008713 The ninR region of phage lambda contains two recombination genes, ninB (also known as orf) and ninG (also known as rap). These genes are involved in the RecF and RecBCD recombination pathways of Escherichia coli that operate on phage lambda [, ]. NinB and NinG participate in Red recombination, the primary pathway operating when wild-type lambda grows lytically in rec+ cells [].
Probab=47.05 E-value=1e+02 Score=28.29 Aligned_cols=12 Identities=33% Similarity=0.598 Sum_probs=10.1
Q ss_pred Cccccccccccc
Q 015426 95 PSCPVCLERLDQ 106 (407)
Q Consensus 95 ~~C~iCle~~~~ 106 (407)
-.|.+|-+.|.+
T Consensus 7 rKCKvCg~~F~P 18 (189)
T PF05766_consen 7 RKCKVCGEWFVP 18 (189)
T ss_pred CcCcccCCcccc
Confidence 579999999985
No 363
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=46.75 E-value=4.7e+02 Score=30.36 Aligned_cols=24 Identities=17% Similarity=0.391 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 015426 294 AIAQKLQKMQAKLDRCVREKKFLD 317 (407)
Q Consensus 294 ~~~~~l~~l~~~l~~~~~e~~~l~ 317 (407)
....+++++..+++.+.+++..+.
T Consensus 445 ~~~~~ieele~el~~~~~~l~~~~ 468 (1041)
T KOG0243|consen 445 EMAEQIEELEEELENLEKQLKDLT 468 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555554444433
No 364
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=46.73 E-value=1.7e+02 Score=30.21 Aligned_cols=21 Identities=24% Similarity=0.514 Sum_probs=10.6
Q ss_pred HHhhhHHHHHHHHHHHHHHHH
Q 015426 345 LRAKDDKIQDSEAQLRDLMAY 365 (407)
Q Consensus 345 ~~~~~~~i~~Leeq~~dLm~~ 365 (407)
++..++++.++++++.+++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T PRK05431 82 IKALEAELDELEAELEELLLR 102 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333444555556666555443
No 365
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=46.60 E-value=3e+02 Score=27.19 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 015426 247 SSKVEAIVNEYNELLAAQLENQKIY--YETLLQEAKEET 283 (407)
Q Consensus 247 ~~k~~~~~~ey~~lL~~qle~qr~~--~E~~l~~l~~~~ 283 (407)
.+|++.+...|..++...-.-++.+ ++.....+..+.
T Consensus 21 eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek 59 (309)
T PF09728_consen 21 EEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEK 59 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999988666555554 334444444443
No 366
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=46.59 E-value=14 Score=38.96 Aligned_cols=64 Identities=19% Similarity=0.470 Sum_probs=49.7
Q ss_pred CCCccceeecccCC-Cccc-ccccCccccccCCccccccccccCCceeEeecCceeEEeccCCcchhh
Q 015426 142 QPEKSICFVCQTSE-NLWM-CVICGFVGCGRYKGGHAIIHWKETEHCYSLELETQRVWDYAGDNYVHR 207 (407)
Q Consensus 142 ~~~~~~C~~C~~~~-~l~~-Cl~Cg~~~Cgr~~~~Ha~~H~~~t~H~~~~~l~~~~v~cy~cd~~vhr 207 (407)
+.....|..|+.-. .+.. |+.|+..+|- .+.|...|-...+|...+++.++-.+|+.|++||..
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~i~~ 105 (492)
T KOG1867|consen 40 PLKTINCGTCGVLQIRLAVPCLICDSLGCL--SNSHKLEHSGNKKHNNTIDVNNGLLYCFACPDFIYD 105 (492)
T ss_pred ccccceeEEechhhhhhcccceechhcccc--cccccccccccccccccceeehhhheeccCCcEeec
Confidence 34456777775533 3444 8999999983 355667788889999999999999999999999965
No 367
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=46.39 E-value=62 Score=26.57 Aligned_cols=12 Identities=17% Similarity=0.410 Sum_probs=5.5
Q ss_pred hhHHHHHHHHHH
Q 015426 348 KDDKIQDSEAQL 359 (407)
Q Consensus 348 ~~~~i~~Leeq~ 359 (407)
+.+.|.+|+++|
T Consensus 88 ~~k~i~~le~~I 99 (100)
T PF04568_consen 88 HRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 334444555444
No 368
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=46.33 E-value=2.3e+02 Score=25.81 Aligned_cols=13 Identities=15% Similarity=0.394 Sum_probs=5.8
Q ss_pred hHHHHHHHHHHHH
Q 015426 243 DALLSSKVEAIVN 255 (407)
Q Consensus 243 ~~~~~~k~~~~~~ 255 (407)
+.+++..++.+..
T Consensus 61 ~~ly~~~F~ELIR 73 (189)
T PF10211_consen 61 EELYSQCFDELIR 73 (189)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 369
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=46.25 E-value=3.7e+02 Score=28.05 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 015426 262 AAQLENQKIYYETLLQEAKEET 283 (407)
Q Consensus 262 ~~qle~qr~~~E~~l~~l~~~~ 283 (407)
..+++..++-|+..+.+.+.+.
T Consensus 48 ~~ea~~~~~~~e~~L~~Ak~ea 69 (445)
T PRK13428 48 ADRLAEADQAHTKAVEDAKAEA 69 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555555554
No 370
>PLN02678 seryl-tRNA synthetase
Probab=46.15 E-value=1.9e+02 Score=30.31 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=11.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHH
Q 015426 344 ALRAKDDKIQDSEAQLRDLMAY 365 (407)
Q Consensus 344 ~~~~~~~~i~~Leeq~~dLm~~ 365 (407)
.+...+.++.++++++.+++..
T Consensus 86 ei~~le~~~~~~~~~l~~~~~~ 107 (448)
T PLN02678 86 EITEKEAEVQEAKAALDAKLKT 107 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444555556666555443
No 371
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=46.05 E-value=3.1e+02 Score=27.18 Aligned_cols=10 Identities=40% Similarity=0.444 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 015426 274 TLLQEAKEET 283 (407)
Q Consensus 274 ~~l~~l~~~~ 283 (407)
.+|..++.+.
T Consensus 84 Kkl~~l~keK 93 (310)
T PF09755_consen 84 KKLQQLKKEK 93 (310)
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 372
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=46.03 E-value=2.7e+02 Score=26.55 Aligned_cols=30 Identities=17% Similarity=0.370 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015426 248 SKVEAIVNEYNELLAAQLENQKIYYETLLQEAKE 281 (407)
Q Consensus 248 ~k~~~~~~ey~~lL~~qle~qr~~~E~~l~~l~~ 281 (407)
.-++.+.-+| ..+|+.|-.+|..+..++..
T Consensus 74 ~~LeeliNkW----s~el~~Qe~vF~~q~~qvNa 103 (254)
T KOG2196|consen 74 KTLEELINKW----SLELEEQERVFLQQATQVNA 103 (254)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHhH
Confidence 4456555554 45677778889988777654
No 373
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=45.73 E-value=2.5e+02 Score=25.96 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015426 263 AQLENQKIYYETLLQEAKEETEKIISEA 290 (407)
Q Consensus 263 ~qle~qr~~~E~~l~~l~~~~~~~l~~~ 290 (407)
.+.+....-|+.++.+.+.+..+.+..+
T Consensus 96 ~eA~~~l~e~e~~L~~A~~eA~~Ii~~A 123 (205)
T PRK06231 96 QQAQQLLENAKQRHENALAQAKEIIDQA 123 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444446666666666654444333
No 374
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=45.50 E-value=16 Score=39.86 Aligned_cols=45 Identities=20% Similarity=0.349 Sum_probs=25.9
Q ss_pred cchhcccccc--CCCCCCcccccCCCCccceeecccC--CCcccccccCccc
Q 015426 120 FHCSCISKWT--DSSCPVCRYCQQQPEKSICFVCQTS--ENLWMCVICGFVG 167 (407)
Q Consensus 120 F~~~Cl~~w~--~~~CP~Cr~~~~~~~~~~C~~C~~~--~~l~~Cl~Cg~~~ 167 (407)
+|..|-..-. ...||.|...+. ...|..|+.. ....+|..||...
T Consensus 3 ~Cp~Cg~~n~~~akFC~~CG~~l~---~~~Cp~CG~~~~~~~~fC~~CG~~~ 51 (645)
T PRK14559 3 ICPQCQFENPNNNRFCQKCGTSLT---HKPCPQCGTEVPVDEAHCPNCGAET 51 (645)
T ss_pred cCCCCCCcCCCCCccccccCCCCC---CCcCCCCCCCCCcccccccccCCcc
Confidence 4555544432 256777766543 2467777653 3556677777654
No 375
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=45.38 E-value=2.4e+02 Score=28.17 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=9.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Q 015426 318 DLNENLLKNQEMWKAKISEIEER 340 (407)
Q Consensus 318 eln~~l~~~~~~l~~kl~~~~~~ 340 (407)
+-|+.|....+.+++++.++..+
T Consensus 79 e~Nk~L~~Ev~~Lrqkl~E~qGD 101 (319)
T PF09789_consen 79 EQNKKLKEEVEELRQKLNEAQGD 101 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhch
Confidence 34444444444444444444433
No 376
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=45.21 E-value=2.4e+02 Score=25.64 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 015426 295 IAQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREKMALRA 347 (407)
Q Consensus 295 ~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~~~~~ 347 (407)
++.+++.++..++..-..+..-.+-+-.+......+++++..++.+..+.+..
T Consensus 84 lE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~l 136 (189)
T TIGR02132 84 LEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILEL 136 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554433333222333344444444555555555554444433
No 377
>PRK05580 primosome assembly protein PriA; Validated
Probab=45.16 E-value=14 Score=40.69 Aligned_cols=46 Identities=22% Similarity=0.416 Sum_probs=34.2
Q ss_pred CccchhccccccCCCCCCcccccC---CCCccceeecccCCC-cccccccCcc
Q 015426 118 HSFHCSCISKWTDSSCPVCRYCQQ---QPEKSICFVCQTSEN-LWMCVICGFV 166 (407)
Q Consensus 118 H~F~~~Cl~~w~~~~CP~Cr~~~~---~~~~~~C~~C~~~~~-l~~Cl~Cg~~ 166 (407)
..+|..|-.. ..||.|-..+. ......|..|+.... .|.|..||..
T Consensus 381 ~~~C~~Cg~~---~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~ 430 (679)
T PRK05580 381 FLLCRDCGWV---AECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGST 430 (679)
T ss_pred ceEhhhCcCc---cCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCC
Confidence 3477777533 68999987653 355678999998764 6999999865
No 378
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=45.08 E-value=2.1e+02 Score=25.89 Aligned_cols=16 Identities=38% Similarity=0.461 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHh
Q 015426 351 KIQDSEAQLRDLMAYL 366 (407)
Q Consensus 351 ~i~~Leeq~~dLm~~l 366 (407)
++++||-|+.|-..-|
T Consensus 160 ElqELE~QL~DRl~~l 175 (179)
T PF14723_consen 160 ELQELEFQLEDRLLQL 175 (179)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666666654444
No 379
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=44.78 E-value=3.4e+02 Score=27.24 Aligned_cols=112 Identities=16% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015426 263 AQLENQKIYYETLLQEAKEETE-------------------KIISEAVKKAIAQKLQKMQAKLDRCVREKKFLDDLNENL 323 (407)
Q Consensus 263 ~qle~qr~~~E~~l~~l~~~~~-------------------~~l~~~~~~~~~~~l~~l~~~l~~~~~e~~~l~eln~~l 323 (407)
.+++.+....+..+..+..... ..+.......+..+...++.++..+..++..++.--..+
T Consensus 84 ~~l~~~~~~l~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~ 163 (423)
T TIGR01843 84 AELESQVLRLEAEVARLRAEADSQAAIEFPDDLLSAEDPAVPELIKGQQSLFESRKSTLRAQLELILAQIKQLEAELAGL 163 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCChHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhHHHHhh
Q 015426 324 LKNQEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDLMAYLEAEKTLQQ 374 (407)
Q Consensus 324 ~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dLm~~l~~~~~~~~ 374 (407)
....+..+.++..+++++.......++.+..-.+-...-..+.+++..+..
T Consensus 164 ~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~~~~~~~~~~~~~~l~~ 214 (423)
T TIGR01843 164 QAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQGELGR 214 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHH
No 380
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=44.49 E-value=1.9e+02 Score=27.73 Aligned_cols=64 Identities=16% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-----------------------------------------------
Q 015426 299 LQKMQAKLDRCVREKKFLDDLNENLLKNQEMWK----------------------------------------------- 331 (407)
Q Consensus 299 l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~----------------------------------------------- 331 (407)
|+.|+.++..+..++...++|+..|..+...+.
T Consensus 1 l~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~si 80 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSI 80 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccH
Q ss_pred --------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 015426 332 --------AKISEIEEREKMALRAKDDKIQDSEAQLRDL 362 (407)
Q Consensus 332 --------~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dL 362 (407)
.+...-..+++..++...++|..|+.++..|
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L 119 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESL 119 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 381
>PRK00846 hypothetical protein; Provisional
Probab=44.49 E-value=1.5e+02 Score=23.11 Aligned_cols=20 Identities=15% Similarity=0.091 Sum_probs=11.5
Q ss_pred hhhHHHHHHHHHHHHHHHHh
Q 015426 347 AKDDKIQDSEAQLRDLMAYL 366 (407)
Q Consensus 347 ~~~~~i~~Leeq~~dLm~~l 366 (407)
.++..|..|++|++-|.--|
T Consensus 38 ~qq~~I~~L~~ql~~L~~rL 57 (77)
T PRK00846 38 DARLTGARNAELIRHLLEDL 57 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445666777766665543
No 382
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=44.34 E-value=1.2e+02 Score=22.18 Aligned_cols=17 Identities=24% Similarity=0.561 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHhH
Q 015426 351 KIQDSEAQLRDLMAYLE 367 (407)
Q Consensus 351 ~i~~Leeq~~dLm~~l~ 367 (407)
.|.+|++-++|||.--+
T Consensus 29 ~ve~i~envk~ll~lYE 45 (55)
T PF05377_consen 29 SVEKIEENVKDLLSLYE 45 (55)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556666666665433
No 383
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=44.10 E-value=2.3e+02 Score=25.07 Aligned_cols=7 Identities=29% Similarity=0.477 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 015426 261 LAAQLEN 267 (407)
Q Consensus 261 L~~qle~ 267 (407)
|..++..
T Consensus 84 L~~el~~ 90 (169)
T PF07106_consen 84 LREELAE 90 (169)
T ss_pred HHHHHHH
Confidence 3444433
No 384
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=44.05 E-value=6.1e+02 Score=29.99 Aligned_cols=8 Identities=38% Similarity=1.041 Sum_probs=3.8
Q ss_pred ccCccccc
Q 015426 162 ICGFVGCG 169 (407)
Q Consensus 162 ~Cg~~~Cg 169 (407)
.||-..|+
T Consensus 1397 ~cGg~sC~ 1404 (1758)
T KOG0994|consen 1397 TCGGLSCR 1404 (1758)
T ss_pred CccCcccc
Confidence 44455553
No 385
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=43.92 E-value=3e+02 Score=29.11 Aligned_cols=19 Identities=16% Similarity=0.485 Sum_probs=10.0
Q ss_pred HHhhhHHHHHHHHHHHHHH
Q 015426 345 LRAKDDKIQDSEAQLRDLM 363 (407)
Q Consensus 345 ~~~~~~~i~~Leeq~~dLm 363 (407)
++..+++|..|+.++..|.
T Consensus 154 ~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 154 IRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3344445566666665543
No 386
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=43.90 E-value=2.7e+02 Score=25.78 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 015426 258 NELLAAQLENQKIYYETLLQEAK 280 (407)
Q Consensus 258 ~~lL~~qle~qr~~~E~~l~~l~ 280 (407)
..+|..+|+.....|......+.
T Consensus 13 i~~leeele~aqErl~~a~~KL~ 35 (205)
T KOG1003|consen 13 IQLLEEELDRAQERLATALQKLE 35 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777776666655555444
No 387
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=43.87 E-value=4.9e+02 Score=28.86 Aligned_cols=14 Identities=14% Similarity=0.261 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q 015426 259 ELLAAQLENQKIYY 272 (407)
Q Consensus 259 ~lL~~qle~qr~~~ 272 (407)
..|..|++..|+-.
T Consensus 197 ~~L~~ql~~l~~~l 210 (754)
T TIGR01005 197 DFLAPEIADLSKQS 210 (754)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555554443
No 388
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=43.59 E-value=4.6e+02 Score=28.47 Aligned_cols=112 Identities=16% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015426 246 LSSKVEAIVNEYNELLAAQLENQKIYYE--TLLQEAKEETEKIISEAVKKA----IAQKLQKMQAKLDRCVREKKFLDDL 319 (407)
Q Consensus 246 ~~~k~~~~~~ey~~lL~~qle~qr~~~E--~~l~~l~~~~~~~l~~~~~~~----~~~~l~~l~~~l~~~~~e~~~l~el 319 (407)
+.+++...+.|++-+++..-..|...+. .....+..+. .......... +.+.-..|.++-.....-...++.+
T Consensus 226 ~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql-~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~ 304 (629)
T KOG0963|consen 226 YDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQL-AKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERL 304 (629)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 015426 320 NENLLKNQEMWKAKISEIEEREKMALRAKDDKIQDSEAQ 358 (407)
Q Consensus 320 n~~l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq 358 (407)
..++.+..+.|..++..++.+++......++--+.|+.+
T Consensus 305 ~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~ 343 (629)
T KOG0963|consen 305 EASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR 343 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 389
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=43.43 E-value=2.5e+02 Score=25.38 Aligned_cols=45 Identities=20% Similarity=0.387 Sum_probs=24.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 015426 318 DLNENLLKNQEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDLMAYL 366 (407)
Q Consensus 318 eln~~l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dLm~~l 366 (407)
.....+.+....+.....++. ..+......|..|+.++.++..-+
T Consensus 135 ~f~~~l~~D~~~l~~~~~~l~----~~l~~~~g~I~~L~~~I~~~~~~I 179 (184)
T PF05791_consen 135 DFKDKLQKDSRNLKTDVDELQ----SILAGENGDIPQLQKQIENLNEEI 179 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHTT--HHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHHhHHHHH----HHHhcccCCHHHHHHHHHHHHHHH
Confidence 344455555555555444433 344445567778888887765544
No 390
>PLN02320 seryl-tRNA synthetase
Probab=43.32 E-value=2.1e+02 Score=30.46 Aligned_cols=23 Identities=9% Similarity=0.029 Sum_probs=11.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHH
Q 015426 343 MALRAKDDKIQDSEAQLRDLMAY 365 (407)
Q Consensus 343 ~~~~~~~~~i~~Leeq~~dLm~~ 365 (407)
..+..+++++.++++++.+++..
T Consensus 144 ~~i~~le~~~~~~~~~l~~~~l~ 166 (502)
T PLN02320 144 EGLVTLEEDLVKLTDELQLEAQS 166 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444555566666655544
No 391
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=43.30 E-value=2.9e+02 Score=26.11 Aligned_cols=18 Identities=11% Similarity=0.307 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 015426 298 KLQKMQAKLDRCVREKKF 315 (407)
Q Consensus 298 ~l~~l~~~l~~~~~e~~~ 315 (407)
-+.++....+.|..|+.+
T Consensus 33 ~L~e~~kE~~~L~~Er~~ 50 (230)
T PF10146_consen 33 CLEEYRKEMEELLQERMA 50 (230)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444555555555544
No 392
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=43.21 E-value=1.4e+02 Score=22.24 Aligned_cols=10 Identities=10% Similarity=0.341 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 015426 351 KIQDSEAQLR 360 (407)
Q Consensus 351 ~i~~Leeq~~ 360 (407)
+|..|++++.
T Consensus 47 ei~~L~~e~e 56 (61)
T PF08826_consen 47 EIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333444433
No 393
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=43.10 E-value=2.2e+02 Score=24.56 Aligned_cols=9 Identities=11% Similarity=0.324 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 015426 351 KIQDSEAQL 359 (407)
Q Consensus 351 ~i~~Leeq~ 359 (407)
+|.+|..|+
T Consensus 126 qv~~~~~~~ 134 (141)
T PRK08476 126 QMPEFKEAL 134 (141)
T ss_pred hHHHHHHHH
Confidence 444444444
No 394
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=43.04 E-value=1.8e+02 Score=23.54 Aligned_cols=49 Identities=20% Similarity=0.346 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 015426 316 LDDLNENLLKNQEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDLMAY 365 (407)
Q Consensus 316 l~eln~~l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dLm~~ 365 (407)
+.++-..+..+.+.+..+.+++..-++ .+..-+++|..|++-+..|=.|
T Consensus 40 ~~~~~~~l~~~~~~l~~k~~~l~~~l~-~Id~Ie~~V~~LE~~v~~LD~y 88 (99)
T PF10046_consen 40 MKDIAAGLEKNLEDLNQKYEELQPYLQ-QIDQIEEQVTELEQTVYELDEY 88 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444332222 1222333444454444444444
No 395
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=42.82 E-value=1.7e+02 Score=30.43 Aligned_cols=41 Identities=24% Similarity=0.558 Sum_probs=26.4
Q ss_pred chhccccccC----CCCCCcccccCCCCccceeecccCCCcccccccCccccccCC
Q 015426 121 HCSCISKWTD----SSCPVCRYCQQQPEKSICFVCQTSENLWMCVICGFVGCGRYK 172 (407)
Q Consensus 121 ~~~Cl~~w~~----~~CP~Cr~~~~~~~~~~C~~C~~~~~l~~Cl~Cg~~~Cgr~~ 172 (407)
+..-+.+|.+ .-||.|-.+|. .+..-.-|-.||-++|..|.
T Consensus 167 ~EqsvVpW~DDs~V~~CP~Ca~~F~-----------l~rRrHHCRLCG~VmC~~C~ 211 (505)
T KOG1842|consen 167 LEQSVVPWLDDSSVQFCPECANSFG-----------LTRRRHHCRLCGRVMCRDCS 211 (505)
T ss_pred HHhccccccCCCcccccccccchhh-----------hHHHhhhhhhcchHHHHHHH
Confidence 3444567865 45888877764 22333458889999986553
No 396
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=42.73 E-value=27 Score=22.09 Aligned_cols=37 Identities=16% Similarity=0.431 Sum_probs=23.5
Q ss_pred cccccccccccCCCceeeecCCCccchhccccccCCCCCCccccc
Q 015426 96 SCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQ 140 (407)
Q Consensus 96 ~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~ 140 (407)
.|+.|...+..+. .....=+..||..| ..|..|...+
T Consensus 1 ~C~~C~~~i~~~~--~~~~~~~~~~H~~C------f~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGE--LVLRALGKVWHPEC------FKCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCc--EEEEeCCccccccC------CCCcccCCcC
Confidence 4788888776531 22333467888888 4677776654
No 397
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=42.42 E-value=2.2e+02 Score=24.34 Aligned_cols=40 Identities=13% Similarity=0.259 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 015426 327 QEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDLMAYL 366 (407)
Q Consensus 327 ~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dLm~~l 366 (407)
+..+..++++..+.+.+.+..+..+...+..++.+|...|
T Consensus 79 ~~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~L 118 (131)
T KOG1760|consen 79 LDKLQDQLEEKKETLEKEIEELESELESISARMDELKKVL 118 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555565555444
No 398
>PRK09343 prefoldin subunit beta; Provisional
Probab=42.32 E-value=2.1e+02 Score=24.10 Aligned_cols=14 Identities=14% Similarity=0.662 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHH
Q 015426 350 DKIQDSEAQLRDLM 363 (407)
Q Consensus 350 ~~i~~Leeq~~dLm 363 (407)
+++.+++.+++.+.
T Consensus 99 ~~l~e~q~~l~~ll 112 (121)
T PRK09343 99 EKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555544
No 399
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=42.25 E-value=18 Score=23.19 Aligned_cols=10 Identities=40% Similarity=1.391 Sum_probs=5.1
Q ss_pred CcccccccCc
Q 015426 156 NLWMCVICGF 165 (407)
Q Consensus 156 ~l~~Cl~Cg~ 165 (407)
..|.|.+||.
T Consensus 16 ~~~~CP~Cg~ 25 (33)
T cd00350 16 APWVCPVCGA 25 (33)
T ss_pred CCCcCcCCCC
Confidence 4455555553
No 400
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=42.16 E-value=39 Score=29.39 Aligned_cols=55 Identities=11% Similarity=0.246 Sum_probs=43.2
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCC-CCeeEEEEeccChhhHhhHhhhcCCccc
Q 015426 1 MTYADFCQFCASFIQHILEMRIVRTDGM-DDQYSVLIRFDSQDSADKFYQHFNGRQF 56 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~-~~~y~vll~f~~~~~a~~f~~~~~g~~f 56 (407)
+|..|+..++.+|- .|.+++|+++..+ ..+-...+.|.+.++|..-...+|+..+
T Consensus 46 ~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i 101 (144)
T PLN03134 46 TDDASLRDAFAHFG-DVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKEL 101 (144)
T ss_pred CCHHHHHHHHhcCC-CeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 46678888888864 7899999984322 2456788999999999999999998744
No 401
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=42.04 E-value=4.2e+02 Score=27.48 Aligned_cols=71 Identities=14% Similarity=0.115 Sum_probs=31.4
Q ss_pred ChhHHhHhhHHHHH-hhheeEEEee------CCCCCeeEEEEeccChhhHhhHhhhcCCcccccCCCceeEEEEEeeEEE
Q 015426 2 TYADFCQFCASFIQ-HILEMRIVRT------DGMDDQYSVLIRFDSQDSADKFYQHFNGRQFNSLEEEVCHVLFTVDVQF 74 (407)
Q Consensus 2 ~~~d~~~f~~~~~~-~i~~~r~ir~------~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~~l~~~~c~~v~v~~v~~ 74 (407)
|..++-.++-..++ ++..+.|.=+ ..+.+-|.=|--=.++..|.=|...+..-.|..-+ .-.|+...+|.|
T Consensus 1 sVsel~~~ik~~le~~~~~v~V~GEisn~~~~~sGH~YFtLkD~~a~i~~vmf~~~~~~l~f~~~~--G~~V~v~g~v~~ 78 (432)
T TIGR00237 1 SVSELNAQIKALLEATFLQVWIQGEISNFTQPVSGHWYFTLKDENAQVRCVMFRGNNNRLKFRPQN--GQQVLVRGGISV 78 (432)
T ss_pred CHHHHHHHHHHHHHhhCCcEEEEEEecCCeeCCCceEEEEEEcCCcEEEEEEEcChhhCCCCCCCC--CCEEEEEEEEEE
Confidence 34555566666555 3555555422 22223444443333444454444444333454322 234444444544
No 402
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=42.02 E-value=3e+02 Score=27.18 Aligned_cols=66 Identities=20% Similarity=0.361 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-----------HHHHHHHHHHhH
Q 015426 302 MQAKLDRCVREKKF-LDDLNENLLKNQEMWKAKISEIEEREKMALRAKDDKIQDS-----------EAQLRDLMAYLE 367 (407)
Q Consensus 302 l~~~l~~~~~e~~~-l~eln~~l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~L-----------eeq~~dLm~~l~ 367 (407)
|+...+.-.+.+.. +.+|...|.+....|...+..+.++.-..+..-+++..+| ++|+-+|..-|.
T Consensus 176 lkee~d~S~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL~aRqkkAeeLkrltd~A~~MsE~Ql~ELRadIK 253 (302)
T PF07139_consen 176 LKEEMDSSIKKIKQTFAELQSCLMDREVALLAEMDKVKAEAMEILDARQKKAEELKRLTDRASQMSEEQLAELRADIK 253 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
No 403
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=41.89 E-value=14 Score=22.54 Aligned_cols=9 Identities=33% Similarity=0.833 Sum_probs=5.3
Q ss_pred CCCCccccc
Q 015426 132 SCPVCRYCQ 140 (407)
Q Consensus 132 ~CP~Cr~~~ 140 (407)
.||.|+..+
T Consensus 2 ~CP~C~~~V 10 (26)
T PF10571_consen 2 TCPECGAEV 10 (26)
T ss_pred cCCCCcCCc
Confidence 466666654
No 404
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=41.51 E-value=2.3e+02 Score=24.40 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=10.2
Q ss_pred HHHhhhHHHHHHHHHHHHH
Q 015426 344 ALRAKDDKIQDSEAQLRDL 362 (407)
Q Consensus 344 ~~~~~~~~i~~Leeq~~dL 362 (407)
.+..+..+|..|..+++.|
T Consensus 110 dv~~L~~rId~L~~~v~~l 128 (132)
T PF05597_consen 110 DVEALSARIDQLTAQVERL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555566666555
No 405
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=40.82 E-value=5e+02 Score=28.50 Aligned_cols=19 Identities=26% Similarity=0.169 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 015426 268 QKIYYETLLQEAKEETEKI 286 (407)
Q Consensus 268 qr~~~E~~l~~l~~~~~~~ 286 (407)
+...+..++..+.++.+..
T Consensus 326 eaq~l~~~L~~~~~e~~~~ 344 (632)
T PF14817_consen 326 EAQALSQRLQRLLEEIERR 344 (632)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555555555544443
No 406
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=40.74 E-value=4.8e+02 Score=27.79 Aligned_cols=19 Identities=16% Similarity=0.120 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 015426 260 LLAAQLENQKIYYETLLQE 278 (407)
Q Consensus 260 lL~~qle~qr~~~E~~l~~ 278 (407)
++.++++.-..|+..-|..
T Consensus 305 ~e~sk~eeL~~~L~~~lea 323 (531)
T PF15450_consen 305 LEESKAEELATKLQENLEA 323 (531)
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 3445555444444444443
No 407
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=40.71 E-value=1.2e+02 Score=29.27 Aligned_cols=18 Identities=28% Similarity=0.641 Sum_probs=12.4
Q ss_pred HHhhhHHHHHHHHHHHHH
Q 015426 345 LRAKDDKIQDSEAQLRDL 362 (407)
Q Consensus 345 ~~~~~~~i~~Leeq~~dL 362 (407)
+++-+++|++||.+++.|
T Consensus 241 I~rEeeEIreLE~k~~~L 258 (259)
T PF08657_consen 241 IRREEEEIRELERKKREL 258 (259)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 344445788888888775
No 408
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=40.69 E-value=3.6e+02 Score=26.37 Aligned_cols=7 Identities=14% Similarity=0.553 Sum_probs=2.6
Q ss_pred hhHhhhc
Q 015426 45 DKFYQHF 51 (407)
Q Consensus 45 ~~f~~~~ 51 (407)
.+|....
T Consensus 29 ~D~~~~~ 35 (319)
T PF02601_consen 29 QDFLRTL 35 (319)
T ss_pred HHHHHHH
Confidence 3333333
No 409
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=40.62 E-value=2.6e+02 Score=24.82 Aligned_cols=92 Identities=16% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 015426 272 YETLLQEAKEETEKIISEAVKKAIA------QKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREKMAL 345 (407)
Q Consensus 272 ~E~~l~~l~~~~~~~l~~~~~~~~~------~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~~~ 345 (407)
||..|...-.+....+-.-+-+++. .+.+.....+..+..+...|...-..-.........++.+++.......
T Consensus 12 fE~lId~~G~e~v~~LmP~VV~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~ 91 (158)
T PF09744_consen 12 FERLIDRYGEEAVKGLMPKVVRVLELLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQER 91 (158)
T ss_pred HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhHHHHHHHHHHHHHH
Q 015426 346 RAKDDKIQDSEAQLRDLM 363 (407)
Q Consensus 346 ~~~~~~i~~Leeq~~dLm 363 (407)
+....+|..|+++++.|.
T Consensus 92 k~L~~~v~~Le~e~r~L~ 109 (158)
T PF09744_consen 92 KDLQSQVEQLEEENRQLE 109 (158)
T ss_pred HHHHHHHHHHHHHHHHHH
No 410
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=40.56 E-value=2.7e+02 Score=24.81 Aligned_cols=21 Identities=33% Similarity=0.344 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 015426 261 LAAQLENQKIYYETLLQEAKE 281 (407)
Q Consensus 261 L~~qle~qr~~~E~~l~~l~~ 281 (407)
+..-|+..+.+..+.+.+.++
T Consensus 44 I~~~l~~R~~~I~~~l~~A~~ 64 (174)
T PRK07352 44 LGKILEERREAILQALKEAEE 64 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555443
No 411
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=40.28 E-value=1.4e+02 Score=21.52 Aligned_cols=20 Identities=30% Similarity=0.240 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHhHhH
Q 015426 350 DKIQDSEAQLRDLMAYLEAE 369 (407)
Q Consensus 350 ~~i~~Leeq~~dLm~~l~~~ 369 (407)
++|.+|+.+++.|..-|+-.
T Consensus 29 ~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 29 KRLSKLEGENRLLRAELERL 48 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57777888888877766543
No 412
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=40.22 E-value=6.9e+02 Score=29.54 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=15.6
Q ss_pred hhHHhHhhHHHHHhhheeEEEeeC
Q 015426 3 YADFCQFCASFIQHILEMRIVRTD 26 (407)
Q Consensus 3 ~~d~~~f~~~~~~~i~~~r~ir~~ 26 (407)
.++|+...-|++..|..+|+=++|
T Consensus 53 i~~fl~~~kp~v~~v~~lrl~~~D 76 (1317)
T KOG0612|consen 53 IAEFLNRYKPIVKKVKELRLKAED 76 (1317)
T ss_pred HHHHHHHhHHHHHHHHHHhCCHHh
Confidence 356777777777777777765443
No 413
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=40.11 E-value=1.9e+02 Score=25.08 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 015426 331 KAKISEIEEREKMALRAKDDKIQDSEAQLRD 361 (407)
Q Consensus 331 ~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~d 361 (407)
..++.++.+.........+.+|..|+..+..
T Consensus 27 ~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~ 57 (149)
T PF07352_consen 27 NDEIARIKEWYEAEIAPLQNRIEYLEGLLQA 57 (149)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555443
No 414
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=39.99 E-value=6.5e+02 Score=29.17 Aligned_cols=8 Identities=25% Similarity=0.451 Sum_probs=3.4
Q ss_pred HhHHHHhh
Q 015426 367 EAEKTLQQ 374 (407)
Q Consensus 367 ~~~~~~~~ 374 (407)
++++.++.
T Consensus 375 ~~e~~~es 382 (1174)
T KOG0933|consen 375 KAEELVES 382 (1174)
T ss_pred HHHHHHHH
Confidence 33444444
No 415
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=39.97 E-value=2.5e+02 Score=25.34 Aligned_cols=15 Identities=27% Similarity=0.375 Sum_probs=7.4
Q ss_pred hhHHHHHHHHHHHHH
Q 015426 348 KDDKIQDSEAQLRDL 362 (407)
Q Consensus 348 ~~~~i~~Leeq~~dL 362 (407)
++.++..|.+|...|
T Consensus 173 ~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 173 KEKEIEALKKQSEGL 187 (192)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455555555443
No 416
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=39.96 E-value=1.7e+02 Score=22.43 Aligned_cols=10 Identities=30% Similarity=0.537 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 015426 353 QDSEAQLRDL 362 (407)
Q Consensus 353 ~~Leeq~~dL 362 (407)
..++..+.+|
T Consensus 57 ~~~e~~~~~l 66 (74)
T PF12329_consen 57 EELEKELESL 66 (74)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 417
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.92 E-value=20 Score=37.29 Aligned_cols=101 Identities=17% Similarity=0.275 Sum_probs=0.0
Q ss_pred CCcccccccccccCCCceeeecCCCccchhccccccC-------C-----CCCCcccccCCCCccceeec----------
Q 015426 94 QPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD-------S-----SCPVCRYCQQQPEKSICFVC---------- 151 (407)
Q Consensus 94 ~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~-------~-----~CP~Cr~~~~~~~~~~C~~C---------- 151 (407)
...|.||.+-+.. ....+.|+|.||..|...... . .-+-|+..........=..-
T Consensus 70 ~~~c~ic~~~~~~---~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~i~~~~s~~~~~~ky~~~ 146 (444)
T KOG1815|consen 70 DVQCGICVESYDG---EIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDTVEKLVSDKEDKEKYQRY 146 (444)
T ss_pred cccCCcccCCCcc---hhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCceeeeecCCHHHHHHHHHH
Q ss_pred ------ccCCCcccccccCccccccCCccccccccccCCceeEeecCceeEEeccCCcchhh
Q 015426 152 ------QTSENLWMCVICGFVGCGRYKGGHAIIHWKETEHCYSLELETQRVWDYAGDNYVHR 207 (407)
Q Consensus 152 ------~~~~~l~~Cl~Cg~~~Cgr~~~~Ha~~H~~~t~H~~~~~l~~~~v~cy~cd~~vhr 207 (407)
.....+..|.. .+||+....| ....+.........||+.|...-|+
T Consensus 147 i~~syve~~~~lkwCP~---~~C~~av~~~-------~~~~~~v~C~~g~~FC~~C~~~~H~ 198 (444)
T KOG1815|consen 147 ILRSYVEDNVPLKWCPA---PGCGLAVKFG-------SLESVEVDCGCGHEFCFACGEESHS 198 (444)
T ss_pred HHHHHHhcCCccccCCC---CCCCceeecc-------CCCccceeCCCCchhHhhccccccC
No 418
>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional
Probab=39.59 E-value=15 Score=39.08 Aligned_cols=36 Identities=19% Similarity=0.376 Sum_probs=31.8
Q ss_pred CCCccceeecccCCCcccccccCccccccCCccccc
Q 015426 142 QPEKSICFVCQTSENLWMCVICGFVGCGRYKGGHAI 177 (407)
Q Consensus 142 ~~~~~~C~~C~~~~~l~~Cl~Cg~~~Cgr~~~~Ha~ 177 (407)
.+.+..|..|+.....|+|+..|.+.|.+|.+-|..
T Consensus 20 lPgNk~CADCgs~~P~WASiNlGIFICi~CSGIHRs 55 (648)
T PLN03119 20 LPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHRE 55 (648)
T ss_pred CcCCCccccCCCCCCCceeeccceEEeccchhhhcc
Confidence 467789999999999999999999999999887754
No 419
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=39.57 E-value=6.6e+02 Score=29.08 Aligned_cols=13 Identities=31% Similarity=0.595 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q 015426 351 KIQDSEAQLRDLM 363 (407)
Q Consensus 351 ~i~~Leeq~~dLm 363 (407)
+|..|+.+.+||.
T Consensus 364 rl~~l~~~~~~l~ 376 (1200)
T KOG0964|consen 364 RLAKLEQKQRDLL 376 (1200)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555544
No 420
>PF03992 ABM: Antibiotic biosynthesis monooxygenase; InterPro: IPR007138 This domain is found in monooxygenases involved in the biosynthesis of several antibiotics by Streptomyces species, which can carry out oxygenation without the assistance of any of the prosthetic groups, metal ions or cofactors normally associated with activation of molecular oxygen. The structure of ActVA-Orf6 monooxygenase from Streptomyces coelicolor (Q53908 from SWISSPROT), which is involved in actinorhodin biosynthesis, reveals a dimeric alpha+beta barrel topology []. There is also a conserved histidine that is likely to be an active site residue. In S. coelicolor SCO1909 (Q9X9W3 from SWISSPROT) this domain occurs as a repeat. This domain is also found in protein LsrG, involved in the degradation of quorum-sensing molecule autoinducer-2 [], and in several uncharacterised proteins.; PDB: 1X7V_A 3F44_A 4DN9_B 1N5T_B 1LQ9_A 1N5Q_B 1N5V_A 1N5S_A 2GFF_B 3BM7_A ....
Probab=39.48 E-value=1.2e+02 Score=22.08 Aligned_cols=35 Identities=14% Similarity=0.364 Sum_probs=28.0
Q ss_pred hhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhh
Q 015426 16 HILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQH 50 (407)
Q Consensus 16 ~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~ 50 (407)
......+.|....|+.|+++-.+.|.++-..+...
T Consensus 35 G~~~~~~~~~~~~~~~~~~~~~W~s~~a~~~~~~s 69 (78)
T PF03992_consen 35 GCLSYELYRSLDDPNRYVIVERWESEEAFQAHFKS 69 (78)
T ss_dssp TEEEEEEEEESSSTTEEEEEEEESSHHHHHHHHTS
T ss_pred CcEEEEEEEecCCCCEEEEEEEECCHHHHHHHHcC
Confidence 34578889988889999999999998776665543
No 421
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=39.42 E-value=5.7e+02 Score=28.32 Aligned_cols=19 Identities=21% Similarity=-0.069 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHhHhH
Q 015426 351 KIQDSEAQLRDLMAYLEAE 369 (407)
Q Consensus 351 ~i~~Leeq~~dLm~~l~~~ 369 (407)
.+.+|+++.+.+-.-++.-
T Consensus 545 ~~~~le~~~~a~qat~d~a 563 (961)
T KOG4673|consen 545 LAAALEAQALAEQATNDEA 563 (961)
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 4555555555555544433
No 422
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=39.37 E-value=1.9e+02 Score=29.86 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=14.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhHh
Q 015426 345 LRAKDDKIQDSEAQLRDLMAYLEA 368 (407)
Q Consensus 345 ~~~~~~~i~~Leeq~~dLm~~l~~ 368 (407)
.+...++|.+|++++..+-.-+..
T Consensus 78 ~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 78 LKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445777777777776655433
No 423
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=39.28 E-value=2.9e+02 Score=24.85 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 015426 261 LAAQLENQKIYYETLLQEAK 280 (407)
Q Consensus 261 L~~qle~qr~~~E~~l~~l~ 280 (407)
+..-|+..+.+..+.+.+.+
T Consensus 49 I~~~l~~R~~~I~~~l~~Ae 68 (184)
T CHL00019 49 LSDLLDNRKQTILNTIRNSE 68 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554443
No 424
>PTZ00464 SNF-7-like protein; Provisional
Probab=39.25 E-value=3.2e+02 Score=25.45 Aligned_cols=15 Identities=33% Similarity=0.508 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 015426 351 KIQDSEAQLRDLMAY 365 (407)
Q Consensus 351 ~i~~Leeq~~dLm~~ 365 (407)
.|.+|..+++|.|.+
T Consensus 125 ~Vd~l~Dei~E~~e~ 139 (211)
T PTZ00464 125 KVEDLQDELADLYED 139 (211)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 425
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=39.18 E-value=2.5e+02 Score=24.16 Aligned_cols=14 Identities=14% Similarity=0.204 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHh
Q 015426 353 QDSEAQLRDLMAYL 366 (407)
Q Consensus 353 ~~Leeq~~dLm~~l 366 (407)
.+|+.|+.+|-..+
T Consensus 121 ~~l~~qv~~~~~~~ 134 (141)
T PRK08476 121 EQLLSQMPEFKEAL 134 (141)
T ss_pred HHHHHhHHHHHHHH
Confidence 44566666555443
No 426
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=39.17 E-value=1.4e+02 Score=21.12 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=13.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHH
Q 015426 342 KMALRAKDDKIQDSEAQLRDLMA 364 (407)
Q Consensus 342 ~~~~~~~~~~i~~Leeq~~dLm~ 364 (407)
+.....++.+|++|++-+..|..
T Consensus 13 e~~~~~k~~~v~eLe~YiD~LL~ 35 (48)
T PF09457_consen 13 EEENARKDSRVRELEDYIDNLLV 35 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666667766666543
No 427
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=39.06 E-value=7.1e+02 Score=29.33 Aligned_cols=12 Identities=17% Similarity=0.260 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHH
Q 015426 352 IQDSEAQLRDLM 363 (407)
Q Consensus 352 i~~Leeq~~dLm 363 (407)
++.|..++.||.
T Consensus 335 ~~~l~~~IAdlR 346 (1109)
T PRK10929 335 PQQLDTEMAQLR 346 (1109)
T ss_pred cchhHHHHHHHH
Confidence 345566666655
No 428
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=38.99 E-value=3.1e+02 Score=25.21 Aligned_cols=43 Identities=23% Similarity=0.289 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015426 249 KVEAIVNEYNELLAAQLENQKIYYETLLQEAKEETEKIISEAVK 292 (407)
Q Consensus 249 k~~~~~~ey~~lL~~qle~qr~~~E~~l~~l~~~~~~~l~~~~~ 292 (407)
-.++-..||..+|...+|+.|..|-...+.+..+. ..|+.-++
T Consensus 100 E~~~~~~e~~e~l~km~EslRi~~~~e~~k~~~Re-~~iak~m~ 142 (225)
T KOG4848|consen 100 EFNNAKKEYKELLKKMRESLRILYTKEPEKFTFRE-AEIAKNMK 142 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHH
Confidence 34666789999999999999988877766665433 34444333
No 429
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=38.97 E-value=2.1e+02 Score=23.13 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=7.7
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q 015426 319 LNENLLKNQEMWKAKISEIE 338 (407)
Q Consensus 319 ln~~l~~~~~~l~~kl~~~~ 338 (407)
+-..|.+..+.+..+++...
T Consensus 51 l~~~L~~~e~~ll~~l~~~~ 70 (127)
T smart00502 51 LRNALNKRKKQLLEDLEEQK 70 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444433
No 430
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=38.94 E-value=2.3e+02 Score=23.72 Aligned_cols=19 Identities=26% Similarity=0.407 Sum_probs=11.1
Q ss_pred HHHhhhHHHHHHHHHHHHH
Q 015426 344 ALRAKDDKIQDSEAQLRDL 362 (407)
Q Consensus 344 ~~~~~~~~i~~Leeq~~dL 362 (407)
.+.....+|..|+.++++|
T Consensus 97 ev~~L~~RI~~Le~~l~~l 115 (118)
T TIGR01837 97 EIEALSAKIEQLAVQVEEL 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445666677666665
No 431
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=38.91 E-value=15 Score=32.96 Aligned_cols=11 Identities=45% Similarity=1.177 Sum_probs=8.1
Q ss_pred CCCCCcccccC
Q 015426 131 SSCPVCRYCQQ 141 (407)
Q Consensus 131 ~~CP~Cr~~~~ 141 (407)
..||+|-+.+-
T Consensus 135 ~vC~vCGy~~~ 145 (166)
T COG1592 135 WVCPVCGYTHE 145 (166)
T ss_pred EEcCCCCCccc
Confidence 57888887664
No 432
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=38.85 E-value=3.3e+02 Score=25.42 Aligned_cols=12 Identities=33% Similarity=0.554 Sum_probs=4.6
Q ss_pred hHHHHHHHHHHH
Q 015426 349 DDKIQDSEAQLR 360 (407)
Q Consensus 349 ~~~i~~Leeq~~ 360 (407)
+..|+.|+.++.
T Consensus 87 D~~IQqLqk~LK 98 (272)
T KOG4552|consen 87 DEVIQQLQKNLK 98 (272)
T ss_pred HHHHHHHHHHHH
Confidence 333333443333
No 433
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=38.62 E-value=3.2e+02 Score=25.13 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=12.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHH
Q 015426 344 ALRAKDDKIQDSEAQLRDLMAY 365 (407)
Q Consensus 344 ~~~~~~~~i~~Leeq~~dLm~~ 365 (407)
.+....+++.+|+.....|+.-
T Consensus 109 eV~~Y~~KL~eLE~kq~~L~rE 130 (195)
T PF10226_consen 109 EVAQYQQKLKELEDKQEELIRE 130 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666666655555543
No 434
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=38.11 E-value=2.2e+02 Score=23.11 Aligned_cols=15 Identities=20% Similarity=0.410 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 015426 350 DKIQDSEAQLRDLMA 364 (407)
Q Consensus 350 ~~i~~Leeq~~dLm~ 364 (407)
..+.+|+.++.++..
T Consensus 84 ~~~~~l~~~~~elk~ 98 (105)
T cd00632 84 RQEEDLQEKLKELQE 98 (105)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 435
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=38.11 E-value=5.4e+02 Score=28.88 Aligned_cols=105 Identities=17% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015426 261 LAAQLENQKIYYETLLQEAKEETEKIISEAVKKAIAQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEER 340 (407)
Q Consensus 261 L~~qle~qr~~~E~~l~~l~~~~~~~l~~~~~~~~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~ 340 (407)
|..++..|+. -+.++.+..++....+. ...++.--..+..-++.+..+.....+-...|....+.++.++.+...+
T Consensus 525 LEqr~~qQqs-a~~Ll~~f~kr~~~~l~---ae~lE~~~~e~eal~E~ls~~~s~~~EqR~~lRq~~e~L~~~~~~~~~~ 600 (1480)
T COG3096 525 LEQRLRQQQS-AERLLADFCKRQGKNLD---AEELEALHQELEALIESLSDSVSNAREQRMALRQEQEQLQSRIQSLMQR 600 (1480)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhcccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred H------HHHHHhhhHHHHHHHHHHHHHHHHhHhH
Q 015426 341 E------KMALRAKDDKIQDSEAQLRDLMAYLEAE 369 (407)
Q Consensus 341 ~------~~~~~~~~~~i~~Leeq~~dLm~~l~~~ 369 (407)
. ..+++...++-.+--+.-+|+|.|++.+
T Consensus 601 AP~Wl~Aq~ALe~L~eQSGe~~~dSq~V~~~MQ~~ 635 (1480)
T COG3096 601 APVWLAAQNALEQLSEQSGEEFTDSQDVTEYMQQL 635 (1480)
T ss_pred ccHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHH
No 436
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=38.03 E-value=2.5e+02 Score=23.84 Aligned_cols=10 Identities=30% Similarity=0.594 Sum_probs=0.0
Q ss_pred CcEEeecCCC
Q 015426 383 DGTVLPMSVE 392 (407)
Q Consensus 383 ~G~v~~~~~~ 392 (407)
++.|++.+..
T Consensus 72 d~~iip~~~~ 81 (121)
T PF03310_consen 72 DKQIIPSPEE 81 (121)
T ss_dssp ----------
T ss_pred CCCcCCCCCC
Confidence 5555544333
No 437
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=37.99 E-value=4.1e+02 Score=26.31 Aligned_cols=7 Identities=29% Similarity=0.567 Sum_probs=3.1
Q ss_pred HHHHhHh
Q 015426 362 LMAYLEA 368 (407)
Q Consensus 362 Lm~~l~~ 368 (407)
+..+|+.
T Consensus 110 VKqWLEE 116 (351)
T PF07058_consen 110 VKQWLEE 116 (351)
T ss_pred HHHHHHH
Confidence 3445543
No 438
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=37.96 E-value=2.1e+02 Score=30.13 Aligned_cols=13 Identities=8% Similarity=-0.046 Sum_probs=7.0
Q ss_pred hhhHHHHHHHHHH
Q 015426 347 AKDDKIQDSEAQL 359 (407)
Q Consensus 347 ~~~~~i~~Leeq~ 359 (407)
.++.+|..|++|+
T Consensus 108 eLEaE~~~Lk~Ql 120 (475)
T PRK13729 108 KLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHH
Confidence 3344555566665
No 439
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=37.76 E-value=13 Score=26.40 Aligned_cols=40 Identities=20% Similarity=0.556 Sum_probs=18.4
Q ss_pred CcccccccccccCCCceeeecCCCccchhccccc-------cCCCCCCccc
Q 015426 95 PSCPVCLERLDQDTSGILTTICNHSFHCSCISKW-------TDSSCPVCRY 138 (407)
Q Consensus 95 ~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w-------~~~~CP~Cr~ 138 (407)
+.||+...++.. ..+...|.|.-|.+= ..| ....||+|.+
T Consensus 3 L~CPls~~~i~~---P~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 3 LRCPLSFQRIRI---PVRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNK 49 (50)
T ss_dssp SB-TTTSSB-SS---EEEETT--SS--EEH-HHHHHHHHHS---B-TTT--
T ss_pred eeCCCCCCEEEe---CccCCcCcccceECH-HHHHHHhhccCCeECcCCcC
Confidence 579999988875 235778998755332 122 1267998875
No 440
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=37.66 E-value=5.1e+02 Score=27.23 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=19.1
Q ss_pred hHHHHHhhheeEEEeeCC----CCCeeEEEEe
Q 015426 10 CASFIQHILEMRIVRTDG----MDDQYSVLIR 37 (407)
Q Consensus 10 ~~~~~~~i~~~r~ir~~~----~~~~y~vll~ 37 (407)
+.|.+.+|+.+||+|--+ .-||+-+|-+
T Consensus 227 I~PvVCnVEQVRiLRgLGAIQPGVNRCKLi~~ 258 (641)
T KOG3915|consen 227 ITPVVCNVEQVRILRGLGAIQPGVNRCKLISR 258 (641)
T ss_pred eeeeeechHHHHHHhccccccCCccceeeeec
Confidence 457788889999988532 3477766543
No 441
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=37.45 E-value=1.8e+02 Score=22.04 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015426 300 QKMQAKLDRCVREKKFLDDLNENLLK 325 (407)
Q Consensus 300 ~~l~~~l~~~~~e~~~l~eln~~l~~ 325 (407)
..|+.+++.+......-...++.|..
T Consensus 8 ~~Lr~rLd~~~rk~~~~~~~~k~L~~ 33 (69)
T PF14197_consen 8 ATLRNRLDSLTRKNSVHEIENKRLRR 33 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433344444443
No 442
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=37.39 E-value=5.4e+02 Score=29.79 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015426 249 KVEAIVNEYNELLAAQLENQKIYYETLLQEAKE 281 (407)
Q Consensus 249 k~~~~~~ey~~lL~~qle~qr~~~E~~l~~l~~ 281 (407)
-+..+-..+.+--.+.||.||..||..++.|+.
T Consensus 584 ~~~~le~qheEeKr~ALE~Qr~~yE~~~eqLr~ 616 (1714)
T KOG0241|consen 584 VVQSLEKQHEEEKRSALEEQRLMYERELEQLRQ 616 (1714)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555566666779999999999999999986
No 443
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.36 E-value=17 Score=34.75 Aligned_cols=49 Identities=20% Similarity=0.301 Sum_probs=37.8
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhccccccCCCCCCcccccC
Q 015426 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQQ 141 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~ 141 (407)
-...|||=--.|...-.=..+.+|||.|-..-+.....+.|++|...+.
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeikas~C~~C~a~y~ 158 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKASVCHVCGAAYQ 158 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhhhccccccCCccc
Confidence 4567998776665322223478999999999998888899999998875
No 444
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=37.27 E-value=3.5e+02 Score=25.21 Aligned_cols=18 Identities=28% Similarity=0.591 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 015426 249 KVEAIVNEYNELLAAQLE 266 (407)
Q Consensus 249 k~~~~~~ey~~lL~~qle 266 (407)
++..+..+|...+...++
T Consensus 41 ~m~~i~~e~Ek~i~~~i~ 58 (207)
T PF05010_consen 41 EMRKIMEEYEKTIAQMIE 58 (207)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555566665554443
No 445
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=37.27 E-value=4.2e+02 Score=26.40 Aligned_cols=9 Identities=44% Similarity=0.671 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 015426 351 KIQDSEAQL 359 (407)
Q Consensus 351 ~i~~Leeq~ 359 (407)
.+..|+++.
T Consensus 299 ~~~~l~~~~ 307 (344)
T PF12777_consen 299 QIEELEEQL 307 (344)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 333344333
No 446
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=37.21 E-value=1.9e+02 Score=22.17 Aligned_cols=35 Identities=20% Similarity=0.241 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 015426 298 KLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKA 332 (407)
Q Consensus 298 ~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~ 332 (407)
.+..|+.+++.+.++...+.+-+..|....+.++.
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~ 53 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555544444443
No 447
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=37.21 E-value=48 Score=32.68 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=43.0
Q ss_pred ChhHHhHhhHHHHHhhheeEEEeeC-CCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015426 2 TYADFCQFCASFIQHILEMRIVRTD-GMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 2 ~~~d~~~f~~~~~~~i~~~r~ir~~-~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+-.|+..+..+| ..|..+||+++. ....+-...+.|.+.++|..=...+||..|.
T Consensus 282 ~e~~L~~~F~~f-G~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~ 337 (352)
T TIGR01661 282 DETVLWQLFGPF-GAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLG 337 (352)
T ss_pred CHHHHHHHHHhC-CCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEEC
Confidence 456777888777 468899999953 2234556889999999999999999998764
No 448
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.14 E-value=19 Score=35.00 Aligned_cols=34 Identities=24% Similarity=0.607 Sum_probs=23.7
Q ss_pred CCCCcccccccccccCCCceeee--cCCCccchhcccc
Q 015426 92 TEQPSCPVCLERLDQDTSGILTT--ICNHSFHCSCISK 127 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~--~C~H~F~~~Cl~~ 127 (407)
...+.|.+|.|+|.++ +.+.. .=.|.||..|-..
T Consensus 266 ~apLcCTLC~ERLEDT--HFVQCPSVp~HKFCFPCSRe 301 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDT--HFVQCPSVPSHKFCFPCSRE 301 (352)
T ss_pred CCceeehhhhhhhccC--ceeecCCCcccceecccCHH
Confidence 3568999999999972 23321 2358999998544
No 449
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=37.07 E-value=15 Score=31.93 Aligned_cols=33 Identities=33% Similarity=0.763 Sum_probs=24.6
Q ss_pred CCCccceeecccCCCcccccccCccccc-cCCccc
Q 015426 142 QPEKSICFVCQTSENLWMCVICGFVGCG-RYKGGH 175 (407)
Q Consensus 142 ~~~~~~C~~C~~~~~l~~Cl~Cg~~~Cg-r~~~~H 175 (407)
.|....|.+|| -...+.|..||.-.|. +|...|
T Consensus 115 KP~r~fCaVCG-~~S~ysC~~CG~kyCsv~C~~~H 148 (156)
T KOG3362|consen 115 KPLRKFCAVCG-YDSKYSCVNCGTKYCSVRCLKTH 148 (156)
T ss_pred CCcchhhhhcC-CCchhHHHhcCCceeechhhhhc
Confidence 35667899999 5567789999999886 455544
No 450
>smart00361 RRM_1 RNA recognition motif.
Probab=36.95 E-value=58 Score=24.17 Aligned_cols=54 Identities=22% Similarity=0.340 Sum_probs=36.7
Q ss_pred hHHhHhhH----HHHHhhheeE-EEeeCCC---CCeeEEEEeccChhhHhhHhhhcCCccccc
Q 015426 4 ADFCQFCA----SFIQHILEMR-IVRTDGM---DDQYSVLIRFDSQDSADKFYQHFNGRQFNS 58 (407)
Q Consensus 4 ~d~~~f~~----~~~~~i~~~r-~ir~~~~---~~~y~vll~f~~~~~a~~f~~~~~g~~f~~ 58 (407)
.||..|+. .| ..|..+. |+....+ ..+--+.+.|.+.++|......+||+.|..
T Consensus 3 ~~l~~~~~~~~~~f-G~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~g 64 (70)
T smart00361 3 EDFEREFSEEEEYF-GEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDG 64 (70)
T ss_pred hhHHHHHHHHHHhc-CCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 35666666 33 3566664 5553211 134458999999999999999999997643
No 451
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=36.81 E-value=8.6 Score=37.55 Aligned_cols=44 Identities=20% Similarity=0.384 Sum_probs=15.2
Q ss_pred CCCcccccccccccCCCceeee---cCCCccchhccccccC--CCCCCccc
Q 015426 93 EQPSCPVCLERLDQDTSGILTT---ICNHSFHCSCISKWTD--SSCPVCRY 138 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~---~C~H~F~~~Cl~~w~~--~~CP~Cr~ 138 (407)
....||||-..-.-+. +... .--+.+|.-|-..|.- ..||.|-.
T Consensus 171 ~~g~CPvCGs~P~~s~--l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSV--LRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp T-SS-TTT---EEEEE--EE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred cCCcCCCCCCcCceEE--EecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 3468999976533210 0000 0123455666667742 55666654
No 452
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=36.77 E-value=2.6e+02 Score=23.68 Aligned_cols=10 Identities=30% Similarity=0.248 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 015426 353 QDSEAQLRDL 362 (407)
Q Consensus 353 ~~Leeq~~dL 362 (407)
..|+.|.++|
T Consensus 87 ~tLekQe~~l 96 (119)
T COG1382 87 KTLEKQEEKL 96 (119)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 453
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=36.77 E-value=3.5e+02 Score=29.22 Aligned_cols=85 Identities=14% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHhhhHHHHHHHHHHHHHHHHhHhHHHHh
Q 015426 297 QKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEERE---KMALRAKDDKIQDSEAQLRDLMAYLEAEKTLQ 373 (407)
Q Consensus 297 ~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~---~~~~~~~~~~i~~Leeq~~dLm~~l~~~~~~~ 373 (407)
.....|--.-..+.+-+++|.=+...|....+.|.-.-.-+..++ +.+..+++++|++|+|.++.+..-+.....-.
T Consensus 301 rEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~ 380 (832)
T KOG2077|consen 301 REVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKA 380 (832)
T ss_pred HHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred hhccccCC
Q 015426 374 QLSISNEI 381 (407)
Q Consensus 374 ~~~~~~ei 381 (407)
.-..+++|
T Consensus 381 ~~~e~ddi 388 (832)
T KOG2077|consen 381 KDDEDDDI 388 (832)
T ss_pred cccccccc
No 454
>COG5613 Uncharacterized conserved protein [Function unknown]
Probab=36.72 E-value=4.6e+02 Score=26.50 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 015426 326 NQEMWKAKISEIEEREKMALRA 347 (407)
Q Consensus 326 ~~~~l~~kl~~~~~~~~~~~~~ 347 (407)
.+..|...+++++++++-.++.
T Consensus 345 d~~~Lq~iierlkeelk~e~e~ 366 (400)
T COG5613 345 DVQNLQRIIERLKEELKLELEK 366 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555554444433
No 455
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=36.70 E-value=3.7e+02 Score=26.95 Aligned_cols=69 Identities=13% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHHH
Q 015426 293 KAIAQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREKMA----LRAKDDKIQDSEAQLRD 361 (407)
Q Consensus 293 ~~~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~~----~~~~~~~i~~Leeq~~d 361 (407)
..+.+..++|+...+.-.+.++.+..+...-......-+.+++++...+++. -....+.|++|++++.+
T Consensus 7 ~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~ 79 (330)
T PF07851_consen 7 EELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKE 79 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
No 456
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=36.68 E-value=7.2e+02 Score=28.74 Aligned_cols=13 Identities=23% Similarity=0.511 Sum_probs=9.6
Q ss_pred CCCcccccccccc
Q 015426 93 EQPSCPVCLERLD 105 (407)
Q Consensus 93 e~~~C~iCle~~~ 105 (407)
....|+|||-.-.
T Consensus 56 SSiVcAIcLglgG 68 (1072)
T KOG0979|consen 56 SSIVCAICLGLGG 68 (1072)
T ss_pred hHHHHHHHHHcCC
Confidence 4577999987644
No 457
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=36.65 E-value=31 Score=24.86 Aligned_cols=19 Identities=32% Similarity=0.697 Sum_probs=14.9
Q ss_pred eeee-cCCCccchhcccccc
Q 015426 111 ILTT-ICNHSFHCSCISKWT 129 (407)
Q Consensus 111 ~~~~-~C~H~F~~~Cl~~w~ 129 (407)
.+.- .|++.||..|...|-
T Consensus 40 ~v~C~~C~~~fC~~C~~~~H 59 (64)
T smart00647 40 RVTCPKCGFSFCFRCKVPWH 59 (64)
T ss_pred eeECCCCCCeECCCCCCcCC
Confidence 3444 789999999998883
No 458
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=36.57 E-value=2e+02 Score=23.96 Aligned_cols=31 Identities=13% Similarity=0.143 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 015426 305 KLDRCVREKKFLDDLNENLLKNQEMWKAKIS 335 (407)
Q Consensus 305 ~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~ 335 (407)
.+..+...+..+-+-|..|.-..+.|++++.
T Consensus 23 el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 23 ELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444433333334333
No 459
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=36.23 E-value=3.1e+02 Score=24.35 Aligned_cols=20 Identities=10% Similarity=0.139 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 015426 261 LAAQLENQKIYYETLLQEAK 280 (407)
Q Consensus 261 L~~qle~qr~~~E~~l~~l~ 280 (407)
+..-|+..+.+..+.+.+.+
T Consensus 41 i~~~l~~R~~~I~~~l~~Ae 60 (173)
T PRK13460 41 ILKALDERASGVQNDINKAS 60 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 460
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=36.22 E-value=3.5e+02 Score=24.91 Aligned_cols=38 Identities=18% Similarity=0.307 Sum_probs=17.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 015426 322 NLLKNQEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDLM 363 (407)
Q Consensus 322 ~l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dLm 363 (407)
.....++..+.....|+.+ ....+.+++.|+.||+.|-
T Consensus 144 ~va~~Q~q~r~ea~aL~~e----~~aaqaQL~~lQ~qv~~Lq 181 (192)
T PF11180_consen 144 QVAARQQQARQEAQALEAE----RRAAQAQLRQLQRQVRQLQ 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433 2223334555666666554
No 461
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=36.06 E-value=4.5e+02 Score=26.20 Aligned_cols=9 Identities=11% Similarity=0.121 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 015426 352 IQDSEAQLR 360 (407)
Q Consensus 352 i~~Leeq~~ 360 (407)
.+-|.+++.
T Consensus 198 NRyL~erl~ 206 (319)
T PF09789_consen 198 NRYLKERLK 206 (319)
T ss_pred HHHHHHHHH
Confidence 344444443
No 462
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=35.67 E-value=5.7e+02 Score=27.24 Aligned_cols=21 Identities=14% Similarity=-0.008 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 015426 263 AQLENQKIYYETLLQEAKEET 283 (407)
Q Consensus 263 ~qle~qr~~~E~~l~~l~~~~ 283 (407)
..|-.++...+.+......+.
T Consensus 423 ~eLt~qlQ~adSKa~~f~~Ec 443 (518)
T PF10212_consen 423 EELTSQLQHADSKAVHFYAEC 443 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555554443
No 463
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=35.61 E-value=3.9e+02 Score=25.29 Aligned_cols=12 Identities=8% Similarity=0.418 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 015426 298 KLQKMQAKLDRC 309 (407)
Q Consensus 298 ~l~~l~~~l~~~ 309 (407)
.|+.+++.+..+
T Consensus 54 eLrqI~~DIn~l 65 (230)
T PF10146_consen 54 ELRQINQDINTL 65 (230)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 464
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=35.58 E-value=1.9e+02 Score=21.73 Aligned_cols=8 Identities=38% Similarity=0.634 Sum_probs=1.7
Q ss_pred HHHHHHHH
Q 015426 355 SEAQLRDL 362 (407)
Q Consensus 355 Leeq~~dL 362 (407)
|.++++++
T Consensus 44 L~~rl~~~ 51 (69)
T PF04102_consen 44 LRERLREL 51 (69)
T ss_dssp HHHT----
T ss_pred HHHHHHHh
Confidence 44444443
No 465
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=35.56 E-value=6.4e+02 Score=29.34 Aligned_cols=106 Identities=17% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 015426 253 IVNEYNELLAAQLENQKIYYETLLQEAKEETEKIISEAVKKAIAQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKA 332 (407)
Q Consensus 253 ~~~ey~~lL~~qle~qr~~~E~~l~~l~~~~~~~l~~~~~~~~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~ 332 (407)
|...-+.-++.+....+.-|+.++..+.-+.+=+-. +....+++.++..++++..+...++.-...+.+.....
T Consensus 767 ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~----~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-- 840 (1141)
T KOG0018|consen 767 IREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQ----KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-- 840 (1141)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheec----ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH--
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 015426 333 KISEIEEREKMALRAKDDKIQDSEAQLRDLMAYL 366 (407)
Q Consensus 333 kl~~~~~~~~~~~~~~~~~i~~Leeq~~dLm~~l 366 (407)
++++.+.++....++.++.+...++++|+--+
T Consensus 841 --~~~e~k~k~~~~~~~~e~~e~~k~~~~~~~~~ 872 (1141)
T KOG0018|consen 841 --EELEKKNKSKFEKKEDEINEVKKILRRLVKEL 872 (1141)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 466
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=35.44 E-value=2.2e+02 Score=31.24 Aligned_cols=64 Identities=23% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 015426 260 LLAAQLENQKIYYETLLQEAKEETEKIISEAVKKAIAQKLQKMQAKLDRCVREKKFLDDLNENLLKNQE 328 (407)
Q Consensus 260 lL~~qle~qr~~~E~~l~~l~~~~~~~l~~~~~~~~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~ 328 (407)
+|.+||+...+--++.+..++... ++.+..-.+++++|+..+.+++.|++||.--.+.+.....
T Consensus 1 mLRdkL~~Lq~ek~~E~~~l~~~~-----~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~s~~~~ 64 (654)
T PF09798_consen 1 MLRDKLELLQQEKQKERQALKSSV-----EELKESHEEELNKLKSEVQKLEDEKKFLNNELRSLSSSKR 64 (654)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
No 467
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=35.43 E-value=2.3e+02 Score=22.84 Aligned_cols=68 Identities=16% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 015426 264 QLENQKIYYETLLQEAKEETEKIISEAVKKAIAQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEI 337 (407)
Q Consensus 264 qle~qr~~~E~~l~~l~~~~~~~l~~~~~~~~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~ 337 (407)
.|+.++.-....++.++.+. +.++..+....... ...+.+..+...+++--..+......+..++..+
T Consensus 33 ~ld~~~r~l~~~~e~lr~~r-N~~sk~I~~~~~~~-----~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 33 ELDQERRELQQELEELRAER-NELSKEIGKLKKAG-----EDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCHTT-----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhhCc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 468
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.39 E-value=18 Score=31.17 Aligned_cols=50 Identities=22% Similarity=0.489 Sum_probs=0.0
Q ss_pred CCCCCCCcccccccccccCCCceeeecCCCccchhccccccC------CCCCCccc
Q 015426 89 ASSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD------SSCPVCRY 138 (407)
Q Consensus 89 ~~~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~------~~CP~Cr~ 138 (407)
++..+.++|.||+---..+.-|-.-.-|.-.||..|.-+..- ..|.+|+.
T Consensus 60 aGv~ddatC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k 115 (169)
T KOG3799|consen 60 AGVGDDATCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRK 115 (169)
T ss_pred cccCcCcchhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcH
No 469
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=35.21 E-value=5.5e+02 Score=26.91 Aligned_cols=96 Identities=20% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 015426 266 ENQKIYYETLLQEAKEETEKIISEAVKKAIAQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREKMAL 345 (407)
Q Consensus 266 e~qr~~~E~~l~~l~~~~~~~l~~~~~~~~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~~~ 345 (407)
+..|..++.-+..+.++. ..|+..++..+......+..++..--+++..+-..-..=....+.-.+.+.++-.......
T Consensus 3 e~rr~rh~~~~~~~~~e~-~~i~~e~e~~i~~~~~~l~~~l~~~d~~i~~~~~~l~~d~~l~~~~~~~l~~~w~~v~~~~ 81 (473)
T PF14643_consen 3 ERRRERHEKALESFHEEL-ASISEEVEPLILEAGEDLKQKLAESDEEIEEIFSKLEDDSALLEYSIQDLLELWDEVAEHS 81 (473)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCchhHHHhhHHHHHHHHHHHHHHH
Q ss_pred HhhhHHHHHHHHHHHHH
Q 015426 346 RAKDDKIQDSEAQLRDL 362 (407)
Q Consensus 346 ~~~~~~i~~Leeq~~dL 362 (407)
......|.+|.+.+.++
T Consensus 82 ~~r~~~I~~l~~~L~~~ 98 (473)
T PF14643_consen 82 QKRKQWIKELDEDLEEL 98 (473)
T ss_pred HHHHHHHHHHHHHHHHH
No 470
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=35.04 E-value=6.6e+02 Score=27.77 Aligned_cols=113 Identities=12% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015426 257 YNELLAAQLENQKIYYETLLQEAKEETEKIISEAVKKAIAQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISE 336 (407)
Q Consensus 257 y~~lL~~qle~qr~~~E~~l~~l~~~~~~~l~~~~~~~~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~ 336 (407)
..+.+..+++.|-..+.+++.+..... .+..+.+...+..+..++..+...+..+++--..+.........+++.
T Consensus 109 ~l~~~q~a~~~~e~~lq~q~e~~~n~~-----q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~ 183 (716)
T KOG4593|consen 109 RLRQLQEALKGQEEKLQEQLERNRNQC-----QANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKR 183 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhHHHHhh
Q 015426 337 IEEREKMALRAKDDKIQDSEAQLRDLMAYLEAEKTLQQ 374 (407)
Q Consensus 337 ~~~~~~~~~~~~~~~i~~Leeq~~dLm~~l~~~~~~~~ 374 (407)
+.-.+....+..+.++..+++....+|.-++....+..
T Consensus 184 ~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~ 221 (716)
T KOG4593|consen 184 LHSELQNEEKELDRQHKQLQEENQKIQELQASLEERAD 221 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 471
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=35.01 E-value=3.2e+02 Score=24.16 Aligned_cols=97 Identities=11% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015426 261 LAAQLENQKIYYETLLQEAKEETEK--IISEAVKKAIAQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIE 338 (407)
Q Consensus 261 L~~qle~qr~~~E~~l~~l~~~~~~--~l~~~~~~~~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~ 338 (407)
|...|+..+......|++.++..++ .+....+..+.+.-.+.+..++...++... ...+.+.+-.......+++..
T Consensus 29 I~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~~--~~~ea~~eA~~ea~r~~~~A~ 106 (154)
T PRK06568 29 ILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESNEVTKK--IIQEKTKEIEEFLEHKKSDAI 106 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Q 015426 339 EREKMALRAKDDKIQDSEAQLRDL 362 (407)
Q Consensus 339 ~~~~~~~~~~~~~i~~Leeq~~dL 362 (407)
++....... -+.+|+.|+-||
T Consensus 107 ~~Ie~Ek~~---Al~elr~eva~L 127 (154)
T PRK06568 107 QLIQNQKST---ASKELQDEFCDE 127 (154)
T ss_pred HHHHHHHHH---HHHHHHHHHHHH
No 472
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=34.96 E-value=51 Score=35.14 Aligned_cols=57 Identities=11% Similarity=0.195 Sum_probs=0.0
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCccccc
Q 015426 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFNS 58 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~~ 58 (407)
+|..++..++..| ..|.+++|++++...++-...+.|.+.++|..-...+||+.|+.
T Consensus 297 ~~~~~L~~~F~~~-G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~g 353 (562)
T TIGR01628 297 VTDEKLRELFSEC-GEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGG 353 (562)
T ss_pred cCHHHHHHHHHhc-CCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCC
No 473
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=34.77 E-value=3.3e+02 Score=24.29 Aligned_cols=89 Identities=24% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 015426 255 NEYNELLAAQLENQKIYYETLLQEAKEETEKIIS-EAVKKAIAQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAK 333 (407)
Q Consensus 255 ~ey~~lL~~qle~qr~~~E~~l~~l~~~~~~~l~-~~~~~~~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~k 333 (407)
.+|..-+.+.++..+..+......++...++..+ ...-+...++..++.+.+.+...+...++.....+..+.+.+.+.
T Consensus 101 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 180 (191)
T PF04156_consen 101 QERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEK 180 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 015426 334 ISEIEEREKM 343 (407)
Q Consensus 334 l~~~~~~~~~ 343 (407)
+.+.++-.++
T Consensus 181 ~~~~~~l~~~ 190 (191)
T PF04156_consen 181 IQELQELLEQ 190 (191)
T ss_pred HHHHHHHHhh
No 474
>PLN02939 transferase, transferring glycosyl groups
Probab=34.74 E-value=7.8e+02 Score=28.53 Aligned_cols=123 Identities=16% Similarity=0.187 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH---
Q 015426 241 TSDALLSSKVEAIVNEYNELLAAQLENQKIYYETLLQEAKE---------------------ETEKIISEAVKKAIA--- 296 (407)
Q Consensus 241 ~~~~~~~~k~~~~~~ey~~lL~~qle~qr~~~E~~l~~l~~---------------------~~~~~l~~~~~~~~~--- 296 (407)
+++.+..-|.+-+...-+..-.--||.+|..++.-+.+++. ++.+.+...+.++..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (977)
T PLN02939 238 LKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVE 317 (977)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 015426 297 ------QKLQKMQAKLDRCVREKKFLD------DLNENLLKNQEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDLM 363 (407)
Q Consensus 297 ------~~l~~l~~~l~~~~~e~~~l~------eln~~l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dLm 363 (407)
++.++|+.++++++.-++... +.-+.+.+..+.+++++.+-.++....++..++.|.+++..+..|.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (977)
T PLN02939 318 KAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLK 396 (977)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 475
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=34.64 E-value=3.6e+02 Score=24.67 Aligned_cols=89 Identities=15% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015426 264 QLENQKIYYETLLQEAKEETEKIISEAVKKAIAQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREKM 343 (407)
Q Consensus 264 qle~qr~~~E~~l~~l~~~~~~~l~~~~~~~~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~ 343 (407)
.+...+...-+....++.+.++. .+..+..+..+.+|+.++..+..+...+....+........++.....+.++...
T Consensus 100 ~lk~~~~~~~e~~k~le~~~~~~--~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~ 177 (190)
T PF05266_consen 100 SLKDDQEKLLEERKKLEKKIEEK--EAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIEN 177 (190)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhHHHHH
Q 015426 344 ALRAKDDKIQD 354 (407)
Q Consensus 344 ~~~~~~~~i~~ 354 (407)
.....+....+
T Consensus 178 ~e~~F~~~~aa 188 (190)
T PF05266_consen 178 AELEFQSVAAA 188 (190)
T ss_pred HHHHHHHHhcC
No 476
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=34.23 E-value=4.9e+02 Score=26.01 Aligned_cols=148 Identities=20% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 015426 250 VEAIVNEYNELLAAQLENQKIYYETLLQEAKEETEKIISEAVKKAIAQKLQKMQAKLDRCVRE----KKFLDDLNENLLK 325 (407)
Q Consensus 250 ~~~~~~ey~~lL~~qle~qr~~~E~~l~~l~~~~~~~l~~~~~~~~~~~l~~l~~~l~~~~~e----~~~l~eln~~l~~ 325 (407)
+..+..|-......||..|...|-.+..++..-. .-++.+...+.+.+.++..++.++++| +..-+.-|+.+..
T Consensus 205 lak~~~e~~~~~e~qlK~ql~lY~aKyeefq~tl--~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~ 282 (391)
T KOG1850|consen 205 LAKIMLEEMKQVEGQLKEQLALYMAKYEEFQTTL--AKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQ 282 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q ss_pred h------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhHHHHhhhccccCCCCcEEeecCCCCCCCCCC
Q 015426 326 N------QEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDLMAYLEAEKTLQQLSISNEIKDGTVLPMSVESSTSTGT 399 (407)
Q Consensus 326 ~------~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dLm~~l~~~~~~~~~~~~~ei~~G~v~~~~~~~~~~~~~ 399 (407)
- ...--..+..-..++.+-+++.+..-++|.+-++|+-..+.++...... ...+.....+........++++.
T Consensus 283 la~ekt~~~k~~~~lq~kiq~LekLcRALq~ernel~~~~~~~e~~v~~k~~~~~l-a~pe~~~~~~~~~~~~~~ts~~~ 361 (391)
T KOG1850|consen 283 LAEEKTVRDKEYETLQKKIQRLEKLCRALQTERNELNKKLEDLEAQVSAKNAMKDL-ATPESKPCIILDSEKKLNTSSKR 361 (391)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcccchhhhhhhh-cCccccccccccchhccCCchhc
Q ss_pred C
Q 015426 400 K 400 (407)
Q Consensus 400 ~ 400 (407)
.
T Consensus 362 a 362 (391)
T KOG1850|consen 362 A 362 (391)
T ss_pred c
No 477
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=34.21 E-value=3.4e+02 Score=24.17 Aligned_cols=98 Identities=13% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015426 261 LAAQLENQKIYYETLLQEAKEETEKIISEAVKKAIAQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEER 340 (407)
Q Consensus 261 L~~qle~qr~~~E~~l~~l~~~~~~~l~~~~~~~~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~ 340 (407)
+..-|+..++...+.+.+.++.. .-++.......+++..++.+......+... +.......-....+...+.+.++
T Consensus 43 i~~~l~~R~~~I~~~l~~Ae~~~--~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~--~a~~~~~~~~~~A~~ea~~~~~~ 118 (173)
T PRK13453 43 LKDVMDKRERDINRDIDDAEQAK--LNAQKLEEENKQKLKETQEEVQKILEDAKV--QARQQQEQIIHEANVRANGMIET 118 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHh-hhHHHHHHHHHHHHH
Q 015426 341 EKMALRA-KDDKIQDSEAQLRDL 362 (407)
Q Consensus 341 ~~~~~~~-~~~~i~~Leeq~~dL 362 (407)
....+.. +++-+.+|+.++.+|
T Consensus 119 A~~~I~~ek~~a~~~l~~ei~~l 141 (173)
T PRK13453 119 AQSEINSQKERAIADINNQVSEL 141 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 478
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=34.21 E-value=3.8e+02 Score=24.71 Aligned_cols=99 Identities=17% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015426 259 ELLAAQLENQKIYYETLLQEAKEETEKIISEAVKKAIAQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIE 338 (407)
Q Consensus 259 ~lL~~qle~qr~~~E~~l~~l~~~~~~~l~~~~~~~~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~ 338 (407)
..|..-++.||.-++..+..| .+.++.-..-+..|...-.+=......-.++...|.+..+.++.+++.-.
T Consensus 84 ~~Le~l~~~qk~~q~Rm~~qL---------~~aE~rhrr~i~eLe~EKrkh~~~~aqgDD~t~lLEkEReRLkq~lE~Ek 154 (192)
T PF09727_consen 84 AELEKLMEHQKKMQRRMLEQL---------AAAEKRHRRTIQELEEEKRKHAEDMAQGDDFTNLLEKERERLKQQLEQEK 154 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 015426 339 EREKMALRAKDDKIQDSEAQLRDLMAYL 366 (407)
Q Consensus 339 ~~~~~~~~~~~~~i~~Leeq~~dLm~~l 366 (407)
...+..-+.....+..|+++...+..|.
T Consensus 155 ~~~~~~EkE~~K~~~~l~eE~~k~K~~~ 182 (192)
T PF09727_consen 155 AQQKKLEKEHKKLVSQLEEERTKLKSFV 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 479
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.14 E-value=5e+02 Score=26.13 Aligned_cols=83 Identities=12% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhHHHHhh
Q 015426 295 IAQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDLMAYLEAEKTLQQ 374 (407)
Q Consensus 295 ~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dLm~~l~~~~~~~~ 374 (407)
++.-.+++..+.++..+...++.+--+.-.+....=.++++...++++.+....++.|.=|..-+++ ++++.+.
T Consensus 212 isa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e------al~~~~n 285 (365)
T KOG2391|consen 212 ISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE------ALEKAEN 285 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH------HHhhhcc
Q ss_pred hccccCCCCc
Q 015426 375 LSISNEIKDG 384 (407)
Q Consensus 375 ~~~~~ei~~G 384 (407)
....+|.+|
T Consensus 286 -~~~~~~D~~ 294 (365)
T KOG2391|consen 286 -LEALDIDEA 294 (365)
T ss_pred -CcCCCchhh
No 480
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=34.04 E-value=6.8e+02 Score=27.65 Aligned_cols=114 Identities=15% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-
Q 015426 262 AAQLENQKIYYETLLQEAKEET--EKIISEAVKKAIAQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIE- 338 (407)
Q Consensus 262 ~~qle~qr~~~E~~l~~l~~~~--~~~l~~~~~~~~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~- 338 (407)
..++..+|.-|++.+.++..+. -+.-...+.-.+....+.+.....++..+.+.+.+....+....+...+...-..
T Consensus 153 ~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~q 232 (716)
T KOG4593|consen 153 LAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQ 232 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q ss_pred ----HHHHHHHHhhhHHHHHHHHHHHHHHHHhHhHHHHhhh
Q 015426 339 ----EREKMALRAKDDKIQDSEAQLRDLMAYLEAEKTLQQL 375 (407)
Q Consensus 339 ----~~~~~~~~~~~~~i~~Leeq~~dLm~~l~~~~~~~~~ 375 (407)
.++.......+.+|.+|++-.+.++.+.+--.+..++
T Consensus 233 l~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~ 273 (716)
T KOG4593|consen 233 LSLSEELEAINKNMKDQLQELEELERALSQLREELATLREN 273 (716)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 481
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=33.93 E-value=1.2e+02 Score=21.43 Aligned_cols=30 Identities=17% Similarity=0.411 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhHh
Q 015426 339 EREKMALRAKDDKIQDSEAQLRDLMAYLEA 368 (407)
Q Consensus 339 ~~~~~~~~~~~~~i~~Leeq~~dLm~~l~~ 368 (407)
+++...+...+..+..-..+++||-.|++.
T Consensus 3 eeL~~~l~~~e~~~~~k~~~v~eLe~YiD~ 32 (48)
T PF09457_consen 3 EELISLLKKQEEENARKDSRVRELEDYIDN 32 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>PF15616 TerY-C: TerY-C metal binding domain
Probab=33.88 E-value=29 Score=29.95 Aligned_cols=52 Identities=19% Similarity=0.431 Sum_probs=0.0
Q ss_pred cCCCCCcCCCCCCCCCCCCcccccccccccCCCceeeecCCCccchhccccccCCCCCCc
Q 015426 77 YTGSLEHVQPAPASSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVC 136 (407)
Q Consensus 77 ~~~~~~~~~~~~~~~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~C 136 (407)
+..........++.+...|.||-|-..+. ..+-.|+..|| +..-....||-|
T Consensus 60 sd~~~~~~~vntseL~g~PgCP~CGn~~~-----fa~C~CGkl~C---i~g~~~~~CPwC 111 (131)
T PF15616_consen 60 SDERSNNQKVNTSELIGAPGCPHCGNQYA-----FAVCGCGKLFC---IDGEGEVTCPWC 111 (131)
T ss_pred cCCCccCcEEehHHhcCCCCCCCCcChhc-----EEEecCCCEEE---eCCCCCEECCCC
No 483
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=33.78 E-value=2.9e+02 Score=23.34 Aligned_cols=98 Identities=17% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015426 261 LAAQLENQKIYYETLLQEAKEETEKIISEAVKKAIAQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEER 340 (407)
Q Consensus 261 L~~qle~qr~~~E~~l~~l~~~~~~~l~~~~~~~~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~ 340 (407)
|..-|+..+....+.+.+.++.. .-+........+++...+.+.....++... +..+....-.+..+...+...+.
T Consensus 30 i~~~l~~R~~~I~~~l~~Ae~~~--~ea~~~~~~~e~~L~~a~~ea~~i~~~a~~--~a~~~~~~~~~~a~~ea~~~~~~ 105 (140)
T PRK07353 30 VGKVVEEREDYIRTNRAEAKERL--AEAEKLEAQYEQQLASARKQAQAVIAEAEA--EADKLAAEALAEAQAEAQASKEK 105 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHh-hhHHHHHHHHHHHHH
Q 015426 341 EKMALRA-KDDKIQDSEAQLRDL 362 (407)
Q Consensus 341 ~~~~~~~-~~~~i~~Leeq~~dL 362 (407)
....+.. ++.-+.+|..++.+|
T Consensus 106 a~~~i~~e~~~a~~~l~~~v~~l 128 (140)
T PRK07353 106 ARREIEQQKQAALAQLEQQVDAL 128 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 484
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=33.72 E-value=2e+02 Score=21.37 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015426 291 VKKAIAQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEER 340 (407)
Q Consensus 291 ~~~~~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~ 340 (407)
.+..+...+.+++...-.+...++..+.-|..|...++.++.+++++..+
T Consensus 12 akQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 12 AKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 485
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=33.71 E-value=7.8e+02 Score=28.24 Aligned_cols=126 Identities=17% Similarity=0.148 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015426 243 DALLSSKVEAIVNEYNELLAAQLENQKIYYETLLQEAKEETEKIISEAVKKAIAQKLQKMQAKLDRCVREKKFLDDLNEN 322 (407)
Q Consensus 243 ~~~~~~k~~~~~~ey~~lL~~qle~qr~~~E~~l~~l~~~~~~~l~~~~~~~~~~~l~~l~~~l~~~~~e~~~l~eln~~ 322 (407)
+.....|.+-+.+-|..+-.-..+.|..-+..+-..+++++ +++...+.+.....++. ....+.-.+.-...+|+|..
T Consensus 1051 ~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~-kElk~~l~kkr~e~ik~-~~~~kdK~e~er~~rE~n~s 1128 (1189)
T KOG1265|consen 1051 EEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKET-KELKKKLDKKRMEDIKV-DKVIKDKAERERRKRELNSS 1128 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhh-ccccccHHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhHHHHh
Q 015426 323 LLKNQEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDLMAYLEAEKTLQ 373 (407)
Q Consensus 323 l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dLm~~l~~~~~~~ 373 (407)
-.+.--..+.++++...+....+.++... .-+|+.+----|+++....
T Consensus 1129 ~i~~~V~e~krL~~~~~k~~e~L~k~~~~---~leql~e~~kal~~e~~~~ 1176 (1189)
T KOG1265|consen 1129 NIKEFVEERKRLAEKQSKRQEQLVKKHLE---VLEQLAEEEKALDAEAEQE 1176 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHH
No 486
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=33.37 E-value=3.2e+02 Score=23.59 Aligned_cols=66 Identities=26% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 015426 300 QKMQAKLDRCVREKKFLDDLNENLLKN-----------------QEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDL 362 (407)
Q Consensus 300 ~~l~~~l~~~~~e~~~l~eln~~l~~~-----------------~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dL 362 (407)
+.++.-=.-+..|+..|.++.....++ ++.+..-.+.+-++++..++.|+.+|..|.+++.++
T Consensus 41 d~I~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~ 120 (131)
T PF04859_consen 41 DKIQAADEAVVSELRRLSELKRRYRKKQSDPSPQVARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDEL 120 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 015426 363 MAY 365 (407)
Q Consensus 363 m~~ 365 (407)
...
T Consensus 121 ~~~ 123 (131)
T PF04859_consen 121 NRA 123 (131)
T ss_pred HHH
No 488
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=33.33 E-value=3.3e+02 Score=23.77 Aligned_cols=105 Identities=19% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015426 261 LAAQLENQKIYYETLLQEAKEETEKIISEAVKKAIAQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEER 340 (407)
Q Consensus 261 L~~qle~qr~~~E~~l~~l~~~~~~~l~~~~~~~~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~ 340 (407)
+..-++..++...+.+.+.++.. .-++.......+++.+.+.+-.+..++... +-.+...+-....++....+.++
T Consensus 47 i~~~l~~R~~~I~~~l~~Ae~~~--~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~--~a~~~~~~~~~~A~~ea~~~~~~ 122 (156)
T CHL00118 47 LLKVLDERKEYIRKNLTKASEIL--AKANELTKQYEQELSKARKEAQLEITQSQK--EAKEIVENELKQAQKYIDSLLNE 122 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHh-hhHHHHHHHHHHHHHHHHhHhH
Q 015426 341 EKMALRA-KDDKIQDSEAQLRDLMAYLEAE 369 (407)
Q Consensus 341 ~~~~~~~-~~~~i~~Leeq~~dLm~~l~~~ 369 (407)
.+..+.. ++.-+.+|+.++.+|-.-+-.+
T Consensus 123 a~~~i~~ek~~a~~~l~~~v~~lA~~ia~k 152 (156)
T CHL00118 123 ATKQLEAQKEKALKSLEEQVDTLSDQIEEK 152 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 489
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=32.91 E-value=31 Score=28.71 Aligned_cols=29 Identities=21% Similarity=0.481 Sum_probs=0.0
Q ss_pred ccC-CCCCCcccccCCCCccceeecccCCCcccccccCcc
Q 015426 128 WTD-SSCPVCRYCQQQPEKSICFVCQTSENLWMCVICGFV 166 (407)
Q Consensus 128 w~~-~~CP~Cr~~~~~~~~~~C~~C~~~~~l~~Cl~Cg~~ 166 (407)
|+. ..||.|...|. ..+.+.-+|..||..
T Consensus 6 lGtKR~Cp~CG~kFY----------DLnk~PivCP~CG~~ 35 (108)
T PF09538_consen 6 LGTKRTCPSCGAKFY----------DLNKDPIVCPKCGTE 35 (108)
T ss_pred cCCcccCCCCcchhc----------cCCCCCccCCCCCCc
No 490
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=32.91 E-value=1.8e+02 Score=23.90 Aligned_cols=48 Identities=19% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 015426 298 KLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREKMAL 345 (407)
Q Consensus 298 ~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~~~ 345 (407)
.+.++++++..++++.+.++.-|..|....+.|+....-+++.....+
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~L 75 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNEL 75 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHc
No 491
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=32.89 E-value=3.7e+02 Score=29.53 Aligned_cols=68 Identities=12% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 015426 295 IAQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDL 362 (407)
Q Consensus 295 ~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dL 362 (407)
..+++..+++++....++......-.+.+.++.+....++......+...+...+.++..|++++.+|
T Consensus 344 ~~q~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l 411 (656)
T PRK06975 344 LNRKVDRLDQELVQRQQANDAQTAELRVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDL 411 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.83 E-value=31 Score=35.85 Aligned_cols=93 Identities=16% Similarity=0.171 Sum_probs=0.0
Q ss_pred CcccccccccccCCCceeeecCCCccchhccccccC-CCCCCcccccCCCCccceeecccCCCcccccccCccccccCCc
Q 015426 95 PSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD-SSCPVCRYCQQQPEKSICFVCQTSENLWMCVICGFVGCGRYKG 173 (407)
Q Consensus 95 ~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~-~~CP~Cr~~~~~~~~~~C~~C~~~~~l~~Cl~Cg~~~Cgr~~~ 173 (407)
|.|+...... ......+.-.|+|.||..|...|-. ..|+....-........=.......+...|..|-..+=-.-..
T Consensus 164 ~~C~~av~~~-~~~~~~v~C~~g~~FC~~C~~~~H~p~~C~~~~~wl~k~~~~se~~~wi~~ntk~CP~c~~~iek~~gc 242 (444)
T KOG1815|consen 164 PGCGLAVKFG-SLESVEVDCGCGHEFCFACGEESHSPVSCPGAKKWLKKCRDDSETINWILANTKECPKCKVPIEKDGGC 242 (444)
T ss_pred CCCCceeecc-CCCccceeCCCCchhHhhccccccCCCcccchHHHHHhhhhhhhhhhhhhccCccCCCcccchhccCCc
Q ss_pred cccccccccCCceeE
Q 015426 174 GHAIIHWKETEHCYS 188 (407)
Q Consensus 174 ~Ha~~H~~~t~H~~~ 188 (407)
.|+.-+...-.|.|+
T Consensus 243 ~~~~~~~~~c~~~FC 257 (444)
T KOG1815|consen 243 NHMTCKSASCKHEFC 257 (444)
T ss_pred cccccccCCcCCeec
No 493
>PF15294 Leu_zip: Leucine zipper
Probab=32.71 E-value=4.3e+02 Score=25.78 Aligned_cols=74 Identities=16% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHhH
Q 015426 294 AIAQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREKMALR-----AKDDKIQDSEAQLRDLMAYLE 367 (407)
Q Consensus 294 ~~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~~~~-----~~~~~i~~Leeq~~dLm~~l~ 367 (407)
.+...+..|+...+++...+..++..-....+....+..++.++......... -+.+++.+|+.++..|..-++
T Consensus 129 ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~e 207 (278)
T PF15294_consen 129 LLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELE 207 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHH
No 494
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=32.68 E-value=3e+02 Score=23.08 Aligned_cols=97 Identities=15% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015426 244 ALLSSKVEAIVNEYNELLAAQLENQKIYYETLLQEAKEETEKIISEAVKKAIAQKLQKMQAKLDRCVREKKFLDDLNENL 323 (407)
Q Consensus 244 ~~~~~k~~~~~~ey~~lL~~qle~qr~~~E~~l~~l~~~~~~~l~~~~~~~~~~~l~~l~~~l~~~~~e~~~l~eln~~l 323 (407)
+...++.+.+..+...-=..--+.-+.+.+..+..++++....+.....++ ......+...+++-.. ..|..++-.-
T Consensus 18 a~~~ek~~k~~~~LVkkGe~~~ee~k~~~~e~~~~~~e~~~~~~~~~~~~~-~~~~~~le~~~~~~v~--~~L~~lg~~t 94 (118)
T TIGR01837 18 ARVQEEGSKFFNRLVKEGELAEKRGQKRFDESVDAAREEVKTALEQTRDQV-QRNWDKLEKAFDERVE--QALNRLNIPS 94 (118)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HhhHHHHHHHHHHHHH--HHHHHcCCCC
Q ss_pred HHhHHHHHHHHHHHHHHHHH
Q 015426 324 LKNQEMWKAKISEIEEREKM 343 (407)
Q Consensus 324 ~~~~~~l~~kl~~~~~~~~~ 343 (407)
.+..+.|..++.+|+.++..
T Consensus 95 k~ev~~L~~RI~~Le~~l~~ 114 (118)
T TIGR01837 95 REEIEALSAKIEQLAVQVEE 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 495
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=32.63 E-value=2.8e+02 Score=22.81 Aligned_cols=111 Identities=17% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-----------HHHh
Q 015426 261 LAAQLENQKIYYETLLQEAKEETEKIISEAVKK--AIAQKLQKMQAKLDRCVREKKF-LDDLNEN-----------LLKN 326 (407)
Q Consensus 261 L~~qle~qr~~~E~~l~~l~~~~~~~l~~~~~~--~~~~~l~~l~~~l~~~~~e~~~-l~eln~~-----------l~~~ 326 (407)
|...|+.+...|+.++.-+.++.+--+...... .+..+.+.+-.++..+.+.+.. +..+... ....
T Consensus 6 L~~~L~~~~~~~~~L~~ll~~e~~~l~~~d~~~l~~~~~~k~~l~~~l~~le~~r~~~~~~~~~~~~~~~l~~~~~~~~~ 85 (143)
T PF05130_consen 6 LIELLEEQIELLQELLELLEEEREALISGDIDELEELVEEKQELLEELRELEKQRQQLLAKLGAEPEEATLSELIEEREE 85 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SCHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHhccHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhHHH
Q 015426 327 QEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDLMAYLEAEKT 371 (407)
Q Consensus 327 ~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dLm~~l~~~~~ 371 (407)
...+..++..+.++.+.....-..-|...-+.++.+...+.....
T Consensus 86 l~~~~~~l~~~~~~~~~~n~~N~~ll~~~~~~~~~~l~~l~~~~~ 130 (143)
T PF05130_consen 86 LQALWRELRELLEELQELNERNQQLLEQALEFVQQLLNLLQPARK 130 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
No 496
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=32.46 E-value=3.1e+02 Score=26.08 Aligned_cols=66 Identities=17% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015426 246 LSSKVEAIVNEYNELLAAQLENQKIYYETLLQEAKEETEKIISEAVKKAIAQKLQKMQAKLDRCVREKKFLD 317 (407)
Q Consensus 246 ~~~k~~~~~~ey~~lL~~qle~qr~~~E~~l~~l~~~~~~~l~~~~~~~~~~~l~~l~~~l~~~~~e~~~l~ 317 (407)
+-.+++.+...-...|.+|||..| |++-+.+...++..+....+.....+|+.++..+..++..|+
T Consensus 176 l~~q~~k~~~~qv~~in~qlErLR------L~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~~L~ 241 (289)
T COG4985 176 LRDQVDKMVEQQVRVINSQLERLR------LEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTELDALR 241 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 497
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=32.38 E-value=22 Score=34.67 Aligned_cols=52 Identities=27% Similarity=0.700 Sum_probs=0.0
Q ss_pred CCCCCCCcccccccccccCCCceeeecCCCc-----cchhccccccC----CCCCCccccc
Q 015426 89 ASSTEQPSCPVCLERLDQDTSGILTTICNHS-----FHCSCISKWTD----SSCPVCRYCQ 140 (407)
Q Consensus 89 ~~~~e~~~C~iCle~~~~~~~~~~~~~C~H~-----F~~~Cl~~w~~----~~CP~Cr~~~ 140 (407)
....+.+.|=||.+........+...||... .|..|+..|.. ..|.+|...+
T Consensus 73 ~~~~~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~ 133 (323)
T KOG1609|consen 73 ESPSSGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFF 133 (323)
T ss_pred cCCCCCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccc
No 498
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=32.33 E-value=21 Score=29.55 Aligned_cols=20 Identities=20% Similarity=0.634 Sum_probs=0.0
Q ss_pred cceeeccc-----CCCcccccccCc
Q 015426 146 SICFVCQT-----SENLWMCVICGF 165 (407)
Q Consensus 146 ~~C~~C~~-----~~~l~~Cl~Cg~ 165 (407)
++|..|+. ..++|+|..|++
T Consensus 3 p~CP~C~seytY~dg~~~iCpeC~~ 27 (109)
T TIGR00686 3 PPCPKCNSEYTYHDGTQLICPSCLY 27 (109)
T ss_pred CcCCcCCCcceEecCCeeECccccc
No 499
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=32.21 E-value=2.1e+02 Score=21.19 Aligned_cols=64 Identities=19% Similarity=0.372 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 015426 295 IAQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDL 362 (407)
Q Consensus 295 ~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dL 362 (407)
+...+..|+.++.++..++.. ......|...+..-=.++.+..+..+.....++..|++++..|
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~----~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIER----LEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 500
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=32.15 E-value=2.7e+02 Score=29.27 Aligned_cols=59 Identities=10% Similarity=0.054 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhH
Q 015426 292 KKAIAQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREKMALRAKDD 350 (407)
Q Consensus 292 ~~~~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~~~~~~~~ 350 (407)
.+.-..++.+-+.+.+.+++++..++.-.+.+.+..+.+++++++++.+.+.-..+.+.
T Consensus 64 dkVnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 64 DKVRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Done!