Query 015427
Match_columns 407
No_of_seqs 312 out of 2179
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 06:12:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015427.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015427hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 5.5E-32 1.2E-36 258.2 33.9 290 114-406 11-331 (358)
2 PRK11272 putative DMT superfam 100.0 1.5E-31 3.2E-36 251.1 35.8 278 118-406 10-288 (292)
3 PRK11689 aromatic amino acid e 100.0 9.9E-32 2.1E-36 252.6 31.3 277 115-405 3-289 (295)
4 PRK11453 O-acetylserine/cystei 100.0 6.6E-31 1.4E-35 247.6 34.3 278 119-405 7-289 (299)
5 PRK10532 threonine and homoser 100.0 3.8E-30 8.2E-35 241.6 33.8 274 114-405 10-283 (293)
6 TIGR00950 2A78 Carboxylate/Ami 100.0 4.8E-30 1E-34 237.3 31.3 256 128-398 1-259 (260)
7 PTZ00343 triose or hexose phos 100.0 1.3E-29 2.8E-34 242.9 32.5 285 114-405 47-350 (350)
8 PRK15430 putative chlorampheni 100.0 2.9E-29 6.2E-34 236.0 33.0 273 113-402 5-284 (296)
9 TIGR00817 tpt Tpt phosphate/ph 100.0 2.1E-28 4.6E-33 231.1 29.7 282 119-406 5-296 (302)
10 TIGR03340 phn_DUF6 phosphonate 100.0 2.6E-27 5.7E-32 221.2 30.0 272 118-400 3-280 (281)
11 KOG4510 Permease of the drug/m 100.0 7E-31 1.5E-35 227.9 0.3 282 115-405 37-327 (346)
12 TIGR00688 rarD rarD protein. T 99.9 2.8E-25 6E-30 204.9 29.7 246 116-378 2-255 (256)
13 PF06027 DUF914: Eukaryotic pr 99.9 9.6E-25 2.1E-29 204.1 30.8 287 115-405 12-307 (334)
14 COG0697 RhaT Permeases of the 99.9 4.3E-24 9.4E-29 200.3 35.2 283 114-406 5-290 (292)
15 COG5006 rhtA Threonine/homoser 99.9 3.5E-22 7.5E-27 173.0 28.5 268 117-401 13-280 (292)
16 TIGR00776 RhaT RhaT L-rhamnose 99.9 1.3E-21 2.9E-26 182.9 28.5 272 117-405 2-290 (290)
17 COG2962 RarD Predicted permeas 99.9 1.4E-20 2.9E-25 167.7 30.4 274 114-403 5-283 (293)
18 KOG1441 Glucose-6-phosphate/ph 99.9 5.3E-22 1.1E-26 183.3 10.9 283 116-406 17-310 (316)
19 PF08449 UAA: UAA transporter 99.8 1.1E-17 2.3E-22 157.9 29.1 261 143-406 31-300 (303)
20 KOG2765 Predicted membrane pro 99.8 6.6E-19 1.4E-23 161.0 19.4 294 111-406 9-393 (416)
21 KOG2766 Predicted membrane pro 99.7 2.1E-18 4.6E-23 149.5 3.0 280 115-405 17-301 (336)
22 COG2510 Predicted membrane pro 99.7 7.6E-16 1.6E-20 119.9 11.1 133 117-250 4-139 (140)
23 COG2510 Predicted membrane pro 99.6 2.2E-14 4.8E-19 111.7 12.2 137 264-404 4-140 (140)
24 KOG1443 Predicted integral mem 99.6 3.6E-13 7.7E-18 120.5 21.1 263 136-403 36-315 (349)
25 KOG1444 Nucleotide-sugar trans 99.6 2.7E-12 5.8E-17 116.5 24.2 274 125-405 21-302 (314)
26 PF04142 Nuc_sug_transp: Nucle 99.5 1.7E-12 3.7E-17 117.7 22.1 217 172-394 12-244 (244)
27 KOG2234 Predicted UDP-galactos 99.5 5.9E-11 1.3E-15 109.4 31.6 284 116-405 15-324 (345)
28 PF00892 EamA: EamA-like trans 99.5 1.1E-13 2.5E-18 112.6 11.5 123 126-249 1-125 (126)
29 KOG1580 UDP-galactose transpor 99.5 3.7E-13 8.1E-18 115.7 14.4 254 144-400 53-310 (337)
30 PF06800 Sugar_transport: Suga 99.5 3.7E-11 8.1E-16 108.5 24.2 245 144-400 12-268 (269)
31 PF00892 EamA: EamA-like trans 99.5 5.2E-13 1.1E-17 108.7 11.2 125 273-402 1-125 (126)
32 KOG1581 UDP-galactose transpor 99.4 8.3E-11 1.8E-15 105.6 23.2 258 143-403 50-313 (327)
33 KOG3912 Predicted integral mem 99.4 1.1E-10 2.4E-15 103.2 19.1 273 129-403 16-334 (372)
34 TIGR00950 2A78 Carboxylate/Ami 99.3 4.4E-11 9.5E-16 110.4 17.0 132 114-245 126-259 (260)
35 KOG1442 GDP-fucose transporter 99.3 3.3E-12 7.1E-17 112.5 5.3 269 133-405 45-329 (347)
36 PF13536 EmrE: Multidrug resis 99.3 4.6E-11 1E-15 95.6 11.4 105 149-254 2-110 (113)
37 PRK13499 rhamnose-proton sympo 99.3 2E-08 4.4E-13 94.6 30.7 286 114-405 5-343 (345)
38 PF03151 TPT: Triose-phosphate 99.3 1.7E-10 3.7E-15 97.6 15.0 139 264-403 1-153 (153)
39 PRK10532 threonine and homoser 99.3 4E-10 8.6E-15 105.9 18.4 137 115-252 147-283 (293)
40 PF05653 Mg_trans_NIPA: Magnes 99.2 5E-10 1.1E-14 104.6 16.8 268 113-406 4-295 (300)
41 KOG4314 Predicted carbohydrate 99.2 2.1E-10 4.6E-15 96.3 11.2 208 191-405 66-278 (290)
42 COG5070 VRG4 Nucleotide-sugar 99.2 1.1E-09 2.3E-14 93.9 15.6 270 131-404 21-297 (309)
43 PRK11272 putative DMT superfam 99.1 2.5E-09 5.4E-14 100.5 17.1 136 115-251 149-286 (292)
44 TIGR03340 phn_DUF6 phosphonate 99.1 2.4E-09 5.2E-14 100.1 17.0 133 265-403 3-135 (281)
45 PRK15430 putative chlorampheni 99.1 1.9E-09 4.1E-14 101.5 16.2 140 260-402 5-144 (296)
46 TIGR00688 rarD rarD protein. T 99.1 2.8E-09 6.1E-14 98.2 15.5 139 263-403 2-142 (256)
47 PRK11689 aromatic amino acid e 99.1 5.4E-09 1.2E-13 98.4 16.6 133 115-251 155-288 (295)
48 PLN00411 nodulin MtN21 family 99.1 6.3E-09 1.4E-13 99.9 16.7 137 115-252 188-330 (358)
49 PRK11453 O-acetylserine/cystei 99.0 3.4E-08 7.3E-13 93.2 18.0 138 115-252 142-289 (299)
50 COG4975 GlcU Putative glucose 98.9 2.9E-10 6.3E-15 99.0 0.8 273 117-405 3-287 (288)
51 PRK02971 4-amino-4-deoxy-L-ara 98.9 5.1E-08 1.1E-12 79.2 13.8 122 263-406 2-125 (129)
52 KOG1582 UDP-galactose transpor 98.8 2.7E-07 5.9E-12 81.7 16.8 272 129-405 56-334 (367)
53 TIGR00817 tpt Tpt phosphate/ph 98.8 6.6E-08 1.4E-12 91.3 13.8 138 115-252 144-295 (302)
54 TIGR00803 nst UDP-galactose tr 98.8 2.7E-08 5.8E-13 89.7 10.1 193 204-401 4-222 (222)
55 PRK15051 4-amino-4-deoxy-L-ara 98.8 2.4E-07 5.1E-12 73.4 13.3 69 182-250 41-109 (111)
56 KOG2922 Uncharacterized conser 98.7 6.3E-08 1.4E-12 88.1 10.1 268 110-405 15-308 (335)
57 COG0697 RhaT Permeases of the 98.7 8E-07 1.7E-11 83.0 17.7 136 114-251 152-288 (292)
58 PRK15051 4-amino-4-deoxy-L-ara 98.7 5.7E-07 1.2E-11 71.3 14.0 68 336-403 42-109 (111)
59 PF13536 EmrE: Multidrug resis 98.7 1.3E-07 2.9E-12 75.5 10.3 106 297-405 3-108 (113)
60 KOG1583 UDP-N-acetylglucosamin 98.7 1.9E-07 4.2E-12 82.9 11.0 251 144-403 33-314 (330)
61 COG5006 rhtA Threonine/homoser 98.7 7.2E-07 1.6E-11 78.5 13.7 138 113-250 145-282 (292)
62 PTZ00343 triose or hexose phos 98.6 2E-06 4.4E-11 82.8 17.1 135 115-249 193-347 (350)
63 PRK02971 4-amino-4-deoxy-L-ara 98.6 1.3E-06 2.9E-11 70.9 13.3 121 116-252 2-124 (129)
64 TIGR00776 RhaT RhaT L-rhamnose 98.6 9.3E-07 2E-11 82.9 13.6 129 115-250 151-288 (290)
65 COG2962 RarD Predicted permeas 98.6 1.5E-06 3.2E-11 78.5 13.5 139 262-403 6-144 (293)
66 PF03151 TPT: Triose-phosphate 98.5 7.4E-06 1.6E-10 69.0 15.4 130 117-247 1-150 (153)
67 PF06379 RhaT: L-rhamnose-prot 98.1 0.0089 1.9E-07 55.9 29.3 287 114-404 5-341 (344)
68 PF06800 Sugar_transport: Suga 98.1 7.2E-05 1.6E-09 68.1 13.0 129 113-246 135-267 (269)
69 PF06027 DUF914: Eukaryotic pr 98.1 0.00013 2.9E-09 69.0 14.8 140 112-252 164-307 (334)
70 PRK09541 emrE multidrug efflux 98.0 0.00032 6.9E-09 55.2 13.0 68 185-252 37-105 (110)
71 PRK09541 emrE multidrug efflux 97.9 8E-05 1.7E-09 58.6 9.3 68 338-405 37-105 (110)
72 PRK10452 multidrug efflux syst 97.9 9.8E-05 2.1E-09 58.9 9.2 68 338-405 37-105 (120)
73 PF10639 UPF0546: Uncharacteri 97.8 6.6E-05 1.4E-09 58.9 6.3 109 123-248 3-112 (113)
74 PF04657 DUF606: Protein of un 97.8 0.00075 1.6E-08 55.6 12.9 129 118-247 3-138 (138)
75 COG2076 EmrE Membrane transpor 97.8 0.0002 4.4E-09 55.1 8.5 66 186-251 38-104 (106)
76 PRK10452 multidrug efflux syst 97.7 0.00037 7.9E-09 55.6 9.8 69 184-252 36-105 (120)
77 COG2076 EmrE Membrane transpor 97.7 0.00032 6.9E-09 54.1 9.1 68 339-406 38-106 (106)
78 PRK11431 multidrug efflux syst 97.7 0.00031 6.7E-09 54.7 9.2 68 338-405 36-104 (105)
79 PRK10650 multidrug efflux syst 97.7 0.0013 2.7E-08 51.6 12.6 65 339-403 43-108 (109)
80 PF04657 DUF606: Protein of un 97.7 0.0012 2.6E-08 54.4 12.7 131 264-400 2-138 (138)
81 PF08449 UAA: UAA transporter 97.7 0.0011 2.3E-08 62.7 14.1 134 117-251 155-298 (303)
82 PRK10650 multidrug efflux syst 97.7 0.0017 3.6E-08 50.9 12.4 63 187-249 44-107 (109)
83 PRK11431 multidrug efflux syst 97.6 0.00063 1.4E-08 53.0 9.3 66 185-250 36-102 (105)
84 PF05653 Mg_trans_NIPA: Magnes 97.5 0.00065 1.4E-08 63.7 9.9 118 260-402 4-121 (300)
85 KOG4510 Permease of the drug/m 97.3 0.0001 2.2E-09 65.6 2.1 135 115-250 190-325 (346)
86 PRK13499 rhamnose-proton sympo 97.3 0.0036 7.9E-08 59.4 12.4 141 261-403 5-153 (345)
87 PF00893 Multi_Drug_Res: Small 97.3 0.0026 5.6E-08 48.6 9.3 55 187-241 38-93 (93)
88 KOG2765 Predicted membrane pro 97.2 0.0057 1.2E-07 57.5 11.8 141 112-252 243-392 (416)
89 PF00893 Multi_Drug_Res: Small 97.1 0.0059 1.3E-07 46.6 9.3 56 339-394 37-93 (93)
90 COG3238 Uncharacterized protei 96.9 0.043 9.4E-07 45.3 13.3 139 263-406 5-149 (150)
91 COG3238 Uncharacterized protei 96.7 0.071 1.5E-06 44.1 13.4 133 116-249 5-145 (150)
92 PF04142 Nuc_sug_transp: Nucle 96.7 0.009 2E-07 54.4 9.1 66 339-404 25-90 (244)
93 KOG1581 UDP-galactose transpor 96.7 0.024 5.1E-07 51.9 11.2 137 112-249 168-312 (327)
94 KOG1441 Glucose-6-phosphate/ph 96.6 0.0073 1.6E-07 56.6 7.7 136 114-251 161-308 (316)
95 PF07857 DUF1632: CEO family ( 96.6 0.079 1.7E-06 48.2 14.1 166 117-289 1-209 (254)
96 PF10639 UPF0546: Uncharacteri 96.4 0.017 3.6E-07 45.5 7.4 108 270-400 3-111 (113)
97 TIGR00803 nst UDP-galactose tr 96.1 0.064 1.4E-06 48.1 10.9 59 189-247 163-221 (222)
98 COG4975 GlcU Putative glucose 96.0 0.0053 1.1E-07 54.4 2.7 132 264-406 3-139 (288)
99 KOG2234 Predicted UDP-galactos 95.7 0.42 9.1E-06 45.0 14.3 136 266-402 18-163 (345)
100 KOG1444 Nucleotide-sugar trans 94.6 0.33 7.2E-06 45.0 10.0 136 115-251 156-301 (314)
101 KOG4314 Predicted carbohydrate 94.4 0.032 7E-07 47.7 2.8 61 345-405 67-127 (290)
102 KOG1580 UDP-galactose transpor 93.8 0.41 8.9E-06 42.4 8.3 135 116-251 172-314 (337)
103 KOG4831 Unnamed protein [Funct 93.4 0.58 1.2E-05 35.8 7.5 110 120-248 7-123 (125)
104 COG5070 VRG4 Nucleotide-sugar 93.2 0.78 1.7E-05 40.3 9.1 132 117-249 156-295 (309)
105 PF06379 RhaT: L-rhamnose-prot 93.1 1.8 3.9E-05 40.9 11.9 142 261-404 5-154 (344)
106 KOG2922 Uncharacterized conser 92.9 0.047 1E-06 50.5 1.2 118 260-402 18-135 (335)
107 PRK02237 hypothetical protein; 92.6 2 4.3E-05 33.2 9.5 53 199-251 52-106 (109)
108 PRK02237 hypothetical protein; 91.1 2 4.3E-05 33.2 8.1 48 359-406 61-108 (109)
109 PF02694 UPF0060: Uncharacteri 90.9 2.8 6E-05 32.4 8.6 54 198-251 50-104 (107)
110 KOG3912 Predicted integral mem 90.5 0.57 1.2E-05 42.6 5.4 65 339-403 94-158 (372)
111 KOG1443 Predicted integral mem 90.1 6.3 0.00014 36.6 11.7 133 115-248 163-313 (349)
112 KOG1442 GDP-fucose transporter 90.0 0.42 9.2E-06 43.3 4.2 136 113-250 182-327 (347)
113 PF02694 UPF0060: Uncharacteri 89.5 2.7 5.7E-05 32.5 7.5 48 359-406 59-106 (107)
114 PF07857 DUF1632: CEO family ( 89.2 1.8 4E-05 39.4 7.7 60 111-170 178-249 (254)
115 KOG1582 UDP-galactose transpor 89.1 3.4 7.3E-05 37.6 9.1 137 115-252 189-334 (367)
116 TIGR02865 spore_II_E stage II 84.2 65 0.0014 34.7 17.5 45 204-248 10-54 (764)
117 KOG1583 UDP-N-acetylglucosamin 79.7 21 0.00046 32.8 9.7 134 113-250 161-314 (330)
118 COG1742 Uncharacterized conser 77.4 2.7 5.8E-05 32.2 2.9 41 211-251 65-105 (109)
119 COG1742 Uncharacterized conser 75.2 14 0.0003 28.4 6.2 48 359-406 60-107 (109)
120 PF06570 DUF1129: Protein of u 72.8 66 0.0014 28.3 11.7 81 123-205 92-173 (206)
121 PF06123 CreD: Inner membrane 69.6 1.2E+02 0.0027 30.0 14.6 102 263-380 300-401 (430)
122 KOG2766 Predicted membrane pro 68.2 5.2 0.00011 36.1 3.1 138 113-252 163-301 (336)
123 PF05297 Herpes_LMP1: Herpesvi 67.0 1.8 4E-05 39.3 0.0 53 197-249 42-96 (381)
124 PF04342 DUF486: Protein of un 66.5 9 0.00019 29.5 3.6 30 372-401 77-106 (108)
125 KOG2322 N-methyl-D-aspartate r 66.2 1E+02 0.0022 27.7 11.6 34 263-296 195-229 (237)
126 PF02673 BacA: Bacitracin resi 63.3 1.2E+02 0.0027 27.8 11.9 120 115-252 79-204 (259)
127 PRK11715 inner membrane protei 62.2 1.7E+02 0.0037 29.1 14.2 47 263-312 306-352 (436)
128 KOG4831 Unnamed protein [Funct 61.4 14 0.00029 28.5 3.7 57 345-401 66-123 (125)
129 PF09656 PGPGW: Putative trans 48.4 62 0.0013 21.7 4.8 44 233-286 4-47 (53)
130 PF05977 MFS_3: Transmembrane 46.3 3.4E+02 0.0074 27.7 16.2 18 140-157 99-116 (524)
131 PF07168 Ureide_permease: Urei 46.2 3.7 8.1E-05 38.0 -1.6 110 122-233 2-127 (336)
132 PF11023 DUF2614: Protein of u 42.2 99 0.0022 24.2 5.8 23 228-250 6-28 (114)
133 PF04342 DUF486: Protein of un 38.7 1.9E+02 0.0041 22.5 9.2 47 202-248 59-106 (108)
134 PF07698 7TM-7TMR_HD: 7TM rece 37.6 2.6E+02 0.0057 23.9 19.6 42 274-315 113-154 (194)
135 PF04246 RseC_MucC: Positive r 36.5 50 0.0011 26.8 3.8 44 200-244 63-106 (135)
136 COG4657 RnfA Predicted NADH:ub 34.1 2.9E+02 0.0062 23.3 10.1 61 223-288 90-157 (193)
137 PF07168 Ureide_permease: Urei 34.1 61 0.0013 30.3 4.2 29 112-140 215-243 (336)
138 PF10754 DUF2569: Protein of u 33.5 2.8E+02 0.006 22.9 11.4 26 262-287 120-145 (149)
139 COG3247 HdeD Uncharacterized c 33.3 3.2E+02 0.007 23.7 15.6 158 226-402 15-176 (185)
140 TIGR00844 c_cpa1 na(+)/h(+) an 32.5 6.8E+02 0.015 27.2 25.0 18 234-251 176-193 (810)
141 COG3086 RseC Positive regulato 31.6 84 0.0018 25.9 4.1 27 199-225 69-95 (150)
142 PF11361 DUF3159: Protein of u 30.9 3.2E+02 0.0069 23.7 7.9 72 206-281 28-99 (187)
143 COG4858 Uncharacterized membra 30.4 3.6E+02 0.0078 23.4 9.9 88 117-206 101-189 (226)
144 TIGR01299 synapt_SV2 synaptic 30.1 7.3E+02 0.016 26.8 14.7 42 268-309 601-642 (742)
145 COG3086 RseC Positive regulato 29.8 93 0.002 25.6 4.1 30 351-380 68-97 (150)
146 KOG1623 Multitransmembrane pro 27.3 2.9E+02 0.0062 25.1 7.2 43 261-303 126-168 (243)
147 PF10856 DUF2678: Protein of u 27.2 52 0.0011 25.9 2.2 39 146-185 64-102 (118)
148 COG3476 Tryptophan-rich sensor 26.5 3.9E+02 0.0086 22.5 12.3 60 341-400 61-121 (161)
149 PF04550 Phage_holin_2: Phage 26.2 2.8E+02 0.0061 20.7 7.1 63 217-287 17-85 (89)
150 TIGR01167 LPXTG_anchor LPXTG-m 24.6 1.1E+02 0.0024 17.7 2.9 24 383-406 10-33 (34)
151 PRK10862 SoxR reducing system 24.1 82 0.0018 26.4 3.0 27 198-224 68-94 (154)
152 PF06570 DUF1129: Protein of u 24.1 4.9E+02 0.011 22.7 11.2 23 263-285 179-201 (206)
153 PRK11715 inner membrane protei 23.7 7.4E+02 0.016 24.7 11.7 16 233-248 387-402 (436)
154 PF04156 IncA: IncA protein; 23.3 1.2E+02 0.0025 26.2 4.0 18 235-252 13-30 (191)
155 COG3169 Uncharacterized protei 23.1 3.5E+02 0.0076 20.7 9.8 110 291-404 6-116 (116)
156 PRK10263 DNA translocase FtsK; 22.9 1.2E+03 0.026 27.0 13.0 147 148-312 25-184 (1355)
157 PF09529 Intg_mem_TP0381: Inte 22.6 5.4E+02 0.012 22.7 21.8 109 179-288 42-151 (225)
158 KOG3817 Uncharacterized conser 21.9 4.2E+02 0.0091 25.5 7.3 79 128-211 201-284 (452)
159 COG3965 Predicted Co/Zn/Cd cat 21.3 6.5E+02 0.014 23.2 12.0 106 123-232 101-215 (314)
160 PF07331 TctB: Tripartite tric 20.8 4.4E+02 0.0096 21.0 13.0 29 194-229 84-112 (141)
161 CHL00196 psbY photosystem II p 20.6 1.8E+02 0.0038 17.8 3.0 21 262-282 5-25 (36)
162 PF06123 CreD: Inner membrane 20.0 8.7E+02 0.019 24.2 11.8 16 141-156 322-337 (430)
163 TIGR02206 intg_mem_TP0381 cons 20.0 6.3E+02 0.014 22.5 17.2 112 192-304 52-164 (222)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=5.5e-32 Score=258.19 Aligned_cols=290 Identities=15% Similarity=0.174 Sum_probs=235.6
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhhcc-CcCHHHHHHHHHHHHHHHHHHHHHHhCC-C-CC-CChhhHHHHHHHHHHHHH
Q 015427 114 MLLEWAVLVSPFFFWGTAMVAMKEVLP-KAGTFFVAAFRLIPAGLLLITFASSQGR-K-LP-SGFNAWVSIFLFALVDAS 189 (407)
Q Consensus 114 ~~~~~l~~~~~~~~~~~~~~~~k~~~~-~~~p~~~~~~r~~~~~l~~~~~~~~~~~-~-~~-~~~~~~~~~~~~g~~~~~ 189 (407)
+.+.++.++...+.++...++.|.+.+ +++|..+.++|+.++.++++++.+.+++ + .+ ..++++.++.+.|+++ .
T Consensus 11 ~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g-~ 89 (358)
T PLN00411 11 EAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG-S 89 (358)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH-H
Confidence 456788999999999999999999887 5999999999999999999998876543 2 22 2467778888888887 5
Q ss_pred HHHHHHHHHhhccchhhHHHHhhcHHHHHHHHHHHH------cCCcchHHHHHHHHHHHHHHHHhhcCCCC---------
Q 015427 190 CFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALL------FGESIGLVGAGGLVLGVIGLLLLEAPAFD--------- 254 (407)
Q Consensus 190 ~~~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~------l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~--------- 254 (407)
..+.+++.++++++++.++++.++.|+++.++++++ +|||+++.+++|++++++|+.++..++..
T Consensus 90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~ 169 (358)
T PLN00411 90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPP 169 (358)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence 577789999999999999999999999999999999 69999999999999999999998753211
Q ss_pred -----------CCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcccCChH-HHHHHHHHHHHHHHHHHHHHhcCCCccccc
Q 015427 255 -----------ESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPV-MATGWHMVIGGLPLMVISVLNHDPVYGESV 322 (407)
Q Consensus 255 -----------~~~~~~~~~G~l~~l~sa~~~a~~~v~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (407)
.........|+.+.++++++|++|+++.|+..++.++. ..+++.+.++.+...+.....++.......
T Consensus 170 ~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~ 249 (358)
T PLN00411 170 YLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWI 249 (358)
T ss_pred cccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccce
Confidence 01112234699999999999999999999987777554 566677777777666666655432211111
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 015427 323 KELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN 402 (407)
Q Consensus 323 ~~~~~~~~~~ll~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~ 402 (407)
..++.. ...++|.+++ +.++|.+|++++++.+|++++++.+++|+++++++++++||++++.+++|+++|+.|+++..
T Consensus 250 ~~~~~~-~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~ 327 (358)
T PLN00411 250 IHFDIT-LITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVM 327 (358)
T ss_pred eccchH-HHHHHHHHHH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 233433 3447777765 67899999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCC
Q 015427 403 FRGS 406 (407)
Q Consensus 403 ~~~~ 406 (407)
+.++
T Consensus 328 ~~~~ 331 (358)
T PLN00411 328 WGKA 331 (358)
T ss_pred hhhh
Confidence 7553
No 2
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=100.00 E-value=1.5e-31 Score=251.14 Aligned_cols=278 Identities=25% Similarity=0.403 Sum_probs=236.3
Q ss_pred HHHHHHHHHHHHhHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 015427 118 WAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQ 197 (407)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 197 (407)
.+.++...++||.+.++.|...++++|.+++++|+.++.++++++...++++ .++++++......|.++...++.++++
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~ 88 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVESWPPLMMAGVRFLIAGILLLAFLLLRGHP-LPTLRQWLNAALIGLLLLAVGNGMVTV 88 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556888999999999999999999999999999999999998887765544 334577778888888776667788899
Q ss_pred Hh-hccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhHHHHHHHHHHHHH
Q 015427 198 GL-QRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMA 276 (407)
Q Consensus 198 al-~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~G~l~~l~sa~~~a 276 (407)
+. ++++++.++++.++.|+++.+++.+ +|||+++++++|++++++|+.++..++. . +....|++++++++++|+
T Consensus 89 ~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~-~---~~~~~G~l~~l~a~~~~a 163 (292)
T PRK11272 89 AEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGN-L---SGNPWGAILILIASASWA 163 (292)
T ss_pred HHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcc-c---ccchHHHHHHHHHHHHHH
Confidence 99 9999999999999999999999975 6999999999999999999999875431 1 123469999999999999
Q ss_pred HHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 015427 277 VGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGS 356 (407)
Q Consensus 277 ~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~l~~~al~~~~ 356 (407)
.+.+..|+..++ ++.....+...++.++..+.....+.+. ....+...|..+++++++++++++.+|++++++.+
T Consensus 164 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~ 238 (292)
T PRK11272 164 FGSVWSSRLPLP-VGMMAGAAEMLAAGVVLLIASLLSGERL----TALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVR 238 (292)
T ss_pred HHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHHHHHcCCcc----cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999998654 3455667788888887777766544321 11235678889999999999999999999999999
Q ss_pred hhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccCC
Q 015427 357 LTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS 406 (407)
Q Consensus 357 ~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~~~~ 406 (407)
+++++.+.+++|+++++++++++||++++.+++|+++++.|+++.++.++
T Consensus 239 ~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 239 PALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999876543
No 3
>PRK11689 aromatic amino acid exporter; Provisional
Probab=100.00 E-value=9.9e-32 Score=252.59 Aligned_cols=277 Identities=17% Similarity=0.133 Sum_probs=218.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 015427 115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGF 194 (407)
Q Consensus 115 ~~~~l~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 194 (407)
.+++++++++.++||.+++..|...+++||..+.++|+.++.+++.++.. +++ .++.+++.++.+.+...+++.+
T Consensus 3 ~~~~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~--~~~---~~~~~~~~~~~~~l~~~~~~~~ 77 (295)
T PRK11689 3 QKATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVG--FPR---LRQFPKRYLLAGGLLFVSYEIC 77 (295)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHcc--ccc---cccccHHHHHHHhHHHHHHHHH
Confidence 34677889999999999999999999999999999999999998887631 111 1122333445556566667777
Q ss_pred HHHHhhc----cchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCCCCCC------CcchhhhH
Q 015427 195 LAQGLQR----TSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDES------NSSLWGSG 264 (407)
Q Consensus 195 ~~~al~~----~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~------~~~~~~~G 264 (407)
++.++++ ++++.++++.++.|+++.+++++++|||+++.+++|++++++|+.++..++.+.+ +......|
T Consensus 78 ~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G 157 (295)
T PRK11689 78 LALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLS 157 (295)
T ss_pred HHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHH
Confidence 7777754 6788889999999999999999999999999999999999999999987642111 11122469
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHHHHHHHHH
Q 015427 265 EWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAIS 344 (407)
Q Consensus 265 ~l~~l~sa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~ 344 (407)
++++++++++|++|.++.|+..++.++..... ..+.+...+.....+.+. ...+...|..+++.+ ++++++
T Consensus 158 ~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~l~~~~-~~t~~~ 228 (295)
T PRK11689 158 YGLAFIGAFIWAAYCNVTRKYARGKNGITLFF---ILTALALWIKYFLSPQPA-----MVFSLPAIIKLLLAA-AAMGFG 228 (295)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCchhHHH---HHHHHHHHHHHHHhcCcc-----ccCCHHHHHHHHHHH-HHHHHH
Confidence 99999999999999999999987777765422 223333333333332221 235667788888877 579999
Q ss_pred HHHHHHHhccCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccC
Q 015427 345 YGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 405 (407)
Q Consensus 345 ~~l~~~al~~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~~~ 405 (407)
|.+|++++|+.++.+++.+.+++|+++++++++++||+++..+++|+++|+.|+++....+
T Consensus 229 ~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 229 YAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred HHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence 9999999999999999999999999999999999999999999999999999997765543
No 4
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=100.00 E-value=6.6e-31 Score=247.55 Aligned_cols=278 Identities=22% Similarity=0.336 Sum_probs=220.1
Q ss_pred HHHHHHHHHHHhHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 015427 119 AVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQG 198 (407)
Q Consensus 119 l~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a 198 (407)
++.++++++||.++++.|...++++|..+.++|+.++.+.++++.. +++ . .+...+..|.......+.+++.+
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~--~~~--~---~~~~~~~~g~~~~~~~~~~~~~~ 79 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVA--RPK--V---PLNLLLGYGLTISFGQFAFLFCA 79 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc--CCC--C---chHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999999999999999999999998877665542 111 1 12234444554444455677889
Q ss_pred hhc-cchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhHHHHHHHHHHHHHH
Q 015427 199 LQR-TSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAV 277 (407)
Q Consensus 199 l~~-~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~G~l~~l~sa~~~a~ 277 (407)
+++ .+++.++++.++.|+++.+++++++|||++++++++++++++|+.++..++.+. ......|++++++++++|++
T Consensus 80 ~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~--~~~~~~G~~l~l~aal~~a~ 157 (299)
T PRK11453 80 INFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNG--QHVAMLGFMLTLAAAFSWAC 157 (299)
T ss_pred HHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCC--cchhHHHHHHHHHHHHHHHH
Confidence 988 588999999999999999999999999999999999999999999998654222 12223699999999999999
Q ss_pred HHHHHHhhcccCCh---HHHHHHHHHHHHHHHHHHHHHhcCCCc-ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015427 278 GTVMVRWVSKYSDP---VMATGWHMVIGGLPLMVISVLNHDPVY-GESVKELTSSDILALLYTSIFGSAISYGVYFYSAT 353 (407)
Q Consensus 278 ~~v~~r~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~g~~~~~~~~~l~~~al~ 353 (407)
|.++.|+..++.+. .....+.+..+.+.........+++.. ...+...+...|..++++++++++++|.+|+++++
T Consensus 158 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~ 237 (299)
T PRK11453 158 GNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLG 237 (299)
T ss_pred HHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999997654432 233444455554444444444443221 11223457788999999999999999999999999
Q ss_pred cCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccC
Q 015427 354 KGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 405 (407)
Q Consensus 354 ~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~~~ 405 (407)
+.++.+++.+.+++|+++.+++++++||+++..+++|+++|++|+++..+.+
T Consensus 238 ~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 238 RYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence 9999999999999999999999999999999999999999999999876544
No 5
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=100.00 E-value=3.8e-30 Score=241.61 Aligned_cols=274 Identities=19% Similarity=0.195 Sum_probs=225.9
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 015427 114 MLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQG 193 (407)
Q Consensus 114 ~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 193 (407)
+.+++.+++++.++|+.++.+.|...+++||..+.++|+.++.++++++...+++ +.++++++..+..|++. ...+.
T Consensus 10 ~~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~--~~~~~~~~~~~~~g~~~-~~~~~ 86 (293)
T PRK10532 10 VWLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRL--RFAKEQRLPLLFYGVSL-GGMNY 86 (293)
T ss_pred cchHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhc--cCCHHHHHHHHHHHHHH-HHHHH
Confidence 4678999999999999999999999999999999999999999998877644332 33457777787888765 44677
Q ss_pred HHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhHHHHHHHHHH
Q 015427 194 FLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQ 273 (407)
Q Consensus 194 ~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~G~l~~l~sa~ 273 (407)
++++++++++++.++++.++.|+++.+++. |++.. ..++.++++|+.++..++.+.++ ....|+++++++++
T Consensus 87 ~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~--~~~~~i~~~Gv~li~~~~~~~~~--~~~~G~ll~l~aa~ 158 (293)
T PRK10532 87 LFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVD--FVWVVLAVLGLWFLLPLGQDVSH--VDLTGAALALGAGA 158 (293)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHH--HHHHHHHHHHHheeeecCCCccc--CChHHHHHHHHHHH
Confidence 899999999999999999999999998873 66554 45567889999988754422222 22469999999999
Q ss_pred HHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015427 274 SMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSAT 353 (407)
Q Consensus 274 ~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~l~~~al~ 353 (407)
+|+.|.+..|+..++.++... .+..++++++..+.....+.. ...+...|..++++|+++++++|.+|+++++
T Consensus 159 ~~a~~~v~~r~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~ 231 (293)
T PRK10532 159 CWAIYILSGQRAGAEHGPATV-AIGSLIAALIFVPIGALQAGE------ALWHWSILPLGLAVAILSTALPYSLEMIALT 231 (293)
T ss_pred HHHHHHHHHHHHhccCCchHH-HHHHHHHHHHHHHHHHHccCc------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888887765 455666666666666543321 1245566777789999999999999999999
Q ss_pred cCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccC
Q 015427 354 KGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 405 (407)
Q Consensus 354 ~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~~~ 405 (407)
+.++.+++++.++||+++.+++++++||+++..+++|+++|++|++...+.+
T Consensus 232 ~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 232 RLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred hcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999886554
No 6
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=100.00 E-value=4.8e-30 Score=237.32 Aligned_cols=256 Identities=27% Similarity=0.388 Sum_probs=222.1
Q ss_pred HHhHHHHHHhhcc-CcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Q 015427 128 WGTAMVAMKEVLP-KAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGL 206 (407)
Q Consensus 128 ~~~~~~~~k~~~~-~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~s~ 206 (407)
||.+++..|...+ ..|+....+.|+..+.+++.++...+ ++++++.+.+..+.++..+++.++++|+++++++.
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~ 75 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR-----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGE 75 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc-----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence 7899999999876 57899999999999999888776543 34467778888888888889999999999999999
Q ss_pred HHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 015427 207 GSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVS 286 (407)
Q Consensus 207 a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~G~l~~l~sa~~~a~~~v~~r~~~ 286 (407)
++++.++.|+++.+++.+++|||+++++++|++++++|+.++..++ + .+....|+.++++++++|+.+.++.|+..
T Consensus 76 ~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~-~---~~~~~~G~~~~l~a~~~~a~~~~~~k~~~ 151 (260)
T TIGR00950 76 AALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDG-N---LSINPAGLLLGLGSGISFALGTVLYKRLV 151 (260)
T ss_pred hHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCC-c---ccccHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 9999999999999999999999999999999999999999987654 1 12235799999999999999999999998
Q ss_pred ccCChH--HHHHHHHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHhhhh
Q 015427 287 KYSDPV--MATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLT 364 (407)
Q Consensus 287 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~l~~~al~~~~~~~~s~~~ 364 (407)
++.++. ....+.+.++.++..+.....++.. ..+...|..+++.++++++++|.+|++++++.++.+++.+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~ 225 (260)
T TIGR00950 152 KKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP------QALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILA 225 (260)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC------CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 777744 4444667788888777776654332 23567788899999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 015427 365 FLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAI 398 (407)
Q Consensus 365 ~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~ 398 (407)
+++|+++++++++++||++++.+++|+++++.|+
T Consensus 226 ~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 226 LAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999986
No 7
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.98 E-value=1.3e-29 Score=242.89 Aligned_cols=285 Identities=13% Similarity=0.096 Sum_probs=225.6
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhhccCcC-HHHHHHHHHHHHHHHHHHHHHHhCCCCC-C--ChhhHHHHHHHHHHHHH
Q 015427 114 MLLEWAVLVSPFFFWGTAMVAMKEVLPKAG-TFFVAAFRLIPAGLLLITFASSQGRKLP-S--GFNAWVSIFLFALVDAS 189 (407)
Q Consensus 114 ~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~-p~~~~~~r~~~~~l~~~~~~~~~~~~~~-~--~~~~~~~~~~~g~~~~~ 189 (407)
+.+..++.+....+-......+|.+++.+| |+.++.+|++++.+++.+++....++.+ . .+++++.++..|+++..
T Consensus 47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~ 126 (350)
T PTZ00343 47 KWKLALLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLF 126 (350)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 455666666666666777788899999999 9999999999998877666543322222 2 23467788888888766
Q ss_pred HHHHHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhHHHHHH
Q 015427 190 CFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWML 269 (407)
Q Consensus 190 ~~~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~G~l~~l 269 (407)
. +...+.|+++++++.++++++++|+++++++++++|||+++.++++++++++|++++...+. +....|+++++
T Consensus 127 ~-~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~-----~~~~~G~~~~l 200 (350)
T PTZ00343 127 V-HFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKEL-----HFTWLAFWCAM 200 (350)
T ss_pred H-HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccc-----hhHHHHHHHHH
Confidence 4 55678999999999999999999999999999999999999999999999999999886432 22347999999
Q ss_pred HHHHHHHHHHHHHHhhccc-------CChHHHHHHHHHHHHHHHHHHHHHhcCCCccccc----ccCCHHHHHHHHHHHH
Q 015427 270 LAAQSMAVGTVMVRWVSKY-------SDPVMATGWHMVIGGLPLMVISVLNHDPVYGESV----KELTSSDILALLYTSI 338 (407)
Q Consensus 270 ~sa~~~a~~~v~~r~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ll~~g~ 338 (407)
++++++++++++.|+..++ .++.....+..+.++++++|...+.+.......+ ...+...+..+++ .+
T Consensus 201 ~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~-~i 279 (350)
T PTZ00343 201 LSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIF-KI 279 (350)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHH-HH
Confidence 9999999999999997764 3465666667889999999888765543211000 0111112222333 35
Q ss_pred HHHHHHHHHHHH----HhccCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccC
Q 015427 339 FGSAISYGVYFY----SATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 405 (407)
Q Consensus 339 ~~~~~~~~l~~~----al~~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~~~ 405 (407)
+.+++.+.+++. ++++.+|.+.++.++++|+++++++++++||++++.+++|+++++.|+++|++.|
T Consensus 280 ~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~k 350 (350)
T PTZ00343 280 FFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLFK 350 (350)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhcC
Confidence 667888888885 9999999999999999999999999999999999999999999999999998764
No 8
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.98 E-value=2.9e-29 Score=236.00 Aligned_cols=273 Identities=15% Similarity=0.122 Sum_probs=207.0
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCC-----CChhhHHHHHHHHHHH
Q 015427 113 GMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLP-----SGFNAWVSIFLFALVD 187 (407)
Q Consensus 113 ~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~ 187 (407)
++.+|.+++++++++||.+.++.|.. ++++|.++.++|+.++.+++.+++..+++... .+++++ .....+.++
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 82 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKI-FMLAVSAVL 82 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHH-HHHHHHHHH
Confidence 34678999999999999999999985 67999999999999999888777655432211 122222 334466667
Q ss_pred HHHHHHHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhHHHH
Q 015427 188 ASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWW 267 (407)
Q Consensus 188 ~~~~~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~G~l~ 267 (407)
...++.++++++++++++.++++.++.|+++.+++++++|||+++.+++|+++++.|+.++..++. +. .++
T Consensus 83 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~---~~------~~~ 153 (296)
T PRK15430 83 IGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFG---SL------PII 153 (296)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcC---Cc------cHH
Confidence 777899999999999999999999999999999999999999999999999999999999875421 10 246
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCh--HHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHHHHHHHHHH
Q 015427 268 MLLAAQSMAVGTVMVRWVSKYSDP--VMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISY 345 (407)
Q Consensus 268 ~l~sa~~~a~~~v~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~ 345 (407)
+++++++|+.|.+..|+..++... .....+....+.....+. ...+.. .....+...+..+++.+ +++.++|
T Consensus 154 ~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~g-~~t~i~~ 227 (296)
T PRK15430 154 ALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI---ADSSTS--HMGQNPMSLNLLLIAAG-IVTTVPL 227 (296)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH---ccCCcc--cccCCcHHHHHHHHHHH-HHHHHHH
Confidence 888999999999999997543322 222333333333222111 111110 01111222233344444 4688999
Q ss_pred HHHHHHhccCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 015427 346 GVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN 402 (407)
Q Consensus 346 ~l~~~al~~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~ 402 (407)
.+|++++++.++.+++++.+++|+++.+++++++||++++.+++|+++|+.|+.++.
T Consensus 228 ~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~ 284 (296)
T PRK15430 228 LCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFV 284 (296)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988876654
No 9
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.97 E-value=2.1e-28 Score=231.11 Aligned_cols=282 Identities=14% Similarity=0.107 Sum_probs=221.5
Q ss_pred HHHHHHHHHHHhHHHHHHhhccC-cCHHHHHHHHHHHHHHHHHHHHHH-hCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 015427 119 AVLVSPFFFWGTAMVAMKEVLPK-AGTFFVAAFRLIPAGLLLITFASS-QGRKLPSGFNAWVSIFLFALVDASCFQGFLA 196 (407)
Q Consensus 119 l~~~~~~~~~~~~~~~~k~~~~~-~~p~~~~~~r~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 196 (407)
++.+...++-....+.+|.+.++ .+|..++++|+.++.+.+.+.+.. .+++.+.++++++.++..|++. +..+.+.+
T Consensus 5 ~~~~~w~~~~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~ 83 (302)
T TIGR00817 5 LLFGLWYFLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVH-TIGHVTSN 83 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34445555555666788999988 559999999999998877666322 2233345678888899999985 66788999
Q ss_pred HHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhHHHHHHHHHHHHH
Q 015427 197 QGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMA 276 (407)
Q Consensus 197 ~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~G~l~~l~sa~~~a 276 (407)
+++++++++.++++.++.|+++++++++++|||+++.++++++++++|+++....+ .+....|++++++++++|+
T Consensus 84 ~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~-----~~~~~~G~~~~l~a~~~~a 158 (302)
T TIGR00817 84 VSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTE-----LSFNWAGFLSAMISNITFV 158 (302)
T ss_pred HHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCc-----ccccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998765322 1223469999999999999
Q ss_pred HHHHHHHhhcc--cCChHHHHHHHHHHHHHHHHHHHHHhcCCCccc-cccc----CCH-HHHHHHHHHHHHHHHHHHHHH
Q 015427 277 VGTVMVRWVSK--YSDPVMATGWHMVIGGLPLMVISVLNHDPVYGE-SVKE----LTS-SDILALLYTSIFGSAISYGVY 348 (407)
Q Consensus 277 ~~~v~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~-~~~~~ll~~g~~~~~~~~~l~ 348 (407)
++.++.|+..+ +.++.....+++..+++.+.|.....++..... .+.. ... ..+...+..++.+....+.++
T Consensus 159 ~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (302)
T TIGR00817 159 SRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVA 238 (302)
T ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887 789999999999999999999887765432110 0000 011 112112222222333333456
Q ss_pred HHHhccCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccCC
Q 015427 349 FYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS 406 (407)
Q Consensus 349 ~~al~~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~~~~ 406 (407)
++++++.+|.++++..+++|+++++++++++||+++..+++|++++++|++++++.|+
T Consensus 239 ~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~ 296 (302)
T TIGR00817 239 FMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKA 296 (302)
T ss_pred HHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999999999999999999999987653
No 10
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.96 E-value=2.6e-27 Score=221.21 Aligned_cols=272 Identities=18% Similarity=0.227 Sum_probs=208.8
Q ss_pred HHHHHHHHHHHHhHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHh--CCCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 015427 118 WAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQ--GRKLPSGFNAWVSIFLFALVDASCFQGFL 195 (407)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 195 (407)
.++.++++++|+..+...|...++.++. .++++..+.+++.|+...+ +++.+..+++++..+..+.++...++.++
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGL 80 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999666665553 4677777777777777654 23333334555556666666677788899
Q ss_pred HHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhHHHHHHHHHHHH
Q 015427 196 AQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSM 275 (407)
Q Consensus 196 ~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~G~l~~l~sa~~~ 275 (407)
++++++.+++.++++.++.|+++.+++++++|||+++.+++|+.++++|+.++..++.+. ....|+.++++++++|
T Consensus 81 ~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~----~~~~g~~~~l~aal~~ 156 (281)
T TIGR03340 81 AQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQ----HRRKAYAWALAAALGT 156 (281)
T ss_pred HHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccc----cchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988654221 1236888999999999
Q ss_pred HHHHHHHHhhcccCChHH----HHHHHHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015427 276 AVGTVMVRWVSKYSDPVM----ATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYS 351 (407)
Q Consensus 276 a~~~v~~r~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~l~~~a 351 (407)
++|.+..|+..++.++.. ...+.....++...+.....+... .......+..+++.++++++++|.+|+++
T Consensus 157 a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~s~l~~~l~~~a 231 (281)
T TIGR03340 157 AIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS-----MFPYARQILPSATLGGLMIGGAYALVLWA 231 (281)
T ss_pred HHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccc-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998765544322 222222222122222221112211 11223355667888889999999999999
Q ss_pred hccCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 015427 352 ATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYL 400 (407)
Q Consensus 352 l~~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l 400 (407)
+++.++++++.+.+++|+++.+++++++||+++..+++|++++++|+++
T Consensus 232 l~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 232 MTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 9999999999999999999999999999999999999999999999976
No 11
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.96 E-value=7e-31 Score=227.94 Aligned_cols=282 Identities=16% Similarity=0.156 Sum_probs=233.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 015427 115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGF 194 (407)
Q Consensus 115 ~~~~l~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 194 (407)
.+|.+++.++.++-.++.+..|.. +.+|.+..-.|+++-.++..|...+.+...-.+...+.+++++|+.+.+ +..+
T Consensus 37 ~~gl~l~~vs~ff~~~~vv~t~~~--e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~t-gvml 113 (346)
T KOG4510|consen 37 NLGLLLLTVSYFFNSCMVVSTKVL--ENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFT-GVML 113 (346)
T ss_pred ccCceehhhHHHHhhHHHhhhhhh--ccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhh-HHHH
Confidence 456777777855555666555553 5778889999988888888887766655542233445567788888877 5558
Q ss_pred HHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCCCC---------CCCcchhhhHH
Q 015427 195 LAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFD---------ESNSSLWGSGE 265 (407)
Q Consensus 195 ~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~---------~~~~~~~~~G~ 265 (407)
.|||++|++.++|++|.+++|+|+.+++|+++|||+++.+.++..+.+.||+++.+|.+- .........|.
T Consensus 114 myya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~gt 193 (346)
T KOG4510|consen 114 MYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPGT 193 (346)
T ss_pred HHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCch
Confidence 899999999999999999999999999999999999999999999999999999998731 11112345789
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHHHHHHHHHH
Q 015427 266 WWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISY 345 (407)
Q Consensus 266 l~~l~sa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~ 345 (407)
..++.++++.+-.+++.|+++|+.|......|+.+++.+..++.....+... .+....+|+..+.+|++ +.+++
T Consensus 194 ~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~s~I~~~~ig~~~-----lP~cgkdr~l~~~lGvf-gfigQ 267 (346)
T KOG4510|consen 194 VAAISSVLFGASVYIILRYIGKNAHAIMSVSYFSLITLVVSLIGCASIGAVQ-----LPHCGKDRWLFVNLGVF-GFIGQ 267 (346)
T ss_pred HHHHHhHhhhhhHHHHHHHhhccccEEEEehHHHHHHHHHHHHHHhhcccee-----cCccccceEEEEEehhh-hhHHH
Confidence 9999999999999999999999999998899999999998888776665432 35577888888889877 45677
Q ss_pred HHHHHHhccCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccC
Q 015427 346 GVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 405 (407)
Q Consensus 346 ~l~~~al~~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~~~ 405 (407)
.+.++++|++.+..++++.+++.+++.++++++||+.|+++.++|+++|+.+.++..+.|
T Consensus 268 IllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k 327 (346)
T KOG4510|consen 268 ILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKK 327 (346)
T ss_pred HHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999998876544
No 12
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.95 E-value=2.8e-25 Score=204.86 Aligned_cols=246 Identities=13% Similarity=0.035 Sum_probs=184.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCC------CC-CChhh-HHHHHHHHHHH
Q 015427 116 LEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRK------LP-SGFNA-WVSIFLFALVD 187 (407)
Q Consensus 116 ~~~l~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~------~~-~~~~~-~~~~~~~g~~~ 187 (407)
+|++++++++++||.+.++.|. .++++|.++.++|++++.+++++++..++++ .+ .++++ +....+.|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~- 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL- 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH-
Confidence 4788999999999999999998 4679999999999999998887776443321 11 11223 2334555554
Q ss_pred HHHHHHHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhHHHH
Q 015427 188 ASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWW 267 (407)
Q Consensus 188 ~~~~~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~G~l~ 267 (407)
..+++.++++|++++++++++++.++.|+++++++++++|||++++++++++++++|+.++..++.+ . .++
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~--~-------~~~ 150 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGS--L-------PWE 150 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCC--c-------hHH
Confidence 5668889999999999999999999999999999999999999999999999999999998764211 1 146
Q ss_pred HHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHH
Q 015427 268 MLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGV 347 (407)
Q Consensus 268 ~l~sa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~l 347 (407)
+++++++|++|.+..|+..++ +....... .+.......+.....+.+.. ........|.++++.|++ +.++|.+
T Consensus 151 ~l~aa~~~a~~~i~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~g~~-t~i~~~l 224 (256)
T TIGR00688 151 ALVLAFSFTAYGLIRKALKNT-DLAGFCLE-TLSLMPVAIYYLLQTDFATV---QQTNPFPIWLLLVLAGLI-TGTPLLA 224 (256)
T ss_pred HHHHHHHHHHHHHHHhhcCCC-CcchHHHH-HHHHHHHHHHHHHHhccCcc---cccCchhHHHHHHHHHHH-HHHHHHH
Confidence 789999999999999998654 32222211 11222222212111121110 011122478888888865 8899999
Q ss_pred HHHHhccCChhhHhhhhhhhHHHHHHHHHHH
Q 015427 348 YFYSATKGSLTKLSSLTFLTPMFASIFGFLY 378 (407)
Q Consensus 348 ~~~al~~~~~~~~s~~~~~~pv~a~i~~~~~ 378 (407)
+++++++.++++++++.|++|+++.+++.++
T Consensus 225 ~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 225 FVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999764
No 13
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.95 E-value=9.6e-25 Score=204.10 Aligned_cols=287 Identities=17% Similarity=0.117 Sum_probs=230.9
Q ss_pred HHHHHHH-HHHHHHHHhHHHHHHhhccCcC-HHHHHHHHHHHHHHHHHHHHHHhCCCC---CCChhhHHHHHHHHHHHHH
Q 015427 115 LLEWAVL-VSPFFFWGTAMVAMKEVLPKAG-TFFVAAFRLIPAGLLLITFASSQGRKL---PSGFNAWVSIFLFALVDAS 189 (407)
Q Consensus 115 ~~~~l~~-~~~~~~~~~~~~~~k~~~~~~~-p~~~~~~r~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~ 189 (407)
.+..++. +++.+.-+++.....+..++.+ |....++.+..-.++..++..+++.+. +..+++|++.++.+++...
T Consensus 12 ~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~ 91 (334)
T PF06027_consen 12 WIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVE 91 (334)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHH
Confidence 3344444 3444444444444444444555 888889999888888877766654432 2345788899999999877
Q ss_pred HHHHHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCCCCC----CCcchhhhHH
Q 015427 190 CFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDE----SNSSLWGSGE 265 (407)
Q Consensus 190 ~~~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~----~~~~~~~~G~ 265 (407)
++.+.+.|++|++++.++++..+..+++.+++++++|||+++.+++|+++|++|++++...|... .+.++..+|+
T Consensus 92 -aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GD 170 (334)
T PF06027_consen 92 -ANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGD 170 (334)
T ss_pred -HHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhH
Confidence 55599999999999999999999999999999999999999999999999999999998876222 1234567999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHHHHHHHHHH
Q 015427 266 WWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISY 345 (407)
Q Consensus 266 l~~l~sa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~ 345 (407)
++++++++.||+++++.++..++.+.....+...+++.++..+...+.+..... ..+++...+..++..+ ++..+-|
T Consensus 171 ll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~--~~~w~~~~~~~~v~~~-~~lf~~y 247 (334)
T PF06027_consen 171 LLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIE--SIHWTSQVIGLLVGYA-LCLFLFY 247 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhh--ccCCChhhHHHHHHHH-HHHHHHH
Confidence 999999999999999999999999999999999999999999988887766542 2345555555444443 4566667
Q ss_pred HHHHHHhccCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccC
Q 015427 346 GVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 405 (407)
Q Consensus 346 ~l~~~al~~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~~~ 405 (407)
.+....+++.+|+...+-..+..+++++++++++|+++++..++|.++|+.|.++++..+
T Consensus 248 ~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~ 307 (334)
T PF06027_consen 248 SLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE 307 (334)
T ss_pred HHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence 777888999999999999999999999999999999999999999999999999998754
No 14
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.95 E-value=4.3e-24 Score=200.32 Aligned_cols=283 Identities=29% Similarity=0.427 Sum_probs=226.2
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhhccC-cCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHH
Q 015427 114 MLLEWAVLVSPFFFWGTAMVAMKEVLPK-AGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQ 192 (407)
Q Consensus 114 ~~~~~l~~~~~~~~~~~~~~~~k~~~~~-~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 192 (407)
...+....+...+.|+......|...++ .++....+.|...+.+...+....++.......+.+++..+.+.+.....+
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPF 84 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHH
Confidence 3456677788889999999999998887 667777788999999885444443321122222235566777777778888
Q ss_pred HHHHHHhhccchhhHHHHhhcHHHHHHHHHH-HHcCCcchHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhHHHHHHHH
Q 015427 193 GFLAQGLQRTSAGLGSVIIDSQPLSVAVLAA-LLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLA 271 (407)
Q Consensus 193 ~~~~~al~~~~~s~a~~i~~~~p~~~~lla~-l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~G~l~~l~s 271 (407)
.+++.++++++++.++++.++.|+++.+++. +++|||+++.+++++++++.|+.++..++...... ...|+++++++
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~--~~~g~~~~l~a 162 (292)
T COG0697 85 LLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGIL--SLLGLLLALAA 162 (292)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhH--HHHHHHHHHHH
Confidence 9999999999999999999999999999997 77799999999999999999999999877433222 45899999999
Q ss_pred HHHHHHHHHHHHhhcccCChHHHHH-HHHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 015427 272 AQSMAVGTVMVRWVSKYSDPVMATG-WHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFY 350 (407)
Q Consensus 272 a~~~a~~~v~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~l~~~ 350 (407)
+++++++.+..|+.. +.++..... +... ............... .+.+...+..+.+.|++++++++.++++
T Consensus 163 ~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~i~~~~~~~ 234 (292)
T COG0697 163 ALLWALYTALVKRLS-RLGPVTLALLLQLL--LALLLLLLFFLSGFG-----APILSRAWLLLLYLGVFSTGLAYLLWYY 234 (292)
T ss_pred HHHHHHHHHHHHHhc-CCChHHHHHHHHHH--HHHHHHHHHHhcccc-----ccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987 666666555 3333 112221111111110 2456778899999999999999999999
Q ss_pred HhccCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccCC
Q 015427 351 SATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS 406 (407)
Q Consensus 351 al~~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~~~~ 406 (407)
++++.++..++++.+++|++++++++++++|+++..+++|+++++.|+++..++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 290 (292)
T COG0697 235 ALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLRAR 290 (292)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999987654
No 15
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.92 E-value=3.5e-22 Score=172.99 Aligned_cols=268 Identities=21% Similarity=0.235 Sum_probs=230.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 015427 117 EWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLA 196 (407)
Q Consensus 117 ~~l~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 196 (407)
.++.++.+++..-....+.|.+...+++...+.+|..++.+++++++...++ +..+++++.++.+|+.... .|.+||
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~vG~~g~t~lRl~~aaLIll~l~RPwr~--r~~~~~~~~~~~yGvsLg~-MNl~FY 89 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPLVGAAGVTALRLAIAALILLALFRPWRR--RLSKPQRLALLAYGVSLGG-MNLLFY 89 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccccChhhHHHHHHHHHHHHHHHHhhHHHh--ccChhhhHHHHHHHHHHHH-HHHHHH
Confidence 4667777777777777888999999999999999999999999988765543 4566889999999997655 677999
Q ss_pred HHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhHHHHHHHHHHHHH
Q 015427 197 QGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMA 276 (407)
Q Consensus 197 ~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~G~l~~l~sa~~~a 276 (407)
.+++++|.+.+..+-++.|+.+.+++ .-+..+.+.+.+++.|+.++.-.+.+.+ ..+..|..+++.++.+|+
T Consensus 90 ~si~riPlGiAVAiEF~GPL~vA~~~------sRr~~d~vwvaLAvlGi~lL~p~~~~~~--~lDp~Gv~~Al~AG~~Wa 161 (292)
T COG5006 90 LSIERIPLGIAVAIEFTGPLAVALLS------SRRLRDFVWVALAVLGIWLLLPLGQSVW--SLDPVGVALALGAGACWA 161 (292)
T ss_pred HHHHhccchhhhhhhhccHHHHHHHh------ccchhhHHHHHHHHHHHHhheeccCCcC--cCCHHHHHHHHHHhHHHH
Confidence 99999999999999999999998877 4556677888888999988876542322 234489999999999999
Q ss_pred HHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 015427 277 VGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGS 356 (407)
Q Consensus 277 ~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~l~~~al~~~~ 356 (407)
.|.+..||..+..+...-....+.+++++.+|+.....++. -.++.....-+..+++.+++.|.+.+.++++.+
T Consensus 162 ~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~------l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp 235 (292)
T COG5006 162 LYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPA------LFSPSLLPLALGVAVLSSALPYSLEMIALRRLP 235 (292)
T ss_pred HHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchh------hcChHHHHHHHHHHHHhcccchHHHHHHHhhCC
Confidence 99999999987778888889999999999999988766654 346677777888999999999999999999999
Q ss_pred hhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Q 015427 357 LTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLV 401 (407)
Q Consensus 357 ~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~ 401 (407)
+..++++..+||.++.+.|++++||.++..||+|++.|+.+..-.
T Consensus 236 ~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~ 280 (292)
T COG5006 236 ARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGS 280 (292)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999887633
No 16
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.91 E-value=1.3e-21 Score=182.89 Aligned_cols=272 Identities=16% Similarity=0.128 Sum_probs=208.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 015427 117 EWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLA 196 (407)
Q Consensus 117 ~~l~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 196 (407)
++++.++++++||+..+..|... +.++.+.. |..++.+++..+....+.+....++.+...++.|++ ...++.+++
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~-g~~~~~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~-w~ig~~~~~ 77 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG-GGPYSQTL--GTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAF-WALGQINQF 77 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC-CCHHHHHH--HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHH-HHhhhhhHH
Confidence 46788999999999999999865 67766654 787787777665554433222223444445555554 455778999
Q ss_pred HHhhccchhhHHHHhh-cHHHHHHHHHHHHcCCcchHHH----HHHHHHHHHHHHHhhcCCCCCCC-c--chhhhHHHHH
Q 015427 197 QGLQRTSAGLGSVIID-SQPLSVAVLAALLFGESIGLVG----AGGLVLGVIGLLLLEAPAFDESN-S--SLWGSGEWWM 268 (407)
Q Consensus 197 ~al~~~~~s~a~~i~~-~~p~~~~lla~l~l~e~~~~~~----~~~~~l~~~Gv~l~~~~~~~~~~-~--~~~~~G~l~~ 268 (407)
.++++++++.+..+.. +.+++..+++.+++||+.++.+ ++|++++++|+.++...+.+... . ....+|+.++
T Consensus 78 ~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~~~ 157 (290)
T TIGR00776 78 KSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGILLL 157 (290)
T ss_pred HHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHHHH
Confidence 9999999999999977 8899999999999999999999 99999999999998775422211 0 2235799999
Q ss_pred HHHHHHHHHHHHHHHhhcccCChHHHHHHHHH----HHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHHHHHHHHH
Q 015427 269 LLAAQSMAVGTVMVRWVSKYSDPVMATGWHMV----IGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAIS 344 (407)
Q Consensus 269 l~sa~~~a~~~v~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~ 344 (407)
++++++|+.|.+..|+.. .++....+.+.. .+.++..+. ... .+...+.++..+..|++ ..++
T Consensus 158 l~sg~~y~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~---~~~-------~~~~~~~~~~~~~~Gi~-~~ia 224 (290)
T TIGR00776 158 LMSTIGYLVYVVVAKAFG--VDGLSVLLPQAIGMVIGGIIFNLGH---ILA-------KPLKKYAILLNILPGLM-WGIG 224 (290)
T ss_pred HHHHHHHHHHHHHHHHcC--CCcceehhHHHHHHHHHHHHHHHHH---hcc-------cchHHHHHHHHHHHHHH-HHHH
Confidence 999999999999999863 677776444444 333333222 111 11233344444447777 7999
Q ss_pred HHHHHHHhc-cCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHH----HHHHHHHHHHHHhcccC
Q 015427 345 YGVYFYSAT-KGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQL----VGAAVTVVAIYLVNFRG 405 (407)
Q Consensus 345 ~~l~~~al~-~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~----iG~~lil~g~~l~~~~~ 405 (407)
+.+|..+.+ +.++++.+++.+++|+.+.+++++++||+.++.++ +|.++++.|+.+....|
T Consensus 225 ~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~~ 290 (290)
T TIGR00776 225 NFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIGK 290 (290)
T ss_pred HHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhccC
Confidence 999999999 99999999999999999999999999999999999 99999999999887654
No 17
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.90 E-value=1.4e-20 Score=167.74 Aligned_cols=274 Identities=16% Similarity=0.133 Sum_probs=226.0
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCC-----CCChhhHHHHHHHHHHHH
Q 015427 114 MLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKL-----PSGFNAWVSIFLFALVDA 188 (407)
Q Consensus 114 ~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~ 188 (407)
..+|+++.+.+.++||......|. .+++|+.++...|.+.+..+++......++.. .++++.+....+.+.+ .
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kl-l~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l-i 82 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKL-LEPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL-I 82 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH-H
Confidence 467899999999999999999997 58999999999999999998887766654432 2344555555555554 5
Q ss_pred HHHHHHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhHHHHH
Q 015427 189 SCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWM 268 (407)
Q Consensus 189 ~~~~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~G~l~~ 268 (407)
..+...|.+|..+..+-+++.=.+..|++.++++++++|||+++.|++++.++.+||........+- -..+
T Consensus 83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~l---------pwva 153 (293)
T COG2962 83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSL---------PWVA 153 (293)
T ss_pred HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCC---------cHHH
Confidence 6699999999999999999999999999999999999999999999999999999999988753111 1357
Q ss_pred HHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHH
Q 015427 269 LLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVY 348 (407)
Q Consensus 269 l~sa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~l~ 348 (407)
+.=+++|+.|...-|+.. .++.+-....++.-..+...+.+..+.... ...+.+...+..++..| ..|+++..++
T Consensus 154 l~la~sf~~Ygl~RK~~~--v~a~~g~~lE~l~l~p~al~yl~~l~~~~~--~~~~~~~~~~~LLv~aG-~vTavpL~lf 228 (293)
T COG2962 154 LALALSFGLYGLLRKKLK--VDALTGLTLETLLLLPVALIYLLFLADSGQ--FLQQNANSLWLLLVLAG-LVTAVPLLLF 228 (293)
T ss_pred HHHHHHHHHHHHHHHhcC--CchHHhHHHHHHHHhHHHHHHHHHHhcCch--hhhcCCchHHHHHHHhh-HHHHHHHHHH
Confidence 777899999998877754 577777777777777777777776665431 11224555666667676 4588999999
Q ss_pred HHHhccCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcc
Q 015427 349 FYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF 403 (407)
Q Consensus 349 ~~al~~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~ 403 (407)
..+-++.+-++.+.++|.+|..-.+++++++||+++..+++..++|.+|.+++..
T Consensus 229 ~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~ 283 (293)
T COG2962 229 AAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSI 283 (293)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988763
No 18
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.87 E-value=5.3e-22 Score=183.29 Aligned_cols=283 Identities=12% Similarity=0.068 Sum_probs=225.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhcc--CcC-HHHHHHHHHHHHHHHHHHHHHHhCCCCCC--ChhhHHHHHHHHHHHHHH
Q 015427 116 LEWAVLVSPFFFWGTAMVAMKEVLP--KAG-TFFVAAFRLIPAGLLLITFASSQGRKLPS--GFNAWVSIFLFALVDASC 190 (407)
Q Consensus 116 ~~~l~~~~~~~~~~~~~~~~k~~~~--~~~-p~~~~~~r~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~ 190 (407)
...+......++-......+|.+++ +.+ |..++.++...+.+.++.....+..+.++ ++..+..++..|++. ++
T Consensus 17 ~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~-~~ 95 (316)
T KOG1441|consen 17 RIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVF-CI 95 (316)
T ss_pred HHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHH-HH
Confidence 3344444444455555566698888 666 99999999999999888887776655433 445677777777764 55
Q ss_pred HHHHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhHHHHHHH
Q 015427 191 FQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLL 270 (407)
Q Consensus 191 ~~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~G~l~~l~ 270 (407)
+..+.+.|+++.+++.+++++.++|++++++++++.+|+.+...++.+++...||.+.+..+.+ .+..|.+.++.
T Consensus 96 ~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~-----fn~~G~i~a~~ 170 (316)
T KOG1441|consen 96 SHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELS-----FNLFGFISAMI 170 (316)
T ss_pred HHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeecccc-----ccHHHHHHHHH
Confidence 8889999999999999999999999999999999999999999999999999999999885533 34589999999
Q ss_pred HHHHHHHHHHHHHhhcc----cCChHHHHHHHHHHHHHHHH-HHHHHhcCCCcc-cccccCCHHHHHHHHHHHHHHHHHH
Q 015427 271 AAQSMAVGTVMVRWVSK----YSDPVMATGWHMVIGGLPLM-VISVLNHDPVYG-ESVKELTSSDILALLYTSIFGSAIS 344 (407)
Q Consensus 271 sa~~~a~~~v~~r~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~g~~~~~~~ 344 (407)
+.+.++.++++.|+..+ +.++.++..+..-++.+.++ |+....++.... .....++...+..++ .. ++....
T Consensus 171 s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s-v~~f~~ 248 (316)
T KOG1441|consen 171 SNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLL-NS-VLAFLL 248 (316)
T ss_pred HHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHH-HH-HHHHHH
Confidence 99999999999998763 46899999999999999888 877776665430 001133333333333 33 344444
Q ss_pred HHHHHHHhccCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccCC
Q 015427 345 YGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS 406 (407)
Q Consensus 345 ~~l~~~al~~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~~~~ 406 (407)
+...+..+.+++|.+.++.+.++.++.++.++++|++++++.+.+|.++.++|+++|++.|.
T Consensus 249 Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~ 310 (316)
T KOG1441|consen 249 NLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKL 310 (316)
T ss_pred HHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 55667889999999999999999999999999999999999999999999999999998764
No 19
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.83 E-value=1.1e-17 Score=157.91 Aligned_cols=261 Identities=18% Similarity=0.153 Sum_probs=209.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhcHHHHHHHHH
Q 015427 143 GTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLA 222 (407)
Q Consensus 143 ~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~s~a~~i~~~~p~~~~lla 222 (407)
.|..+++.++....+...+.....+++ +.++..++..+..+++... +..+.+.|+++++...-.+++.+.|+.+++++
T Consensus 31 ~~~~lt~~q~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~ 108 (303)
T PF08449_consen 31 FPLFLTFVQFAFNALFSFILLSLFKFP-KSRKIPLKKYAILSFLFFL-ASVLSNAALKYISYPTQIVFKSSKPIPVMILG 108 (303)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhcccc-CCCcChHHHHHHHHHHHHH-HHHHHHHHHHhCChHHHHHHhhhHHHHHHHHH
Confidence 388999999999999888777666522 3333556667777776544 77799999999999999999999999999999
Q ss_pred HHHcCCcchHHHHHHHHHHHHHHHHhhcCCCCCCCcc-----hhhhHHHHHHHHHHHHHHHHHHHHhhcc--cCChHHHH
Q 015427 223 ALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSS-----LWGSGEWWMLLAAQSMAVGTVMVRWVSK--YSDPVMAT 295 (407)
Q Consensus 223 ~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~-----~~~~G~l~~l~sa~~~a~~~v~~r~~~~--~~~~~~~~ 295 (407)
.+++|+|++..+++++++..+|+++....+.+.+..+ ....|+.+.+++.++.+...++.++..+ +.++.+..
T Consensus 109 ~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~m 188 (303)
T PF08449_consen 109 VLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELM 188 (303)
T ss_pred HHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 9999999999999999999999999988763222111 1224999999999999999999999765 45778899
Q ss_pred HHHHHHHHHHHHHHHHH--hcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHhhhhhhhHHHHHH
Q 015427 296 GWHMVIGGLPLMVISVL--NHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASI 373 (407)
Q Consensus 296 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~~~pv~a~i 373 (407)
++..+.+.++..+..+. .++...........+..+..++... ++..++....+...++.++...+++..+.-+.+++
T Consensus 189 fy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s-~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sil 267 (303)
T PF08449_consen 189 FYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFS-LTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSIL 267 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHH
Confidence 99999999988888777 3332211112223344455555454 55666677778889999999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHhcccCC
Q 015427 374 FGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS 406 (407)
Q Consensus 374 ~~~~~~~e~~~~~~~iG~~lil~g~~l~~~~~~ 406 (407)
+++++||+++++.+|+|.++++.|..++.+.|+
T Consensus 268 lS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~ 300 (303)
T PF08449_consen 268 LSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKK 300 (303)
T ss_pred HHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhc
Confidence 999999999999999999999999999988664
No 20
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.82 E-value=6.6e-19 Score=160.96 Aligned_cols=294 Identities=16% Similarity=0.108 Sum_probs=226.1
Q ss_pred chhhHHHHHHHHHHHHHHHhHHHHHHhhccCcC---HHHHHHHHHHHHHHHHHHHH------HHh-CC------------
Q 015427 111 ELGMLLEWAVLVSPFFFWGTAMVAMKEVLPKAG---TFFVAAFRLIPAGLLLITFA------SSQ-GR------------ 168 (407)
Q Consensus 111 ~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~---p~~~~~~r~~~~~l~~~~~~------~~~-~~------------ 168 (407)
..+...|+.++++..++|-.+.-+++.+.++-. |+..+++....-.+.+.++. ... ++
T Consensus 9 ~~r~~lGl~lL~~V~viWV~SSeLT~~if~~~~f~kPFfiTY~~ts~fivYL~~~~~~d~~~~~~~~R~~~~~~~~~~e~ 88 (416)
T KOG2765|consen 9 RWRWTLGLVLLLLVVVIWVASSELTQSIFEDYNFRKPFFITYLKTSLFIVYLPPFILIDAPWRILETRSKRSNHAIMEEA 88 (416)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcccCCceeEeeecccceehhhhhhhhhcchhhhhhhhccccchhhhhhh
Confidence 345678999999999999999999998877533 88777766555555444422 110 00
Q ss_pred ---------------------------------C----------------CCCChh------------hH-HHHHHHHHH
Q 015427 169 ---------------------------------K----------------LPSGFN------------AW-VSIFLFALV 186 (407)
Q Consensus 169 ---------------------------------~----------------~~~~~~------------~~-~~~~~~g~~ 186 (407)
. .+.+.+ +. ...+..+.+
T Consensus 89 d~e~y~~~~~~~~~~~~~l~~~~~~~~~~~~l~s~~~~~~~s~~~e~~~~~~~~~rs~l~~~~~~t~~~~ak~sl~fc~l 168 (416)
T KOG2765|consen 89 DAEGYFSACTTDKTMESGLSGPESVPDKSPLLGSGEEEKPESTNLEVREKANTKKRSNLKERGKLTATQTAKLSLFFCPL 168 (416)
T ss_pred hhhccccccccccccccccCCceeeeccccccccccccCCCCccccccccCCcccccchhhhhhhHHHHHHHHHHHHHHH
Confidence 0 000011 22 223444555
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCCCC---CCCcchhhh
Q 015427 187 DASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFD---ESNSSLWGS 263 (407)
Q Consensus 187 ~~~~~~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~---~~~~~~~~~ 263 (407)
... .+..++.|+.+++++..+++..++-+|+.+++.++.+||++..+.++++++++|+++++..+.. +........
T Consensus 169 WF~-anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~ll 247 (416)
T KOG2765|consen 169 WFL-ANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRPLL 247 (416)
T ss_pred HHH-HHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccchhH
Confidence 544 6668999999999999999999999999999999999999999999999999999999987632 223334568
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccC----ChHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHHHH
Q 015427 264 GEWWMLLAAQSMAVGTVMVRWVSKYS----DPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIF 339 (407)
Q Consensus 264 G~l~~l~sa~~~a~~~v~~r~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~ 339 (407)
|+++++++|+.||+|.++.|+...++ +.-...++..++..+++.|..++.+.... +.+.-++......++..+++
T Consensus 248 G~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~-e~F~lP~~~q~~~vv~~~li 326 (416)
T KOG2765|consen 248 GNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGE-ERFELPSSTQFSLVVFNNLI 326 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhcc-CcccCCCCceeEeeeHhhHH
Confidence 99999999999999999999865443 55556667777777777766655433211 12233455566667788899
Q ss_pred HHHHHHHHHHHHhccCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccCC
Q 015427 340 GSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS 406 (407)
Q Consensus 340 ~~~~~~~l~~~al~~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~~~~ 406 (407)
+++++-.+|.+|+-..+|.++.+...++...+++.+.++-|..+++.+++|++.|++|.+++++..+
T Consensus 327 gtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 327 GTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred HHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 9999999999999999999999999999999999999999999999999999999999999987643
No 21
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.72 E-value=2.1e-18 Score=149.50 Aligned_cols=280 Identities=16% Similarity=0.138 Sum_probs=223.2
Q ss_pred HHHHHHH-HHHHHHHHhHHHHHHhhccCcC-HHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHH
Q 015427 115 LLEWAVL-VSPFFFWGTAMVAMKEVLPKAG-TFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQ 192 (407)
Q Consensus 115 ~~~~l~~-~~~~~~~~~~~~~~k~~~~~~~-p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 192 (407)
+.++.+. +++.++.+....-..++-++++ |...+|+.+..-.++..+++.++++. ....|++.++.+++....++
T Consensus 17 li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~~---~~~~~~hYilla~~DVEaNy 93 (336)
T KOG2766|consen 17 LIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRKY---IKAKWRHYILLAFVDVEANY 93 (336)
T ss_pred hheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhHH---HHHHHHHhhheeEEeecccE
Confidence 4444433 5666666666666666656566 99999999999999999999887633 23566778888988877554
Q ss_pred HHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCC---CCCCCcchhhhHHHHHH
Q 015427 193 GFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA---FDESNSSLWGSGEWWML 269 (407)
Q Consensus 193 ~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~---~~~~~~~~~~~G~l~~l 269 (407)
+...|.||++...+..+-......+.+++|++++.|....++.|+++|++|++++...+ .+..+.+...+|+.+.+
T Consensus 94 -~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi 172 (336)
T KOG2766|consen 94 -FVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVI 172 (336)
T ss_pred -EEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEE
Confidence 77899999999999999999999999999999999999999999999999999998876 23334556679999999
Q ss_pred HHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 015427 270 LAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYF 349 (407)
Q Consensus 270 ~sa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~l~~ 349 (407)
+++-+||+.++..+.+.|+.+..+++....++++++..+. ++.+.... ...+++......+. ..++..+-|.+..
T Consensus 173 ~GATlYaVSNv~EEflvkn~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~--~tl~w~~~i~~yl~--f~L~MFllYsl~p 247 (336)
T KOG2766|consen 173 AGATLYAVSNVSEEFLVKNADRVELMGFLGLFGAIISAIQ-FIFERHHV--STLHWDSAIFLYLR--FALTMFLLYSLAP 247 (336)
T ss_pred ecceeeeeccccHHHHHhcCcHHHHHHHHHHHHHHHHHHH-Hhhhccce--eeEeehHHHHHHHH--HHHHHHHHHHhhH
Confidence 9999999999999999999999999999999999999998 44443322 22344433222222 2344555555656
Q ss_pred HHhccCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccC
Q 015427 350 YSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 405 (407)
Q Consensus 350 ~al~~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~~~ 405 (407)
.-++.-+++...+-..+.-.|+++. ..||.+.++...+..+.+..|.++|..++
T Consensus 248 il~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re 301 (336)
T KOG2766|consen 248 ILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTRE 301 (336)
T ss_pred HheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeeccc
Confidence 6788889999988889999999988 67899999999999999999999987654
No 22
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.67 E-value=7.6e-16 Score=119.86 Aligned_cols=133 Identities=20% Similarity=0.225 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC---ChhhHHHHHHHHHHHHHHHHH
Q 015427 117 EWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPS---GFNAWVSIFLFALVDASCFQG 193 (407)
Q Consensus 117 ~~l~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~ 193 (407)
..++.++++++++...++.|...+++||...+++|.++..+++..++...++.... ..|.|..+.+.|.. ...+..
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla-~glswl 82 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLA-GGLSWL 82 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHH-HHHHHH
Confidence 46788999999999999999999999999999999999999999998888776544 66888888888865 466888
Q ss_pred HHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhc
Q 015427 194 FLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEA 250 (407)
Q Consensus 194 ~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~ 250 (407)
+||+|++...++...++..++|+++++++++++|||++..+|+|++++.+|++++..
T Consensus 83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 999999999999999999999999999999999999999999999999999988754
No 23
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.59 E-value=2.2e-14 Score=111.74 Aligned_cols=137 Identities=20% Similarity=0.319 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHHHHHHHH
Q 015427 264 GEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAI 343 (407)
Q Consensus 264 G~l~~l~sa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~ 343 (407)
...+++++++.+++..++.|-..++.||...+....+...+.+..+....+.... ....+...|..++.-| +.+++
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~---~~~~~~k~~lflilSG-la~gl 79 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQA---GGEIGPKSWLFLILSG-LAGGL 79 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceec---ccccCcceehhhhHHH-HHHHH
Confidence 5689999999999999999999999999999999999999888888888776542 2235778888787777 77899
Q ss_pred HHHHHHHHhccCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccc
Q 015427 344 SYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFR 404 (407)
Q Consensus 344 ~~~l~~~al~~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~~ 404 (407)
+..+|++|++..+++++.++.-+.|+++++++++++||+++..+++|+++|++|++++.++
T Consensus 80 swl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~~ 140 (140)
T COG2510 80 SWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSLR 140 (140)
T ss_pred HHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEecC
Confidence 9999999999999999999999999999999999999999999999999999999988753
No 24
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.59 E-value=3.6e-13 Score=120.47 Aligned_cols=263 Identities=14% Similarity=0.105 Sum_probs=199.7
Q ss_pred HhhccCcC-HHHHHHHHHHHHHHHHHHHHHHhCCC-----CCCChhhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHH
Q 015427 136 KEVLPKAG-TFFVAAFRLIPAGLLLITFASSQGRK-----LPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSV 209 (407)
Q Consensus 136 k~~~~~~~-p~~~~~~r~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~s~a~~ 209 (407)
|...++++ |..++..++++-.++....-...+.+ .+..|++..+-+...++..+...++-+++++|++++..++
T Consensus 36 ~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM 115 (349)
T KOG1443|consen 36 KWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTM 115 (349)
T ss_pred hhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeee
Confidence 34444566 88888888887777655544333222 2456666666666666677889999999999999999999
Q ss_pred HhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhccc-
Q 015427 210 IIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKY- 288 (407)
Q Consensus 210 i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~G~l~~l~sa~~~a~~~v~~r~~~~~- 288 (407)
.++..++|+.+++.+|.=||+++.-..-++++.+|+.+.++++.+ ....|..+.+++.++-++...+.+.+.++
T Consensus 116 ~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTq-----f~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~ 190 (349)
T KOG1443|consen 116 TKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQ-----FNIEGFFLVLAASLLSGLRWAFTQMLLRNQ 190 (349)
T ss_pred ccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccc-----eeehhHHHHHHHHHhhhhhHHHHHHHHhcC
Confidence 999999999999988888999999999999999999999987533 33479999999999999998888876654
Q ss_pred ----CChHHHHHHHHHHHHHHHHHHHHHhcCCCcc---cccccCCHHHHHHHHHHHHHHHHHHHHH---HHHHhccCChh
Q 015427 289 ----SDPVMATGWHMVIGGLPLMVISVLNHDPVYG---ESVKELTSSDILALLYTSIFGSAISYGV---YFYSATKGSLT 358 (407)
Q Consensus 289 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ll~~g~~~~~~~~~l---~~~al~~~~~~ 358 (407)
.+|....+...-...+.+++..+.+|++... ..+...+.......+..-..+..+++.+ .+.-+.+.+..
T Consensus 191 ~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~laF~l~~sEflLl~~Ts~l 270 (349)
T KOG1443|consen 191 PSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLLAFLLEFSEFLLLSRTSSL 270 (349)
T ss_pred ccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHheeeeccce
Confidence 3678888888888888888888888886432 1112222222222222222444445533 24457788999
Q ss_pred hHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcc
Q 015427 359 KLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF 403 (407)
Q Consensus 359 ~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~ 403 (407)
+.++....+-+...+++.++.+|.++..+|+|..+.+.|+.+...
T Consensus 271 tlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~ 315 (349)
T KOG1443|consen 271 TLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN 315 (349)
T ss_pred eeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999843
No 25
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=2.7e-12 Score=116.54 Aligned_cols=274 Identities=15% Similarity=0.138 Sum_probs=209.0
Q ss_pred HHHHHhHHHHHHhhccCcC-HHHHHH--HHHHHHHHHHHHHHHHhCCCC-CCChhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 015427 125 FFFWGTAMVAMKEVLPKAG-TFFVAA--FRLIPAGLLLITFASSQGRKL-PSGFNAWVSIFLFALVDASCFQGFLAQGLQ 200 (407)
Q Consensus 125 ~~~~~~~~~~~k~~~~~~~-p~~~~~--~r~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~al~ 200 (407)
++.-..+.+.+|.++...+ |..+.. .+++...+.+...-..+-.+. +.+++..++++...++... ....-..+++
T Consensus 21 ~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~-~i~t~~~slk 99 (314)
T KOG1444|consen 21 CLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVG-MLFTGSKSLK 99 (314)
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHH-HHHHcccccc
Confidence 3333445667798887655 555444 788777776655443333233 4566777777777776433 6667778999
Q ss_pred ccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHHH
Q 015427 201 RTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGTV 280 (407)
Q Consensus 201 ~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~G~l~~l~sa~~~a~~~v 280 (407)
+.++...++++..+|+++++.+.+++|.+++...|.++....+|......++...+ ..|+.+++...+..+.+.+
T Consensus 100 ~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~-----~~gY~w~~~n~~~~a~~~v 174 (314)
T KOG1444|consen 100 YLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFN-----LRGYSWALANCLTTAAFVV 174 (314)
T ss_pred ccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceec-----chhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887664333 2589999999999999999
Q ss_pred HHHhhcc--cCChHHHHHHHHHHHHHHHHHHHHHhcCCC-ccccc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 015427 281 MVRWVSK--YSDPVMATGWHMVIGGLPLMVISVLNHDPV-YGESV-KELTSSDILALLYTSIFGSAISYGVYFYSATKGS 356 (407)
Q Consensus 281 ~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~ll~~g~~~~~~~~~l~~~al~~~~ 356 (407)
..|+..+ +.+.+.+.+|..+.+........++.++.. ...+. ...+...+..+..-++++.++.|.. ....+..+
T Consensus 175 ~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s-~~ct~~~S 253 (314)
T KOG1444|consen 175 YVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGISYTS-FLCTRVNS 253 (314)
T ss_pred HHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHHHHHH-HHHHhhcc
Confidence 9998654 346677899999999999988888777633 10011 1234556777777777777777754 67788889
Q ss_pred hhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccC
Q 015427 357 LTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 405 (407)
Q Consensus 357 ~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~~~ 405 (407)
+.+.++.....-..+.+.+.++++++.++...+|..+-++|.++|++.+
T Consensus 254 AtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~ 302 (314)
T KOG1444|consen 254 ATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYAT 302 (314)
T ss_pred ccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhh
Confidence 9999988866666666777777788899999999999999999998754
No 26
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.54 E-value=1.7e-12 Score=117.72 Aligned_cols=217 Identities=16% Similarity=0.060 Sum_probs=167.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcC
Q 015427 172 SGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAP 251 (407)
Q Consensus 172 ~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~ 251 (407)
..+++.+++.+++++... .+.+.++++++++++..+++..+..+++++++.+++|+|+++.||+++++.++|+.++..+
T Consensus 12 ~~~~~~~~~~vPA~lY~~-qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~ 90 (244)
T PF04142_consen 12 KSPKDTLKLAVPALLYAI-QNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLS 90 (244)
T ss_pred HhHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecC
Confidence 345788889999998755 6679999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCC----C-C-------cchhhhHHHHHHHHHHHHHHHHHHHHhhcccC--ChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015427 252 AFDE----S-N-------SSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYS--DPVMATGWHMVIGGLPLMVISVLNHDPV 317 (407)
Q Consensus 252 ~~~~----~-~-------~~~~~~G~l~~l~sa~~~a~~~v~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (407)
+... + . ......|+++.++++++.++..++.++..|+. +.+..+....+.+.++.++.....+...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~ 170 (244)
T PF04142_consen 91 SSQSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSA 170 (244)
T ss_pred CccccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 6322 0 0 12346899999999999999999999987765 4455555666677776666655544322
Q ss_pred cc--cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 015427 318 YG--ESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVT 394 (407)
Q Consensus 318 ~~--~~~~~~~~~~~~~ll~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~li 394 (407)
.. ..+..++...|..++..++ +=.+....+|+.+...=.....+..+++.+.++++|+.+++....+|+.++
T Consensus 171 ~~~~g~f~G~~~~~~~~i~~~a~-----gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 171 ISESGFFHGYSWWVWIVIFLQAI-----GGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred cccCCchhhcchHHHHHHHHHHH-----hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 11 1122334444443333332 223445667999998889999999999999999999999999999998753
No 27
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.54 E-value=5.9e-11 Score=109.44 Aligned_cols=284 Identities=14% Similarity=0.064 Sum_probs=212.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhccC----cCHHHHHHHHHHHHHHHHHHHHHHhCCC----C--------CCChhhHHH
Q 015427 116 LEWAVLVSPFFFWGTAMVAMKEVLPK----AGTFFVAAFRLIPAGLLLITFASSQGRK----L--------PSGFNAWVS 179 (407)
Q Consensus 116 ~~~l~~~~~~~~~~~~~~~~k~~~~~----~~p~~~~~~r~~~~~l~~~~~~~~~~~~----~--------~~~~~~~~~ 179 (407)
.-++.++...+.++......|..... ..|....+.-=++-.+++...+++..++ . ...+++..+
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 44666777788888888888876542 4577778877777777777776665321 1 123456778
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCCCC-----
Q 015427 180 IFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFD----- 254 (407)
Q Consensus 180 ~~~~g~~~~~~~~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~----- 254 (407)
+.+++++... .+-++|+++.+.+++..++...+-.+.++++..+++++|+++.||.++++.+.|+.++..+..+
T Consensus 95 ~~vPa~iYal-qNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~ 173 (345)
T KOG2234|consen 95 VSVPALIYAL-QNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAK 173 (345)
T ss_pred HHHHHHHHHH-hhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcc
Confidence 8888887655 5669999999999999999999999999999999999999999999999999999999844321
Q ss_pred -CCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcccC--ChHHHHHHHHHHHHHHHHHHHHHhcCCCc--ccccccCCHHH
Q 015427 255 -ESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYS--DPVMATGWHMVIGGLPLMVISVLNHDPVY--GESVKELTSSD 329 (407)
Q Consensus 255 -~~~~~~~~~G~l~~l~sa~~~a~~~v~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 329 (407)
.........|....+.+++.-+...++.+++.|+. +.+..+.-...++.+..+...+..++... ...+..++...
T Consensus 174 ~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~v 253 (345)
T KOG2234|consen 174 SESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIV 253 (345)
T ss_pred CCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHH
Confidence 12233456899999999999999999999987653 44555555556666666666655544322 12234556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccC
Q 015427 330 ILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 405 (407)
Q Consensus 330 ~~~ll~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~~~ 405 (407)
|..++..++-+-.++ ..+++.+-..-.-...+..+++.+.++.+|+-.++....+|+.+++.++.+|...+
T Consensus 254 w~vVl~~a~gGLlvs-----~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P 324 (345)
T KOG2234|consen 254 WLVVLLNAVGGLLVS-----LVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYP 324 (345)
T ss_pred HHHHHHHhccchhHH-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCC
Confidence 776666654433333 33566666666666778889999999999999999999999999999999998543
No 28
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.52 E-value=1.1e-13 Score=112.64 Aligned_cols=123 Identities=24% Similarity=0.383 Sum_probs=108.6
Q ss_pred HHHHhHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 015427 126 FFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRK--LPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTS 203 (407)
Q Consensus 126 ~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~ 203 (407)
++||...++.|...++.||....++|+..+.+ +++.....+++ ...+++++...+..++++...++.++++++++++
T Consensus 1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 79 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYIS 79 (126)
T ss_pred ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcc
Confidence 46899999999999999999999999999997 55555444433 4556678888888888877788999999999999
Q ss_pred hhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhh
Q 015427 204 AGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLE 249 (407)
Q Consensus 204 ~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~ 249 (407)
++.++++.+++|+++.+++++++||++++.+++|++++++|+.++.
T Consensus 80 ~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 80 ASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999875
No 29
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.52 E-value=3.7e-13 Score=115.74 Aligned_cols=254 Identities=11% Similarity=0.026 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhcHHHHHHHHHH
Q 015427 144 TFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAA 223 (407)
Q Consensus 144 p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~ 223 (407)
...++++++.+-.++.-++...+++ .+..+..-+.....++ ...+.++..+.+++++|--...+-+++-|+=+++++.
T Consensus 53 alaLVf~qC~~N~vfAkvl~~ir~~-~~~D~t~~~~YaAcs~-sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGV 130 (337)
T KOG1580|consen 53 ALALVFFQCTANTVFAKVLFLIRKK-TEIDNTPTKMYAACSA-SYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGV 130 (337)
T ss_pred HHHHHHHHHHHHHHHHHhheeeccc-ccccCCcchHHHHHHH-HHHHHHHhccchhcccCCcHHHhcccCCCcceeeeeh
Confidence 3445555555555544333222221 2222222222333333 4455777889999999988888889999999999999
Q ss_pred HHcCCcchHHHHHHHHHHHHHHHHhhcCCC--CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcccC--ChHHHHHHHH
Q 015427 224 LLFGESIGLVGAGGLVLGVIGLLLLEAPAF--DESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYS--DPVMATGWHM 299 (407)
Q Consensus 224 l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~--~~~~~~~~~~G~l~~l~sa~~~a~~~v~~r~~~~~~--~~~~~~~~~~ 299 (407)
++.+++.++.+..+++++++||++..+.+. .+.+......|.++.+++-..-+.....+.++++.. ...+++.+..
T Consensus 131 l~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~N 210 (337)
T KOG1580|consen 131 LFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTN 210 (337)
T ss_pred hhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHH
Confidence 999999999999999999999999999762 222334456899999999988888888887766543 4456788888
Q ss_pred HHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHhhhhhhhHHHHHHHHHHHh
Q 015427 300 VIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYL 379 (407)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~~~pv~a~i~~~~~~ 379 (407)
+.+.+.+..-.++.++-.....+.+..+..|+-+..++ +++.+++++.++-....+|.+-+++..+.-.++++.++++|
T Consensus 211 lwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~a-i~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf 289 (337)
T KOG1580|consen 211 LWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLA-IASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLF 289 (337)
T ss_pred HHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHH-HHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHh
Confidence 88888777666665553211122334555666677676 66888999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 015427 380 GETFSPLQLVGAAVTVVAIYL 400 (407)
Q Consensus 380 ~e~~~~~~~iG~~lil~g~~l 400 (407)
+.+++..||+|.+++..+...
T Consensus 290 ~npls~rQwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 290 NNPLSGRQWLGTVLVFSALTA 310 (337)
T ss_pred cCcCcHHHHHHHHHHHHHhhh
Confidence 999999999999999988764
No 30
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.47 E-value=3.7e-11 Score=108.54 Aligned_cols=245 Identities=16% Similarity=0.107 Sum_probs=177.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHH-hhcHHHHHHHHH
Q 015427 144 TFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVI-IDSQPLSVAVLA 222 (407)
Q Consensus 144 p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~s~a~~i-~~~~p~~~~lla 222 (407)
|.+..+---+-+.++-+......+.....+.+.+...++.|++... ++...+.|+++..++.+.++ ..++-+.+.+.+
T Consensus 12 ~~~Q~lG~t~Gali~alv~~~~~~p~~~~~~~~~~~~~lsG~~W~i-Gq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~g 90 (269)
T PF06800_consen 12 PANQILGTTIGALIFALVVFLFRQPAFSMSGTSFIVAFLSGAFWAI-GQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIG 90 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcceeeeccchhHHHHHHHHHH
Confidence 5555544444444444545554444443334777888888887755 78899999999999999999 678888899999
Q ss_pred HHHcCCcchHHH----HHHHHHHHHHHHHhhcCCCCCCC---cchhhhHHHHHHHHHHHHHHHHHHHHhhcccCChHHHH
Q 015427 223 ALLFGESIGLVG----AGGLVLGVIGLLLLEAPAFDESN---SSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMAT 295 (407)
Q Consensus 223 ~l~l~e~~~~~~----~~~~~l~~~Gv~l~~~~~~~~~~---~~~~~~G~l~~l~sa~~~a~~~v~~r~~~~~~~~~~~~ 295 (407)
.++++|--+..+ .+++++.++|+.+.+..+.+++. ......|.+..+++.++|..|.+..|.. +.+++...
T Consensus 91 v~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~--~~~~~~~~ 168 (269)
T PF06800_consen 91 VLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAF--HVSGWSAF 168 (269)
T ss_pred HhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhc--CCChhHhH
Confidence 999999776555 44899999999999988743332 3355689999999999999999998874 35777766
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHhhhhhhhHHHHHHHH
Q 015427 296 GWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFG 375 (407)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~~~pv~a~i~~ 375 (407)
.-+.+...+-..++..+.+.+.. ....|. -+..| +.-.++..++..+.++.+.+..-.+..+.++++.+.+
T Consensus 169 lPqaiGm~i~a~i~~~~~~~~~~-------~k~~~~-nil~G-~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgG 239 (269)
T PF06800_consen 169 LPQAIGMLIGAFIFNLFSKKPFF-------EKKSWK-NILTG-LIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGG 239 (269)
T ss_pred HHHHHHHHHHHHHHhhccccccc-------ccchHH-hhHHH-HHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhh
Confidence 65555444444444443322211 122222 22233 3456677888999999999999999999999999999
Q ss_pred HHHhCCCCCHHH----HHHHHHHHHHHHH
Q 015427 376 FLYLGETFSPLQ----LVGAAVTVVAIYL 400 (407)
Q Consensus 376 ~~~~~e~~~~~~----~iG~~lil~g~~l 400 (407)
++++||+=+..+ ++|.++++.|.++
T Consensus 240 I~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 240 IFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred heEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 999999987664 6788888888765
No 31
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.47 E-value=5.2e-13 Score=108.73 Aligned_cols=125 Identities=30% Similarity=0.560 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015427 273 QSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSA 352 (407)
Q Consensus 273 ~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~l~~~al 352 (407)
++|+.+.+..|+..++.|+.....+.+..+.+ ..+...+.+... ....+...+...++.+++++++++.++++++
T Consensus 1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 75 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LLILLLILGRKP----FKNLSPRQWLWLLFLGLLGTALAYLLYFYAL 75 (126)
T ss_pred ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhhcccc----ccCCChhhhhhhhHhhccceehHHHHHHHHH
Confidence 36889999999999999999999999999998 666666655432 2456777888889899888899999999999
Q ss_pred ccCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 015427 353 TKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN 402 (407)
Q Consensus 353 ~~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~ 402 (407)
++.+++.++++.+++|+++.+++++++||+++..+++|+++++.|++++.
T Consensus 76 ~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 76 KYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999875
No 32
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.43 E-value=8.3e-11 Score=105.57 Aligned_cols=258 Identities=12% Similarity=0.059 Sum_probs=205.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhcHHHHHHHHH
Q 015427 143 GTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLA 222 (407)
Q Consensus 143 ~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~s~a~~i~~~~p~~~~lla 222 (407)
++..+.+.+-+.+.++-..++..++.+ ....+.+++....++.+.. +-.|.|.|++|++--.-.+-+++--+-+++++
T Consensus 50 ~~~fL~~~q~l~~~~~s~~~l~~~k~~-~~~~apl~~y~~is~tn~~-s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg 127 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSYAMLKWWKKE-LSGVAPLYKYSLISFTNTL-SSWCGYEALKYVSYPTQTLAKSCKMIPVMLMG 127 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhccccc-CCCCCchhHHhHHHHHhhc-chHHHHHHHHhccchHHHHHHHhhhhHHHHHH
Confidence 478888999999988887666555554 3344677777777776655 55699999999998888888999999999999
Q ss_pred HHHcCCcchHHHHHHHHHHHHHHHHhhcCCCCC----CCcchhhhHHHHHHHHHHHHHHHHHHHHhhcc--cCChHHHHH
Q 015427 223 ALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDE----SNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSK--YSDPVMATG 296 (407)
Q Consensus 223 ~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~----~~~~~~~~G~l~~l~sa~~~a~~~v~~r~~~~--~~~~~~~~~ 296 (407)
.++.|.|++..+.+...++-+|+.+....+.++ ........|+.+....-+.-++.+..+.++-+ +.+.+++++
T Consensus 128 ~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~ 207 (327)
T KOG1581|consen 128 TLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMF 207 (327)
T ss_pred HHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHH
Confidence 999999999999999999999999887654221 11123457998888888888888888887655 457899999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHhhhhhhhHHHHHHHHH
Q 015427 297 WHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGF 376 (407)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~~~pv~a~i~~~ 376 (407)
+..+.+++......+..+...-.-.+....+..+.-++.+. +|.++++.+.++-+++.++.+.+.++.+.-+++++++.
T Consensus 208 ~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s-~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~ 286 (327)
T KOG1581|consen 208 GVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYS-TCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSC 286 (327)
T ss_pred HHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHH-HhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHH
Confidence 99999999988874433332211233445677777777776 55777888889999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHHHHhcc
Q 015427 377 LYLGETFSPLQLVGAAVTVVAIYLVNF 403 (407)
Q Consensus 377 ~~~~e~~~~~~~iG~~lil~g~~l~~~ 403 (407)
+.||.+++..|++|..++..|+.+-.+
T Consensus 287 i~f~h~~s~~q~~g~~iVFg~i~l~~~ 313 (327)
T KOG1581|consen 287 IVFGHPLSSEQWLGVLIVFGGIFLEIL 313 (327)
T ss_pred HHhCCccchhhccCeeeehHHHHHHHH
Confidence 999999999999999999999887443
No 33
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.36 E-value=1.1e-10 Score=103.20 Aligned_cols=273 Identities=18% Similarity=0.153 Sum_probs=188.2
Q ss_pred HhHHHHHHhhcc----Cc----CHHHHHHHHHHHHHHHHHHHHHHhCCCCC--------------CChhhHHHHHHHHHH
Q 015427 129 GTAMVAMKEVLP----KA----GTFFVAAFRLIPAGLLLITFASSQGRKLP--------------SGFNAWVSIFLFALV 186 (407)
Q Consensus 129 ~~~~~~~k~~~~----~~----~p~~~~~~r~~~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~g~~ 186 (407)
+.+.+..|++.+ +. +|+.....-++.-.+++..+.+.+.+... .++-.....+..+.+
T Consensus 16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~ 95 (372)
T KOG3912|consen 16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALC 95 (372)
T ss_pred cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHH
Confidence 445666687653 12 26666655555555666666555433211 011112223346666
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCCC-----CCCCcchh
Q 015427 187 DASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAF-----DESNSSLW 261 (407)
Q Consensus 187 ~~~~~~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~-----~~~~~~~~ 261 (407)
..+ +..+.|.++.+++++.-+++.....+|+.+++.-+++.+++..+|+|+....+|++++-..+. .-.+.+..
T Consensus 96 Di~-gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~i 174 (372)
T KOG3912|consen 96 DIA-GSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSSI 174 (372)
T ss_pred HHh-hhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccccc
Confidence 655 556889999999999999999999999999999999999999999999999999999876641 11223445
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcc--cCChHHHHHHHHHHHHHHHHHHHHHhcC---C-CcccccccCCHHHHHH---
Q 015427 262 GSGEWWMLLAAQSMAVGTVMVRWVSK--YSDPVMATGWHMVIGGLPLMVISVLNHD---P-VYGESVKELTSSDILA--- 332 (407)
Q Consensus 262 ~~G~l~~l~sa~~~a~~~v~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~--- 332 (407)
..|+++.+++-+.-|+.+++.+|..+ +.+|.....+..+++.++...++..... + .+..+ ......+|..
T Consensus 175 itGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~-~~g~~eD~~~~~~ 253 (372)
T KOG3912|consen 175 ITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCN-PRGVLEDWGDAFA 253 (372)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCC-CCcchhhHHHHHH
Confidence 68999999999999999999888655 4689999999999997666555443211 1 11100 0111222221
Q ss_pred ------HHHHHHHHHHHHHHHHHH----HhccCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 015427 333 ------LLYTSIFGSAISYGVYFY----SATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN 402 (407)
Q Consensus 333 ------ll~~g~~~~~~~~~l~~~----al~~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~ 402 (407)
.++....+..+.-.+++. .-+..++++-.++..+...+--++++....|.+...|+.|.++.+.|+++|+
T Consensus 254 ~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~ 333 (372)
T KOG3912|consen 254 ALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYN 333 (372)
T ss_pred HhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222222222222222 2456788999999999999999999999999999999999999999999987
Q ss_pred c
Q 015427 403 F 403 (407)
Q Consensus 403 ~ 403 (407)
.
T Consensus 334 ~ 334 (372)
T KOG3912|consen 334 Q 334 (372)
T ss_pred H
Confidence 4
No 34
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.35 E-value=4.4e-11 Score=110.44 Aligned_cols=132 Identities=19% Similarity=0.254 Sum_probs=115.1
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhhccCcCH--HHHHHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHH
Q 015427 114 MLLEWAVLVSPFFFWGTAMVAMKEVLPKAGT--FFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCF 191 (407)
Q Consensus 114 ~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~p--~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 191 (407)
..+|.++.++++++|+...+..|...++.++ .....+++.++.++++++....++....+.+++...+..+.++...+
T Consensus 126 ~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (260)
T TIGR00950 126 NPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALA 205 (260)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999998877774 45555789999999988877765544445567777888888888889
Q ss_pred HHHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Q 015427 192 QGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGL 245 (407)
Q Consensus 192 ~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv 245 (407)
+.++++++++.+++.++.+.+++|+++++++++++||+++..+++|..+.+.|+
T Consensus 206 ~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 206 YFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999986
No 35
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=3.3e-12 Score=112.46 Aligned_cols=269 Identities=14% Similarity=0.095 Sum_probs=204.3
Q ss_pred HHHHhhccC----cC-HHHHHHHHHHHHHHHHHHHHHHhCC--------CCCCChhhHHHHHHHHHHHHHHHHHHHHHHh
Q 015427 133 VAMKEVLPK----AG-TFFVAAFRLIPAGLLLITFASSQGR--------KLPSGFNAWVSIFLFALVDASCFQGFLAQGL 199 (407)
Q Consensus 133 ~~~k~~~~~----~~-p~~~~~~r~~~~~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al 199 (407)
+.+|.++.. +| |...+..++++...+++.+-....+ +.+.+.+..+..+-..++. .+...+-++++
T Consensus 45 f~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVf-i~mI~fnnlcL 123 (347)
T KOG1442|consen 45 FLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVF-ILMISFNNLCL 123 (347)
T ss_pred hhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhhee-eeehhccceeh
Confidence 344666653 44 8999999999988877766543322 1122333444444444443 22445668899
Q ss_pred hccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHH
Q 015427 200 QRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGT 279 (407)
Q Consensus 200 ~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~G~l~~l~sa~~~a~~~ 279 (407)
+++++++..+=..+..+|++++..+++|+|-+..-..+..+++.|-.+=...+.. .......|.++++++.++-|+..
T Consensus 124 ~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~--~~~ls~~GvifGVlaSl~vAlna 201 (347)
T KOG1442|consen 124 KYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGS--TGTLSWIGVIFGVLASLAVALNA 201 (347)
T ss_pred hhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccc--cCccchhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988775544322 23334589999999999999999
Q ss_pred HHHHhhcccC--ChHHHHHHHHHHHHHHHHHHHHHhcCCCccccc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 015427 280 VMVRWVSKYS--DPVMATGWHMVIGGLPLMVISVLNHDPVYGESV-KELTSSDILALLYTSIFGSAISYGVYFYSATKGS 356 (407)
Q Consensus 280 v~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~g~~~~~~~~~l~~~al~~~~ 356 (407)
+..|+..... ..+.+..|..+.+.++..|...+.++-..-... ..++...|..+..-|+++..++|.- ..=+|-.+
T Consensus 202 iytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvT-g~QIK~TS 280 (347)
T KOG1442|consen 202 IYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVT-GWQIKVTS 280 (347)
T ss_pred HhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhhee-eEEEEecc
Confidence 9999865443 357789999999999999998887664321111 2346777887777777776666643 33467789
Q ss_pred hhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccC
Q 015427 357 LTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 405 (407)
Q Consensus 357 ~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~~~ 405 (407)
|.++.+-...+-....+++..+++|.-+...|-|-.+++.|...|.+.|
T Consensus 281 plThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk 329 (347)
T KOG1442|consen 281 PLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVK 329 (347)
T ss_pred cceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHH
Confidence 9999999999999999999999999999999999999999999998765
No 36
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.28 E-value=4.6e-11 Score=95.55 Aligned_cols=105 Identities=22% Similarity=0.291 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCC----CChhhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhcHHHHHHHHHHH
Q 015427 149 AFRLIPAGLLLITFASSQGRKLP----SGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAAL 224 (407)
Q Consensus 149 ~~r~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l 224 (407)
.+|+.++.+++..+...+++..+ .+++.+.+.+..|.++...++.++++|+++.+ +.++++.+++|+++.+++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 57999999988888777554321 22355566677777777678899999999999 58889999999999999999
Q ss_pred HcCCcchHHHHHHHHHHHHHHHHhhcCCCC
Q 015427 225 LFGESIGLVGAGGLVLGVIGLLLLEAPAFD 254 (407)
Q Consensus 225 ~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~ 254 (407)
++|||+++.++++++++++|++++..++.+
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999999999987744
No 37
>PRK13499 rhamnose-proton symporter; Provisional
Probab=99.28 E-value=2e-08 Score=94.56 Aligned_cols=286 Identities=14% Similarity=0.067 Sum_probs=180.8
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhhccCcCHHHHHHH-HHHHHHHHHHHHH-HHhCCC-----CCCChhhHHHHHHHHHH
Q 015427 114 MLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAF-RLIPAGLLLITFA-SSQGRK-----LPSGFNAWVSIFLFALV 186 (407)
Q Consensus 114 ~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~-r~~~~~l~~~~~~-~~~~~~-----~~~~~~~~~~~~~~g~~ 186 (407)
...|++..+++.++||+.++..|+ .+.-+ ++.... -.+++.++..... ....+. ...+.+.+...++.|++
T Consensus 5 ~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~-wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~~ 82 (345)
T PRK13499 5 IILGIIWHLIGGASSGSFYAPFKK-VKKWS-WETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGAL 82 (345)
T ss_pred hHHHHHHHHHHHHHhhcccccccc-cCCCc-hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHHH
Confidence 467899999999999999999998 45443 222211 1112222222111 010010 12345677778888887
Q ss_pred HHHHHHHHHHHHhhccchhhHHHH-hhcHHHHHHHHHHHHcCCcc-------hHHHHHHHHHHHHHHHHhhc----CCCC
Q 015427 187 DASCFQGFLAQGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESI-------GLVGAGGLVLGVIGLLLLEA----PAFD 254 (407)
Q Consensus 187 ~~~~~~~~~~~al~~~~~s~a~~i-~~~~p~~~~lla~l~l~e~~-------~~~~~~~~~l~~~Gv~l~~~----~~~~ 254 (407)
... ++..++.++++..++.+..+ ..++-++..++..++++|=. ...-.+|++++++|+++... .+.+
T Consensus 83 W~i-G~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~~~ 161 (345)
T PRK13499 83 WGI-GGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKERK 161 (345)
T ss_pred HHh-hhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 755 77899999999999999987 88999999999999998633 24578899999999999998 4422
Q ss_pred C----CCcchhhhHHHHHHHHHHHHHHHHH-------HHHhh-cccCChHHHHHHHHH---HHHH-HHHHHHHH---hcC
Q 015427 255 E----SNSSLWGSGEWWMLLAAQSMAVGTV-------MVRWV-SKYSDPVMATGWHMV---IGGL-PLMVISVL---NHD 315 (407)
Q Consensus 255 ~----~~~~~~~~G~l~~l~sa~~~a~~~v-------~~r~~-~~~~~~~~~~~~~~~---~~~~-~~~~~~~~---~~~ 315 (407)
. ++.....+|..+++++.+.++.|+. ..+.. ....++.....-+.. .+.+ ..+++..+ ..+
T Consensus 162 ~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~ 241 (345)
T PRK13499 162 MGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNK 241 (345)
T ss_pred cccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 1 2234567999999999999999994 33321 112333322222222 3333 22233332 211
Q ss_pred CC-cccccccCC----HHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHh----hhhhhhHHHHHHHHHHHhCCCCC--
Q 015427 316 PV-YGESVKELT----SSDILALLYTSIFGSAISYGVYFYSATKGSLTKLS----SLTFLTPMFASIFGFLYLGETFS-- 384 (407)
Q Consensus 316 ~~-~~~~~~~~~----~~~~~~ll~~g~~~~~~~~~l~~~al~~~~~~~~s----~~~~~~pv~a~i~~~~~~~e~~~-- 384 (407)
+. ...+ ...+ ..... +..++.+.=.+++.+|..+-++.+..... ..+.+..+++.++|++ +||.=+
T Consensus 242 ~~~~~~~-~~~~~~~~~~n~l-~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi~-lkE~K~a~ 318 (345)
T PRK13499 242 DLSLKAD-FSLAKPLLITNVL-LSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGLV-LKEWKGAS 318 (345)
T ss_pred Ccccchh-ccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhhh-hhhccCCC
Confidence 10 0001 1111 12222 22233344566777778877777544333 3447888999999995 999877
Q ss_pred ----HHHHHHHHHHHHHHHHhcccC
Q 015427 385 ----PLQLVGAAVTVVAIYLVNFRG 405 (407)
Q Consensus 385 ----~~~~iG~~lil~g~~l~~~~~ 405 (407)
...++|.+++++|.+++...+
T Consensus 319 ~k~~~~l~~G~vliI~g~~lig~~~ 343 (345)
T PRK13499 319 RRPVRVLSLGCVVIILAANIVGLGN 343 (345)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhcc
Confidence 667999999999999987654
No 38
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.27 E-value=1.7e-10 Score=97.58 Aligned_cols=139 Identities=18% Similarity=0.289 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc-------cCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccC-------CHHH
Q 015427 264 GEWWMLLAAQSMAVGTVMVRWVSK-------YSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKEL-------TSSD 329 (407)
Q Consensus 264 G~l~~l~sa~~~a~~~v~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 329 (407)
|.++++.+.++.++++++.|+..+ +.++.++..+....+.+++.+..++.|++......... +...
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 678999999999999999988544 45899999999999999999999998887532222111 2344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcc
Q 015427 330 ILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF 403 (407)
Q Consensus 330 ~~~ll~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~ 403 (407)
+..++..|++ ....+...+..+++.+|.+.++.+.++.+..++.++++|||+++..+++|.++.+.|.++|++
T Consensus 81 ~~~~~~~~~~-~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLL-AFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 5555555544 344455668899999999999999999999999999999999999999999999999999875
No 39
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.26 E-value=4e-10 Score=105.94 Aligned_cols=137 Identities=14% Similarity=0.108 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 015427 115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGF 194 (407)
Q Consensus 115 ~~~~l~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 194 (407)
..|.++.++++++|+...+..|...++.++.... +-..++.+++.++..........+...+...+..++++..+++.+
T Consensus 147 ~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l 225 (293)
T PRK10532 147 LTGAALALGAGACWAIYILSGQRAGAEHGPATVA-IGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSL 225 (293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHH-HHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999887778877765 445666666777666544322334445555678888888889999
Q ss_pred HHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCC
Q 015427 195 LAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (407)
Q Consensus 195 ~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~ 252 (407)
+++++++.+++.++++.+++|++..+++++++||+++..+++|..++++|++......
T Consensus 226 ~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 226 EMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999987655
No 40
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=99.22 E-value=5e-10 Score=104.62 Aligned_cols=268 Identities=13% Similarity=0.074 Sum_probs=159.9
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHH
Q 015427 113 GMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQ 192 (407)
Q Consensus 113 ~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 192 (407)
+...|.++.+.++++.+....+.|....+.+... .| .............++.|.+...++.
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~---~~----------------~~~~~~~~l~~~~W~~G~~~~~~g~ 64 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGS---LR----------------AGSGGRSYLRRPLWWIGLLLMVLGE 64 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---cc----------------ccchhhHHHhhHHHHHHHHHHhcch
Confidence 4567889999999999999999988654332100 00 0000000111123344444445567
Q ss_pred HHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCCCCCCCc-chh-------hhH
Q 015427 193 GFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNS-SLW-------GSG 264 (407)
Q Consensus 193 ~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~-~~~-------~~G 264 (407)
.+.+.|+.+.|.+..+++..+.-++.++++..++|||+++.++.|+.+++.|..++..-+.++++. +.. ..+
T Consensus 65 ~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~~~~ 144 (300)
T PF05653_consen 65 ILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLSQPG 144 (300)
T ss_pred HHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhcCcc
Confidence 788999999999999999999999999999999999999999999999999998876533222111 100 011
Q ss_pred HHH--HHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHH-------HHHHHHHHhcCCCcccccccCCHHHHHHHHH
Q 015427 265 EWW--MLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGL-------PLMVISVLNHDPVYGESVKELTSSDILALLY 335 (407)
Q Consensus 265 ~l~--~l~sa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 335 (407)
.+. .+...+...+.....++..++ +.........+++.. +.........+.. .-..+..|..++.
T Consensus 145 fl~y~~~~~~~~~~L~~~~~~r~g~~-~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~-----~f~~~~~y~l~~~ 218 (300)
T PF05653_consen 145 FLVYFILVLVLILILIFFIKPRYGRR-NILVYISICSLIGSFTVLSAKAISILIKLTFSGDN-----QFTYPLTYLLLLV 218 (300)
T ss_pred eehhHHHHHHHHHHHHHhhcchhccc-ceEEEEEEeccccchhhhHHHHHHHHHHHHhcCch-----hhhhhHHHHHHHH
Confidence 111 111112222222222232221 111111111111110 1111111111111 1123445544443
Q ss_pred HHHHHHHHHHHHHHHHhccCChhhHhhhhh-hhHHHHHHHHHHHhCCC--CCH----HHHHHHHHHHHHHHHhcccCC
Q 015427 336 TSIFGSAISYGVYFYSATKGSLTKLSSLTF-LTPMFASIFGFLYLGET--FSP----LQLVGAAVTVVAIYLVNFRGS 406 (407)
Q Consensus 336 ~g~~~~~~~~~l~~~al~~~~~~~~s~~~~-~~pv~a~i~~~~~~~e~--~~~----~~~iG~~lil~g~~l~~~~~~ 406 (407)
. +.+...+....++|+++.++..+.++.+ .-...+++-+.++|+|. .+. ....|..+++.|+++++..|+
T Consensus 219 ~-v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~ 295 (300)
T PF05653_consen 219 L-VVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKD 295 (300)
T ss_pred H-HHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCc
Confidence 3 5667778888899999999998888877 56677788888899976 444 346788999999999987664
No 41
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.19 E-value=2.1e-10 Score=96.35 Aligned_cols=208 Identities=12% Similarity=0.038 Sum_probs=154.3
Q ss_pred HHHHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhHHHHHHH
Q 015427 191 FQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLL 270 (407)
Q Consensus 191 ~~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~G~l~~l~ 270 (407)
.+..|..++.+.++++++.+..+.-.|+.+++++.+|+|+...++++.++++.|++++.+.+. ......+|+.++..
T Consensus 66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN---~~a~e~iGi~~AV~ 142 (290)
T KOG4314|consen 66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN---EHADEIIGIACAVG 142 (290)
T ss_pred CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc---hhhhhhhhHHHHHH
Confidence 445899999999999999999999999999999999999999999999999999999997551 22234589999999
Q ss_pred HHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHH----HHHH-HHHHhcCCCcccccccCCHHHHHHHHHHHHHHHHHHH
Q 015427 271 AAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGL----PLMV-ISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISY 345 (407)
Q Consensus 271 sa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~ 345 (407)
++..-|+|.+..|+.....+-.....+.+..+.. ..++ ..+.+.+.. .+.......|..+...+.+..+..
T Consensus 143 SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE---~~qsFA~~PWG~l~G~A~L~lAFN- 218 (290)
T KOG4314|consen 143 SAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGVE---HLQSFAAAPWGCLCGAAGLSLAFN- 218 (290)
T ss_pred HHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhchH---HHHHHhhCCchhhhhHHHHHHHHh-
Confidence 9999999999999977655433333333322221 1111 112222211 122233445666665555543333
Q ss_pred HHHHHHhccCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccC
Q 015427 346 GVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 405 (407)
Q Consensus 346 ~l~~~al~~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~~~ 405 (407)
.+.+.++....|...++............++++-+-..+...+.|..+|+.|.+++..++
T Consensus 219 ~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~ 278 (290)
T KOG4314|consen 219 FLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPE 278 (290)
T ss_pred hheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheeccc
Confidence 455778888999999999999999999999986666688899999999999998877654
No 42
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.19 E-value=1.1e-09 Score=93.94 Aligned_cols=270 Identities=15% Similarity=0.156 Sum_probs=197.4
Q ss_pred HHHHHHhhccCcC---HHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhccchhhH
Q 015427 131 AMVAMKEVLPKAG---TFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSAGLG 207 (407)
Q Consensus 131 ~~~~~k~~~~~~~---p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~s~a 207 (407)
+.+..|.+....+ -+.+++.+.+...+-+...-..+-.+.+. ++..+++...++... ....--.+++|+++...
T Consensus 21 mTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR~--t~aK~WfpiSfLLv~-MIyt~SKsLqyL~vpiY 97 (309)
T COG5070 21 MTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFRL--TKAKKWFPISFLLVV-MIYTSSKSLQYLAVPIY 97 (309)
T ss_pred HHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhheeh--hhhhhhcCHHHHHHH-HHHhcccceeeeeeeHH
Confidence 3455577766433 56666777666555444433332222222 222233333333222 22344679999999999
Q ss_pred HHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCCCCCC--CcchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 015427 208 SVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDES--NSSLWGSGEWWMLLAAQSMAVGTVMVRWV 285 (407)
Q Consensus 208 ~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~--~~~~~~~G~l~~l~sa~~~a~~~v~~r~~ 285 (407)
++.++++.+.++....+++|.|++-.+....++.+..-+...+.+.... .....+.|+++...-.+..+.+-...|+-
T Consensus 98 TiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~~NclssaafVL~mrkr 177 (309)
T COG5070 98 TIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFTNCLSSAAFVLIMRKR 177 (309)
T ss_pred HHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEehhhHhHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988888877663111 11245679999999999999998888764
Q ss_pred cc--cCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHhhh
Q 015427 286 SK--YSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSL 363 (407)
Q Consensus 286 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~l~~~al~~~~~~~~s~~ 363 (407)
.+ +..-....+|..+++..++..+.++++++...+-....+.....++...|+...++.| +-.+.++-.+.++.+++
T Consensus 178 i~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy-~saWcvrVtSSTtySMv 256 (309)
T COG5070 178 IKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISY-CSAWCVRVTSSTTYSMV 256 (309)
T ss_pred hcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhh-ccceeEeehhhhHHHHH
Confidence 43 2334567899999999999999988887654322344556666777878877777776 44778899999999999
Q ss_pred hhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccc
Q 015427 364 TFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFR 404 (407)
Q Consensus 364 ~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~~ 404 (407)
..++-.-..+.|.++|+|+.+...+....+-..+..+|...
T Consensus 257 GALNKlp~alaGlvffdap~nf~si~sillGflsg~iYava 297 (309)
T COG5070 257 GALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVA 297 (309)
T ss_pred HHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988877777777654
No 43
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.13 E-value=2.5e-09 Score=100.53 Aligned_cols=136 Identities=14% Similarity=0.146 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCChhhHHHHHHHHHHHHHHHH
Q 015427 115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKL--PSGFNAWVSIFLFALVDASCFQ 192 (407)
Q Consensus 115 ~~~~l~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~ 192 (407)
..|.++.++++++|+...+..|...+. ++...+.+++.++.+.+.++........ ..+...+..++..++++..+.+
T Consensus 149 ~~G~l~~l~a~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~ 227 (292)
T PRK11272 149 PWGAILILIASASWAFGSVWSSRLPLP-VGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAI 227 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999886543 3455677888888888877766544322 2344677788888888888899
Q ss_pred HHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcC
Q 015427 193 GFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAP 251 (407)
Q Consensus 193 ~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~ 251 (407)
.++++++++.+++.++.+.+++|++.++++++++||+++..+++|.++++.|+.++...
T Consensus 228 ~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~ 286 (292)
T PRK11272 228 SAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG 286 (292)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998754
No 44
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.13 E-value=2.4e-09 Score=100.05 Aligned_cols=133 Identities=17% Similarity=0.216 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHHHHHHHHH
Q 015427 265 EWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAIS 344 (407)
Q Consensus 265 ~l~~l~sa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~ 344 (407)
.++.++++++++..+++.|+..++.++. ..+......++..++........ .+...+. .++..+..+.++....
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~ 76 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEPDF--LWWALLAHSVLLTPYGLWYLAQV---GWSRLPA-TFWLLLAISAVANMVY 76 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhHH--HHHHHHHHHHHHHHHHHHhcccC---CCCCcch-hhHHHHHHHHHHHHHH
Confidence 5688999999999999999887775553 35555566666666655431111 1222233 3333444555667778
Q ss_pred HHHHHHHhccCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcc
Q 015427 345 YGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF 403 (407)
Q Consensus 345 ~~l~~~al~~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~ 403 (407)
+.++++++++.+++.++++.+++|+++.+++++++||+++..+++|.++++.|++++..
T Consensus 77 ~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 77 FLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 88999999999999999999999999999999999999999999999999999988764
No 45
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.13 E-value=1.9e-09 Score=101.48 Aligned_cols=140 Identities=14% Similarity=0.209 Sum_probs=112.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHHHH
Q 015427 260 LWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIF 339 (407)
Q Consensus 260 ~~~~G~l~~l~sa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~ 339 (407)
...+|+++.+++++.|+...+..|.. .+.++.+..+++.+++.++..+......+...... ...+...+. ....+.+
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~ 81 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKT-LIQTPQKIF-MLAVSAV 81 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH-HHcCHHHHH-HHHHHHH
Confidence 34589999999999999999999876 67899999999999998877766554432110000 001233333 3335667
Q ss_pred HHHHHHHHHHHHhccCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 015427 340 GSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN 402 (407)
Q Consensus 340 ~~~~~~~l~~~al~~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~ 402 (407)
+.+..+.++++++++.+++.++++.++.|++..+++.+++||+++..+++|.++.++|++++.
T Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 778889999999999999999999999999999999999999999999999999999998865
No 46
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.10 E-value=2.8e-09 Score=98.20 Aligned_cols=139 Identities=17% Similarity=0.192 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHhcCCCc-ccccccCCHHH-HHHHHHHHHHH
Q 015427 263 SGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVY-GESVKELTSSD-ILALLYTSIFG 340 (407)
Q Consensus 263 ~G~l~~l~sa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~ll~~g~~~ 340 (407)
+|..+.+++++.|+...+..|.. .+.++.++.+++++++.+++.++.....+... .......+... +..+...| +.
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-KPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCG-LL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHH-HH
Confidence 48899999999999999999984 56999999999999998887766654432110 00011112222 33334444 34
Q ss_pred HHHHHHHHHHHhccCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcc
Q 015427 341 SAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF 403 (407)
Q Consensus 341 ~~~~~~l~~~al~~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~ 403 (407)
....+.+++.++++.+++.++.+.++.|+++++++.+++||+++..+++|.++.++|++++..
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~ 142 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV 142 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 667788999999999999999999999999999999999999999999999999999987643
No 47
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.07 E-value=5.4e-09 Score=98.40 Aligned_cols=133 Identities=17% Similarity=0.110 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCChhhHHHHHHHHHHHHHHHHH
Q 015427 115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGR-KLPSGFNAWVSIFLFALVDASCFQG 193 (407)
Q Consensus 115 ~~~~l~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~ 193 (407)
..|.++.++++++|+...+..|...++.++..... ..+.+.+.+.....+. ....+...+..++..++ ...+++.
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~-~t~~~~~ 230 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFF---ILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAA-AMGFGYA 230 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHH---HHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHH-HHHHHHH
Confidence 45889999999999999999998777777765432 2233333332222322 12344456666666554 5677889
Q ss_pred HHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcC
Q 015427 194 FLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAP 251 (407)
Q Consensus 194 ~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~ 251 (407)
++++++++.+++.++.+.+++|++..+++++++||+++..+++|.++++.|+.+....
T Consensus 231 l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~ 288 (295)
T PRK11689 231 AWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLA 288 (295)
T ss_pred HHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999887654
No 48
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.06 E-value=6.3e-09 Score=99.91 Aligned_cols=137 Identities=13% Similarity=0.142 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhccCcCH-HHHHHHHHHHHHHHHHHHHHHhCCC-CC---CCh-hhHHHHHHHHHHHH
Q 015427 115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAGT-FFVAAFRLIPAGLLLITFASSQGRK-LP---SGF-NAWVSIFLFALVDA 188 (407)
Q Consensus 115 ~~~~l~~~~~~~~~~~~~~~~k~~~~~~~p-~~~~~~r~~~~~l~~~~~~~~~~~~-~~---~~~-~~~~~~~~~g~~~~ 188 (407)
..|.+++++++++|++..++.|...++.++ ...+++...++.+.+.+......+. .. ... ......+..+++ .
T Consensus 188 ~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~-t 266 (358)
T PLN00411 188 LIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAII-T 266 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHH-H
Confidence 458889999999999999999887777654 4666777777766665544443221 11 111 112223333443 4
Q ss_pred HHHHHHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCC
Q 015427 189 SCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (407)
Q Consensus 189 ~~~~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~ 252 (407)
.+.+.++++++++.+++.+++..+++|++++++++++++|+++..+++|.++++.|+.++..+.
T Consensus 267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~ 330 (358)
T PLN00411 267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGK 330 (358)
T ss_pred HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhh
Confidence 5578899999999999999999999999999999999999999999999999999999998654
No 49
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.98 E-value=3.4e-08 Score=93.17 Aligned_cols=138 Identities=15% Similarity=0.146 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhccCcC---HHHHHHHHHHHHHHHHHHHHHHhCCC-------CCCChhhHHHHHHHH
Q 015427 115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAG---TFFVAAFRLIPAGLLLITFASSQGRK-------LPSGFNAWVSIFLFA 184 (407)
Q Consensus 115 ~~~~l~~~~~~~~~~~~~~~~k~~~~~~~---p~~~~~~r~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~g 184 (407)
..|.++.++++++|+...+..|...++.+ .....++...++.+.+.......+.. ...+...+..++..+
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 221 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence 46889999999999999999988655433 23334444444444333332222211 133456788888899
Q ss_pred HHHHHHHHHHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCC
Q 015427 185 LVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (407)
Q Consensus 185 ~~~~~~~~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~ 252 (407)
++...+.+.++++++++.++..++.+..++|++..+++++++||+++..+++|.+++++|+.+...+.
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999887654
No 50
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=98.91 E-value=2.9e-10 Score=98.98 Aligned_cols=273 Identities=17% Similarity=0.137 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 015427 117 EWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLA 196 (407)
Q Consensus 117 ~~l~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 196 (407)
.+++.++-++.||....+..+. +-+|.+.+.---+-+.++.+..++. .....+.+.+...++.|++... ++...+
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~--GG~p~qQ~lGtT~GALifaiiv~~~--~~p~~T~~~~iv~~isG~~Ws~-GQ~~Qf 77 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKF--GGKPYQQTLGTTLGALIFAIIVFLF--VSPELTLTIFIVGFISGAFWSF-GQANQF 77 (288)
T ss_pred hHHHHHHHHHHhcccceeeeec--CCChhHhhhhccHHHHHHHHHHhee--ecCccchhhHHHHHHhhhHhhh-hhhhhh
Confidence 4677889999999988776432 3446666555444444444444443 2233455777777888887765 778999
Q ss_pred HHhhccchhhHHHH-hhcHHHHHHHHHHHHcCCcchHHH----HHHHHHHHHHHHHhhcCCC---CCCCcchhhhHHHHH
Q 015427 197 QGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVG----AGGLVLGVIGLLLLEAPAF---DESNSSLWGSGEWWM 268 (407)
Q Consensus 197 ~al~~~~~s~a~~i-~~~~p~~~~lla~l~l~e~~~~~~----~~~~~l~~~Gv~l~~~~~~---~~~~~~~~~~G~l~~ 268 (407)
.|+++..++.+.++ +.+.-+-+.+++.+.++|-.+..+ .+++++.+.|+.+....+. ++++.+...+|....
T Consensus 78 ka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~kkgi~~L 157 (288)
T COG4975 78 KAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNLKKGIVIL 157 (288)
T ss_pred hheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHhhhhheeee
Confidence 99999999999988 778888899999999999777665 5688899999999888762 333444566899999
Q ss_pred HHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHH
Q 015427 269 LLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVY 348 (407)
Q Consensus 269 l~sa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~l~ 348 (407)
+.+.++|..|-++.+... .+.+....-+. ++.++.....-..... .. ..+..+.-+.-|++ -+.+...+
T Consensus 158 ~iSt~GYv~yvvl~~~f~--v~g~saiLPqA-iGMv~~ali~~~~~~~------~~-~~K~t~~nii~G~~-Wa~GNl~m 226 (288)
T COG4975 158 LISTLGYVGYVVLFQLFD--VDGLSAILPQA-IGMVIGALILGFFKME------KR-FNKYTWLNIIPGLI-WAIGNLFM 226 (288)
T ss_pred eeeccceeeeEeeecccc--ccchhhhhHHH-HHHHHHHHHHhhcccc------cc-hHHHHHHHHhhHHH-HHhhHHHH
Confidence 999999999999888764 33333333222 2222222222222211 11 22222233334433 45567788
Q ss_pred HHHhccCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHH----HHHHHHHHHHHHHhcccC
Q 015427 349 FYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQ----LVGAAVTVVAIYLVNFRG 405 (407)
Q Consensus 349 ~~al~~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~----~iG~~lil~g~~l~~~~~ 405 (407)
..+-++.+.++.=.+..+..+++.+-|+++++|+=+..+ ++|.++++.|..++...|
T Consensus 227 l~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~~K 287 (288)
T COG4975 227 LLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGIAK 287 (288)
T ss_pred HHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhheec
Confidence 888888888888888899999999999999999999877 678899999988877655
No 51
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.91 E-value=5.1e-08 Score=79.17 Aligned_cols=122 Identities=17% Similarity=0.257 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHHHHHHH
Q 015427 263 SGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSA 342 (407)
Q Consensus 263 ~G~l~~l~sa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~ 342 (407)
.|+++.+++.++.+..+++.|+-.++.+....... . . ...... .++ ...++.|+++.+
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~-~----~-~~~~~~-------------~~p---~~~i~lgl~~~~ 59 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWD-F----I-AALLAF-------------GLA---LRAVLLGLAGYA 59 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhH-H----H-HHHHHH-------------hcc---HHHHHHHHHHHH
Confidence 47889999999999999999998766543221111 0 0 000000 011 114567888999
Q ss_pred HHHHHHHHHhccCChhhHhhhhhhhHHHHHHHHHH--HhCCCCCHHHHHHHHHHHHHHHHhcccCC
Q 015427 343 ISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFL--YLGETFSPLQLVGAAVTVVAIYLVNFRGS 406 (407)
Q Consensus 343 ~~~~l~~~al~~~~~~~~s~~~~~~pv~a~i~~~~--~~~e~~~~~~~iG~~lil~g~~l~~~~~~ 406 (407)
+++.+|.+++++.+++++.++....++...+.++. +|||++++.+++|.++|++|++++++.++
T Consensus 60 la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 60 LSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999998888888874 89999999999999999999999987654
No 52
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.84 E-value=2.7e-07 Score=81.70 Aligned_cols=272 Identities=12% Similarity=0.046 Sum_probs=183.6
Q ss_pred HhHHHHHHhhcc--CcC--HHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 015427 129 GTAMVAMKEVLP--KAG--TFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRTSA 204 (407)
Q Consensus 129 ~~~~~~~k~~~~--~~~--p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~ 204 (407)
=.+.....++.+ ++. -|.+++.++++-..+.+..+...+.+. ....|+.....+++... .+++..-++.|++-
T Consensus 56 l~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~~~k~--r~iP~rtY~~la~~t~g-tmGLsn~SlgYLNY 132 (367)
T KOG1582|consen 56 LVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLIQTKR--RVIPWRTYVILAFLTVG-TMGLSNGSLGYLNY 132 (367)
T ss_pred HHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEeecccc--eecchhHhhhhHhhhhh-ccccCcCccccccC
Confidence 334444444444 344 467788887776655554432222111 11334444555554433 56677788888876
Q ss_pred hhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHh
Q 015427 205 GLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGTVMVRW 284 (407)
Q Consensus 205 s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~G~l~~l~sa~~~a~~~v~~r~ 284 (407)
-.-.+.+.+--+=+.+.+.++-|.|.+..+.++..+...|.++.+..+...+ ......|+.+.-.+-++-|+---++++
T Consensus 133 PtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~s-PNF~~~Gv~mIsgALl~DA~iGNvQEk 211 (367)
T KOG1582|consen 133 PTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTS-PNFNLIGVMMISGALLADAVIGNVQEK 211 (367)
T ss_pred cHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccC-CCcceeeHHHHHHHHHHHHHhhHHHHH
Confidence 6556667877777888888899999999999999999999999998773332 233447888777777777766666666
Q ss_pred hccc--CChHHHHHHHHHHHHHHHHHHHHHhcCCCc-ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHh
Q 015427 285 VSKY--SDPVMATGWHMVIGGLPLMVISVLNHDPVY-GESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLS 361 (407)
Q Consensus 285 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~g~~~~~~~~~l~~~al~~~~~~~~s 361 (407)
.++. .+..++.+|...++.+..+..+...++-.. +..-.+.+.......+..+ +.+.++......-++..++.+++
T Consensus 212 ~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s-~~gylG~~~VLalI~~fGA~~aa 290 (367)
T KOG1582|consen 212 AMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFS-LAGYLGIVFVLALIKLFGALIAA 290 (367)
T ss_pred HHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHH-HHhHhhHHHHHHHHHHhchhHHH
Confidence 5543 345667788888888888777777665321 1111122333344444333 22344444545567778999999
Q ss_pred hhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccC
Q 015427 362 SLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 405 (407)
Q Consensus 362 ~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~~~ 405 (407)
.+....--+++++++++|..+++....-|..+++.|+++-.+.|
T Consensus 291 tvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 291 TVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 99999999999999999999999999999999999999876655
No 53
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.82 E-value=6.6e-08 Score=91.33 Aligned_cols=138 Identities=17% Similarity=0.054 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhcc--CcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--h---------hhHHH-H
Q 015427 115 LLEWAVLVSPFFFWGTAMVAMKEVLP--KAGTFFVAAFRLIPAGLLLITFASSQGRKLPSG--F---------NAWVS-I 180 (407)
Q Consensus 115 ~~~~l~~~~~~~~~~~~~~~~k~~~~--~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~--~---------~~~~~-~ 180 (407)
..|.++.++++++|+...+..|...+ +.++...+.+.+..+.++++|+....+...... . ..... .
T Consensus 144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (302)
T TIGR00817 144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS 223 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence 56889999999999999999998777 789999999999999999998876543211000 0 01111 2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCC
Q 015427 181 FLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (407)
Q Consensus 181 ~~~g~~~~~~~~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~ 252 (407)
+..+.......+.+++++++++++..+++...+.|+++.+++++++||+++..+++|..+++.|+.+.....
T Consensus 224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k 295 (302)
T TIGR00817 224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVK 295 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence 222222222233566789999999999999999999999999999999999999999999999999987643
No 54
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.81 E-value=2.7e-08 Score=89.65 Aligned_cols=193 Identities=12% Similarity=0.001 Sum_probs=122.0
Q ss_pred hhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCCC-----------------CCC-----Ccchh
Q 015427 204 AGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAF-----------------DES-----NSSLW 261 (407)
Q Consensus 204 ~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~-----------------~~~-----~~~~~ 261 (407)
+......++..++++++..+.+.+||++..+++++.+...|+......+. ++. .....
T Consensus 4 vPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g~~ 83 (222)
T TIGR00803 4 VPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFGNP 83 (222)
T ss_pred ccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccccH
Confidence 33445667778888888888888888888888888888888764322210 010 11233
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccCChH--HHHHHHHHHHHHHHHHHHHHhcCCCcc-cc-cccCCHHHHHHHHHHH
Q 015427 262 GSGEWWMLLAAQSMAVGTVMVRWVSKYSDPV--MATGWHMVIGGLPLMVISVLNHDPVYG-ES-VKELTSSDILALLYTS 337 (407)
Q Consensus 262 ~~G~l~~l~sa~~~a~~~v~~r~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~ll~~g 337 (407)
..|....+.+..+-+...++.++..|+.+.. .-.....+.+.+.........+..... .. ....+...|..
T Consensus 84 ~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 158 (222)
T TIGR00803 84 VVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIV----- 158 (222)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHH-----
Confidence 4677777777777778888888876654321 111111122222212111111111100 00 11122222221
Q ss_pred HHHHHHHHHHHHHHhccCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Q 015427 338 IFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLV 401 (407)
Q Consensus 338 ~~~~~~~~~l~~~al~~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~ 401 (407)
+++.+++..+....+++.++...+....++++++.++++++|||+++..+++|+.+++.|+++|
T Consensus 159 ~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 159 GLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 2334556667788899999999999999999999999999999999999999999999998764
No 55
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.78 E-value=2.4e-07 Score=73.43 Aligned_cols=69 Identities=17% Similarity=0.148 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhc
Q 015427 182 LFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEA 250 (407)
Q Consensus 182 ~~g~~~~~~~~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~ 250 (407)
..++++...++.++..++++.|++.+..+.++.++++.+++++++|||++..+++|+.++++|++++..
T Consensus 41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 334456666888999999999999999998899999999999999999999999999999999998864
No 56
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=6.3e-08 Score=88.13 Aligned_cols=268 Identities=13% Similarity=0.099 Sum_probs=169.1
Q ss_pred hchhhHHHHHHHHHHHHHHHhHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHH
Q 015427 110 MELGMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDAS 189 (407)
Q Consensus 110 ~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 189 (407)
+..+...|.++.+.+.++.|....+.|....+... ...|. .+...+.. ++ +.+..|.+...
T Consensus 15 ~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~---~~~ra-------------~~gg~~yl-~~--~~Ww~G~ltm~ 75 (335)
T KOG2922|consen 15 MSSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA---SGLRA-------------GEGGYGYL-KE--PLWWAGMLTMI 75 (335)
T ss_pred hccCceeeeeehhhccEEEeeehhhhHHHHHHHhh---hcccc-------------cCCCcchh-hh--HHHHHHHHHHH
Confidence 34445678888899999999999999886554332 11111 11111111 22 44556666777
Q ss_pred HHHHHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCCCCCCCcc-h-------h
Q 015427 190 CFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSS-L-------W 261 (407)
Q Consensus 190 ~~~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~-~-------~ 261 (407)
++..+-|.|+.+.|.+..+++-++..++.++++..+++||++....+|.++|++|-.++......+.+.. . .
T Consensus 76 vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~~~~~ 155 (335)
T KOG2922|consen 76 VGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVWELAT 155 (335)
T ss_pred HHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHHHHhc
Confidence 7888889999999999999999999999999999999999999999999999999888776442222111 1 0
Q ss_pred hhHHHHHH-HHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHH----------HHHHHHhcCCCcccccccCCHHHH
Q 015427 262 GSGEWWML-LAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPL----------MVISVLNHDPVYGESVKELTSSDI 330 (407)
Q Consensus 262 ~~G~l~~l-~sa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 330 (407)
..+++.-. +-.+...+-....| ++.....+..|..+.+.+-. ..+-....+.. ....+..|
T Consensus 156 ~~~Fliy~~~iil~~~il~~~~~---p~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~-----ql~~~~ty 227 (335)
T KOG2922|consen 156 EPGFLVYVIIIILIVLILIFFYA---PRYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNN-----QLFYPLTW 227 (335)
T ss_pred CccHHHHHHHHHHHHHHHheeec---ccccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCc-----ccccHHHH
Confidence 12222111 11111111112222 22222223334444333311 11111222221 12234455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCChhhHhhhhh-hhHHHHHHHHHHHhCCC--CCHH----HHHHHHHHHHHHHHhcc
Q 015427 331 LALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTF-LTPMFASIFGFLYLGET--FSPL----QLVGAAVTVVAIYLVNF 403 (407)
Q Consensus 331 ~~ll~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~-~~pv~a~i~~~~~~~e~--~~~~----~~iG~~lil~g~~l~~~ 403 (407)
..++.+ +.|...+....++|++..+++.++++.| +-..+++.-+.++|+|. .+.. .+.|...++.|++++..
T Consensus 228 ~~~l~~-~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~ 306 (335)
T KOG2922|consen 228 IFLLVV-ATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHR 306 (335)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeee
Confidence 555544 3556667667799999999999999888 67788889999999986 3333 47889999999999876
Q ss_pred cC
Q 015427 404 RG 405 (407)
Q Consensus 404 ~~ 405 (407)
.|
T Consensus 307 ~k 308 (335)
T KOG2922|consen 307 TK 308 (335)
T ss_pred ec
Confidence 55
No 57
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.73 E-value=8e-07 Score=83.03 Aligned_cols=136 Identities=24% Similarity=0.306 Sum_probs=108.8
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhhccCcCHHHHHH-HHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHH
Q 015427 114 MLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAA-FRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQ 192 (407)
Q Consensus 114 ~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~-~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 192 (407)
...|.++.+.+++.|+...+..|... +.++..... +.+....+...+....... .+...+.+......+++....++
T Consensus 152 ~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~i~~ 229 (292)
T COG0697 152 SLLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFG-APILSRAWLLLLYLGVFSTGLAY 229 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhcccc-ccCCHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999998766 666666665 4444233333333222222 34555778888888888877789
Q ss_pred HHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcC
Q 015427 193 GFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAP 251 (407)
Q Consensus 193 ~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~ 251 (407)
.++++++++.+++.++++..+.|++..++++++++|+++..+++|..+++.|+.+....
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 230 LLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999998754
No 58
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.73 E-value=5.7e-07 Score=71.25 Aligned_cols=68 Identities=10% Similarity=0.128 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHhccCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcc
Q 015427 336 TSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF 403 (407)
Q Consensus 336 ~g~~~~~~~~~l~~~al~~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~ 403 (407)
.++++.++++.++..++++.|.+++.++.++.++++.++++++|||+++..+++|.+++++|++++..
T Consensus 42 ~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 42 LALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34466778899999999999999999999999999999999999999999999999999999998765
No 59
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.72 E-value=1.3e-07 Score=75.48 Aligned_cols=106 Identities=17% Similarity=0.433 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHhhhhhhhHHHHHHHHH
Q 015427 297 WHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGF 376 (407)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~~~pv~a~i~~~ 376 (407)
+....+.+....+....++... .........+.+.+..|+++...++.+++.++++.+ +.++++..+.|+++.+++.
T Consensus 3 ~r~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~ 79 (113)
T PF13536_consen 3 FRYLFSVLFLLIILLIRGRLRD--LFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSW 79 (113)
T ss_pred HHHHHHHHHHHHHHHHHccHHH--HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555433210 011122244555666677777788999999999999 5888999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHHHHhcccC
Q 015427 377 LYLGETFSPLQLVGAAVTVVAIYLVNFRG 405 (407)
Q Consensus 377 ~~~~e~~~~~~~iG~~lil~g~~l~~~~~ 405 (407)
+++||+++..+++|.+++++|++++...+
T Consensus 80 ~~~~er~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 80 LFFKERLSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999988654
No 60
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=98.68 E-value=1.9e-07 Score=82.92 Aligned_cols=251 Identities=13% Similarity=0.083 Sum_probs=161.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-CCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhcc-chhhHHHHhhcHHHHHHHH
Q 015427 144 TFFVAAFRLIPAGLLLITFASSQGR-KLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRT-SAGLGSVIIDSQPLSVAVL 221 (407)
Q Consensus 144 p~~~~~~r~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~-~~s~a~~i~~~~p~~~~ll 221 (407)
-..+++.++++-+.--+++.-.... +.+.+.+++ ..... ..++.+.+-++++++- +.-.=.++.+-.++.++++
T Consensus 33 gNLITFaqFlFia~eGlif~skf~~~k~kiplk~Y---~i~V~-mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~ 108 (330)
T KOG1583|consen 33 GNLITFAQFLFIATEGLIFTSKFFTVKPKIPLKDY---AITVA-MFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMIL 108 (330)
T ss_pred eeehHHHHHHHHHHhceeeeccccccCCCCchhhh---heehh-eeeeeeeeccceeeecccceEEEEEecCcHHHHHHH
Confidence 4567888888887766665411111 111122222 22222 2333556778898884 4443345588899999999
Q ss_pred HHHHcCCcchHHHHHHHHHHHHHHHHhhcCCC---CC-----------CCcchhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 015427 222 AALLFGESIGLVGAGGLVLGVIGLLLLEAPAF---DE-----------SNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSK 287 (407)
Q Consensus 222 a~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~---~~-----------~~~~~~~~G~l~~l~sa~~~a~~~v~~r~~~~ 287 (407)
+++++|+|.+..|+.++++.-+|+++.+.... .. .+...+..|+.+...+-+..|.-.++++..-+
T Consensus 109 g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~ 188 (330)
T KOG1583|consen 109 GWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQ 188 (330)
T ss_pred HHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998876431 11 11223567887777777777777666655333
Q ss_pred --cCChHHHHHHHHHHHHHHHHHHH--------HHhcCC-CcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH----h
Q 015427 288 --YSDPVMATGWHMVIGGLPLMVIS--------VLNHDP-VYGESVKELTSSDILALLYTSIFGSAISYGVYFYS----A 352 (407)
Q Consensus 288 --~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~l~~~a----l 352 (407)
..++-+.++|..+++....+... .....+ ..-+.....-+..|.+++. ....+|.| .++ -
T Consensus 189 kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~----n~L~Qy~C-ikgVy~L~ 263 (330)
T KOG1583|consen 189 KYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLF----NVLTQYFC-IKGVYILT 263 (330)
T ss_pred HhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHH----HHHHHHHH-HHhhhhhh
Confidence 24677888888887665444321 001111 0000011112334443332 23335544 333 3
Q ss_pred ccCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcc
Q 015427 353 TKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF 403 (407)
Q Consensus 353 ~~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~ 403 (407)
.+.++.+++++..+.-.++.+++++.|+.++++.-|+|++++..|.+++..
T Consensus 264 te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~ 314 (330)
T KOG1583|consen 264 TETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFAN 314 (330)
T ss_pred ceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 355778899999999999999999999999999999999999999998763
No 61
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.66 E-value=7.2e-07 Score=78.45 Aligned_cols=138 Identities=12% Similarity=0.041 Sum_probs=120.5
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHH
Q 015427 113 GMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQ 192 (407)
Q Consensus 113 ~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 192 (407)
-+..|..+.+.+..+|..+.+..|.+.+..+-..-+..-+.++.++.+|+-.......-..+.-....+..+++...+-|
T Consensus 145 lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPY 224 (292)
T COG5006 145 LDPVGVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPY 224 (292)
T ss_pred CCHHHHHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccch
Confidence 34678899999999999999999988767776777889999999999999887665555566667777888889999999
Q ss_pred HHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhc
Q 015427 193 GFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEA 250 (407)
Q Consensus 193 ~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~ 250 (407)
.+-..++++.|...-.++.+++|.+.++.++++++|+++..||+++..++.+.+=.+.
T Consensus 225 sLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~l 282 (292)
T COG5006 225 SLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTL 282 (292)
T ss_pred HHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999999999999888764443
No 62
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.61 E-value=2e-06 Score=82.76 Aligned_cols=135 Identities=13% Similarity=0.085 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhccC-------cCHHHHHHHHHHHHHHHHHHHHHHhCCCC-C---------CCh---
Q 015427 115 LLEWAVLVSPFFFWGTAMVAMKEVLPK-------AGTFFVAAFRLIPAGLLLITFASSQGRKL-P---------SGF--- 174 (407)
Q Consensus 115 ~~~~l~~~~~~~~~~~~~~~~k~~~~~-------~~p~~~~~~r~~~~~l~~~~~~~~~~~~~-~---------~~~--- 174 (407)
..|.++.++++++|+...+..|...++ .++.....+...++.++++|+....+... . ...
T Consensus 193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~ 272 (350)
T PTZ00343 193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK 272 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence 568999999999999999999887753 55776777778888888888776432210 0 000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhh
Q 015427 175 NAWVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLE 249 (407)
Q Consensus 175 ~~~~~~~~~g~~~~~~~~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~ 249 (407)
......++...+.....+.+.+++++++++..+++...+.|+++.+++++++||+++..+++|.+++++|+.+-.
T Consensus 273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence 111122223333333334444579999999999999999999999999999999999999999999999998864
No 63
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.61 E-value=1.3e-06 Score=70.92 Aligned_cols=121 Identities=17% Similarity=0.113 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 015427 116 LEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFL 195 (407)
Q Consensus 116 ~~~l~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 195 (407)
.++++.+++.++-+...++.|...++.+........ ...+. .. ......+..|+++..+++.++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~--~~~~~----~~----------~~p~~~i~lgl~~~~la~~~w 65 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWDF--IAALL----AF----------GLALRAVLLGLAGYALSMLCW 65 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhHH--HHHHH----HH----------hccHHHHHHHHHHHHHHHHHH
Confidence 367788888888888899999887766533322111 00000 00 111124667777778889999
Q ss_pred HHHhhccchhhHHHHhhcHHHHHHHHHHH--HcCCcchHHHHHHHHHHHHHHHHhhcCC
Q 015427 196 AQGLQRTSAGLGSVIIDSQPLSVAVLAAL--LFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (407)
Q Consensus 196 ~~al~~~~~s~a~~i~~~~p~~~~lla~l--~l~e~~~~~~~~~~~l~~~Gv~l~~~~~ 252 (407)
.+++++.+++.+..+.+..+.++.+.++. ++||+++..+++|+.++++|+.++..++
T Consensus 66 ~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 66 LKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999889888885 8999999999999999999999998654
No 64
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.59 E-value=9.3e-07 Score=82.85 Aligned_cols=129 Identities=14% Similarity=0.007 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhccCcCHHHHHHHHHH----HHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHH
Q 015427 115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLI----PAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASC 190 (407)
Q Consensus 115 ~~~~l~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~r~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (407)
.+|+++.+++.+.|+.+....|.. +.+|...++.... .+.++..++ . +. .+...+..+..++.|++ ..+
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~--~-~~-~~~~~~~~~~~~~~Gi~-~~i 223 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAF--GVDGLSVLLPQAIGMVIGGIIFNLGH--I-LA-KPLKKYAILLNILPGLM-WGI 223 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc--CCCcceehhHHHHHHHHHHHHHHHHH--h-cc-cchHHHHHHHHHHHHHH-HHH
Confidence 569999999999999999999975 4788887555554 333333333 1 11 22233455556668887 477
Q ss_pred HHHHHHHHhh-ccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHH----HHHHHHHHHHHHhhc
Q 015427 191 FQGFLAQGLQ-RTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGA----GGLVLGVIGLLLLEA 250 (407)
Q Consensus 191 ~~~~~~~al~-~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~----~~~~l~~~Gv~l~~~ 250 (407)
++.+++.+.+ +.+++.+.++...+|+...+++.+++||+.++.++ +|.++.+.|+.++..
T Consensus 224 a~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 224 GNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 8889999999 99999999999999999999999999999999999 999999999998753
No 65
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.57 E-value=1.5e-06 Score=78.49 Aligned_cols=139 Identities=14% Similarity=0.205 Sum_probs=114.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHHHHHH
Q 015427 262 GSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGS 341 (407)
Q Consensus 262 ~~G~l~~l~sa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~ 341 (407)
..|+++++.+-+.|+.-..+.|.+ +..++.++..+..+.+...+........+.....+ ...++..+......++. .
T Consensus 6 ~~Gil~~l~Ay~lwG~lp~y~kll-~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~-~~~~p~~~~~~~l~a~l-i 82 (293)
T COG2962 6 RKGILLALLAYLLWGLLPLYFKLL-EPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQ-LLKQPKTLLMLALTALL-I 82 (293)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHhCcHHHHHHHHHHHH-H
Confidence 369999999999999999999877 66789999999999998888877766655432111 12345566655555544 5
Q ss_pred HHHHHHHHHHhccCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcc
Q 015427 342 AISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF 403 (407)
Q Consensus 342 ~~~~~l~~~al~~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~ 403 (407)
..++..|.+|....+...+|...+++|++.+++|.+++||+++..|++..++..+|+.....
T Consensus 83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~ 144 (293)
T COG2962 83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTW 144 (293)
T ss_pred HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 66889999999999999999999999999999999999999999999999999999987654
No 66
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.49 E-value=7.4e-06 Score=69.01 Aligned_cols=130 Identities=20% Similarity=0.201 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhccC-------cCHHHHHHHHHHHHHHHHHHHHHHhCCCCC--------C-----Chhh
Q 015427 117 EWAVLVSPFFFWGTAMVAMKEVLPK-------AGTFFVAAFRLIPAGLLLITFASSQGRKLP--------S-----GFNA 176 (407)
Q Consensus 117 ~~l~~~~~~~~~~~~~~~~k~~~~~-------~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~--------~-----~~~~ 176 (407)
|.++.+.+.++.+...+..|...++ .++.++.......+.+++++.+...+.... . ..+.
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 4577889999999999999876543 679999999999999999998776654330 0 1233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHH
Q 015427 177 WVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLL 247 (407)
Q Consensus 177 ~~~~~~~g~~~~~~~~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l 247 (407)
+..++..|++.. ..+.+.+..++++++...+++...-.+++.++++++++|+++..+++|++++++|+.+
T Consensus 81 ~~~~~~~~~~~~-~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 81 IFLLILSGLLAF-LYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 444555555554 4667889999999999999999999999999999999999999999999999999875
No 67
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=98.10 E-value=0.0089 Score=55.87 Aligned_cols=287 Identities=13% Similarity=0.093 Sum_probs=178.2
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCC------CCChhhHHHHHHHHHHH
Q 015427 114 MLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKL------PSGFNAWVSIFLFALVD 187 (407)
Q Consensus 114 ~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~ 187 (407)
-..|+++-.+..++-++.++-.|.. ++.+-...=.+..+++.++.-.....-..+. ..+.....+..+.|++.
T Consensus 5 ii~Gii~h~iGg~~~~sfy~P~kkv-k~WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~lW 83 (344)
T PF06379_consen 5 IILGIIFHAIGGFASGSFYVPFKKV-KGWSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGVLW 83 (344)
T ss_pred HHHHHHHHHHHHHHhhhhccchhhc-CCccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHHHH
Confidence 4678888889999999888888874 5555333344445555554433332222111 22335677778889888
Q ss_pred HHHHHHHHHHHhhccchhhHHHH-hhcHHHHHHHHHHHHcC-------CcchHHHHHHHHHHHHHHHHhhcCCC------
Q 015427 188 ASCFQGFLAQGLQRTSAGLGSVI-IDSQPLSVAVLAALLFG-------ESIGLVGAGGLVLGVIGLLLLEAPAF------ 253 (407)
Q Consensus 188 ~~~~~~~~~~al~~~~~s~a~~i-~~~~p~~~~lla~l~l~-------e~~~~~~~~~~~l~~~Gv~l~~~~~~------ 253 (407)
..+ ...|=.+++|+.++...-| ..+.-++-.++-.++.+ ++-.....+|++++++|+++....+.
T Consensus 84 GIG-gltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~~ 162 (344)
T PF06379_consen 84 GIG-GLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKEL 162 (344)
T ss_pred hcc-hhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhhh
Confidence 664 4588899999999988844 66666666666555543 23345789999999999999977541
Q ss_pred -CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhc--------ccCChHH----HHHHHHHHHHHHHHHHHHHhcC--CCc
Q 015427 254 -DESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVS--------KYSDPVM----ATGWHMVIGGLPLMVISVLNHD--PVY 318 (407)
Q Consensus 254 -~~~~~~~~~~G~l~~l~sa~~~a~~~v~~r~~~--------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~ 318 (407)
++.+.....+|.++++++++.-+..++-...-. ...++.. .....+.-+.+..+.++++... ...
T Consensus 163 ~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~~yc~~~l~~~k~~ 242 (344)
T PF06379_consen 163 GEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITNLIYCLILLAKNKNW 242 (344)
T ss_pred ccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHHHHHHHHHHhhcCCC
Confidence 111223456999999999999999988654321 1112221 2233444556666677665422 111
Q ss_pred --ccccc--cC-CHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----hhhHhhhhhhhHHHHHHHHHHHhCCC------C
Q 015427 319 --GESVK--EL-TSSDILALLYTSIFGSAISYGVYFYSATKGS----LTKLSSLTFLTPMFASIFGFLYLGET------F 383 (407)
Q Consensus 319 --~~~~~--~~-~~~~~~~ll~~g~~~~~~~~~l~~~al~~~~----~~~~s~~~~~~pv~a~i~~~~~~~e~------~ 383 (407)
..+.. .. -.......+..|++ =..++.+|-++-.+.+ ..--.+.+.+..+++-++|++ ++|. .
T Consensus 243 s~~~d~~~~~~~~~~N~~~~aLaG~l-Wy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl~-lkEWKg~s~kt 320 (344)
T PF06379_consen 243 SWKGDYSVAKPPLLKNYLFCALAGVL-WYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGLI-LKEWKGASKKT 320 (344)
T ss_pred ccccccccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHH-HHHhccCCccc
Confidence 01111 11 12233333333332 3446666666655554 455667788889999999997 5653 3
Q ss_pred CHHHHHHHHHHHHHHHHhccc
Q 015427 384 SPLQLVGAAVTVVAIYLVNFR 404 (407)
Q Consensus 384 ~~~~~iG~~lil~g~~l~~~~ 404 (407)
-..-++|.++++.++.++-+.
T Consensus 321 ~~vl~~G~~vlI~s~~ivG~G 341 (344)
T PF06379_consen 321 IRVLVLGIAVLILSVVIVGYG 341 (344)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 345588999999998887654
No 68
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.09 E-value=7.2e-05 Score=68.08 Aligned_cols=129 Identities=15% Similarity=-0.023 Sum_probs=96.0
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHH
Q 015427 113 GMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQ 192 (407)
Q Consensus 113 ~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 192 (407)
+..++++.++++.+.|..+..+.|. .+++++...+-+.+-..+....+.... +.+...+..++-++.|++... ++
T Consensus 135 ~~~kgi~~Ll~stigy~~Y~~~~~~--~~~~~~~~~lPqaiGm~i~a~i~~~~~--~~~~~~k~~~~nil~G~~w~i-gn 209 (269)
T PF06800_consen 135 NMKKGILALLISTIGYWIYSVIPKA--FHVSGWSAFLPQAIGMLIGAFIFNLFS--KKPFFEKKSWKNILTGLIWGI-GN 209 (269)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHh--cCCChhHhHHHHHHHHHHHHHHHhhcc--cccccccchHHhhHHHHHHHH-HH
Confidence 4467889999999999999999887 457887777665554444444444433 223333556667788887655 66
Q ss_pred HHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHH----HHHHHHHHHH
Q 015427 193 GFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAG----GLVLGVIGLL 246 (407)
Q Consensus 193 ~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~----~~~l~~~Gv~ 246 (407)
.+++.|.+....+.+..+..+.++.+.+.+.+++||+-+++++. |+++.+.|.+
T Consensus 210 l~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 210 LFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred HHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 79999999999999999999999999999999999998888764 4444444443
No 69
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.06 E-value=0.00013 Score=68.98 Aligned_cols=140 Identities=10% Similarity=0.026 Sum_probs=107.9
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCC----CCChhhHHHHHHHHHHH
Q 015427 112 LGMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKL----PSGFNAWVSIFLFALVD 187 (407)
Q Consensus 112 ~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~ 187 (407)
.+..+|-++++.+++++|..++..+...++.|+.+...+--+++.++..+....-++.. ..+.+....++.. .++
T Consensus 164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~-~~~ 242 (334)
T PF06027_consen 164 SNPILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGY-ALC 242 (334)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHH-HHH
Confidence 35688999999999999999999999889999888888777788887776665433221 2232333322222 334
Q ss_pred HHHHHHHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCC
Q 015427 188 ASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (407)
Q Consensus 188 ~~~~~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~ 252 (407)
.+..+.+.-..++..++....+=.-++.++..+.+.+++|+++++..++|.+++++|.++....+
T Consensus 243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~ 307 (334)
T PF06027_consen 243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE 307 (334)
T ss_pred HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence 45566666777888888877777788899999999999999999999999999999999987654
No 70
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.97 E-value=0.00032 Score=55.24 Aligned_cols=68 Identities=21% Similarity=0.273 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHhhccchhhHHHH-hhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCC
Q 015427 185 LVDASCFQGFLAQGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (407)
Q Consensus 185 ~~~~~~~~~~~~~al~~~~~s~a~~i-~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~ 252 (407)
+.+..+++.++..++++.|.+.+..+ ....-+.+.+++++++||+++..+++|+.++++|++++...+
T Consensus 37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44445577788999999999999988 668999999999999999999999999999999999997543
No 71
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.95 E-value=8e-05 Score=58.62 Aligned_cols=68 Identities=9% Similarity=0.171 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHhccCChhhHhhh-hhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccC
Q 015427 338 IFGSAISYGVYFYSATKGSLTKLSSL-TFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 405 (407)
Q Consensus 338 ~~~~~~~~~l~~~al~~~~~~~~s~~-~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~~~ 405 (407)
+++.++++.++.+++++.|.+.+-.+ ..+..+.+.+.++++|||++++.+++|.++|+.|+++++..+
T Consensus 37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 45566778888999999999877666 558899999999999999999999999999999999998744
No 72
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.90 E-value=9.8e-05 Score=58.89 Aligned_cols=68 Identities=21% Similarity=0.311 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHhccCChhhHhhh-hhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccC
Q 015427 338 IFGSAISYGVYFYSATKGSLTKLSSL-TFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 405 (407)
Q Consensus 338 ~~~~~~~~~l~~~al~~~~~~~~s~~-~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~~~ 405 (407)
+++.++++.++.+++++.+.+.+-.+ ..+..+.+.+.++++|||+++..+++|.++|++|++.++...
T Consensus 37 i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 37 LVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 45567788899999999999887766 468999999999999999999999999999999999987643
No 73
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=97.79 E-value=6.6e-05 Score=58.88 Aligned_cols=109 Identities=17% Similarity=0.028 Sum_probs=77.3
Q ss_pred HHHHHHHhHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015427 123 SPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRT 202 (407)
Q Consensus 123 ~~~~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~ 202 (407)
+..++||+.+++.|...++.++..-.. |..-.... . ...+ ++.+.=+++.. +.+.|++.+.+.
T Consensus 3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~~-~~~~~~~~----L----------l~n~-~y~ipf~lNq~-GSv~f~~~L~~~ 65 (113)
T PF10639_consen 3 LVGILWGCTNPFIKRGSSGLEKVKASL-QLLQEIKF----L----------LLNP-KYIIPFLLNQS-GSVLFFLLLGSA 65 (113)
T ss_pred eehHHhcCchHHHHHHHhhcCCccchH-HHHHHHHH----H----------HHhH-HHHHHHHHHHH-HHHHHHHHHhcC
Confidence 457899999999998877655333221 32211111 0 0112 22333333444 556889999999
Q ss_pred chhhHHHH-hhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHh
Q 015427 203 SAGLGSVI-IDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLL 248 (407)
Q Consensus 203 ~~s~a~~i-~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~ 248 (407)
+.+.+.++ +++.=+++++.++++.+|..++..++|+.++++|+.+.
T Consensus 66 dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 66 DLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred CceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 99999988 68999999999988888888889999999999998764
No 74
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.78 E-value=0.00075 Score=55.62 Aligned_cols=129 Identities=15% Similarity=0.073 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHhHHHHHHhhccCcC-HHHHHHHHHHHHHHHHHHHHHHhCCCC-CCChhhHHHHHHHHHHHHHHHHHHH
Q 015427 118 WAVLVSPFFFWGTAMVAMKEVLPKAG-TFFVAAFRLIPAGLLLITFASSQGRKL-PSGFNAWVSIFLFALVDASCFQGFL 195 (407)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~k~~~~~~~-p~~~~~~r~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~ 195 (407)
.++.+.+..+-+....++-.+.+..+ |+..+++.+..+.+.+..+....+++. ...++..++.++-|.++.. ...+.
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~-~V~~~ 81 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVF-FVLSN 81 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHH-HHHHH
Confidence 44566777777888888876677776 999999999999999988887776642 2222334455556666544 66688
Q ss_pred HHHhhccchhhHHHH-hhcHHHHHHHHHHH----HcCCcchHHHHHHHHHHHHHHHH
Q 015427 196 AQGLQRTSAGLGSVI-IDSQPLSVAVLAAL----LFGESIGLVGAGGLVLGVIGLLL 247 (407)
Q Consensus 196 ~~al~~~~~s~a~~i-~~~~p~~~~lla~l----~l~e~~~~~~~~~~~l~~~Gv~l 247 (407)
.+...+.+++.+..+ ..-+-+...+++.+ .-+++++..+.+|+++.++|+.+
T Consensus 82 ~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 82 IILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 899999999999966 55567777777765 35789999999999999999864
No 75
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.76 E-value=0.0002 Score=55.14 Aligned_cols=66 Identities=27% Similarity=0.335 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHH-hhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcC
Q 015427 186 VDASCFQGFLAQGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAP 251 (407)
Q Consensus 186 ~~~~~~~~~~~~al~~~~~s~a~~i-~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~ 251 (407)
++...++.++-.+++++|++.+..+ .....+.+++.+++++||+++..+++++.+.++|++.+...
T Consensus 38 v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 38 VGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 3445577788999999999999977 88999999999999999999999999999999999988653
No 76
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.73 E-value=0.00037 Score=55.65 Aligned_cols=69 Identities=26% Similarity=0.372 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHH-hhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCC
Q 015427 184 ALVDASCFQGFLAQGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (407)
Q Consensus 184 g~~~~~~~~~~~~~al~~~~~s~a~~i-~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~ 252 (407)
.+.+...++.++..++++.|.+.+..+ ....-+.+++++.+++||+++..+++|+.++++|++++...+
T Consensus 36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 344455577799999999999999988 579999999999999999999999999999999999987644
No 77
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.73 E-value=0.00032 Score=54.09 Aligned_cols=68 Identities=18% Similarity=0.256 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHhccCChhhH-hhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccCC
Q 015427 339 FGSAISYGVYFYSATKGSLTKL-SSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS 406 (407)
Q Consensus 339 ~~~~~~~~l~~~al~~~~~~~~-s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~~~~ 406 (407)
++..++|.+..+++|+.|.+++ ++-.-...+.+.+.++++|||++++.+++|.+++++|++.++...+
T Consensus 38 v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s~ 106 (106)
T COG2076 38 VGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGSR 106 (106)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcCC
Confidence 4456678889999999998755 5556688899999999999999999999999999999999887653
No 78
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.73 E-value=0.00031 Score=54.74 Aligned_cols=68 Identities=21% Similarity=0.260 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHhccCChhhH-hhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccC
Q 015427 338 IFGSAISYGVYFYSATKGSLTKL-SSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 405 (407)
Q Consensus 338 ~~~~~~~~~l~~~al~~~~~~~~-s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~~~ 405 (407)
+++.+++|.+..+++|+.|.+.+ ++-..+..+.+.+.++++|||++++.+++|..+++.|++.++..+
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~~ 104 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLST 104 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhccC
Confidence 35566778888999999998765 444558899999999999999999999999999999999987654
No 79
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.72 E-value=0.0013 Score=51.63 Aligned_cols=65 Identities=6% Similarity=0.099 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHhccCChhhHh-hhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcc
Q 015427 339 FGSAISYGVYFYSATKGSLTKLS-SLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF 403 (407)
Q Consensus 339 ~~~~~~~~l~~~al~~~~~~~~s-~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~ 403 (407)
++.+++|.+..+++|+.|.+.+= +-..+..+.+.+.++++|||++++.+++|.++|+.|++.++.
T Consensus 43 ~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lkl 108 (109)
T PRK10650 43 AAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIKL 108 (109)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 44566788889999999988654 445588899999999999999999999999999999998764
No 80
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.69 E-value=0.0012 Score=54.43 Aligned_cols=131 Identities=15% Similarity=0.119 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCC-hHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHHHHHHH
Q 015427 264 GEWWMLLAAQSMAVGTVMVRWVSKYSD-PVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSA 342 (407)
Q Consensus 264 G~l~~l~sa~~~a~~~v~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~ 342 (407)
..++++++++.-++...+.-++.++.+ ++......+..+.+......++.+++.. .......|+ .++|.+..+
T Consensus 2 ~~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~----~~~~~~p~w--~~lGG~lG~ 75 (138)
T PF04657_consen 2 YILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSL----ASLSSVPWW--AYLGGLLGV 75 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccccc----chhccCChH--HhccHHHHH
Confidence 357889999999999999999888876 9999999999999999888888776522 111222222 223444455
Q ss_pred HHHHHHHHHhccCChhhHhhhh-hhhHHHHHHHHHH----HhCCCCCHHHHHHHHHHHHHHHH
Q 015427 343 ISYGVYFYSATKGSLTKLSSLT-FLTPMFASIFGFL----YLGETFSPLQLVGAAVTVVAIYL 400 (407)
Q Consensus 343 ~~~~l~~~al~~~~~~~~s~~~-~~~pv~a~i~~~~----~~~e~~~~~~~iG~~lil~g~~l 400 (407)
....+.....++.+++...... .-|.+.+++++.+ .-++++++.+++|.++++.|+++
T Consensus 76 ~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 76 FFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 5556678888999887665554 4788888899986 23577999999999999999864
No 81
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.68 E-value=0.0011 Score=62.69 Aligned_cols=134 Identities=14% Similarity=0.170 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhcc--CcCHHHHHHHHHHHHHHHHHHHHHH--hCCCCC------CChhhHHHHHHHHHH
Q 015427 117 EWAVLVSPFFFWGTAMVAMKEVLP--KAGTFFVAAFRLIPAGLLLITFASS--QGRKLP------SGFNAWVSIFLFALV 186 (407)
Q Consensus 117 ~~l~~~~~~~~~~~~~~~~k~~~~--~~~p~~~~~~r~~~~~l~~~~~~~~--~~~~~~------~~~~~~~~~~~~g~~ 186 (407)
|+++++++.++-|...+..+...+ +.++.+..+....++.+...+.+.. .+...+ ..+..+..+++..+.
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~ 234 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT 234 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 899999999999999999987776 4669999999999999988877766 322111 122344445555554
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcC
Q 015427 187 DASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAP 251 (407)
Q Consensus 187 ~~~~~~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~ 251 (407)
+ ..++.+.+.-.++.++...+++..+--+++.+++.++++++++..+|+|+++.+.|..+=..+
T Consensus 235 ~-~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~ 298 (303)
T PF08449_consen 235 G-ALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYA 298 (303)
T ss_pred H-HHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHh
Confidence 4 445667778889999999999999999999999999999999999999999999999886654
No 82
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.66 E-value=0.0017 Score=50.94 Aligned_cols=63 Identities=17% Similarity=0.216 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhhccchhhHHHH-hhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhh
Q 015427 187 DASCFQGFLAQGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLE 249 (407)
Q Consensus 187 ~~~~~~~~~~~al~~~~~s~a~~i-~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~ 249 (407)
+...++.+...++++.|++.+..+ .....+.+.+.+.+++||+++..+++++.+++.|++++.
T Consensus 44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 344567788999999999999977 678899999999999999999999999999999999863
No 83
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.60 E-value=0.00063 Score=52.99 Aligned_cols=66 Identities=20% Similarity=0.229 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHhhccchhhHHHH-hhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhc
Q 015427 185 LVDASCFQGFLAQGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEA 250 (407)
Q Consensus 185 ~~~~~~~~~~~~~al~~~~~s~a~~i-~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~ 250 (407)
+.+...++.+...++++.|.+.+..+ .....+.+.+.+.+++||+++..+++++.++++|++.+..
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 33445567788999999999999977 6699999999999999999999999999999999998753
No 84
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.51 E-value=0.00065 Score=63.72 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=85.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHHHH
Q 015427 260 LWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIF 339 (407)
Q Consensus 260 ~~~~G~l~~l~sa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~ 339 (407)
++.+|..+++.++++.+....+.|+...+.+....-. +.. ...-.....|+ .|.+
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~------------------~~~---~~~~l~~~~W~----~G~~ 58 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRA------------------GSG---GRSYLRRPLWW----IGLL 58 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc------------------cch---hhHHHhhHHHH----HHHH
Confidence 3568999999999999999999998644432100000 000 00000111222 2233
Q ss_pred HHHHHHHHHHHHhccCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 015427 340 GSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN 402 (407)
Q Consensus 340 ~~~~~~~l~~~al~~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~ 402 (407)
..+++..+...|+...|++.++++..+..++..+++..++||+++..+++|.++++.|..++.
T Consensus 59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence 345566677889999999999999999999999999999999999999999999999997654
No 85
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.34 E-value=0.0001 Score=65.63 Aligned_cols=135 Identities=14% Similarity=0.102 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCChhhHHHHHHHHHHHHHHHHH
Q 015427 115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQ-GRKLPSGFNAWVSIFLFALVDASCFQG 193 (407)
Q Consensus 115 ~~~~l~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~ 193 (407)
.++....+.++++-+...++.|...++.+.......-.+++.+..++.+..- .-..|...++|+....+|+++. ++++
T Consensus 190 ~~gt~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~cgkdr~l~~~lGvfgf-igQI 268 (346)
T KOG4510|consen 190 IPGTVAAISSVLFGASVYIILRYIGKNAHAIMSVSYFSLITLVVSLIGCASIGAVQLPHCGKDRWLFVNLGVFGF-IGQI 268 (346)
T ss_pred CCchHHHHHhHhhhhhHHHHHHHhhccccEEEEehHHHHHHHHHHHHHHhhccceecCccccceEEEEEehhhhh-HHHH
Confidence 3346667777888888888888887765532222222233333322222222 3344667788888888999874 4888
Q ss_pred HHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhc
Q 015427 194 FLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEA 250 (407)
Q Consensus 194 ~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~ 250 (407)
+...++|.--++..++.+++..++..+.-.++++|.++.+.|.|+++++...+.+..
T Consensus 269 llTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~ 325 (346)
T KOG4510|consen 269 LLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVAL 325 (346)
T ss_pred HHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHH
Confidence 999999999999999999999999999999999999999999999888776666554
No 86
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.32 E-value=0.0036 Score=59.39 Aligned_cols=141 Identities=13% Similarity=0.059 Sum_probs=96.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHHHHH
Q 015427 261 WGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFG 340 (407)
Q Consensus 261 ~~~G~l~~l~sa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~ 340 (407)
...|+++.++++++++..++-.|+. ++-+-...=....++..++.....-....+.+.....+.+...+..-+..|++
T Consensus 5 ~~~G~~~~~i~~~~~GS~~~p~K~~-k~w~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~~- 82 (345)
T PRK13499 5 IILGIIWHLIGGASSGSFYAPFKKV-KKWSWETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGAL- 82 (345)
T ss_pred hHHHHHHHHHHHHHhhccccccccc-CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHHH-
Confidence 4579999999999999999999994 44342222111111222222211111222322223344567677766656644
Q ss_pred HHHHHHHHHHHhccCChhhHhhhhh-hhHHHHHHHHHHHhCCCC---C----HHHHHHHHHHHHHHHHhcc
Q 015427 341 SAISYGVYFYSATKGSLTKLSSLTF-LTPMFASIFGFLYLGETF---S----PLQLVGAAVTVVAIYLVNF 403 (407)
Q Consensus 341 ~~~~~~l~~~al~~~~~~~~s~~~~-~~pv~a~i~~~~~~~e~~---~----~~~~iG~~lil~g~~l~~~ 403 (407)
=.+++..+..++++.+.+...++.. ++-+.+.+++.+++||-. + ..-.+|.+++++|+.+..+
T Consensus 83 W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 83 WGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred HHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 5668889999999999998888776 899999999999999765 2 3458899999999999887
No 87
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.30 E-value=0.0026 Score=48.64 Aligned_cols=55 Identities=20% Similarity=0.237 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhhccchhhHHHH-hhcHHHHHHHHHHHHcCCcchHHHHHHHHHH
Q 015427 187 DASCFQGFLAQGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVGAGGLVLG 241 (407)
Q Consensus 187 ~~~~~~~~~~~al~~~~~s~a~~i-~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~ 241 (407)
+...++.++..++++.|.+.+..+ ..+..+.+.+.+.+++||+++..+++|+.++
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 445577799999999999999877 5699999999999999999999999998763
No 88
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=97.19 E-value=0.0057 Score=57.45 Aligned_cols=141 Identities=11% Similarity=0.050 Sum_probs=108.8
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHhhccC----cCHHHHHHHHHHHHHHHHHHHH----HHhCCCCC-CChhhHHHHHH
Q 015427 112 LGMLLEWAVLVSPFFFWGTAMVAMKEVLPK----AGTFFVAAFRLIPAGLLLITFA----SSQGRKLP-SGFNAWVSIFL 182 (407)
Q Consensus 112 ~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~----~~p~~~~~~r~~~~~l~~~~~~----~~~~~~~~-~~~~~~~~~~~ 182 (407)
.+...|-++.++++++||.+.++.|.-.++ +|--.+..+--++..++++|.. +....+.. ++..+...+++
T Consensus 243 ~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~ 322 (416)
T KOG2765|consen 243 SRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVF 322 (416)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeH
Confidence 456889999999999999999999765442 4533333333445555555433 22223332 33356666777
Q ss_pred HHHHHHHHHHHHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCC
Q 015427 183 FALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (407)
Q Consensus 183 ~g~~~~~~~~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~ 252 (407)
.++++..++-.++..|.-.+++-.+++-..++..+.++...++-+.+++...++|.+.+++|-+++...+
T Consensus 323 ~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~ 392 (416)
T KOG2765|consen 323 NNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISS 392 (416)
T ss_pred hhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccc
Confidence 8888888888999999999999999998999999999999999999999999999999999999998876
No 89
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.09 E-value=0.0059 Score=46.63 Aligned_cols=56 Identities=20% Similarity=0.284 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhccCChhhHhhh-hhhhHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 015427 339 FGSAISYGVYFYSATKGSLTKLSSL-TFLTPMFASIFGFLYLGETFSPLQLVGAAVT 394 (407)
Q Consensus 339 ~~~~~~~~l~~~al~~~~~~~~s~~-~~~~pv~a~i~~~~~~~e~~~~~~~iG~~li 394 (407)
.+.++++.++.+++|+.+.+.+-++ ..+..+...+.+.++|||+++..+++|..+|
T Consensus 37 ~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 37 VGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 4566778899999999999988554 5599999999999999999999999999876
No 90
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.90 E-value=0.043 Score=45.35 Aligned_cols=139 Identities=12% Similarity=0.135 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccCC-hHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHHHHHH
Q 015427 263 SGEWWMLLAAQSMAVGTVMVRWVSKYSD-PVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGS 341 (407)
Q Consensus 263 ~G~l~~l~sa~~~a~~~v~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~ 341 (407)
...+.+++++.+-.+..-+.-++.+..+ |.......+..+.+.+..+.++.++..... ...+...|.++. |+++
T Consensus 5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a--~~~~~pwW~~~G--G~lG- 79 (150)
T COG3238 5 LYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLA--AVASAPWWAWIG--GLLG- 79 (150)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchh--hccCCchHHHHc--cchh-
Confidence 4677888888888888888888777665 777777777788887777777754432211 111222233222 2222
Q ss_pred HHHHHHHHHHhccCCh-hhHhhhhhhhHHHHHHHHHHHhC----CCCCHHHHHHHHHHHHHHHHhcccCC
Q 015427 342 AISYGVYFYSATKGSL-TKLSSLTFLTPMFASIFGFLYLG----ETFSPLQLVGAAVTVVAIYLVNFRGS 406 (407)
Q Consensus 342 ~~~~~l~~~al~~~~~-~~~s~~~~~~pv~a~i~~~~~~~----e~~~~~~~iG~~lil~g~~l~~~~~~ 406 (407)
++--..-.....+.++ .+....-.-|.+.+++++.+=+. .+++...++|++++++|+++..+.++
T Consensus 80 a~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~~~ 149 (150)
T COG3238 80 AIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRFGA 149 (150)
T ss_pred hhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccccc
Confidence 2222233445556555 46666777889999999887544 67999999999999999777766654
No 91
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.75 E-value=0.071 Score=44.10 Aligned_cols=133 Identities=14% Similarity=0.074 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhccCcC-HHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--hhhHHHHHHHHHHHHHHHH
Q 015427 116 LEWAVLVSPFFFWGTAMVAMKEVLPKAG-TFFVAAFRLIPAGLLLITFASSQGRKLPSG--FNAWVSIFLFALVDASCFQ 192 (407)
Q Consensus 116 ~~~l~~~~~~~~~~~~~~~~k~~~~~~~-p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~ 192 (407)
..++..+.+..+-.....++-.+.+..+ |....++.+..+.+++..+...+.++.+.. .+..++.++.|.++.. ..
T Consensus 5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~-~v 83 (150)
T COG3238 5 LYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAI-FV 83 (150)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhh-hh
Confidence 3455556666666777777755556555 999999999999998888777754444332 3445566666655433 44
Q ss_pred HHHHHHhhccchhhHHHH-hhcHHHHHHHHHHHHc----CCcchHHHHHHHHHHHHHHHHhh
Q 015427 193 GFLAQGLQRTSAGLGSVI-IDSQPLSVAVLAALLF----GESIGLVGAGGLVLGVIGLLLLE 249 (407)
Q Consensus 193 ~~~~~al~~~~~s~a~~i-~~~~p~~~~lla~l~l----~e~~~~~~~~~~~l~~~Gv~l~~ 249 (407)
..-.....+..++....+ ..-+-+...++..+=+ +++++..+++|+++.++|+.++.
T Consensus 84 t~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 84 TSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred hhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 444556666666666644 5556666666665544 37889999999999999955554
No 92
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=96.75 E-value=0.009 Score=54.38 Aligned_cols=66 Identities=20% Similarity=0.248 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHhccCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccc
Q 015427 339 FGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFR 404 (407)
Q Consensus 339 ~~~~~~~~l~~~al~~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~~ 404 (407)
+.-.++..+.+.++++.+|++..++..++.+++.+++++++|++++..||++..+..+|+.++...
T Consensus 25 ~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~ 90 (244)
T PF04142_consen 25 LLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLS 90 (244)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecC
Confidence 346667888899999999999999999999999999999999999999999999999999987654
No 93
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.69 E-value=0.024 Score=51.93 Aligned_cols=137 Identities=16% Similarity=0.180 Sum_probs=108.8
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHhhccC--cCHHHHHHHHHHHHHHHHHHHHHHhCCCCC------CChhhHHHHHHH
Q 015427 112 LGMLLEWAVLVSPFFFWGTAMVAMKEVLPK--AGTFFVAAFRLIPAGLLLITFASSQGRKLP------SGFNAWVSIFLF 183 (407)
Q Consensus 112 ~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~--~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~ 183 (407)
.++..|++++....++=|..+...+.+.+. ++++++.+.-.++..+....+....+.-.+ ..++-++-++++
T Consensus 168 ~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~ 247 (327)
T KOG1581|consen 168 ENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLY 247 (327)
T ss_pred CCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHH
Confidence 356789999999999889888888776664 779999888888888887777655544321 234556666777
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhh
Q 015427 184 ALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLE 249 (407)
Q Consensus 184 g~~~~~~~~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~ 249 (407)
+.++ +.++.+.|+-++.-.+-.-++|+-+--+++.+++.+.++.+++..+|+|+.+.++|+.+=.
T Consensus 248 s~~g-avGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~ 312 (327)
T KOG1581|consen 248 STCG-AVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEI 312 (327)
T ss_pred HHhh-hhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHH
Confidence 7765 4477788889988877777788888999999999999999999999999999999987643
No 94
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.62 E-value=0.0073 Score=56.64 Aligned_cols=136 Identities=15% Similarity=0.167 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhhcc----CcCHHHHHHHHHHHHHHHHH-HHHHHhCCCCC-------CChhhHHHHH
Q 015427 114 MLLEWAVLVSPFFFWGTAMVAMKEVLP----KAGTFFVAAFRLIPAGLLLI-TFASSQGRKLP-------SGFNAWVSIF 181 (407)
Q Consensus 114 ~~~~~l~~~~~~~~~~~~~~~~k~~~~----~~~p~~~~~~r~~~~~l~~~-~~~~~~~~~~~-------~~~~~~~~~~ 181 (407)
...|.+..+++.+..+...++.|.... ++++..+.....-++.++++ |+....+.... .... ...+.
T Consensus 161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~-~~~~~ 239 (316)
T KOG1441|consen 161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT-FLILL 239 (316)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh-hHHHH
Confidence 478999999999999999999987773 48899999888888888888 88776544322 2222 33344
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcC
Q 015427 182 LFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAP 251 (407)
Q Consensus 182 ~~g~~~~~~~~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~ 251 (407)
+...+.+. .+...|..+.++++-.-++...+--.++...++++++++++..+.+|..++++|+.+=..-
T Consensus 240 ~~sv~~f~-~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~ 308 (316)
T KOG1441|consen 240 LNSVLAFL-LNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRA 308 (316)
T ss_pred HHHHHHHH-HHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHH
Confidence 44455444 4567889999999998888888888888899999999999999999999999999986543
No 95
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=96.62 E-value=0.079 Score=48.20 Aligned_cols=166 Identities=15% Similarity=0.115 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 015427 117 EWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLA 196 (407)
Q Consensus 117 ~~l~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 196 (407)
|++..+++.+++|++++-.|.. +.-|++.+-++-.....+.-+......+.+ +-..+.++-|.+... ++.+..
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~-~~gDg~~fQw~~~~~i~~~g~~v~~~~~~p-----~f~p~amlgG~lW~~-gN~~~v 73 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKF-DTGDGFFFQWVMCSGIFLVGLVVNLILGFP-----PFYPWAMLGGALWAT-GNILVV 73 (254)
T ss_pred CchhHHHHHHHhcccceeeEec-cCCCcHHHHHHHHHHHHHHHHHHHHhcCCC-----cceeHHHhhhhhhhc-Cceeeh
Confidence 4567889999999999999974 455676666665555555555554443322 223345556666544 677889
Q ss_pred HHhhccchhhHHHHhhcHHHHHHHH-HHH-HcCCc-----chHHHHHHHHHHHHHHHHhhcCCCC---------------
Q 015427 197 QGLQRTSAGLGSVIIDSQPLSVAVL-AAL-LFGES-----IGLVGAGGLVLGVIGLLLLEAPAFD--------------- 254 (407)
Q Consensus 197 ~al~~~~~s~a~~i~~~~p~~~~ll-a~l-~l~e~-----~~~~~~~~~~l~~~Gv~l~~~~~~~--------------- 254 (407)
-.++....+....+-++.-+++--. +++ +++++ -+...++|++++++|..+...-..+
T Consensus 74 pii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~~~~~ 153 (254)
T PF07857_consen 74 PIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEETPLSI 153 (254)
T ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCCCcccccccccccc
Confidence 9999999999999977655544433 332 34332 2466788999999998877542100
Q ss_pred --------C-------CCc------chhhhHHHHHHHHHHHHHHHHHHHHhhcccC
Q 015427 255 --------E-------SNS------SLWGSGEWWMLLAAQSMAVGTVMVRWVSKYS 289 (407)
Q Consensus 255 --------~-------~~~------~~~~~G~l~~l~sa~~~a~~~v~~r~~~~~~ 289 (407)
+ +.. ..+..|..+++++++.|+...+=..+++++.
T Consensus 154 ~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~ 209 (254)
T PF07857_consen 154 EDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDHP 209 (254)
T ss_pred ccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhCc
Confidence 0 000 0255799999999999998877666655443
No 96
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.41 E-value=0.017 Score=45.46 Aligned_cols=108 Identities=16% Similarity=0.155 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 015427 270 LAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYF 349 (407)
Q Consensus 270 ~sa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~l~~ 349 (407)
+-++.|++.+-+.|+..+..+...... +.+-.... + -.++..+... .....+-..|+
T Consensus 3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~~-~~~~~~~~-----L------------l~n~~y~ipf-----~lNq~GSv~f~ 59 (113)
T PF10639_consen 3 LVGILWGCTNPFIKRGSSGLEKVKASL-QLLQEIKF-----L------------LLNPKYIIPF-----LLNQSGSVLFF 59 (113)
T ss_pred eehHHhcCchHHHHHHHhhcCCccchH-HHHHHHHH-----H------------HHhHHHHHHH-----HHHHHHHHHHH
Confidence 446788999999999766544332221 11111111 0 0122233222 22334556778
Q ss_pred HHhccCChhhHhhh-hhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 015427 350 YSATKGSLTKLSSL-TFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYL 400 (407)
Q Consensus 350 ~al~~~~~~~~s~~-~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l 400 (407)
..+.+.+-+.+.++ +.+.-+++.+.++++.+|..+...++|.+++++|+.+
T Consensus 60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 88999999999888 5899999999999888888899999999999999865
No 97
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.14 E-value=0.064 Score=48.08 Aligned_cols=59 Identities=12% Similarity=0.015 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHH
Q 015427 189 SCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLL 247 (407)
Q Consensus 189 ~~~~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l 247 (407)
+.+..+..+.+++.+....++...+.++++.+++.++++|+++..+++|+.+.+.|+.+
T Consensus 163 a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 163 VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 44556788899999999999999999999999999999999999999999999988653
No 98
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=95.96 E-value=0.0053 Score=54.37 Aligned_cols=132 Identities=20% Similarity=0.226 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHHHHHHHH
Q 015427 264 GEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAI 343 (407)
Q Consensus 264 G~l~~l~sa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~ 343 (407)
+++.+++=++.|+..-....+... +|.+-+.-.. +++++.....++...| ..+...+..-+.-|++ =.+
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~GG--~p~qQ~lGtT-~GALifaiiv~~~~~p-------~~T~~~~iv~~isG~~-Ws~ 71 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFGG--KPYQQTLGTT-LGALIFAIIVFLFVSP-------ELTLTIFIVGFISGAF-WSF 71 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecCC--ChhHhhhhcc-HHHHHHHHHHheeecC-------ccchhhHHHHHHhhhH-hhh
Confidence 578899999999988777666543 3444333333 3444444333333333 2344444434444433 445
Q ss_pred HHHHHHHHhccCChhhHhhhhh-hhHHHHHHHHHHHhCCCCCHHH----HHHHHHHHHHHHHhcccCC
Q 015427 344 SYGVYFYSATKGSLTKLSSLTF-LTPMFASIFGFLYLGETFSPLQ----LVGAAVTVVAIYLVNFRGS 406 (407)
Q Consensus 344 ~~~l~~~al~~~~~~~~s~~~~-~~pv~a~i~~~~~~~e~~~~~~----~iG~~lil~g~~l~~~~~~ 406 (407)
++..++++++..+.+++.++.. +|-+-+.++++++|||..++.+ .+..++++.|+++..++++
T Consensus 72 GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~ 139 (288)
T COG4975 72 GQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR 139 (288)
T ss_pred hhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence 7778899999999999999987 8999999999999999998776 3455788899988877664
No 99
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=95.73 E-value=0.42 Score=45.04 Aligned_cols=136 Identities=13% Similarity=0.105 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccC----ChHHHHHHHHHHHHHHHHHHHHHhcCC---Ccc---cccccCCHHHHHHHHH
Q 015427 266 WWMLLAAQSMAVGTVMVRWVSKYS----DPVMATGWHMVIGGLPLMVISVLNHDP---VYG---ESVKELTSSDILALLY 335 (407)
Q Consensus 266 l~~l~sa~~~a~~~v~~r~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~ll~ 335 (407)
+..+...+-.+......|+..++. .+.+..+..=++-.+++....+...+. ... ......++.+..-+..
T Consensus 18 ~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~v 97 (345)
T KOG2234|consen 18 LSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSV 97 (345)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHH
Confidence 344444455555555566544332 344444444445555555555544311 000 0111112212222221
Q ss_pred HHHHHHHHHHHHHHHHhccCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 015427 336 TSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN 402 (407)
Q Consensus 336 ~g~~~~~~~~~l~~~al~~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~ 402 (407)
= .+.-++++.+++.++.+.+|++..+...++.+.+.++..++++++++..||...++...|+.++.
T Consensus 98 P-a~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 98 P-ALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred H-HHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 2 23355677788999999999999999999999999999999999999999999999999999887
No 100
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.62 E-value=0.33 Score=45.04 Aligned_cols=136 Identities=13% Similarity=0.072 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhcc--CcCHHHHHHHHHHHHHHHHHHHHHHhCCCC--------CCChhhHHHHHHHH
Q 015427 115 LLEWAVLVSPFFFWGTAMVAMKEVLP--KAGTFFVAAFRLIPAGLLLITFASSQGRKL--------PSGFNAWVSIFLFA 184 (407)
Q Consensus 115 ~~~~l~~~~~~~~~~~~~~~~k~~~~--~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~--------~~~~~~~~~~~~~g 184 (407)
..|+.++....+.-....+..|+..+ +.+-+.+.+...++..+.+....+..+... ......+..+.+.+
T Consensus 156 ~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lSc 235 (314)
T KOG1444|consen 156 LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSC 235 (314)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHH
Confidence 44788888888888888888887776 456788888888888888877775554311 12224456667777
Q ss_pred HHHHHHHHHHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcC
Q 015427 185 LVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAP 251 (407)
Q Consensus 185 ~~~~~~~~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~ 251 (407)
+++..+++ +.+++.+..++...++.-...-..+.+...++.++++++...+|+.++++|-++=.+.
T Consensus 236 v~gf~isy-~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~ 301 (314)
T KOG1444|consen 236 VMGFGISY-TSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYA 301 (314)
T ss_pred HHHHHHHH-HHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhh
Confidence 77777665 7789999999888888887777778888888888999999999999999998776543
No 101
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=94.43 E-value=0.032 Score=47.72 Aligned_cols=61 Identities=18% Similarity=0.348 Sum_probs=56.6
Q ss_pred HHHHHHHhccCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccC
Q 015427 345 YGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 405 (407)
Q Consensus 345 ~~l~~~al~~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~~~ 405 (407)
..+|..|+++.+|+.++.+..-+-.+..+++++++|+++....++.+++.+.|++++.+.+
T Consensus 67 NY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~D 127 (290)
T KOG4314|consen 67 NYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYAD 127 (290)
T ss_pred CcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEecc
Confidence 4588999999999999999999999999999999999999999999999999998887643
No 102
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=93.77 E-value=0.41 Score=42.36 Aligned_cols=135 Identities=13% Similarity=0.028 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhccCc--CHHHHHHHHHHHHHHHHHHHHHHhCCCC------CCChhhHHHHHHHHHHH
Q 015427 116 LEWAVLVSPFFFWGTAMVAMKEVLPKA--GTFFVAAFRLIPAGLLLITFASSQGRKL------PSGFNAWVSIFLFALVD 187 (407)
Q Consensus 116 ~~~l~~~~~~~~~~~~~~~~k~~~~~~--~p~~~~~~r~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~ 187 (407)
.|-++++++..+=|.........-.+. +.....+.-.+-..+.+..-+++.+.-+ .+.+..++.+.+.++.+
T Consensus 172 ~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai~s 251 (337)
T KOG1580|consen 172 FGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAIAS 251 (337)
T ss_pred hHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 455666666666666666653322211 1222233333333333332222222211 11235666677777654
Q ss_pred HHHHHHHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcC
Q 015427 188 ASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAP 251 (407)
Q Consensus 188 ~~~~~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~ 251 (407)
.+++.+.+.-..+-++-.-+++..+--+|+++.+.++++.+++.+||+|.++.+.|...=...
T Consensus 252 -~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~ 314 (337)
T KOG1580|consen 252 -CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVD 314 (337)
T ss_pred -HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhc
Confidence 457778888888888888888899999999999999999999999999999999998765443
No 103
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=93.39 E-value=0.58 Score=35.80 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhHHHHHHhhccCcC----H--HHHHHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 015427 120 VLVSPFFFWGTAMVAMKEVLPKAG----T--FFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQG 193 (407)
Q Consensus 120 ~~~~~~~~~~~~~~~~k~~~~~~~----p--~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 193 (407)
-++...++||..+.+.|......+ + ....++|-..... -.+.+++.=.++.. +..
T Consensus 7 ~lvaVgllWG~Tnplirrgs~g~~~v~~~~~k~~~~lqe~~tl~------------------l~w~Y~iPFllNqc-gSa 67 (125)
T KOG4831|consen 7 KLVAVGLLWGATNPLIRRGSLGWDKVKSSSRKIMIALQEMKTLF------------------LNWEYLIPFLLNQC-GSA 67 (125)
T ss_pred HHHHHHHHHccccHHHHHHHhhHhhccCchHHHHHHHHHHHHHH------------------HhHHHHHHHHHHHh-hHH
Confidence 356778999999999987665432 2 2222222222111 11222233333444 345
Q ss_pred HHHHHhhccchhhHHHH-hhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHh
Q 015427 194 FLAQGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLL 248 (407)
Q Consensus 194 ~~~~al~~~~~s~a~~i-~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~ 248 (407)
+||.-+++.+.+.+..+ ++++-.|+.+.+..+-.|.......+|..+.++|+.+.
T Consensus 68 ly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 68 LYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 88999999999999977 67788999999965555666777889999999998764
No 104
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=93.23 E-value=0.78 Score=40.35 Aligned_cols=132 Identities=12% Similarity=0.159 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhcc--CcCHHHHHHHHHHHHHHHHHHHHHHhCCCCC------CChhhHHHHHHHHHHHH
Q 015427 117 EWAVLVSPFFFWGTAMVAMKEVLP--KAGTFFVAAFRLIPAGLLLITFASSQGRKLP------SGFNAWVSIFLFALVDA 188 (407)
Q Consensus 117 ~~l~~~~~~~~~~~~~~~~k~~~~--~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~ 188 (407)
|++++...++.-+......|...+ +..-++..+...+++..+++.+-+..+..-+ .+.....++++.|....
T Consensus 156 GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~sv 235 (309)
T COG5070 156 GYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSV 235 (309)
T ss_pred ceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHh
Confidence 556665555555555555555444 4557788999999999888877666544322 23344556777777776
Q ss_pred HHHHHHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhh
Q 015427 189 SCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLE 249 (407)
Q Consensus 189 ~~~~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~ 249 (407)
++++ |.-+.++-++....+++-++.-.-.++.+.++++|+.+...+.++++++...++-.
T Consensus 236 giSy-~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYa 295 (309)
T COG5070 236 GISY-CSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYA 295 (309)
T ss_pred hhhh-ccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 6665 77889999999999999999999999999999999999999988888776555443
No 105
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=93.11 E-value=1.8 Score=40.86 Aligned_cols=142 Identities=12% Similarity=-0.018 Sum_probs=92.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHHHHH
Q 015427 261 WGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFG 340 (407)
Q Consensus 261 ~~~G~l~~l~sa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~ 340 (407)
...|+++-.+++++.+.+++-.||.+ +-+-...=..+.+++.++.-.......-|....-....+...+......|++
T Consensus 5 ii~Gii~h~iGg~~~~sfy~P~kkvk-~WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~l- 82 (344)
T PF06379_consen 5 IILGIIFHAIGGFASGSFYVPFKKVK-GWSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGVL- 82 (344)
T ss_pred HHHHHHHHHHHHHHhhhhccchhhcC-CccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHHH-
Confidence 45799999999999999999999974 4444444444555555555444444444444333344555566666666655
Q ss_pred HHHHHHHHHHHhccCChhhH-hhhhhhhHHHHHHHHHHHhC-------CCCCHHHHHHHHHHHHHHHHhccc
Q 015427 341 SAISYGVYFYSATKGSLTKL-SSLTFLTPMFASIFGFLYLG-------ETFSPLQLVGAAVTVVAIYLVNFR 404 (407)
Q Consensus 341 ~~~~~~l~~~al~~~~~~~~-s~~~~~~pv~a~i~~~~~~~-------e~~~~~~~iG~~lil~g~~l~~~~ 404 (407)
=+++-..|-.++|+++.+.. ++..-+..++..++--++.| ++-....++|.++.++|+.+..+.
T Consensus 83 WGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A 154 (344)
T PF06379_consen 83 WGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKA 154 (344)
T ss_pred HhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHH
Confidence 34455677888999887643 33444666666666555533 233456799999999999987653
No 106
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.87 E-value=0.047 Score=50.52 Aligned_cols=118 Identities=12% Similarity=0.081 Sum_probs=87.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHHHH
Q 015427 260 LWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIF 339 (407)
Q Consensus 260 ~~~~G~l~~l~sa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~ 339 (407)
++.+|.++++.+.+..+...++.|+..++......- ..+++ . .-.....|+ .|++
T Consensus 18 d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~~r----------------a~~gg-~----~yl~~~~Ww----~G~l 72 (335)
T KOG2922|consen 18 DNIIGLVLAISSSIFIGSSFILKKKGLKRAGASGLR----------------AGEGG-Y----GYLKEPLWW----AGML 72 (335)
T ss_pred CceeeeeehhhccEEEeeehhhhHHHHHHHhhhccc----------------ccCCC-c----chhhhHHHH----HHHH
Confidence 345899999999999999999988876553320000 00111 0 001111222 4556
Q ss_pred HHHHHHHHHHHHhccCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 015427 340 GSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN 402 (407)
Q Consensus 340 ~~~~~~~l~~~al~~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~ 402 (407)
..+++-.+.+.|....|++.++++..++.+...+++..+++|+++....+|+++.++|..++.
T Consensus 73 tm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV 135 (335)
T KOG2922|consen 73 TMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIV 135 (335)
T ss_pred HHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEE
Confidence 677778888888899999999999999999999999999999999999999999999887654
No 107
>PRK02237 hypothetical protein; Provisional
Probab=92.56 E-value=2 Score=33.20 Aligned_cols=53 Identities=11% Similarity=-0.019 Sum_probs=40.7
Q ss_pred hhc-cchhhHHHH-hhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcC
Q 015427 199 LQR-TSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAP 251 (407)
Q Consensus 199 l~~-~~~s~a~~i-~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~ 251 (407)
++- .+.+.+..- -....+.+.+..+++-|+|+++.+++|..+|++|+.++...
T Consensus 52 l~p~~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~ 106 (109)
T PRK02237 52 LQPDAAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA 106 (109)
T ss_pred cCCchhhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence 443 334555433 44566777788999999999999999999999999988653
No 108
>PRK02237 hypothetical protein; Provisional
Probab=91.11 E-value=2 Score=33.20 Aligned_cols=48 Identities=10% Similarity=0.113 Sum_probs=41.8
Q ss_pred hHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccCC
Q 015427 359 KLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS 406 (407)
Q Consensus 359 ~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~~~~ 406 (407)
..+...-.-.+.++++++.+-|++|+...++|+++.++|+.++.+..|
T Consensus 61 vYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR 108 (109)
T PRK02237 61 VYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR 108 (109)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence 445667788899999999999999999999999999999988876554
No 109
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=90.87 E-value=2.8 Score=32.35 Aligned_cols=54 Identities=13% Similarity=0.005 Sum_probs=43.1
Q ss_pred HhhccchhhHHHH-hhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcC
Q 015427 198 GLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAP 251 (407)
Q Consensus 198 al~~~~~s~a~~i-~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~ 251 (407)
.++-.+.+.+... -....+.+.+..+.+-|+++++.+++|..+|++|+.++...
T Consensus 50 Tl~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 50 TLQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred hcCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 3555555555544 45667888889999999999999999999999999998764
No 110
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=90.53 E-value=0.57 Score=42.64 Aligned_cols=65 Identities=14% Similarity=0.234 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHhccCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcc
Q 015427 339 FGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF 403 (407)
Q Consensus 339 ~~~~~~~~l~~~al~~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~ 403 (407)
+|-..+..+.+.++...+++...++...-.+++-+++.-+++..++..+|+|+..+++|.+.+-.
T Consensus 94 l~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~ 158 (372)
T KOG3912|consen 94 LCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGS 158 (372)
T ss_pred HHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeee
Confidence 55666777888999999999999999999999999999999999999999999999999987643
No 111
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=90.07 E-value=6.3 Score=36.59 Aligned_cols=133 Identities=14% Similarity=-0.001 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhccCcC-----HHHHHHHHHHHHHHHHHHHHHHhCCCCCC---------Ch----hh
Q 015427 115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAG-----TFFVAAFRLIPAGLLLITFASSQGRKLPS---------GF----NA 176 (407)
Q Consensus 115 ~~~~l~~~~~~~~~~~~~~~~k~~~~~~~-----p~~~~~~r~~~~~l~~~~~~~~~~~~~~~---------~~----~~ 176 (407)
..|..+..++.++-|.-+.+.+.+.++-| |....+--.-...+.++|..+..+...+. .. +.
T Consensus 163 i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv 242 (349)
T KOG1443|consen 163 IEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRV 242 (349)
T ss_pred ehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHH
Confidence 56788888888888988888877766432 54444333333334444443333322211 11 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHh
Q 015427 177 WVSIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLL 248 (407)
Q Consensus 177 ~~~~~~~g~~~~~~~~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~ 248 (407)
...+.+.|.+..... .+-+.=+..++.-..++.--.-=+.+.+++..+++++++...|+|..++..|+.+=
T Consensus 243 ~g~i~l~g~laF~l~-~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 243 IGLISLGGLLAFLLE-FSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHH-HHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 222223333322222 23344455555555555555556788899999999999999999999999999886
No 112
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.02 E-value=0.42 Score=43.33 Aligned_cols=136 Identities=18% Similarity=0.144 Sum_probs=92.5
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHhhccCcC--HHHHHHHHHHHHHHHHHHHHHHhCCCC-------CCChhhHHHHHHH
Q 015427 113 GMLLEWAVLVSPFFFWGTAMVAMKEVLPKAG--TFFVAAFRLIPAGLLLITFASSQGRKL-------PSGFNAWVSIFLF 183 (407)
Q Consensus 113 ~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~--p~~~~~~r~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 183 (407)
-...|.++.+.+.+.-+.+.+.+|..+..++ -+.++++..+.+.++++|.+...+.-. .+..+-|..+.+.
T Consensus 182 ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLs 261 (347)
T KOG1442|consen 182 LSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLS 261 (347)
T ss_pred cchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHH
Confidence 3577899999999999999999997766544 789999999999999999987765421 1233555566666
Q ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHhhc-HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhc
Q 015427 184 ALVDASCFQGFLAQGLQRTSAGLGSVIIDS-QPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEA 250 (407)
Q Consensus 184 g~~~~~~~~~~~~~al~~~~~s~a~~i~~~-~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~ 250 (407)
|++++..++.. .+=++.+++ .++-|..+ -...-.+++..+++|.-+...|-+-++.++|-.+-++
T Consensus 262 glfgF~mgyvT-g~QIK~TSp-lThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~ 327 (347)
T KOG1442|consen 262 GLFGFAMGYVT-GWQIKVTSP-LTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTL 327 (347)
T ss_pred HHHHHHhhhee-eEEEEeccc-ceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHH
Confidence 66665554422 222333332 22233222 2344456777899999998888888888887665543
No 113
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=89.46 E-value=2.7 Score=32.47 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=42.4
Q ss_pred hHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccCC
Q 015427 359 KLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS 406 (407)
Q Consensus 359 ~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~~~~ 406 (407)
..+...-.-.+.++++++.+-|++|+...++|+++.++|+.++.+..|
T Consensus 59 vYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR 106 (107)
T PF02694_consen 59 VYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR 106 (107)
T ss_pred HHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence 345666788999999999999999999999999999999999887665
No 114
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=89.20 E-value=1.8 Score=39.43 Aligned_cols=60 Identities=7% Similarity=0.067 Sum_probs=41.8
Q ss_pred chhhHHHHHHHHHHHHHHHhHHHHHHhhccCc--------CHHH----HHHHHHHHHHHHHHHHHHHhCCCC
Q 015427 111 ELGMLLEWAVLVSPFFFWGTAMVAMKEVLPKA--------GTFF----VAAFRLIPAGLLLITFASSQGRKL 170 (407)
Q Consensus 111 ~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~--------~p~~----~~~~r~~~~~l~~~~~~~~~~~~~ 170 (407)
..++..|+++.+++.+++|.+.+-.+++.++- .+.. ...--++.+.+.++.++..+|.+.
T Consensus 178 ~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~GIfltSt~~F~~Y~~~~rn~P 249 (254)
T PF07857_consen 178 RKKRIVGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSGIFLTSTVYFVIYCIIKRNKP 249 (254)
T ss_pred ccchhHhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhhHHHHHHHHHHHHHHhhcCCC
Confidence 34578899999999999999999998876653 2332 233344556666777777766554
No 115
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=89.07 E-value=3.4 Score=37.63 Aligned_cols=137 Identities=13% Similarity=0.080 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhcc--CcCHHHHHHHHHHHHHHHHHHHHHHhCCCC-------CCChhhHHHHHHHHH
Q 015427 115 LLEWAVLVSPFFFWGTAMVAMKEVLP--KAGTFFVAAFRLIPAGLLLITFASSQGRKL-------PSGFNAWVSIFLFAL 185 (407)
Q Consensus 115 ~~~~l~~~~~~~~~~~~~~~~k~~~~--~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~ 185 (407)
..|+...-.+.+.=+....+.....+ .-+..+.++..+.++..+++..+...+.-. .-+.+.....++.+.
T Consensus 189 ~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~ 268 (367)
T KOG1582|consen 189 LIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSL 268 (367)
T ss_pred eeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHH
Confidence 44555444444444444555433333 233677888888888888777766655432 123455666666665
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCC
Q 015427 186 VDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (407)
Q Consensus 186 ~~~~~~~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~ 252 (407)
.+.. +..+...=++.-.+..+..+...--..+.+++++++-++++....-+.++++.|+.+=..+.
T Consensus 269 ~gyl-G~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 269 AGYL-GIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HhHh-hHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 5433 44333333444566667777777888999999999999999999999999999999988765
No 116
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=84.18 E-value=65 Score=34.68 Aligned_cols=45 Identities=20% Similarity=0.261 Sum_probs=33.5
Q ss_pred hhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHh
Q 015427 204 AGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLL 248 (407)
Q Consensus 204 ~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~ 248 (407)
++.+.++..+.|+-.+.++.+.+.+|.+...+.+.+-.++|.+-+
T Consensus 10 lgRa~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 10 LGRAVIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISI 54 (764)
T ss_pred HhHHHHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 367788899999999999988877775445566666666776654
No 117
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=79.70 E-value=21 Score=32.81 Aligned_cols=134 Identities=14% Similarity=0.099 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHhhccC--cCHHHHHHHHHHHHHHHHHHHHH---------HhCCCC--C----CChh
Q 015427 113 GMLLEWAVLVSPFFFWGTAMVAMKEVLPK--AGTFFVAAFRLIPAGLLLITFAS---------SQGRKL--P----SGFN 175 (407)
Q Consensus 113 ~~~~~~l~~~~~~~~~~~~~~~~k~~~~~--~~p~~~~~~r~~~~~l~~~~~~~---------~~~~~~--~----~~~~ 175 (407)
.-..|+.++.++.+.-+.+.+......+. =++-+..++.-.+....++.+.- ++.++. + .-+.
T Consensus 161 ~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~ 240 (330)
T KOG1583|consen 161 WWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPS 240 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccH
Confidence 34567777888888888888887666664 34778888777776665554320 111100 1 1122
Q ss_pred hHHHHHHHHHHHHHHHHHHH--HHHhhc-cchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhc
Q 015427 176 AWVSIFLFALVDASCFQGFL--AQGLQR-TSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEA 250 (407)
Q Consensus 176 ~~~~~~~~g~~~~~~~~~~~--~~al~~-~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~ 250 (407)
.|..++.-... .+.|. .+.+.. ++.-..++...+--.++.+++.+.++.++++..|+|..+.++|..+-+.
T Consensus 241 ~~~yLl~n~L~----Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~ 314 (330)
T KOG1583|consen 241 MWVYLLFNVLT----QYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFAN 314 (330)
T ss_pred HHHHHHHHHHH----HHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 33333222221 22221 122221 2222333445566788899999999999999999999999999888764
No 118
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=77.36 E-value=2.7 Score=32.19 Aligned_cols=41 Identities=7% Similarity=-0.121 Sum_probs=35.2
Q ss_pred hhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcC
Q 015427 211 IDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAP 251 (407)
Q Consensus 211 ~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~ 251 (407)
-....+.+.+..++.-|.++++.+++|..+|++|+.++...
T Consensus 65 GGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 65 GGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred cchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 44566777888888899999999999999999999888764
No 119
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=75.24 E-value=14 Score=28.41 Aligned_cols=48 Identities=10% Similarity=0.094 Sum_probs=40.6
Q ss_pred hHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccCC
Q 015427 359 KLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS 406 (407)
Q Consensus 359 ~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~~~~ 406 (407)
..+...-.-.+.+.++...+=|..|+...++|.++.++|+.++....|
T Consensus 60 vYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~pR 107 (109)
T COG1742 60 VYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGPR 107 (109)
T ss_pred HHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCCC
Confidence 345566678899999999999999999999999999999888776544
No 120
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=72.80 E-value=66 Score=28.28 Aligned_cols=81 Identities=10% Similarity=-0.021 Sum_probs=31.2
Q ss_pred HHHHHHHhHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHH-HHhCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015427 123 SPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFA-SSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQR 201 (407)
Q Consensus 123 ~~~~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~ 201 (407)
+-.++.|....+.+...+..+...+.. -.+++.+++..+. +..+......+..+++.++.+..... .....+...+.
T Consensus 92 if~~~~gi~~~f~~~~~~~~gi~tli~-~~i~~G~~~~~~~~~i~~~~~~~~r~~~~k~~~~~~~~~~-~w~~~~~~~~~ 169 (206)
T PF06570_consen 92 IFSLLFGIMGFFSPKNSNQYGIITLIL-VSIVGGLVFYFIFKYIYPYKKKKKRPSWWKYILISVLAMV-LWIVIFVLTSF 169 (206)
T ss_pred HHHHHHHHHHHHhhcccccccHHHHHH-HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 334444555555543222233333333 3333433333333 32321222333444444444443333 22233334444
Q ss_pred cchh
Q 015427 202 TSAG 205 (407)
Q Consensus 202 ~~~s 205 (407)
.|..
T Consensus 170 lp~~ 173 (206)
T PF06570_consen 170 LPPV 173 (206)
T ss_pred cccc
Confidence 5544
No 121
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=69.58 E-value=1.2e+02 Score=30.04 Aligned_cols=102 Identities=15% Similarity=0.105 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHHHHHHH
Q 015427 263 SGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSA 342 (407)
Q Consensus 263 ~G~l~~l~sa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~ 342 (407)
.|+++..+.-+++-+.-+ .-+.+.||.+........+...++.+++-.+- .-.+.+++..+.++..
T Consensus 300 YgiLFI~LTF~~fflfE~---~~~~~iHpiQY~LVGlAl~lFYlLLLSlSEhi-----------~F~~AYliAa~a~i~L 365 (430)
T PF06123_consen 300 YGILFIGLTFLAFFLFEL---LSKLRIHPIQYLLVGLALVLFYLLLLSLSEHI-----------GFNLAYLIAALACIGL 365 (430)
T ss_pred HHHHHHHHHHHHHHHHHH---HhcCcccHHHHHHHHHHHHHHHHHHHHHHhhh-----------chHHHHHHHHHHHHHH
Confidence 455554444433333333 33356788887776666655555555443222 1234444444333333
Q ss_pred HHHHHHHHHhccCChhhHhhhhhhhHHHHHHHHHHHhC
Q 015427 343 ISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLG 380 (407)
Q Consensus 343 ~~~~l~~~al~~~~~~~~s~~~~~~pv~a~i~~~~~~~ 380 (407)
++ +|..++-+-.-.-......+..+.++++.++-..
T Consensus 366 i~--~Y~~~vl~~~k~~~~~~~~L~~LY~~Ly~lLq~E 401 (430)
T PF06123_consen 366 IS--LYLSSVLKSWKRGLIFAGLLAALYGFLYVLLQSE 401 (430)
T ss_pred HH--HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33 3334333322233333444556666666665443
No 122
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=68.17 E-value=5.2 Score=36.14 Aligned_cols=138 Identities=7% Similarity=0.042 Sum_probs=84.1
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCC-CChhhHHHHHHHHHHHHHHH
Q 015427 113 GMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLP-SGFNAWVSIFLFALVDASCF 191 (407)
Q Consensus 113 ~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~ 191 (407)
+..+|-.+.++++.+++.+++.-....++.|-.++...--++++++..+-....+++.. ..|..-....+..+++.+..
T Consensus 163 np~~GD~lvi~GATlYaVSNv~EEflvkn~d~~elm~~lgLfGaIIsaIQ~i~~~~~~~tl~w~~~i~~yl~f~L~MFll 242 (336)
T KOG2766|consen 163 NPVKGDFLVIAGATLYAVSNVSEEFLVKNADRVELMGFLGLFGAIISAIQFIFERHHVSTLHWDSAIFLYLRFALTMFLL 242 (336)
T ss_pred CCccCcEEEEecceeeeeccccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhhccceeeEeehHHHHHHHHHHHHHHHH
Confidence 34566778889999999999999988899998888888888888887776555544432 22221122222233332222
Q ss_pred HHHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCC
Q 015427 192 QGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (407)
Q Consensus 192 ~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~ 252 (407)
+.+.-.=++..++....+=.-+.-++..++ ..+|-++.+.-.++......|.++-...+
T Consensus 243 Ysl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re 301 (336)
T KOG2766|consen 243 YSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTRE 301 (336)
T ss_pred HHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeeccc
Confidence 222222223333333222233344444444 45566799999999999999988765544
No 123
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=66.96 E-value=1.8 Score=39.34 Aligned_cols=53 Identities=17% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHhhccchhhHHHHhhcHHHHHH-HHHHHHcC-CcchHHHHHHHHHHHHHHHHhh
Q 015427 197 QGLQRTSAGLGSVIIDSQPLSVA-VLAALLFG-ESIGLVGAGGLVLGVIGLLLLE 249 (407)
Q Consensus 197 ~al~~~~~s~a~~i~~~~p~~~~-lla~l~l~-e~~~~~~~~~~~l~~~Gv~l~~ 249 (407)
.-++-.+-+..+++.+...++++ ++-.+++| +-+-+.-.+++++++.-..+..
T Consensus 42 iimsd~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~ 96 (381)
T PF05297_consen 42 IIMSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSM 96 (381)
T ss_dssp -------------------------------------------------------
T ss_pred HHHhccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHH
Confidence 33444444445555444433333 33333344 4456667777777766555544
No 124
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=66.50 E-value=9 Score=29.54 Aligned_cols=30 Identities=27% Similarity=0.414 Sum_probs=25.8
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Q 015427 372 SIFGFLYLGETFSPLQLVGAAVTVVAIYLV 401 (407)
Q Consensus 372 ~i~~~~~~~e~~~~~~~iG~~lil~g~~l~ 401 (407)
..++.+++||++++..+.|.++++++++++
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 456778999999999999999999887754
No 125
>KOG2322 consensus N-methyl-D-aspartate receptor glutamate-binding subunit [Signal transduction mechanisms]
Probab=66.18 E-value=1e+02 Score=27.71 Aligned_cols=34 Identities=12% Similarity=-0.210 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh-hcccCChHHHHH
Q 015427 263 SGEWWMLLAAQSMAVGTVMVRW-VSKYSDPVMATG 296 (407)
Q Consensus 263 ~G~l~~l~sa~~~a~~~v~~r~-~~~~~~~~~~~~ 296 (407)
.-.+.+.++++.+..|.++.-+ ++++.+|....+
T Consensus 195 ~~~vya~lgAllf~~yl~~Dtqllm~~~SPEEYI~ 229 (237)
T KOG2322|consen 195 LVMVYAALGALLFCGYLVYDTQLLMGRISPEEYIF 229 (237)
T ss_pred HHHHHHHHHHHHHhHHHHhhhHHHhccCCHHHHHH
Confidence 5677888888888888887544 556777766543
No 126
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=63.32 E-value=1.2e+02 Score=27.77 Aligned_cols=120 Identities=18% Similarity=0.182 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhcc-Cc-CHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCChhhHHHHHHHHHHHHHHH
Q 015427 115 LLEWAVLVSPFFFWGTAMVAMKEVLP-KA-GTFFVAAFRLIPAGLLLITFASSQGR-KLPSGFNAWVSIFLFALVDASCF 191 (407)
Q Consensus 115 ~~~~l~~~~~~~~~~~~~~~~k~~~~-~~-~p~~~~~~r~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~ 191 (407)
.+-..+++++.+--+......|...+ .. +......+-.++..++++..-..+++ +.+...-.++..++.|+++.. +
T Consensus 79 ~~~~~~iiiatip~~v~G~~~~~~i~~~~~~~~~~v~~~Li~~g~lL~~~~~~~~~~~~~~~~~~~~dal~iGl~Q~l-A 157 (259)
T PF02673_consen 79 RRLLLLIIIATIPTGVVGLLFKDFIEALFFSSPLVVAIALIITGLLLWLADRLKRKGRKDEEDITFKDALIIGLAQGL-A 157 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHccCCCCCcccCCHHHHHHHHHHHHc-c
Confidence 33445566666666766666544333 34 22234455555555554444333333 233333455666677765422 1
Q ss_pred HHHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHc---CCcchHHHHHHHHHHHHHHHHhhcCC
Q 015427 192 QGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLF---GESIGLVGAGGLVLGVIGLLLLEAPA 252 (407)
Q Consensus 192 ~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l---~e~~~~~~~~~~~l~~~Gv~l~~~~~ 252 (407)
..=++++...+.+. .++. +|+-.+.-.+-.++++.|..++...+
T Consensus 158 ---l~PGiSRSG~Ti~~--------------~l~~G~~r~~A~~fSFllsiP~ilga~~l~~~~ 204 (259)
T PF02673_consen 158 ---LIPGISRSGATITA--------------GLLLGLDREEAARFSFLLSIPAILGAGLLELKD 204 (259)
T ss_pred ---cCCCcChHHHHHHH--------------HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12344444332222 2333 34444445555667778887776655
No 127
>PRK11715 inner membrane protein; Provisional
Probab=62.22 E-value=1.7e+02 Score=29.09 Aligned_cols=47 Identities=13% Similarity=0.019 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHH
Q 015427 263 SGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVL 312 (407)
Q Consensus 263 ~G~l~~l~sa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (407)
.|+++..+ .|....++.-.-+.+.||.+........+...++.+++-
T Consensus 306 YgiLFI~L---TF~~fFlfE~~~~~~iHpiQYlLVGlAl~lFYLLLLSlS 352 (436)
T PRK11715 306 YAILFIAL---TFAAFFLFELLKKLRIHPVQYLLVGLALVLFYLLLLSLS 352 (436)
T ss_pred HHHHHHHH---HHHHHHHHHHhcCceecHHHHHHHHHHHHHHHHHHHHHH
Confidence 45544443 444444443333456789888777666666666555543
No 128
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=61.35 E-value=14 Score=28.54 Aligned_cols=57 Identities=28% Similarity=0.427 Sum_probs=44.2
Q ss_pred HHHHHHHhccCChhhHhhhhh-hhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Q 015427 345 YGVYFYSATKGSLTKLSSLTF-LTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLV 401 (407)
Q Consensus 345 ~~l~~~al~~~~~~~~s~~~~-~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~ 401 (407)
-.+|+.-+++.+-+.+.++.+ +...++.+.|..+-.|......++|..++++|+.+-
T Consensus 66 Saly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 66 SALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 346677788888777766654 788889999998655557778899999999998763
No 129
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=48.41 E-value=62 Score=21.70 Aligned_cols=44 Identities=30% Similarity=0.401 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 015427 233 VGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVS 286 (407)
Q Consensus 233 ~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~G~l~~l~sa~~~a~~~v~~r~~~ 286 (407)
...+|.++.++|++++..|+ .|.+..+++-...+...-..|+..
T Consensus 4 v~v~G~~lv~~Gii~~~lPG----------pG~l~i~~GL~iLa~ef~wArr~l 47 (53)
T PF09656_consen 4 VGVLGWVLVVAGIIMLPLPG----------PGLLVIFLGLAILATEFPWARRLL 47 (53)
T ss_pred hhhHHHHHHHHHHHhhcCCC----------CcHHHHHHHHHHHHHhhHHHHHHH
Confidence 35788999999999998886 366666677666776666666543
No 130
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=46.31 E-value=3.4e+02 Score=27.75 Aligned_cols=18 Identities=0% Similarity=-0.055 Sum_probs=10.7
Q ss_pred cCcCHHHHHHHHHHHHHH
Q 015427 140 PKAGTFFVAAFRLIPAGL 157 (407)
Q Consensus 140 ~~~~p~~~~~~r~~~~~l 157 (407)
+.++++.+..+-++.+..
T Consensus 99 ~~~~~~~Ll~~~fl~g~~ 116 (524)
T PF05977_consen 99 GLLSPWLLLILTFLLGIG 116 (524)
T ss_pred CcCCHHHHHHHHHHHHHH
Confidence 456676666665555554
No 131
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=46.19 E-value=3.7 Score=38.00 Aligned_cols=110 Identities=11% Similarity=0.040 Sum_probs=68.5
Q ss_pred HHHHHHHHhHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCC-------C--------CChhhHHHHHHHHHH
Q 015427 122 VSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKL-------P--------SGFNAWVSIFLFALV 186 (407)
Q Consensus 122 ~~~~~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~-------~--------~~~~~~~~~~~~g~~ 186 (407)
+++.++||+.....|++.++--..+...+-+.++.++...++...-... | ..+......+.-|++
T Consensus 2 ~itmlcwGSW~nt~kL~~r~gR~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGGvv 81 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAERRGRLPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGGVV 81 (336)
T ss_pred eeehhhhcChHHHHHHHHhcCCccceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhhHh
Confidence 5678999999999999876544445677888887776666554432111 1 122334444445554
Q ss_pred HHHHHHHHHHHHhhccchhhHHHH-hhcHHHHHHHHHHHHcCCcchHH
Q 015427 187 DASCFQGFLAQGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESIGLV 233 (407)
Q Consensus 187 ~~~~~~~~~~~al~~~~~s~a~~i-~~~~p~~~~lla~l~l~e~~~~~ 233 (407)
. .+++++..+++.....+.+-++ ..+.-++-+++- -++..|.++.
T Consensus 82 f-nlgNillq~aia~aGmSVafpvg~glalVlGv~~N-Yfld~~~n~a 127 (336)
T PF07168_consen 82 F-NLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLN-YFLDPKINRA 127 (336)
T ss_pred h-hhHHHHHHHHHHHhcceeeeeeecceEEEEeeeee-eeccCCCCCc
Confidence 4 4467788999999998888777 344444444444 3445565543
No 132
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=42.17 E-value=99 Score=24.22 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=19.3
Q ss_pred CcchHHHHHHHHHHHHHHHHhhc
Q 015427 228 ESIGLVGAGGLVLGVIGLLLLEA 250 (407)
Q Consensus 228 e~~~~~~~~~~~l~~~Gv~l~~~ 250 (407)
.|++..+-.|+.+.++|++++-.
T Consensus 6 ~KiN~~R~~al~lif~g~~vmy~ 28 (114)
T PF11023_consen 6 SKINKIRTFALSLIFIGMIVMYI 28 (114)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Confidence 47788899999999999888765
No 133
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=38.65 E-value=1.9e+02 Score=22.50 Aligned_cols=47 Identities=11% Similarity=0.025 Sum_probs=31.5
Q ss_pred cchhhHHHHh-hcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHh
Q 015427 202 TSAGLGSVII-DSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLL 248 (407)
Q Consensus 202 ~~~s~a~~i~-~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~ 248 (407)
.+..+--++. ..+-..-+.++.+++||++++....|.++.++++..+
T Consensus 59 ~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 59 FSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred cCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 3444444442 2233344566778999999999999988888877654
No 134
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=37.60 E-value=2.6e+02 Score=23.94 Aligned_cols=42 Identities=19% Similarity=0.200 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 015427 274 SMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHD 315 (407)
Q Consensus 274 ~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (407)
+-.......|+..+|.+-...-.+..+...+......++.+.
T Consensus 113 ~~~~~~~~~~~~~~R~~~i~ag~~v~l~~~~~~l~~~l~~~~ 154 (194)
T PF07698_consen 113 SGIVAIFSVRRIRSRSDIIKAGLLVGLVNALMILALGLIQGS 154 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333344556777777776666666666666666666655444
No 135
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=36.54 E-value=50 Score=26.81 Aligned_cols=44 Identities=16% Similarity=0.245 Sum_probs=25.3
Q ss_pred hccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Q 015427 200 QRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIG 244 (407)
Q Consensus 200 ~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~G 244 (407)
.......++++.+..|++..+++ .+++..+...+..+++.+++|
T Consensus 63 ~~~~~~~aa~l~Y~lPll~li~g-~~l~~~~~~~e~~~~l~~l~~ 106 (135)
T PF04246_consen 63 PESSLLKAAFLVYLLPLLALIAG-AVLGSYLGGSELWAILGGLLG 106 (135)
T ss_pred ccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 33445567777888888888877 344444444444444444433
No 136
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=34.15 E-value=2.9e+02 Score=23.34 Aligned_cols=61 Identities=16% Similarity=0.121 Sum_probs=40.0
Q ss_pred HHHcCCcchHHHHHHHH-------HHHHHHHHhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 015427 223 ALLFGESIGLVGAGGLV-------LGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKY 288 (407)
Q Consensus 223 ~l~l~e~~~~~~~~~~~-------l~~~Gv~l~~~~~~~~~~~~~~~~G~l~~l~sa~~~a~~~v~~r~~~~~ 288 (407)
.++.|..++..+.+|+. .++.|+.++...+ ..........++.++++|++..++...++++
T Consensus 90 m~v~KtsP~LYr~LGIfLPLITTNCaVLgvaLln~~~-----~~~f~qsv~~gf~a~lGfslvmvlfA~iRER 157 (193)
T COG4657 90 MVVRKTSPTLYRLLGIFLPLITTNCAVLGVALLNINE-----GHNFLQSVVYGFGAALGFSLVMVLFAAIRER 157 (193)
T ss_pred HHHHccCHHHHHHHHHhhhhHhhchHHHHHHHHHhhh-----hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHH
Confidence 33444445555555544 3567888886543 2234567889999999999999987666554
No 137
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=34.05 E-value=61 Score=30.32 Aligned_cols=29 Identities=7% Similarity=-0.042 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHhhcc
Q 015427 112 LGMLLEWAVLVSPFFFWGTAMVAMKEVLP 140 (407)
Q Consensus 112 ~~~~~~~l~~~~~~~~~~~~~~~~k~~~~ 140 (407)
.+...|+.+.+++.++++...+...++.+
T Consensus 215 ~~~~~Gl~i~~faG~c~slFSPafNlAtN 243 (336)
T PF07168_consen 215 SSTLIGLGIAFFAGLCFSLFSPAFNLATN 243 (336)
T ss_pred ccceeeehHHHHHhHHHHhcCchhhcccc
Confidence 44567888899999999998887766554
No 138
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=33.51 E-value=2.8e+02 Score=22.93 Aligned_cols=26 Identities=15% Similarity=-0.096 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcc
Q 015427 262 GSGEWWMLLAAQSMAVGTVMVRWVSK 287 (407)
Q Consensus 262 ~~G~l~~l~sa~~~a~~~v~~r~~~~ 287 (407)
....+..++++..|.-|...+||.++
T Consensus 120 i~~l~~~li~a~IwipYf~~S~RVK~ 145 (149)
T PF10754_consen 120 IRELLRSLIAAAIWIPYFLRSKRVKN 145 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhh
Confidence 46888999999999999999999865
No 139
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=33.35 E-value=3.2e+02 Score=23.66 Aligned_cols=158 Identities=16% Similarity=0.106 Sum_probs=73.7
Q ss_pred cCCcchHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHH
Q 015427 226 FGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLP 305 (407)
Q Consensus 226 l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~G~l~~l~sa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~ 305 (407)
++++-......|+++.++|+.++..|..+. .......|.. .+++++...++..-.|+.. +.+.... ....+.+.
T Consensus 15 l~~~w~~~l~~Gv~lii~Gl~~l~~P~~s~-~~l~~~vG~~-lli~Gi~~ii~af~~r~~~---~~W~lll-~Gil~i~~ 88 (185)
T COG3247 15 LKKPWWWVLLLGVLLIILGLLALFNPAIST-VALVYVVGIL-LLISGIIEIISAFGNRSDN---SFWPLLL-SGILSILL 88 (185)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHH-HHHHHHHHHHHHHHhcccc---cchHHHH-HHHHHHHH
Confidence 445556667889999999999998775221 1112224433 2333333444333333321 2232211 11111111
Q ss_pred HHHHHHHhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHhhhhhhhHHHHHHHHHHHhCCCCCH
Q 015427 306 LMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSP 385 (407)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~ 385 (407)
...... .+ .........++...++++++.........+..+ -.-.....=+++++.++++.-+|..-
T Consensus 89 gil~~~---~~-------~~~~~~l~~lia~~~i~~GI~ri~~~~~~~~~~---G~~w~ii~Gvl~ii~g~ill~~P~~~ 155 (185)
T COG3247 89 GILAGF---NP-------GLGALVLTYLIAIWFIASGILRIVVAFRLRSLP---GWWWMIISGVLGIIAGLILLFNPVAS 155 (185)
T ss_pred HHHHHH---hh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC---CcHHHHHHHHHHHHHHHHHHHccHhH
Confidence 111111 11 112233333444444445544444333333333 22233444567777888777765443
Q ss_pred ----HHHHHHHHHHHHHHHhc
Q 015427 386 ----LQLVGAAVTVVAIYLVN 402 (407)
Q Consensus 386 ----~~~iG~~lil~g~~l~~ 402 (407)
..++|+-+++.|...+.
T Consensus 156 ~~~l~~llGI~li~~G~~~i~ 176 (185)
T COG3247 156 AWILGLLLGIELIFQGIALIA 176 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777766543
No 140
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=32.52 E-value=6.8e+02 Score=27.18 Aligned_cols=18 Identities=17% Similarity=0.156 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhhcC
Q 015427 234 GAGGLVLGVIGLLLLEAP 251 (407)
Q Consensus 234 ~~~~~~l~~~Gv~l~~~~ 251 (407)
+-+|..+..+++.++..+
T Consensus 176 DGlAfpfv~LaL~ll~~~ 193 (810)
T TIGR00844 176 DGLAFPFVFLSMDLLLYP 193 (810)
T ss_pred cHHHHHHHHHHHHHHhcc
Confidence 456777777777776543
No 141
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=31.64 E-value=84 Score=25.90 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=18.3
Q ss_pred hhccchhhHHHHhhcHHHHHHHHHHHH
Q 015427 199 LQRTSAGLGSVIIDSQPLSVAVLAALL 225 (407)
Q Consensus 199 l~~~~~s~a~~i~~~~p~~~~lla~l~ 225 (407)
+.--++-.++.+.++.|++..+++.++
T Consensus 69 i~EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 69 IEEKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445566777888888888887544
No 142
>PF11361 DUF3159: Protein of unknown function (DUF3159); InterPro: IPR016566 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=30.91 E-value=3.2e+02 Score=23.71 Aligned_cols=72 Identities=18% Similarity=0.140 Sum_probs=41.5
Q ss_pred hHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHHHH
Q 015427 206 LGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGTVM 281 (407)
Q Consensus 206 ~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~G~l~~l~sa~~~a~~~v~ 281 (407)
..+++.+..-......-.+.-||++... ..|.+...++..+....+ + ..+.+..|++.....++.+.+..+.
T Consensus 28 ~~aliaA~~~a~~~~v~RL~r~~~~~~a-~~gl~gV~i~a~~A~~tG-~--A~~~Fl~gi~~n~~~~~~~l~S~lv 99 (187)
T PF11361_consen 28 TPALIAALAVAVVIVVWRLVRRESVQPA-LSGLFGVAISAAIAWRTG-S--AKDFFLPGIWTNAVYAVVFLVSVLV 99 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccHHH-HHHHHHHHHHHHHHHHHC-C--hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666677778888988854 666666666655555543 2 2233345555555555555554443
No 143
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=30.43 E-value=3.6e+02 Score=23.35 Aligned_cols=88 Identities=10% Similarity=-0.025 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCC-CChhhHHHHHHHHHHHHHHHHHHH
Q 015427 117 EWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLP-SGFNAWVSIFLFALVDASCFQGFL 195 (407)
Q Consensus 117 ~~l~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~ 195 (407)
+.+++-+-+++-|.+..+.+-+ ...+-..++..-...+..+...+.+..+.+.. -.+..+++.++....... -+.+.
T Consensus 101 sLl~lg~~aLlsgitaff~~nA-~~~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~K~~lv~~~sm~-lWi~v 178 (226)
T COG4858 101 SLLFLGAMALLSGITAFFQKNA-QVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTWKYLLVAVLSML-LWIAV 178 (226)
T ss_pred cHHHHHHHHHHHHHHHHHhcCC-cchhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHH-HHHHH
Confidence 3444555577778888887752 34444444433333333333333222222221 122334455554444434 33444
Q ss_pred HHHhhccchhh
Q 015427 196 AQGLQRTSAGL 206 (407)
Q Consensus 196 ~~al~~~~~s~ 206 (407)
+.+-..+|.+.
T Consensus 179 ~i~t~~lPtsl 189 (226)
T COG4858 179 MIATVFLPTSL 189 (226)
T ss_pred HHHHhhCCCcC
Confidence 55666666554
No 144
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=30.09 E-value=7.3e+02 Score=26.75 Aligned_cols=42 Identities=10% Similarity=0.147 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHH
Q 015427 268 MLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVI 309 (407)
Q Consensus 268 ~l~sa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (407)
.++.++......++.-.+.++.+.-.......+++++..+.+
T Consensus 601 ~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~ 642 (742)
T TIGR01299 601 NFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFL 642 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333444444444444433
No 145
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=29.77 E-value=93 Score=25.64 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=22.2
Q ss_pred HhccCChhhHhhhhhhhHHHHHHHHHHHhC
Q 015427 351 SATKGSLTKLSSLTFLTPMFASIFGFLYLG 380 (407)
Q Consensus 351 al~~~~~~~~s~~~~~~pv~a~i~~~~~~~ 380 (407)
++..-+....+.+.|+-|++.++.+.++++
T Consensus 68 Gi~EkslL~sA~LvYi~PL~~l~v~~~La~ 97 (150)
T COG3086 68 GIEEKSLLKSALLVYIFPLVGLFLGAILAQ 97 (150)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556778888888888888888777643
No 146
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=27.35 E-value=2.9e+02 Score=25.10 Aligned_cols=43 Identities=12% Similarity=-0.201 Sum_probs=28.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHH
Q 015427 261 WGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGG 303 (407)
Q Consensus 261 ~~~G~l~~l~sa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~ 303 (407)
...|.+++.+....||.=.-..|+..+..+...+-+..++...
T Consensus 126 ~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~mPf~Ls~a~f 168 (243)
T KOG1623|consen 126 SVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEYMPFPLSFALF 168 (243)
T ss_pred eeeehhhhhhhHHhhhccHHhhhhheecCceeeechHHHHHHH
Confidence 4579999999999998887777777665543333333333333
No 147
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=27.21 E-value=52 Score=25.91 Aligned_cols=39 Identities=26% Similarity=0.368 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHH
Q 015427 146 FVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFAL 185 (407)
Q Consensus 146 ~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 185 (407)
....+-.......++++|++++. ..++.+....+...++
T Consensus 64 favcI~l~~~s~~lLI~WYR~gd-l~Pkfr~li~~~~~~i 102 (118)
T PF10856_consen 64 FAVCILLICISAILLIFWYRQGD-LDPKFRYLIYYNCFSI 102 (118)
T ss_pred hHHHHHHHHHHHHhheeehhcCC-CChhHHHHHHHHHHHH
Confidence 34444444444555556655544 4444344444444333
No 148
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=26.50 E-value=3.9e+02 Score=22.52 Aligned_cols=60 Identities=13% Similarity=0.186 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhccCChhhHhhhhhhhHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHH
Q 015427 341 SAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGE-TFSPLQLVGAAVTVVAIYL 400 (407)
Q Consensus 341 ~~~~~~l~~~al~~~~~~~~s~~~~~~pv~a~i~~~~~~~e-~~~~~~~iG~~lil~g~~l 400 (407)
...++..|.+.-....+-....+..++-+....++.++|++ .+....+.+..+-++..++
T Consensus 61 ~iSa~lvW~~~~~~~~~~~~~~ly~~ql~ln~awspiff~l~~l~~a~i~~lll~~~vl~l 121 (161)
T COG3476 61 GISAYLVWEKGPGQGTSWLLMFLYLLQLILNFAWSPIFFGLRSLGAALIIILLLWIAVLVL 121 (161)
T ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHH
Confidence 44456666555444445556666669999999999999998 5777777776665544443
No 149
>PF04550 Phage_holin_2: Phage holin family 2 ; InterPro: IPR007633 This entry represents the Bacteriophage P2, GpY, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=26.23 E-value=2.8e+02 Score=20.74 Aligned_cols=63 Identities=24% Similarity=0.175 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCcchHHHHHHHHH------HHHHHHHhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 015427 217 SVAVLAALLFGESIGLVGAGGLVL------GVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSK 287 (407)
Q Consensus 217 ~~~lla~l~l~e~~~~~~~~~~~l------~~~Gv~l~~~~~~~~~~~~~~~~G~l~~l~sa~~~a~~~v~~r~~~~ 287 (407)
.+.+--.+.-+|+++++.++|=.+ ...|++++-.|+.+ .-.+.++.++++-+.|..+...+.+
T Consensus 17 lIalgk~L~s~Epit~RL~iGR~ilGs~~S~~Aga~Li~~Pdl~--------plAv~GlgsalGI~G~q~vE~~lrr 85 (89)
T PF04550_consen 17 LIALGKVLASNEPITLRLFIGRVILGSAVSVVAGAALIQFPDLP--------PLAVIGLGSALGIAGYQAVEAWLRR 85 (89)
T ss_pred HHHHHHHHccCCCCchhHHhHHHHHhhHHHHHHHHHHhcCCCCC--------HHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 334444455678998887654333 34556666656522 2356677777777777776555443
No 150
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=24.56 E-value=1.1e+02 Score=17.75 Aligned_cols=24 Identities=25% Similarity=0.151 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcccCC
Q 015427 383 FSPLQLVGAAVTVVAIYLVNFRGS 406 (407)
Q Consensus 383 ~~~~~~iG~~lil~g~~l~~~~~~ 406 (407)
-....++|.+++..+.++..++++
T Consensus 10 ~~~~~~~G~~l~~~~~~~~~~rk~ 33 (34)
T TIGR01167 10 NSLLLLLGLLLLGLGGLLLRKRKK 33 (34)
T ss_pred cHHHHHHHHHHHHHHHHHheeccc
Confidence 345567777565555555555443
No 151
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=24.10 E-value=82 Score=26.37 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=17.3
Q ss_pred HhhccchhhHHHHhhcHHHHHHHHHHH
Q 015427 198 GLQRTSAGLGSVIIDSQPLSVAVLAAL 224 (407)
Q Consensus 198 al~~~~~s~a~~i~~~~p~~~~lla~l 224 (407)
++..-.+-.++.+.|+.|++..+++.+
T Consensus 68 ~i~e~~llkaa~lvYllPLl~li~ga~ 94 (154)
T PRK10862 68 GIAEGSLLRSALLVYMTPLVGLFLGAA 94 (154)
T ss_pred ecchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556677777788887777643
No 152
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=24.06 E-value=4.9e+02 Score=22.74 Aligned_cols=23 Identities=4% Similarity=0.069 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Q 015427 263 SGEWWMLLAAQSMAVGTVMVRWV 285 (407)
Q Consensus 263 ~G~l~~l~sa~~~a~~~v~~r~~ 285 (407)
.+....++++++++++..+-||.
T Consensus 179 ~~~~~iiig~i~~~~~~~lkkk~ 201 (206)
T PF06570_consen 179 PPWVYIIIGVIAFALRFYLKKKY 201 (206)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777888999999988877775
No 153
>PRK11715 inner membrane protein; Provisional
Probab=23.70 E-value=7.4e+02 Score=24.72 Aligned_cols=16 Identities=13% Similarity=0.108 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 015427 233 VGAGGLVLGVIGLLLL 248 (407)
Q Consensus 233 ~~~~~~~l~~~Gv~l~ 248 (407)
.-+.+++.++-|+...
T Consensus 387 ~~~~~~L~~LYg~Ly~ 402 (436)
T PRK11715 387 LLFAAALAALYGVLYG 402 (436)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 154
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.32 E-value=1.2e+02 Score=26.19 Aligned_cols=18 Identities=22% Similarity=0.134 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhhcCC
Q 015427 235 AGGLVLGVIGLLLLEAPA 252 (407)
Q Consensus 235 ~~~~~l~~~Gv~l~~~~~ 252 (407)
++|+++++.|++.++...
T Consensus 13 ilgilli~~gI~~Lv~~~ 30 (191)
T PF04156_consen 13 ILGILLIASGIAALVLFI 30 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666666666655443
No 155
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.05 E-value=3.5e+02 Score=20.71 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHhhhhh-hhHH
Q 015427 291 PVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTF-LTPM 369 (407)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~-~~pv 369 (407)
+..+.....+++.=+..-+++...-......+...-...|. ++.+--.++--..-.+-+-.++++.-.++- ..-.
T Consensus 6 ~~~l~~vlLL~~SNvFMTFAWYghLk~~~~pl~~~i~~SWG----IA~fEY~LqvPaNRiG~~v~s~~QLK~mQEVItL~ 81 (116)
T COG3169 6 SVYLYPVLLLIGSNVFMTFAWYGHLKFTNKPLVIVILASWG----IAFFEYLLQVPANRIGHQVYSAAQLKTMQEVITLA 81 (116)
T ss_pred chHHHHHHHHHhhHHHHHHHHHHHHhccCCchhHHHHHHhh----HHHHHHHHhCccchhhhhhccHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccc
Q 015427 370 FASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFR 404 (407)
Q Consensus 370 ~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~~ 404 (407)
+=..++.+.++|++.+..+.|..+++.|+.++-+.
T Consensus 82 iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr~ 116 (116)
T COG3169 82 IFVPFSVFYLKEPLRWNYLWAFLLILGAVYFIFRG 116 (116)
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHhccC
No 156
>PRK10263 DNA translocase FtsK; Provisional
Probab=22.91 E-value=1.2e+03 Score=26.96 Aligned_cols=147 Identities=12% Similarity=-0.089 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCChhhHHH----HHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhcHHHHHHHHHH
Q 015427 148 AAFRLIPAGLLLITFASSQGRKLPSGFNAWVS----IFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAA 223 (407)
Q Consensus 148 ~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~ 223 (407)
..+-.++...+++.+.+..-....+.+..... -=+.|.+|..+..+++ ....+..++.|++..+.++
T Consensus 25 ~~gIlLlllAlfL~lALiSYsPsDPSwS~sa~~~~V~Nl~GiVGA~LAD~L~---------~LFGl~AYLLP~LL~~~a~ 95 (1355)
T PRK10263 25 ALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLF---------FIFGVMAYTIPVIIVGGCW 95 (1355)
T ss_pred HHHHHHHHHHHHHHHHHHhCCccCCcccccCcccccccccchHHHHHHHHHH---------HHHhHHHHHHHHHHHHHHH
Q ss_pred HHcCCcch---------HHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcccCChHHH
Q 015427 224 LLFGESIG---------LVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMA 294 (407)
Q Consensus 224 l~l~e~~~---------~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~G~l~~l~sa~~~a~~~v~~r~~~~~~~~~~~ 294 (407)
++++.+.. ..+++|+++.+.+...+..-........ .-.+.+++.++..+.+.+ .......+
T Consensus 96 ~l~R~r~~~~~l~~~~l~lRliGlLLLLLas~gLaa~~~~d~~~~--------~gGGIIG~lLs~lL~~Lf-G~vGa~LI 166 (1355)
T PRK10263 96 FAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYF--------ASGGVIGSLLSTTLQPLL-HSSGGTIA 166 (1355)
T ss_pred HHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccc--------cccchHHHHHHHHHHHHH-hHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 015427 295 TGWHMVIGGLPLMVISVL 312 (407)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~ 312 (407)
+....+++.++.+-+.++
T Consensus 167 LLlllLIGLiLlTglSwl 184 (1355)
T PRK10263 167 LLCVWAAGLTLFTGWSWV 184 (1355)
T ss_pred HHHHHHHHHHHHHhhHHH
No 157
>PF09529 Intg_mem_TP0381: Integral membrane protein (intg_mem_TP0381); InterPro: IPR011737 This entry represents a family of hydrophobic proteins with seven predicted transmembrane alpha helices. Members are found in Bacillus subtilis (ywaF), TP0381 from Treponema pallidum (TP0381), Streptococcus pyogenes, Rhodococcus erythropolis, etc.
Probab=22.57 E-value=5.4e+02 Score=22.70 Aligned_cols=109 Identities=8% Similarity=-0.190 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCCCCCCC-
Q 015427 179 SIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESN- 257 (407)
Q Consensus 179 ~~~~~g~~~~~~~~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~- 257 (407)
+.+....+...+....++....+.+..+.-++.-+.-......-.++.| +-...+.....-..+|+.-+..|+.+.-+
T Consensus 42 ~~~~~~~l~~~i~~~~~~~~~~~~~~~e~LPLhlC~i~~~~~~l~l~~k-~~~~~~~~~~~gi~Gai~Ali~Pd~~~~~~ 120 (225)
T PF09529_consen 42 KILAIILLLQEIILYIWYIYIGYFSLWESLPLHLCRIAMILAALALITK-KKKLFEYFYFWGIIGAIQALITPDLSYYGF 120 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhccCCchhhhHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHHHeeeccCcCCCC
Confidence 3333333333444445555667677777667755443333333223333 34455666655455566566667652222
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 015427 258 SSLWGSGEWWMLLAAQSMAVGTVMVRWVSKY 288 (407)
Q Consensus 258 ~~~~~~G~l~~l~sa~~~a~~~v~~r~~~~~ 288 (407)
......-....=...+..+++.+..++.+-+
T Consensus 121 ~h~~~~~f~i~H~~li~~~~~~~~~~~~~p~ 151 (225)
T PF09529_consen 121 PHFTFIQFFISHGLLILAPLYLLFVEKYRPT 151 (225)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 2222233344444455556666666655433
No 158
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.87 E-value=4.2e+02 Score=25.52 Aligned_cols=79 Identities=11% Similarity=0.206 Sum_probs=37.5
Q ss_pred HHhHHHHHHhhccCcCHHHHHHHHHHHHHHHH-----HHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015427 128 WGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLL-----ITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLAQGLQRT 202 (407)
Q Consensus 128 ~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~ 202 (407)
|+.+..+.|.+.+++.-.......++++.++. +.+++..+.+...+.... ..+.+-++ +.++.|.+.++.
T Consensus 201 Ws~slY~i~ql~~nLq~Iwieyr~yvLgYvlivgliSfaVCYK~GPp~d~RS~~i-lmWtLqli----~lvl~Yfsvq~p 275 (452)
T KOG3817|consen 201 WSISLYVIKQLADNLQLIWIEYRDYVLGYVLIVGLISFAVCYKIGPPKDPRSQTI-LMWTLQLI----GLVLAYFSVQHP 275 (452)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcchhhH-HHHHHHHH----HHHHHHHhcccH
Confidence 55555555665555554444444555444332 334444333322221222 22222222 334667788887
Q ss_pred chhhHHHHh
Q 015427 203 SAGLGSVII 211 (407)
Q Consensus 203 ~~s~a~~i~ 211 (407)
.++.|.+|.
T Consensus 276 ~~a~A~iI~ 284 (452)
T KOG3817|consen 276 SAAIAAIIM 284 (452)
T ss_pred HHHHHHHHH
Confidence 777765553
No 159
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=21.26 E-value=6.5e+02 Score=23.19 Aligned_cols=106 Identities=8% Similarity=0.104 Sum_probs=60.9
Q ss_pred HHHHHHHhHHHHHHhhcc--CcCHHHHHHHHHHHHHHHHHHHHHHhC--CCCC--C---ChhhHHHHHHHHHHHHHHHHH
Q 015427 123 SPFFFWGTAMVAMKEVLP--KAGTFFVAAFRLIPAGLLLITFASSQG--RKLP--S---GFNAWVSIFLFALVDASCFQG 193 (407)
Q Consensus 123 ~~~~~~~~~~~~~k~~~~--~~~p~~~~~~r~~~~~l~~~~~~~~~~--~~~~--~---~~~~~~~~~~~g~~~~~~~~~ 193 (407)
...++|++.+.+..+... ++.|.....+-......+...++..++ ++.+ . ..|+|..-.+++. + -++
T Consensus 101 ~ll~lyAlinAl~~l~dGGR~v~~~~ai~yt~~s~~~Ca~~~~~~~r~nrr~~s~lIald~kqW~Mst~lS~---a-l~V 176 (314)
T COG3965 101 ALLCLYALINALGSLLDGGREVEPGHAIAYTLVSVTGCAAIAWKLRRLNRRLKSPLIALDTKQWLMSTCLSA---A-LFV 176 (314)
T ss_pred HHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHHHHHH---H-HHH
Confidence 335667777766655433 466666666666655555555555444 2221 1 2244433322222 2 223
Q ss_pred HHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchH
Q 015427 194 FLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGL 232 (407)
Q Consensus 194 ~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~ 232 (407)
.+..+........+...-+.-|+..++.+.++..-++..
T Consensus 177 aF~~a~~l~~T~~a~l~~Y~DPmvlaL~~~v~IplPlg~ 215 (314)
T COG3965 177 AFAAAWLLAGTKFAHLVVYADPMVLALVCLVFIPLPLGT 215 (314)
T ss_pred HHHHHHHhccCchhhhhcccCHHHHHHHHHheeeccHHH
Confidence 444455555556788888999999999998887655443
No 160
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=20.84 E-value=4.4e+02 Score=21.04 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=13.1
Q ss_pred HHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCc
Q 015427 194 FLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGES 229 (407)
Q Consensus 194 ~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~ 229 (407)
.+...+++++--.++ .++..+.. .+++||
T Consensus 84 ~y~~~~~~lGf~~at------~~~~~~~~-~~~g~r 112 (141)
T PF07331_consen 84 LYVLLLEYLGFIIAT------FLFLFAFM-LLLGER 112 (141)
T ss_pred HHHHHHHHhhHHHHH------HHHHHHHH-HHhCCC
Confidence 444455544433333 33444444 455665
No 161
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=20.56 E-value=1.8e+02 Score=17.78 Aligned_cols=21 Identities=24% Similarity=-0.210 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 015427 262 GSGEWWMLLAAQSMAVGTVMV 282 (407)
Q Consensus 262 ~~G~l~~l~sa~~~a~~~v~~ 282 (407)
..-+++-++.+.+|++|++.-
T Consensus 5 lliVl~Pil~A~~Wa~fNIg~ 25 (36)
T CHL00196 5 LLVIAAPVLAAASWALFNIGR 25 (36)
T ss_pred HHHHHHHHHHHHHHHHHHhHH
Confidence 345678889999999999863
No 162
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=20.03 E-value=8.7e+02 Score=24.17 Aligned_cols=16 Identities=6% Similarity=-0.180 Sum_probs=7.9
Q ss_pred CcCHHHHHHHHHHHHH
Q 015427 141 KAGTFFVAAFRLIPAG 156 (407)
Q Consensus 141 ~~~p~~~~~~r~~~~~ 156 (407)
.++|.+-..+-...+.
T Consensus 322 ~iHpiQY~LVGlAl~l 337 (430)
T PF06123_consen 322 RIHPIQYLLVGLALVL 337 (430)
T ss_pred cccHHHHHHHHHHHHH
Confidence 4556555554444433
No 163
>TIGR02206 intg_mem_TP0381 conserved hypothetical integral membrane protein TIGR02206. This model represents a family of hydrophobic proteins with seven predicted transmembrane alpha helices. Members are found in Bacillus subtilis (ywaF), TP0381 from Treponema pallidum (TP0381), Streptococcus pyogenes, Rhodococcus erythropolis, etc.
Probab=20.01 E-value=6.3e+02 Score=22.48 Aligned_cols=112 Identities=5% Similarity=-0.203 Sum_probs=55.5
Q ss_pred HHHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCCCCCCC-cchhhhHHHHHHH
Q 015427 192 QGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESN-SSLWGSGEWWMLL 270 (407)
Q Consensus 192 ~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~-~~~~~~G~l~~l~ 270 (407)
...++..-..-+..+.-++.-+.-......- .+..++-...+.....-..+++.-+..|+.+.-+ ...........=.
T Consensus 52 ~~~w~~~~~~~~~~e~LPLhlC~ia~~~~~~-~l~~~~~~~~~~~~~~gi~Ga~~Ali~Pd~~~y~fph~~~~~ffi~H~ 130 (222)
T TIGR02206 52 LMLWYVLLGGFTLDESLPLHLCDIAIILAAI-MLITKRRWFFQLTYFWGIGGSFQALLTPDLYPYGFPHVAFISFFIGHY 130 (222)
T ss_pred HHHHHHhcCCCchhhcCChhhccHHHHHHHH-HHHcCcHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcHHHHHHHHHHH
Confidence 3455555555666666666554433333222 3334444555555555555555666667653222 1222234444445
Q ss_pred HHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHH
Q 015427 271 AAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGL 304 (407)
Q Consensus 271 sa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~ 304 (407)
..+..+++.+..++.+.+......+......-++
T Consensus 131 ~l~~~~l~~~~~~~~rp~~~~~~~~~~~~~~~~~ 164 (222)
T TIGR02206 131 FLLLAALYLILIFRERPTLRGLKVAVLFALILAI 164 (222)
T ss_pred HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHH
Confidence 5556666666666655554444443333333333
Done!