Query 015427
Match_columns 407
No_of_seqs 312 out of 2179
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 12:26:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015427.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015427hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.9 3E-09 1E-13 86.1 8.1 70 336-405 35-105 (137)
2 3b5d_A Multidrug transporter E 98.8 7.7E-08 2.6E-12 75.1 13.4 102 117-252 3-105 (110)
3 3b5d_A Multidrug transporter E 98.8 9.8E-08 3.3E-12 74.5 13.8 70 336-405 35-105 (110)
4 2i68_A Protein EMRE; transmemb 98.7 2.7E-08 9.3E-13 80.5 8.0 71 182-252 34-105 (137)
5 3rko_J NADH-quinone oxidoreduc 10.4 6.8E+02 0.023 20.4 13.2 35 372-406 127-163 (184)
6 3arc_T Photosystem II reaction 10.1 2.8E+02 0.0094 15.6 3.2 10 223-232 20-29 (32)
7 2lsj_B DNA polymerase kappa; R 10.9 83 0.0028 16.7 0.0 18 22-39 5-22 (26)
8 4dve_A Biotin transporter BIOY 7.6 9.2E+02 0.031 19.8 8.8 66 211-277 48-114 (198)
9 4dx5_A Acriflavine resistance 7.5 1.3E+03 0.043 24.4 9.1 47 349-395 889-935 (1057)
10 2l2t_A Receptor tyrosine-prote 6.9 3.4E+02 0.012 16.5 2.4 13 393-405 25-37 (44)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.91 E-value=3e-09 Score=86.11 Aligned_cols=70 Identities=9% Similarity=0.173 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHhccCChhhHhhh-hhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccC
Q 015427 336 TSIFGSAISYGVYFYSATKGSLTKLSSL-TFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 405 (407)
Q Consensus 336 ~g~~~~~~~~~l~~~al~~~~~~~~s~~-~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~~~ 405 (407)
+++++++++|.++.+++++.+++++.++ ..+.|++++++++++|||++++.+++|+++|++|++++++.+
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 5677889999999999999999999999 899999999999999999999999999999999999987644
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.83 E-value=7.7e-08 Score=75.12 Aligned_cols=102 Identities=17% Similarity=0.116 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 015427 117 EWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQGFLA 196 (407)
Q Consensus 117 ~~l~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 196 (407)
.+++++++.++........|... +.. + .+ ..+.+++...+++.++.
T Consensus 3 ~~l~l~~a~~~e~~~~~~lK~s~-~~~-------------------------------~-~~-~~~~~~~~~~~~~~~~~ 48 (110)
T 3b5d_A 3 PYIYLGGAILAEVIGTTLMKFSE-GFT-------------------------------R-LW-PSVGTIICYCASFWLLA 48 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-Ccc-------------------------------h-HH-HHHHHHHHHHHHHHHHH
Confidence 46777788888888888888742 110 1 11 22455556677888999
Q ss_pred HHhhccchhhHHHH-hhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCC
Q 015427 197 QGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (407)
Q Consensus 197 ~al~~~~~s~a~~i-~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~ 252 (407)
+++++.|.+.+..+ ..+.|+++.+++++++||+++..+++|+.+++.|++++...+
T Consensus 49 ~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 49 QTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999998 899999999999999999999999999999999999997653
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.83 E-value=9.8e-08 Score=74.52 Aligned_cols=70 Identities=9% Similarity=0.173 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHhccCChhhHhhh-hhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccC
Q 015427 336 TSIFGSAISYGVYFYSATKGSLTKLSSL-TFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG 405 (407)
Q Consensus 336 ~g~~~~~~~~~l~~~al~~~~~~~~s~~-~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil~g~~l~~~~~ 405 (407)
.++++.++++.++.+++|+.+.+++.++ ..+.|+++.+.++++|||+++..+++|.++|++|+++++..+
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 5567788899999999999999999998 899999999999999999999999999999999999998754
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.73 E-value=2.7e-08 Score=80.50 Aligned_cols=71 Identities=20% Similarity=0.253 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhhHHHH-hhcHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHhhcCC
Q 015427 182 LFALVDASCFQGFLAQGLQRTSAGLGSVI-IDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLLLEAPA 252 (407)
Q Consensus 182 ~~g~~~~~~~~~~~~~al~~~~~s~a~~i-~~~~p~~~~lla~l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~ 252 (407)
+.+++...+++.++.+++++.+++.+..+ .++.|+++++++++++||+++..+++|+.++++|++++...+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 45566677788899999999999999999 899999999999999999999999999999999999997654
No 5
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=10.38 E-value=6.8e+02 Score=20.40 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=27.1
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHH--HHHHHHhcccCC
Q 015427 372 SIFGFLYLGETFSPLQLVGAAVT--VVAIYLVNFRGS 406 (407)
Q Consensus 372 ~i~~~~~~~e~~~~~~~iG~~li--l~g~~l~~~~~~ 406 (407)
--+|..++++-.-+.++.+..+. +.|.+.+.++++
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLarr~~ 163 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREER 163 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 36788899999999999998774 467777776654
No 6
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=10.10 E-value=2.8e+02 Score=15.64 Aligned_cols=10 Identities=30% Similarity=0.547 Sum_probs=6.5
Q ss_pred HHHcCCcchH
Q 015427 223 ALLFGESIGL 232 (407)
Q Consensus 223 ~l~l~e~~~~ 232 (407)
.++++|++..
T Consensus 20 AI~FRePPri 29 (32)
T 3arc_T 20 AIFFREPPRI 29 (32)
T ss_dssp HHHTSCCCCC
T ss_pred hhhhcCCCCC
Confidence 3677887653
No 7
>2lsj_B DNA polymerase kappa; REV1, RIR, POL kappa, translesion synthesis, TLS, CTD, prote binding-protein binding complex; HET: DNA; NMR {Mus musculus}
Probab=10.86 E-value=83 Score=16.67 Aligned_cols=18 Identities=22% Similarity=0.121 Sum_probs=10.1
Q ss_pred cccccccccccccccccC
Q 015427 22 SLSSYSNKKLSSNHVAHA 39 (407)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~ 39 (407)
+-.+|.+|||+.....++
T Consensus 5 ~K~SFFdKKRser~~n~q 22 (26)
T 2lsj_B 5 HKKSFFDKKRSERISNCQ 22 (26)
Confidence 334566777766554443
No 8
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=7.60 E-value=9.2e+02 Score=19.83 Aligned_cols=66 Identities=20% Similarity=0.113 Sum_probs=34.4
Q ss_pred hhcHHHHHHHHHHHHcCCcch-HHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhHHHHHHHHHHHHHH
Q 015427 211 IDSQPLSVAVLAALLFGESIG-LVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAAQSMAV 277 (407)
Q Consensus 211 ~~~~p~~~~lla~l~l~e~~~-~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~G~l~~l~sa~~~a~ 277 (407)
..++.+.+.+.+ .+++.|.. ....+-++++.+|+=+.+.....-........|++++..-+.....
T Consensus 48 iTlQtl~V~LaG-~~LG~r~G~lsv~lYlllG~~GlPVFagg~gG~~~l~gPTgGYLiGF~~aA~v~G 114 (198)
T 4dve_A 48 IILQNMGIMMAG-GLLGPKYGTISVGAFLALALIGLPVLTGGNGGAASFLGPSGGYRIAWLFTPFLIG 114 (198)
T ss_dssp BCSTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTCCCBTTTBCCSGGGGSTTHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHH-HHHChhHHHHHHHHHHHHHHHcCccccCCCCchhHHhcchhHHHHHHHHHHHHHH
Confidence 345666666666 55555444 4456666777777655543321111111233677777766544433
No 9
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=7.46 E-value=1.3e+03 Score=24.40 Aligned_cols=47 Identities=15% Similarity=0.024 Sum_probs=29.9
Q ss_pred HHHhccCChhhHhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 015427 349 FYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTV 395 (407)
Q Consensus 349 ~~al~~~~~~~~s~~~~~~pv~a~i~~~~~~~e~~~~~~~iG~~lil 395 (407)
...++........++...--+...+.+..++|.+++...++|.++++
T Consensus 889 ~~~f~s~~~~l~~l~~i~~~~~~~~~~l~~~g~~l~~~~~~g~i~l~ 935 (1057)
T 4dx5_A 889 AALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTI 935 (1057)
T ss_dssp HHHHTCSSTHHHHHTTHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHH
Confidence 33444444444444444444555666777899999999999877643
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=6.93 E-value=3.4e+02 Score=16.53 Aligned_cols=13 Identities=8% Similarity=-0.000 Sum_probs=5.6
Q ss_pred HHHHHHHHhcccC
Q 015427 393 VTVVAIYLVNFRG 405 (407)
Q Consensus 393 lil~g~~l~~~~~ 405 (407)
++.++.+++.+++
T Consensus 25 ii~~~~~~~~RRR 37 (44)
T 2l2t_A 25 IVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhh
Confidence 3444444444443
Done!