Query 015427
Match_columns 407
No_of_seqs 312 out of 2179
Neff 9.3
Searched_HMMs 13730
Date Mon Mar 25 12:26:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015427.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015427hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 11.7 93 0.0068 15.0 2.9 18 263-280 3-20 (27)
2 d1xioa_ f.13.1.1 (A:) Sensory 8.0 4.2E+02 0.031 20.1 16.2 16 211-226 77-92 (226)
3 d2axtt1 f.23.34.1 (T:1-30) Pho 6.6 1.7E+02 0.013 14.3 3.3 15 370-384 14-28 (30)
4 d1q90a3 f.23.23.1 (A:248-292) 4.2 2.4E+02 0.018 15.7 1.9 28 261-288 4-31 (45)
5 g6rlx.1 g.1.1.1 (B:,A:) Relaxi 3.9 79 0.0058 18.0 -0.4 8 2-9 25-32 (51)
6 d2axtl1 f.23.31.1 (L:1-37) Pho 3.8 3.3E+02 0.024 14.2 3.0 19 114-132 17-35 (37)
7 d1u7ga_ f.44.1.1 (A:) Ammonium 3.2 1.1E+03 0.08 19.3 22.0 73 224-303 248-321 (383)
8 d2r6gf1 e.70.1.1 (F:13-260) Ma 3.0 9.8E+02 0.072 18.3 7.7 54 179-237 4-57 (248)
9 d1wpga4 f.33.1.1 (A:1-124,A:24 2.5 1.4E+03 0.1 18.8 19.2 61 141-201 264-336 (472)
10 d1rh5b_ f.23.28.1 (B:) Preprot 2.5 6.2E+02 0.045 14.7 3.2 19 263-281 30-48 (56)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.66 E-value=93 Score=14.99 Aligned_cols=18 Identities=17% Similarity=-0.032 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 015427 263 SGEWWMLLAAQSMAVGTV 280 (407)
Q Consensus 263 ~G~l~~l~sa~~~a~~~v 280 (407)
.|.+.+-++++.|+.|.-
T Consensus 3 lgli~~tl~glf~aayqq 20 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 577777888888887753
No 2
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=7.99 E-value=4.2e+02 Score=20.07 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=11.0
Q ss_pred hhcHHHHHHHHHHHHc
Q 015427 211 IDSQPLSVAVLAALLF 226 (407)
Q Consensus 211 ~~~~p~~~~lla~l~l 226 (407)
.-+.|+....+..+..
T Consensus 77 ~lTtPlll~~l~l~~~ 92 (226)
T d1xioa_ 77 MVTTPLLLLSLSWTAM 92 (226)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHcccHHHHHHHHHHH
Confidence 3467888888876553
No 3
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.56 E-value=1.7e+02 Score=14.25 Aligned_cols=15 Identities=20% Similarity=0.233 Sum_probs=7.8
Q ss_pred HHHHHHHHHhCCCCC
Q 015427 370 FASIFGFLYLGETFS 384 (407)
Q Consensus 370 ~a~i~~~~~~~e~~~ 384 (407)
.+.++-.++|+|++.
T Consensus 14 i~lfffaiffreppr 28 (30)
T d2axtt1 14 IALFFFAIFFREPPR 28 (30)
T ss_dssp HHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHhcCCCC
Confidence 344444455666653
No 4
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.22 E-value=2.4e+02 Score=15.67 Aligned_cols=28 Identities=11% Similarity=-0.168 Sum_probs=18.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 015427 261 WGSGEWWMLLAAQSMAVGTVMVRWVSKY 288 (407)
Q Consensus 261 ~~~G~l~~l~sa~~~a~~~v~~r~~~~~ 288 (407)
+..|.+..+.+.+..-+..|+-|+-.++
T Consensus 4 Rv~gll~F~~~v~laQi~LVLKKKQfEK 31 (45)
T d1q90a3 4 RIQGLLVFFSFVLLTQVLLVLKKKQFEK 31 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777776664444
No 5
>g6rlx.1 g.1.1.1 (B:,A:) Relaxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.91 E-value=79 Score=18.03 Aligned_cols=8 Identities=38% Similarity=0.514 Sum_probs=1.7
Q ss_pred cccccccc
Q 015427 2 AWWSSASA 9 (407)
Q Consensus 2 ~~~~~~~~ 9 (407)
.||+++++
T Consensus 25 s~w~~~~~ 32 (51)
T g6rlx.1 25 STWELYSA 32 (51)
T ss_dssp SCC-----
T ss_pred chhccchh
Confidence 46655443
No 6
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.83 E-value=3.3e+02 Score=14.15 Aligned_cols=19 Identities=5% Similarity=0.244 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHhHH
Q 015427 114 MLLEWAVLVSPFFFWGTAM 132 (407)
Q Consensus 114 ~~~~~l~~~~~~~~~~~~~ 132 (407)
-.+|.++.+..+++++..+
T Consensus 17 Ly~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 17 LYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4567777777777776654
No 7
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=3.24 E-value=1.1e+03 Score=19.26 Aligned_cols=73 Identities=21% Similarity=0.182 Sum_probs=31.3
Q ss_pred HHcCCcchHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhHHHHHHHHH-HHHHHHHHHHHhhcccCChHHHHHHHHHHH
Q 015427 224 LLFGESIGLVGAGGLVLGVIGLLLLEAPAFDESNSSLWGSGEWWMLLAA-QSMAVGTVMVRWVSKYSDPVMATGWHMVIG 302 (407)
Q Consensus 224 l~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~G~l~~l~sa-~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~ 302 (407)
.+.++|.+.....-- ++.|.+-++-.. +... .....+.+++++ +++-.+..+.+|. +-.|+..........+
T Consensus 248 ~~~~~k~~~~~~~nG--~LaGLVaita~~---~~v~-p~~A~~iG~i~g~i~~~~~~~l~~~~-~iDD~~~~~~vHg~~G 320 (383)
T d1u7ga_ 248 WALRGLPSLLGACSG--AIAGLVGVTPAC---GYIG-VGGALIIGVVAGLAGLWGVTMLKRLL-RVDDPCDVFGVHGVCG 320 (383)
T ss_dssp HHHHSSCCHHHHHHH--HHHHHHHHTTTT---TTSC-HHHHHHHHHHHHHHHHHHHHHHHHHH-CSCCGGGHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHH--hhhhhhhcccCc---cccc-hhhHHHHHhhccHHHHHHHHHHHhhc-ccccccceEeehhhhH
Confidence 345566766654432 244555554321 1111 222344444444 3344444444444 3345554444444433
Q ss_pred H
Q 015427 303 G 303 (407)
Q Consensus 303 ~ 303 (407)
.
T Consensus 321 i 321 (383)
T d1u7ga_ 321 I 321 (383)
T ss_dssp H
T ss_pred H
Confidence 3
No 8
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=3.04 E-value=9.8e+02 Score=18.28 Aligned_cols=54 Identities=2% Similarity=-0.210 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhhHHHHhhcHHHHHHHHHHHHcCCcchHHHHHH
Q 015427 179 SIFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGG 237 (407)
Q Consensus 179 ~~~~~g~~~~~~~~~~~~~al~~~~~s~a~~i~~~~p~~~~lla~l~l~e~~~~~~~~~ 237 (407)
+++++|++.....+ +....+..-.-..+. ..-+.+.++.++++.+|.-+.+++.
T Consensus 4 K~~ll~l~~a~~~~-~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~kyi~ 57 (248)
T d2r6gf1 4 KWSVLGLLGLLVGY-LVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRYVY 57 (248)
T ss_dssp THHHHHHHHHHHHH-THHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccceehhh
Confidence 34555555544333 333444444433333 3344556666777877777777654
No 9
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=2.48 E-value=1.4e+03 Score=18.84 Aligned_cols=61 Identities=8% Similarity=-0.114 Sum_probs=32.8
Q ss_pred CcCHHHHHHHHHHHHHHHHHHHHHH-------hCCCC-----CCChhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015427 141 KAGTFFVAAFRLIPAGLLLITFASS-------QGRKL-----PSGFNAWVSIFLFALVDASCFQGFLAQGLQR 201 (407)
Q Consensus 141 ~~~p~~~~~~r~~~~~l~~~~~~~~-------~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~ 201 (407)
.+.|.+++++.++.-.+..+.+..- +++++ ..+++.+...+..|..........+++.+.+
T Consensus 264 pl~~~qILwinli~d~lpaiaL~~ep~d~~iM~~~Pr~~~~~li~~~~~~~i~~~g~~~~~~~~~~~~~~~~~ 336 (472)
T d1wpga4 264 ALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGYVGAATVGAAAWWFMY 336 (472)
T ss_dssp SCCHHHHHHHHHTTTHHHHHHHTTCCCCSGGGGSCCCCTTCCSSCTHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccHHHHHHHHHHhHHHHHHHHhcCCCchhhhcCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4669999998888776655544321 11111 1233445555555555544444555555544
No 10
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=2.47 E-value=6.2e+02 Score=14.68 Aligned_cols=19 Identities=11% Similarity=-0.060 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 015427 263 SGEWWMLLAAQSMAVGTVM 281 (407)
Q Consensus 263 ~G~l~~l~sa~~~a~~~v~ 281 (407)
.|..+.+++.++|.++.+.
T Consensus 30 ~~iG~~i~G~IGf~I~li~ 48 (56)
T d1rh5b_ 30 TALGISLLGIIGYIIHVPA 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555666666777666553
Done!