BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015428
         (407 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
           Destruction Motif Binding And Lysine Specificity On The
           Scfbeta-Trcp1 Ubiquitin Ligase
          Length = 435

 Score = 31.6 bits (70), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 20/35 (57%)

Query: 70  DVTMEHVLPFLPAKSLCRFKAVSKEWNRWISSPFL 104
           D   E++L +L AKSLC  + V KEW R  S   L
Sbjct: 20  DHIAENILSYLDAKSLCAAELVCKEWYRVTSDGML 54


>pdb|1IZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase 1 Mutant
           Enzyme W398v
          Length = 637

 Score = 28.5 bits (62), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 10/14 (71%), Positives = 11/14 (78%)

Query: 43  TSDAHPWFAKYANF 56
           T D+HPWF KY NF
Sbjct: 268 TGDSHPWFDKYNNF 281


>pdb|1IZJ|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase 1 Mutant
           Enzyme F313a
          Length = 637

 Score = 28.5 bits (62), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 10/14 (71%), Positives = 11/14 (78%)

Query: 43  TSDAHPWFAKYANF 56
           T D+HPWF KY NF
Sbjct: 268 TGDSHPWFDKYNNF 281


>pdb|1UH2|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-AmylaseMALTO-Hexaose
           Complex
 pdb|1UH4|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase 1MALTO-
           Tridecaose Complex
 pdb|2D0G|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
           Alpha- Amylase 1 (Tvai) Mutant D356nE396Q COMPLEXED WITH
           P5, A Pullulan Model Oligosaccharide
 pdb|2D0H|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
           Alpha- Amylase 1 (Tvai) Mutant D356nE396Q COMPLEXED WITH
           P2, A Pullulan Model Oligosaccharide
          Length = 637

 Score = 28.5 bits (62), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 10/14 (71%), Positives = 11/14 (78%)

Query: 43  TSDAHPWFAKYANF 56
           T D+HPWF KY NF
Sbjct: 268 TGDSHPWFDKYNNF 281


>pdb|1JI1|A Chain A, Crystal Structure Analysis Of Thermoactinomyces Vulgaris
           R- 47 Alpha-amylase 1
 pdb|1JI1|B Chain B, Crystal Structure Analysis Of Thermoactinomyces Vulgaris
           R- 47 Alpha-amylase 1
 pdb|1UH3|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-AmylaseACARBOSE
           Complex
          Length = 637

 Score = 28.5 bits (62), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 10/14 (71%), Positives = 11/14 (78%)

Query: 43  TSDAHPWFAKYANF 56
           T D+HPWF KY NF
Sbjct: 268 TGDSHPWFDKYNNF 281


>pdb|2D0F|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
           Alpha- Amylase 1 (Tvai) Mutant D356n Complexed With P2,
           A Pullulan Model Oligosaccharide
          Length = 637

 Score = 28.5 bits (62), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 10/14 (71%), Positives = 11/14 (78%)

Query: 43  TSDAHPWFAKYANF 56
           T D+HPWF KY NF
Sbjct: 268 TGDSHPWFDKYNNF 281


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.140    0.446 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,260,186
Number of Sequences: 62578
Number of extensions: 510996
Number of successful extensions: 812
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 806
Number of HSP's gapped (non-prelim): 6
length of query: 407
length of database: 14,973,337
effective HSP length: 101
effective length of query: 306
effective length of database: 8,652,959
effective search space: 2647805454
effective search space used: 2647805454
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)