Query 015428
Match_columns 407
No_of_seqs 191 out of 1712
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 06:13:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015428.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015428hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 1.8E-30 3.8E-35 236.5 23.1 211 154-379 1-230 (230)
2 PF08268 FBA_3: F-box associat 99.4 3.2E-12 6.8E-17 105.3 11.6 103 262-365 1-118 (129)
3 PLN03215 ascorbic acid mannose 99.4 2.6E-10 5.5E-15 108.4 24.0 318 63-402 2-372 (373)
4 PF07734 FBA_1: F-box associat 99.3 9.8E-11 2.1E-15 100.6 16.4 137 262-401 1-164 (164)
5 PHA02713 hypothetical protein; 99.1 3.5E-08 7.6E-13 101.1 23.0 211 153-388 298-544 (557)
6 PHA03098 kelch-like protein; P 98.8 6.7E-07 1.5E-11 91.7 23.1 207 156-387 292-521 (534)
7 KOG4441 Proteins containing BT 98.8 3.1E-07 6.7E-12 94.0 20.2 209 152-386 326-555 (571)
8 PHA02713 hypothetical protein; 98.8 9.4E-07 2E-11 90.6 21.6 192 173-388 273-500 (557)
9 PF12937 F-box-like: F-box-lik 98.8 4.4E-09 9.5E-14 70.1 2.6 42 65-106 1-42 (47)
10 KOG4441 Proteins containing BT 98.7 7.8E-07 1.7E-11 91.1 19.5 192 172-387 301-509 (571)
11 PHA02790 Kelch-like protein; P 98.7 2.1E-06 4.6E-11 86.6 21.3 195 157-384 270-477 (480)
12 PLN02153 epithiospecifier prot 98.7 1.3E-05 2.8E-10 77.4 24.7 152 154-315 28-201 (341)
13 PHA02790 Kelch-like protein; P 98.6 3.3E-06 7.1E-11 85.2 18.2 143 153-316 313-455 (480)
14 TIGR03548 mutarot_permut cycli 98.5 5.3E-05 1.1E-09 72.5 23.8 128 173-316 40-180 (323)
15 smart00256 FBOX A Receptor for 98.5 4.4E-08 9.5E-13 63.1 1.7 39 68-106 1-39 (41)
16 TIGR03547 muta_rot_YjhT mutatr 98.5 8.5E-05 1.8E-09 71.8 24.5 147 154-316 13-209 (346)
17 PF00646 F-box: F-box domain; 98.4 2.5E-08 5.3E-13 66.8 -0.9 42 65-106 3-44 (48)
18 PHA03098 kelch-like protein; P 98.4 2.3E-05 5E-10 80.4 20.1 150 153-317 337-497 (534)
19 PLN02193 nitrile-specifier pro 98.4 6.3E-05 1.4E-09 75.8 22.4 200 172-388 193-421 (470)
20 TIGR03548 mutarot_permut cycli 98.3 3.8E-05 8.3E-10 73.5 17.3 151 153-316 118-312 (323)
21 PLN02193 nitrile-specifier pro 98.3 0.00035 7.7E-09 70.4 24.9 197 173-387 138-361 (470)
22 PRK14131 N-acetylneuraminic ac 98.2 0.00028 6E-09 69.1 21.3 148 154-316 34-230 (376)
23 PLN02153 epithiospecifier prot 98.1 0.00067 1.5E-08 65.4 21.2 100 216-316 34-146 (341)
24 PRK14131 N-acetylneuraminic ac 97.9 0.0034 7.3E-08 61.4 22.9 150 153-316 79-288 (376)
25 TIGR03547 muta_rot_YjhT mutatr 97.8 0.0013 2.8E-08 63.6 17.5 135 172-317 168-331 (346)
26 KOG4693 Uncharacterized conser 97.6 0.0049 1.1E-07 55.4 16.2 211 170-390 42-289 (392)
27 KOG2120 SCF ubiquitin ligase, 97.4 0.00011 2.3E-09 67.2 3.0 77 30-106 61-139 (419)
28 KOG0379 Kelch repeat-containin 96.5 0.32 7E-06 49.2 18.9 200 173-388 89-312 (482)
29 KOG1230 Protein containing rep 95.9 0.53 1.1E-05 45.3 15.6 204 172-387 98-350 (521)
30 KOG0379 Kelch repeat-containin 95.6 0.65 1.4E-05 47.0 16.7 134 172-316 139-284 (482)
31 KOG4693 Uncharacterized conser 95.6 0.61 1.3E-05 42.3 14.1 179 126-315 104-310 (392)
32 KOG0281 Beta-TrCP (transducin 95.4 0.0068 1.5E-07 56.3 1.5 41 66-106 76-120 (499)
33 COG4257 Vgb Streptogramin lyas 93.7 1 2.2E-05 41.2 11.0 125 151-298 192-319 (353)
34 PF07893 DUF1668: Protein of u 93.5 2.3 5E-05 41.0 14.0 129 151-297 69-223 (342)
35 PF07893 DUF1668: Protein of u 93.5 3.2 6.9E-05 40.0 14.9 119 266-387 76-217 (342)
36 KOG2997 F-box protein FBX9 [Ge 93.0 0.028 6.1E-07 51.9 -0.0 43 65-107 107-154 (366)
37 KOG4152 Host cell transcriptio 92.8 1.6 3.5E-05 43.2 11.6 93 172-274 57-154 (830)
38 PF13964 Kelch_6: Kelch motif 92.8 0.34 7.4E-06 32.0 5.1 39 154-192 7-48 (50)
39 PF13360 PQQ_2: PQQ-like domai 91.8 9.1 0.0002 34.1 19.5 187 157-383 35-236 (238)
40 KOG1230 Protein containing rep 91.2 16 0.00034 35.7 17.5 84 231-316 98-196 (521)
41 PF13964 Kelch_6: Kelch motif 90.7 0.4 8.7E-06 31.7 3.7 36 216-251 13-48 (50)
42 smart00612 Kelch Kelch domain. 90.6 0.81 1.8E-05 29.2 5.1 22 229-250 13-34 (47)
43 PF01344 Kelch_1: Kelch motif; 89.8 0.57 1.2E-05 30.3 3.8 33 216-248 13-45 (47)
44 PF08450 SGL: SMP-30/Gluconola 89.2 17 0.00036 32.9 21.2 202 155-387 8-223 (246)
45 PF07762 DUF1618: Protein of u 88.3 2.3 4.9E-05 34.6 7.2 66 276-341 6-99 (131)
46 PF01344 Kelch_1: Kelch motif; 87.1 1.4 3E-05 28.5 4.3 33 260-292 5-44 (47)
47 COG3055 Uncharacterized protei 86.0 30 0.00066 33.1 13.8 83 231-316 113-237 (381)
48 PF02191 OLF: Olfactomedin-lik 85.1 31 0.00066 31.6 14.1 122 259-386 71-212 (250)
49 PF07646 Kelch_2: Kelch motif; 84.9 2.7 5.9E-05 27.5 4.9 35 260-294 5-48 (49)
50 KOG0316 Conserved WD40 repeat- 83.5 34 0.00074 30.9 13.0 114 156-298 26-145 (307)
51 PRK11138 outer membrane biogen 82.7 50 0.0011 32.3 18.3 108 259-384 249-360 (394)
52 PF13418 Kelch_4: Galactose ox 81.3 1.8 3.9E-05 28.3 2.9 33 216-248 14-46 (49)
53 PF07646 Kelch_2: Kelch motif; 81.2 2.6 5.5E-05 27.6 3.6 33 216-248 13-47 (49)
54 KOG0274 Cdc4 and related F-box 80.9 0.89 1.9E-05 46.5 1.8 85 22-106 60-149 (537)
55 KOG4341 F-box protein containi 80.5 0.85 1.8E-05 44.2 1.4 38 64-102 72-109 (483)
56 PF13570 PQQ_3: PQQ-like domai 80.0 3 6.4E-05 26.0 3.4 27 259-285 14-40 (40)
57 KOG2321 WD40 repeat protein [G 79.9 14 0.0003 37.4 9.5 119 266-389 145-270 (703)
58 PRK11138 outer membrane biogen 79.9 37 0.00079 33.2 12.9 109 260-383 63-184 (394)
59 TIGR03074 PQQ_membr_DH membran 77.2 31 0.00067 37.1 11.9 32 259-290 187-220 (764)
60 PF13418 Kelch_4: Galactose ox 75.8 6.8 0.00015 25.4 4.4 20 172-191 29-48 (49)
61 COG2706 3-carboxymuconate cycl 71.9 95 0.0021 29.7 27.1 166 200-386 148-332 (346)
62 smart00564 PQQ beta-propeller 71.5 9.8 0.00021 22.1 4.0 24 263-286 3-26 (33)
63 PF02897 Peptidase_S9_N: Proly 70.4 1.1E+02 0.0024 29.9 21.9 156 213-385 238-412 (414)
64 COG4946 Uncharacterized protei 68.5 61 0.0013 32.3 10.5 98 276-385 287-398 (668)
65 TIGR03075 PQQ_enz_alc_DH PQQ-d 68.4 74 0.0016 32.7 12.0 117 259-384 62-196 (527)
66 PF13360 PQQ_2: PQQ-like domai 67.9 86 0.0019 27.6 17.2 139 232-385 4-148 (238)
67 PF13415 Kelch_3: Galactose ox 67.5 11 0.00023 24.6 3.8 22 229-250 17-38 (49)
68 TIGR03300 assembly_YfgL outer 65.4 1.2E+02 0.0026 29.2 12.5 106 260-382 59-168 (377)
69 smart00612 Kelch Kelch domain. 64.7 11 0.00024 23.6 3.5 23 172-194 15-37 (47)
70 PF10282 Lactonase: Lactonase, 63.8 1.4E+02 0.003 28.6 22.2 119 266-387 154-287 (345)
71 KOG4152 Host cell transcriptio 62.1 1.2E+02 0.0025 30.7 11.1 100 212-316 213-341 (830)
72 COG1520 FOG: WD40-like repeat 61.8 1.6E+02 0.0034 28.5 13.4 139 231-384 35-178 (370)
73 smart00284 OLF Olfactomedin-li 61.2 1.4E+02 0.0029 27.5 14.2 122 259-386 76-217 (255)
74 cd00216 PQQ_DH Dehydrogenases 60.7 1E+02 0.0022 31.2 11.3 32 259-290 54-87 (488)
75 PF13415 Kelch_3: Galactose ox 59.2 12 0.00025 24.4 2.8 23 172-194 19-41 (49)
76 PLN02772 guanylate kinase 58.2 55 0.0012 32.1 8.3 67 260-326 28-107 (398)
77 KOG0310 Conserved WD40 repeat- 54.2 2.4E+02 0.0052 28.2 11.9 89 177-285 7-99 (487)
78 PF08450 SGL: SMP-30/Gluconola 50.5 1.9E+02 0.004 25.9 13.7 51 262-315 5-59 (246)
79 KOG2502 Tub family proteins [G 49.7 11 0.00024 35.7 2.0 39 63-101 43-89 (355)
80 PF12768 Rax2: Cortical protei 49.1 1.2E+02 0.0026 28.3 8.8 64 229-293 14-81 (281)
81 PF13013 F-box-like_2: F-box-l 48.9 14 0.0003 29.1 2.2 30 64-93 21-50 (109)
82 TIGR01640 F_box_assoc_1 F-box 46.7 2.1E+02 0.0045 25.3 11.7 32 264-296 3-34 (230)
83 TIGR03300 assembly_YfgL outer 45.7 2.8E+02 0.0061 26.6 19.3 56 232-289 156-215 (377)
84 KOG0640 mRNA cleavage stimulat 44.0 2.9E+02 0.0062 26.2 10.1 174 200-396 220-402 (430)
85 cd01207 Ena-Vasp Enabled-VASP- 43.2 1.5E+02 0.0033 23.4 7.1 43 172-221 9-51 (111)
86 PF01011 PQQ: PQQ enzyme repea 40.3 39 0.00085 20.6 2.9 24 267-290 1-26 (38)
87 cd01206 Homer Homer type EVH1 38.4 99 0.0022 24.3 5.3 41 171-221 10-51 (111)
88 KOG1310 WD40 repeat protein [G 36.3 2.7E+02 0.0059 28.5 9.2 113 156-285 59-179 (758)
89 PF15408 PH_7: Pleckstrin homo 36.2 16 0.00034 27.1 0.6 25 82-106 76-100 (104)
90 PF12768 Rax2: Cortical protei 35.1 3.8E+02 0.0082 25.0 10.3 107 172-293 16-130 (281)
91 cd00216 PQQ_DH Dehydrogenases 33.0 1.8E+02 0.0039 29.5 7.9 57 261-318 401-459 (488)
92 PF03088 Str_synth: Strictosid 32.0 73 0.0016 24.0 3.7 16 276-291 37-52 (89)
93 PF07250 Glyoxal_oxid_N: Glyox 31.7 3.9E+02 0.0084 24.4 9.0 127 158-295 77-207 (243)
94 KOG2055 WD40 repeat protein [G 31.0 5.6E+02 0.012 25.7 12.7 114 260-385 262-382 (514)
95 KOG2321 WD40 repeat protein [G 30.9 4.9E+02 0.011 26.9 10.0 29 154-186 183-211 (703)
96 PRK13259 regulatory protein Sp 30.8 37 0.00079 25.9 1.8 38 149-186 32-70 (94)
97 KOG4649 PQQ (pyrrolo-quinoline 29.8 4.6E+02 0.01 24.3 9.6 59 269-327 26-92 (354)
98 PF11483 DUF3209: Protein of u 29.4 19 0.00041 28.4 0.1 21 8-28 62-82 (123)
99 PRK05137 tolB translocation pr 28.1 5.9E+02 0.013 25.1 20.3 185 170-387 224-422 (435)
100 COG4946 Uncharacterized protei 26.6 66 0.0014 32.1 3.2 30 358-387 276-305 (668)
101 COG4257 Vgb Streptogramin lyas 26.3 5.5E+02 0.012 24.1 11.7 140 152-315 66-207 (353)
102 TIGR03032 conserved hypothetic 25.9 2.8E+02 0.0061 26.4 7.1 55 258-316 204-260 (335)
103 TIGR03075 PQQ_enz_alc_DH PQQ-d 25.6 6.5E+02 0.014 25.8 10.5 78 232-316 442-523 (527)
104 KOG2048 WD40 repeat protein [G 25.4 8.1E+02 0.018 25.8 16.6 171 154-341 390-564 (691)
105 PF00568 WH1: WH1 domain; Int 25.1 2.8E+02 0.0061 21.6 6.2 39 172-221 16-55 (111)
106 PF14157 YmzC: YmzC-like prote 23.0 1.1E+02 0.0025 21.3 2.9 18 369-386 41-58 (63)
107 KOG4649 PQQ (pyrrolo-quinoline 22.6 6.3E+02 0.014 23.5 12.3 49 266-314 147-205 (354)
108 PF11012 DUF2850: Protein of u 22.5 2.3E+02 0.0051 20.8 4.7 46 241-286 4-51 (79)
109 PF10282 Lactonase: Lactonase, 21.8 7E+02 0.015 23.7 24.6 168 198-386 145-333 (345)
110 PF07370 DUF1489: Protein of u 21.6 72 0.0016 26.1 2.1 25 261-285 42-71 (137)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=99.97 E-value=1.8e-30 Score=236.51 Aligned_cols=211 Identities=21% Similarity=0.348 Sum_probs=153.7
Q ss_pred EeecCceEEEeeecccCCeEEEEEcCcccceeecCCCCcCC--CCcceEEEEecCCCCCCCCCeEEEEEEeccCCCcceE
Q 015428 154 RTTCNGLVCCQSVFEVGNFFYYICNPVTKEWHVLPQPKFFH--GPETAVALVFEPSALGFSAHYEVVCAVPVDQNDVSII 231 (407)
Q Consensus 154 ~~s~~GLll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~--~~~~~~~l~~d~~~~~~~~~ykVv~~~~~~~~~~~~~ 231 (407)
++|||||||+... ..++||||+||+++.||+++... ......++|||+. +++||||++..... +....
T Consensus 1 ~~sCnGLlc~~~~-----~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~----~~~YKVv~~~~~~~-~~~~~ 70 (230)
T TIGR01640 1 VVPCDGLICFSYG-----KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPI----EKQYKVLCFSDRSG-NRNQS 70 (230)
T ss_pred CcccceEEEEecC-----CcEEEECCCCCCEEecCCCCCcccccccceEEEeeccc----CCcEEEEEEEeecC-CCCCc
Confidence 4799999998642 67999999999999999875421 1112578999997 89999999986431 22456
Q ss_pred EEEEEeCCCCcccccCCCCCCCcccccccceEEECCEEEEEecCC------cEEEEEcCCCeEe-eEeCCCCCC---CCc
Q 015428 232 FFEIYSSRSRSWRTTDTICSEPDVLKLSINGFYMKGFVYWTSLSG------AILVFDLKDEQYG-ILPLPARSG---PYG 301 (407)
Q Consensus 232 ~~~vy~s~t~~W~~~~~~~~~~~~~~~~~~~v~~~G~lYwl~~~~------~Il~fD~~~e~~~-~i~lP~~~~---~~~ 301 (407)
.++||++++++||.+...+ +. .. ....+|++||.+||++... .|++||+.+|+|+ .+++|.... ...
T Consensus 71 ~~~Vys~~~~~Wr~~~~~~-~~-~~-~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~ 147 (230)
T TIGR01640 71 EHQVYTLGSNSWRTIECSP-PH-HP-LKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYL 147 (230)
T ss_pred cEEEEEeCCCCccccccCC-CC-cc-ccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccce
Confidence 8999999999999987432 11 11 2234999999999997521 6999999999999 599987543 235
Q ss_pred cEEEecCeEEEEeeeC---CCceEEEEEcCCccceeeEeeeeecccccCcCCcceEEEe-ecCCEEEEecC--CE-EEEE
Q 015428 302 ALTQMHGELCYMLPQI---QDGECLIGVYGNLDMSLKCVIPVEHEVLGETFSDCRVLTC-VNSDILIILLP--NK-VIAY 374 (407)
Q Consensus 302 ~l~~~~G~L~~v~~~~---~~~~w~l~~~~~~~W~~~~~i~l~~~~~~~~~~~~~~~~~-~~g~~lll~~~--~~-l~~y 374 (407)
.|++++|+||++.... ..++|+|++++..+|+...+|.++. ..+ ......++.+ .+|++++.... .. +++|
T Consensus 148 ~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~-~~~-~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y 225 (230)
T TIGR01640 148 SLINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPP-LPD-LVDDNFLSGFTDKGEIVLCCEDENPFYIFYY 225 (230)
T ss_pred EEEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcc-hhh-hhhheeEeEEeeCCEEEEEeCCCCceEEEEE
Confidence 7999999999998753 2689999988887888766666421 111 1112346656 45666665543 34 9999
Q ss_pred ECCCC
Q 015428 375 HVKAQ 379 (407)
Q Consensus 375 d~~t~ 379 (407)
|++++
T Consensus 226 ~~~~~ 230 (230)
T TIGR01640 226 NVGEN 230 (230)
T ss_pred eccCC
Confidence 99875
No 2
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.40 E-value=3.2e-12 Score=105.35 Aligned_cols=103 Identities=21% Similarity=0.345 Sum_probs=74.7
Q ss_pred eEEECCEEEEEecC-----CcEEEEEcCCCeEeeEeCCC--C-CCCCccEEEecCeEEEEeeeCC-----CceEEEEEcC
Q 015428 262 GFYMKGFVYWTSLS-----GAILVFDLKDEQYGILPLPA--R-SGPYGALTQMHGELCYMLPQIQ-----DGECLIGVYG 328 (407)
Q Consensus 262 ~v~~~G~lYwl~~~-----~~Il~fD~~~e~~~~i~lP~--~-~~~~~~l~~~~G~L~~v~~~~~-----~~~w~l~~~~ 328 (407)
++++||++||++.. ..|++||+++|+|+.|++|. . ......|.+++|+|+++..... .++|.|++++
T Consensus 1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 58999999999764 78999999999999999982 1 2245689999999999987642 5899999998
Q ss_pred CccceeeEeeeeecccccCcC-CcceEEEe-ecCCEEEE
Q 015428 329 NLDMSLKCVIPVEHEVLGETF-SDCRVLTC-VNSDILII 365 (407)
Q Consensus 329 ~~~W~~~~~i~l~~~~~~~~~-~~~~~~~~-~~g~~lll 365 (407)
...|+.++ +.++....+... .....+++ .+|++|+.
T Consensus 81 k~~Wsk~~-~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 81 KQEWSKKH-IVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred cceEEEEE-EECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 88998554 445432222111 12334444 46777776
No 3
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.37 E-value=2.6e-10 Score=108.40 Aligned_cols=318 Identities=10% Similarity=0.043 Sum_probs=154.8
Q ss_pred ccCCCCchHHHHHhcCCCC-chhhhhhhcccHhhhhhhcCCcccccccccCCCceeeE-eecCCCCCeeEeecCCCCCCC
Q 015428 63 KKNIGLSDVTMEHVLPFLP-AKSLCRFKAVSKEWNRWISSPFLAHLQTTHFKDISGLI-CQSPGSDPSFISFNQDAYGIP 140 (407)
Q Consensus 63 ~~~~~Lpd~lle~IL~rLP-~~sl~r~r~VCK~Wr~li~sp~F~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~ 140 (407)
..|++||+||++.|..||| ..+++|||+|||+||+.+.... +. .+.+....++ .......+ +...+.. ..
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~ 73 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---KK-NPFRTRPLILFNPINPSET-LTDDRSY---IS 73 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---cc-CCcccccccccCcccCCCC-ccccccc---cc
Confidence 4799999999999999998 6799999999999999886421 00 0001111111 11000000 0000000 00
Q ss_pred CCCcccCCCC-ceE---EeecCceEEEeeecccCCeEEEEEcCcccceeecCCCCcCC-C-----CcceEEE-EecCCCC
Q 015428 141 SPSFNFFPQL-VNI---RTTCNGLVCCQSVFEVGNFFYYICNPVTKEWHVLPQPKFFH-G-----PETAVAL-VFEPSAL 209 (407)
Q Consensus 141 ~~~~~~~~~~-~~i---~~s~~GLll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~-~-----~~~~~~l-~~d~~~~ 209 (407)
.+...+.+.. +.+ .++..|+|.-.... ...+.+.+.||+++....+|+-...- . ....+.+ +.+..
T Consensus 74 ~~~~~ls~~~~~r~~~~~~~~~~WLik~~~~-~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~~~~~~-- 150 (373)
T PLN03215 74 RPGAFLSRAAFFRVTLSSSPSKGWLIKSDMD-VNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVLDWAKR-- 150 (373)
T ss_pred cccceeeeeEEEEeecCCCCCCCcEEEEecc-ccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEEecccc--
Confidence 0000000000 111 13567887764321 24577889999999988777522110 0 0011111 11111
Q ss_pred CCC-CCe--EEEEEEeccCCCc-ceEEEEEEeC------CCCcccccCCCCCCCcccccccceEEECCEEEEEecCCcEE
Q 015428 210 GFS-AHY--EVVCAVPVDQNDV-SIIFFEIYSS------RSRSWRTTDTICSEPDVLKLSINGFYMKGFVYWTSLSGAIL 279 (407)
Q Consensus 210 ~~~-~~y--kVv~~~~~~~~~~-~~~~~~vy~s------~t~~W~~~~~~~~~~~~~~~~~~~v~~~G~lYwl~~~~~Il 279 (407)
+++ ..| ++|.. ...++. ....+-|+.. ..++|+.++.... .-..-++.+|.+|-+...+.+.
T Consensus 151 ~~~~~~~~~~~~~~--~~~~~~~~~~vl~i~~~g~l~~w~~~~Wt~l~~~~~------~~~DIi~~kGkfYAvD~~G~l~ 222 (373)
T PLN03215 151 RETRPGYQRSALVK--VKEGDNHRDGVLGIGRDGKINYWDGNVLKALKQMGY------HFSDIIVHKGQTYALDSIGIVY 222 (373)
T ss_pred cccccceeEEEEEE--eecCCCcceEEEEEeecCcEeeecCCeeeEccCCCc------eeeEEEEECCEEEEEcCCCeEE
Confidence 000 113 22221 111111 1112222211 1377887753211 1246799999999997778899
Q ss_pred EEEcCCCeEeeEeCCC-------CCCCCccEEEecCeEEEEeeeCCC-------------ceEEEEEc----CCccceee
Q 015428 280 VFDLKDEQYGILPLPA-------RSGPYGALTQMHGELCYMLPQIQD-------------GECLIGVY----GNLDMSLK 335 (407)
Q Consensus 280 ~fD~~~e~~~~i~lP~-------~~~~~~~l~~~~G~L~~v~~~~~~-------------~~w~l~~~----~~~~W~~~ 335 (407)
++|..-+ .+.+..+. .......|+|+.|+|.+|...... ..+.++.+ +...|...
T Consensus 223 ~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV 301 (373)
T PLN03215 223 WINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEV 301 (373)
T ss_pred EEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEe
Confidence 9885321 12221111 112345799999999999764211 12223222 22445433
Q ss_pred Eeeeeec--ccccCcCCcceEE-Ee--ecCCEEEEecCCEEEEEECCCCeEEEecccCc-CCcceeEeccccc
Q 015428 336 CVIPVEH--EVLGETFSDCRVL-TC--VNSDILIILLPNKVIAYHVKAQKMQVVSETGT-EGFQNCLPYINSL 402 (407)
Q Consensus 336 ~~i~l~~--~~~~~~~~~~~~~-~~--~~g~~lll~~~~~l~~yd~~t~~~~~l~~~~~-~~~~~~~~y~~sl 402 (407)
-+|.. -++|.......+. .+ ..++.|++..+.....||++.++..-+...-. .....+..|+||+
T Consensus 302 --~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFtdd~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~ 372 (373)
T PLN03215 302 --KTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFTEDTMPKVFKLDNGNGSSIETTISESSQSSFEMFVPSF 372 (373)
T ss_pred --cccCCeEEEEECCccEEEecCCCCCccCCEEEEECCCcceEEECCCCCccceEeecCccccchheeecccc
Confidence 33332 1233211100000 01 25788999888888899999999555433211 1122335566665
No 4
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.32 E-value=9.8e-11 Score=100.64 Aligned_cols=137 Identities=20% Similarity=0.275 Sum_probs=87.0
Q ss_pred eEEECCEEEEEecC----C--cEEEEEcCCCeE-eeEeCCCCCC---CCccEEE-ecCeEEEEeeeC---CCceEEEEEc
Q 015428 262 GFYMKGFVYWTSLS----G--AILVFDLKDEQY-GILPLPARSG---PYGALTQ-MHGELCYMLPQI---QDGECLIGVY 327 (407)
Q Consensus 262 ~v~~~G~lYwl~~~----~--~Il~fD~~~e~~-~~i~lP~~~~---~~~~l~~-~~G~L~~v~~~~---~~~~w~l~~~ 327 (407)
+|++||.+||++.. . .|++||+.+|+| ..+++|.... ....|++ .+|+||++.... ..++|+|.++
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~ 80 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKY 80 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeee
Confidence 58999999999862 1 699999999999 8899998765 2235544 478999997543 3689999977
Q ss_pred CC--ccceeeEeeeeecccccCcCCcc-e-EEEeec-CCEEEEec---C----CEEEEEECCCCeEEEecccCc-CCcce
Q 015428 328 GN--LDMSLKCVIPVEHEVLGETFSDC-R-VLTCVN-SDILIILL---P----NKVIAYHVKAQKMQVVSETGT-EGFQN 394 (407)
Q Consensus 328 ~~--~~W~~~~~i~l~~~~~~~~~~~~-~-~~~~~~-g~~lll~~---~----~~l~~yd~~t~~~~~l~~~~~-~~~~~ 394 (407)
+. ..|....+|.+.. ........ . .+.+.. +++++... + ..++.|+ +.+.++++..... .....
T Consensus 81 ~~~~~SWtK~~~i~~~~--~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~~~~~~~~~~ 157 (164)
T PF07734_consen 81 GYGKESWTKLFTIDLPP--LPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDIEDKSSCWPS 157 (164)
T ss_pred ccCcceEEEEEEEecCC--CCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEcccccCCCCCCC
Confidence 63 4455544444322 11111111 1 222333 34444321 1 3577888 8888888875322 34556
Q ss_pred eEecccc
Q 015428 395 CLPYINS 401 (407)
Q Consensus 395 ~~~y~~s 401 (407)
+..|+||
T Consensus 158 ~~~YvpS 164 (164)
T PF07734_consen 158 ICNYVPS 164 (164)
T ss_pred EEEECCC
Confidence 7889987
No 5
>PHA02713 hypothetical protein; Provisional
Probab=99.06 E-value=3.5e-08 Score=101.07 Aligned_cols=211 Identities=9% Similarity=0.048 Sum_probs=130.4
Q ss_pred EEeecCceEEEeeecc---cCCeEEEEEcCcccceeecCCCCcCCCCcceEEEEecCCCCCCCCCeEEEEEEeccCCCcc
Q 015428 153 IRTTCNGLVCCQSVFE---VGNFFYYICNPVTKEWHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAVPVDQNDVS 229 (407)
Q Consensus 153 i~~s~~GLll~~~~~~---~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~~~~~ykVv~~~~~~~~~~~ 229 (407)
-++..+|.|.+.++.. .....++.+||.+++|..+|+.+..+.. ..+..++ + +|.++++... ...
T Consensus 298 ~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~--~~~~~~~-------g--~IYviGG~~~-~~~ 365 (557)
T PHA02713 298 ASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCR--FSLAVID-------D--TIYAIGGQNG-TNV 365 (557)
T ss_pred EEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhc--eeEEEEC-------C--EEEEECCcCC-CCC
Confidence 3455677777766531 1125688999999999999987754321 1222222 1 5666665421 122
Q ss_pred eEEEEEEeCCCCcccccCCCCCCCcccccccceEEECCEEEEEecC------------------------CcEEEEEcCC
Q 015428 230 IIFFEIYSSRSRSWRTTDTICSEPDVLKLSINGFYMKGFVYWTSLS------------------------GAILVFDLKD 285 (407)
Q Consensus 230 ~~~~~vy~s~t~~W~~~~~~~~~~~~~~~~~~~v~~~G~lYwl~~~------------------------~~Il~fD~~~ 285 (407)
...++.||+.++.|+.++..+.+. .....+.++|.+|.++.. ..+.+||+.+
T Consensus 366 ~~sve~Ydp~~~~W~~~~~mp~~r----~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~t 441 (557)
T PHA02713 366 ERTIECYTMGDDKWKMLPDMPIAL----SSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVN 441 (557)
T ss_pred CceEEEEECCCCeEEECCCCCccc----ccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCC
Confidence 347999999999999988654432 223577889999998742 2588999999
Q ss_pred CeEeeEe-CCCCCCCCccEEEecCeEEEEeeeCCCc--eEEEEEcCC---ccceeeEeeeeecccccCcCCcceEEEeec
Q 015428 286 EQYGILP-LPARSGPYGALTQMHGELCYMLPQIQDG--ECLIGVYGN---LDMSLKCVIPVEHEVLGETFSDCRVLTCVN 359 (407)
Q Consensus 286 e~~~~i~-lP~~~~~~~~l~~~~G~L~~v~~~~~~~--~w~l~~~~~---~~W~~~~~i~l~~~~~~~~~~~~~~~~~~~ 359 (407)
++|+.++ +|.. .....++..+|+|+++....... .=.++.|+. +.|.... .|+... ....++..+
T Consensus 442 d~W~~v~~m~~~-r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~--~m~~~r------~~~~~~~~~ 512 (557)
T PHA02713 442 NIWETLPNFWTG-TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT--TTESRL------SALHTILHD 512 (557)
T ss_pred CeEeecCCCCcc-cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc--ccCccc------ccceeEEEC
Confidence 9998874 2222 23457889999999997643211 112455553 3565433 332111 112223344
Q ss_pred CCEEEEecC---CEEEEEECCCCeEEEecccC
Q 015428 360 SDILIILLP---NKVIAYHVKAQKMQVVSETG 388 (407)
Q Consensus 360 g~~lll~~~---~~l~~yd~~t~~~~~l~~~~ 388 (407)
|.+.++... ..+-.||+.|++|..++...
T Consensus 513 ~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~ 544 (557)
T PHA02713 513 NTIMMLHCYESYMLQDTFNVYTYEWNHICHQH 544 (557)
T ss_pred CEEEEEeeecceeehhhcCcccccccchhhhc
Confidence 443333221 25889999999999998654
No 6
>PHA03098 kelch-like protein; Provisional
Probab=98.84 E-value=6.7e-07 Score=91.68 Aligned_cols=207 Identities=13% Similarity=0.133 Sum_probs=122.8
Q ss_pred ecCceEEEeeeccc---CCeEEEEEcCcccceeecCCCCcCCCCcceEEEEecCCCCCCCCCeEEEEEEeccCCCcceEE
Q 015428 156 TCNGLVCCQSVFEV---GNFFYYICNPVTKEWHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAVPVDQNDVSIIF 232 (407)
Q Consensus 156 s~~GLll~~~~~~~---~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~~~~~ykVv~~~~~~~~~~~~~~ 232 (407)
..+|.+.+.++... ....++.+||.|++|..+|+.+..+... .+...+ + +|.++++.. +......
T Consensus 292 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~--~~~~~~-------~--~lyv~GG~~-~~~~~~~ 359 (534)
T PHA03098 292 VLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP--GVTVFN-------N--RIYVIGGIY-NSISLNT 359 (534)
T ss_pred EECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc--eEEEEC-------C--EEEEEeCCC-CCEecce
Confidence 44555555443211 1236889999999999999876443221 112222 1 455665543 1223456
Q ss_pred EEEEeCCCCcccccCCCCCCCcccccccceEEECCEEEEEecC-------CcEEEEEcCCCeEeeEe-CCCCCCCCccEE
Q 015428 233 FEIYSSRSRSWRTTDTICSEPDVLKLSINGFYMKGFVYWTSLS-------GAILVFDLKDEQYGILP-LPARSGPYGALT 304 (407)
Q Consensus 233 ~~vy~s~t~~W~~~~~~~~~~~~~~~~~~~v~~~G~lYwl~~~-------~~Il~fD~~~e~~~~i~-lP~~~~~~~~l~ 304 (407)
+++|+..+++|+..+..+.+. .....+.++|.+|-++.. ..+..||+.+++|..+. +|... .....+
T Consensus 360 v~~yd~~~~~W~~~~~lp~~r----~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r-~~~~~~ 434 (534)
T PHA03098 360 VESWKPGESKWREEPPLIFPR----YNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH-YGGCAI 434 (534)
T ss_pred EEEEcCCCCceeeCCCcCcCC----ccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc-cCceEE
Confidence 899999999999877554322 234567889999998751 46899999999998875 33332 234567
Q ss_pred EecCeEEEEeeeCCCc----eEEEEEcCC--ccceeeEeeeeecccccCcCCcceEEEeecCCEEEEec------CCEEE
Q 015428 305 QMHGELCYMLPQIQDG----ECLIGVYGN--LDMSLKCVIPVEHEVLGETFSDCRVLTCVNSDILIILL------PNKVI 372 (407)
Q Consensus 305 ~~~G~L~~v~~~~~~~----~w~l~~~~~--~~W~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~lll~~------~~~l~ 372 (407)
..+|+|+++....... .-.++.|+. +.|.... .++ ..+ .....+..++.+.++.. ...+.
T Consensus 435 ~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~---~~r---~~~~~~~~~~~iyv~GG~~~~~~~~~v~ 506 (534)
T PHA03098 435 YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELS--SLN---FPR---INASLCIFNNKIYVVGGDKYEYYINEIE 506 (534)
T ss_pred EECCEEEEECCccCCCCCcccceEEEecCCCCceeeCC--CCC---ccc---ccceEEEECCEEEEEcCCcCCcccceeE
Confidence 7899999887643211 112444443 5564322 111 111 01112223444433321 24689
Q ss_pred EEECCCCeEEEeccc
Q 015428 373 AYHVKAQKMQVVSET 387 (407)
Q Consensus 373 ~yd~~t~~~~~l~~~ 387 (407)
.||+++++|+.+...
T Consensus 507 ~yd~~~~~W~~~~~~ 521 (534)
T PHA03098 507 VYDDKTNTWTLFCKF 521 (534)
T ss_pred EEeCCCCEEEecCCC
Confidence 999999999988764
No 7
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.84 E-value=3.1e-07 Score=94.00 Aligned_cols=209 Identities=11% Similarity=0.114 Sum_probs=135.1
Q ss_pred eEEeecCceEEEeeeccc---CCeEEEEEcCcccceeecCCCCcCCCCcceEEEEecCCCCCCCCCeEEEEEEeccCCCc
Q 015428 152 NIRTTCNGLVCCQSVFEV---GNFFYYICNPVTKEWHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAVPVDQNDV 228 (407)
Q Consensus 152 ~i~~s~~GLll~~~~~~~---~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~~~~~ykVv~~~~~~~~~~ 228 (407)
.-++..+|.|...++.+. .-..+..+||.+++|..+|++...+.. .+++ .-..+|.++++.. +..
T Consensus 326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~---~~v~--------~l~g~iYavGG~d-g~~ 393 (571)
T KOG4441|consen 326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSD---FGVA--------VLDGKLYAVGGFD-GEK 393 (571)
T ss_pred ccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcccc---ceeE--------EECCEEEEEeccc-ccc
Confidence 346677888888776431 236788999999999999998765422 1112 1233566666543 122
Q ss_pred ceEEEEEEeCCCCcccccCCCCCCCcccccccceEEECCEEEEEec----C---CcEEEEEcCCCeEeeEe-CCCCCCCC
Q 015428 229 SIIFFEIYSSRSRSWRTTDTICSEPDVLKLSINGFYMKGFVYWTSL----S---GAILVFDLKDEQYGILP-LPARSGPY 300 (407)
Q Consensus 229 ~~~~~~vy~s~t~~W~~~~~~~~~~~~~~~~~~~v~~~G~lYwl~~----~---~~Il~fD~~~e~~~~i~-lP~~~~~~ 300 (407)
....+|.||+.++.|..+.+..... .....+.++|.+|-++. . ..+.+||+.+++|+.++ ++.... .
T Consensus 394 ~l~svE~YDp~~~~W~~va~m~~~r----~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~-~ 468 (571)
T KOG4441|consen 394 SLNSVECYDPVTNKWTPVAPMLTRR----SGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS-G 468 (571)
T ss_pred ccccEEEecCCCCcccccCCCCcce----eeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc-c
Confidence 3457999999999999998654321 23467889999999875 1 57999999999998874 333322 3
Q ss_pred ccEEEecCeEEEEeeeCC-CceEEEEEcCC--ccceeeEeeeeecccccCcCCcceEEEeecCCEEEEec-------CCE
Q 015428 301 GALTQMHGELCYMLPQIQ-DGECLIGVYGN--LDMSLKCVIPVEHEVLGETFSDCRVLTCVNSDILIILL-------PNK 370 (407)
Q Consensus 301 ~~l~~~~G~L~~v~~~~~-~~~w~l~~~~~--~~W~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~lll~~-------~~~ 370 (407)
..++.++|+|+++....+ ...=.++.|+. ..|.....+.. +. ....++ .-++.+++.. -..
T Consensus 469 ~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~-----~r---s~~g~~-~~~~~ly~vGG~~~~~~l~~ 539 (571)
T KOG4441|consen 469 FGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS-----PR---SAVGVV-VLGGKLYAVGGFDGNNNLNT 539 (571)
T ss_pred ceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc-----cc---ccccEE-EECCEEEEEecccCccccce
Confidence 358889999999987653 22333455554 55644322211 11 001111 2234444421 256
Q ss_pred EEEEECCCCeEEEecc
Q 015428 371 VIAYHVKAQKMQVVSE 386 (407)
Q Consensus 371 l~~yd~~t~~~~~l~~ 386 (407)
+-.||+.+++|+....
T Consensus 540 ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 540 VECYDPETDTWTEVTE 555 (571)
T ss_pred eEEcCCCCCceeeCCC
Confidence 8999999999999987
No 8
>PHA02713 hypothetical protein; Provisional
Probab=98.78 E-value=9.4e-07 Score=90.62 Aligned_cols=192 Identities=10% Similarity=0.084 Sum_probs=115.8
Q ss_pred EEEEEcCcccceeecCCCCcCCCCcceEEEEecCCCCCCCCCeEEEEEEeccCCCcceEEEEEEeCCCCcccccCCCCCC
Q 015428 173 FYYICNPVTKEWHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAVPVDQNDVSIIFFEIYSSRSRSWRTTDTICSE 252 (407)
Q Consensus 173 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~~~~~ykVv~~~~~~~~~~~~~~~~vy~s~t~~W~~~~~~~~~ 252 (407)
.+..+||.|++|..+++.+..... . .+...+ . +|+++++...+......++.||+.++.|..++..+.+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~-~~a~l~--------~-~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~ 341 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-Y-ASAIVD--------N-EIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKN 341 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-e-EEEEEC--------C-EEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcch
Confidence 456799999999999987654321 1 111122 1 5666655321122235789999999999988765432
Q ss_pred CcccccccceEEECCEEEEEecC------CcEEEEEcCCCeEeeEe-CCCCCCCCccEEEecCeEEEEeeeCCCc-----
Q 015428 253 PDVLKLSINGFYMKGFVYWTSLS------GAILVFDLKDEQYGILP-LPARSGPYGALTQMHGELCYMLPQIQDG----- 320 (407)
Q Consensus 253 ~~~~~~~~~~v~~~G~lYwl~~~------~~Il~fD~~~e~~~~i~-lP~~~~~~~~l~~~~G~L~~v~~~~~~~----- 320 (407)
. .....+.++|.+|-++.. ..+-+||+.+.+|..++ +|... .....+.++|+|+++.......
T Consensus 342 R----~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r-~~~~~~~~~g~IYviGG~~~~~~~~~~ 416 (557)
T PHA02713 342 R----CRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIAL-SSYGMCVLDQYIYIIGGRTEHIDYTSV 416 (557)
T ss_pred h----hceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccc-ccccEEEECCEEEEEeCCCcccccccc
Confidence 2 234678899999999762 35889999999999875 33332 2346778899999987643211
Q ss_pred --------------eEEEEEcCC--ccceeeEeeeeecccccCcCCcceEEEeecCCEEEEec--C-----CEEEEEECC
Q 015428 321 --------------ECLIGVYGN--LDMSLKCVIPVEHEVLGETFSDCRVLTCVNSDILIILL--P-----NKVIAYHVK 377 (407)
Q Consensus 321 --------------~w~l~~~~~--~~W~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~lll~~--~-----~~l~~yd~~ 377 (407)
.-.++.|+. +.|.. .-.++ .++ ....++..+|.+-++.. + ..+..||++
T Consensus 417 ~~~~~~~~~~~~~~~~~ve~YDP~td~W~~--v~~m~---~~r---~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~ 488 (557)
T PHA02713 417 HHMNSIDMEEDTHSSNKVIRYDTVNNIWET--LPNFW---TGT---IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTN 488 (557)
T ss_pred cccccccccccccccceEEEECCCCCeEee--cCCCC---ccc---ccCcEEEECCEEEEEeCCCCCCccceeEEEecCC
Confidence 113445543 45532 22221 111 01122334444333321 1 246799999
Q ss_pred C-CeEEEecccC
Q 015428 378 A-QKMQVVSETG 388 (407)
Q Consensus 378 t-~~~~~l~~~~ 388 (407)
+ ++|+.+....
T Consensus 489 ~~~~W~~~~~m~ 500 (557)
T PHA02713 489 TYNGWELITTTE 500 (557)
T ss_pred CCCCeeEccccC
Confidence 9 8999887653
No 9
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.76 E-value=4.4e-09 Score=70.10 Aligned_cols=42 Identities=21% Similarity=0.400 Sum_probs=36.1
Q ss_pred CCCCchHHHHHhcCCCCchhhhhhhcccHhhhhhhcCCcccc
Q 015428 65 NIGLSDVTMEHVLPFLPAKSLCRFKAVSKEWNRWISSPFLAH 106 (407)
Q Consensus 65 ~~~Lpd~lle~IL~rLP~~sl~r~r~VCK~Wr~li~sp~F~~ 106 (407)
|..||+|++.+||+.||++++.+++.|||+|+.++.++.+.+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence 568999999999999999999999999999999998875443
No 10
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.74 E-value=7.8e-07 Score=91.08 Aligned_cols=192 Identities=12% Similarity=0.125 Sum_probs=125.0
Q ss_pred eEEEEEcCcccceeecCCCCcCCCCcceEEEEecCCCCCCCCCeEEEEEEeccCCCcceEEEEEEeCCCCcccccCCCCC
Q 015428 172 FFYYICNPVTKEWHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAVPVDQNDVSIIFFEIYSSRSRSWRTTDTICS 251 (407)
Q Consensus 172 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~~~~~ykVv~~~~~~~~~~~~~~~~vy~s~t~~W~~~~~~~~ 251 (407)
..+..+||.+++|..+.+++..+.. .+.+.- .+ +|.++++...+......++.||+.++.|+.+++...
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~---~~~~~~------~~--~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~ 369 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCR---VGVAVL------NG--KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT 369 (571)
T ss_pred ceeEEecCCcCcEeecCCCCccccc---ccEEEE------CC--EEEEEccccCCCcccceEEEecCCCCceeccCCccC
Confidence 4566899999999999988765431 222221 11 666666553223345689999999999999876544
Q ss_pred CCcccccccceEEECCEEEEEecC------CcEEEEEcCCCeEeeEe-CCCCCCCCccEEEecCeEEEEeeeCCC--ceE
Q 015428 252 EPDVLKLSINGFYMKGFVYWTSLS------GAILVFDLKDEQYGILP-LPARSGPYGALTQMHGELCYMLPQIQD--GEC 322 (407)
Q Consensus 252 ~~~~~~~~~~~v~~~G~lYwl~~~------~~Il~fD~~~e~~~~i~-lP~~~~~~~~l~~~~G~L~~v~~~~~~--~~w 322 (407)
+. .....+.++|.+|-++.. ..+-.||+.+.+|+.+. ++. .......++.+|+|+++...... ..=
T Consensus 370 ~R----~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~~~~~l~ 444 (571)
T KOG4441|consen 370 KR----SDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGGDGSSNCLN 444 (571)
T ss_pred cc----ccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCcCCCccccc
Confidence 33 234778999999999863 37999999999999885 444 33345788899999999886432 223
Q ss_pred EEEEcCC--ccceeeEeeeeecccccCcCCcceEEEeecCCEEEEec------CCEEEEEECCCCeEEEeccc
Q 015428 323 LIGVYGN--LDMSLKCVIPVEHEVLGETFSDCRVLTCVNSDILIILL------PNKVIAYHVKAQKMQVVSET 387 (407)
Q Consensus 323 ~l~~~~~--~~W~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~lll~~------~~~l~~yd~~t~~~~~l~~~ 387 (407)
.++.|+. +.|.....+.... ...+++..++.+..+.. -..+-.||+++++|..+...
T Consensus 445 sve~YDP~t~~W~~~~~M~~~R--------~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m 509 (571)
T KOG4441|consen 445 SVECYDPETNTWTLIAPMNTRR--------SGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM 509 (571)
T ss_pred eEEEEcCCCCceeecCCccccc--------ccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccC
Confidence 4455554 5564433222211 11123344444333321 13478899999999999743
No 11
>PHA02790 Kelch-like protein; Provisional
Probab=98.71 E-value=2.1e-06 Score=86.61 Aligned_cols=195 Identities=8% Similarity=-0.003 Sum_probs=117.4
Q ss_pred cCceEEEeeecc--cCCeEEEEEcCcccceeecCCCCcCCCCcceEEEEecCCCCCCCCCeEEEEEEeccCCCcceEEEE
Q 015428 157 CNGLVCCQSVFE--VGNFFYYICNPVTKEWHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAVPVDQNDVSIIFFE 234 (407)
Q Consensus 157 ~~GLll~~~~~~--~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~~~~~ykVv~~~~~~~~~~~~~~~~ 234 (407)
.+|.+.+.++.. ........+||.+++|..+|+++..+.. . .+...+ -+|.++++.. + ...++
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~-~~v~~~---------~~iYviGG~~--~--~~sve 334 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-A-SGVPAN---------NKLYVVGGLP--N--PTSVE 334 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-c-eEEEEC---------CEEEEECCcC--C--CCceE
Confidence 456665544321 1124567899999999999988754422 1 111222 1566665432 1 13589
Q ss_pred EEeCCCCcccccCCCCCCCcccccccceEEECCEEEEEecC----CcEEEEEcCCCeEeeEeCCCCCCCCccEEEecCeE
Q 015428 235 IYSSRSRSWRTTDTICSEPDVLKLSINGFYMKGFVYWTSLS----GAILVFDLKDEQYGILPLPARSGPYGALTQMHGEL 310 (407)
Q Consensus 235 vy~s~t~~W~~~~~~~~~~~~~~~~~~~v~~~G~lYwl~~~----~~Il~fD~~~e~~~~i~lP~~~~~~~~l~~~~G~L 310 (407)
.|++.++.|..+++.+.+. .....+.++|.+|.++.. ..+..||+.+++|+.++.++........+..+|+|
T Consensus 335 ~ydp~~n~W~~~~~l~~~r----~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~I 410 (480)
T PHA02790 335 RWFHGDAAWVNMPSLLKPR----CNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRL 410 (480)
T ss_pred EEECCCCeEEECCCCCCCC----cccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEE
Confidence 9999999999887654322 234678899999998752 45789999999999875433333334677889999
Q ss_pred EEEeeeCCCceEEEEEcCCccceeeEeeeeecccccCcCCcceEEEeecCCEEEEecC-------CEEEEEECCCCeEEE
Q 015428 311 CYMLPQIQDGECLIGVYGNLDMSLKCVIPVEHEVLGETFSDCRVLTCVNSDILIILLP-------NKVIAYHVKAQKMQV 383 (407)
Q Consensus 311 ~~v~~~~~~~~w~l~~~~~~~W~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~lll~~~-------~~l~~yd~~t~~~~~ 383 (407)
+++... . ..-+.+.+.|.... .++. .+ ....++..+|. |++-.+ ..+-.||+++++|+-
T Consensus 411 Yv~GG~--~---e~ydp~~~~W~~~~--~m~~---~r---~~~~~~v~~~~-IYviGG~~~~~~~~~ve~Yd~~~~~W~~ 476 (480)
T PHA02790 411 FLVGRN--A---EFYCESSNTWTLID--DPIY---PR---DNPELIIVDNK-LLLIGGFYRGSYIDTIEVYNNRTYSWNI 476 (480)
T ss_pred EEECCc--e---EEecCCCCcEeEcC--CCCC---Cc---cccEEEEECCE-EEEECCcCCCcccceEEEEECCCCeEEe
Confidence 998642 1 11223446664322 2211 11 11122334444 343221 358899999999974
Q ss_pred e
Q 015428 384 V 384 (407)
Q Consensus 384 l 384 (407)
.
T Consensus 477 ~ 477 (480)
T PHA02790 477 W 477 (480)
T ss_pred c
Confidence 3
No 12
>PLN02153 epithiospecifier protein
Probab=98.67 E-value=1.3e-05 Score=77.37 Aligned_cols=152 Identities=11% Similarity=0.060 Sum_probs=90.2
Q ss_pred EeecCceEEEeeeccc----CCeEEEEEcCcccceeecCCCCc-CCCCc-ceEEEEecCCCCCCCCCeEEEEEEeccCCC
Q 015428 154 RTTCNGLVCCQSVFEV----GNFFYYICNPVTKEWHVLPQPKF-FHGPE-TAVALVFEPSALGFSAHYEVVCAVPVDQND 227 (407)
Q Consensus 154 ~~s~~GLll~~~~~~~----~~~~~~V~NP~T~~~~~LP~~~~-~~~~~-~~~~l~~d~~~~~~~~~ykVv~~~~~~~~~ 227 (407)
+...++.|.+.++... ....++++||.+++|..+|+... ..... ...+..++ + +|++++.... .
T Consensus 28 ~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~-------~--~iyv~GG~~~-~ 97 (341)
T PLN02153 28 IAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVG-------T--KLYIFGGRDE-K 97 (341)
T ss_pred EEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEEC-------C--EEEEECCCCC-C
Confidence 3345666666544211 12468999999999999886432 11111 11112222 1 5666654321 1
Q ss_pred cceEEEEEEeCCCCcccccCCCCCCC-cccccccceEEECCEEEEEecC------------CcEEEEEcCCCeEeeEeCC
Q 015428 228 VSIIFFEIYSSRSRSWRTTDTICSEP-DVLKLSINGFYMKGFVYWTSLS------------GAILVFDLKDEQYGILPLP 294 (407)
Q Consensus 228 ~~~~~~~vy~s~t~~W~~~~~~~~~~-~~~~~~~~~v~~~G~lYwl~~~------------~~Il~fD~~~e~~~~i~lP 294 (407)
.....+++||..++.|+.++...... +........+..+|.+|.+... ..+.+||+.+.+|..++.+
T Consensus 98 ~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~ 177 (341)
T PLN02153 98 REFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDP 177 (341)
T ss_pred CccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCC
Confidence 12346899999999999876431110 1111233567889999988641 2488999999999987643
Q ss_pred C---CCCCCccEEEecCeEEEEee
Q 015428 295 A---RSGPYGALTQMHGELCYMLP 315 (407)
Q Consensus 295 ~---~~~~~~~l~~~~G~L~~v~~ 315 (407)
. .......++..+|+|+++..
T Consensus 178 ~~~~~~r~~~~~~~~~~~iyv~GG 201 (341)
T PLN02153 178 GENFEKRGGAGFAVVQGKIWVVYG 201 (341)
T ss_pred CCCCCCCCcceEEEECCeEEEEec
Confidence 2 12222356778999998754
No 13
>PHA02790 Kelch-like protein; Provisional
Probab=98.58 E-value=3.3e-06 Score=85.24 Aligned_cols=143 Identities=6% Similarity=-0.043 Sum_probs=97.2
Q ss_pred EEeecCceEEEeeecccCCeEEEEEcCcccceeecCCCCcCCCCcceEEEEecCCCCCCCCCeEEEEEEeccCCCcceEE
Q 015428 153 IRTTCNGLVCCQSVFEVGNFFYYICNPVTKEWHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAVPVDQNDVSIIF 232 (407)
Q Consensus 153 i~~s~~GLll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~~~~~ykVv~~~~~~~~~~~~~~ 232 (407)
...+.+|.|.+.++.. ....+..++|.+++|..+|+++..+.. ..+..++ =+|.++++... ....
T Consensus 313 ~~v~~~~~iYviGG~~-~~~sve~ydp~~n~W~~~~~l~~~r~~--~~~~~~~---------g~IYviGG~~~---~~~~ 377 (480)
T PHA02790 313 SGVPANNKLYVVGGLP-NPTSVERWFHGDAAWVNMPSLLKPRCN--PAVASIN---------NVIYVIGGHSE---TDTT 377 (480)
T ss_pred eEEEECCEEEEECCcC-CCCceEEEECCCCeEEECCCCCCCCcc--cEEEEEC---------CEEEEecCcCC---CCcc
Confidence 3456788888776531 224467789999999999998754421 1222333 15666654321 1246
Q ss_pred EEEEeCCCCcccccCCCCCCCcccccccceEEECCEEEEEecCCcEEEEEcCCCeEeeEeCCCCCCCCccEEEecCeEEE
Q 015428 233 FEIYSSRSRSWRTTDTICSEPDVLKLSINGFYMKGFVYWTSLSGAILVFDLKDEQYGILPLPARSGPYGALTQMHGELCY 312 (407)
Q Consensus 233 ~~vy~s~t~~W~~~~~~~~~~~~~~~~~~~v~~~G~lYwl~~~~~Il~fD~~~e~~~~i~lP~~~~~~~~l~~~~G~L~~ 312 (407)
++.||++++.|+.++..+.+.. ....+.++|.+|.++ +..-+||+.+++|+.++-.+.......++..+|+|++
T Consensus 378 ve~ydp~~~~W~~~~~m~~~r~----~~~~~~~~~~IYv~G--G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYv 451 (480)
T PHA02790 378 TEYLLPNHDQWQFGPSTYYPHY----KSCALVFGRRLFLVG--RNAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLL 451 (480)
T ss_pred EEEEeCCCCEEEeCCCCCCccc----cceEEEECCEEEEEC--CceEEecCCCCcEeEcCCCCCCccccEEEEECCEEEE
Confidence 8999999999999876543321 235678999999987 4578899999999988522222334578889999999
Q ss_pred Eeee
Q 015428 313 MLPQ 316 (407)
Q Consensus 313 v~~~ 316 (407)
+...
T Consensus 452 iGG~ 455 (480)
T PHA02790 452 IGGF 455 (480)
T ss_pred ECCc
Confidence 9865
No 14
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.51 E-value=5.3e-05 Score=72.53 Aligned_cols=128 Identities=13% Similarity=0.101 Sum_probs=79.7
Q ss_pred EEEEE-cCccc-ceeecCCCCcCCCCcceEEEEecCCCCCCCCCeEEEEEEeccCCCcceEEEEEEeCCCCcc----ccc
Q 015428 173 FYYIC-NPVTK-EWHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAVPVDQNDVSIIFFEIYSSRSRSW----RTT 246 (407)
Q Consensus 173 ~~~V~-NP~T~-~~~~LP~~~~~~~~~~~~~l~~d~~~~~~~~~ykVv~~~~~~~~~~~~~~~~vy~s~t~~W----~~~ 246 (407)
.+++. +|..+ +|..+++.+..+... .+..++ . +|++++.... ......++.|+..++.| +..
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~~~--~~~~~~--------~-~lyviGG~~~-~~~~~~v~~~d~~~~~w~~~~~~~ 107 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAAYG--ASVSVE--------N-GIYYIGGSNS-SERFSSVYRITLDESKEELICETI 107 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccccce--EEEEEC--------C-EEEEEcCCCC-CCCceeEEEEEEcCCceeeeeeEc
Confidence 45666 45433 788888765543211 122222 1 4555554321 22345788999999988 444
Q ss_pred CCCCCCCcccccccceEEECCEEEEEecC------CcEEEEEcCCCeEeeEe-CCCCCCCCccEEEecCeEEEEeee
Q 015428 247 DTICSEPDVLKLSINGFYMKGFVYWTSLS------GAILVFDLKDEQYGILP-LPARSGPYGALTQMHGELCYMLPQ 316 (407)
Q Consensus 247 ~~~~~~~~~~~~~~~~v~~~G~lYwl~~~------~~Il~fD~~~e~~~~i~-lP~~~~~~~~l~~~~G~L~~v~~~ 316 (407)
+..+.+. .....+.++|.+|.+... ..+.+||+.+.+|+.++ +|.........+..+|+|+++...
T Consensus 108 ~~lp~~~----~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~ 180 (323)
T TIGR03548 108 GNLPFTF----ENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGG 180 (323)
T ss_pred CCCCcCc----cCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCC
Confidence 4332221 234677889999998652 46999999999999885 564333334567789999998764
No 15
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.51 E-value=4.4e-08 Score=63.08 Aligned_cols=39 Identities=36% Similarity=0.568 Sum_probs=36.1
Q ss_pred CchHHHHHhcCCCCchhhhhhhcccHhhhhhhcCCcccc
Q 015428 68 LSDVTMEHVLPFLPAKSLCRFKAVSKEWNRWISSPFLAH 106 (407)
Q Consensus 68 Lpd~lle~IL~rLP~~sl~r~r~VCK~Wr~li~sp~F~~ 106 (407)
||++++.+||.+|+++++.++++|||+|+.++.++.|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 688999999999999999999999999999999987754
No 16
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.48 E-value=8.5e-05 Score=71.82 Aligned_cols=147 Identities=17% Similarity=0.204 Sum_probs=90.5
Q ss_pred EeecCceEEEeeecccCCeEEEEEc--CcccceeecCCCCc-CCCCcceEEEEecCCCCCCCCCeEEEEEEeccCCC---
Q 015428 154 RTTCNGLVCCQSVFEVGNFFYYICN--PVTKEWHVLPQPKF-FHGPETAVALVFEPSALGFSAHYEVVCAVPVDQND--- 227 (407)
Q Consensus 154 ~~s~~GLll~~~~~~~~~~~~~V~N--P~T~~~~~LP~~~~-~~~~~~~~~l~~d~~~~~~~~~ykVv~~~~~~~~~--- 227 (407)
.+..++-|.+..+ .....+++++ |.+++|..+|+++. .+ ... .+...+ + +|.+++......
T Consensus 13 ~~~~~~~vyv~GG--~~~~~~~~~d~~~~~~~W~~l~~~p~~~R-~~~-~~~~~~-------~--~iYv~GG~~~~~~~~ 79 (346)
T TIGR03547 13 GAIIGDKVYVGLG--SAGTSWYKLDLKKPSKGWQKIADFPGGPR-NQA-VAAAID-------G--KLYVFGGIGKANSEG 79 (346)
T ss_pred EEEECCEEEEEcc--ccCCeeEEEECCCCCCCceECCCCCCCCc-ccc-eEEEEC-------C--EEEEEeCCCCCCCCC
Confidence 3355666766554 2234577777 47889999998763 22 111 112222 1 566666542111
Q ss_pred --cceEEEEEEeCCCCcccccCCCCCCCcccccccceE-EECCEEEEEecC-----------------------------
Q 015428 228 --VSIIFFEIYSSRSRSWRTTDTICSEPDVLKLSINGF-YMKGFVYWTSLS----------------------------- 275 (407)
Q Consensus 228 --~~~~~~~vy~s~t~~W~~~~~~~~~~~~~~~~~~~v-~~~G~lYwl~~~----------------------------- 275 (407)
.....++.||+.+++|+.+.. +.+... .....+ .++|.+|-+...
T Consensus 80 ~~~~~~~v~~Yd~~~~~W~~~~~-~~p~~~--~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T TIGR03547 80 SPQVFDDVYRYDPKKNSWQKLDT-RSPVGL--LGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAY 156 (346)
T ss_pred cceecccEEEEECCCCEEecCCC-CCCCcc--cceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHH
Confidence 123468999999999999863 122111 111233 579999998642
Q ss_pred -----------CcEEEEEcCCCeEeeEe-CCCCCCCCccEEEecCeEEEEeee
Q 015428 276 -----------GAILVFDLKDEQYGILP-LPARSGPYGALTQMHGELCYMLPQ 316 (407)
Q Consensus 276 -----------~~Il~fD~~~e~~~~i~-lP~~~~~~~~l~~~~G~L~~v~~~ 316 (407)
..+.+||+.+.+|+.+. +|........++..+|+|+++...
T Consensus 157 ~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~ 209 (346)
T TIGR03547 157 FSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGE 209 (346)
T ss_pred hCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeee
Confidence 46899999999999884 443222334677889999999764
No 17
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.44 E-value=2.5e-08 Score=66.80 Aligned_cols=42 Identities=33% Similarity=0.547 Sum_probs=35.6
Q ss_pred CCCCchHHHHHhcCCCCchhhhhhhcccHhhhhhhcCCcccc
Q 015428 65 NIGLSDVTMEHVLPFLPAKSLCRFKAVSKEWNRWISSPFLAH 106 (407)
Q Consensus 65 ~~~Lpd~lle~IL~rLP~~sl~r~r~VCK~Wr~li~sp~F~~ 106 (407)
|..||++++.+||.+|+++++++++.|||+|++++.++.+..
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~ 44 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWK 44 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccH
Confidence 567999999999999999999999999999999999887654
No 18
>PHA03098 kelch-like protein; Provisional
Probab=98.43 E-value=2.3e-05 Score=80.38 Aligned_cols=150 Identities=11% Similarity=0.071 Sum_probs=97.4
Q ss_pred EEeecCceEEEeeecc--cCCeEEEEEcCcccceeecCCCCcCCCCcceEEEEecCCCCCCCCCeEEEEEEeccCCCcce
Q 015428 153 IRTTCNGLVCCQSVFE--VGNFFYYICNPVTKEWHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAVPVDQNDVSI 230 (407)
Q Consensus 153 i~~s~~GLll~~~~~~--~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~~~~~ykVv~~~~~~~~~~~~ 230 (407)
-+.+.+|.+.+.++.. .....+.++||.|++|..+|+.+..+.. . .+..++ + +|..+++...++...
T Consensus 337 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~-~~~~~~-------~--~iYv~GG~~~~~~~~ 405 (534)
T PHA03098 337 GVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-P-CVVNVN-------N--LIYVIGGISKNDELL 405 (534)
T ss_pred eEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-c-eEEEEC-------C--EEEEECCcCCCCccc
Confidence 3456677777766532 1224578899999999999987654321 1 112222 2 555555432222234
Q ss_pred EEEEEEeCCCCcccccCCCCCCCcccccccceEEECCEEEEEecC---------CcEEEEEcCCCeEeeEeCCCCCCCCc
Q 015428 231 IFFEIYSSRSRSWRTTDTICSEPDVLKLSINGFYMKGFVYWTSLS---------GAILVFDLKDEQYGILPLPARSGPYG 301 (407)
Q Consensus 231 ~~~~vy~s~t~~W~~~~~~~~~~~~~~~~~~~v~~~G~lYwl~~~---------~~Il~fD~~~e~~~~i~lP~~~~~~~ 301 (407)
..+++||+.+++|+.....+.+. .....+..+|.+|-++.. ..+.+||+.+++|+.++..+......
T Consensus 406 ~~v~~yd~~t~~W~~~~~~p~~r----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~ 481 (534)
T PHA03098 406 KTVECFSLNTNKWSKGSPLPISH----YGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINA 481 (534)
T ss_pred ceEEEEeCCCCeeeecCCCCccc----cCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccc
Confidence 57899999999999887543322 234578889999998742 23899999999999885222222234
Q ss_pred cEEEecCeEEEEeeeC
Q 015428 302 ALTQMHGELCYMLPQI 317 (407)
Q Consensus 302 ~l~~~~G~L~~v~~~~ 317 (407)
.++..+|+|+++....
T Consensus 482 ~~~~~~~~iyv~GG~~ 497 (534)
T PHA03098 482 SLCIFNNKIYVVGGDK 497 (534)
T ss_pred eEEEECCEEEEEcCCc
Confidence 5677799999987653
No 19
>PLN02193 nitrile-specifier protein
Probab=98.41 E-value=6.3e-05 Score=75.76 Aligned_cols=200 Identities=11% Similarity=0.054 Sum_probs=111.4
Q ss_pred eEEEEEcCcccceeecCCCCcCCC--CcceEEEEecCCCCCCCCCeEEEEEEeccCCCcceEEEEEEeCCCCcccccCCC
Q 015428 172 FFYYICNPVTKEWHVLPQPKFFHG--PETAVALVFEPSALGFSAHYEVVCAVPVDQNDVSIIFFEIYSSRSRSWRTTDTI 249 (407)
Q Consensus 172 ~~~~V~NP~T~~~~~LP~~~~~~~--~~~~~~l~~d~~~~~~~~~ykVv~~~~~~~~~~~~~~~~vy~s~t~~W~~~~~~ 249 (407)
..++++||.+.+|..+|+...... .....+..++ . ++++++.... ......+++||+.++.|+.+...
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~--------~-~lYvfGG~~~-~~~~ndv~~yD~~t~~W~~l~~~ 262 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIG--------S-TLYVFGGRDA-SRQYNGFYSFDTTTNEWKLLTPV 262 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEEC--------C-EEEEECCCCC-CCCCccEEEEECCCCEEEEcCcC
Confidence 358899999999998875321111 1111112222 1 4455543321 12234689999999999987654
Q ss_pred CCCCcccccccceEEECCEEEEEecC------CcEEEEEcCCCeEeeEeCCCC---CCCCccEEEecCeEEEEeeeCC--
Q 015428 250 CSEPDVLKLSINGFYMKGFVYWTSLS------GAILVFDLKDEQYGILPLPAR---SGPYGALTQMHGELCYMLPQIQ-- 318 (407)
Q Consensus 250 ~~~~~~~~~~~~~v~~~G~lYwl~~~------~~Il~fD~~~e~~~~i~lP~~---~~~~~~l~~~~G~L~~v~~~~~-- 318 (407)
.... ........+.+++.+|.+... ..+.+||+.+.+|+.++.|.. ......++..+|+++++.....
T Consensus 263 ~~~P-~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~ 341 (470)
T PLN02193 263 EEGP-TPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCE 341 (470)
T ss_pred CCCC-CCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCc
Confidence 2111 111223567789999998652 358899999999998865432 1123356678999988865421
Q ss_pred -CceEEEEEcCCccceeeEeeeeecccccCcCCcceEEEeecCCEEEEecC---------------CEEEEEECCCCeEE
Q 015428 319 -DGECLIGVYGNLDMSLKCVIPVEHEVLGETFSDCRVLTCVNSDILIILLP---------------NKVIAYHVKAQKMQ 382 (407)
Q Consensus 319 -~~~w~l~~~~~~~W~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~lll~~~---------------~~l~~yd~~t~~~~ 382 (407)
.++|... ...+.|.......-.+ .. ......+..++.++++.-. ..++.||+.+++|+
T Consensus 342 ~~dv~~yD-~~t~~W~~~~~~g~~P--~~---R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~ 415 (470)
T PLN02193 342 VDDVHYYD-PVQDKWTQVETFGVRP--SE---RSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWE 415 (470)
T ss_pred cCceEEEE-CCCCEEEEeccCCCCC--CC---cceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEE
Confidence 3344432 2345564432110000 00 0111222334443333210 24899999999999
Q ss_pred EecccC
Q 015428 383 VVSETG 388 (407)
Q Consensus 383 ~l~~~~ 388 (407)
.+...+
T Consensus 416 ~~~~~~ 421 (470)
T PLN02193 416 RLDKFG 421 (470)
T ss_pred EcccCC
Confidence 997543
No 20
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.31 E-value=3.8e-05 Score=73.49 Aligned_cols=151 Identities=13% Similarity=0.093 Sum_probs=93.6
Q ss_pred EEeecCceEEEeeecc--cCCeEEEEEcCcccceeecCCCCc-CCCCcceEEEEecCCCCCCCCCeEEEEEEeccCCCcc
Q 015428 153 IRTTCNGLVCCQSVFE--VGNFFYYICNPVTKEWHVLPQPKF-FHGPETAVALVFEPSALGFSAHYEVVCAVPVDQNDVS 229 (407)
Q Consensus 153 i~~s~~GLll~~~~~~--~~~~~~~V~NP~T~~~~~LP~~~~-~~~~~~~~~l~~d~~~~~~~~~ykVv~~~~~~~~~~~ 229 (407)
.....+|.|.+.++.. .....++++||.|++|..+|+.+. .+. ...+..++ + +|.+++... ...
T Consensus 118 ~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~--~~~~~~~~-------~--~iYv~GG~~--~~~ 184 (323)
T TIGR03548 118 SACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRV--QPVCVKLQ-------N--ELYVFGGGS--NIA 184 (323)
T ss_pred eEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCC--cceEEEEC-------C--EEEEEcCCC--Ccc
Confidence 4456778887765421 123578999999999999986543 221 11222222 1 455555432 112
Q ss_pred eEEEEEEeCCCCcccccCCCCCCC-cccccccc-eEEECCEEEEEecC--------------------------------
Q 015428 230 IIFFEIYSSRSRSWRTTDTICSEP-DVLKLSIN-GFYMKGFVYWTSLS-------------------------------- 275 (407)
Q Consensus 230 ~~~~~vy~s~t~~W~~~~~~~~~~-~~~~~~~~-~v~~~G~lYwl~~~-------------------------------- 275 (407)
...+++||.++++|+.+....... +....... .++.+|.+|.+...
T Consensus 185 ~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (323)
T TIGR03548 185 YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPP 264 (323)
T ss_pred ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCc
Confidence 235689999999999887542111 11101122 34447899988642
Q ss_pred ------CcEEEEEcCCCeEeeEe-CCCCCCCCccEEEecCeEEEEeee
Q 015428 276 ------GAILVFDLKDEQYGILP-LPARSGPYGALTQMHGELCYMLPQ 316 (407)
Q Consensus 276 ------~~Il~fD~~~e~~~~i~-lP~~~~~~~~l~~~~G~L~~v~~~ 316 (407)
..+.+||+.+++|+.+. +|........++..+|+|+++...
T Consensus 265 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~ 312 (323)
T TIGR03548 265 EWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSINGE 312 (323)
T ss_pred cccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEecc
Confidence 35999999999999886 443223344688899999998764
No 21
>PLN02193 nitrile-specifier protein
Probab=98.30 E-value=0.00035 Score=70.38 Aligned_cols=197 Identities=11% Similarity=0.083 Sum_probs=107.8
Q ss_pred EEEEEcCcc----cceeecCCC---CcCCCCcceEEEEecCCCCCCCCCeEEEEEEeccCCC-cceEEEEEEeCCCCccc
Q 015428 173 FYYICNPVT----KEWHVLPQP---KFFHGPETAVALVFEPSALGFSAHYEVVCAVPVDQND-VSIIFFEIYSSRSRSWR 244 (407)
Q Consensus 173 ~~~V~NP~T----~~~~~LP~~---~~~~~~~~~~~l~~d~~~~~~~~~ykVv~~~~~~~~~-~~~~~~~vy~s~t~~W~ 244 (407)
..++++|.| .+|..+++. |..+. .. .+... +. +|+.++...... .....+++||.++++|+
T Consensus 138 g~y~~~~~~~~~~~~W~~~~~~~~~P~pR~-~h-~~~~~--------~~-~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~ 206 (470)
T PLN02193 138 GAYISLPSTPKLLGKWIKVEQKGEGPGLRC-SH-GIAQV--------GN-KIYSFGGEFTPNQPIDKHLYVFDLETRTWS 206 (470)
T ss_pred EEEEecCCChhhhceEEEcccCCCCCCCcc-cc-EEEEE--------CC-EEEEECCcCCCCCCeeCcEEEEECCCCEEE
Confidence 467888876 789888763 22221 11 11111 11 455554432111 12235899999999999
Q ss_pred ccCCCC-CCCcccccccceEEECCEEEEEecC------CcEEEEEcCCCeEeeEeC----CCCCCCCccEEEecCeEEEE
Q 015428 245 TTDTIC-SEPDVLKLSINGFYMKGFVYWTSLS------GAILVFDLKDEQYGILPL----PARSGPYGALTQMHGELCYM 313 (407)
Q Consensus 245 ~~~~~~-~~~~~~~~~~~~v~~~G~lYwl~~~------~~Il~fD~~~e~~~~i~l----P~~~~~~~~l~~~~G~L~~v 313 (407)
.+.... .+.. .......+.+++.||-+... ..+.+||+.+.+|+.+.. |.... ...++..+++|+++
T Consensus 207 ~~~~~g~~P~~-~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~-~h~~~~~~~~iYv~ 284 (470)
T PLN02193 207 ISPATGDVPHL-SCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRS-FHSMAADEENVYVF 284 (470)
T ss_pred eCCCCCCCCCC-cccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCcc-ceEEEEECCEEEEE
Confidence 765321 1111 01233567889999998652 468899999999998743 22222 23566678999888
Q ss_pred eeeCC-CceEEEEEcC--CccceeeEeeeeecccccCcCCcceEEEeecCCEEEEec-----CCEEEEEECCCCeEEEec
Q 015428 314 LPQIQ-DGECLIGVYG--NLDMSLKCVIPVEHEVLGETFSDCRVLTCVNSDILIILL-----PNKVIAYHVKAQKMQVVS 385 (407)
Q Consensus 314 ~~~~~-~~~w~l~~~~--~~~W~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~lll~~-----~~~l~~yd~~t~~~~~l~ 385 (407)
..... ...-.++.++ ...|.... .+...... .....++..++.+.++.. ...+..||+++++|+.+.
T Consensus 285 GG~~~~~~~~~~~~yd~~t~~W~~~~---~~~~~~~~--R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~ 359 (470)
T PLN02193 285 GGVSATARLKTLDSYNIVDKKWFHCS---TPGDSFSI--RGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVE 359 (470)
T ss_pred CCCCCCCCcceEEEEECCCCEEEeCC---CCCCCCCC--CCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEec
Confidence 76432 1112233333 35554321 11000000 011122334555444421 156999999999999996
Q ss_pred cc
Q 015428 386 ET 387 (407)
Q Consensus 386 ~~ 387 (407)
..
T Consensus 360 ~~ 361 (470)
T PLN02193 360 TF 361 (470)
T ss_pred cC
Confidence 53
No 22
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.21 E-value=0.00028 Score=69.08 Aligned_cols=148 Identities=16% Similarity=0.112 Sum_probs=88.9
Q ss_pred EeecCceEEEeeecccCCeEEEEEcCc--ccceeecCCCCcCCCCcceEEEEecCCCCCCCCCeEEEEEEeccC-CC---
Q 015428 154 RTTCNGLVCCQSVFEVGNFFYYICNPV--TKEWHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAVPVDQ-ND--- 227 (407)
Q Consensus 154 ~~s~~GLll~~~~~~~~~~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~~~~~ykVv~~~~~~~-~~--- 227 (407)
.+..++-|.+..+ .....++++++. +++|..+|+.+....... .+...+ + +|.+++.... ..
T Consensus 34 ~~~~~~~iyv~gG--~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~-~~v~~~-------~--~IYV~GG~~~~~~~~~ 101 (376)
T PRK14131 34 GAIDNNTVYVGLG--SAGTSWYKLDLNAPSKGWTKIAAFPGGPREQA-VAAFID-------G--KLYVFGGIGKTNSEGS 101 (376)
T ss_pred EEEECCEEEEEeC--CCCCeEEEEECCCCCCCeEECCcCCCCCcccc-eEEEEC-------C--EEEEEcCCCCCCCCCc
Confidence 4456777776554 233456777764 578999987653211111 111222 1 4555554321 00
Q ss_pred -cceEEEEEEeCCCCcccccCCCCCCCcccccccceEE-ECCEEEEEecC------------------------------
Q 015428 228 -VSIIFFEIYSSRSRSWRTTDTICSEPDVLKLSINGFY-MKGFVYWTSLS------------------------------ 275 (407)
Q Consensus 228 -~~~~~~~vy~s~t~~W~~~~~~~~~~~~~~~~~~~v~-~~G~lYwl~~~------------------------------ 275 (407)
.....+++||..++.|+.+... .+... .....+. .+|.||.+...
T Consensus 102 ~~~~~~v~~YD~~~n~W~~~~~~-~p~~~--~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~ 178 (376)
T PRK14131 102 PQVFDDVYKYDPKTNSWQKLDTR-SPVGL--AGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYF 178 (376)
T ss_pred eeEcccEEEEeCCCCEEEeCCCC-CCCcc--cceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHh
Confidence 1124689999999999998742 11111 1123344 79999998652
Q ss_pred ----------CcEEEEEcCCCeEeeEe-CCCCCCCCccEEEecCeEEEEeee
Q 015428 276 ----------GAILVFDLKDEQYGILP-LPARSGPYGALTQMHGELCYMLPQ 316 (407)
Q Consensus 276 ----------~~Il~fD~~~e~~~~i~-lP~~~~~~~~l~~~~G~L~~v~~~ 316 (407)
..+.+||+.+.+|..+. +|........++..+++|+++...
T Consensus 179 ~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~ 230 (376)
T PRK14131 179 DKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGE 230 (376)
T ss_pred cCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeee
Confidence 35899999999999875 443222234667789999998764
No 23
>PLN02153 epithiospecifier protein
Probab=98.10 E-value=0.00067 Score=65.43 Aligned_cols=100 Identities=7% Similarity=0.082 Sum_probs=63.7
Q ss_pred EEEEEEeccCC-CcceEEEEEEeCCCCcccccCCCCCCCcccccccceEEECCEEEEEecC------CcEEEEEcCCCeE
Q 015428 216 EVVCAVPVDQN-DVSIIFFEIYSSRSRSWRTTDTICSEPDVLKLSINGFYMKGFVYWTSLS------GAILVFDLKDEQY 288 (407)
Q Consensus 216 kVv~~~~~~~~-~~~~~~~~vy~s~t~~W~~~~~~~~~~~~~~~~~~~v~~~G~lYwl~~~------~~Il~fD~~~e~~ 288 (407)
+|+.++..... ......+++||..++.|+..................+.++|.||-+... ..+.+||+.+.+|
T Consensus 34 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W 113 (341)
T PLN02153 34 KLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEW 113 (341)
T ss_pred EEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEE
Confidence 56665543211 1122468999999999998764321111111133568889999998752 3689999999999
Q ss_pred eeEeC------CCCCCCCccEEEecCeEEEEeee
Q 015428 289 GILPL------PARSGPYGALTQMHGELCYMLPQ 316 (407)
Q Consensus 289 ~~i~l------P~~~~~~~~l~~~~G~L~~v~~~ 316 (407)
..++- |... .....+..+|+|+++...
T Consensus 114 ~~~~~~~~~~~p~~R-~~~~~~~~~~~iyv~GG~ 146 (341)
T PLN02153 114 TFLTKLDEEGGPEAR-TFHSMASDENHVYVFGGV 146 (341)
T ss_pred EEeccCCCCCCCCCc-eeeEEEEECCEEEEECCc
Confidence 98752 2222 233567788999888664
No 24
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=97.94 E-value=0.0034 Score=61.45 Aligned_cols=150 Identities=14% Similarity=0.059 Sum_probs=88.5
Q ss_pred EEeecCceEEEeeeccc--------CCeEEEEEcCcccceeecCCC-CcCCCCcceEEEE-ecCCCCCCCCCeEEEEEEe
Q 015428 153 IRTTCNGLVCCQSVFEV--------GNFFYYICNPVTKEWHVLPQP-KFFHGPETAVALV-FEPSALGFSAHYEVVCAVP 222 (407)
Q Consensus 153 i~~s~~GLll~~~~~~~--------~~~~~~V~NP~T~~~~~LP~~-~~~~~~~~~~~l~-~d~~~~~~~~~ykVv~~~~ 222 (407)
.+.+.+|.|.+.++... ....++++||.+++|..+|.+ +... ....+.. .+ =+|.+++.
T Consensus 79 ~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~--~~~~~~~~~~---------~~IYv~GG 147 (376)
T PRK14131 79 VAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGL--AGHVAVSLHN---------GKAYITGG 147 (376)
T ss_pred eEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcc--cceEEEEeeC---------CEEEEECC
Confidence 35567787777655311 014588999999999999853 2211 1111222 22 14555543
Q ss_pred ccCC--------------------------------C-cceEEEEEEeCCCCcccccCCCCCCCcccccccceEEECCEE
Q 015428 223 VDQN--------------------------------D-VSIIFFEIYSSRSRSWRTTDTICSEPDVLKLSINGFYMKGFV 269 (407)
Q Consensus 223 ~~~~--------------------------------~-~~~~~~~vy~s~t~~W~~~~~~~~~~~~~~~~~~~v~~~G~l 269 (407)
.... + .....+++||..++.|+.....+.... .....+.++|.|
T Consensus 148 ~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~---~~~a~v~~~~~i 224 (376)
T PRK14131 148 VNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGT---AGSAVVIKGNKL 224 (376)
T ss_pred CCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCC---CcceEEEECCEE
Confidence 2100 0 012468999999999998875432111 223567789999
Q ss_pred EEEecC---------CcEEEEEcCCCeEeeEe-CCCCCC---C---C-ccEEEecCeEEEEeee
Q 015428 270 YWTSLS---------GAILVFDLKDEQYGILP-LPARSG---P---Y-GALTQMHGELCYMLPQ 316 (407)
Q Consensus 270 Ywl~~~---------~~Il~fD~~~e~~~~i~-lP~~~~---~---~-~~l~~~~G~L~~v~~~ 316 (407)
|.+... -....||+++.+|+.+. +|.... . . ...+.++|+|+++...
T Consensus 225 Yv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~ 288 (376)
T PRK14131 225 WLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGA 288 (376)
T ss_pred EEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeecc
Confidence 998741 13456788899998774 554321 1 1 1245689999988653
No 25
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=97.82 E-value=0.0013 Score=63.59 Aligned_cols=135 Identities=10% Similarity=0.116 Sum_probs=81.8
Q ss_pred eEEEEEcCcccceeecCCCCcCCCCcceEEEEecCCCCCCCCCeEEEEEEeccCCCcceEEEEEEe--CCCCcccccCCC
Q 015428 172 FFYYICNPVTKEWHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAVPVDQNDVSIIFFEIYS--SRSRSWRTTDTI 249 (407)
Q Consensus 172 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~~~~~ykVv~~~~~~~~~~~~~~~~vy~--s~t~~W~~~~~~ 249 (407)
..+.++||.|++|..+++++....... .+..++ + ||..++.....+.....+++|+ ++++.|..+...
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~-~~~~~~-------~--~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m 237 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGS-AIVHKG-------N--KLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPL 237 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCc-eEEEEC-------C--EEEEEeeeeCCCccchheEEEEecCCCceeeecCCC
Confidence 468899999999999998663211111 222222 2 5555554321111223345554 577899988765
Q ss_pred CCCCcccc---cccceEEECCEEEEEecC-----------------------CcEEEEEcCCCeEeeE-eCCCCCCCCcc
Q 015428 250 CSEPDVLK---LSINGFYMKGFVYWTSLS-----------------------GAILVFDLKDEQYGIL-PLPARSGPYGA 302 (407)
Q Consensus 250 ~~~~~~~~---~~~~~v~~~G~lYwl~~~-----------------------~~Il~fD~~~e~~~~i-~lP~~~~~~~~ 302 (407)
+.+..... .....+.++|.||.+... ..+-+||+.+++|+.+ ++|.... ...
T Consensus 238 ~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~-~~~ 316 (346)
T TIGR03547 238 PPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLA-YGV 316 (346)
T ss_pred CCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCce-eeE
Confidence 43321100 112357789999998642 1467899999999877 4555432 335
Q ss_pred EEEecCeEEEEeeeC
Q 015428 303 LTQMHGELCYMLPQI 317 (407)
Q Consensus 303 l~~~~G~L~~v~~~~ 317 (407)
.+.++|+|+++....
T Consensus 317 ~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 317 SVSWNNGVLLIGGEN 331 (346)
T ss_pred EEEcCCEEEEEeccC
Confidence 567899999988653
No 26
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.62 E-value=0.0049 Score=55.40 Aligned_cols=211 Identities=10% Similarity=0.076 Sum_probs=112.1
Q ss_pred CCeEEEEEcCcccceeecCCCCcCCCC-cceEEEEecCCCCCCC-C--CeEEEEEEeccCCCcceEEEEEEeCCCCcccc
Q 015428 170 GNFFYYICNPVTKEWHVLPQPKFFHGP-ETAVALVFEPSALGFS-A--HYEVVCAVPVDQNDVSIIFFEIYSSRSRSWRT 245 (407)
Q Consensus 170 ~~~~~~V~NP~T~~~~~LP~~~~~~~~-~~~~~l~~d~~~~~~~-~--~ykVv~~~~~~~~~~~~~~~~vy~s~t~~W~~ 245 (407)
+.-.+.|.|-.+-+|.++|+--..... ...-+.-|..- |.+ - +=|+..-+.+...........-||.+++.|+.
T Consensus 42 ~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRY--GHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~ 119 (392)
T KOG4693|consen 42 DPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRY--GHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKK 119 (392)
T ss_pred CcceeEEeeccceeEEecCcccccccccCCCCccchhhc--CceEEEEcceEEEEcCccCcccccceeeeeccccccccc
Confidence 446688999999999999983211100 00001111100 000 0 01222222221111234567889999999997
Q ss_pred cCCC-CCCCcccccccceEEECCEEEEEec--------CCcEEEEEcCCCeEeeEe---CCCCCCCCccEEEecCeEEEE
Q 015428 246 TDTI-CSEPDVLKLSINGFYMKGFVYWTSL--------SGAILVFDLKDEQYGILP---LPARSGPYGALTQMHGELCYM 313 (407)
Q Consensus 246 ~~~~-~~~~~~~~~~~~~v~~~G~lYwl~~--------~~~Il~fD~~~e~~~~i~---lP~~~~~~~~l~~~~G~L~~v 313 (407)
.... ..|.. .-..++++++..+|-+.. +..+-+||+.+.+|+.+. .|+.......-..++|+.++.
T Consensus 120 p~v~G~vPga--RDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiF 197 (392)
T KOG4693|consen 120 PEVEGFVPGA--RDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIF 197 (392)
T ss_pred cceeeecCCc--cCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEe
Confidence 6532 11211 123466778888888864 357999999999999985 566554444555667888887
Q ss_pred eeeCCC------------ceEEEEEcCCccceeeEeeeeecccccCcCCcceEEEe-ecCCEEEEe-------c-CCEEE
Q 015428 314 LPQIQD------------GECLIGVYGNLDMSLKCVIPVEHEVLGETFSDCRVLTC-VNSDILIIL-------L-PNKVI 372 (407)
Q Consensus 314 ~~~~~~------------~~w~l~~~~~~~W~~~~~i~l~~~~~~~~~~~~~~~~~-~~g~~lll~-------~-~~~l~ 372 (407)
..+.+. +....-+...+.|...-.-.+ ..+ +-..--+| .+|.+-++. . -..|+
T Consensus 198 GGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~---~P~---GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy 271 (392)
T KOG4693|consen 198 GGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTM---KPG---GRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLY 271 (392)
T ss_pred ccccccCCCccchhhhhcceeEEEeccccccccCCCCCc---CCC---cccccceEEEcceEEEecccchhhhhhhccee
Confidence 654321 111112222344532211111 011 11111123 344433331 1 25699
Q ss_pred EEECCCCeEEEecccCcC
Q 015428 373 AYHVKAQKMQVVSETGTE 390 (407)
Q Consensus 373 ~yd~~t~~~~~l~~~~~~ 390 (407)
.||++|..|..|...|+.
T Consensus 272 ~FdP~t~~W~~I~~~Gk~ 289 (392)
T KOG4693|consen 272 CFDPKTSMWSVISVRGKY 289 (392)
T ss_pred ecccccchheeeeccCCC
Confidence 999999999999887653
No 27
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00011 Score=67.24 Aligned_cols=77 Identities=17% Similarity=0.056 Sum_probs=52.2
Q ss_pred CCCCccceeccCCCCCCC--cchhhhcCCCCccccccCCCCchHHHHHhcCCCCchhhhhhhcccHhhhhhhcCCcccc
Q 015428 30 FDNLPVNTRFLGSTSDAH--PWFAKYANFPGLVKLKKNIGLSDVTMEHVLPFLPAKSLCRFKAVSKEWNRWISSPFLAH 106 (407)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Lpd~lle~IL~rLP~~sl~r~r~VCK~Wr~li~sp~F~~ 106 (407)
+..-|+.++.....++.+ ..-++.+-...+..-..|-.|||++++.||+.||.|+|+++..|||+|+++.++.+...
T Consensus 61 ~~ekp~~~nl~~k~~~~Def~ivrrp~~~~~~npgv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~ 139 (419)
T KOG2120|consen 61 HPEKPPRKNLKSKGSDKDEFVIVRRPKLNRENNPGVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQ 139 (419)
T ss_pred CCCCCCccccccccccccceEEEeccchhcccCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccccee
Confidence 555566555444444322 22222222222222235899999999999999999999999999999999998876553
No 28
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.45 E-value=0.32 Score=49.21 Aligned_cols=200 Identities=11% Similarity=0.080 Sum_probs=111.0
Q ss_pred EEEEEcCcccceeecCCCCcCCCCcceEEEEecCCCCCCCCCeEEEEEEeccCCCcceEEEEEEeCCCCcccccCCCCCC
Q 015428 173 FYYICNPVTKEWHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAVPVDQNDVSIIFFEIYSSRSRSWRTTDTICSE 252 (407)
Q Consensus 173 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~~~~~ykVv~~~~~~~~~~~~~~~~vy~s~t~~W~~~~~~~~~ 252 (407)
.++|+|=.++.|.................+.. -++ +++.++...........+..||..|+.|+.......+
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~-------~~~-~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~ 160 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSA-------VGD-KLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDP 160 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEE-------ECC-eEEEEccccCCCCChhheEeccCCCCcEEEecCcCCC
Confidence 49999999988877654322110000011111 012 3344433321112345789999999999987654331
Q ss_pred CcccccccceEEECCEEEEEec-------CCcEEEEEcCCCeEeeEeCCCC--C-CCCccEEEecCeEEEEeeeC-C---
Q 015428 253 PDVLKLSINGFYMKGFVYWTSL-------SGAILVFDLKDEQYGILPLPAR--S-GPYGALTQMHGELCYMLPQI-Q--- 318 (407)
Q Consensus 253 ~~~~~~~~~~v~~~G~lYwl~~-------~~~Il~fD~~~e~~~~i~lP~~--~-~~~~~l~~~~G~L~~v~~~~-~--- 318 (407)
+ ........+.++-++|.+.. ...+.+||+++.+|..+..... . .....++..+++++++.... +
T Consensus 161 P-~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~ 239 (482)
T KOG0379|consen 161 P-PPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVY 239 (482)
T ss_pred C-CCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCce
Confidence 1 11123455666667777754 2479999999999999864322 1 22446777888888886653 1
Q ss_pred -CceEEEEEcCCccceeeEeeeeecccccCcCCcceEEEeecCC-EEEEe--------cCCEEEEEECCCCeEEEecccC
Q 015428 319 -DGECLIGVYGNLDMSLKCVIPVEHEVLGETFSDCRVLTCVNSD-ILIIL--------LPNKVIAYHVKAQKMQVVSETG 388 (407)
Q Consensus 319 -~~~w~l~~~~~~~W~~~~~i~l~~~~~~~~~~~~~~~~~~~g~-~lll~--------~~~~l~~yd~~t~~~~~l~~~~ 388 (407)
.++|.+... .|.|+...... ..... ....... ..++ ++++. .-..++.||++++.|..+...+
T Consensus 240 l~D~~~ldl~---~~~W~~~~~~g-~~p~~--R~~h~~~-~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 240 LNDVHILDLS---TWEWKLLPTGG-DLPSP--RSGHSLT-VSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred ecceEeeecc---cceeeeccccC-CCCCC--cceeeeE-EECCEEEEEcCCcccccccccccccccccccceeeeeccc
Confidence 467776543 36666322111 11100 0111222 3334 33332 1245889999999999887654
No 29
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=95.86 E-value=0.53 Score=45.34 Aligned_cols=204 Identities=12% Similarity=0.061 Sum_probs=103.4
Q ss_pred eEEEEEcCcccceeecCCCCcCCCCcceEEEEecCCCCCCCCCeEEEEEEecc-CC--Cc-ceEEEEEEeCCCCcccccC
Q 015428 172 FFYYICNPVTKEWHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAVPVD-QN--DV-SIIFFEIYSSRSRSWRTTD 247 (407)
Q Consensus 172 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~~~~~ykVv~~~~~~-~~--~~-~~~~~~vy~s~t~~W~~~~ 247 (407)
..+|++|--+.+|+.+-.|...... ....++.-|. + +-.+.-+... .+ .+ ..-...+|+..|..|..+.
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pR-sshq~va~~s-----~-~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~ 170 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPR-SSHQAVAVPS-----N-ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLE 170 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCC-ccceeEEecc-----C-eEEEeccccCCcchhhhhhhhheeeeeeccchheeec
Confidence 4588999999999987554322111 1111222222 2 2211111111 00 01 2235789999999999886
Q ss_pred CCCCCCcccccccceEEECCEEEEEe------c----CCcEEEEEcCCCeEeeEeCCCC---CCCCccEEEe-cCeEEEE
Q 015428 248 TICSEPDVLKLSINGFYMKGFVYWTS------L----SGAILVFDLKDEQYGILPLPAR---SGPYGALTQM-HGELCYM 313 (407)
Q Consensus 248 ~~~~~~~~~~~~~~~v~~~G~lYwl~------~----~~~Il~fD~~~e~~~~i~lP~~---~~~~~~l~~~-~G~L~~v 313 (407)
....|.+. ...+.|.....|.-+. . -+-+.+||+.+=+|+.+..+-. .....++.+. +|.+++.
T Consensus 171 ~~g~PS~R--SGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vy 248 (521)
T KOG1230|consen 171 FGGGPSPR--SGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVY 248 (521)
T ss_pred cCCCCCCC--ccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEE
Confidence 54222221 1122222222222211 1 1459999999999999975431 1122345555 7888876
Q ss_pred eeeC-------------CCceEEEEEcC--CccceeeEeeeeecccccCcCCcceEEEe-ecCCEEEEe-----------
Q 015428 314 LPQI-------------QDGECLIGVYG--NLDMSLKCVIPVEHEVLGETFSDCRVLTC-VNSDILIIL----------- 366 (407)
Q Consensus 314 ~~~~-------------~~~~w~l~~~~--~~~W~~~~~i~l~~~~~~~~~~~~~~~~~-~~g~~lll~----------- 366 (407)
..+. +.++|.|.-.. ...|.|..+-... +-...-..+ .+++ .++.-+++.
T Consensus 249 GGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g--~kPspRsgf-sv~va~n~kal~FGGV~D~eeeeEs 325 (521)
T KOG1230|consen 249 GGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSG--VKPSPRSGF-SVAVAKNHKALFFGGVCDLEEEEES 325 (521)
T ss_pred cchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCC--CCCCCCCce-eEEEecCCceEEecceecccccchh
Confidence 5542 24688885322 2468887643221 110000011 1111 233333331
Q ss_pred ----cCCEEEEEECCCCeEEEeccc
Q 015428 367 ----LPNKVIAYHVKAQKMQVVSET 387 (407)
Q Consensus 367 ----~~~~l~~yd~~t~~~~~l~~~ 387 (407)
-...|+.||+..++|.+....
T Consensus 326 l~g~F~NDLy~fdlt~nrW~~~qlq 350 (521)
T KOG1230|consen 326 LSGEFFNDLYFFDLTRNRWSEGQLQ 350 (521)
T ss_pred hhhhhhhhhhheecccchhhHhhhc
Confidence 125699999999999877544
No 30
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=95.64 E-value=0.65 Score=47.00 Aligned_cols=134 Identities=16% Similarity=0.143 Sum_probs=77.2
Q ss_pred eEEEEEcCcccceeecCCCCcCC-CCcceEEEEecCCCCCCCCCeEEEEEEeccCCCcceEEEEEEeCCCCcccccCCCC
Q 015428 172 FFYYICNPVTKEWHVLPQPKFFH-GPETAVALVFEPSALGFSAHYEVVCAVPVDQNDVSIIFFEIYSSRSRSWRTTDTIC 250 (407)
Q Consensus 172 ~~~~V~NP~T~~~~~LP~~~~~~-~~~~~~~l~~d~~~~~~~~~ykVv~~~~~~~~~~~~~~~~vy~s~t~~W~~~~~~~ 250 (407)
..++.+|+.|++|..+.+..... ......+.+++ + ||+.++...........++|||.++..|..+....
T Consensus 139 ~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g--------~-~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g 209 (482)
T KOG0379|consen 139 NELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVG--------T-KLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQG 209 (482)
T ss_pred hheEeccCCCCcEEEecCcCCCCCCcccceEEEEC--------C-EEEEECCccCcccceeeeeeeccccccceecccCC
Confidence 47899999999999987643311 11122233333 2 55555544322225678999999999999986542
Q ss_pred CCCcccccccceEEECCEEEEEecC-------CcEEEEEcCCCeEeeEe----CCCCCCCCccEEEecCeEEEEeee
Q 015428 251 SEPDVLKLSINGFYMKGFVYWTSLS-------GAILVFDLKDEQYGILP----LPARSGPYGALTQMHGELCYMLPQ 316 (407)
Q Consensus 251 ~~~~~~~~~~~~v~~~G~lYwl~~~-------~~Il~fD~~~e~~~~i~----lP~~~~~~~~l~~~~G~L~~v~~~ 316 (407)
... ........+.+++.++-+... .-+..||+.+.+|..+. .|.... ...++..+..+.++...
T Consensus 210 ~~P-~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~-~h~~~~~~~~~~l~gG~ 284 (482)
T KOG0379|consen 210 EAP-SPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRS-GHSLTVSGDHLLLFGGG 284 (482)
T ss_pred CCC-CCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcc-eeeeEEECCEEEEEcCC
Confidence 211 111223455566665555431 35999999999998332 222211 22444555566666544
No 31
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=95.57 E-value=0.61 Score=42.32 Aligned_cols=179 Identities=14% Similarity=0.138 Sum_probs=99.2
Q ss_pred CCeeEeecCCCCCCCCCCcc-cCCC---CceEEeecCceEEEeeecc----cCCeEEEEEcCcccceeecCC---CCcCC
Q 015428 126 DPSFISFNQDAYGIPSPSFN-FFPQ---LVNIRTTCNGLVCCQSVFE----VGNFFYYICNPVTKEWHVLPQ---PKFFH 194 (407)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~-~~~~---~~~i~~s~~GLll~~~~~~----~~~~~~~V~NP~T~~~~~LP~---~~~~~ 194 (407)
...+..+|+....|..|... ++|+ ...-+.-.| ...+.+++. .-....++.|-.|.+|+.+-. |+..+
T Consensus 104 CN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn-~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwR 182 (392)
T KOG4693|consen 104 CNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGN-QMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWR 182 (392)
T ss_pred cceeeeeccccccccccceeeecCCccCCceeeEECc-EEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhh
Confidence 35567788877677766653 3443 111111112 222222221 123568899999999998653 23222
Q ss_pred CCcceE-----EEEecCCCCCCCCCeEEEEEEeccCCCcceEEEEEEeCCCCcccccCCCCCCCcccccccceEEECCEE
Q 015428 195 GPETAV-----ALVFEPSALGFSAHYEVVCAVPVDQNDVSIIFFEIYSSRSRSWRTTDTICSEPDVLKLSINGFYMKGFV 269 (407)
Q Consensus 195 ~~~~~~-----~l~~d~~~~~~~~~ykVv~~~~~~~~~~~~~~~~vy~s~t~~W~~~~~~~~~~~~~~~~~~~v~~~G~l 269 (407)
.+..+. ...|.-..+. .+.|. ..++...-.+.++|.+|++|......+... .-....+....||.+
T Consensus 183 DFH~a~~~~~~MYiFGGR~D~-~gpfH-------s~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P-~GRRSHS~fvYng~~ 253 (392)
T KOG4693|consen 183 DFHTASVIDGMMYIFGGRSDE-SGPFH-------SIHEQYCDTIMALDLATGAWTRTPENTMKP-GGRRSHSTFVYNGKM 253 (392)
T ss_pred hhhhhhhccceEEEecccccc-CCCcc-------chhhhhcceeEEEeccccccccCCCCCcCC-CcccccceEEEcceE
Confidence 221111 1112211100 11121 011234557888999999998764321111 111233566779999
Q ss_pred EEEecC--------CcEEEEEcCCCeEeeEeC----CCCCCCCccEEEecCeEEEEee
Q 015428 270 YWTSLS--------GAILVFDLKDEQYGILPL----PARSGPYGALTQMHGELCYMLP 315 (407)
Q Consensus 270 Ywl~~~--------~~Il~fD~~~e~~~~i~l----P~~~~~~~~l~~~~G~L~~v~~ 315 (407)
|.+..- ..+-.||+.+..|+.|.. |.. ..+.+-++++|++++...
T Consensus 254 Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~a-RRRqC~~v~g~kv~LFGG 310 (392)
T KOG4693|consen 254 YMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSA-RRRQCSVVSGGKVYLFGG 310 (392)
T ss_pred EEecccchhhhhhhcceeecccccchheeeeccCCCCCc-ccceeEEEECCEEEEecC
Confidence 998751 469999999999999963 332 234577888999998754
No 32
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.43 E-value=0.0068 Score=56.32 Aligned_cols=41 Identities=39% Similarity=0.626 Sum_probs=37.3
Q ss_pred CCCc----hHHHHHhcCCCCchhhhhhhcccHhhhhhhcCCcccc
Q 015428 66 IGLS----DVTMEHVLPFLPAKSLCRFKAVSKEWNRWISSPFLAH 106 (407)
Q Consensus 66 ~~Lp----d~lle~IL~rLP~~sl~r~r~VCK~Wr~li~sp~F~~ 106 (407)
..|| |.+.|.||+.|...+|..|..|||+|+++++++...+
T Consensus 76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WK 120 (499)
T KOG0281|consen 76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWK 120 (499)
T ss_pred HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHH
Confidence 4688 9999999999999999999999999999999986554
No 33
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.75 E-value=1 Score=41.22 Aligned_cols=125 Identities=19% Similarity=0.222 Sum_probs=79.5
Q ss_pred ceEEeecCceEEEeeecccCCeEEEEEcCcccceeecCCCCcCCCCcceEEEEecCCCCCCCCCeEEEEEEeccCCCcce
Q 015428 151 VNIRTTCNGLVCCQSVFEVGNFFYYICNPVTKEWHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAVPVDQNDVSI 230 (407)
Q Consensus 151 ~~i~~s~~GLll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~~~~~ykVv~~~~~~~~~~~~ 230 (407)
.-|++.-+|-|.+... ....+...||.++.-..+|.|.....- .=.+..||. ++-. +. ....
T Consensus 192 yGi~atpdGsvwyasl---agnaiaridp~~~~aev~p~P~~~~~g--sRriwsdpi-----g~~w---it-----twg~ 253 (353)
T COG4257 192 YGICATPDGSVWYASL---AGNAIARIDPFAGHAEVVPQPNALKAG--SRRIWSDPI-----GRAW---IT-----TWGT 253 (353)
T ss_pred cceEECCCCcEEEEec---cccceEEcccccCCcceecCCCccccc--ccccccCcc-----CcEE---Ee-----ccCC
Confidence 4567777888877642 345577889999998999988653211 112334443 2222 22 1133
Q ss_pred EEEEEEeCCCCcccccCCCCCCCcccccccceEEECC-EEEEEec--CCcEEEEEcCCCeEeeEeCCCCCC
Q 015428 231 IFFEIYSSRSRSWRTTDTICSEPDVLKLSINGFYMKG-FVYWTSL--SGAILVFDLKDEQYGILPLPARSG 298 (407)
Q Consensus 231 ~~~~vy~s~t~~W~~~~~~~~~~~~~~~~~~~v~~~G-~lYwl~~--~~~Il~fD~~~e~~~~i~lP~~~~ 298 (407)
-.+..|++.+.+|.+-...... ....+.+++. -.-|++. .+.|+.||+++++|+++++|....
T Consensus 254 g~l~rfdPs~~sW~eypLPgs~-----arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~p~pr~n~ 319 (353)
T COG4257 254 GSLHRFDPSVTSWIEYPLPGSK-----ARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLPIPRPNS 319 (353)
T ss_pred ceeeEeCcccccceeeeCCCCC-----CCcceeeeccCCcEEeeccccCceeecCcccceEEEecCCCCCC
Confidence 4788999999999976532111 1224455542 3346654 689999999999999999997643
No 34
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=93.48 E-value=2.3 Score=41.00 Aligned_cols=129 Identities=11% Similarity=0.084 Sum_probs=73.0
Q ss_pred ceEEeecCceEEEeeecccCCeEEEEEcCcccceeecCCCCcCCCCcceEEEEecCCCCCCCCCeEEEEEEeccCCCc--
Q 015428 151 VNIRTTCNGLVCCQSVFEVGNFFYYICNPVTKEWHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAVPVDQNDV-- 228 (407)
Q Consensus 151 ~~i~~s~~GLll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~~~~~ykVv~~~~~~~~~~-- 228 (407)
..+.+-.+..|++.. .....+|+++-|+....+|.+....... +.+..+ + +|.++........
T Consensus 69 ~~F~al~gskIv~~d----~~~~t~vyDt~t~av~~~P~l~~pk~~p--isv~VG-------~--~LY~m~~~~~~~~~~ 133 (342)
T PF07893_consen 69 MDFFALHGSKIVAVD----QSGRTLVYDTDTRAVATGPRLHSPKRCP--ISVSVG-------D--KLYAMDRSPFPEPAG 133 (342)
T ss_pred eEEEEecCCeEEEEc----CCCCeEEEECCCCeEeccCCCCCCCcce--EEEEeC-------C--eEEEeeccCcccccc
Confidence 344444444455543 2356889999999999999866533222 222211 2 2444433321100
Q ss_pred ----ceEEEEEEe--------CCCCcccccCCCCCCCcccc------cccceEEECCEEEEEecCC---cEEEEEcCCCe
Q 015428 229 ----SIIFFEIYS--------SRSRSWRTTDTICSEPDVLK------LSINGFYMKGFVYWTSLSG---AILVFDLKDEQ 287 (407)
Q Consensus 229 ----~~~~~~vy~--------s~t~~W~~~~~~~~~~~~~~------~~~~~v~~~G~lYwl~~~~---~Il~fD~~~e~ 287 (407)
...++-+|+ ..+.+|+..+.+| +.... .....|. +|.--|++..+ .-.+||+.+.+
T Consensus 134 ~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~PP--f~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~~GTysfDt~~~~ 210 (342)
T PF07893_consen 134 RPDFPCFEALVYRPPPDDPSPEESWSWRSLPPPP--FVRDRRYSDYRITSYAVV-DGRTIFVSVNGRRWGTYSFDTESHE 210 (342)
T ss_pred CccceeEEEeccccccccccCCCcceEEcCCCCC--ccccCCcccceEEEEEEe-cCCeEEEEecCCceEEEEEEcCCcc
Confidence 022333333 3345777766533 22211 3345666 89888886543 69999999999
Q ss_pred EeeE---eCCCCC
Q 015428 288 YGIL---PLPARS 297 (407)
Q Consensus 288 ~~~i---~lP~~~ 297 (407)
|+.. .||...
T Consensus 211 W~~~GdW~LPF~G 223 (342)
T PF07893_consen 211 WRKHGDWMLPFHG 223 (342)
T ss_pred eeeccceecCcCC
Confidence 9888 688754
No 35
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=93.48 E-value=3.2 Score=40.03 Aligned_cols=119 Identities=10% Similarity=0.049 Sum_probs=71.6
Q ss_pred CCEEEEEecCCcEEEEEcCCCeEeeEeCCCCCCCCccEEEecCeEEEEeeeCCC----c----eEEEEEc--------CC
Q 015428 266 KGFVYWTSLSGAILVFDLKDEQYGILPLPARSGPYGALTQMHGELCYMLPQIQD----G----ECLIGVY--------GN 329 (407)
Q Consensus 266 ~G~lYwl~~~~~Il~fD~~~e~~~~i~lP~~~~~~~~l~~~~G~L~~v~~~~~~----~----~w~l~~~--------~~ 329 (407)
+.++..+...+..+.||.++......|...........+..+|+|+++...... . ......+ ..
T Consensus 76 gskIv~~d~~~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~ 155 (342)
T PF07893_consen 76 GSKIVAVDQSGRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPE 155 (342)
T ss_pred CCeEEEEcCCCCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCC
Confidence 556666666678999999998887554322223334455568889988765321 0 2222222 23
Q ss_pred ccceeeEeeeeec-ccccCcCCc---ceEEEeecCCEEEEecC-C--EEEEEECCCCeEEEeccc
Q 015428 330 LDMSLKCVIPVEH-EVLGETFSD---CRVLTCVNSDILIILLP-N--KVIAYHVKAQKMQVVSET 387 (407)
Q Consensus 330 ~~W~~~~~i~l~~-~~~~~~~~~---~~~~~~~~g~~lll~~~-~--~l~~yd~~t~~~~~l~~~ 387 (407)
..|+|+. +++ .+....... +...++.+|.-|++... . .-|+||.++.+|+++.+-
T Consensus 156 ~~w~W~~---LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~GdW 217 (342)
T PF07893_consen 156 ESWSWRS---LPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHGDW 217 (342)
T ss_pred CcceEEc---CCCCCccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeeccce
Confidence 6788876 432 222211011 22333347888888654 4 799999999999999653
No 36
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=92.96 E-value=0.028 Score=51.92 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=37.5
Q ss_pred CCCCchHHHHHhcCCCC-----chhhhhhhcccHhhhhhhcCCccccc
Q 015428 65 NIGLSDVTMEHVLPFLP-----AKSLCRFKAVSKEWNRWISSPFLAHL 107 (407)
Q Consensus 65 ~~~Lpd~lle~IL~rLP-----~~sl~r~r~VCK~Wr~li~sp~F~~~ 107 (407)
...|||+++.+||.+.= ..+|.++.+|||.|+-...+|.|.+.
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~ 154 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRL 154 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHH
Confidence 36799999988997654 59999999999999999999998865
No 37
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=92.83 E-value=1.6 Score=43.20 Aligned_cols=93 Identities=11% Similarity=0.057 Sum_probs=50.6
Q ss_pred eEEEEEcCcccceeecCCCCcCCCCcceEEEEecCCCCCCCCCeEEEEEEeccCCCcceEEEEEEeCCCC--cccccCCC
Q 015428 172 FFYYICNPVTKEWHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAVPVDQNDVSIIFFEIYSSRSR--SWRTTDTI 249 (407)
Q Consensus 172 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~~~~~ykVv~~~~~~~~~~~~~~~~vy~s~t~--~W~~~~~~ 249 (407)
.++.|+|-.|++|. +|....+.. ..+.++||-.. .-||++++.+- +++.+.-+.|.+... .|+.+...
T Consensus 57 DELHvYNTatnqWf-~PavrGDiP-pgcAA~Gfvcd------GtrilvFGGMv--EYGkYsNdLYELQasRWeWkrlkp~ 126 (830)
T KOG4152|consen 57 DELHVYNTATNQWF-APAVRGDIP-PGCAAFGFVCD------GTRILVFGGMV--EYGKYSNDLYELQASRWEWKRLKPK 126 (830)
T ss_pred hhhhhhccccceee-cchhcCCCC-CchhhcceEec------CceEEEEccEe--eeccccchHHHhhhhhhhHhhcCCC
Confidence 67899999999995 454332211 12234444322 22677776554 445556677776664 56665543
Q ss_pred CCCC--cccc-cccceEEECCEEEEEec
Q 015428 250 CSEP--DVLK-LSINGFYMKGFVYWTSL 274 (407)
Q Consensus 250 ~~~~--~~~~-~~~~~v~~~G~lYwl~~ 274 (407)
.... +..+ ...+-+.++.+.|.+..
T Consensus 127 ~p~nG~pPCPRlGHSFsl~gnKcYlFGG 154 (830)
T KOG4152|consen 127 TPKNGPPPCPRLGHSFSLVGNKCYLFGG 154 (830)
T ss_pred CCCCCCCCCCccCceeEEeccEeEEecc
Confidence 2211 1111 23345566778887753
No 38
>PF13964 Kelch_6: Kelch motif
Probab=92.76 E-value=0.34 Score=32.03 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=28.0
Q ss_pred EeecCceEEEeeecc---cCCeEEEEEcCcccceeecCCCCc
Q 015428 154 RTTCNGLVCCQSVFE---VGNFFYYICNPVTKEWHVLPQPKF 192 (407)
Q Consensus 154 ~~s~~GLll~~~~~~---~~~~~~~V~NP~T~~~~~LP~~~~ 192 (407)
+.+.+|-|.+.++.. .....+.++||.|++|..+|+++.
T Consensus 7 ~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 7 AVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred EEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCC
Confidence 345666666655431 234778999999999999998764
No 39
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=91.79 E-value=9.1 Score=34.10 Aligned_cols=187 Identities=14% Similarity=0.099 Sum_probs=96.1
Q ss_pred cCceEEEeeecccCCeEEEEEcCcccceeecCCCCcCCCCcceEEEEecCCCCCCCCCeEEEEEEeccCCCcceEEEEEE
Q 015428 157 CNGLVCCQSVFEVGNFFYYICNPVTKEWHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAVPVDQNDVSIIFFEIY 236 (407)
Q Consensus 157 ~~GLll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~~~~~ykVv~~~~~~~~~~~~~~~~vy 236 (407)
.+|.+++.. ....++.+|+.||+...--..+...... ... + .=+|++... +. .+..+
T Consensus 35 ~~~~v~~~~----~~~~l~~~d~~tG~~~W~~~~~~~~~~~---~~~-~--------~~~v~v~~~----~~---~l~~~ 91 (238)
T PF13360_consen 35 DGGRVYVAS----GDGNLYALDAKTGKVLWRFDLPGPISGA---PVV-D--------GGRVYVGTS----DG---SLYAL 91 (238)
T ss_dssp ETTEEEEEE----TTSEEEEEETTTSEEEEEEECSSCGGSG---EEE-E--------TTEEEEEET----TS---EEEEE
T ss_pred eCCEEEEEc----CCCEEEEEECCCCCEEEEeeccccccce---eee-c--------ccccccccc----ee---eeEec
Confidence 577777753 5678999999999864322221110011 111 1 113333321 11 66777
Q ss_pred eCCCC--cccc-cCCCCCCCcccccccceEEECCEEEEEecCCcEEEEEcCCC--eEeeEeCCCCC--CC-------Ccc
Q 015428 237 SSRSR--SWRT-TDTICSEPDVLKLSINGFYMKGFVYWTSLSGAILVFDLKDE--QYGILPLPARS--GP-------YGA 302 (407)
Q Consensus 237 ~s~t~--~W~~-~~~~~~~~~~~~~~~~~v~~~G~lYwl~~~~~Il~fD~~~e--~~~~i~lP~~~--~~-------~~~ 302 (407)
+..++ .|+. ....+ ...........+.++.+|.....+.|.++|+.+. .|.. +.+... .. ...
T Consensus 92 d~~tG~~~W~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~-~~~~~~~~~~~~~~~~~~~~ 168 (238)
T PF13360_consen 92 DAKTGKVLWSIYLTSSP--PAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKY-PVGEPRGSSPISSFSDINGS 168 (238)
T ss_dssp ETTTSCEEEEEEE-SSC--TCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEE-ESSTT-SS--EEEETTEEEE
T ss_pred ccCCcceeeeecccccc--ccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEe-ecCCCCCCcceeeecccccc
Confidence 76666 5883 43311 1111122344555788888887899999999865 4443 333221 11 123
Q ss_pred EEEecCeEEEEeeeCCCceEEEEEcCCccceeeEeeeeecccccCcCCcceEEEeecCCEEEEec-CCEEEEEECCCCeE
Q 015428 303 LTQMHGELCYMLPQIQDGECLIGVYGNLDMSLKCVIPVEHEVLGETFSDCRVLTCVNSDILIILL-PNKVIAYHVKAQKM 381 (407)
Q Consensus 303 l~~~~G~L~~v~~~~~~~~w~l~~~~~~~W~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~lll~~-~~~l~~yd~~t~~~ 381 (407)
+...+|.+++.... ..+..+ +...++-.|... +. .........++.|++.+ ...++.+|++|++.
T Consensus 169 ~~~~~~~v~~~~~~--g~~~~~-d~~tg~~~w~~~--~~---------~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 169 PVISDGRVYVSSGD--GRVVAV-DLATGEKLWSKP--IS---------GIYSLPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp EECCTTEEEEECCT--SSEEEE-ETTTTEEEEEEC--SS----------ECECEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred eEEECCEEEEEcCC--CeEEEE-ECCCCCEEEEec--CC---------CccCCceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 33345655554444 234444 444443112111 11 11111224677777765 78999999999996
Q ss_pred EE
Q 015428 382 QV 383 (407)
Q Consensus 382 ~~ 383 (407)
..
T Consensus 235 ~W 236 (238)
T PF13360_consen 235 VW 236 (238)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 40
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=91.20 E-value=16 Score=35.68 Aligned_cols=84 Identities=12% Similarity=0.165 Sum_probs=57.0
Q ss_pred EEEEEEeCCCCcccccCCCCCCCcccccccceEEEC-CEEEEEecC------------CcEEEEEcCCCeEeeEeCCCCC
Q 015428 231 IFFEIYSSRSRSWRTTDTICSEPDVLKLSINGFYMK-GFVYWTSLS------------GAILVFDLKDEQYGILPLPARS 297 (407)
Q Consensus 231 ~~~~vy~s~t~~W~~~~~~~~~~~~~~~~~~~v~~~-G~lYwl~~~------------~~Il~fD~~~e~~~~i~lP~~~ 297 (407)
....+|+.+++.|+.+..+..|.+. .....|.+- |.+|.+... .-+-.||+.+.+|..+.++-..
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pR--sshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~P 175 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPR--SSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGP 175 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCC--ccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCC
Confidence 3578899999999998765333322 233455554 655544431 2488999999999999887643
Q ss_pred C--CCccEEEecCeEEEEeee
Q 015428 298 G--PYGALTQMHGELCYMLPQ 316 (407)
Q Consensus 298 ~--~~~~l~~~~G~L~~v~~~ 316 (407)
. ....++....+|.+...-
T Consensus 176 S~RSGHRMvawK~~lilFGGF 196 (521)
T KOG1230|consen 176 SPRSGHRMVAWKRQLILFGGF 196 (521)
T ss_pred CCCccceeEEeeeeEEEEcce
Confidence 2 234788888888887653
No 41
>PF13964 Kelch_6: Kelch motif
Probab=90.75 E-value=0.4 Score=31.69 Aligned_cols=36 Identities=11% Similarity=0.149 Sum_probs=25.2
Q ss_pred EEEEEEeccCCCcceEEEEEEeCCCCcccccCCCCC
Q 015428 216 EVVCAVPVDQNDVSIIFFEIYSSRSRSWRTTDTICS 251 (407)
Q Consensus 216 kVv~~~~~~~~~~~~~~~~vy~s~t~~W~~~~~~~~ 251 (407)
+|.+++...........+++||.+|++|+.+++.+.
T Consensus 13 ~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 13 KIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred EEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCC
Confidence 566665543222345689999999999999886543
No 42
>smart00612 Kelch Kelch domain.
Probab=90.64 E-value=0.81 Score=29.21 Aligned_cols=22 Identities=14% Similarity=0.433 Sum_probs=17.7
Q ss_pred ceEEEEEEeCCCCcccccCCCC
Q 015428 229 SIIFFEIYSSRSRSWRTTDTIC 250 (407)
Q Consensus 229 ~~~~~~vy~s~t~~W~~~~~~~ 250 (407)
....+++||++++.|+..+..+
T Consensus 13 ~~~~v~~yd~~~~~W~~~~~~~ 34 (47)
T smart00612 13 RLKSVEVYDPETNKWTPLPSMP 34 (47)
T ss_pred eeeeEEEECCCCCeEccCCCCC
Confidence 3457899999999999887543
No 43
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=89.79 E-value=0.57 Score=30.34 Aligned_cols=33 Identities=15% Similarity=0.311 Sum_probs=25.1
Q ss_pred EEEEEEeccCCCcceEEEEEEeCCCCcccccCC
Q 015428 216 EVVCAVPVDQNDVSIIFFEIYSSRSRSWRTTDT 248 (407)
Q Consensus 216 kVv~~~~~~~~~~~~~~~~vy~s~t~~W~~~~~ 248 (407)
+|++++...........+++||..++.|+.+++
T Consensus 13 ~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 45 (47)
T PF01344_consen 13 KIYVIGGYDGNNQPTNSVEVYDPETNTWEELPP 45 (47)
T ss_dssp EEEEEEEBESTSSBEEEEEEEETTTTEEEEEEE
T ss_pred EEEEEeeecccCceeeeEEEEeCCCCEEEEcCC
Confidence 566666655434567899999999999998764
No 44
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=89.22 E-value=17 Score=32.92 Aligned_cols=202 Identities=11% Similarity=0.094 Sum_probs=106.8
Q ss_pred eecCceEEEeeecccCCeEEEEEcCcccceeecCCCCcCCCCcceEEEEecCCCCCCCCCeEEEEEEeccCCCcceEEEE
Q 015428 155 TTCNGLVCCQSVFEVGNFFYYICNPVTKEWHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAVPVDQNDVSIIFFE 234 (407)
Q Consensus 155 ~s~~GLll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~~~~~ykVv~~~~~~~~~~~~~~~~ 234 (407)
...+|.|++.. ....+++.++|.+++...+..+. ..++.++.. .+ ++++.... ...
T Consensus 8 d~~~g~l~~~D---~~~~~i~~~~~~~~~~~~~~~~~-------~~G~~~~~~----~g--~l~v~~~~--------~~~ 63 (246)
T PF08450_consen 8 DPRDGRLYWVD---IPGGRIYRVDPDTGEVEVIDLPG-------PNGMAFDRP----DG--RLYVADSG--------GIA 63 (246)
T ss_dssp ETTTTEEEEEE---TTTTEEEEEETTTTEEEEEESSS-------EEEEEEECT----TS--EEEEEETT--------CEE
T ss_pred ECCCCEEEEEE---cCCCEEEEEECCCCeEEEEecCC-------CceEEEEcc----CC--EEEEEEcC--------ceE
Confidence 34467777766 35678999999999887655433 245566632 22 33333321 346
Q ss_pred EEeCCCCcccccCCCCCCC-cccccccceEEECCEEEEEecC---------CcEEEEEcCCCeEeeEeCCCCCCCCccEE
Q 015428 235 IYSSRSRSWRTTDTICSEP-DVLKLSINGFYMKGFVYWTSLS---------GAILVFDLKDEQYGILPLPARSGPYGALT 304 (407)
Q Consensus 235 vy~s~t~~W~~~~~~~~~~-~~~~~~~~~v~~~G~lYwl~~~---------~~Il~fD~~~e~~~~i~lP~~~~~~~~l~ 304 (407)
+++..++.++.....+... .....+.-.+--+|.+|+-... +.|..+|.. .+...+.-... .......
T Consensus 64 ~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~-~pNGi~~ 141 (246)
T PF08450_consen 64 VVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLG-FPNGIAF 141 (246)
T ss_dssp EEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEES-SEEEEEE
T ss_pred EEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcc-cccceEE
Confidence 6699999888765432111 1111122233447897775431 469999999 55444321110 0011222
Q ss_pred EecCeEEEEeeeCCCceEEEEEcCC-ccceeeEee-eeecccccCcCCcceEEEeecCCEEEEe--cCCEEEEEECCCCe
Q 015428 305 QMHGELCYMLPQIQDGECLIGVYGN-LDMSLKCVI-PVEHEVLGETFSDCRVLTCVNSDILIIL--LPNKVIAYHVKAQK 380 (407)
Q Consensus 305 ~~~G~L~~v~~~~~~~~w~l~~~~~-~~W~~~~~i-~l~~~~~~~~~~~~~~~~~~~g~~lll~--~~~~l~~yd~~t~~ 380 (407)
.-+|+..++.......+|.+..... ..+.-++.+ .++ + ..+....+++...+.|++. ...++..||++.+.
T Consensus 142 s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~----~-~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~ 216 (246)
T PF08450_consen 142 SPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFP----G-GPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKL 216 (246)
T ss_dssp ETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-S----S-SSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCE
T ss_pred CCcchheeecccccceeEEEeccccccceeeeeeEEEcC----C-CCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccE
Confidence 2356655555544566787755432 223333322 221 1 0123456666544445543 56899999999777
Q ss_pred EEEeccc
Q 015428 381 MQVVSET 387 (407)
Q Consensus 381 ~~~l~~~ 387 (407)
++.+...
T Consensus 217 ~~~i~~p 223 (246)
T PF08450_consen 217 LREIELP 223 (246)
T ss_dssp EEEEE-S
T ss_pred EEEEcCC
Confidence 7777755
No 45
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=88.27 E-value=2.3 Score=34.65 Aligned_cols=66 Identities=15% Similarity=0.234 Sum_probs=46.7
Q ss_pred CcEEEEEcCCC--eEeeEeCCCCCC-------------CCccEEEecCeEEEEeeeCC-----------CceEEEEEc--
Q 015428 276 GAILVFDLKDE--QYGILPLPARSG-------------PYGALTQMHGELCYMLPQIQ-----------DGECLIGVY-- 327 (407)
Q Consensus 276 ~~Il~fD~~~e--~~~~i~lP~~~~-------------~~~~l~~~~G~L~~v~~~~~-----------~~~w~l~~~-- 327 (407)
..|+..|+-.+ .++.|++|.... ....++..+|+|.+|..... ...|++...
T Consensus 6 ~GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~ 85 (131)
T PF07762_consen 6 RGILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEG 85 (131)
T ss_pred CCEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCC
Confidence 56888998765 778899987431 23468889999999987642 246777664
Q ss_pred CCccceeeEeeeee
Q 015428 328 GNLDMSLKCVIPVE 341 (407)
Q Consensus 328 ~~~~W~~~~~i~l~ 341 (407)
+..+|...+.+.+.
T Consensus 86 ~~~~W~~d~~v~~~ 99 (131)
T PF07762_consen 86 SSWEWKKDCEVDLS 99 (131)
T ss_pred CCCCEEEeEEEEhh
Confidence 44678887777764
No 46
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=87.10 E-value=1.4 Score=28.45 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=27.7
Q ss_pred cceEEECCEEEEEecC-------CcEEEEEcCCCeEeeEe
Q 015428 260 INGFYMKGFVYWTSLS-------GAILVFDLKDEQYGILP 292 (407)
Q Consensus 260 ~~~v~~~G~lYwl~~~-------~~Il~fD~~~e~~~~i~ 292 (407)
...+.++|.+|-++.. ..+..||+.+.+|..++
T Consensus 5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 4678899999999752 47999999999998874
No 47
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.97 E-value=30 Score=33.06 Aligned_cols=83 Identities=19% Similarity=0.253 Sum_probs=53.4
Q ss_pred EEEEEEeCCCCcccccCCCCCCCcccccccceEEECC-EEEEEec-----------------------------------
Q 015428 231 IFFEIYSSRSRSWRTTDTICSEPDVLKLSINGFYMKG-FVYWTSL----------------------------------- 274 (407)
Q Consensus 231 ~~~~vy~s~t~~W~~~~~~~~~~~~~~~~~~~v~~~G-~lYwl~~----------------------------------- 274 (407)
..++.|++.+++|.......+.. + ....++..+| .+|++..
T Consensus 113 nd~Y~y~p~~nsW~kl~t~sP~g--l-~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~ 189 (381)
T COG3055 113 NDAYRYDPSTNSWHKLDTRSPTG--L-VGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKA 189 (381)
T ss_pred eeeEEecCCCChhheeccccccc--c-ccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCH
Confidence 46789999999999887542211 1 2334444555 7776632
Q ss_pred -----CCcEEEEEcCCCeEeeEe-CCCCCCCCccEEEecCeEEEEeee
Q 015428 275 -----SGAILVFDLKDEQYGILP-LPARSGPYGALTQMHGELCYMLPQ 316 (407)
Q Consensus 275 -----~~~Il~fD~~~e~~~~i~-lP~~~~~~~~l~~~~G~L~~v~~~ 316 (407)
...+++||+.+++|+..- .|.-......++.-+++|.++...
T Consensus 190 ~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGE 237 (381)
T COG3055 190 EDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGE 237 (381)
T ss_pred HHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcce
Confidence 136999999999999985 665433222334445568887654
No 48
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=85.07 E-value=31 Score=31.64 Aligned_cols=122 Identities=12% Similarity=0.087 Sum_probs=67.2
Q ss_pred ccceEEECCEEEEEec-CCcEEEEEcCCCeEe-eEeCCCCCCC-----------CccEEEecCeEEEEeeeCCCc-eEEE
Q 015428 259 SINGFYMKGFVYWTSL-SGAILVFDLKDEQYG-ILPLPARSGP-----------YGALTQMHGELCYMLPQIQDG-ECLI 324 (407)
Q Consensus 259 ~~~~v~~~G~lYwl~~-~~~Il~fD~~~e~~~-~i~lP~~~~~-----------~~~l~~~~G~L~~v~~~~~~~-~w~l 324 (407)
...-|+.||.+|+-.. +..|+.||+.++.-. ...+|..... ...+++=+..|.++....+.. .+++
T Consensus 71 GtG~vVYngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivv 150 (250)
T PF02191_consen 71 GTGHVVYNGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVV 150 (250)
T ss_pred cCCeEEECCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEE
Confidence 4466788999999654 689999999999887 7788865321 123455556666666554322 3444
Q ss_pred EEcCCccceeeEeeeeecccccCcCCcceEEEeecCCEEEEe-c-----CCEEEEEECCCCeEEEecc
Q 015428 325 GVYGNLDMSLKCVIPVEHEVLGETFSDCRVLTCVNSDILIIL-L-----PNKVIAYHVKAQKMQVVSE 386 (407)
Q Consensus 325 ~~~~~~~W~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~lll~-~-----~~~l~~yd~~t~~~~~l~~ 386 (407)
...+...-...++++.. +.... ..=+|.-.++|+.. + ..-.+.||..+++-+.+..
T Consensus 151 skld~~tL~v~~tw~T~--~~k~~----~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i 212 (250)
T PF02191_consen 151 SKLDPETLSVEQTWNTS--YPKRS----AGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSI 212 (250)
T ss_pred EeeCcccCceEEEEEec--cCchh----hcceeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceee
Confidence 33333222333333321 11110 01123222444432 1 1236788888887766553
No 49
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=84.91 E-value=2.7 Score=27.51 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=28.1
Q ss_pred cceEEECCEEEEEecC---------CcEEEEEcCCCeEeeEeCC
Q 015428 260 INGFYMKGFVYWTSLS---------GAILVFDLKDEQYGILPLP 294 (407)
Q Consensus 260 ~~~v~~~G~lYwl~~~---------~~Il~fD~~~e~~~~i~lP 294 (407)
...+.++|+||.+... ..+-.||+++.+|+.++.+
T Consensus 5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred eEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 3578889999998653 4699999999999987643
No 50
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=83.48 E-value=34 Score=30.88 Aligned_cols=114 Identities=11% Similarity=0.163 Sum_probs=64.1
Q ss_pred ecCceEEEeeecccCCeEEEEEcCcccceeecCCCCcCCCCc-ceEEEEecCCCCCCCCCeEEEEEEeccCCCcceEEEE
Q 015428 156 TCNGLVCCQSVFEVGNFFYYICNPVTKEWHVLPQPKFFHGPE-TAVALVFEPSALGFSAHYEVVCAVPVDQNDVSIIFFE 234 (407)
Q Consensus 156 s~~GLll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~-~~~~l~~d~~~~~~~~~ykVv~~~~~~~~~~~~~~~~ 234 (407)
-.+|--|+..+ ....+-+|||..+...+-=.. ++.. ..+++.+|.+ |+-..+ ..-.+.
T Consensus 26 N~dGnY~ltcG---sdrtvrLWNp~rg~liktYsg---hG~EVlD~~~s~Dns--------kf~s~G-------gDk~v~ 84 (307)
T KOG0316|consen 26 NVDGNYCLTCG---SDRTVRLWNPLRGALIKTYSG---HGHEVLDAALSSDNS--------KFASCG-------GDKAVQ 84 (307)
T ss_pred ccCCCEEEEcC---CCceEEeecccccceeeeecC---CCceeeecccccccc--------ccccCC-------CCceEE
Confidence 34566666553 446788999999876543221 1111 1233344432 221111 234788
Q ss_pred EEeCCCCc----ccccCCCCCCCcccc-cccceEEECCEEEEEecCCcEEEEEcCCCeEeeEeCCCCCC
Q 015428 235 IYSSRSRS----WRTTDTICSEPDVLK-LSINGFYMKGFVYWTSLSGAILVFDLKDEQYGILPLPARSG 298 (407)
Q Consensus 235 vy~s~t~~----W~~~~~~~~~~~~~~-~~~~~v~~~G~lYwl~~~~~Il~fD~~~e~~~~i~lP~~~~ 298 (407)
++|-.||. |+..... ..... ...++|.+.|.+ +..+-++|-.+..+..|+.=....
T Consensus 85 vwDV~TGkv~Rr~rgH~aq---VNtV~fNeesSVv~Sgsf-----D~s~r~wDCRS~s~ePiQildea~ 145 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQ---VNTVRFNEESSVVASGSF-----DSSVRLWDCRSRSFEPIQILDEAK 145 (307)
T ss_pred EEEcccCeeeeecccccce---eeEEEecCcceEEEeccc-----cceeEEEEcccCCCCccchhhhhc
Confidence 88988874 6644321 11111 123566666654 678999999999998888665544
No 51
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=82.65 E-value=50 Score=32.26 Aligned_cols=108 Identities=10% Similarity=0.064 Sum_probs=59.7
Q ss_pred ccceEEECCEEEEEecCCcEEEEEcCCC--eEeeEeCCCCCCCCccEEEecCeEEEEeeeCCCceEEEEEc-CCccceee
Q 015428 259 SINGFYMKGFVYWTSLSGAILVFDLKDE--QYGILPLPARSGPYGALTQMHGELCYMLPQIQDGECLIGVY-GNLDMSLK 335 (407)
Q Consensus 259 ~~~~v~~~G~lYwl~~~~~Il~fD~~~e--~~~~i~lP~~~~~~~~l~~~~G~L~~v~~~~~~~~w~l~~~-~~~~W~~~ 335 (407)
...++..+|.+|..+.++.+.++|+.+. .|+. +.+. ...+...+|+|++.... ..+..+... +...|...
T Consensus 249 ~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~-~~~~----~~~~~~~~~~vy~~~~~--g~l~ald~~tG~~~W~~~ 321 (394)
T PRK11138 249 DTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR-EYGS----VNDFAVDGGRIYLVDQN--DRVYALDTRGGVELWSQS 321 (394)
T ss_pred CCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee-cCCC----ccCcEEECCEEEEEcCC--CeEEEEECCCCcEEEccc
Confidence 3567889999999888899999999864 5754 2221 11244556777776543 333333321 11223211
Q ss_pred EeeeeecccccCcCCcceEEEeecCCEEEE-ecCCEEEEEECCCCeEEEe
Q 015428 336 CVIPVEHEVLGETFSDCRVLTCVNSDILII-LLPNKVIAYHVKAQKMQVV 384 (407)
Q Consensus 336 ~~i~l~~~~~~~~~~~~~~~~~~~g~~lll-~~~~~l~~yd~~t~~~~~l 384 (407)
. +. +. ....|+ +. ++.|++ ..++.++.+|.+++++..-
T Consensus 322 ~---~~----~~--~~~sp~-v~-~g~l~v~~~~G~l~~ld~~tG~~~~~ 360 (394)
T PRK11138 322 D---LL----HR--LLTAPV-LY-NGYLVVGDSEGYLHWINREDGRFVAQ 360 (394)
T ss_pred c---cC----CC--cccCCE-EE-CCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 1 00 00 001121 22 444454 4457788999999886543
No 52
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=81.33 E-value=1.8 Score=28.28 Aligned_cols=33 Identities=9% Similarity=0.167 Sum_probs=17.9
Q ss_pred EEEEEEeccCCCcceEEEEEEeCCCCcccccCC
Q 015428 216 EVVCAVPVDQNDVSIIFFEIYSSRSRSWRTTDT 248 (407)
Q Consensus 216 kVv~~~~~~~~~~~~~~~~vy~s~t~~W~~~~~ 248 (407)
+|+.++.....+.....+++||..+++|+.++.
T Consensus 14 ~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~ 46 (49)
T PF13418_consen 14 SIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPS 46 (49)
T ss_dssp EEEEE--EEE-TEE---EEEEETTTTEEEE--S
T ss_pred eEEEECCCCCCCcccCCEEEEECCCCEEEECCC
Confidence 455555443323345578999999999999854
No 53
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=81.19 E-value=2.6 Score=27.64 Aligned_cols=33 Identities=9% Similarity=0.149 Sum_probs=23.5
Q ss_pred EEEEEEec--cCCCcceEEEEEEeCCCCcccccCC
Q 015428 216 EVVCAVPV--DQNDVSIIFFEIYSSRSRSWRTTDT 248 (407)
Q Consensus 216 kVv~~~~~--~~~~~~~~~~~vy~s~t~~W~~~~~ 248 (407)
||+.++.. .........+++||.++.+|+.+..
T Consensus 13 kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 13 KIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred EEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 66666655 2223356789999999999998764
No 54
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=80.88 E-value=0.89 Score=46.52 Aligned_cols=85 Identities=15% Similarity=0.132 Sum_probs=54.3
Q ss_pred ccccccccCCCCccceeccCCCCCCCcchhh-----hcCCCCccccccCCCCchHHHHHhcCCCCchhhhhhhcccHhhh
Q 015428 22 NADYVLDDFDNLPVNTRFLGSTSDAHPWFAK-----YANFPGLVKLKKNIGLSDVTMEHVLPFLPAKSLCRFKAVSKEWN 96 (407)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~Lpd~lle~IL~rLP~~sl~r~r~VCK~Wr 96 (407)
.+.-+--.|...+...+.+-...-..+.... ...-.+.....-...||-++...||..|+.+++++++.||+.|+
T Consensus 60 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~ 139 (537)
T KOG0274|consen 60 RLTNLIAQFSSLSEKEKKLLLDRLLDSSGPSQLSELGNLLEPLGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWN 139 (537)
T ss_pred chhheeehhcccchhhhceeeeeeccccCchhhhhhhhhcccccccchhhcccchhcccccccCCHHHhhhhhhhcchhh
Confidence 3444444566666666443332222211111 11113333344556899999888999999999999999999999
Q ss_pred hhhcCCcccc
Q 015428 97 RWISSPFLAH 106 (407)
Q Consensus 97 ~li~sp~F~~ 106 (407)
.++.+.....
T Consensus 140 ~~~~~~~~~~ 149 (537)
T KOG0274|consen 140 KLLDDDKVWW 149 (537)
T ss_pred hhhhccchhh
Confidence 9998876664
No 55
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=80.47 E-value=0.85 Score=44.23 Aligned_cols=38 Identities=24% Similarity=0.414 Sum_probs=32.1
Q ss_pred cCCCCchHHHHHhcCCCCchhhhhhhcccHhhhhhhcCC
Q 015428 64 KNIGLSDVTMEHVLPFLPAKSLCRFKAVSKEWNRWISSP 102 (407)
Q Consensus 64 ~~~~Lpd~lle~IL~rLP~~sl~r~r~VCK~Wr~li~sp 102 (407)
.|..+|+.++ .||+.|..+++.|++.+|+.|+-+..+-
T Consensus 72 ~~~LPpEl~l-kvFS~LDtksl~r~a~~c~~~n~~AlD~ 109 (483)
T KOG4341|consen 72 SRSLPPELLL-KVFSMLDTKSLCRAAQCCTMWNKLALDG 109 (483)
T ss_pred cccCCHHHHH-HHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence 5566666665 5999999999999999999999988764
No 56
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=79.99 E-value=3 Score=25.99 Aligned_cols=27 Identities=19% Similarity=0.148 Sum_probs=20.2
Q ss_pred ccceEEECCEEEEEecCCcEEEEEcCC
Q 015428 259 SINGFYMKGFVYWTSLSGAILVFDLKD 285 (407)
Q Consensus 259 ~~~~v~~~G~lYwl~~~~~Il~fD~~~ 285 (407)
...+++.+|.+|..+.++.+.+||.++
T Consensus 14 ~~~~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 14 WSSPAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp -S--EECTSEEEEE-TTSEEEEEETT-
T ss_pred CcCCEEECCEEEEEcCCCEEEEEeCCC
Confidence 346688999999999999999999875
No 57
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=79.94 E-value=14 Score=37.39 Aligned_cols=119 Identities=12% Similarity=0.073 Sum_probs=64.4
Q ss_pred CCEEEEEecCCcEEEEEcCCCeEee-EeCCCCCCCCccEEEecCeEEEEeeeCCCceEEEEEcCCccceeeEeeeeecc-
Q 015428 266 KGFVYWTSLSGAILVFDLKDEQYGI-LPLPARSGPYGALTQMHGELCYMLPQIQDGECLIGVYGNLDMSLKCVIPVEHE- 343 (407)
Q Consensus 266 ~G~lYwl~~~~~Il~fD~~~e~~~~-i~lP~~~~~~~~l~~~~G~L~~v~~~~~~~~w~l~~~~~~~W~~~~~i~l~~~- 343 (407)
+--||..+....|..|+++.++|-. +..-...-....+.+++|-|++-+.....+.|.... -+...++.....
T Consensus 145 scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~-----ksrv~~l~~~~~v 219 (703)
T KOG2321|consen 145 SCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD-----KSRVGTLDAASSV 219 (703)
T ss_pred CccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh-----hhhheeeeccccc
Confidence 3456776667889999999999932 222111112334555667666655443345554322 122233333211
Q ss_pred --cccC-cCCcceEEEeecCCEEE-Ee-cCCEEEEEECCCCeEEEecccCc
Q 015428 344 --VLGE-TFSDCRVLTCVNSDILI-IL-LPNKVIAYHVKAQKMQVVSETGT 389 (407)
Q Consensus 344 --~~~~-~~~~~~~~~~~~g~~ll-l~-~~~~l~~yd~~t~~~~~l~~~~~ 389 (407)
..|. ..+.+..+.|.++++=+ +. +.+.++.||+++.+=-.+.+.+.
T Consensus 220 ~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~ 270 (703)
T KOG2321|consen 220 NSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGY 270 (703)
T ss_pred CCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCC
Confidence 1121 12334556676644333 32 45789999999998666665543
No 58
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=79.88 E-value=37 Score=33.24 Aligned_cols=109 Identities=16% Similarity=0.198 Sum_probs=61.3
Q ss_pred cceEEECCEEEEEecCCcEEEEEcCC--CeEeeEeCCCCC---------CCCccEEEecCeEEEEeeeCCCceEEEEE-c
Q 015428 260 INGFYMKGFVYWTSLSGAILVFDLKD--EQYGILPLPARS---------GPYGALTQMHGELCYMLPQIQDGECLIGV-Y 327 (407)
Q Consensus 260 ~~~v~~~G~lYwl~~~~~Il~fD~~~--e~~~~i~lP~~~---------~~~~~l~~~~G~L~~v~~~~~~~~w~l~~-~ 327 (407)
..+++.+|.+|.....+.+.+||..+ ..|+. +++... .....++..+|++++.... ..+..+.. .
T Consensus 63 ~sPvv~~~~vy~~~~~g~l~ald~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~--g~l~ald~~t 139 (394)
T PRK11138 63 LHPAVAYNKVYAADRAGLVKALDADTGKEIWSV-DLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEK--GQVYALNAED 139 (394)
T ss_pred eccEEECCEEEEECCCCeEEEEECCCCcEeeEE-cCCCcccccccccccccccccEEECCEEEEEcCC--CEEEEEECCC
Confidence 36788999999998889999999874 46653 333210 1112345567777765432 33444432 2
Q ss_pred CCccceeeEeeeeecccccCcCCcceEEEeecCCEEEEec-CCEEEEEECCCCeEEE
Q 015428 328 GNLDMSLKCVIPVEHEVLGETFSDCRVLTCVNSDILIILL-PNKVIAYHVKAQKMQV 383 (407)
Q Consensus 328 ~~~~W~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~lll~~-~~~l~~yd~~t~~~~~ 383 (407)
+...|... +..... ..|+ ..++.|++.. +..++.+|.++++...
T Consensus 140 G~~~W~~~----~~~~~~------ssP~--v~~~~v~v~~~~g~l~ald~~tG~~~W 184 (394)
T PRK11138 140 GEVAWQTK----VAGEAL------SRPV--VSDGLVLVHTSNGMLQALNESDGAVKW 184 (394)
T ss_pred CCCccccc----CCCcee------cCCE--EECCEEEEECCCCEEEEEEccCCCEee
Confidence 33344322 111111 1121 2245566554 4679999999888553
No 59
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=77.21 E-value=31 Score=37.10 Aligned_cols=32 Identities=9% Similarity=0.254 Sum_probs=27.2
Q ss_pred ccceEEECCEEEEEecCCcEEEEEcCC--CeEee
Q 015428 259 SINGFYMKGFVYWTSLSGAILVFDLKD--EQYGI 290 (407)
Q Consensus 259 ~~~~v~~~G~lYwl~~~~~Il~fD~~~--e~~~~ 290 (407)
...++.++|.+|.-+..+.|.++|.++ +.|+.
T Consensus 187 e~TPlvvgg~lYv~t~~~~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 187 QATPLKVGDTLYLCTPHNKVIALDAATGKEKWKF 220 (764)
T ss_pred ccCCEEECCEEEEECCCCeEEEEECCCCcEEEEE
Confidence 457899999999988889999999885 57765
No 60
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=75.80 E-value=6.8 Score=25.42 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=14.0
Q ss_pred eEEEEEcCcccceeecCCCC
Q 015428 172 FFYYICNPVTKEWHVLPQPK 191 (407)
Q Consensus 172 ~~~~V~NP~T~~~~~LP~~~ 191 (407)
..++++|+.|++|.++|++|
T Consensus 29 ~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 29 NDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --EEEEETTTTEEEE--SS-
T ss_pred CCEEEEECCCCEEEECCCCC
Confidence 56889999999999998765
No 61
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=71.91 E-value=95 Score=29.68 Aligned_cols=166 Identities=15% Similarity=0.161 Sum_probs=90.6
Q ss_pred EEEEecCCCCCCCCCeEEEEEEeccCCCcceEEEEEEeCCCCcccccCCCCCCCcccccccceEEE-CCE-EEEEec-CC
Q 015428 200 VALVFEPSALGFSAHYEVVCAVPVDQNDVSIIFFEIYSSRSRSWRTTDTICSEPDVLKLSINGFYM-KGF-VYWTSL-SG 276 (407)
Q Consensus 200 ~~l~~d~~~~~~~~~ykVv~~~~~~~~~~~~~~~~vy~s~t~~W~~~~~~~~~~~~~~~~~~~v~~-~G~-lYwl~~-~~ 276 (407)
....++|. ++|.+++-. +.-++.+|+...|.=.......... .. -++.-+|. ||. .|.+++ +.
T Consensus 148 H~a~~tP~-----~~~l~v~DL-------G~Dri~~y~~~dg~L~~~~~~~v~~-G~-GPRHi~FHpn~k~aY~v~EL~s 213 (346)
T COG2706 148 HSANFTPD-----GRYLVVPDL-------GTDRIFLYDLDDGKLTPADPAEVKP-GA-GPRHIVFHPNGKYAYLVNELNS 213 (346)
T ss_pred ceeeeCCC-----CCEEEEeec-------CCceEEEEEcccCccccccccccCC-CC-CcceEEEcCCCcEEEEEeccCC
Confidence 34455654 556555432 2237888998887766554322211 00 12223333 564 455654 56
Q ss_pred cEEEEEcC--CCeEeeEe----CCCCCCCCccEE----EecCeEEEEeeeCCCceEEEEEcCCcc-ceeeEeeeeecccc
Q 015428 277 AILVFDLK--DEQYGILP----LPARSGPYGALT----QMHGELCYMLPQIQDGECLIGVYGNLD-MSLKCVIPVEHEVL 345 (407)
Q Consensus 277 ~Il~fD~~--~e~~~~i~----lP~~~~~~~~l~----~~~G~L~~v~~~~~~~~w~l~~~~~~~-W~~~~~i~l~~~~~ 345 (407)
.|.++... ..++..++ +|.+.......+ .-+|+..+++-+.+..+|......... -.+...... -
T Consensus 214 tV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~t----e 289 (346)
T COG2706 214 TVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPT----E 289 (346)
T ss_pred EEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEecc----C
Confidence 66666555 47887775 666543222222 237998888888778888876654422 222222211 1
Q ss_pred cCcCCcceEEEee-cCCEEEEec--C--CEEEEEECCCCeEEEecc
Q 015428 346 GETFSDCRVLTCV-NSDILIILL--P--NKVIAYHVKAQKMQVVSE 386 (407)
Q Consensus 346 ~~~~~~~~~~~~~-~g~~lll~~--~--~~l~~yd~~t~~~~~l~~ 386 (407)
|. ..|.+.+. +|+.|+... . -.+|.-|.+|+++..+..
T Consensus 290 g~---~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 290 GQ---FPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred Cc---CCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEeccc
Confidence 11 12445553 555555432 1 347888899999988875
No 62
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=71.52 E-value=9.8 Score=22.14 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=19.8
Q ss_pred EEECCEEEEEecCCcEEEEEcCCC
Q 015428 263 FYMKGFVYWTSLSGAILVFDLKDE 286 (407)
Q Consensus 263 v~~~G~lYwl~~~~~Il~fD~~~e 286 (407)
+..+|.+|.-+.++.|.++|..+.
T Consensus 3 ~~~~~~v~~~~~~g~l~a~d~~~G 26 (33)
T smart00564 3 VLSDGTVYVGSTDGTLYALDAKTG 26 (33)
T ss_pred EEECCEEEEEcCCCEEEEEEcccC
Confidence 456789998888899999999764
No 63
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=70.37 E-value=1.1e+02 Score=29.92 Aligned_cols=156 Identities=12% Similarity=0.097 Sum_probs=80.3
Q ss_pred CCeEEEEEEeccCCCcceEEEEEEeCCCC-----cccccCCCCCCCcccccccceEEECCEEEEEec----CCcEEEEEc
Q 015428 213 AHYEVVCAVPVDQNDVSIIFFEIYSSRSR-----SWRTTDTICSEPDVLKLSINGFYMKGFVYWTSL----SGAILVFDL 283 (407)
Q Consensus 213 ~~ykVv~~~~~~~~~~~~~~~~vy~s~t~-----~W~~~~~~~~~~~~~~~~~~~v~~~G~lYwl~~----~~~Il~fD~ 283 (407)
++|-++...... ....+.+.+...+ .|+.+.... .. .....-..++.+|.++. .+.|++.|+
T Consensus 238 ~~~l~i~~~~~~----~~s~v~~~d~~~~~~~~~~~~~l~~~~-~~----~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l 308 (414)
T PF02897_consen 238 GRYLFISSSSGT----SESEVYLLDLDDGGSPDAKPKLLSPRE-DG----VEYYVDHHGDRLYILTNDDAPNGRLVAVDL 308 (414)
T ss_dssp SSEEEEEEESSS----SEEEEEEEECCCTTTSS-SEEEEEESS-SS-----EEEEEEETTEEEEEE-TT-TT-EEEEEET
T ss_pred ccEEEEEEEccc----cCCeEEEEeccccCCCcCCcEEEeCCC-Cc----eEEEEEccCCEEEEeeCCCCCCcEEEEecc
Confidence 566665554321 2356777777765 677654311 11 11223345889999886 368999999
Q ss_pred CCCe---EeeEeCCCCCC-CCccEEEecCeEEEEeeeCCCceEEEEEcCCccceeeEeeeeecccccCcCCcceEEEe-e
Q 015428 284 KDEQ---YGILPLPARSG-PYGALTQMHGELCYMLPQIQDGECLIGVYGNLDMSLKCVIPVEHEVLGETFSDCRVLTC-V 358 (407)
Q Consensus 284 ~~e~---~~~i~lP~~~~-~~~~l~~~~G~L~~v~~~~~~~~w~l~~~~~~~W~~~~~i~l~~~~~~~~~~~~~~~~~-~ 358 (407)
.+-. |..+-+|.... .-..+...++.|.+...........+.+.. ..|.. ..+.++. .| ....+.. .
T Consensus 309 ~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~-~~~~~-~~~~~p~--~g----~v~~~~~~~ 380 (414)
T PF02897_consen 309 ADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD-DGKES-REIPLPE--AG----SVSGVSGDF 380 (414)
T ss_dssp TSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT--TEEE-EEEESSS--SS----EEEEEES-T
T ss_pred cccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECC-CCcEE-eeecCCc--ce----EEeccCCCC
Confidence 8754 66444444332 122344456777766665333333333332 13322 2233321 11 1112211 2
Q ss_pred cCCEEEEe-----cCCEEEEEECCCCeEEEec
Q 015428 359 NSDILIIL-----LPNKVIAYHVKAQKMQVVS 385 (407)
Q Consensus 359 ~g~~lll~-----~~~~l~~yd~~t~~~~~l~ 385 (407)
+++.+++. ....++.||+.+++.+.+.
T Consensus 381 ~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 381 DSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp T-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred CCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 44555553 2478999999999998775
No 64
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=68.53 E-value=61 Score=32.31 Aligned_cols=98 Identities=14% Similarity=0.248 Sum_probs=47.8
Q ss_pred CcEEEEEcCCCeEeeEe--CCCCCCC-----------CccEEEecCeEEEEeeeCCCceEEEEEcCCccceeeEeeeeec
Q 015428 276 GAILVFDLKDEQYGILP--LPARSGP-----------YGALTQMHGELCYMLPQIQDGECLIGVYGNLDMSLKCVIPVEH 342 (407)
Q Consensus 276 ~~Il~fD~~~e~~~~i~--lP~~~~~-----------~~~l~~~~G~L~~v~~~~~~~~w~l~~~~~~~W~~~~~i~l~~ 342 (407)
+.|--||++++....++ +|..... ....+..+|.+.....+. ....+..++ .++|.+..
T Consensus 287 GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG--kaFi~~~~~------~~~iqv~~ 358 (668)
T COG4946 287 GDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG--KAFIMRPWD------GYSIQVGK 358 (668)
T ss_pred CcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecC--cEEEECCCC------CeeEEcCC
Confidence 45788888888887664 5554211 012344566666665553 222222211 12333321
Q ss_pred ccccCcCCcceEEEee-cCCEEEEecCCEEEEEECCCCeEEEec
Q 015428 343 EVLGETFSDCRVLTCV-NSDILIILLPNKVIAYHVKAQKMQVVS 385 (407)
Q Consensus 343 ~~~~~~~~~~~~~~~~-~g~~lll~~~~~l~~yd~~t~~~~~l~ 385 (407)
. +. --++-+... ++.++-...+..+..||.++.+++++.
T Consensus 359 ~--~~--VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e 398 (668)
T COG4946 359 K--GG--VRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE 398 (668)
T ss_pred C--Cc--eEEEEEccCCcceEEeccCCceEEEEecCCceEEEee
Confidence 0 00 001111111 223333345568888999998888765
No 65
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=68.37 E-value=74 Score=32.68 Aligned_cols=117 Identities=18% Similarity=0.153 Sum_probs=62.2
Q ss_pred ccceEEECCEEEEEecCCcEEEEEcCC--CeEeeE-eCCCCCC-------CCccEEEecCeEEEEeeeCCCceEEEEE-c
Q 015428 259 SINGFYMKGFVYWTSLSGAILVFDLKD--EQYGIL-PLPARSG-------PYGALTQMHGELCYMLPQIQDGECLIGV-Y 327 (407)
Q Consensus 259 ~~~~v~~~G~lYwl~~~~~Il~fD~~~--e~~~~i-~lP~~~~-------~~~~l~~~~G~L~~v~~~~~~~~w~l~~-~ 327 (407)
...+++++|.+|..+..+.|.++|..+ +.|+.- ..|.... ....++..+|++++.... ..+..+.. .
T Consensus 62 ~stPvv~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d--g~l~ALDa~T 139 (527)
T TIGR03075 62 ESQPLVVDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD--ARLVALDAKT 139 (527)
T ss_pred ccCCEEECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC--CEEEEEECCC
Confidence 346788999999988788999999876 567653 3332211 112245556777665443 34455433 1
Q ss_pred CCccceeeEeeeeecccccCcCCcceEEEeecCCEEEEec-------CCEEEEEECCCCeEEEe
Q 015428 328 GNLDMSLKCVIPVEHEVLGETFSDCRVLTCVNSDILIILL-------PNKVIAYHVKAQKMQVV 384 (407)
Q Consensus 328 ~~~~W~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~lll~~-------~~~l~~yd~~t~~~~~l 384 (407)
+...|.... .... .+. .....|+ +. ++.|++.. ...++.||.+|++...-
T Consensus 140 Gk~~W~~~~-~~~~---~~~-~~tssP~-v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 140 GKVVWSKKN-GDYK---AGY-TITAAPL-VV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred CCEEeeccc-cccc---ccc-cccCCcE-EE-CCEEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 223342211 1110 000 0001122 12 34555532 36799999999986543
No 66
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=67.87 E-value=86 Score=27.62 Aligned_cols=139 Identities=16% Similarity=0.091 Sum_probs=73.1
Q ss_pred EEEEEeCCCCc--ccccCCCCCCCcccccccceEEECCEEEEEecCCcEEEEEcCCCeE-eeEeCCCCCCCCccEEEecC
Q 015428 232 FFEIYSSRSRS--WRTTDTICSEPDVLKLSINGFYMKGFVYWTSLSGAILVFDLKDEQY-GILPLPARSGPYGALTQMHG 308 (407)
Q Consensus 232 ~~~vy~s~t~~--W~~~~~~~~~~~~~~~~~~~v~~~G~lYwl~~~~~Il~fD~~~e~~-~~i~lP~~~~~~~~l~~~~G 308 (407)
.+..+|..+++ |+.--...... .....+..+|.+|....++.|.++|..+.+- -...++..... .....+|
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~--~~~~~~~ 77 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGPGIGG----PVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISG--APVVDGG 77 (238)
T ss_dssp EEEEEETTTTEEEEEEECSSSCSS----EEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGS--GEEEETT
T ss_pred EEEEEECCCCCEEEEEECCCCCCC----ccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccc--eeeeccc
Confidence 45667776664 87632110110 1112556899999988889999999866432 33355443222 2456677
Q ss_pred eEEEEeeeCCCceEEEE-EcCCccceeeEeeeeecccccCcCCcceEE-EeecCCEEEEec-CCEEEEEECCCCeEEEec
Q 015428 309 ELCYMLPQIQDGECLIG-VYGNLDMSLKCVIPVEHEVLGETFSDCRVL-TCVNSDILIILL-PNKVIAYHVKAQKMQVVS 385 (407)
Q Consensus 309 ~L~~v~~~~~~~~w~l~-~~~~~~W~~~~~i~l~~~~~~~~~~~~~~~-~~~~g~~lll~~-~~~l~~yd~~t~~~~~l~ 385 (407)
+++++... ..++.+. ..+...|.. ..-..+. . +...+. ....++.+++.. ...++.+|+++++...-.
T Consensus 78 ~v~v~~~~--~~l~~~d~~tG~~~W~~-~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 78 RVYVGTSD--GSLYALDAKTGKVLWSI-YLTSSPP--A----GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKY 148 (238)
T ss_dssp EEEEEETT--SEEEEEETTTSCEEEEE-EE-SSCT--C----STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEE
T ss_pred ccccccce--eeeEecccCCcceeeee-ccccccc--c----ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEe
Confidence 77666633 3444444 122223321 1111010 0 001111 112366666655 789999999999875433
No 67
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=67.54 E-value=11 Score=24.61 Aligned_cols=22 Identities=5% Similarity=0.209 Sum_probs=17.5
Q ss_pred ceEEEEEEeCCCCcccccCCCC
Q 015428 229 SIIFFEIYSSRSRSWRTTDTIC 250 (407)
Q Consensus 229 ~~~~~~vy~s~t~~W~~~~~~~ 250 (407)
....+.+|+..+++|+.+...|
T Consensus 17 ~~nd~~~~~~~~~~W~~~~~~P 38 (49)
T PF13415_consen 17 RLNDVWVFDLDTNTWTRIGDLP 38 (49)
T ss_pred EecCEEEEECCCCEEEECCCCC
Confidence 4457899999999999985543
No 68
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=65.36 E-value=1.2e+02 Score=29.21 Aligned_cols=106 Identities=15% Similarity=0.182 Sum_probs=55.5
Q ss_pred cceEEECCEEEEEecCCcEEEEEcCCC--eEeeEeCCCCCCCCccEEEecCeEEEEeeeCCCceEEEEE-cCCccceeeE
Q 015428 260 INGFYMKGFVYWTSLSGAILVFDLKDE--QYGILPLPARSGPYGALTQMHGELCYMLPQIQDGECLIGV-YGNLDMSLKC 336 (407)
Q Consensus 260 ~~~v~~~G~lYwl~~~~~Il~fD~~~e--~~~~i~lP~~~~~~~~l~~~~G~L~~v~~~~~~~~w~l~~-~~~~~W~~~~ 336 (407)
..++..+|.+|..+..+.|.+||..+. .|+ .+++.... ...+..+|++++.... ..+..+.. .+...|..
T Consensus 59 ~~p~v~~~~v~v~~~~g~v~a~d~~tG~~~W~-~~~~~~~~--~~p~v~~~~v~v~~~~--g~l~ald~~tG~~~W~~-- 131 (377)
T TIGR03300 59 LQPAVAGGKVYAADADGTVVALDAETGKRLWR-VDLDERLS--GGVGADGGLVFVGTEK--GEVIALDAEDGKELWRA-- 131 (377)
T ss_pred cceEEECCEEEEECCCCeEEEEEccCCcEeee-ecCCCCcc--cceEEcCCEEEEEcCC--CEEEEEECCCCcEeeee--
Confidence 467888999999888889999998754 454 34444322 2233345555544332 23333321 12223321
Q ss_pred eeeeecccccCcCCcceEEEeecCCEEEEe-cCCEEEEEECCCCeEE
Q 015428 337 VIPVEHEVLGETFSDCRVLTCVNSDILIIL-LPNKVIAYHVKAQKMQ 382 (407)
Q Consensus 337 ~i~l~~~~~~~~~~~~~~~~~~~g~~lll~-~~~~l~~yd~~t~~~~ 382 (407)
. +..... ..|+ ..++.+++. .+..++.+|.++++..
T Consensus 132 ~--~~~~~~------~~p~--v~~~~v~v~~~~g~l~a~d~~tG~~~ 168 (377)
T TIGR03300 132 K--LSSEVL------SPPL--VANGLVVVRTNDGRLTALDAATGERL 168 (377)
T ss_pred c--cCceee------cCCE--EECCEEEEECCCCeEEEEEcCCCcee
Confidence 1 111000 0111 134455554 3567888998887743
No 69
>smart00612 Kelch Kelch domain.
Probab=64.75 E-value=11 Score=23.61 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=18.8
Q ss_pred eEEEEEcCcccceeecCCCCcCC
Q 015428 172 FFYYICNPVTKEWHVLPQPKFFH 194 (407)
Q Consensus 172 ~~~~V~NP~T~~~~~LP~~~~~~ 194 (407)
..+.++||.|++|..+|+.+..+
T Consensus 15 ~~v~~yd~~~~~W~~~~~~~~~r 37 (47)
T smart00612 15 KSVEVYDPETNKWTPLPSMPTPR 37 (47)
T ss_pred eeEEEECCCCCeEccCCCCCCcc
Confidence 56789999999999999866543
No 70
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=63.81 E-value=1.4e+02 Score=28.57 Aligned_cols=119 Identities=13% Similarity=0.235 Sum_probs=67.3
Q ss_pred CCEEEEEec--CCcEEEEEcCCCe--E---eeEeCCCCCCCCccEEEecCeEEEEeeeCCCceEEEEEc-CCccceeeEe
Q 015428 266 KGFVYWTSL--SGAILVFDLKDEQ--Y---GILPLPARSGPYGALTQMHGELCYMLPQIQDGECLIGVY-GNLDMSLKCV 337 (407)
Q Consensus 266 ~G~lYwl~~--~~~Il~fD~~~e~--~---~~i~lP~~~~~~~~l~~~~G~L~~v~~~~~~~~w~l~~~-~~~~W~~~~~ 337 (407)
+|...|.+. .+.|..|++..+. + ..+.+|...+.+.....-+|+..++.......+-++... ..+.+.....
T Consensus 154 dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~ 233 (345)
T PF10282_consen 154 DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQT 233 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEE
Confidence 465555543 5789999997765 4 445777776654444445777666665544555544332 2344545444
Q ss_pred eeeecccccCcCC--cceEEEe-ecCCEEEEec--CCEEEEEEC--CCCeEEEeccc
Q 015428 338 IPVEHEVLGETFS--DCRVLTC-VNSDILIILL--PNKVIAYHV--KAQKMQVVSET 387 (407)
Q Consensus 338 i~l~~~~~~~~~~--~~~~~~~-~~g~~lll~~--~~~l~~yd~--~t~~~~~l~~~ 387 (407)
+..-+. .+.+ ....+.+ .+|+.|++.. ...|..|++ ++++++.+...
T Consensus 234 ~~~~~~---~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~ 287 (345)
T PF10282_consen 234 ISTLPE---GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTV 287 (345)
T ss_dssp EESCET---TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEE
T ss_pred eeeccc---cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEE
Confidence 443221 1112 2334455 4788888853 467888887 56778776543
No 71
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=62.08 E-value=1.2e+02 Score=30.74 Aligned_cols=100 Identities=8% Similarity=0.015 Sum_probs=62.3
Q ss_pred CCCeEEEEEEeccCCCcceEEEEEEeCCCCcccccCCCCC-CCcccccccceEEECCEEEEEec----------------
Q 015428 212 SAHYEVVCAVPVDQNDVSIIFFEIYSSRSRSWRTTDTICS-EPDVLKLSINGFYMKGFVYWTSL---------------- 274 (407)
Q Consensus 212 ~~~ykVv~~~~~~~~~~~~~~~~vy~s~t~~W~~~~~~~~-~~~~~~~~~~~v~~~G~lYwl~~---------------- 274 (407)
++.=|.|+.+.+. +...-.....|.+|-.|......-. +.+. .-.+++.++.++|.+..
T Consensus 213 s~~skmvvyGGM~--G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPR--SLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hek 288 (830)
T KOG4152|consen 213 SKKSKMVVYGGMS--GCRLGDLWTLDLDTLTWNKPSLSGVAPLPR--SLHSATTIGNKMYVFGGWVPLVMDDVKVATHEK 288 (830)
T ss_pred CCcceEEEEcccc--cccccceeEEecceeecccccccCCCCCCc--ccccceeecceeEEecceeeeeccccccccccc
Confidence 4455777666553 2223346677999999998653211 1111 13467888888886643
Q ss_pred ----CCcEEEEEcCCCeEeeEeC--------CCCCCCCccEEEecCeEEEEeee
Q 015428 275 ----SGAILVFDLKDEQYGILPL--------PARSGPYGALTQMHGELCYMLPQ 316 (407)
Q Consensus 275 ----~~~Il~fD~~~e~~~~i~l--------P~~~~~~~~l~~~~G~L~~v~~~ 316 (407)
...+-++++.+.+|..+-+ |.... ..+-+..+.||++-..+
T Consensus 289 EWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RA-GHCAvAigtRlYiWSGR 341 (830)
T KOG4152|consen 289 EWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARA-GHCAVAIGTRLYIWSGR 341 (830)
T ss_pred eeeeccceeeeeecchheeeeeeccccccccccccc-cceeEEeccEEEEEecc
Confidence 2479999999999988743 22221 22556667788887654
No 72
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=61.83 E-value=1.6e+02 Score=28.49 Aligned_cols=139 Identities=11% Similarity=0.033 Sum_probs=73.2
Q ss_pred EEEEEEeCCCCcccccCCCCCCCcccccccc-eEEECCEEEEEecCCcEEEEEcCCCe--EeeEeCCCCCCCCccEEEec
Q 015428 231 IFFEIYSSRSRSWRTTDTICSEPDVLKLSIN-GFYMKGFVYWTSLSGAILVFDLKDEQ--YGILPLPARSGPYGALTQMH 307 (407)
Q Consensus 231 ~~~~vy~s~t~~W~~~~~~~~~~~~~~~~~~-~v~~~G~lYwl~~~~~Il~fD~~~e~--~~~i~lP~~~~~~~~l~~~~ 307 (407)
.........+-.|.......... . .... +++.+|.+|....++.|.+||+.+.. |+.-..........-+...+
T Consensus 35 ~~~~~~~~g~~~W~~~~~~~~~~-~--~~~~~~~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~ 111 (370)
T COG1520 35 VAVANNTSGTLLWSVSLGSGGGG-I--YAGPAPADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSD 111 (370)
T ss_pred eEEEcccCcceeeeeecccCccc-e--EeccccEeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeC
Confidence 45555667778887532111111 1 1223 59999999999888899999999865 76544330111112223336
Q ss_pred CeEEEEeeeCCCceEEEEE-cCCccceeeEeeeeecccccCcCCcceEEEeecCCEEEEe-cCCEEEEEECCCCeEEEe
Q 015428 308 GELCYMLPQIQDGECLIGV-YGNLDMSLKCVIPVEHEVLGETFSDCRVLTCVNSDILIIL-LPNKVIAYHVKAQKMQVV 384 (407)
Q Consensus 308 G~L~~v~~~~~~~~w~l~~-~~~~~W~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~lll~-~~~~l~~yd~~t~~~~~l 384 (407)
|+|++-... .....+.. .+...| .+...- . . ....-.+..+..++.. ..+.++..|..+++.+..
T Consensus 112 G~i~~g~~~--g~~y~ld~~~G~~~W--~~~~~~--~--~----~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~ 178 (370)
T COG1520 112 GKIYVGSWD--GKLYALDASTGTLVW--SRNVGG--S--P----YYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWT 178 (370)
T ss_pred CeEEEeccc--ceEEEEECCCCcEEE--EEecCC--C--e----EEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEE
Confidence 776555444 23444433 222333 222111 0 0 0000012334556665 468899999888876544
No 73
>smart00284 OLF Olfactomedin-like domains.
Probab=61.20 E-value=1.4e+02 Score=27.53 Aligned_cols=122 Identities=17% Similarity=0.138 Sum_probs=66.3
Q ss_pred ccceEEECCEEEEEe-cCCcEEEEEcCCCeEeeE-eCCCCC-C----------CCccEEEecCeEEEEeeeCC-CceEEE
Q 015428 259 SINGFYMKGFVYWTS-LSGAILVFDLKDEQYGIL-PLPARS-G----------PYGALTQMHGELCYMLPQIQ-DGECLI 324 (407)
Q Consensus 259 ~~~~v~~~G~lYwl~-~~~~Il~fD~~~e~~~~i-~lP~~~-~----------~~~~l~~~~G~L~~v~~~~~-~~~w~l 324 (407)
...-|+.||.+|+-. .+..|+.||+.+++.... .+|... . ....+++-+..|.++....+ ....++
T Consensus 76 GtG~VVYngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivv 155 (255)
T smart00284 76 GTGVVVYNGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVI 155 (255)
T ss_pred cccEEEECceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEE
Confidence 456789999999954 357899999999988644 466421 1 12356666667777766543 234444
Q ss_pred EEcCCccceeeEeeeeecccccCcCCcceEEEeecCCEEEEe-c-----CCEEEEEECCCCeEEEecc
Q 015428 325 GVYGNLDMSLKCVIPVEHEVLGETFSDCRVLTCVNSDILIIL-L-----PNKVIAYHVKAQKMQVVSE 386 (407)
Q Consensus 325 ~~~~~~~W~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~lll~-~-----~~~l~~yd~~t~~~~~l~~ 386 (407)
...+...-...++++.. +.....+ =+|.--++|+.. + ..-.+.||..|++-+.+..
T Consensus 156 SkLnp~tL~ve~tW~T~--~~k~sa~----naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i 217 (255)
T smart00284 156 SKLNPATLTIENTWITT--YNKRSAS----NAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDI 217 (255)
T ss_pred EeeCcccceEEEEEEcC--CCccccc----ccEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeee
Confidence 33332222333333321 1111001 123222334432 1 1347889988887666543
No 74
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=60.70 E-value=1e+02 Score=31.21 Aligned_cols=32 Identities=16% Similarity=0.273 Sum_probs=26.4
Q ss_pred ccceEEECCEEEEEecCCcEEEEEcCC--CeEee
Q 015428 259 SINGFYMKGFVYWTSLSGAILVFDLKD--EQYGI 290 (407)
Q Consensus 259 ~~~~v~~~G~lYwl~~~~~Il~fD~~~--e~~~~ 290 (407)
...+++.+|.+|....++.+.++|..+ ..|+.
T Consensus 54 ~~sPvv~~g~vy~~~~~g~l~AlD~~tG~~~W~~ 87 (488)
T cd00216 54 EGTPLVVDGDMYFTTSHSALFALDAATGKVLWRY 87 (488)
T ss_pred ccCCEEECCEEEEeCCCCcEEEEECCCChhhcee
Confidence 346789999999988889999999875 46765
No 75
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=59.23 E-value=12 Score=24.41 Aligned_cols=23 Identities=9% Similarity=0.031 Sum_probs=18.7
Q ss_pred eEEEEEcCcccceeecCCCCcCC
Q 015428 172 FFYYICNPVTKEWHVLPQPKFFH 194 (407)
Q Consensus 172 ~~~~V~NP~T~~~~~LP~~~~~~ 194 (407)
..++++||.|++|.+++..|..+
T Consensus 19 nd~~~~~~~~~~W~~~~~~P~~R 41 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRIGDLPPPR 41 (49)
T ss_pred cCEEEEECCCCEEEECCCCCCCc
Confidence 56899999999999997765543
No 76
>PLN02772 guanylate kinase
Probab=58.25 E-value=55 Score=32.11 Aligned_cols=67 Identities=12% Similarity=0.059 Sum_probs=47.2
Q ss_pred cceEEECCEEEEEec-------CCcEEEEEcCCCeEeeEe----CCCCCCCCccEEEecCeEEEEeee--CCCceEEEEE
Q 015428 260 INGFYMKGFVYWTSL-------SGAILVFDLKDEQYGILP----LPARSGPYGALTQMHGELCYMLPQ--IQDGECLIGV 326 (407)
Q Consensus 260 ~~~v~~~G~lYwl~~-------~~~Il~fD~~~e~~~~i~----lP~~~~~~~~l~~~~G~L~~v~~~--~~~~~w~l~~ 326 (407)
..++.++.++|.++. ...+-.||..+.+|..-. .|.........+.-+++|.++.-. .+..+|-|+.
T Consensus 28 ~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~~~~w~l~~ 107 (398)
T PLN02772 28 ETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPDDSIWFLEV 107 (398)
T ss_pred ceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCccceEEEEc
Confidence 478899999998874 137999999999997753 333333334445557888887643 3578998865
No 77
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=54.19 E-value=2.4e+02 Score=28.20 Aligned_cols=89 Identities=24% Similarity=0.372 Sum_probs=52.4
Q ss_pred EcCcccceeecCCCCcCCCCcceEEEEecCCCCCCCCCeEEEEEEeccCCCcceEEEEEEeCCCCcccc-cCCCCCCCcc
Q 015428 177 CNPVTKEWHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAVPVDQNDVSIIFFEIYSSRSRSWRT-TDTICSEPDV 255 (407)
Q Consensus 177 ~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~~~~~ykVv~~~~~~~~~~~~~~~~vy~s~t~~W~~-~~~~~~~~~~ 255 (407)
-+|-++.|++.-.++..........+.|.|. ..|-+++... ..+.+|++.+.+=+. ...
T Consensus 7 ~t~e~~~w~~~~~~~~~ke~~~vssl~fsp~-----~P~d~aVt~S--------~rvqly~~~~~~~~k~~sr------- 66 (487)
T KOG0310|consen 7 ETPEIRYWRQETFPPVHKEHNSVSSLCFSPK-----HPYDFAVTSS--------VRVQLYSSVTRSVRKTFSR------- 66 (487)
T ss_pred CCccchhhhhhcccccccccCcceeEecCCC-----CCCceEEecc--------cEEEEEecchhhhhhhHHh-------
Confidence 3566677766554433222334566778776 4555555443 379999998865443 111
Q ss_pred cccccceE--EECCEEEEEec-CCcEEEEEcCC
Q 015428 256 LKLSINGF--YMKGFVYWTSL-SGAILVFDLKD 285 (407)
Q Consensus 256 ~~~~~~~v--~~~G~lYwl~~-~~~Il~fD~~~ 285 (407)
+.-.-.++ .-+|.|...+. ++.|-.||+.+
T Consensus 67 Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~ 99 (487)
T KOG0310|consen 67 FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS 99 (487)
T ss_pred hccceeEEEeecCCeEEEccCCcCcEEEecccc
Confidence 10111333 34599988775 68899999665
No 78
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=50.51 E-value=1.9e+02 Score=25.90 Aligned_cols=51 Identities=22% Similarity=0.410 Sum_probs=36.6
Q ss_pred eEEE--CCEEEEEec-CCcEEEEEcCCCeEeeEeCCCCCCCCccEEE-ecCeEEEEee
Q 015428 262 GFYM--KGFVYWTSL-SGAILVFDLKDEQYGILPLPARSGPYGALTQ-MHGELCYMLP 315 (407)
Q Consensus 262 ~v~~--~G~lYwl~~-~~~Il~fD~~~e~~~~i~lP~~~~~~~~l~~-~~G~L~~v~~ 315 (407)
+++. +|.|||... .+.|..+|+.+.+...+.+|.. ...... -+|+|+++..
T Consensus 5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~---~G~~~~~~~g~l~v~~~ 59 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGP---NGMAFDRPDGRLYVADS 59 (246)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSSE---EEEEEECTTSEEEEEET
T ss_pred eEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCCC---ceEEEEccCCEEEEEEc
Confidence 4555 699999874 6789999999999999988882 223333 3566666543
No 79
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=49.70 E-value=11 Score=35.72 Aligned_cols=39 Identities=13% Similarity=0.159 Sum_probs=33.5
Q ss_pred ccCCCCchHHHHHhcCCCCc--------hhhhhhhcccHhhhhhhcC
Q 015428 63 KKNIGLSDVTMEHVLPFLPA--------KSLCRFKAVSKEWNRWISS 101 (407)
Q Consensus 63 ~~~~~Lpd~lle~IL~rLP~--------~sl~r~r~VCK~Wr~li~s 101 (407)
..|+.||.+++.+|+.|.-- ++.+.+..|||.||.+..+
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 69999999999999999862 3688999999999997654
No 80
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=49.12 E-value=1.2e+02 Score=28.33 Aligned_cols=64 Identities=16% Similarity=0.214 Sum_probs=47.0
Q ss_pred ceEEEEEEeCCCCcccccCCCCCCCc--ccc-cccceEEECCEEEEEe-cCCcEEEEEcCCCeEeeEeC
Q 015428 229 SIIFFEIYSSRSRSWRTTDTICSEPD--VLK-LSINGFYMKGFVYWTS-LSGAILVFDLKDEQYGILPL 293 (407)
Q Consensus 229 ~~~~~~vy~s~t~~W~~~~~~~~~~~--~~~-~~~~~v~~~G~lYwl~-~~~~Il~fD~~~e~~~~i~l 293 (407)
....+.+|+..+.+|...... .... .+. ....-+++.|.|-.-. ....+..||..+.+|+.+.-
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~-i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNG-ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred CCCEEEEEECCCCEeecCCCC-ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCC
Confidence 456889999999999987654 1111 111 2467888888887655 45789999999999988765
No 81
>PF13013 F-box-like_2: F-box-like domain
Probab=48.89 E-value=14 Score=29.07 Aligned_cols=30 Identities=7% Similarity=0.104 Sum_probs=24.7
Q ss_pred cCCCCchHHHHHhcCCCCchhhhhhhcccH
Q 015428 64 KNIGLSDVTMEHVLPFLPAKSLCRFKAVSK 93 (407)
Q Consensus 64 ~~~~Lpd~lle~IL~rLP~~sl~r~r~VCK 93 (407)
...+||+||++.|+..-....+......|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 567899999999999999888866666665
No 82
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=46.65 E-value=2.1e+02 Score=25.35 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=25.5
Q ss_pred EECCEEEEEecCCcEEEEEcCCCeEeeEeCCCC
Q 015428 264 YMKGFVYWTSLSGAILVFDLKDEQYGILPLPAR 296 (407)
Q Consensus 264 ~~~G~lYwl~~~~~Il~fD~~~e~~~~i~lP~~ 296 (407)
.|||.+ ++.....+...|+.|++|..++.|+.
T Consensus 3 sCnGLl-c~~~~~~~~V~NP~T~~~~~LP~~~~ 34 (230)
T TIGR01640 3 PCDGLI-CFSYGKRLVVWNPSTGQSRWLPTPKS 34 (230)
T ss_pred ccceEE-EEecCCcEEEECCCCCCEEecCCCCC
Confidence 478988 55555789999999999998876643
No 83
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=45.71 E-value=2.8e+02 Score=26.61 Aligned_cols=56 Identities=14% Similarity=0.167 Sum_probs=35.4
Q ss_pred EEEEEeCCCC--cccccCCCCCCCcccccccceEEECCEEEEEecCCcEEEEEcCCC--eEe
Q 015428 232 FFEIYSSRSR--SWRTTDTICSEPDVLKLSINGFYMKGFVYWTSLSGAILVFDLKDE--QYG 289 (407)
Q Consensus 232 ~~~vy~s~t~--~W~~~~~~~~~~~~~~~~~~~v~~~G~lYwl~~~~~Il~fD~~~e--~~~ 289 (407)
.+..+|..++ .|+.....+. ........++..+|.+|.-..++.+.++|+.++ .|+
T Consensus 156 ~l~a~d~~tG~~~W~~~~~~~~--~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~ 215 (377)
T TIGR03300 156 RLTALDAATGERLWTYSRVTPA--LTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWE 215 (377)
T ss_pred eEEEEEcCCCceeeEEccCCCc--eeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeee
Confidence 4667787766 4875432211 111123456788898887766789999999764 564
No 84
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=43.97 E-value=2.9e+02 Score=26.20 Aligned_cols=174 Identities=14% Similarity=0.154 Sum_probs=81.6
Q ss_pred EEEEecCCCCCCCCCeEEEEEEeccCCCcceEEEEEEeCCCCcccccCCCCCCCcccccccceEE--ECCEEEEEec-CC
Q 015428 200 VALVFEPSALGFSAHYEVVCAVPVDQNDVSIIFFEIYSSRSRSWRTTDTICSEPDVLKLSINGFY--MKGFVYWTSL-SG 276 (407)
Q Consensus 200 ~~l~~d~~~~~~~~~ykVv~~~~~~~~~~~~~~~~vy~s~t~~W~~~~~~~~~~~~~~~~~~~v~--~~G~lYwl~~-~~ 276 (407)
-.+.|.|. ++|-+|.-. .....+||..|-+==.... |..... .....|- -.|.+|..+. ++
T Consensus 220 rsiSfHPs-----GefllvgTd--------Hp~~rlYdv~T~Qcfvsan-Pd~qht--~ai~~V~Ys~t~~lYvTaSkDG 283 (430)
T KOG0640|consen 220 RSISFHPS-----GEFLLVGTD--------HPTLRLYDVNTYQCFVSAN-PDDQHT--GAITQVRYSSTGSLYVTASKDG 283 (430)
T ss_pred eeEeecCC-----CceEEEecC--------CCceeEEeccceeEeeecC-cccccc--cceeEEEecCCccEEEEeccCC
Confidence 45667774 777766532 3467888887743221111 111111 1112222 2589999764 67
Q ss_pred cEEEEEcCCCeE-eeEeCC-CCCCCCccEEEecCeEEEEeeeCCCceEEEEEcCCccceeeEeeeeecccccCcCCcceE
Q 015428 277 AILVFDLKDEQY-GILPLP-ARSGPYGALTQMHGELCYMLPQIQDGECLIGVYGNLDMSLKCVIPVEHEVLGETFSDCRV 354 (407)
Q Consensus 277 ~Il~fD~~~e~~-~~i~lP-~~~~~~~~l~~~~G~L~~v~~~~~~~~w~l~~~~~~~W~~~~~i~l~~~~~~~~~~~~~~ 354 (407)
.|--||-.+.+. ..|.-- .....+.....-+|+..+.... ..+-.||+.+.+....+++ ....-|+ -..+.
T Consensus 284 ~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~--DS~vkLWEi~t~R~l~~Yt---GAg~tgr--q~~rt 356 (430)
T KOG0640|consen 284 AIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK--DSTVKLWEISTGRMLKEYT---GAGTTGR--QKHRT 356 (430)
T ss_pred cEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC--cceeeeeeecCCceEEEEe---cCCcccc--hhhhh
Confidence 888888776554 222211 1111122233335654443332 3344445544444222221 1111111 01111
Q ss_pred -EEe-ecCCEEEEec--CCEEEEEECCCCeEEEecccCcCCcceeE
Q 015428 355 -LTC-VNSDILIILL--PNKVIAYHVKAQKMQVVSETGTEGFQNCL 396 (407)
Q Consensus 355 -~~~-~~g~~lll~~--~~~l~~yd~~t~~~~~l~~~~~~~~~~~~ 396 (407)
..| ...+.+++-. ...+..+|-++..-..+...|.-+..+.+
T Consensus 357 qAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i 402 (430)
T KOG0640|consen 357 QAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWI 402 (430)
T ss_pred hhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEE
Confidence 123 3456656543 36789999888776555544433333333
No 85
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=43.21 E-value=1.5e+02 Score=23.41 Aligned_cols=43 Identities=16% Similarity=0.219 Sum_probs=28.0
Q ss_pred eEEEEEcCcccceeecCCCCcCCCCcceEEEEecCCCCCCCCCeEEEEEE
Q 015428 172 FFYYICNPVTKEWHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAV 221 (407)
Q Consensus 172 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~~~~~ykVv~~~ 221 (407)
-.+.+.||.|+.|. |...... ....+.+-+++. .+.|+|+...
T Consensus 9 A~Vm~~d~~tk~W~--P~~~~~~-~ls~V~~~~~~~----~~~yrIvg~~ 51 (111)
T cd01207 9 ASVMVYDDSNKKWV--PAGGGSQ-GFSRVQIYHHPR----NNTFRVVGRK 51 (111)
T ss_pred EEeeEEcCCCCcEE--cCCCCCC-CcceEEEEEcCC----CCEEEEEEee
Confidence 46789999999864 4332111 123466667776 6889999764
No 86
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=40.28 E-value=39 Score=20.59 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=17.0
Q ss_pred CEEEEEecCCcEEEEEcCCC--eEee
Q 015428 267 GFVYWTSLSGAILVFDLKDE--QYGI 290 (407)
Q Consensus 267 G~lYwl~~~~~Il~fD~~~e--~~~~ 290 (407)
|.+|.-+.++.|.++|.++. .|+.
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~~ 26 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWKF 26 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEEE
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEee
Confidence 56677666788999998775 4443
No 87
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=38.39 E-value=99 Score=24.26 Aligned_cols=41 Identities=17% Similarity=0.398 Sum_probs=29.2
Q ss_pred CeEEEEEcCccc-ceeecCCCCcCCCCcceEEEEecCCCCCCCCCeEEEEEE
Q 015428 171 NFFYYICNPVTK-EWHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAV 221 (407)
Q Consensus 171 ~~~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~l~~d~~~~~~~~~ykVv~~~ 221 (407)
.-.++++||.|+ .|...- + ....+.+-+|+. ...|+||.+.
T Consensus 10 rA~V~~yd~~tKk~WvPs~--~----~~~~V~~y~~~~----~ntfRIi~~~ 51 (111)
T cd01206 10 RAHVFQIDPKTKKNWIPAS--K----HAVTVSYFYDST----RNVYRIISVG 51 (111)
T ss_pred eeEEEEECCCCcceeEeCC--C----CceeEEEEecCC----CcEEEEEEec
Confidence 356899999997 664333 2 124577788988 7899999864
No 88
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=36.34 E-value=2.7e+02 Score=28.51 Aligned_cols=113 Identities=12% Similarity=0.182 Sum_probs=60.5
Q ss_pred ecCceEEEeeecccCCeEEEEEcCcccceeecCCCCcCCCCcceEEEEecCCCCCCCCCeEEEEEEeccCCCcceEEEEE
Q 015428 156 TCNGLVCCQSVFEVGNFFYYICNPVTKEWHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAVPVDQNDVSIIFFEI 235 (407)
Q Consensus 156 s~~GLll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~~~~~ykVv~~~~~~~~~~~~~~~~v 235 (407)
..+|-+|+.+ ++..++.||||..++...+=. ..+ ....+..-|-|. +++=.|+... ....+.+
T Consensus 59 n~dG~lL~SG---SDD~r~ivWd~~~~KllhsI~--TgH-taNIFsvKFvP~----tnnriv~sgA-------gDk~i~l 121 (758)
T KOG1310|consen 59 NADGELLASG---SDDTRLIVWDPFEYKLLHSIS--TGH-TANIFSVKFVPY----TNNRIVLSGA-------GDKLIKL 121 (758)
T ss_pred cCCCCEEeec---CCcceEEeecchhcceeeeee--ccc-ccceeEEeeecc----CCCeEEEecc-------CcceEEE
Confidence 6688888877 577899999999554433222 111 122344556776 4554444332 2236788
Q ss_pred EeCCCCcccccCCC-CCCCccc-----ccccceEEECC-EEEEEe-cCCcEEEEEcCC
Q 015428 236 YSSRSRSWRTTDTI-CSEPDVL-----KLSINGFYMKG-FVYWTS-LSGAILVFDLKD 285 (407)
Q Consensus 236 y~s~t~~W~~~~~~-~~~~~~~-----~~~~~~v~~~G-~lYwl~-~~~~Il~fD~~~ 285 (407)
||....+=+..... ..+...+ ....-.+.-+| ..+|-+ .++.|.-||+..
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 88765332221110 0000000 01112333445 678865 478999999876
No 89
>PF15408 PH_7: Pleckstrin homology domain
Probab=36.20 E-value=16 Score=27.12 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=20.6
Q ss_pred chhhhhhhcccHhhhhhhcCCcccc
Q 015428 82 AKSLCRFKAVSKEWNRWISSPFLAH 106 (407)
Q Consensus 82 ~~sl~r~r~VCK~Wr~li~sp~F~~ 106 (407)
++-++..+-|||+|-....+|+|.-
T Consensus 76 ~~~FA~S~~~~~~Wi~~mN~~s~~~ 100 (104)
T PF15408_consen 76 VQCFASSKKVCQSWIQVMNSPSFRV 100 (104)
T ss_pred hhhhhhHHHHHHHHHHHhcChhhhh
Confidence 3456677889999999999999874
No 90
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=35.11 E-value=3.8e+02 Score=25.02 Aligned_cols=107 Identities=11% Similarity=0.190 Sum_probs=61.7
Q ss_pred eEEEEEcCcccceeecCCCCcCCCCcceEEEEecCCCCCCCCCeEEEEEEeccCCCcceEEEEEEeCCCCcccccCCCC-
Q 015428 172 FFYYICNPVTKEWHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAVPVDQNDVSIIFFEIYSSRSRSWRTTDTIC- 250 (407)
Q Consensus 172 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~~~~~ykVv~~~~~~~~~~~~~~~~vy~s~t~~W~~~~~~~- 250 (407)
..+++||+.+++|..+-.. ..+ ....+.+. ..=+|++.+....++.....+.+|+..+.+|.......
T Consensus 16 ~~lC~yd~~~~qW~~~g~~--i~G--~V~~l~~~-------~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s 84 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNG--ISG--TVTDLQWA-------SNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSS 84 (281)
T ss_pred CEEEEEECCCCEeecCCCC--ceE--EEEEEEEe-------cCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCccc
Confidence 5678899999999877654 111 22344443 12256666554433435678999999999998876521
Q ss_pred --CCCc--ccc---cccceEEECCEEEEEecCCcEEEEEcCCCeEeeEeC
Q 015428 251 --SEPD--VLK---LSINGFYMKGFVYWTSLSGAILVFDLKDEQYGILPL 293 (407)
Q Consensus 251 --~~~~--~~~---~~~~~v~~~G~lYwl~~~~~Il~fD~~~e~~~~i~l 293 (407)
.+.+ ... .....+++.|.. -.....|+.|| ..+|+.+..
T Consensus 85 ~~ipgpv~a~~~~~~d~~~~~~aG~~--~~g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 85 NSIPGPVTALTFISNDGSNFWVAGRS--ANGSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred ccCCCcEEEEEeeccCCceEEEecee--cCCCceEEEEc--CCceEeccc
Confidence 1111 110 123345555555 12245788885 446777654
No 91
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=33.05 E-value=1.8e+02 Score=29.50 Aligned_cols=57 Identities=11% Similarity=0.044 Sum_probs=42.6
Q ss_pred ceEEECCEEEEEecCCcEEEEEcCCC--eEeeEeCCCCCCCCccEEEecCeEEEEeeeCC
Q 015428 261 NGFYMKGFVYWTSLSGAILVFDLKDE--QYGILPLPARSGPYGALTQMHGELCYMLPQIQ 318 (407)
Q Consensus 261 ~~v~~~G~lYwl~~~~~Il~fD~~~e--~~~~i~lP~~~~~~~~l~~~~G~L~~v~~~~~ 318 (407)
+.+..+|.+|.-..++.|.+||..+. .|+ .++|........+...+|+++++.....
T Consensus 401 ~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~-~~~~~~~~a~P~~~~~~g~~yv~~~~g~ 459 (488)
T cd00216 401 SLATAGNLVFAGAADGYFRAFDATTGKELWK-FRTPSGIQATPMTYEVNGKQYVGVMVGG 459 (488)
T ss_pred ceEecCCeEEEECCCCeEEEEECCCCceeeE-EECCCCceEcCEEEEeCCEEEEEEEecC
Confidence 45677788888777899999998763 555 5777665544455677999999988743
No 92
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=31.95 E-value=73 Score=24.04 Aligned_cols=16 Identities=25% Similarity=0.530 Sum_probs=14.1
Q ss_pred CcEEEEEcCCCeEeeE
Q 015428 276 GAILVFDLKDEQYGIL 291 (407)
Q Consensus 276 ~~Il~fD~~~e~~~~i 291 (407)
++++.||+.+.+.+++
T Consensus 37 GRll~ydp~t~~~~vl 52 (89)
T PF03088_consen 37 GRLLRYDPSTKETTVL 52 (89)
T ss_dssp EEEEEEETTTTEEEEE
T ss_pred cCEEEEECCCCeEEEe
Confidence 6899999999988776
No 93
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=31.73 E-value=3.9e+02 Score=24.39 Aligned_cols=127 Identities=13% Similarity=0.066 Sum_probs=0.0
Q ss_pred CceEEEeeecccCCeEEEEEcCcc----cceeecCCCCcCCCCcceEEEEecCCCCCCCCCeEEEEEEeccCCCcceEEE
Q 015428 158 NGLVCCQSVFEVGNFFYYICNPVT----KEWHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAVPVDQNDVSIIFF 233 (407)
Q Consensus 158 ~GLll~~~~~~~~~~~~~V~NP~T----~~~~~LP~~~~~~~~~~~~~l~~d~~~~~~~~~ykVv~~~~~~~~~~~~~~~ 233 (407)
||-++..++...+...+.+++|.+ .+|...+..-.....+......-| + +|+.++..........--
T Consensus 77 dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D------G---~vlIvGG~~~~t~E~~P~ 147 (243)
T PF07250_consen 77 DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD------G---RVLIVGGSNNPTYEFWPP 147 (243)
T ss_pred CCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC------C---CEEEEeCcCCCcccccCC
Q ss_pred EEEeCCCCcccccCCCCCCCcccccccceEEECCEEEEEecCCcEEEEEcCCCeEeeEeCCC
Q 015428 234 EIYSSRSRSWRTTDTICSEPDVLKLSINGFYMKGFVYWTSLSGAILVFDLKDEQYGILPLPA 295 (407)
Q Consensus 234 ~vy~s~t~~W~~~~~~~~~~~~~~~~~~~v~~~G~lYwl~~~~~Il~fD~~~e~~~~i~lP~ 295 (407)
..-......|...............+.--+.-+|.+++.+..+.++ ||..+.+. +-++|.
T Consensus 148 ~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i-~d~~~n~v-~~~lP~ 207 (243)
T PF07250_consen 148 KGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSII-YDYKTNTV-VRTLPD 207 (243)
T ss_pred ccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEE-EeCCCCeE-EeeCCC
No 94
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=30.96 E-value=5.6e+02 Score=25.69 Aligned_cols=114 Identities=14% Similarity=0.107 Sum_probs=58.6
Q ss_pred cceEEECCE-EEEEec-CCcEEEEEcCCCeEeeEeCCCCCCC--CccEEEe-cCeEEEEeeeCCCceEEEEEcCCcccee
Q 015428 260 INGFYMKGF-VYWTSL-SGAILVFDLKDEQYGILPLPARSGP--YGALTQM-HGELCYMLPQIQDGECLIGVYGNLDMSL 334 (407)
Q Consensus 260 ~~~v~~~G~-lYwl~~-~~~Il~fD~~~e~~~~i~lP~~~~~--~~~l~~~-~G~L~~v~~~~~~~~w~l~~~~~~~W~~ 334 (407)
....+-+|. .-+.+. ...+.+||+.+.+...+..|..... .....++ +|. +++.....+.+-.|.. -+++ |
T Consensus 262 ~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLha-kT~e--l 337 (514)
T KOG2055|consen 262 KAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHA-KTKE--L 337 (514)
T ss_pred eeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehh-hhhh--h
Confidence 334444665 333332 4689999999999998887766542 1122222 233 1211111111111110 1122 2
Q ss_pred eEeeeeecccccCcCCcceEEEe-ecCCEEEEec-CCEEEEEECCCCeEEEec
Q 015428 335 KCVIPVEHEVLGETFSDCRVLTC-VNSDILIILL-PNKVIAYHVKAQKMQVVS 385 (407)
Q Consensus 335 ~~~i~l~~~~~~~~~~~~~~~~~-~~g~~lll~~-~~~l~~yd~~t~~~~~l~ 385 (407)
...+.+. +....+.| .++..|+... .+.++.+|++++...+..
T Consensus 338 i~s~Kie--------G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf 382 (514)
T KOG2055|consen 338 ITSFKIE--------GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRF 382 (514)
T ss_pred hheeeec--------cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEE
Confidence 2233332 34555666 4666666653 478999999999766554
No 95
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=30.95 E-value=4.9e+02 Score=26.92 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=22.5
Q ss_pred EeecCceEEEeeecccCCeEEEEEcCcccceee
Q 015428 154 RTTCNGLVCCQSVFEVGNFFYYICNPVTKEWHV 186 (407)
Q Consensus 154 ~~s~~GLll~~~~~~~~~~~~~V~NP~T~~~~~ 186 (407)
+..+||||++.. ..+.+-.|+|-+++...
T Consensus 183 in~~hgLla~Gt----~~g~VEfwDpR~ksrv~ 211 (703)
T KOG2321|consen 183 INEEHGLLACGT----EDGVVEFWDPRDKSRVG 211 (703)
T ss_pred ecCccceEEecc----cCceEEEecchhhhhhe
Confidence 569999999975 34667789999988644
No 96
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=30.77 E-value=37 Score=25.91 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=25.0
Q ss_pred CCceEEeecCceEEEeeecccCCeE-EEEEcCcccceee
Q 015428 149 QLVNIRTTCNGLVCCQSVFEVGNFF-YYICNPVTKEWHV 186 (407)
Q Consensus 149 ~~~~i~~s~~GLll~~~~~~~~~~~-~~V~NP~T~~~~~ 186 (407)
+++.++.+.+||.+.........+. --||+|+|++.+.
T Consensus 32 ~~ikVieg~~GlFVaMPs~k~~~g~y~DI~~Pit~e~Re 70 (94)
T PRK13259 32 HDIRVIEGNNGLFIAMPSKRTPDGEFRDIAHPINSDTRE 70 (94)
T ss_pred eeeEEEECCCCeEEECcCcCCCCCcEEEEEccCCHHHHH
Confidence 3567888899987776532122232 3499999988654
No 97
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=29.76 E-value=4.6e+02 Score=24.34 Aligned_cols=59 Identities=15% Similarity=0.148 Sum_probs=36.3
Q ss_pred EEEEecCCcEEEEEcCCC--eEeeEeC------CCCCCCCccEEEecCeEEEEeeeCCCceEEEEEc
Q 015428 269 VYWTSLSGAILVFDLKDE--QYGILPL------PARSGPYGALTQMHGELCYMLPQIQDGECLIGVY 327 (407)
Q Consensus 269 lYwl~~~~~Il~fD~~~e--~~~~i~l------P~~~~~~~~l~~~~G~L~~v~~~~~~~~w~l~~~ 327 (407)
+|.-+.++.+.+.|+.+. .|..+-- |.-.+....++..+|.|++++.......|.....
T Consensus 26 v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~ 92 (354)
T KOG4649|consen 26 VVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL 92 (354)
T ss_pred EEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeeh
Confidence 333344678888998764 6655421 1112234456777899999988866667765443
No 98
>PF11483 DUF3209: Protein of unknown function (DUF3209); InterPro: IPR021577 This family of proteins has no known function. ; PDB: 2EHW_D.
Probab=29.45 E-value=19 Score=28.40 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=13.9
Q ss_pred chHHHHhhhcccccccccccc
Q 015428 8 NLEEEVMEETTEEENADYVLD 28 (407)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~ 28 (407)
+|||||..-+++||..+|.+.
T Consensus 62 dLEe~ia~~~~~dP~~~YlRg 82 (123)
T PF11483_consen 62 DLEEEIAATDSDDPKYDYLRG 82 (123)
T ss_dssp HHHHH-HHHSTT-H---HHHH
T ss_pred HHHHHHhcCCCCCchHHHHHH
Confidence 589999999999999888765
No 99
>PRK05137 tolB translocation protein TolB; Provisional
Probab=28.13 E-value=5.9e+02 Score=25.11 Aligned_cols=185 Identities=11% Similarity=0.034 Sum_probs=87.9
Q ss_pred CCeEEEEEcCcccceeecCCCCcCCCCcceEEEEecCCCCCCCCCeEEEEEEeccCCCcceEEEEEEeCCCCcccccCCC
Q 015428 170 GNFFYYICNPVTKEWHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAVPVDQNDVSIIFFEIYSSRSRSWRTTDTI 249 (407)
Q Consensus 170 ~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~~~~~ykVv~~~~~~~~~~~~~~~~vy~s~t~~W~~~~~~ 249 (407)
+...++++|..|++.+.+...+. ......+.|. ++.-++.... .....+.+++.+++.-+.+...
T Consensus 224 g~~~i~~~dl~~g~~~~l~~~~g-----~~~~~~~SPD-----G~~la~~~~~-----~g~~~Iy~~d~~~~~~~~Lt~~ 288 (435)
T PRK05137 224 GRPRVYLLDLETGQRELVGNFPG-----MTFAPRFSPD-----GRKVVMSLSQ-----GGNTDIYTMDLRSGTTTRLTDS 288 (435)
T ss_pred CCCEEEEEECCCCcEEEeecCCC-----cccCcEECCC-----CCEEEEEEec-----CCCceEEEEECCCCceEEccCC
Confidence 45789999999998877754322 1123345554 3333333221 1234567778888766655432
Q ss_pred CCCCcccccccceEEECC-EEEEEec---CCcEEEEEcCCCeEeeEeCCCCCCCCccEEE-ecCeEEEEeeeC-C-CceE
Q 015428 250 CSEPDVLKLSINGFYMKG-FVYWTSL---SGAILVFDLKDEQYGILPLPARSGPYGALTQ-MHGELCYMLPQI-Q-DGEC 322 (407)
Q Consensus 250 ~~~~~~~~~~~~~v~~~G-~lYwl~~---~~~Il~fD~~~e~~~~i~lP~~~~~~~~l~~-~~G~L~~v~~~~-~-~~~w 322 (407)
.. . .......-+| .+++.+. ...|..+|+.+.....+...... ...... -+|+..++.... . ..++
T Consensus 289 ~~-~----~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~--~~~~~~SpdG~~ia~~~~~~~~~~i~ 361 (435)
T PRK05137 289 PA-I----DTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGR--YSTPVWSPRGDLIAFTKQGGGQFSIG 361 (435)
T ss_pred CC-c----cCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCc--ccCeEECCCCCEEEEEEcCCCceEEE
Confidence 11 0 0111222244 3444443 23688888887766655422111 111212 245444333322 1 2333
Q ss_pred EEEEcCCccceeeEeeeeecccccCcCCcceEEEeecCCEEEEec---C----CEEEEEECCCCeEEEeccc
Q 015428 323 LIGVYGNLDMSLKCVIPVEHEVLGETFSDCRVLTCVNSDILIILL---P----NKVIAYHVKAQKMQVVSET 387 (407)
Q Consensus 323 ~l~~~~~~~W~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~lll~~---~----~~l~~yd~~t~~~~~l~~~ 387 (407)
.+.. +.+. ...+ .. +. ....+....+|+.|++.. + ..|+.+|+.+++.+.+...
T Consensus 362 ~~d~-~~~~---~~~l--t~---~~--~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~~ 422 (435)
T PRK05137 362 VMKP-DGSG---ERIL--TS---GF--LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVPTP 422 (435)
T ss_pred EEEC-CCCc---eEec--cC---CC--CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEccCC
Confidence 3321 2121 1111 11 00 011122224677665532 1 3799999999988877643
No 100
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=26.61 E-value=66 Score=32.06 Aligned_cols=30 Identities=3% Similarity=0.168 Sum_probs=27.3
Q ss_pred ecCCEEEEecCCEEEEEECCCCeEEEeccc
Q 015428 358 VNSDILIILLPNKVIAYHVKAQKMQVVSET 387 (407)
Q Consensus 358 ~~g~~lll~~~~~l~~yd~~t~~~~~l~~~ 387 (407)
.+|..|+++..+.|+.||++|.+++++.+.
T Consensus 276 sDGkrIvFq~~GdIylydP~td~lekldI~ 305 (668)
T COG4946 276 SDGKRIVFQNAGDIYLYDPETDSLEKLDIG 305 (668)
T ss_pred CCCcEEEEecCCcEEEeCCCcCcceeeecC
Confidence 478899999999999999999999999865
No 101
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=26.31 E-value=5.5e+02 Score=24.10 Aligned_cols=140 Identities=16% Similarity=0.243 Sum_probs=78.0
Q ss_pred eEEeecCceEEEeeecccCCeEEEEEcCcccceeecCCCCcCCCCcceEEEEecCCCCCCCCCeEEEEEEeccCCCcceE
Q 015428 152 NIRTTCNGLVCCQSVFEVGNFFYYICNPVTKEWHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAVPVDQNDVSII 231 (407)
Q Consensus 152 ~i~~s~~GLll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~~~~~ykVv~~~~~~~~~~~~~ 231 (407)
.+.-+-+|-|-+.. ..+..+==.||.||+..+.|.....+ ...+ ..+|+ ++.. |+ +.. .
T Consensus 66 dvapapdG~VWft~---qg~gaiGhLdP~tGev~~ypLg~Ga~--Phgi--v~gpd----g~~W--it-------d~~-~ 124 (353)
T COG4257 66 DVAPAPDGAVWFTA---QGTGAIGHLDPATGEVETYPLGSGAS--PHGI--VVGPD----GSAW--IT-------DTG-L 124 (353)
T ss_pred ccccCCCCceEEec---CccccceecCCCCCceEEEecCCCCC--CceE--EECCC----CCee--Ee-------cCc-c
Confidence 34456678777765 34555666899999999988765432 1222 33343 1110 00 000 1
Q ss_pred EEEEEeCCCCcccccCCCCCCCccccccc-ceEEE-CCEEEEEecCCcEEEEEcCCCeEeeEeCCCCCCCCccEEEecCe
Q 015428 232 FFEIYSSRSRSWRTTDTICSEPDVLKLSI-NGFYM-KGFVYWTSLSGAILVFDLKDEQYGILPLPARSGPYGALTQMHGE 309 (407)
Q Consensus 232 ~~~vy~s~t~~W~~~~~~~~~~~~~~~~~-~~v~~-~G~lYwl~~~~~Il~fD~~~e~~~~i~lP~~~~~~~~l~~~~G~ 309 (407)
.+.-+|.++..=++.. .+......+. ..|+- .|.+++..+.+.--.+|+.+...++++.|+........+.-+|.
T Consensus 125 aI~R~dpkt~evt~f~---lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGs 201 (353)
T COG4257 125 AIGRLDPKTLEVTRFP---LPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGS 201 (353)
T ss_pred eeEEecCcccceEEee---cccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCc
Confidence 2222333332222111 1111111122 33333 36776666666667899999999999999877766666667888
Q ss_pred EEEEee
Q 015428 310 LCYMLP 315 (407)
Q Consensus 310 L~~v~~ 315 (407)
+.+...
T Consensus 202 vwyasl 207 (353)
T COG4257 202 VWYASL 207 (353)
T ss_pred EEEEec
Confidence 887643
No 102
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=25.88 E-value=2.8e+02 Score=26.43 Aligned_cols=55 Identities=13% Similarity=0.240 Sum_probs=40.6
Q ss_pred cccceEEECCEEEEEec-CCcEEEEEcCCCeEeeE-eCCCCCCCCccEEEecCeEEEEeee
Q 015428 258 LSINGFYMKGFVYWTSL-SGAILVFDLKDEQYGIL-PLPARSGPYGALTQMHGELCYMLPQ 316 (407)
Q Consensus 258 ~~~~~v~~~G~lYwl~~-~~~Il~fD~~~e~~~~i-~lP~~~~~~~~l~~~~G~L~~v~~~ 316 (407)
+..++-..+|.||.+-. .+.+..+|+.++++..+ .+|-... -|+-. |++.+|...
T Consensus 204 mPhSPRWhdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~r---GL~f~-G~llvVgmS 260 (335)
T TIGR03032 204 MPHSPRWYQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTR---GLAFA-GDFAFVGLS 260 (335)
T ss_pred CCcCCcEeCCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCc---cccee-CCEEEEEec
Confidence 45678889999998764 68999999998888776 6775432 33333 888887765
No 103
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=25.60 E-value=6.5e+02 Score=25.85 Aligned_cols=78 Identities=12% Similarity=0.065 Sum_probs=45.7
Q ss_pred EEEEEeCCCC--cccccCCCCCCCcccccccceEEECCEEEEEe-cCCcEEEEEcCCC-eEeeEeCCCCCCCCccEEEec
Q 015428 232 FFEIYSSRSR--SWRTTDTICSEPDVLKLSINGFYMKGFVYWTS-LSGAILVFDLKDE-QYGILPLPARSGPYGALTQMH 307 (407)
Q Consensus 232 ~~~vy~s~t~--~W~~~~~~~~~~~~~~~~~~~v~~~G~lYwl~-~~~~Il~fD~~~e-~~~~i~lP~~~~~~~~l~~~~ 307 (407)
.+.-.|..|+ .|+.-...+ .....+...|-+++.. .++.+.+||.++. ..-.++++.........-+.+
T Consensus 442 ~l~AiD~~tGk~~W~~~~~~p-------~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~ 514 (527)
T TIGR03075 442 SLIAWDPITGKIVWEHKEDFP-------LWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQD 514 (527)
T ss_pred eEEEEeCCCCceeeEecCCCC-------CCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeC
Confidence 3455677776 587543211 1223345555566554 4789999999874 333457775433233333579
Q ss_pred CeEEEEeee
Q 015428 308 GELCYMLPQ 316 (407)
Q Consensus 308 G~L~~v~~~ 316 (407)
|+++++...
T Consensus 515 G~qYv~~~~ 523 (527)
T TIGR03075 515 GKQYVAVLS 523 (527)
T ss_pred CEEEEEEEe
Confidence 999987653
No 104
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=25.39 E-value=8.1e+02 Score=25.78 Aligned_cols=171 Identities=15% Similarity=0.081 Sum_probs=85.4
Q ss_pred EeecCceEEEeeecccCCeEEEEEcCcccceee-cCCCCcCCCCcceEEEEecCCCCCCCCCeEEEEEEeccCCCcceEE
Q 015428 154 RTTCNGLVCCQSVFEVGNFFYYICNPVTKEWHV-LPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAVPVDQNDVSIIF 232 (407)
Q Consensus 154 ~~s~~GLll~~~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~l~~d~~~~~~~~~ykVv~~~~~~~~~~~~~~ 232 (407)
+.+++-++++... ....+|=.+|.-..-.. +-..+... ..+..+.|.-. +. |++.+.. ....
T Consensus 390 iSPdg~~Ia~st~---~~~~iy~L~~~~~vk~~~v~~~~~~~--~~a~~i~ftid-----~~-k~~~~s~------~~~~ 452 (691)
T KOG2048|consen 390 ISPDGNLIAISTV---SRTKIYRLQPDPNVKVINVDDVPLAL--LDASAISFTID-----KN-KLFLVSK------NIFS 452 (691)
T ss_pred cCCCCCEEEEeec---cceEEEEeccCcceeEEEeccchhhh--ccceeeEEEec-----Cc-eEEEEec------ccce
Confidence 4466666776653 45667777775422211 11122111 12233333221 12 4444331 2357
Q ss_pred EEEEeCCCCcccccCCCCCCCcccccccceEEECCEEEE-EecCCcEEEEEcCCCeEeeEe--CCCCCCCCccEEEecCe
Q 015428 233 FEIYSSRSRSWRTTDTICSEPDVLKLSINGFYMKGFVYW-TSLSGAILVFDLKDEQYGILP--LPARSGPYGALTQMHGE 309 (407)
Q Consensus 233 ~~vy~s~t~~W~~~~~~~~~~~~~~~~~~~v~~~G~lYw-l~~~~~Il~fD~~~e~~~~i~--lP~~~~~~~~l~~~~G~ 309 (407)
++++..++.+-++..........-....-.+.-+|-... ++..+.|.+||+++.+.+.+. ++...+....-....++
T Consensus 453 le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~ 532 (691)
T KOG2048|consen 453 LEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNR 532 (691)
T ss_pred eEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCc
Confidence 888988888888766542221110111122333454333 445689999999998887764 33222222222244677
Q ss_pred EEEEeeeCCCceEEEEEcCCccceeeEeeeee
Q 015428 310 LCYMLPQIQDGECLIGVYGNLDMSLKCVIPVE 341 (407)
Q Consensus 310 L~~v~~~~~~~~w~l~~~~~~~W~~~~~i~l~ 341 (407)
|.++....+.....++...-.+|+....-.++
T Consensus 533 lvvats~nQv~efdi~~~~l~~ws~~nt~nlp 564 (691)
T KOG2048|consen 533 LVVATSNNQVFEFDIEARNLTRWSKNNTRNLP 564 (691)
T ss_pred EEEEecCCeEEEEecchhhhhhhhhccccccc
Confidence 87777764433333333223567766664444
No 105
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=25.07 E-value=2.8e+02 Score=21.58 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=27.1
Q ss_pred eEEEEEcCcccc-eeecCCCCcCCCCcceEEEEecCCCCCCCCCeEEEEEE
Q 015428 172 FFYYICNPVTKE-WHVLPQPKFFHGPETAVALVFEPSALGFSAHYEVVCAV 221 (407)
Q Consensus 172 ~~~~V~NP~T~~-~~~LP~~~~~~~~~~~~~l~~d~~~~~~~~~ykVv~~~ 221 (407)
-+++..+|-+++ |... .....+.+..|.. ...|.|..+.
T Consensus 16 A~v~~~~p~~~~~W~~~-------~~~g~v~~v~d~~----~~~y~I~~~~ 55 (111)
T PF00568_consen 16 AQVYQADPDTKRQWSPV-------KGTGVVCFVKDNS----RRSYFIRLYD 55 (111)
T ss_dssp EEEEEEETTTSESEEES-------SSEEEEEEEEETT----TTEEEEEEEE
T ss_pred EEEEEEEcCCCCcEeeC-------CeEEEEEEEEECC----CCEEEEEEEE
Confidence 568899999988 8776 1224466677766 5778877665
No 106
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=22.99 E-value=1.1e+02 Score=21.26 Aligned_cols=18 Identities=17% Similarity=0.366 Sum_probs=15.1
Q ss_pred CEEEEEECCCCeEEEecc
Q 015428 369 NKVIAYHVKAQKMQVVSE 386 (407)
Q Consensus 369 ~~l~~yd~~t~~~~~l~~ 386 (407)
-+||.||.++++++-+..
T Consensus 41 iKIfkyd~~tNei~L~KE 58 (63)
T PF14157_consen 41 IKIFKYDEDTNEITLKKE 58 (63)
T ss_dssp EEEEEEETTTTEEEEEEE
T ss_pred EEEEEeCCCCCeEEEEEe
Confidence 379999999999887653
No 107
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.59 E-value=6.3e+02 Score=23.49 Aligned_cols=49 Identities=20% Similarity=0.158 Sum_probs=32.1
Q ss_pred CCEEEEEecCCcEEEEEcCCCeEeeEe-----C-----CCCCCCCccEEEecCeEEEEe
Q 015428 266 KGFVYWTSLSGAILVFDLKDEQYGILP-----L-----PARSGPYGALTQMHGELCYML 314 (407)
Q Consensus 266 ~G~lYwl~~~~~Il~fD~~~e~~~~i~-----l-----P~~~~~~~~l~~~~G~L~~v~ 314 (407)
+|.+|.....+.+++.......+.++= . |........++..+|.|....
T Consensus 147 ~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~ 205 (354)
T KOG4649|consen 147 DGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFD 205 (354)
T ss_pred CceEEEEeccceEEEEccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEc
Confidence 578888877888888888766554431 2 333344556666788777665
No 108
>PF11012 DUF2850: Protein of unknown function (DUF2850); InterPro: IPR021271 This family of proteins with unknown function appear to be restricted to Vibrionaceae.
Probab=22.46 E-value=2.3e+02 Score=20.83 Aligned_cols=46 Identities=17% Similarity=0.303 Sum_probs=27.9
Q ss_pred CcccccCCCCCCCcccccccceEEECCEEEEEe--cCCcEEEEEcCCC
Q 015428 241 RSWRTTDTICSEPDVLKLSINGFYMKGFVYWTS--LSGAILVFDLKDE 286 (407)
Q Consensus 241 ~~W~~~~~~~~~~~~~~~~~~~v~~~G~lYwl~--~~~~Il~fD~~~e 286 (407)
|.|.+....+.....+-....+|+.||.+-=.. .++..+.|-..+.
T Consensus 4 G~WvE~~va~Ya~e~~~l~~~GV~~ngrlV~T~F~fDG~~l~~~~G~~ 51 (79)
T PF11012_consen 4 GTWVEQGVAPYAAEEFTLNESGVFRNGRLVATSFEFDGKTLEYRTGSG 51 (79)
T ss_pred eEEEECCCCCccccEEEECCCcEEECCCEEeeEEEECCCEEEEEECCe
Confidence 578887765444444556788999999774322 2455555554443
No 109
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=21.81 E-value=7e+02 Score=23.71 Aligned_cols=168 Identities=17% Similarity=0.228 Sum_probs=83.9
Q ss_pred ceEEEEecCCCCCCCCCeEEEEEEeccCCCcceEEEEEEeCCCCc--ccccCCCCCCCcccccccceEEE-CC-EEEEEe
Q 015428 198 TAVALVFEPSALGFSAHYEVVCAVPVDQNDVSIIFFEIYSSRSRS--WRTTDTICSEPDVLKLSINGFYM-KG-FVYWTS 273 (407)
Q Consensus 198 ~~~~l~~d~~~~~~~~~ykVv~~~~~~~~~~~~~~~~vy~s~t~~--W~~~~~~~~~~~~~~~~~~~v~~-~G-~lYwl~ 273 (407)
....+.++|. ++|-+|.-.. .+ .+.+|+...+. .........+... .++..++. +| .+|...
T Consensus 145 h~H~v~~~pd-----g~~v~v~dlG-----~D--~v~~~~~~~~~~~l~~~~~~~~~~G~--GPRh~~f~pdg~~~Yv~~ 210 (345)
T PF10282_consen 145 HPHQVVFSPD-----GRFVYVPDLG-----AD--RVYVYDIDDDTGKLTPVDSIKVPPGS--GPRHLAFSPDGKYAYVVN 210 (345)
T ss_dssp CEEEEEE-TT-----SSEEEEEETT-----TT--EEEEEEE-TTS-TEEEEEEEECSTTS--SEEEEEE-TTSSEEEEEE
T ss_pred cceeEEECCC-----CCEEEEEecC-----CC--EEEEEEEeCCCceEEEeeccccccCC--CCcEEEEcCCcCEEEEec
Confidence 3455677775 5655544221 12 56777665544 4432211111100 11122222 44 677776
Q ss_pred c-CCcEEEEEcC--CCeEeeEe----CCCCCCC---CccEEEe-cCeEEEEeeeCCCceEEEEEcC-CccceeeEeeeee
Q 015428 274 L-SGAILVFDLK--DEQYGILP----LPARSGP---YGALTQM-HGELCYMLPQIQDGECLIGVYG-NLDMSLKCVIPVE 341 (407)
Q Consensus 274 ~-~~~Il~fD~~--~e~~~~i~----lP~~~~~---~~~l~~~-~G~L~~v~~~~~~~~w~l~~~~-~~~W~~~~~i~l~ 341 (407)
+ ++.|.+|+.. +..+..+. +|..... ...+... +|+..++..+.+..+......+ ++...+...+..
T Consensus 211 e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~- 289 (345)
T PF10282_consen 211 ELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT- 289 (345)
T ss_dssp TTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE-
T ss_pred CCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC-
Confidence 5 5678888887 66676553 4443221 1233333 6887777776656665555422 233333333322
Q ss_pred cccccCcCCcceEEEe-ecCCEEEEec--CCEEEEE--ECCCCeEEEecc
Q 015428 342 HEVLGETFSDCRVLTC-VNSDILIILL--PNKVIAY--HVKAQKMQVVSE 386 (407)
Q Consensus 342 ~~~~~~~~~~~~~~~~-~~g~~lll~~--~~~l~~y--d~~t~~~~~l~~ 386 (407)
-| ...+.+.+ .+|+.|++.. .+.+..| |.++++++.+..
T Consensus 290 ---~G---~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 290 ---GG---KFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp ---SS---SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred ---CC---CCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecc
Confidence 12 12355556 4778777643 3455554 668999888763
No 110
>PF07370 DUF1489: Protein of unknown function (DUF1489); InterPro: IPR008320 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.65 E-value=72 Score=26.10 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=17.1
Q ss_pred ceEEECCEEEEEec-----CCcEEEEEcCC
Q 015428 261 NGFYMKGFVYWTSL-----SGAILVFDLKD 285 (407)
Q Consensus 261 ~~v~~~G~lYwl~~-----~~~Il~fD~~~ 285 (407)
.-+.-+|++||+.. ...|+.|+..+
T Consensus 42 ~Ell~GGSlYWVikg~i~~RQ~Il~i~~~~ 71 (137)
T PF07370_consen 42 DELLDGGSLYWVIKGQIQCRQRILDIEEVT 71 (137)
T ss_pred HHhccCCcEEEEECCEEEEeeeeeeeeEec
Confidence 44556899999875 24677777554
Done!