Query 015430
Match_columns 407
No_of_seqs 341 out of 2541
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 06:14:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015430.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015430hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02713 hypothetical protein; 99.9 6.7E-27 1.4E-31 237.7 16.4 157 188-360 10-168 (557)
2 KOG4350 Uncharacterized conser 99.9 3.7E-27 7.9E-32 216.0 11.2 171 188-372 29-199 (620)
3 PHA03098 kelch-like protein; P 99.9 1E-25 2.2E-30 230.0 15.8 143 200-360 6-150 (534)
4 KOG4441 Proteins containing BT 99.9 1.4E-25 3E-30 227.4 16.0 160 187-360 20-179 (571)
5 PHA02790 Kelch-like protein; P 99.9 6E-26 1.3E-30 227.4 12.5 154 191-360 10-167 (480)
6 cd03774 MATH_SPOP Speckle-type 99.9 2.4E-22 5.2E-27 168.0 14.5 131 32-172 2-138 (139)
7 cd03780 MATH_TRAF5 Tumor Necro 99.9 2.3E-22 5E-27 167.9 13.1 131 35-169 1-148 (148)
8 cd03772 MATH_HAUSP Herpesvirus 99.9 3.6E-22 7.8E-27 166.4 14.2 126 34-172 2-134 (137)
9 cd03777 MATH_TRAF3 Tumor Necro 99.9 6.7E-22 1.5E-26 171.0 13.5 134 33-170 37-185 (186)
10 cd03781 MATH_TRAF4 Tumor Necro 99.9 1E-21 2.2E-26 166.5 12.6 132 35-169 1-154 (154)
11 cd03776 MATH_TRAF6 Tumor Necro 99.9 8.4E-22 1.8E-26 166.1 10.8 131 35-169 1-147 (147)
12 cd03779 MATH_TRAF1 Tumor Necro 99.9 1.6E-21 3.5E-26 161.9 12.3 130 35-169 1-147 (147)
13 cd00270 MATH_TRAF_C Tumor Necr 99.9 1.8E-21 3.9E-26 164.8 11.4 132 35-169 1-149 (149)
14 cd03775 MATH_Ubp21p Ubiquitin- 99.9 4.4E-21 9.5E-26 159.1 13.4 118 36-169 2-134 (134)
15 cd03773 MATH_TRIM37 Tripartite 99.9 3E-21 6.6E-26 160.0 12.4 124 34-169 4-130 (132)
16 cd03771 MATH_Meprin Meprin fam 99.8 1.3E-20 2.9E-25 159.3 12.8 134 34-169 1-167 (167)
17 KOG4591 Uncharacterized conser 99.8 1E-19 2.3E-24 152.2 9.5 166 188-372 51-219 (280)
18 KOG2075 Topoisomerase TOP1-int 99.8 4.7E-19 1E-23 166.8 14.8 176 182-372 93-274 (521)
19 PF00651 BTB: BTB/POZ domain; 99.8 1.9E-19 4.1E-24 144.4 9.8 107 194-312 1-110 (111)
20 cd00121 MATH MATH (meprin and 99.8 1.4E-18 3E-23 142.2 14.1 120 35-169 1-126 (126)
21 cd03778 MATH_TRAF2 Tumor Necro 99.8 2.2E-18 4.9E-23 144.6 12.6 135 32-169 16-164 (164)
22 PF00917 MATH: MATH domain; I 99.7 2.5E-17 5.4E-22 133.7 10.8 113 41-170 1-119 (119)
23 KOG4682 Uncharacterized conser 99.7 4.3E-17 9.3E-22 150.2 12.8 151 194-359 60-214 (488)
24 KOG0783 Uncharacterized conser 99.7 2.3E-17 4.9E-22 163.5 8.2 167 201-376 708-876 (1267)
25 smart00225 BTB Broad-Complex, 99.7 1.9E-16 4E-21 121.2 9.1 90 205-306 1-90 (90)
26 cd03783 MATH_Meprin_Alpha Mepr 99.6 1.1E-15 2.4E-20 127.6 10.5 134 35-168 2-166 (167)
27 cd03782 MATH_Meprin_Beta Mepri 99.6 5.8E-15 1.3E-19 122.5 11.2 132 35-168 2-166 (167)
28 smart00061 MATH meprin and TRA 99.5 1.2E-13 2.6E-18 107.1 9.7 89 37-146 2-95 (95)
29 KOG1987 Speckle-type POZ prote 99.5 9.1E-13 2E-17 124.6 14.9 234 39-360 8-248 (297)
30 COG5077 Ubiquitin carboxyl-ter 99.2 1.7E-11 3.7E-16 121.4 6.8 124 32-172 36-172 (1089)
31 KOG0783 Uncharacterized conser 98.7 1.8E-08 3.8E-13 101.3 6.8 123 185-307 536-683 (1267)
32 KOG0511 Ankyrin repeat protein 98.7 5.9E-08 1.3E-12 89.7 7.6 132 213-359 301-442 (516)
33 KOG2838 Uncharacterized conser 98.3 7.9E-07 1.7E-11 78.9 5.7 133 188-320 220-395 (401)
34 KOG2838 Uncharacterized conser 98.3 1.2E-06 2.6E-11 77.8 5.6 106 186-300 113-220 (401)
35 KOG2716 Polymerase delta-inter 98.1 2.9E-05 6.2E-10 68.9 10.0 96 206-312 7-104 (230)
36 PF02214 BTB_2: BTB/POZ domain 97.7 4.3E-05 9.4E-10 58.9 4.3 88 206-305 1-94 (94)
37 KOG3473 RNA polymerase II tran 97.5 0.00065 1.4E-08 50.8 8.0 86 206-298 19-112 (112)
38 PF11822 DUF3342: Domain of un 97.1 0.00048 1E-08 63.8 4.4 88 213-312 14-103 (317)
39 smart00512 Skp1 Found in Skp1 96.8 0.0071 1.5E-07 47.4 8.1 91 206-298 4-104 (104)
40 PF07707 BACK: BTB And C-termi 96.7 0.0022 4.7E-08 50.0 4.3 50 318-372 1-50 (103)
41 PF03931 Skp1_POZ: Skp1 family 96.6 0.015 3.3E-07 40.8 7.5 56 206-264 3-59 (62)
42 KOG1863 Ubiquitin carboxyl-ter 96.6 0.0031 6.7E-08 69.5 5.8 164 38-235 30-201 (1093)
43 KOG1724 SCF ubiquitin ligase, 96.5 0.013 2.9E-07 49.4 7.9 108 211-320 13-134 (162)
44 KOG1665 AFH1-interacting prote 96.1 0.017 3.7E-07 50.4 6.6 94 204-308 9-106 (302)
45 KOG2714 SETA binding protein S 96.1 0.02 4.3E-07 54.9 7.5 91 206-309 13-111 (465)
46 KOG0511 Ankyrin repeat protein 96.0 0.0088 1.9E-07 56.2 4.4 101 192-306 135-239 (516)
47 smart00875 BACK BTB And C-term 95.6 0.011 2.3E-07 45.7 2.9 41 318-360 1-41 (101)
48 KOG0297 TNF receptor-associate 94.6 0.023 5.1E-07 55.5 2.7 78 32-110 277-365 (391)
49 KOG1778 CREB binding protein/P 94.6 0.014 3E-07 54.9 0.9 145 205-362 28-173 (319)
50 COG5201 SKP1 SCF ubiquitin lig 92.6 1.2 2.6E-05 35.5 8.6 110 205-317 3-126 (158)
51 PF01466 Skp1: Skp1 family, di 91.6 0.39 8.4E-06 35.4 4.6 48 281-328 11-61 (78)
52 KOG2715 Uncharacterized conser 90.2 1.5 3.2E-05 36.8 7.1 97 204-312 21-121 (210)
53 KOG2075 Topoisomerase TOP1-int 88.7 0.86 1.9E-05 44.7 5.5 58 313-375 185-247 (521)
54 KOG2723 Uncharacterized conser 70.6 14 0.0003 33.0 6.3 96 202-308 6-105 (221)
55 KOG3840 Uncharaterized conserv 62.0 13 0.00027 34.6 4.3 85 203-298 95-184 (438)
56 PF07707 BACK: BTB And C-termi 59.7 24 0.00051 26.8 5.2 59 287-347 2-74 (103)
57 PF00651 BTB: BTB/POZ domain; 56.4 11 0.00023 29.2 2.7 29 314-342 80-108 (111)
58 PHA03098 kelch-like protein; P 52.5 24 0.00052 36.1 5.3 30 313-342 73-102 (534)
59 PF11822 DUF3342: Domain of un 52.0 5.5 0.00012 37.5 0.4 41 312-354 71-111 (317)
60 KOG4682 Uncharacterized conser 33.5 36 0.00078 33.1 2.7 32 281-312 170-201 (488)
61 PHA02713 hypothetical protein; 32.0 66 0.0014 33.3 4.7 31 312-342 90-120 (557)
62 smart00875 BACK BTB And C-term 29.8 59 0.0013 24.2 3.0 26 287-312 2-27 (101)
63 PF02519 Auxin_inducible: Auxi 28.5 2.2E+02 0.0048 21.9 5.9 55 205-262 40-99 (100)
64 PF09593 Pathogen_betaC1: Beta 28.5 54 0.0012 26.1 2.5 54 211-267 20-77 (117)
65 PHA02790 Kelch-like protein; P 28.4 86 0.0019 31.7 4.7 32 281-312 120-151 (480)
66 KOG1077 Vesicle coat complex A 25.5 2.9E+02 0.0063 29.3 7.6 68 281-359 420-487 (938)
67 PF02637 GatB_Yqey: GatB domai 22.3 2.7E+02 0.0059 22.9 5.9 24 245-268 33-58 (148)
No 1
>PHA02713 hypothetical protein; Provisional
Probab=99.95 E-value=6.7e-27 Score=237.69 Aligned_cols=157 Identities=20% Similarity=0.301 Sum_probs=148.3
Q ss_pred CcHHHHHHHhHhcCCCcceEEEEc-CeEEEeehhhHhhcCHHHHHhhcCCCCCCC-cceEEecCCCHHHHHHHHhhhhcC
Q 015430 188 SNIGQHFGQLLESGKRTDVNFEVN-GETFAAHKLVLAARSPVFRAQLYGPMKDQN-TQCIKVEDMEAPVFKALLHFIYWD 265 (407)
Q Consensus 188 ~~~~~~l~~l~~~~~~sDv~i~v~-~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~~i~l~~~~~~~f~~~L~~iYt~ 265 (407)
..+++.|..|+.++.+|||+|.++ |++|+|||.|||++|+||++||.++++|.. +++|.|+++++++|+.+|+|+||+
T Consensus 10 ~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~ 89 (557)
T PHA02713 10 RRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNR 89 (557)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCC
Confidence 467799999999999999999997 899999999999999999999999999864 789999999999999999999998
Q ss_pred CCCCchhhccCCcccchHHHHHHHHHHHhhcCchhHHHHHHHHHhhcCChhhHHHHHHHHHhcCchHHHHHHHHhccCcc
Q 015430 266 SLPDMEELTGMSSKWASTLMSQHLLAAADRYGLERLRLLCEANLCEDVAINTVATTLALAEQHHCFQLKSVCLKFVAMPE 345 (407)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~v~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~ 345 (407)
.+ +.+++++||.+|++|+++.|++.|+++|.+.++.+||+.++.+|..+.+..|.+.|.+||. +
T Consensus 90 ~i--------------~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~--~ 153 (557)
T PHA02713 90 HI--------------SSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLM--S 153 (557)
T ss_pred CC--------------CHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHH--H
Confidence 74 4689999999999999999999999999999999999999999999999899999999999 9
Q ss_pred cHHHHhcchhhhHHH
Q 015430 346 NLRAVMQTDGFEYLK 360 (407)
Q Consensus 346 ~~~~l~~~~~f~~L~ 360 (407)
||.++.++++|.+|+
T Consensus 154 ~f~~v~~~~ef~~L~ 168 (557)
T PHA02713 154 NIPTLITTDAFKKTV 168 (557)
T ss_pred HHHHHhCChhhhhCC
Confidence 999999999998775
No 2
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.94 E-value=3.7e-27 Score=215.97 Aligned_cols=171 Identities=30% Similarity=0.472 Sum_probs=159.8
Q ss_pred CcHHHHHHHhHhcCCCcceEEEEcCeEEEeehhhHhhcCHHHHHhhcCCCCCCCcceEEecCCCHHHHHHHHhhhhcCCC
Q 015430 188 SNIGQHFGQLLESGKRTDVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIYWDSL 267 (407)
Q Consensus 188 ~~~~~~l~~l~~~~~~sDv~i~v~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~ 267 (407)
..+.+++.+++.+.+++||+|+|++++|+|||.|||+||.||++|++++|.|+.+..|+|++...++|+++|+|||+|.+
T Consensus 29 ~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~ 108 (620)
T KOG4350|consen 29 NNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKI 108 (620)
T ss_pred cchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcce
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCchhhccCCcccchHHHHHHHHHHHhhcCchhHHHHHHHHHhhcCChhhHHHHHHHHHhcCchHHHHHHHHhccCcccH
Q 015430 268 PDMEELTGMSSKWASTLMSQHLLAAADRYGLERLRLLCEANLCEDVAINTVATTLALAEQHHCFQLKSVCLKFVAMPENL 347 (407)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~v~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~ 347 (407)
.... ...+...+.|.+|++|++..|.....++|.+.+..+|++.++..|..|++.+|.+.|+.|+. .|.
T Consensus 109 ~l~~---------~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmD--rnA 177 (620)
T KOG4350|consen 109 DLAG---------VEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMD--RNA 177 (620)
T ss_pred eccc---------chHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHh--cCH
Confidence 7544 66788999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHhcchhhhHHHhhChHHHHHHHH
Q 015430 348 RAVMQTDGFEYLKESCPSLLTELLE 372 (407)
Q Consensus 348 ~~l~~~~~f~~L~~~~p~l~~ell~ 372 (407)
.+++..+.|..|++ +-++++|.
T Consensus 178 ~~lL~~~sFn~LSk---~sL~e~l~ 199 (620)
T KOG4350|consen 178 DQLLEDPSFNRLSK---DSLKELLA 199 (620)
T ss_pred HhhhcCcchhhhhH---HHHHHHHh
Confidence 99999999999986 35555554
No 3
>PHA03098 kelch-like protein; Provisional
Probab=99.93 E-value=1e-25 Score=230.00 Aligned_cols=143 Identities=18% Similarity=0.300 Sum_probs=137.9
Q ss_pred cCCCcceEEEE--cCeEEEeehhhHhhcCHHHHHhhcCCCCCCCcceEEecCCCHHHHHHHHhhhhcCCCCCchhhccCC
Q 015430 200 SGKRTDVNFEV--NGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIYWDSLPDMEELTGMS 277 (407)
Q Consensus 200 ~~~~sDv~i~v--~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~~ 277 (407)
++.+|||+|.+ +|++|+|||.||+++|+||++||.+++. +.+|.|++ ++++|+.+|+|+|||.+.
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~--------- 72 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKIN--------- 72 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceE---------
Confidence 78899999998 9999999999999999999999999887 57899999 999999999999999997
Q ss_pred cccchHHHHHHHHHHHhhcCchhHHHHHHHHHhhcCChhhHHHHHHHHHhcCchHHHHHHHHhccCcccHHHHhcchhhh
Q 015430 278 SKWASTLMSQHLLAAADRYGLERLRLLCEANLCEDVAINTVATTLALAEQHHCFQLKSVCLKFVAMPENLRAVMQTDGFE 357 (407)
Q Consensus 278 ~~~~~~~~~~~ll~~A~~~~v~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~l~~~~~f~ 357 (407)
++.+++.+||.+|++|+++.|+..|+++|.+.++.+||+.++.+|..|++..|++.|.+||. .|+.++.++++|.
T Consensus 73 ---i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~--~nf~~v~~~~~f~ 147 (534)
T PHA03098 73 ---ITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIR--NNIELIYNDPDFI 147 (534)
T ss_pred ---EcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHH--HHHHHHhcCchhh
Confidence 88899999999999999999999999999999999999999999999999999999999999 9999999999998
Q ss_pred HHH
Q 015430 358 YLK 360 (407)
Q Consensus 358 ~L~ 360 (407)
+|+
T Consensus 148 ~l~ 150 (534)
T PHA03098 148 YLS 150 (534)
T ss_pred cCC
Confidence 886
No 4
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.93 E-value=1.4e-25 Score=227.36 Aligned_cols=160 Identities=28% Similarity=0.371 Sum_probs=155.0
Q ss_pred CCcHHHHHHHhHhcCCCcceEEEEcCeEEEeehhhHhhcCHHHHHhhcCCCCCCCcceEEecCCCHHHHHHHHhhhhcCC
Q 015430 187 PSNIGQHFGQLLESGKRTDVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIYWDS 266 (407)
Q Consensus 187 ~~~~~~~l~~l~~~~~~sDv~i~v~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~ 266 (407)
...+.+.+..+...+.+|||++.+++++|+|||.|||+.||||++||.++++|+.+.+|.|.++++..++.+|+|+||+.
T Consensus 20 ~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~ 99 (571)
T KOG4441|consen 20 SKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGK 99 (571)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcce
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhccCCcccchHHHHHHHHHHHhhcCchhHHHHHHHHHhhcCChhhHHHHHHHHHhcCchHHHHHHHHhccCccc
Q 015430 267 LPDMEELTGMSSKWASTLMSQHLLAAADRYGLERLRLLCEANLCEDVAINTVATTLALAEQHHCFQLKSVCLKFVAMPEN 346 (407)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~v~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~ 346 (407)
+. ++.+++++||.+|+.||+..+.+.|.++|.+.+.++||+.+..+|+.|++..|.+.+-.|+. .|
T Consensus 100 i~------------i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~--~~ 165 (571)
T KOG4441|consen 100 LE------------ISEDNVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYIL--QH 165 (571)
T ss_pred EE------------echHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH--HH
Confidence 98 89999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHhcchhhhHHH
Q 015430 347 LRAVMQTDGFEYLK 360 (407)
Q Consensus 347 ~~~l~~~~~f~~L~ 360 (407)
|.++.++++|..|+
T Consensus 166 F~~v~~~eefl~L~ 179 (571)
T KOG4441|consen 166 FAEVSKTEEFLLLS 179 (571)
T ss_pred HHHHhccHHhhCCC
Confidence 99999999998876
No 5
>PHA02790 Kelch-like protein; Provisional
Probab=99.93 E-value=6e-26 Score=227.44 Aligned_cols=154 Identities=16% Similarity=0.199 Sum_probs=140.2
Q ss_pred HHHHHHhHhcCCCcceEEEEcCeEEEeehhhHhhcCHHHHHhhcCCCCCCCcceEEe--cCCCHHHHHHHHhhhhcCCCC
Q 015430 191 GQHFGQLLESGKRTDVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKV--EDMEAPVFKALLHFIYWDSLP 268 (407)
Q Consensus 191 ~~~l~~l~~~~~~sDv~i~v~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l--~~~~~~~f~~~L~~iYt~~~~ 268 (407)
-+++..+...+.++||++.+|+ +|+|||.|||+.|+||++||.+++.|++. +|.+ .++++++++.+|+|+|||.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~-~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~ 87 (480)
T PHA02790 10 CKNILALSMTKKFKTIIEAIGG-NIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVY 87 (480)
T ss_pred hhhHHHHHhhhhhceEEEEcCc-EEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEE
Confidence 3556677778999999776654 99999999999999999999999999864 5665 389999999999999999998
Q ss_pred CchhhccCCcccchHHHHHHHHHHHhhcCchhHHHHHHHHHhhcCChhhHHHHHHHHHhcCchHHHHHHHHhccCcccHH
Q 015430 269 DMEELTGMSSKWASTLMSQHLLAAADRYGLERLRLLCEANLCEDVAINTVATTLALAEQHHCFQLKSVCLKFVAMPENLR 348 (407)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~ll~~A~~~~v~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~ 348 (407)
++.+++++||.+|++|+++.+++.|+++|.+.|+++||+.++.+|+.|++..|++.+.+||. +||.
T Consensus 88 ------------it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~--~nF~ 153 (480)
T PHA02790 88 ------------IDSHNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIA--KHFL 153 (480)
T ss_pred ------------EecccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHH--HhHH
Confidence 88999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHhcc--hhhhHHH
Q 015430 349 AVMQT--DGFEYLK 360 (407)
Q Consensus 349 ~l~~~--~~f~~L~ 360 (407)
++.++ ++|..|+
T Consensus 154 ~v~~~~~~ef~~L~ 167 (480)
T PHA02790 154 ELEDDIIDNFDYLS 167 (480)
T ss_pred HHhcccchhhhhCC
Confidence 99986 7786543
No 6
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.89 E-value=2.4e-22 Score=167.96 Aligned_cols=131 Identities=31% Similarity=0.662 Sum_probs=106.2
Q ss_pred eeeeEEEEEEcCccccccCCCCCceecCceeecC---eEEEEEEeCCCCCCCCCCCeEEEEEEeec-CCceeEEEEEEEE
Q 015430 32 TVNGSHQFKITGYSLSKGLGIGKYIASDTFMVGG---YAWAIYFYPDGKSVEDNAAYVSLFIALAS-EGTDVRALFELTL 107 (407)
Q Consensus 32 ~~~~~~~w~I~nfs~~~~~~~g~~~~S~~F~~gg---~~W~l~~yp~g~~~~~~~~~lsl~L~~~~-~~w~v~a~~~~~l 107 (407)
+...+|.|+|+|||.+++ ..|+.+.|++|.+|| ++|+|.+||+|.. +++.+|+|+||.+.+ ..+++.|+|+|.|
T Consensus 2 ~~~~~~~w~I~~fS~~~~-~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~-~~~~~~iSlyL~l~~~~~~~v~a~f~~~l 79 (139)
T cd03774 2 VVKFCYMWTISNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCPKSEVRAKFKFSI 79 (139)
T ss_pred ceEEEEEEEECCchhhhh-cCCCEEECCCeecCCcCCceEEEEEeCCCCC-CCCCCeEEEEEEEccCCCCcEEEEEEEEE
Confidence 457899999999998875 567899999999998 4999999999986 346789999999876 4578999999999
Q ss_pred eeCCCCccceeecccccccccCCceeeccCccccccceeecccc--cccCcccCCeEEEEEeeeeec
Q 015430 108 LDQSGKERHKVHSHFGRTLESGPYTLKYRGSMWGYKRFFKRTLL--EQSDYLKGDCLSVHCSVGVVK 172 (407)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~wG~~~f~~~~~L--~~~~~l~dd~l~i~~~v~i~~ 172 (407)
+|+++....... ....+.|. ....|||.+|+++++| +.++||.||+++|+|+|.|+.
T Consensus 80 ~n~~~~~~~~~~-------~~~~~~f~-~~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~ 138 (139)
T cd03774 80 LNAKGEETKAME-------SQRAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 138 (139)
T ss_pred EecCCCeeeeec-------ccCcEeCC-CCCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence 999876432111 11124454 3568999999999999 457899999999999999874
No 7
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.89 E-value=2.3e-22 Score=167.90 Aligned_cols=131 Identities=28% Similarity=0.425 Sum_probs=103.0
Q ss_pred eEEEEEEcCcccccc-CCCCC--ceecCce--eecCeEEEEEEeCCCCCCCCCCCeEEEEEEeecC------CceeEEEE
Q 015430 35 GSHQFKITGYSLSKG-LGIGK--YIASDTF--MVGGYAWAIYFYPDGKSVEDNAAYVSLFIALASE------GTDVRALF 103 (407)
Q Consensus 35 ~~~~w~I~nfs~~~~-~~~g~--~~~S~~F--~~gg~~W~l~~yp~g~~~~~~~~~lsl~L~~~~~------~w~v~a~~ 103 (407)
|.+.|+|++|+.+++ ++.|+ .+.|++| .++||+|+|++||||.. .+.++|||+||.+..+ .|++.+++
T Consensus 1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~-~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~ 79 (148)
T cd03780 1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDG-SGKGTHLSLYFVVMRGEFDSLLQWPFRQRV 79 (148)
T ss_pred CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCC-CCCCCEEEEEEEEecCccccccCcceEEEE
Confidence 579999999998864 57777 8999999 89999999999999987 3467899999999886 59999999
Q ss_pred EEEEeeCCCCccceeecccccccccCCceeecc----Cccccccceeeccccccc--CcccCCeEEEEEeee
Q 015430 104 ELTLLDQSGKERHKVHSHFGRTLESGPYTLKYR----GSMWGYKRFFKRTLLEQS--DYLKGDCLSVHCSVG 169 (407)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~----~~~wG~~~f~~~~~L~~~--~~l~dd~l~i~~~v~ 169 (407)
+|.|+||++.+.+.... +... .....|... +..||+++|+++++|+.+ +|+.||++.|+|.|.
T Consensus 80 tfsLlDq~~~~~~~~~~-~~~~--~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v~ 148 (148)
T cd03780 80 TLMLLDQSGKKNHIMET-FKAD--PNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAVD 148 (148)
T ss_pred EEEEECCCCCCCCccee-eecC--CccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEEC
Confidence 99999998654421111 1000 001334211 446999999999999864 999999999999873
No 8
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.88 E-value=3.6e-22 Score=166.41 Aligned_cols=126 Identities=13% Similarity=0.270 Sum_probs=101.9
Q ss_pred eeEEEEEEcCccccccCCCCCceecCceeecCeEEEEEEeCCCCCCC-CCCCeEEEEEEeec----CCceeEEEEEEEEe
Q 015430 34 NGSHQFKITGYSLSKGLGIGKYIASDTFMVGGYAWAIYFYPDGKSVE-DNAAYVSLFIALAS----EGTDVRALFELTLL 108 (407)
Q Consensus 34 ~~~~~w~I~nfs~~~~~~~g~~~~S~~F~~gg~~W~l~~yp~g~~~~-~~~~~lsl~L~~~~----~~w~v~a~~~~~l~ 108 (407)
.++|.|+|.|||.+ ++.+.|+.|.+||++|+|.+||+|.... +..+|+|+||.|.+ ..|++.|+|+|+|+
T Consensus 2 ~~~~~~~I~~~S~l-----~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~~~~~w~i~a~~~~~l~ 76 (137)
T cd03772 2 EATFSFTVERFSRL-----SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAESDSTSWSCHAQAVLRII 76 (137)
T ss_pred CcEEEEEECCcccC-----CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcCCCCCCeEEEEEEEEEE
Confidence 57899999999998 3679999999999999999999996521 24589999999965 24899999999999
Q ss_pred eCCCCccceeecccccccccCCceeeccCccccccceeeccccc--ccCcccCCeEEEEEeeeeec
Q 015430 109 DQSGKERHKVHSHFGRTLESGPYTLKYRGSMWGYKRFFKRTLLE--QSDYLKGDCLSVHCSVGVVK 172 (407)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~wG~~~f~~~~~L~--~~~~l~dd~l~i~~~v~i~~ 172 (407)
|+++....... ...+.|......|||++|++|++|. .++||.||+++|+|+|.|..
T Consensus 77 ~~~~~~~~~~~--------~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~ 134 (137)
T cd03772 77 NYKDDEPSFSR--------RISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA 134 (137)
T ss_pred cCCCCcccEEE--------eeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence 99853321110 0124565566789999999999993 68999999999999998764
No 9
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.88 E-value=6.7e-22 Score=170.96 Aligned_cols=134 Identities=26% Similarity=0.399 Sum_probs=104.6
Q ss_pred eeeEEEEEEcCccccc-cCCCCC--ceecCceeec--CeEEEEEEeCCCCCCCCCCCeEEEEEEeecC------CceeEE
Q 015430 33 VNGSHQFKITGYSLSK-GLGIGK--YIASDTFMVG--GYAWAIYFYPDGKSVEDNAAYVSLFIALASE------GTDVRA 101 (407)
Q Consensus 33 ~~~~~~w~I~nfs~~~-~~~~g~--~~~S~~F~~g--g~~W~l~~yp~g~~~~~~~~~lsl~L~~~~~------~w~v~a 101 (407)
..|+|.|+|.||+..+ +.+.|+ .+.|++|.+| ||+|+|++||||... +.++|||+||.+.++ .|++.+
T Consensus 37 ~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~-~~~~~iSvyl~L~~ge~D~~L~WP~~~ 115 (186)
T cd03777 37 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGM-GKGTHLSLFFVIMRGEYDALLPWPFKQ 115 (186)
T ss_pred cceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCC-CCCCEEEEEEEEecCCcccccCCceeE
Confidence 4699999999999876 456666 8999999999 999999999999873 468899999999875 599999
Q ss_pred EEEEEEeeCCCCccceeecccccccccCCceee-cc---CccccccceeecccccccCcccCCeEEEEEeeee
Q 015430 102 LFELTLLDQSGKERHKVHSHFGRTLESGPYTLK-YR---GSMWGYKRFFKRTLLEQSDYLKGDCLSVHCSVGV 170 (407)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~---~~~wG~~~f~~~~~L~~~~~l~dd~l~i~~~v~i 170 (407)
+++|.|+||++...+. ...+.+.-. ...|. +. +..||+++|+++++|+..+|++||++.|+|.|..
T Consensus 116 ~~tfsLlDQ~~~~~~~-~~~~~p~p~--~~~F~rp~~~~n~~~G~~~Fi~~~~Le~~~ylkdD~l~Irv~v~~ 185 (186)
T cd03777 116 KVTLMLMDQGSSRRHL-GDAFKPDPN--SSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDT 185 (186)
T ss_pred EEEEEEEcCCCccccc-cceeccCCc--cccccCCccCCCCCCCchheeEHHHhccCCcEeCCEEEEEEEEec
Confidence 9999999997632221 111111000 02232 22 4579999999999999899999999999998863
No 10
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.87 E-value=1e-21 Score=166.54 Aligned_cols=132 Identities=22% Similarity=0.331 Sum_probs=102.1
Q ss_pred eEEEEEEcCccccccC---CCCCceecCceeec--CeEEEEEEeCCCCCCCCCCCeEEEEEEeecC------CceeEEEE
Q 015430 35 GSHQFKITGYSLSKGL---GIGKYIASDTFMVG--GYAWAIYFYPDGKSVEDNAAYVSLFIALASE------GTDVRALF 103 (407)
Q Consensus 35 ~~~~w~I~nfs~~~~~---~~g~~~~S~~F~~g--g~~W~l~~yp~g~~~~~~~~~lsl~L~~~~~------~w~v~a~~ 103 (407)
|.|.|+|.+||.+++. +.|..+.|+.|.+| ||.|+|++||||... +..+|||+||.+.++ .|++.+++
T Consensus 1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~-~~~~~vs~~l~l~~ge~d~~l~wp~~a~~ 79 (154)
T cd03781 1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGS-GEGSHLSVYIRVLPGEYDNLLEWPFSHRI 79 (154)
T ss_pred CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCC-CCCCEEEEEEEEecCCcccccCCceeeEE
Confidence 5799999999988763 25689999999999 999999999999873 467899999999874 69999999
Q ss_pred EEEEeeCCCCc--c-ceeecccccccccCCceee--------ccCccccccceeecccccccCcccCCeEEEEEeee
Q 015430 104 ELTLLDQSGKE--R-HKVHSHFGRTLESGPYTLK--------YRGSMWGYKRFFKRTLLEQSDYLKGDCLSVHCSVG 169 (407)
Q Consensus 104 ~~~l~~~~~~~--~-~~~~~~~~~~~~~~~~~f~--------~~~~~wG~~~f~~~~~L~~~~~l~dd~l~i~~~v~ 169 (407)
+|+|+|+.+.. . ......+... .....|. ..+..||+.+|+++++|+..+||.||+++|+|+|+
T Consensus 80 ~~~llDq~~~~~~~~~~~~~~~~~~--~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~Irc~v~ 154 (154)
T cd03781 80 TFTLLDQSDPSLSKPQHITETFTPD--PTWKNFQKPSASRLDESTLGFGYPKFISHEDLKKRNYIKDDAIFLRASVE 154 (154)
T ss_pred EEEEECCCCCccccCcceEEEEEcC--CchhhhcCCcccccCCCCCccchhHeeEHHHHhhCCcccCCEEEEEEEeC
Confidence 99999998641 1 1110111000 0112232 23457999999999999989999999999999884
No 11
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.87 E-value=8.4e-22 Score=166.10 Aligned_cols=131 Identities=24% Similarity=0.307 Sum_probs=100.2
Q ss_pred eEEEEEEcCccccc-cCCCCCc--eecCceee--cCeEEEEEEeCCCCCCCCCCCeEEEEEEeecC------CceeEEEE
Q 015430 35 GSHQFKITGYSLSK-GLGIGKY--IASDTFMV--GGYAWAIYFYPDGKSVEDNAAYVSLFIALASE------GTDVRALF 103 (407)
Q Consensus 35 ~~~~w~I~nfs~~~-~~~~g~~--~~S~~F~~--gg~~W~l~~yp~g~~~~~~~~~lsl~L~~~~~------~w~v~a~~ 103 (407)
|+|.|+|+|||.++ .++.|+. +.|+.|.+ |||+|+|++||||... +..+|||+||.+.++ .|++.++|
T Consensus 1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~-~~~~~lS~~L~l~~~~~d~~l~wpv~a~~ 79 (147)
T cd03776 1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEA-RCPNYISLFVHLMQGENDSHLDWPFQGTI 79 (147)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCC-CCCCEEEEEEEEeccCCCcccCCccccee
Confidence 58999999999754 4677775 88999985 7999999999999873 467899999999763 38999999
Q ss_pred EEEEeeCCCCccceeecccccccccCCceee-----ccCccccccceeecccccccCcccCCeEEEEEeee
Q 015430 104 ELTLLDQSGKERHKVHSHFGRTLESGPYTLK-----YRGSMWGYKRFFKRTLLEQSDYLKGDCLSVHCSVG 169 (407)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~-----~~~~~wG~~~f~~~~~L~~~~~l~dd~l~i~~~v~ 169 (407)
+|.|+|+.+...+.... +... .....|. ..+..|||.+|+++++|+..+||.||+++|+|+|.
T Consensus 80 ~~~lldq~~~~~~~~~~-~~~~--~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 80 TLTLLDQSEPRQNIHET-MMSK--PELLAFQRPTTDRNPKGFGYVEFAHIEDLLQRGFVKNDTLLIKIEVN 147 (147)
T ss_pred EEEEECCCcccCccEEE-EEcC--CChHhhcCCCcCCCCCCeeEceeeEHHHhhhCCCccCCEEEEEEEEC
Confidence 99999998643321100 0000 0012232 12457999999999999888999999999999984
No 12
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.87 E-value=1.6e-21 Score=161.92 Aligned_cols=130 Identities=25% Similarity=0.390 Sum_probs=99.4
Q ss_pred eEEEEEEcCccccc-cCCCC--CceecCceeec--CeEEEEEEeCCCCCCCCCCCeEEEEEEeecC------CceeEEEE
Q 015430 35 GSHQFKITGYSLSK-GLGIG--KYIASDTFMVG--GYAWAIYFYPDGKSVEDNAAYVSLFIALASE------GTDVRALF 103 (407)
Q Consensus 35 ~~~~w~I~nfs~~~-~~~~g--~~~~S~~F~~g--g~~W~l~~yp~g~~~~~~~~~lsl~L~~~~~------~w~v~a~~ 103 (407)
|.+.|+|.||++.. +...| ..++||+|..+ ||.|+|++||||... +.++|||+||.+.++ .|++.+++
T Consensus 1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~-~~~~~iSv~l~l~~g~~D~~l~wpv~~~~ 79 (147)
T cd03779 1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGA-GKGTHISLFFVIMKGEYDALLPWPFRHKV 79 (147)
T ss_pred CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCC-CCCCEEEEEEEEecCCcccccCcceEEEE
Confidence 57999999998544 43333 37999999875 999999999999873 468899999999874 59999999
Q ss_pred EEEEeeCCCCccceeecccccccccCCceee----ccCccccccceeeccccccc--CcccCCeEEEEEeee
Q 015430 104 ELTLLDQSGKERHKVHSHFGRTLESGPYTLK----YRGSMWGYKRFFKRTLLEQS--DYLKGDCLSVHCSVG 169 (407)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~----~~~~~wG~~~f~~~~~L~~~--~~l~dd~l~i~~~v~ 169 (407)
+|.|+||.+.+... . .+.... ....|. ..+..||+++|+++++|+.+ +||.||+++|+|+|.
T Consensus 80 tfsLlDq~~~~~~~-~-~~~~~~--~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V~ 147 (147)
T cd03779 80 TFMLLDQNNREHVI-D-AFRPDL--SSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVVD 147 (147)
T ss_pred EEEEECCCCCCCCc-E-eecCCc--ccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEEC
Confidence 99999998644321 1 111100 013343 33457999999999999875 999999999999884
No 13
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.86 E-value=1.8e-21 Score=164.79 Aligned_cols=132 Identities=27% Similarity=0.410 Sum_probs=100.4
Q ss_pred eEEEEEEcCcccccc---CCCCCceecCceeec--CeEEEEEEeCCCCCCCCCCCeEEEEEEeecC------CceeEEEE
Q 015430 35 GSHQFKITGYSLSKG---LGIGKYIASDTFMVG--GYAWAIYFYPDGKSVEDNAAYVSLFIALASE------GTDVRALF 103 (407)
Q Consensus 35 ~~~~w~I~nfs~~~~---~~~g~~~~S~~F~~g--g~~W~l~~yp~g~~~~~~~~~lsl~L~~~~~------~w~v~a~~ 103 (407)
|+|.|+|++||.+++ .+.++.++|+.|.+| |+.|+|.+||+|... +..+|||+||++.++ .|++.++|
T Consensus 1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~-~~~~~lsl~L~l~~~~~d~~~~w~~~~~~ 79 (149)
T cd00270 1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGT-GKGTHLSLFVHVMKGEYDALLEWPFRGKI 79 (149)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCC-CCCCEEEEEEEEeccCCCccccCCccceE
Confidence 589999999998875 246789999999999 999999999999863 356899999998653 49999999
Q ss_pred EEEEeeCCCCccce-eecccccccccCCceee-----ccCccccccceeecccccccCcccCCeEEEEEeee
Q 015430 104 ELTLLDQSGKERHK-VHSHFGRTLESGPYTLK-----YRGSMWGYKRFFKRTLLEQSDYLKGDCLSVHCSVG 169 (407)
Q Consensus 104 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~f~-----~~~~~wG~~~f~~~~~L~~~~~l~dd~l~i~~~v~ 169 (407)
+|.|+|+.+....+ ....+.... ....|. .+..+|||.+|+++++|+..+||.||+++|+|+|.
T Consensus 80 ~~~l~d~~~~~~~~~~~~~~~~~~--~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~~gfl~dD~l~I~~~v~ 149 (149)
T cd00270 80 TLTLLDQSDDSKRKHITETFMPDP--NSSAFQRPPTGENNIGFGYPEFVPLEKLESRGYVKDDTLFIKVEVD 149 (149)
T ss_pred EEEEECCCCccccCceEEEEEcCC--chHhhcCCCcccCCCCcCcceEeEHHHhccCCCEeCCEEEEEEEEC
Confidence 99999998741111 000100000 011232 24568999999999999878999999999999983
No 14
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.86 E-value=4.4e-21 Score=159.12 Aligned_cols=118 Identities=25% Similarity=0.456 Sum_probs=96.6
Q ss_pred EEEEEEcCccccccCCCCCceecCceeecCeEEEEEEeCCCCCCCCCCCeEEEEEEeec---------CCceeEEEEEEE
Q 015430 36 SHQFKITGYSLSKGLGIGKYIASDTFMVGGYAWAIYFYPDGKSVEDNAAYVSLFIALAS---------EGTDVRALFELT 106 (407)
Q Consensus 36 ~~~w~I~nfs~~~~~~~g~~~~S~~F~~gg~~W~l~~yp~g~~~~~~~~~lsl~L~~~~---------~~w~v~a~~~~~ 106 (407)
+|.|+|+|||.+ ++.+.|++|.+||++|+|.+||+|+. ..+|||+||.+.+ .+|.+.|+|+|.
T Consensus 2 ~f~w~I~~fS~~-----~~~~~S~~F~vGG~~W~l~~yP~G~~---~~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~ 73 (134)
T cd03775 2 SFTWRIKNWSEL-----EKKVHSPKFKCGGFEWRILLFPQGNS---QTGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALV 73 (134)
T ss_pred cEEEEECCcccC-----CcceeCCCEEECCeeEEEEEeCCCCC---CCCeEEEEEEecCcccccccCCCCCeEEEEEEEE
Confidence 589999999995 36799999999999999999999976 2789999999853 258899999999
Q ss_pred EeeCCCCccceeecccccccccCCceeeccCccccccceeeccccc------ccCcccCCeEEEEEeee
Q 015430 107 LLDQSGKERHKVHSHFGRTLESGPYTLKYRGSMWGYKRFFKRTLLE------QSDYLKGDCLSVHCSVG 169 (407)
Q Consensus 107 l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~wG~~~f~~~~~L~------~~~~l~dd~l~i~~~v~ 169 (407)
|+|+.+....... ...+.|.....+|||.+|+++++|+ +.|||.||+++|++.|.
T Consensus 74 l~n~~~~~~~~~~--------~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~ 134 (134)
T cd03775 74 ISNPGDPSIQLSN--------VAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR 134 (134)
T ss_pred EEcCCCCccceEc--------cceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence 9999643321111 1236676666789999999999996 47999999999999873
No 15
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.86 E-value=3e-21 Score=159.96 Aligned_cols=124 Identities=27% Similarity=0.525 Sum_probs=99.4
Q ss_pred eeEEEEEEcCccccccCCCCCceecCceeecCeEEEEEEeCCCCCCCCCCCeEEEEEEeecC-CceeEEEEEEEEeeCCC
Q 015430 34 NGSHQFKITGYSLSKGLGIGKYIASDTFMVGGYAWAIYFYPDGKSVEDNAAYVSLFIALASE-GTDVRALFELTLLDQSG 112 (407)
Q Consensus 34 ~~~~~w~I~nfs~~~~~~~g~~~~S~~F~~gg~~W~l~~yp~g~~~~~~~~~lsl~L~~~~~-~w~v~a~~~~~l~~~~~ 112 (407)
..++.|+|+|||.+++ .|+.+.|+.|.+||++|+|.+||+|.. ++.++|||+||.+.+. .|.+.++|+|+|+|+.+
T Consensus 4 ~~~~~~~I~~fS~~~~--~~~~~~S~~F~vgG~~W~i~~yP~G~~-~~~~~~lSl~L~l~~~~~~~~~~~~~l~llnq~~ 80 (132)
T cd03773 4 YDSATFTLENFSTLRQ--SADPVYSDPLNVDGLCWRLKVYPDGNG-EVRGNFLSVFLELCSGLGEASKYEYRVEMVHQAN 80 (132)
T ss_pred CcccEEEECChhhhhc--CCcceeCCCeEeCCccEEEEEECCCCC-CCCCCEEEEEEEeecCCCCceeEEEEEEEEcCCC
Confidence 4679999999998864 568899999999999999999999986 3357899999998764 57888999999999953
Q ss_pred CccceeecccccccccCCceeeccCccccccceeecccccccCcccC--CeEEEEEeee
Q 015430 113 KERHKVHSHFGRTLESGPYTLKYRGSMWGYKRFFKRTLLEQSDYLKG--DCLSVHCSVG 169 (407)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~f~~~~~~wG~~~f~~~~~L~~~~~l~d--d~l~i~~~v~ 169 (407)
...... .. ..+.|. .+..|||.+|+++++|+++|||.| |+++|+|.|.
T Consensus 81 ~~~~~~-~~-------~~~~f~-~~~~wG~~~Fi~~~~L~~~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 81 PTKNIK-RE-------FASDFE-VGECWGYNRFFRLDLLINEGYLLPENDTLILRFSVR 130 (132)
T ss_pred CccceE-Ee-------cccccc-CCCCcCHHHhccHHHHhhCCCcCCCCCEEEEEEEEe
Confidence 222211 11 113343 246799999999999987899999 9999999984
No 16
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.85 E-value=1.3e-20 Score=159.25 Aligned_cols=134 Identities=25% Similarity=0.381 Sum_probs=100.6
Q ss_pred eeEEEEEEcCccccc-cCCCCCceecCce-eecCeEEEEEEeCCCCCCCCCCCeEEEEEEeecC------Cce-eEEEEE
Q 015430 34 NGSHQFKITGYSLSK-GLGIGKYIASDTF-MVGGYAWAIYFYPDGKSVEDNAAYVSLFIALASE------GTD-VRALFE 104 (407)
Q Consensus 34 ~~~~~w~I~nfs~~~-~~~~g~~~~S~~F-~~gg~~W~l~~yp~g~~~~~~~~~lsl~L~~~~~------~w~-v~a~~~ 104 (407)
+..|.|+|+|||.++ +++.|..+.|++| .+|||+|+|++||||... .++|||+||++.++ +|+ +.++++
T Consensus 1 cp~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~--~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t 78 (167)
T cd03771 1 CPEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTES--YPGYTGLYFHLCSGENDDVLEWPCPNRQAT 78 (167)
T ss_pred CCeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCC--CCCcceEEEEEecCCccccccCcceeEEEE
Confidence 467999999999885 6788899999999 899999999999999873 57899999999763 388 589999
Q ss_pred EEEeeCCCCccc--eeeccccccc--cc---------CCce----eec-------cCccccccceeecccccccCcccCC
Q 015430 105 LTLLDQSGKERH--KVHSHFGRTL--ES---------GPYT----LKY-------RGSMWGYKRFFKRTLLEQSDYLKGD 160 (407)
Q Consensus 105 ~~l~~~~~~~~~--~~~~~~~~~~--~~---------~~~~----f~~-------~~~~wG~~~f~~~~~L~~~~~l~dd 160 (407)
|+|+||...... .....|...- .+ .|.. ... ++.+|||++|++.++|+...||+||
T Consensus 79 ~~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~r~ylk~d 158 (167)
T cd03771 79 MTLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRRRDFLKGD 158 (167)
T ss_pred EEEECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhccCCCCcCC
Confidence 999999742211 1111111110 00 0100 111 3457999999999999888899999
Q ss_pred eEEEEEeee
Q 015430 161 CLSVHCSVG 169 (407)
Q Consensus 161 ~l~i~~~v~ 169 (407)
++.|+++++
T Consensus 159 tl~i~~~~~ 167 (167)
T cd03771 159 DLIILLDFE 167 (167)
T ss_pred EEEEEEEeC
Confidence 999998873
No 17
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.81 E-value=1e-19 Score=152.16 Aligned_cols=166 Identities=25% Similarity=0.367 Sum_probs=139.4
Q ss_pred CcHHHHHHHhHhcCCCcceEEEEc---CeEEEeehhhHhhcCHHHHHhhcCCCCCCCcceEEecCCCHHHHHHHHhhhhc
Q 015430 188 SNIGQHFGQLLESGKRTDVNFEVN---GETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIYW 264 (407)
Q Consensus 188 ~~~~~~l~~l~~~~~~sDv~i~v~---~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt 264 (407)
+.+..-...+++.++++|++|.++ ++.++|||.+||+||.+.+-.-.| .....+..++|+++++|..+++||||
T Consensus 51 SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~WkfaN~~---dekse~~~~dDad~Ea~~t~iRWIYT 127 (280)
T KOG4591|consen 51 SRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWKFANGG---DEKSEELDLDDADFEAFHTAIRWIYT 127 (280)
T ss_pred HHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhhhccCC---CcchhhhcccccCHHHHHHhheeeec
Confidence 456666678899999999999997 578999999999999987532221 23345678899999999999999999
Q ss_pred CCCCCchhhccCCcccchHHHHHHHHHHHhhcCchhHHHHHHHHHhhcCChhhHHHHHHHHHhcCchHHHHHHHHhccCc
Q 015430 265 DSLPDMEELTGMSSKWASTLMSQHLLAAADRYGLERLRLLCEANLCEDVAINTVATTLALAEQHHCFQLKSVCLKFVAMP 344 (407)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~v~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~ 344 (407)
+.++.. .++..+.++.++|++|+++-|+..|++.+...++++||+.++++|+..++..|...|...|+
T Consensus 128 DEidfk----------~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA-- 195 (280)
T KOG4591|consen 128 DEIDFK----------EDDEFLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYEFAEELNARQLMNVAAEIIA-- 195 (280)
T ss_pred cccccc----------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHhhHHHHHHHHHHHHH--
Confidence 998743 56788999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHhcchhhhHHHhhChHHHHHHHH
Q 015430 345 ENLRAVMQTDGFEYLKESCPSLLTELLE 372 (407)
Q Consensus 345 ~~~~~l~~~~~f~~L~~~~p~l~~ell~ 372 (407)
.+|.++-+. +|.+ ..|.++..++.
T Consensus 196 ~~W~dL~~a-~Faq---Ms~aLLYklId 219 (280)
T KOG4591|consen 196 GAWDDLGKA-DFAQ---MSAALLYKLID 219 (280)
T ss_pred hhccccChH-HHHh---ccHHHHHHHHc
Confidence 888776543 3544 44667766654
No 18
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.81 E-value=4.7e-19 Score=166.81 Aligned_cols=176 Identities=25% Similarity=0.379 Sum_probs=155.5
Q ss_pred cccCCCCcHHHHHHHhHhcCCCcceEEEEcC-----eEEEeehhhHhhcCHHHHHhhcCCCCCCCcceEEecCCCHHHHH
Q 015430 182 SIAIPPSNIGQHFGQLLESGKRTDVNFEVNG-----ETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFK 256 (407)
Q Consensus 182 ~~~~~~~~~~~~l~~l~~~~~~sDv~i~v~~-----~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~ 256 (407)
....+.+++......+++++..+|+.|+|++ +.|+|||.+||..|.+|.+||++++.+....+|.++|+.+.+|.
T Consensus 93 nwq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl 172 (521)
T KOG2075|consen 93 NWQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFL 172 (521)
T ss_pred ccccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhH
Confidence 3445566777888889999999999999974 68999999999999999999999999998889999999999999
Q ss_pred HHHhhhhcCCCCCchhhccCCcccchHHHHHHHHHHHhhcCchhHHHHHHHHHhhcCChhhHHHHHHH-HHhcCchHHHH
Q 015430 257 ALLHFIYWDSLPDMEELTGMSSKWASTLMSQHLLAAADRYGLERLRLLCEANLCEDVAINTVATTLAL-AEQHHCFQLKS 335 (407)
Q Consensus 257 ~~L~~iYt~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~v~~L~~~c~~~l~~~l~~~n~~~~l~~-A~~~~~~~L~~ 335 (407)
.+|+|||++.+. +..++++.+|.+|++|.++.|.+.|.++|...+...|.+..|-- |..++-+.|..
T Consensus 173 ~~L~flYsdev~------------~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~ 240 (521)
T KOG2075|consen 173 AFLRFLYSDEVK------------LAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLIS 240 (521)
T ss_pred HHHHHHhcchhh------------hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHH
Confidence 999999999887 78899999999999999999999999999988877776666555 99999999999
Q ss_pred HHHHhccCcccHHHHhcchhhhHHHhhChHHHHHHHH
Q 015430 336 VCLKFVAMPENLRAVMQTDGFEYLKESCPSLLTELLE 372 (407)
Q Consensus 336 ~~~~~i~~~~~~~~l~~~~~f~~L~~~~p~l~~ell~ 372 (407)
.|++-|. .+++..+..++|.++... -+...++|+
T Consensus 241 ~c~e~id--~~~~~al~~EGf~did~~-~dt~~evl~ 274 (521)
T KOG2075|consen 241 ICLEVID--KSFEDALTPEGFCDIDST-RDTYEEVLR 274 (521)
T ss_pred HHHHHhh--hHHHhhhCccceeehhhH-HHHHHHHHh
Confidence 9999999 999999999999988643 344555554
No 19
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.80 E-value=1.9e-19 Score=144.43 Aligned_cols=107 Identities=33% Similarity=0.538 Sum_probs=95.0
Q ss_pred HHHhHhcCCCcceEEEEc-CeEEEeehhhHhhcCHHHHHhhcCC-CCCCCcceEEecCCCHHHHHHHHhhhhcCCCCCch
Q 015430 194 FGQLLESGKRTDVNFEVN-GETFAAHKLVLAARSPVFRAQLYGP-MKDQNTQCIKVEDMEAPVFKALLHFIYWDSLPDME 271 (407)
Q Consensus 194 l~~l~~~~~~sDv~i~v~-~~~~~~Hk~iLa~~S~~F~~~f~~~-~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~ 271 (407)
|+++++++.++|++|.++ +++|+|||.+|+++|+||+.||.++ +.+....+|.++++++++|..+|+|+|++.+.
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~--- 77 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIE--- 77 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEE---
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCccc---
Confidence 467888999999999999 8999999999999999999999887 56666678999999999999999999999987
Q ss_pred hhccCCcccch-HHHHHHHHHHHhhcCchhHHHHHHHHHhhc
Q 015430 272 ELTGMSSKWAS-TLMSQHLLAAADRYGLERLRLLCEANLCED 312 (407)
Q Consensus 272 ~~~~~~~~~~~-~~~~~~ll~~A~~~~v~~L~~~c~~~l~~~ 312 (407)
+. .+++.+++.+|++|+++.|+..|+++|.+.
T Consensus 78 ---------~~~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 78 ---------INSDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp ---------EE-TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred ---------CCHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 55 788999999999999999999999999753
No 20
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.80 E-value=1.4e-18 Score=142.20 Aligned_cols=120 Identities=36% Similarity=0.622 Sum_probs=96.6
Q ss_pred eEEEEEEcCccccccCCCCCceecCceeecCeEEEEEEeCCCCCCCCCCCeEEEEEEeecC-----CceeEEEEEEEEee
Q 015430 35 GSHQFKITGYSLSKGLGIGKYIASDTFMVGGYAWAIYFYPDGKSVEDNAAYVSLFIALASE-----GTDVRALFELTLLD 109 (407)
Q Consensus 35 ~~~~w~I~nfs~~~~~~~g~~~~S~~F~~gg~~W~l~~yp~g~~~~~~~~~lsl~L~~~~~-----~w~v~a~~~~~l~~ 109 (407)
++|+|+|.+|+. ..++.+.|+.|.++|+.|+|.+||+|... +.+|+|+||.|... .|.+.++|+|.|++
T Consensus 1 ~~~~~~i~~~~~----~~~~~~~S~~f~~~g~~W~l~~~p~~~~~--~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~ 74 (126)
T cd00121 1 GKHTWKIVNFSE----LEGESIYSPPFEVGGYKWRIRIYPNGDGE--SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVN 74 (126)
T ss_pred CEEEEEECCCCC----CCCcEEECCCEEEcCEeEEEEEEcCCCCC--CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEEC
Confidence 479999999988 34688999999999999999999998763 57899999999764 39999999999999
Q ss_pred CCCCccceeecccccccccCCcee-eccCccccccceeecccccccCcccCCeEEEEEeee
Q 015430 110 QSGKERHKVHSHFGRTLESGPYTL-KYRGSMWGYKRFFKRTLLEQSDYLKGDCLSVHCSVG 169 (407)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~f-~~~~~~wG~~~f~~~~~L~~~~~l~dd~l~i~~~v~ 169 (407)
+++.+...... ...| .....+|||.+|++|++|.+..++.||+++|+|+|.
T Consensus 75 ~~~~~~~~~~~---------~~~~~~~~~~~~G~~~fi~~~~l~~~~~~~~d~l~i~~~v~ 126 (126)
T cd00121 75 QNGGKSLSKSF---------THVFFSEKGSGWGFPKFISWDDLEDSYYLVDDSLTIEVEVK 126 (126)
T ss_pred CCCCccceEec---------cCCcCCCCCCCCChHHeeEHHHhccCCcEECCEEEEEEEEC
Confidence 98433322111 1122 234678999999999999866568999999999983
No 21
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.78 E-value=2.2e-18 Score=144.56 Aligned_cols=135 Identities=21% Similarity=0.314 Sum_probs=99.2
Q ss_pred eeeeEEEEEEcCccccccC-CC--CCceecCceee--cCeEEEEEEeCCCCCCCCCCCeEEEEEEeecC------CceeE
Q 015430 32 TVNGSHQFKITGYSLSKGL-GI--GKYIASDTFMV--GGYAWAIYFYPDGKSVEDNAAYVSLFIALASE------GTDVR 100 (407)
Q Consensus 32 ~~~~~~~w~I~nfs~~~~~-~~--g~~~~S~~F~~--gg~~W~l~~yp~g~~~~~~~~~lsl~L~~~~~------~w~v~ 100 (407)
...|.|.|+|.||+.+.+. .. ...++||+|.. +||+|+|++||||++ .+.+.|||+|+++.++ .|++.
T Consensus 16 ~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g-~~~g~~LSly~~l~~Ge~D~~L~WPf~ 94 (164)
T cd03778 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLRWPFN 94 (164)
T ss_pred ccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCC-CCCCCEEEEEEEEecCCcCcccCCcee
Confidence 3469999999999976543 22 34799999975 489999999999987 3467799999999874 39999
Q ss_pred EEEEEEEeeCCCCccceeecccccccccCCc-e-eeccCccccccceeecccccc-cCcccCCeEEEEEeee
Q 015430 101 ALFELTLLDQSGKERHKVHSHFGRTLESGPY-T-LKYRGSMWGYKRFFKRTLLEQ-SDYLKGDCLSVHCSVG 169 (407)
Q Consensus 101 a~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~-f~~~~~~wG~~~f~~~~~L~~-~~~l~dd~l~i~~~v~ 169 (407)
.+++|.|+||++... +...+.+..+...+ + .+..+..|||+.|++.++|.. .+|++||++.|+|.|.
T Consensus 95 ~~itl~llDQ~~r~h--i~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~~~Yv~dDtlfIk~~Vd 164 (164)
T cd03778 95 QKVTLMLLDQNNREH--VIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAKNSYVRDDAIFIKAIVD 164 (164)
T ss_pred eEEEEEEECCCCCCc--ceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHccccCCcccCCeEEEEEEEC
Confidence 999999999975322 11111111110000 1 123345699999999999965 7999999999999873
No 22
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.73 E-value=2.5e-17 Score=133.73 Aligned_cols=113 Identities=29% Similarity=0.539 Sum_probs=90.4
Q ss_pred EcCccccccCCCCCceecCceeecCeEEEEEEeCCCCCCCCCCCeEEEEEEeecC------CceeEEEEEEEEeeCCCCc
Q 015430 41 ITGYSLSKGLGIGKYIASDTFMVGGYAWAIYFYPDGKSVEDNAAYVSLFIALASE------GTDVRALFELTLLDQSGKE 114 (407)
Q Consensus 41 I~nfs~~~~~~~g~~~~S~~F~~gg~~W~l~~yp~g~~~~~~~~~lsl~L~~~~~------~w~v~a~~~~~l~~~~~~~ 114 (407)
|.|||.++ ..+....|+.|.++|++|+|.+||+|+ ++++++||.|... .|++.+++++.++++++..
T Consensus 1 i~nfs~l~--~~~~~~~s~~~~~~g~~W~l~~~~~~~-----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 73 (119)
T PF00917_consen 1 IKNFSKLK--EGEEYSSSFVFSHGGYPWRLKVYPKGN-----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKS 73 (119)
T ss_dssp ETTGGGHH--TSEEEEEEEESSTTSEEEEEEEETTES-----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCE
T ss_pred CcccceEe--CCCcEECCCeEEECCEEEEEEEEeCCC-----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCc
Confidence 78999987 223445568999999999999999975 5789999999864 6999999999999998876
Q ss_pred cceeecccccccccCCceeeccCccccccceeecccccccCcccCCeEEEEEeeee
Q 015430 115 RHKVHSHFGRTLESGPYTLKYRGSMWGYKRFFKRTLLEQSDYLKGDCLSVHCSVGV 170 (407)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~f~~~~~~wG~~~f~~~~~L~~~~~l~dd~l~i~~~v~i 170 (407)
..+... .+.|. ...+|||.+|++|++|.+..|+.||.++|+|+|.|
T Consensus 74 ~~~~~~---------~~~F~-~~~~~g~~~fi~~~~l~~~~fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 74 ISKRIK---------SHSFN-NPSSWGWSSFISWEDLEDPYFLVDDSLTIEVEVKI 119 (119)
T ss_dssp EEEEEE---------CEEEC-TTSEEEEEEEEEHHHHTTCTTSBTTEEEEEEEEEE
T ss_pred ceeeee---------eeEEe-eecccchhheeEHHHhCccCCeECCEEEEEEEEEC
Confidence 322111 24554 34789999999999998666899999999999976
No 23
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.72 E-value=4.3e-17 Score=150.20 Aligned_cols=151 Identities=21% Similarity=0.295 Sum_probs=140.8
Q ss_pred HHHhHhcCCCcceEEEEcCeEEEeehhhHhhcCHHHHHhhcCCCCCCCcceEEec----CCCHHHHHHHHhhhhcCCCCC
Q 015430 194 FGQLLESGKRTDVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVE----DMEAPVFKALLHFIYWDSLPD 269 (407)
Q Consensus 194 l~~l~~~~~~sDv~i~v~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~----~~~~~~f~~~L~~iYt~~~~~ 269 (407)
+..++.+++.+||++.+-|++.++||..|. +|+||.+||.|-++|++.+.|.++ .|+..+|..++.-+|.+++.
T Consensus 60 yq~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEve- 137 (488)
T KOG4682|consen 60 YQNLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVE- 137 (488)
T ss_pred HHHHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhee-
Confidence 567888999999999999999999999998 999999999999999999877764 68999999999999999998
Q ss_pred chhhccCCcccchHHHHHHHHHHHhhcCchhHHHHHHHHHhhcCChhhHHHHHHHHHhcCchHHHHHHHHhccCcccHHH
Q 015430 270 MEELTGMSSKWASTLMSQHLLAAADRYGLERLRLLCEANLCEDVAINTVATTLALAEQHHCFQLKSVCLKFVAMPENLRA 349 (407)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~ll~~A~~~~v~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~ 349 (407)
+..+.+..+|++|..++++.|.+.|.+.+++.++++|++..+..|.+|+...+++.|++++. .|+..
T Consensus 138 -----------I~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~--~nl~~ 204 (488)
T KOG4682|consen 138 -----------IKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLL--NNLMT 204 (488)
T ss_pred -----------ccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHH--HhhHh
Confidence 88999999999999999999999999999999999999999999999999999999999999 99988
Q ss_pred HhcchhhhHH
Q 015430 350 VMQTDGFEYL 359 (407)
Q Consensus 350 l~~~~~f~~L 359 (407)
+....-+.++
T Consensus 205 i~~~q~l~ei 214 (488)
T KOG4682|consen 205 IQNVQLLKEI 214 (488)
T ss_pred hhhHHHHHhc
Confidence 8877744443
No 24
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.70 E-value=2.3e-17 Score=163.48 Aligned_cols=167 Identities=19% Similarity=0.317 Sum_probs=139.1
Q ss_pred CCCcceEEEE-cCeEEEeehhhHhhcCHHHHHhhcCCCCCCCcceEEecCCCHHHHHHHHhhhhcC-CCCCchhhccCCc
Q 015430 201 GKRTDVNFEV-NGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIYWD-SLPDMEELTGMSS 278 (407)
Q Consensus 201 ~~~sDv~i~v-~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~-~~~~~~~~~~~~~ 278 (407)
+..-|+.|.+ +|+.++|||++|++|++||..||..-|.|+..-.+.+-.+..+.+..+|+|+|+. .....++.
T Consensus 708 ~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~----- 782 (1267)
T KOG0783|consen 708 EETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDL----- 782 (1267)
T ss_pred ccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhcc-----
Confidence 3445777776 6777999999999999999999998888988877777777899999999999954 33222211
Q ss_pred ccchHHHHHHHHHHHhhcCchhHHHHHHHHHhhcCChhhHHHHHHHHHhcCchHHHHHHHHhccCcccHHHHhcchhhhH
Q 015430 279 KWASTLMSQHLLAAADRYGLERLRLLCEANLCEDVAINTVATTLALAEQHHCFQLKSVCLKFVAMPENLRAVMQTDGFEY 358 (407)
Q Consensus 279 ~~~~~~~~~~ll~~A~~~~v~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~l~~~~~f~~ 358 (407)
-..+++.++|.+||.|-+.+|+..||..|.+.++..++..+|++|.+|++..|+..|++||+ .|+..++......+
T Consensus 783 --~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic--~N~~~~Learsi~~ 858 (1267)
T KOG0783|consen 783 --KESDFMFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFIC--HNIEFFLEARSISE 858 (1267)
T ss_pred --chhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHH--HhHHHHHHhccHhh
Confidence 34567999999999999999999999999999999999999999999999999999999999 99999988777666
Q ss_pred HHhhChHHHHHHHHHHHh
Q 015430 359 LKESCPSLLTELLEYVAK 376 (407)
Q Consensus 359 L~~~~p~l~~ell~~~~~ 376 (407)
+...+..-+.+-+++|+.
T Consensus 859 ~dg~~LK~l~~~yrkm~~ 876 (1267)
T KOG0783|consen 859 WDGFHLKKLAQRYRKMLS 876 (1267)
T ss_pred hcchHHHHHHHHHHHHhh
Confidence 655544556666677766
No 25
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.68 E-value=1.9e-16 Score=121.25 Aligned_cols=90 Identities=39% Similarity=0.564 Sum_probs=84.0
Q ss_pred ceEEEEcCeEEEeehhhHhhcCHHHHHhhcCCCCCCCcceEEecCCCHHHHHHHHhhhhcCCCCCchhhccCCcccchHH
Q 015430 205 DVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIYWDSLPDMEELTGMSSKWASTL 284 (407)
Q Consensus 205 Dv~i~v~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~~~~~ 284 (407)
|++|.++|+.|+|||.+|+++|+||+.||.+++.+.....+.++++++++|+.+|+|+|++.+. +...
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~------------~~~~ 68 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLD------------LPEE 68 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceee------------cCHH
Confidence 7889999999999999999999999999998887777889999999999999999999999887 6667
Q ss_pred HHHHHHHHHhhcCchhHHHHHH
Q 015430 285 MSQHLLAAADRYGLERLRLLCE 306 (407)
Q Consensus 285 ~~~~ll~~A~~~~v~~L~~~c~ 306 (407)
++.+++.+|++|+++.|+..|+
T Consensus 69 ~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 69 NVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred HHHHHHHHHHHHCcHHHHhhhC
Confidence 8999999999999999999885
No 26
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=99.64 E-value=1.1e-15 Score=127.58 Aligned_cols=134 Identities=22% Similarity=0.370 Sum_probs=97.4
Q ss_pred eEEEEEEcCcccccc-CCCCCceecCceeec-CeEEEEEEeCCCCCCCCCCCeEEEEEEeecCC------cee-EEEEEE
Q 015430 35 GSHQFKITGYSLSKG-LGIGKYIASDTFMVG-GYAWAIYFYPDGKSVEDNAAYVSLFIALASEG------TDV-RALFEL 105 (407)
Q Consensus 35 ~~~~w~I~nfs~~~~-~~~g~~~~S~~F~~g-g~~W~l~~yp~g~~~~~~~~~lsl~L~~~~~~------w~v-~a~~~~ 105 (407)
..+.|+|.||+.+.+ ...+..++||.|... ||+.++++|+||+...+.+.|+|+|+++.+++ |++ .-+++|
T Consensus 2 p~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~itl 81 (167)
T cd03783 2 PNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAII 81 (167)
T ss_pred CceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEEE
Confidence 468999999987554 346678999999874 99999999999986434678999999998853 995 568999
Q ss_pred EEeeCCCCccce--eeccccccc--cc----------CCce--------eeccCccccccceeecccccccCcccCCeEE
Q 015430 106 TLLDQSGKERHK--VHSHFGRTL--ES----------GPYT--------LKYRGSMWGYKRFFKRTLLEQSDYLKGDCLS 163 (407)
Q Consensus 106 ~l~~~~~~~~~~--~~~~~~~~~--~~----------~~~~--------f~~~~~~wG~~~f~~~~~L~~~~~l~dd~l~ 163 (407)
.|+||+...... ....|.... .+ .|.. -..++.++||++|++.+.|+..+|++||++.
T Consensus 82 ~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~r~yikdDtlf 161 (167)
T cd03783 82 TVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRRRSFLKNDDLI 161 (167)
T ss_pred EEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhhCCcccCCeEE
Confidence 999997522111 111111111 00 0100 0124568999999999999889999999999
Q ss_pred EEEee
Q 015430 164 VHCSV 168 (407)
Q Consensus 164 i~~~v 168 (407)
|.+++
T Consensus 162 I~~~~ 166 (167)
T cd03783 162 IFVDF 166 (167)
T ss_pred EEEec
Confidence 98876
No 27
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=99.61 E-value=5.8e-15 Score=122.53 Aligned_cols=132 Identities=21% Similarity=0.344 Sum_probs=98.1
Q ss_pred eEEEEEEcCcccccc-CCCCCceecCceee-cCeEEEEEEeCCCCCCCCCCCeEEEEEEeecCC------ceeE-EEEEE
Q 015430 35 GSHQFKITGYSLSKG-LGIGKYIASDTFMV-GGYAWAIYFYPDGKSVEDNAAYVSLFIALASEG------TDVR-ALFEL 105 (407)
Q Consensus 35 ~~~~w~I~nfs~~~~-~~~g~~~~S~~F~~-gg~~W~l~~yp~g~~~~~~~~~lsl~L~~~~~~------w~v~-a~~~~ 105 (407)
..|.|+|.||+++.+ .+.+..++||+|.. .||+.++++|+||+.. .++|||+|+++.+++ |++. -+++|
T Consensus 2 p~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~--~~~~lsl~~~lm~Ge~D~~L~WPf~~~qit~ 79 (167)
T cd03782 2 PEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDD--YPGNLAIYLHLTSGPNDDQLQWPCPWQQATM 79 (167)
T ss_pred CcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCC--CCCEEEEEEEEeccCCCccccCCCcCCeEEE
Confidence 568999999987554 35677899999964 6999999999999873 367999999998853 9999 89999
Q ss_pred EEeeCCCC---ccceeec-ccccccccC---Cce----------ee-------ccCccccccceeecccccccCcccCCe
Q 015430 106 TLLDQSGK---ERHKVHS-HFGRTLESG---PYT----------LK-------YRGSMWGYKRFFKRTLLEQSDYLKGDC 161 (407)
Q Consensus 106 ~l~~~~~~---~~~~~~~-~~~~~~~~~---~~~----------f~-------~~~~~wG~~~f~~~~~L~~~~~l~dd~ 161 (407)
.|+||+.+ ..+...+ .+.+...+. .+. .+ .++.++||+.|++.+.|+.+.|++||.
T Consensus 80 ~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~r~yikdD~ 159 (167)
T cd03782 80 MLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRSRDFIKGDD 159 (167)
T ss_pred EEEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHhhcCcccCCe
Confidence 99999752 1211110 122221111 110 11 135689999999999998899999999
Q ss_pred EEEEEee
Q 015430 162 LSVHCSV 168 (407)
Q Consensus 162 l~i~~~v 168 (407)
+.|-+++
T Consensus 160 ifi~~~~ 166 (167)
T cd03782 160 VIFLLTM 166 (167)
T ss_pred EEEEEec
Confidence 9988765
No 28
>smart00061 MATH meprin and TRAF homology.
Probab=99.50 E-value=1.2e-13 Score=107.12 Aligned_cols=89 Identities=22% Similarity=0.355 Sum_probs=71.9
Q ss_pred EEEEEcCccccccCCCCCceecCceeecCeEEEEEEeCCCCCCCCCCCeEEEEEEeecC-----CceeEEEEEEEEeeCC
Q 015430 37 HQFKITGYSLSKGLGIGKYIASDTFMVGGYAWAIYFYPDGKSVEDNAAYVSLFIALASE-----GTDVRALFELTLLDQS 111 (407)
Q Consensus 37 ~~w~I~nfs~~~~~~~g~~~~S~~F~~gg~~W~l~~yp~g~~~~~~~~~lsl~L~~~~~-----~w~v~a~~~~~l~~~~ 111 (407)
+.|+|.||+.+. .|+.+.|++|.++|++|+|.+||+ .+|+|+||.|.+. .|++.|+|++.|++++
T Consensus 2 ~~~~~~~~~~~~---~~~~~~S~~f~~~g~~W~i~~~p~-------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~ 71 (95)
T smart00061 2 LSHTFKNVSRLE---EGESYFSPSEEHFNIPWRLKIYRK-------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQN 71 (95)
T ss_pred ceeEEEchhhcc---cCceEeCChhEEcCceeEEEEEEc-------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCC
Confidence 579999998873 467899999999999999999999 4689999999653 5899999999999998
Q ss_pred CCccceeecccccccccCCceeeccCcccccccee
Q 015430 112 GKERHKVHSHFGRTLESGPYTLKYRGSMWGYKRFF 146 (407)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~wG~~~f~ 146 (407)
+....+. ..+.|.. ..+|||.+|+
T Consensus 72 ~~~~~~~----------~~~~F~~-~~~~G~~~fi 95 (95)
T smart00061 72 GKSLSKK----------DKHVFEK-PSGWGFSKFI 95 (95)
T ss_pred CCEEeee----------eeEEEcC-CCccceeeEC
Confidence 7644111 2355654 6789998875
No 29
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.47 E-value=9.1e-13 Score=124.55 Aligned_cols=234 Identities=27% Similarity=0.333 Sum_probs=175.4
Q ss_pred EEEcCccccccCCCCCceecCceeecCeEEEEEEeCCCCCCCCCCCeEEEEEEeecC-CceeEEEEEEEEeeCCCCcc-c
Q 015430 39 FKITGYSLSKGLGIGKYIASDTFMVGGYAWAIYFYPDGKSVEDNAAYVSLFIALASE-GTDVRALFELTLLDQSGKER-H 116 (407)
Q Consensus 39 w~I~nfs~~~~~~~g~~~~S~~F~~gg~~W~l~~yp~g~~~~~~~~~lsl~L~~~~~-~w~v~a~~~~~l~~~~~~~~-~ 116 (407)
|.|.+|+... ..++|..|..+|..|++.+||.|+ +++.|+..... +|.+.+.+.+.+.|+..... .
T Consensus 8 ~~~~~~~~~~-----l~~ys~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~v~n~~~~~~~~ 75 (297)
T KOG1987|consen 8 WVISNFSSVG-----LVIYSNGFVKGGCKWRLSAYPKGN-------YLSLTLSVSDSPGWERYAKLRLTVVNQKSEKYLS 75 (297)
T ss_pred eeeccCcchh-----hhccccceeecCceEEEEEecCCC-------EEEEEEEeccCCCcceeEEEEEEEccCCCcceee
Confidence 9999987665 568899999999999999999974 57887776554 79999999999999976543 1
Q ss_pred eeecccccccccCCceeecc--CccccccceeecccccccCcccCCeEEEEEeeeeeccccCCCccccccCCCCcHHHHH
Q 015430 117 KVHSHFGRTLESGPYTLKYR--GSMWGYKRFFKRTLLEQSDYLKGDCLSVHCSVGVVKSHTEGPKIYSIAIPPSNIGQHF 194 (407)
Q Consensus 117 ~~~~~~~~~~~~~~~~f~~~--~~~wG~~~f~~~~~L~~~~~l~dd~l~i~~~v~i~~~~~~~~~~~~~~~~~~~~~~~l 194 (407)
.... +...|..+ ...||+..+++...+. .|
T Consensus 76 ~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~------------~~---------------------------- 107 (297)
T KOG1987|consen 76 TVEE--------GFSWFRFNKVLKEWGFGKMLPLTLLI------------DC---------------------------- 107 (297)
T ss_pred eeee--------eEEeccccccccccCcccccChHHhh------------cc----------------------------
Confidence 1100 00111111 2345543332222111 00
Q ss_pred HHhHhcCCCcceEEEEcCeEEEeehhhHhhcCHHHHHhhcCCCCCCCcceEEecCCCHHHHHHHHhhhhcCCCCCchhhc
Q 015430 195 GQLLESGKRTDVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIYWDSLPDMEELT 274 (407)
Q Consensus 195 ~~l~~~~~~sDv~i~v~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~ 274 (407)
.+..+.+|+.++++++++|+.|+..+..+.....+.+.+..+..++++..|+|...-.
T Consensus 108 ----------------~~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~------ 165 (297)
T KOG1987|consen 108 ----------------SNGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQV------ 165 (297)
T ss_pred ----------------cCcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccch------
Confidence 0555999999999999999999987766666667788899999999999999997654
Q ss_pred cCCcccchHHHHH---HHHHHHhhcCchhHHHHHHHHHhhcCChhhHHHHHHHHHhcCchHHHHHHHHhccCcccHHHHh
Q 015430 275 GMSSKWASTLMSQ---HLLAAADRYGLERLRLLCEANLCEDVAINTVATTLALAEQHHCFQLKSVCLKFVAMPENLRAVM 351 (407)
Q Consensus 275 ~~~~~~~~~~~~~---~ll~~A~~~~v~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~l~ 351 (407)
....... .++..|.+++...|+..|...+...+...++...+..|..+++..+...|..++....++..+.
T Consensus 166 ------~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~ 239 (297)
T KOG1987|consen 166 ------SSVERIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLE 239 (297)
T ss_pred ------HHHHHhhcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHH
Confidence 2233333 7888999999999999999999999889999999999999999999999999999544777777
Q ss_pred cchhhhHHH
Q 015430 352 QTDGFEYLK 360 (407)
Q Consensus 352 ~~~~f~~L~ 360 (407)
...++....
T Consensus 240 ~~~~~~~~k 248 (297)
T KOG1987|consen 240 KKLNEVKEK 248 (297)
T ss_pred HHHHHHHHh
Confidence 655554443
No 30
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.7e-11 Score=121.39 Aligned_cols=124 Identities=22% Similarity=0.412 Sum_probs=99.8
Q ss_pred eeeeEEEEEEcCccccccCCCCCceecCceeecCeEEEEEEeCCCCCCCCCCCeEEEEEEeec--------CCceeEEEE
Q 015430 32 TVNGSHQFKITGYSLSKGLGIGKYIASDTFMVGGYAWAIYFYPDGKSVEDNAAYVSLFIALAS--------EGTDVRALF 103 (407)
Q Consensus 32 ~~~~~~~w~I~nfs~~~~~~~g~~~~S~~F~~gg~~W~l~~yp~g~~~~~~~~~lsl~L~~~~--------~~w~v~a~~ 103 (407)
...-++.|+|.+|+.+. +...||.|.+||+.|+|.++|+|++. .+ +|+||.... +.|.|+|+|
T Consensus 36 ~~~~sftW~vk~wsel~-----~k~~Sp~F~vg~~twki~lfPqG~nq---~~-~sVyLe~~pqe~e~~~gk~~~ccaqF 106 (1089)
T COG5077 36 LLEMSFTWKVKRWSELA-----KKVESPPFSVGGHTWKIILFPQGNNQ---CN-VSVYLEYEPQELEETGGKYYDCCAQF 106 (1089)
T ss_pred HhhcccceecCChhhhh-----hhccCCcccccCeeEEEEEecccCCc---cc-cEEEEEeccchhhhhcCcchhhhhhe
Confidence 34678999999999886 35789999999999999999999873 22 999998754 229999999
Q ss_pred EEEEeeCCCCccceeecccccccccCCceeeccCccccccceeeccccc-----ccCcccCCeEEEEEeeeeec
Q 015430 104 ELTLLDQSGKERHKVHSHFGRTLESGPYTLKYRGSMWGYKRFFKRTLLE-----QSDYLKGDCLSVHCSVGVVK 172 (407)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~wG~~~f~~~~~L~-----~~~~l~dd~l~i~~~v~i~~ 172 (407)
.|.|.+....... ..+...++|+....+|||.+|+....+. ...|+.+|.+.|.+.|.|.+
T Consensus 107 af~Is~p~~pti~--------~iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlk 172 (1089)
T COG5077 107 AFDISNPKYPTIE--------YINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLK 172 (1089)
T ss_pred eeecCCCCCCchh--------hhhcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEe
Confidence 9999987653221 1223447888888999999999888772 24589999999999999997
No 31
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.73 E-value=1.8e-08 Score=101.33 Aligned_cols=123 Identities=30% Similarity=0.402 Sum_probs=84.5
Q ss_pred CCCCcHHHHHHHhHhc----CCCcceEEEEcCeEEEeehhhHhhcCHHHHHhhcCCCCCCC------------cceEEec
Q 015430 185 IPPSNIGQHFGQLLES----GKRTDVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQN------------TQCIKVE 248 (407)
Q Consensus 185 ~~~~~~~~~l~~l~~~----~~~sDv~i~v~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~------------~~~i~l~ 248 (407)
++.+++...|..|+.. ..+.||+|.||++.|+|||.||++||++|+.+|....+.+. ...|.++
T Consensus 536 ~~ss~fe~sf~kLl~e~~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve 615 (1267)
T KOG0783|consen 536 AASSNFEGSFPKLLSEENYKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVE 615 (1267)
T ss_pred cccccchhhhHHHhhccccccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeec
Confidence 4566788888888865 34679999999999999999999999999999954322211 1245588
Q ss_pred CCCHHHHHHHHhhhhcCCCCCc---hhh-ccCCcc-----cchHHHHHHHHHHHhhcCchhHHHHHHH
Q 015430 249 DMEAPVFKALLHFIYWDSLPDM---EEL-TGMSSK-----WASTLMSQHLLAAADRYGLERLRLLCEA 307 (407)
Q Consensus 249 ~~~~~~f~~~L~~iYt~~~~~~---~~~-~~~~~~-----~~~~~~~~~ll~~A~~~~v~~L~~~c~~ 307 (407)
++.+..|+.+|+||||++.-.+ ++. +..++. .--......|..++.+|++..|......
T Consensus 616 ~i~p~mfe~lL~~iYtdt~~~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~~s 683 (1267)
T KOG0783|consen 616 DIPPLMFEILLHYIYTDTLLSPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFSVS 683 (1267)
T ss_pred cCCHHHHHHHHHHHhcccccCCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhhhh
Confidence 9999999999999999964322 110 000000 0011234457778888888777665544
No 32
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.66 E-value=5.9e-08 Score=89.69 Aligned_cols=132 Identities=16% Similarity=0.206 Sum_probs=110.3
Q ss_pred eEEEeehhhHhhcCHHHHHhhcCCCCCCCc-c---eEEecCCCHHHHHHHHhhhhcCCCCCchhhccCCcccchHHHHHH
Q 015430 213 ETFAAHKLVLAARSPVFRAQLYGPMKDQNT-Q---CIKVEDMEAPVFKALLHFIYWDSLPDMEELTGMSSKWASTLMSQH 288 (407)
Q Consensus 213 ~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~~-~---~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~~~~~~~~~ 288 (407)
.+++||+++++ |..||+.||.|++.|+.. . ...++.....+.+..++|+|+++.+ +..+.+.+
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~td------------i~~~~A~d 367 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTD------------IIFDVASD 367 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhccccc------------chHHHHhh
Confidence 46999999998 889999999999999542 2 3456677788999999999999987 77888999
Q ss_pred HHHHHhhcCch--h-HHHHHHHHHhhc---CChhhHHHHHHHHHhcCchHHHHHHHHhccCcccHHHHhcchhhhHH
Q 015430 289 LLAAADRYGLE--R-LRLLCEANLCED---VAINTVATTLALAEQHHCFQLKSVCLKFVAMPENLRAVMQTDGFEYL 359 (407)
Q Consensus 289 ll~~A~~~~v~--~-L~~~c~~~l~~~---l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~l~~~~~f~~L 359 (407)
++.+|+++.+. . |+..+...|.+. ++.-++..++.++.......|...+..|+. .|+..+...|++...
T Consensus 368 vll~ad~lal~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a--~hl~~l~~dPe~~~~ 442 (516)
T KOG0511|consen 368 VLLFADKLALADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEA--RHLLLLLPDPEGDSS 442 (516)
T ss_pred HHHHhhHhhhhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHhcCCchhhHH
Confidence 99999999765 2 566665555543 455679999999999999999999999999 999999999998875
No 33
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.33 E-value=7.9e-07 Score=78.90 Aligned_cols=133 Identities=23% Similarity=0.300 Sum_probs=89.1
Q ss_pred CcHHHHHHHhHhcCC-CcceEEEE-cC--------------eEEEeehhhHhhcCHHHHHhhcCCCCCCC---------c
Q 015430 188 SNIGQHFGQLLESGK-RTDVNFEV-NG--------------ETFAAHKLVLAARSPVFRAQLYGPMKDQN---------T 242 (407)
Q Consensus 188 ~~~~~~l~~l~~~~~-~sDv~i~v-~~--------------~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~---------~ 242 (407)
..+..+++.|++..- +.|+++.+ +| .+++||++|.++||++|+.++.....+.. .
T Consensus 220 kkLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~P 299 (401)
T KOG2838|consen 220 KKLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRP 299 (401)
T ss_pred hhhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCC
Confidence 456678888888654 45555554 32 36999999999999999999954332221 2
Q ss_pred ceEEecC-CCHHHHH-HHHhhhhcCCCCCchhh---------------c-cCCcccchHHHHHHHHHHHhhcCchhHHHH
Q 015430 243 QCIKVED-MEAPVFK-ALLHFIYWDSLPDMEEL---------------T-GMSSKWASTLMSQHLLAAADRYGLERLRLL 304 (407)
Q Consensus 243 ~~i~l~~-~~~~~f~-~~L~~iYt~~~~~~~~~---------------~-~~~~~~~~~~~~~~ll~~A~~~~v~~L~~~ 304 (407)
..|.+++ |-|.+|. .+|.++||+.++..-.. . ..-........+++|+.+|-.|++.-|.+.
T Consensus 300 kRIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa 379 (401)
T KOG2838|consen 300 KRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQA 379 (401)
T ss_pred ceeechhhhcchhhhhhhhhhheecccchhhcccCCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566654 4566665 78899999987532111 0 001113445677889999999999999999
Q ss_pred HHHHHhhcCChhhHHH
Q 015430 305 CEANLCEDVAINTVAT 320 (407)
Q Consensus 305 c~~~l~~~l~~~n~~~ 320 (407)
|+..+......++...
T Consensus 380 ~e~Vir~acaadlsn~ 395 (401)
T KOG2838|consen 380 CEDVIRKACAADLSNG 395 (401)
T ss_pred HHHHHHhhhhhhcccc
Confidence 9998876655554433
No 34
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.28 E-value=1.2e-06 Score=77.80 Aligned_cols=106 Identities=20% Similarity=0.246 Sum_probs=80.3
Q ss_pred CCCcHHHHHHHhHhcCCCcceEEEEcCeEEEeehhhHhhcCHHHHHhhcCCCCCCC--cceEEecCCCHHHHHHHHhhhh
Q 015430 186 PPSNIGQHFGQLLESGKRTDVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQN--TQCIKVEDMEAPVFKALLHFIY 263 (407)
Q Consensus 186 ~~~~~~~~l~~l~~~~~~sDv~i~v~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~--~~~i~l~~~~~~~f~~~L~~iY 263 (407)
|..++.++|...++.....|+-|+....-|+|||++|++|||+|+.+......-.. .-.+..-+++.++|+++|+|+|
T Consensus 113 ea~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~ 192 (401)
T KOG2838|consen 113 EANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLI 192 (401)
T ss_pred chhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHH
Confidence 44578899999988889999999999999999999999999999998855321111 1245566899999999999999
Q ss_pred cCCCCCchhhccCCcccchHHHHHHHHHHHhhcCchh
Q 015430 264 WDSLPDMEELTGMSSKWASTLMSQHLLAAADRYGLER 300 (407)
Q Consensus 264 t~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~v~~ 300 (407)
+|..-..+ ....++.-|-+++.-|+...
T Consensus 193 tgEfgmEd---------~~fqn~diL~QL~edFG~~k 220 (401)
T KOG2838|consen 193 TGEFGMED---------LGFQNSDILEQLCEDFGCFK 220 (401)
T ss_pred hcccchhh---------cCCchHHHHHHHHHhhCCch
Confidence 99875322 23345555666677776543
No 35
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=98.08 E-value=2.9e-05 Score=68.89 Aligned_cols=96 Identities=23% Similarity=0.347 Sum_probs=80.6
Q ss_pred eEEEEcCeEEEeehhhHhhcCHHHHHhhcCCCC--CCCcceEEecCCCHHHHHHHHhhhhcCCCCCchhhccCCcccchH
Q 015430 206 VNFEVNGETFAAHKLVLAARSPVFRAQLYGPMK--DQNTQCIKVEDMEAPVFKALLHFIYWDSLPDMEELTGMSSKWAST 283 (407)
Q Consensus 206 v~i~v~~~~~~~Hk~iLa~~S~~F~~~f~~~~~--e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~~~~ 283 (407)
|.+-|||..|..++.-|.-...+|++|+..+.. ...++.|-|+ -+|..|..+|.|+-.|..+.+ .+.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFID-RSpKHF~~ILNfmRdGdv~LP----------e~~ 75 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFID-RSPKHFDTILNFMRDGDVDLP----------ESE 75 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEec-CChhHHHHHHHhhhcccccCc----------cch
Confidence 457899999999999999999999999987653 2234557665 699999999999998877622 567
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHHHHhhc
Q 015430 284 LMSQHLLAAADRYGLERLRLLCEANLCED 312 (407)
Q Consensus 284 ~~~~~ll~~A~~~~v~~L~~~c~~~l~~~ 312 (407)
..+.+|+.=|.+|.++.|.+.|+..|...
T Consensus 76 kel~El~~EA~fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 76 KELKELLREAEFYLLDGLVELCQSAIARL 104 (230)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhhc
Confidence 88999999999999999999999988654
No 36
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.71 E-value=4.3e-05 Score=58.90 Aligned_cols=88 Identities=23% Similarity=0.385 Sum_probs=65.8
Q ss_pred eEEEEcCeEEEeehhhHh-hcCHHHHHhhcCC---CCCCCcceEEecCCCHHHHHHHHhhhhc-CCCCCchhhccCCccc
Q 015430 206 VNFEVNGETFAAHKLVLA-ARSPVFRAQLYGP---MKDQNTQCIKVEDMEAPVFKALLHFIYW-DSLPDMEELTGMSSKW 280 (407)
Q Consensus 206 v~i~v~~~~~~~Hk~iLa-~~S~~F~~~f~~~---~~e~~~~~i~l~~~~~~~f~~~L~~iYt-~~~~~~~~~~~~~~~~ 280 (407)
|.|.|||+.|.+-+..|. ....+|..|+.+. ........+-| |-++..|+.+|+|+.+ +.++..
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~---------- 69 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIP---------- 69 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB-------------
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCC----------
Confidence 678999999999999999 4567999999764 33445567766 4799999999999999 566521
Q ss_pred chHHHHHHHHHHHhhcCchhH-HHHH
Q 015430 281 ASTLMSQHLLAAADRYGLERL-RLLC 305 (407)
Q Consensus 281 ~~~~~~~~ll~~A~~~~v~~L-~~~c 305 (407)
.......+++-|+.|+++.| +..|
T Consensus 70 -~~~~~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 70 -DEICLEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp -TTS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred -CchhHHHHHHHHHHcCCCccccCCC
Confidence 23457889999999999998 6655
No 37
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.54 E-value=0.00065 Score=50.77 Aligned_cols=86 Identities=21% Similarity=0.287 Sum_probs=63.1
Q ss_pred eEEEE-cCeEEEeehhhHhhcCHHHHHhhcCCC--CCCCcceEEecCCCHHHHHHHHhhh-h----cCCCCCchhhccCC
Q 015430 206 VNFEV-NGETFAAHKLVLAARSPVFRAQLYGPM--KDQNTQCIKVEDMEAPVFKALLHFI-Y----WDSLPDMEELTGMS 277 (407)
Q Consensus 206 v~i~v-~~~~~~~Hk~iLa~~S~~F~~~f~~~~--~e~~~~~i~l~~~~~~~f~~~L~~i-Y----t~~~~~~~~~~~~~ 277 (407)
|.++. +|.+|-+.|. +|.-|+-.++||.|+. .+...+++.+.+++...++.+.+|+ | ++.-.+.++
T Consensus 19 VkLvS~Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPe----- 92 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPE----- 92 (112)
T ss_pred eEeecCCCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCC-----
Confidence 45555 4566666665 4568999999998765 5667789999999999999999998 3 333111111
Q ss_pred cccchHHHHHHHHHHHhhcCc
Q 015430 278 SKWASTLMSQHLLAAADRYGL 298 (407)
Q Consensus 278 ~~~~~~~~~~~ll~~A~~~~v 298 (407)
+++..+.+++||.+|+.+.+
T Consensus 93 -F~IppemaleLL~aAn~Lec 112 (112)
T KOG3473|consen 93 -FDIPPEMALELLMAANYLEC 112 (112)
T ss_pred -CCCCHHHHHHHHHHhhhhcC
Confidence 13889999999999998753
No 38
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.15 E-value=0.00048 Score=63.85 Aligned_cols=88 Identities=14% Similarity=0.200 Sum_probs=71.4
Q ss_pred eEEEeehhhHhhcCHHHHHhhcCCCC-CCCcceEEec-CCCHHHHHHHHhhhhcCCCCCchhhccCCcccchHHHHHHHH
Q 015430 213 ETFAAHKLVLAARSPVFRAQLYGPMK-DQNTQCIKVE-DMEAPVFKALLHFIYWDSLPDMEELTGMSSKWASTLMSQHLL 290 (407)
Q Consensus 213 ~~~~~Hk~iLa~~S~~F~~~f~~~~~-e~~~~~i~l~-~~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~~~~~~~~~ll 290 (407)
+.|.|.+.+|...=.||+..+..... .....+|+|. ..+..+|+=+++|+...... ++..++..||
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~------------l~~~NvvsIl 81 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPS------------LTPSNVVSIL 81 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCc------------CCcCcEEEeE
Confidence 57999999999999999999965211 1222345554 46889999999999995544 7889999999
Q ss_pred HHHhhcCchhHHHHHHHHHhhc
Q 015430 291 AAADRYGLERLRLLCEANLCED 312 (407)
Q Consensus 291 ~~A~~~~v~~L~~~c~~~l~~~ 312 (407)
.-|++++|+.|.+.|..|+.++
T Consensus 82 iSS~FL~M~~Lve~cl~y~~~~ 103 (317)
T PF11822_consen 82 ISSEFLQMESLVEECLQYCHDH 103 (317)
T ss_pred ehhhhhccHHHHHHHHHHHHHh
Confidence 9999999999999999998654
No 39
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.84 E-value=0.0071 Score=47.43 Aligned_cols=91 Identities=13% Similarity=0.137 Sum_probs=61.3
Q ss_pred eEEEE-cCeEEEeehhhHhhcCHHHHHhhcCCCCC-CCcceEEecCCCHHHHHHHHhhhhcCCCCCc-h-------hhcc
Q 015430 206 VNFEV-NGETFAAHKLVLAARSPVFRAQLYGPMKD-QNTQCIKVEDMEAPVFKALLHFIYWDSLPDM-E-------ELTG 275 (407)
Q Consensus 206 v~i~v-~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e-~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~-~-------~~~~ 275 (407)
++++. +|..|.+.+.+.. +|..++.|+.+...+ .....|++++++...++.+++|++.-.-... . .+..
T Consensus 4 v~L~S~Dg~~f~v~~~~a~-~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~ 82 (104)
T smart00512 4 IKLISSDGEVFEVEREVAR-QSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDA 82 (104)
T ss_pred EEEEeCCCCEEEecHHHHH-HHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHH
Confidence 45554 7889999999774 999999999653222 2225899999999999999999965332111 0 0000
Q ss_pred CCcccchHHHHHHHHHHHhhcCc
Q 015430 276 MSSKWASTLMSQHLLAAADRYGL 298 (407)
Q Consensus 276 ~~~~~~~~~~~~~ll~~A~~~~v 298 (407)
.+- .++.+.+.+|+.+|+++++
T Consensus 83 ~F~-~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 83 EFL-KIDQETLFELILAANYLDI 104 (104)
T ss_pred HHH-cCCHHHHHHHHHHHHhhCC
Confidence 000 1556678888888888764
No 40
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=96.72 E-value=0.0022 Score=50.03 Aligned_cols=50 Identities=32% Similarity=0.454 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCchHHHHHHHHhccCcccHHHHhcchhhhHHHhhChHHHHHHHH
Q 015430 318 VATTLALAEQHHCFQLKSVCLKFVAMPENLRAVMQTDGFEYLKESCPSLLTELLE 372 (407)
Q Consensus 318 ~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~l~~~~~f~~L~~~~p~l~~ell~ 372 (407)
|+.++.+|..|++..|.+.|.+||. .|+.++..+++|.+|+. +.+..+|.
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~--~nf~~v~~~~~f~~L~~---~~l~~iL~ 50 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIA--KNFNEVSKSDEFLELPF---DQLIEILS 50 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH--HTHHHHTTSHHHHCS-H---HHHHHHHH
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHH--HHHHHHccchhhhcCCH---HHHHHHHh
Confidence 6889999999999999999999999 99999999999988763 34444443
No 41
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=96.59 E-value=0.015 Score=40.78 Aligned_cols=56 Identities=13% Similarity=0.256 Sum_probs=44.5
Q ss_pred eEEEE-cCeEEEeehhhHhhcCHHHHHhhcCCCCCCCcceEEecCCCHHHHHHHHhhhhc
Q 015430 206 VNFEV-NGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIYW 264 (407)
Q Consensus 206 v~i~v-~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt 264 (407)
++|+. +|+.|.+.+.++. .|..++.|+.+...+.. .|+|++++...++.+++|++.
T Consensus 3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~--~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLGDEDE--PIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT--EEEETTS-HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhccccc--ccccCccCHHHHHHHHHHHHh
Confidence 45554 7889999999877 99999999965433332 799999999999999999963
No 42
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.0031 Score=69.54 Aligned_cols=164 Identities=14% Similarity=0.116 Sum_probs=109.2
Q ss_pred EEEEcCccccccCCCCCceecCceeecCeEEEEEEeCCCCCCCCCCCeEEEEEEeecC----CceeEEEEEEEEeeCCCC
Q 015430 38 QFKITGYSLSKGLGIGKYIASDTFMVGGYAWAIYFYPDGKSVEDNAAYVSLFIALASE----GTDVRALFELTLLDQSGK 113 (407)
Q Consensus 38 ~w~I~nfs~~~~~~~g~~~~S~~F~~gg~~W~l~~yp~g~~~~~~~~~lsl~L~~~~~----~w~v~a~~~~~l~~~~~~ 113 (407)
+|.+.+..... ....|+.|..|+.+|++.+.|+++. ...+++++.|... .|.+.+++.+.+.|..+.
T Consensus 30 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~ 100 (1093)
T KOG1863|consen 30 TIDGIDDKSLL-----YRALSSNFGAGATKWKILIAPKVNS----LQSTRKKLEVMPSQSLKSWSCGAQAVLRVKNTIDN 100 (1093)
T ss_pred cccCcCcchhh-----hHhcCccccccccceeeeeccccCc----ccceeEEeeeccCCCCcceEecchhhhccccCCCC
Confidence 36555544333 2356899999999999999999874 4559999999762 299999999999993322
Q ss_pred ccceeecccccccccCCceeeccCccccccceeecccc--cccCcccCCeEEEEEeeeeec-cccCCCccccccCCCCcH
Q 015430 114 ERHKVHSHFGRTLESGPYTLKYRGSMWGYKRFFKRTLL--EQSDYLKGDCLSVHCSVGVVK-SHTEGPKIYSIAIPPSNI 190 (407)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~f~~~~~~wG~~~f~~~~~L--~~~~~l~dd~l~i~~~v~i~~-~~~~~~~~~~~~~~~~~~ 190 (407)
.. .. .....+.|.....+||+.+|+.|+++ ...+|+.+|++.+++.|.+.. .....
T Consensus 101 ~~-~~-------~~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~------------- 159 (1093)
T KOG1863|consen 101 LP-DP-------EKAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSLMN------------- 159 (1093)
T ss_pred ch-hh-------hhhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCcccc-------------
Confidence 21 11 11133677777889999999999999 458899999999999998875 11100
Q ss_pred HHHHHHhHhcCCCcceEEEEcCeEEEeehhhHhhc-CHHHHHhhcC
Q 015430 191 GQHFGQLLESGKRTDVNFEVNGETFAAHKLVLAAR-SPVFRAQLYG 235 (407)
Q Consensus 191 ~~~l~~l~~~~~~sDv~i~v~~~~~~~Hk~iLa~~-S~~F~~~f~~ 235 (407)
..+. .......|-+.-.|-+.++...+-+-- =+.|+..+++
T Consensus 160 ~~d~----k~~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~ 201 (1093)
T KOG1863|consen 160 PYDS----KRLTGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYS 201 (1093)
T ss_pred hhhh----hhcCCCCccccCCCceeeehHHHHHHHccHHHHHHHhc
Confidence 0000 112233355555666777766655432 3566666654
No 43
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.013 Score=49.44 Aligned_cols=108 Identities=16% Similarity=0.120 Sum_probs=74.8
Q ss_pred cCeEEEeehhhHhhcCHHHHHhhcCCCCCCCcceEEecCCCHHHHHHHHhhhhcCCCCCc---h-----------hhccC
Q 015430 211 NGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIYWDSLPDM---E-----------ELTGM 276 (407)
Q Consensus 211 ~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~---~-----------~~~~~ 276 (407)
+|+.|.+-..++. .|..+.+++...--......|+|+.+....|..+|+|++.-.-+.. + .....
T Consensus 13 DG~~f~ve~~~a~-~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~ 91 (162)
T KOG1724|consen 13 DGEIFEVEEEVAR-QSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAE 91 (162)
T ss_pred CCceeehhHHHHH-HhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHH
Confidence 6788888887765 8888888884321122225799999999999999999987432210 0 00000
Q ss_pred CcccchHHHHHHHHHHHhhcCchhHHHHHHHHHhhcCChhhHHH
Q 015430 277 SSKWASTLMSQHLLAAADRYGLERLRLLCEANLCEDVAINTVAT 320 (407)
Q Consensus 277 ~~~~~~~~~~~~ll~~A~~~~v~~L~~~c~~~l~~~l~~~n~~~ 320 (407)
+- .++..++.+|+.+|++++++.|..+|++.+...+...+.-+
T Consensus 92 Fl-k~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeE 134 (162)
T KOG1724|consen 92 FL-KVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEE 134 (162)
T ss_pred HH-hcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHH
Confidence 00 24456889999999999999999999998876654443333
No 44
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=96.13 E-value=0.017 Score=50.39 Aligned_cols=94 Identities=19% Similarity=0.310 Sum_probs=72.4
Q ss_pred cceEEEEcCeEEEeehhhHhhcCH--HHHHhhcCC--CCCCCcceEEecCCCHHHHHHHHhhhhcCCCCCchhhccCCcc
Q 015430 204 TDVNFEVNGETFAAHKLVLAARSP--VFRAQLYGP--MKDQNTQCIKVEDMEAPVFKALLHFIYWDSLPDMEELTGMSSK 279 (407)
Q Consensus 204 sDv~i~v~~~~~~~Hk~iLa~~S~--~F~~~f~~~--~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~ 279 (407)
+-|.+-++|+.|..-+.-|..+-| .+.+||.+. +.+....-..+-|-++..|+-+|.|+-.|.++.
T Consensus 9 ~~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~---------- 78 (302)
T KOG1665|consen 9 SMVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPS---------- 78 (302)
T ss_pred hhheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceee----------
Confidence 456788899999887777776644 677888653 333333334455679999999999999999983
Q ss_pred cchHHHHHHHHHHHhhcCchhHHHHHHHH
Q 015430 280 WASTLMSQHLLAAADRYGLERLRLLCEAN 308 (407)
Q Consensus 280 ~~~~~~~~~ll~~A~~~~v~~L~~~c~~~ 308 (407)
.+.-.+..+|+.|++|++-.|++..+..
T Consensus 79 -~s~i~~lgvLeeArff~i~sL~~hle~~ 106 (302)
T KOG1665|consen 79 -LSDIDCLGVLEEARFFQILSLKDHLEDS 106 (302)
T ss_pred -cCCccHHHHHHHhhHHhhHhHHhHHhhh
Confidence 4455689999999999999999998883
No 45
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=96.12 E-value=0.02 Score=54.90 Aligned_cols=91 Identities=27% Similarity=0.430 Sum_probs=69.1
Q ss_pred eEEEEcCeEEEeehhhHhhcC--HHHHHhhcCCCCCCCcc--eEEecCCCHHHHHHHHhhhhcCCCCCchhhccCCcccc
Q 015430 206 VNFEVNGETFAAHKLVLAARS--PVFRAQLYGPMKDQNTQ--CIKVEDMEAPVFKALLHFIYWDSLPDMEELTGMSSKWA 281 (407)
Q Consensus 206 v~i~v~~~~~~~Hk~iLa~~S--~~F~~~f~~~~~e~~~~--~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~~ 281 (407)
|.|-|+|+.|...+.-|+... .+|.+++.+.+.-.... .|-| |-+|+.|..+|.|+-|++++.
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI-DRDPdlFaviLn~LRTg~L~~------------ 79 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI-DRDPDLFAVILNLLRTGDLDA------------ 79 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe-cCCchHHHHHHHHHhcCCCCC------------
Confidence 568899999999999998665 69999998876544332 2544 569999999999999999983
Q ss_pred hHHHHHHHHH-HHhhcCchhHHH---HHHHHH
Q 015430 282 STLMSQHLLA-AADRYGLERLRL---LCEANL 309 (407)
Q Consensus 282 ~~~~~~~ll~-~A~~~~v~~L~~---~c~~~l 309 (407)
.......+|. =|.+|++..|.+ +|+..+
T Consensus 80 ~g~~~~~llhdEA~fYGl~~llrrl~~~~~~F 111 (465)
T KOG2714|consen 80 SGVFPERLLHDEAMFYGLTPLLRRLTLCEELF 111 (465)
T ss_pred ccCchhhhhhhhhhhcCcHHHHHHhhcCcccc
Confidence 3333444454 899999999887 455543
No 46
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=95.98 E-value=0.0088 Score=56.18 Aligned_cols=101 Identities=22% Similarity=0.270 Sum_probs=70.4
Q ss_pred HHHHHhHhcCC---CcceEEEE-cCeEEEeehhhHhhcCHHHHHhhcCCCCCCCcceEEecCCCHHHHHHHHhhhhcCCC
Q 015430 192 QHFGQLLESGK---RTDVNFEV-NGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIYWDSL 267 (407)
Q Consensus 192 ~~l~~l~~~~~---~sDv~i~v-~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~ 267 (407)
.++..++.+.. ..|+++.. +|+.|-|||.+|++||.+|..-+..-+ ....+|+-..+-+.+|..+|+|+|-..-
T Consensus 135 ahi~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~--~~~heI~~~~v~~~~f~~flk~lyl~~n 212 (516)
T KOG0511|consen 135 AHIQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFY--VQGHEIEAHRVILSAFSPFLKQLYLNTN 212 (516)
T ss_pred hHHHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhc--cccCchhhhhhhHhhhhHHHHHHHHhhh
Confidence 34555555543 36888876 678899999999999998865553322 1234565566788999999999997733
Q ss_pred CCchhhccCCcccchHHHHHHHHHHHhhcCchhHHHHHH
Q 015430 268 PDMEELTGMSSKWASTLMSQHLLAAADRYGLERLRLLCE 306 (407)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~v~~L~~~c~ 306 (407)
. +-......|+.+..+|+++.|....+
T Consensus 213 a------------~~~~qynallsi~~kF~~e~l~~~~~ 239 (516)
T KOG0511|consen 213 A------------EWKDQYNALLSIEVKFSKEKLSLEIS 239 (516)
T ss_pred h------------hhhhHHHHHHhhhhhccHHHhHHHHh
Confidence 2 23344578899999998877765443
No 47
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=95.58 E-value=0.011 Score=45.66 Aligned_cols=41 Identities=24% Similarity=0.238 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCchHHHHHHHHhccCcccHHHHhcchhhhHHH
Q 015430 318 VATTLALAEQHHCFQLKSVCLKFVAMPENLRAVMQTDGFEYLK 360 (407)
Q Consensus 318 ~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~l~~~~~f~~L~ 360 (407)
|+.++.+|..|++..|.+.|.+||. .|+..+.++++|..|+
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~--~nf~~~~~~~~f~~L~ 41 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFIL--KNFLEVAQSEEFLELS 41 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHH--HHHHHHhcCcHHhcCC
Confidence 4568889999999999999999999 9999999998888775
No 48
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=94.60 E-value=0.023 Score=55.54 Aligned_cols=78 Identities=26% Similarity=0.374 Sum_probs=63.3
Q ss_pred eeeeEEEEEEcCccccccC---CCCCceecCceee--cCeEEEEEEeCCCCCCCCCCCeEEEEEEeecCC------ceeE
Q 015430 32 TVNGSHQFKITGYSLSKGL---GIGKYIASDTFMV--GGYAWAIYFYPDGKSVEDNAAYVSLFIALASEG------TDVR 100 (407)
Q Consensus 32 ~~~~~~~w~I~nfs~~~~~---~~g~~~~S~~F~~--gg~~W~l~~yp~g~~~~~~~~~lsl~L~~~~~~------w~v~ 100 (407)
...|+..|+|.+|...+.. ..+..+.|+.|.. .||..+.++|-||+. .+.+.++|+|+....+. |++.
T Consensus 277 ~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g-~~~~~~~s~~~~~~~ge~d~~l~wpf~ 355 (391)
T KOG0297|consen 277 SYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDG-TGKGTHLSLYFVVMRGEYDALLPWPFR 355 (391)
T ss_pred ccCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCC-CCCcceeeeeeeecccCcccccccCCC
Confidence 4579999999999544432 3456788999975 699999999999987 34677999999887643 9999
Q ss_pred EEEEEEEeeC
Q 015430 101 ALFELTLLDQ 110 (407)
Q Consensus 101 a~~~~~l~~~ 110 (407)
-++++.++++
T Consensus 356 ~~v~~~l~dq 365 (391)
T KOG0297|consen 356 QKVTLMLLDQ 365 (391)
T ss_pred CceEEEEecc
Confidence 9999999999
No 49
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=94.56 E-value=0.014 Score=54.90 Aligned_cols=145 Identities=21% Similarity=0.221 Sum_probs=115.2
Q ss_pred ceEEEEcCeEEEeehhhHhhcCHHHHHhhcCCCCCCCcceEEecCCCHHHHHHHHhhhhcCCCCCchhhccCCcccchHH
Q 015430 205 DVNFEVNGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIYWDSLPDMEELTGMSSKWASTL 284 (407)
Q Consensus 205 Dv~i~v~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~~~~~ 284 (407)
|.++......+++|+.+|+..|+.|..+....-..+....+.+..++...+..+.+++|.. +... ....
T Consensus 28 ~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~----------e~~~ 96 (319)
T KOG1778|consen 28 VEIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKH----------EMVF 96 (319)
T ss_pred hhhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc-hhhh----------HHHH
Confidence 4444556778999999999999999888765522233456777788899999999999988 3311 2345
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHhh-cCChhhHHHHHHHHHhcCchHHHHHHHHhccCcccHHHHhcchhhhHHHhh
Q 015430 285 MSQHLLAAADRYGLERLRLLCEANLCE-DVAINTVATTLALAEQHHCFQLKSVCLKFVAMPENLRAVMQTDGFEYLKES 362 (407)
Q Consensus 285 ~~~~ll~~A~~~~v~~L~~~c~~~l~~-~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~l~~~~~f~~L~~~ 362 (407)
....++.+...|.++.++..|...+.. .++..++...+..+..+....|...+...+. ..+....+++.+..+...
T Consensus 97 ~~ihll~~~~~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~--~~~~~H~~t~~~~~~~c~ 173 (319)
T KOG1778|consen 97 FDIHLLALSHVYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIM--LLFDLHLQTEKWFAYTCP 173 (319)
T ss_pred HHHHHHhhhhhhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHH--HHHHHHhcccCceeeecC
Confidence 678888888999999999999988865 5688899999999999999999999999999 888888887777665433
No 50
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=92.65 E-value=1.2 Score=35.52 Aligned_cols=110 Identities=16% Similarity=0.131 Sum_probs=71.6
Q ss_pred ceEEEE-cCeEEEeehhhHhhcCHHHHHhhcCCCCCCCcceEEecCCCHHHHHHHHhhhhcCCCCCchhhc-------cC
Q 015430 205 DVNFEV-NGETFAAHKLVLAARSPVFRAQLYGPMKDQNTQCIKVEDMEAPVFKALLHFIYWDSLPDMEELT-------GM 276 (407)
Q Consensus 205 Dv~i~v-~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~-------~~ 276 (407)
-+.++. +|+.|.+.+. .|.+|-..+.|+... .+. .-.+.++.+...+|..+++|+-..+-....+.+ .+
T Consensus 3 ~i~l~s~dge~F~vd~~-iAerSiLikN~l~d~-~~~-n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p 79 (158)
T COG5201 3 MIELESIDGEIFRVDEN-IAERSILIKNMLCDS-TAC-NYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKP 79 (158)
T ss_pred ceEEEecCCcEEEehHH-HHHHHHHHHHHhccc-ccc-CCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCC
Confidence 455554 5677777665 466888888877321 111 223677889999999999999654322111111 01
Q ss_pred Ccc------cchHHHHHHHHHHHhhcCchhHHHHHHHHHhhcCChhh
Q 015430 277 SSK------WASTLMSQHLLAAADRYGLERLRLLCEANLCEDVAINT 317 (407)
Q Consensus 277 ~~~------~~~~~~~~~ll~~A~~~~v~~L~~~c~~~l~~~l~~~n 317 (407)
... .++.+++.++..+|+++.++.|.+.|+..+...+...+
T Consensus 80 ~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemirgkS 126 (158)
T COG5201 80 SDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRGKS 126 (158)
T ss_pred ccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHccCC
Confidence 111 24456788899999999999999999998876554443
No 51
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=91.57 E-value=0.39 Score=35.35 Aligned_cols=48 Identities=15% Similarity=0.150 Sum_probs=32.9
Q ss_pred chHHHHHHHHHHHhhcCchhHHHHHHHHHhhcCChh---hHHHHHHHHHhc
Q 015430 281 ASTLMSQHLLAAADRYGLERLRLLCEANLCEDVAIN---TVATTLALAEQH 328 (407)
Q Consensus 281 ~~~~~~~~ll~~A~~~~v~~L~~~c~~~l~~~l~~~---n~~~~l~~A~~~ 328 (407)
++...+.+|+.+|++++++.|...|...+...+... -+..++.+...+
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~ 61 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDL 61 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TS
T ss_pred cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCC
Confidence 456789999999999999999999999987655443 344444444433
No 52
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=90.19 E-value=1.5 Score=36.83 Aligned_cols=97 Identities=19% Similarity=0.219 Sum_probs=71.0
Q ss_pred cceEEEEcCeEEEeehhhHhhcCHHH-HHhhcCCC---CCCCcceEEecCCCHHHHHHHHhhhhcCCCCCchhhccCCcc
Q 015430 204 TDVNFEVNGETFAAHKLVLAARSPVF-RAQLYGPM---KDQNTQCIKVEDMEAPVFKALLHFIYWDSLPDMEELTGMSSK 279 (407)
Q Consensus 204 sDv~i~v~~~~~~~Hk~iLa~~S~~F-~~~f~~~~---~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~ 279 (407)
.=|.+-|||..|-.-|.-|..-+.-| ..+....+ ......---+-|-+|.-|.-+|.|+-+|.+.
T Consensus 21 ~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklv----------- 89 (210)
T KOG2715|consen 21 LWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLV----------- 89 (210)
T ss_pred EEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhh-----------
Confidence 34667789999999999999887444 44444332 1122222344467899999999999999986
Q ss_pred cchHHHHHHHHHHHhhcCchhHHHHHHHHHhhc
Q 015430 280 WASTLMSQHLLAAADRYGLERLRLLCEANLCED 312 (407)
Q Consensus 280 ~~~~~~~~~ll~~A~~~~v~~L~~~c~~~l~~~ 312 (407)
++.-.-..+|.-|+.|.++.|..+..+.|...
T Consensus 90 -l~~l~eeGvL~EAefyn~~~li~likd~i~dR 121 (210)
T KOG2715|consen 90 -LNKLSEEGVLEEAEFYNDPSLIQLIKDRIQDR 121 (210)
T ss_pred -hhhhhhhccchhhhccCChHHHHHHHHHHHHH
Confidence 44444467889999999999999988888654
No 53
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=88.67 E-value=0.86 Score=44.68 Aligned_cols=58 Identities=33% Similarity=0.444 Sum_probs=45.5
Q ss_pred CChhhHHHHHHHHHhcCchHHHHHHHHhccCcccHHHHhcchhhhHHHh-----hChHHHHHHHHHHH
Q 015430 313 VAINTVATTLALAEQHHCFQLKSVCLKFVAMPENLRAVMQTDGFEYLKE-----SCPSLLTELLEYVA 375 (407)
Q Consensus 313 l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~l~~~~~f~~L~~-----~~p~l~~ell~~~~ 375 (407)
+..+|++.++..|.+|....|+..|++||. ..++...+|..|.+ ..|+|+..+++.+.
T Consensus 185 ~~~dtvi~tl~~AkKY~VpaLer~CVkflr-----~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id 247 (521)
T KOG2075|consen 185 LAADTVITTLYAAKKYLVPALERQCVKFLR-----KNLMADNAFLELFQRAKLFDEPSLISICLEVID 247 (521)
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHH-----HhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhh
Confidence 578999999999999999999999999999 34555566777665 35777766665544
No 54
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=70.56 E-value=14 Score=32.96 Aligned_cols=96 Identities=13% Similarity=0.156 Sum_probs=59.7
Q ss_pred CCcceE-EEEcCeEEEeehh-hHhhcCHHHHHhhcCCCC--CCCcceEEecCCCHHHHHHHHhhhhcCCCCCchhhccCC
Q 015430 202 KRTDVN-FEVNGETFAAHKL-VLAARSPVFRAQLYGPMK--DQNTQCIKVEDMEAPVFKALLHFIYWDSLPDMEELTGMS 277 (407)
Q Consensus 202 ~~sDv~-i~v~~~~~~~Hk~-iLa~~S~~F~~~f~~~~~--e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~~ 277 (407)
...|++ +-|+|.-|..-.. +++-.-.....||.+... ........|+ -+-..|+.+|.|+-+..+..+
T Consensus 6 ~~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fID-RDG~lFRyvL~~LRt~~l~lp------- 77 (221)
T KOG2723|consen 6 EYPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFID-RDGFLFRYVLDYLRTKALLLP------- 77 (221)
T ss_pred ccCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEEc-CCcchHHHHHHHhcccccccc-------
Confidence 455655 4456655443333 233344566777765321 1223345554 577899999999999443311
Q ss_pred cccchHHHHHHHHHHHhhcCchhHHHHHHHH
Q 015430 278 SKWASTLMSQHLLAAADRYGLERLRLLCEAN 308 (407)
Q Consensus 278 ~~~~~~~~~~~ll~~A~~~~v~~L~~~c~~~ 308 (407)
....++..|+..|+.|+++.+..++.+.
T Consensus 78 ---e~f~e~~~L~rEA~f~~l~~~~~~l~~~ 105 (221)
T KOG2723|consen 78 ---EDFAEVERLVREAEFFQLEAPVTYLLNS 105 (221)
T ss_pred ---hhhhhHHHHHHHHHHHccccHHHHHhcc
Confidence 3346789999999999999887766554
No 55
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=61.99 E-value=13 Score=34.58 Aligned_cols=85 Identities=15% Similarity=0.192 Sum_probs=56.5
Q ss_pred CcceEEEEcCeEEEeehhhHhhcC-HHHHHhhcCCCCCC---CcceEEe-cCCCHHHHHHHHhhhhcCCCCCchhhccCC
Q 015430 203 RTDVNFEVNGETFAAHKLVLAARS-PVFRAQLYGPMKDQ---NTQCIKV-EDMEAPVFKALLHFIYWDSLPDMEELTGMS 277 (407)
Q Consensus 203 ~sDv~i~v~~~~~~~Hk~iLa~~S-~~F~~~f~~~~~e~---~~~~i~l-~~~~~~~f~~~L~~iYt~~~~~~~~~~~~~ 277 (407)
.--++..+++..|-+.+.+|.++- .-.-.||.+++.-. ...+.++ ++++...|+++|+|.-+|.+.-+
T Consensus 95 ~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP------- 167 (438)
T KOG3840|consen 95 GDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCP------- 167 (438)
T ss_pred CcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCC-------
Confidence 345778889999999999887553 24456665543221 2235665 46999999999999999987522
Q ss_pred cccchHHHHHHHHHHHhhcCc
Q 015430 278 SKWASTLMSQHLLAAADRYGL 298 (407)
Q Consensus 278 ~~~~~~~~~~~ll~~A~~~~v 298 (407)
+.-.+-+|-+++|++.+
T Consensus 168 ----~~vSvpELrEACDYLli 184 (438)
T KOG3840|consen 168 ----SSVSVSELREACDYLLV 184 (438)
T ss_pred ----CCCchHHHHhhcceEEe
Confidence 22235566666666654
No 56
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=59.75 E-value=24 Score=26.77 Aligned_cols=59 Identities=17% Similarity=0.304 Sum_probs=38.1
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHhhcC------------ChhhHHHHHHHHHh--cCchHHHHHHHHhccCcccH
Q 015430 287 QHLLAAADRYGLERLRLLCEANLCEDV------------AINTVATTLALAEQ--HHCFQLKSVCLKFVAMPENL 347 (407)
Q Consensus 287 ~~ll~~A~~~~v~~L~~~c~~~l~~~l------------~~~n~~~~l~~A~~--~~~~~L~~~~~~~i~~~~~~ 347 (407)
.+++.+|+.|++..|...|.+++..+. +.+.+..++.--.. .+-..+.+.++.++. .+.
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~--~~~ 74 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLK--HNP 74 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHH--CTH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHH--hCH
Confidence 578999999999999999999987542 22333333332111 233467788888887 554
No 57
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=56.40 E-value=11 Score=29.15 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=26.8
Q ss_pred ChhhHHHHHHHHHhcCchHHHHHHHHhcc
Q 015430 314 AINTVATTLALAEQHHCFQLKSVCLKFVA 342 (407)
Q Consensus 314 ~~~n~~~~l~~A~~~~~~~L~~~~~~~i~ 342 (407)
+.+++..++.+|..++.+.|...|..++.
T Consensus 80 ~~~~~~~ll~lA~~~~~~~L~~~~~~~l~ 108 (111)
T PF00651_consen 80 SDENVEELLELADKLQIPELKKACEKFLQ 108 (111)
T ss_dssp -TTTHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 37889999999999999999999999987
No 58
>PHA03098 kelch-like protein; Provisional
Probab=52.54 E-value=24 Score=36.11 Aligned_cols=30 Identities=20% Similarity=0.367 Sum_probs=28.7
Q ss_pred CChhhHHHHHHHHHhcCchHHHHHHHHhcc
Q 015430 313 VAINTVATTLALAEQHHCFQLKSVCLKFVA 342 (407)
Q Consensus 313 l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~ 342 (407)
++.+|+.+++..|+.+..+.|+..|.+|+.
T Consensus 73 i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~ 102 (534)
T PHA03098 73 ITSNNVKDILSIANYLIIDFLINLCINYII 102 (534)
T ss_pred EcHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 678999999999999999999999999998
No 59
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=51.96 E-value=5.5 Score=37.45 Aligned_cols=41 Identities=15% Similarity=0.308 Sum_probs=37.3
Q ss_pred cCChhhHHHHHHHHHhcCchHHHHHHHHhccCcccHHHHhcch
Q 015430 312 DVAINTVATTLALAEQHHCFQLKSVCLKFVAMPENLRAVMQTD 354 (407)
Q Consensus 312 ~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~l~~~~ 354 (407)
.+++.|++.+|.-++-...+.|.+.|+.|+. .|+.+++.++
T Consensus 71 ~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~--~~~~~Iv~~~ 111 (317)
T PF11822_consen 71 SLTPSNVVSILISSEFLQMESLVEECLQYCH--DHMSEIVASP 111 (317)
T ss_pred cCCcCcEEEeEehhhhhccHHHHHHHHHHHH--HhHHHHHcCC
Confidence 4789999999999999999999999999999 8888887654
No 60
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=33.45 E-value=36 Score=33.09 Aligned_cols=32 Identities=28% Similarity=0.343 Sum_probs=28.8
Q ss_pred chHHHHHHHHHHHhhcCchhHHHHHHHHHhhc
Q 015430 281 ASTLMSQHLLAAADRYGLERLRLLCEANLCED 312 (407)
Q Consensus 281 ~~~~~~~~ll~~A~~~~v~~L~~~c~~~l~~~ 312 (407)
++..++...+++|.+|+++.++..|.++|...
T Consensus 170 lspkta~~yYea~ckYgle~vk~kc~ewl~~n 201 (488)
T KOG4682|consen 170 LSPKTACGYYEAACKYGLESVKKKCLEWLLNN 201 (488)
T ss_pred cChhhhhHhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 56788999999999999999999999998643
No 61
>PHA02713 hypothetical protein; Provisional
Probab=31.97 E-value=66 Score=33.26 Aligned_cols=31 Identities=16% Similarity=0.198 Sum_probs=29.3
Q ss_pred cCChhhHHHHHHHHHhcCchHHHHHHHHhcc
Q 015430 312 DVAINTVATTLALAEQHHCFQLKSVCLKFVA 342 (407)
Q Consensus 312 ~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~ 342 (407)
.++.+|+.++|..|+.+..+.|++.|.+|+.
T Consensus 90 ~i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~ 120 (557)
T PHA02713 90 HISSMNVIDVLKCADYLLIDDLVTDCESYIK 120 (557)
T ss_pred CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 3788999999999999999999999999998
No 62
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=29.85 E-value=59 Score=24.16 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=22.0
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHhhc
Q 015430 287 QHLLAAADRYGLERLRLLCEANLCED 312 (407)
Q Consensus 287 ~~ll~~A~~~~v~~L~~~c~~~l~~~ 312 (407)
.+++.+|+.|+.+.|...|.+++..+
T Consensus 2 ~~i~~~a~~~~~~~L~~~~~~~i~~n 27 (101)
T smart00875 2 LGIRRFAELYGLEELLEKALRFILKN 27 (101)
T ss_pred HhHHHHHHHhChHHHHHHHHHHHHHH
Confidence 35778899999999999999998654
No 63
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=28.51 E-value=2.2e+02 Score=21.90 Aligned_cols=55 Identities=16% Similarity=0.260 Sum_probs=37.9
Q ss_pred ceEEEEcC--eEEEeehhhHhhcCHHHHHhhcCC---CCCCCcceEEecCCCHHHHHHHHhhh
Q 015430 205 DVNFEVNG--ETFAAHKLVLAARSPVFRAQLYGP---MKDQNTQCIKVEDMEAPVFKALLHFI 262 (407)
Q Consensus 205 Dv~i~v~~--~~~~~Hk~iLa~~S~~F~~~f~~~---~~e~~~~~i~l~~~~~~~f~~~L~~i 262 (407)
-+.+.||+ +.|-++...|. .|.|+.++... +.-.....|.|+ .+...|+.+|..|
T Consensus 40 ~~~VyVG~~~~Rfvvp~~~L~--hp~f~~LL~~aeeEfG~~~~G~l~iP-C~~~~Fe~~l~~l 99 (100)
T PF02519_consen 40 HFAVYVGEERRRFVVPVSYLN--HPLFQELLEQAEEEFGFDQDGPLTIP-CDVVLFEHLLWLL 99 (100)
T ss_pred eEEEEeCccceEEEechHHcC--chhHHHHHHHHhhhcCcCCCCcEEee-CCHHHHHHHHHHh
Confidence 45666654 67888888885 68999999432 222234567787 7888898888765
No 64
>PF09593 Pathogen_betaC1: Beta-satellite pathogenicity beta C1 protein; InterPro: IPR018583 Cotton leaf-curl disease - CLCuD - is of major economic importance in cotton-growing areas of the far-east. The infectious agent appears to be a single-stranded DNA molecule of approx 1350 nucleotides in length, which, when inoculated with the Begomovirus into cotton, induces symptoms typical of CLCuD. This molecule requires the Begomovirus for replication and encapsidation []. DNA beta encodes a single protein, betaC1. The intracellular distribution of betaC1 is consistent with the hypothesis that it has a role in transporting the DNA A of Begomovirus from the nuclear site of replication to the plasmodesmatal exit sites of the infected cell. The DNA beta-encoded protein, betaC1, is the determinant of both pathogenicity and suppression of gene silencing [].
Probab=28.48 E-value=54 Score=26.11 Aligned_cols=54 Identities=22% Similarity=0.249 Sum_probs=34.6
Q ss_pred cCeEEEeehhhHhhcCHHHHHhh-cCCCCCCCcceEEec-CC--CHHHHHHHHhhhhcCCC
Q 015430 211 NGETFAAHKLVLAARSPVFRAQL-YGPMKDQNTQCIKVE-DM--EAPVFKALLHFIYWDSL 267 (407)
Q Consensus 211 ~~~~~~~Hk~iLa~~S~~F~~~f-~~~~~e~~~~~i~l~-~~--~~~~f~~~L~~iYt~~~ 267 (407)
++.++.||-.+++.+||+..+.= .=++.- . .+..+ |+ -.+.....|.++|.+.-
T Consensus 20 ~~~~i~V~i~l~ST~sP~l~k~~f~IpY~~--~-~ii~PFDFNglEe~I~~~l~~mY~~s~ 77 (117)
T PF09593_consen 20 EDMSIFVHIQLFSTRSPALIKKKFIIPYTH--E-GIIPPFDFNGLEEGIKNTLKIMYKDSK 77 (117)
T ss_pred CCCEEEEEEEEEECCChHHheEEEEEeccC--C-CeECCcccCcHHHHHHHHHHHHhCCCC
Confidence 46799999999999999875421 111110 0 11111 22 35778999999999864
No 65
>PHA02790 Kelch-like protein; Provisional
Probab=28.37 E-value=86 Score=31.72 Aligned_cols=32 Identities=13% Similarity=0.078 Sum_probs=29.2
Q ss_pred chHHHHHHHHHHHhhcCchhHHHHHHHHHhhc
Q 015430 281 ASTLMSQHLLAAADRYGLERLRLLCEANLCED 312 (407)
Q Consensus 281 ~~~~~~~~ll~~A~~~~v~~L~~~c~~~l~~~ 312 (407)
++.+|..+++.+|+.|+++.|.+.+.+++.++
T Consensus 120 l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~n 151 (480)
T PHA02790 120 FRKEYCVECYMMGIEYGLSNLLCHTKDFIAKH 151 (480)
T ss_pred CCcchHHHHHHHHHHhCHHHHHHHHHHHHHHh
Confidence 66789999999999999999999999998764
No 66
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.52 E-value=2.9e+02 Score=29.33 Aligned_cols=68 Identities=15% Similarity=0.200 Sum_probs=39.1
Q ss_pred chHHHHHHHHHHHhhcCchhHHHHHHHHHhhcCChhhHHHHHHHHHhcCchHHHHHHHHhccCcccHHHHhcchhhhHH
Q 015430 281 ASTLMSQHLLAAADRYGLERLRLLCEANLCEDVAINTVATTLALAEQHHCFQLKSVCLKFVAMPENLRAVMQTDGFEYL 359 (407)
Q Consensus 281 ~~~~~~~~ll~~A~~~~v~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~l~~~~~f~~L 359 (407)
+-.+.+..+-.+|++|-.+- . .-++-.+.++.+|-.|..+++-...++++...+.+.......-|+-|
T Consensus 420 ireeivlKvAILaEKyAtDy------~-----WyVdviLqLiriagd~vsdeVW~RvvQiVvNnedlq~yaak~~fe~L 487 (938)
T KOG1077|consen 420 IREEIVLKVAILAEKYATDY------S-----WYVDVILQLIRIAGDYVSDEVWYRVVQIVVNNEDLQGYAAKRLFEYL 487 (938)
T ss_pred HHHHHHHHHHHHHHHhcCCc------c-----hhHHHHHHHHHHhcccccHHHHHHhheeEecchhhhHHHHHHHHHHH
Confidence 44455555555555554332 1 12344577788888888888888888887744444444444444444
No 67
>PF02637 GatB_Yqey: GatB domain; InterPro: IPR018027 The GatB domain, the function of which is uncertain, is associated with aspartyl/glutamyl amidotransferase subunit B and glutamyl amidotransferase subunit E. These are involved in the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln). ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 2D6F_D 3H0M_H 3H0R_K 3H0L_K 3KFU_F 3AL0_B 3IP4_B 2DF4_B 2G5I_B 2F2A_B ....
Probab=22.29 E-value=2.7e+02 Score=22.88 Aligned_cols=24 Identities=13% Similarity=0.350 Sum_probs=17.3
Q ss_pred EEecC--CCHHHHHHHHhhhhcCCCC
Q 015430 245 IKVED--MEAPVFKALLHFIYWDSLP 268 (407)
Q Consensus 245 i~l~~--~~~~~f~~~L~~iYt~~~~ 268 (407)
+.+.+ ++++.|..+++.+..+.+.
T Consensus 33 ~~~~~~~i~~~~l~~li~l~~~~~Is 58 (148)
T PF02637_consen 33 LDIEDSPISPEHLAELINLLEDGKIS 58 (148)
T ss_dssp --TTTSSSTHHHHHHHHHHHHTTSSG
T ss_pred CChhhcCCCHHHHHHHHHHHHcCCCC
Confidence 34444 7889999999988888764
Done!