Query 015431
Match_columns 407
No_of_seqs 291 out of 2124
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 12:30:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015431.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015431hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2g45_A Ubiquitin carboxyl-term 99.7 4.1E-19 1.4E-23 150.7 2.4 84 123-206 2-106 (129)
2 2i50_A Ubiquitin carboxyl-term 99.7 6.5E-19 2.2E-23 149.2 -0.8 105 112-218 3-118 (126)
3 3c5k_A HD6, histone deacetylas 99.6 3.8E-17 1.3E-21 134.8 3.3 63 145-207 24-86 (109)
4 2uzg_A Ubiquitin carboxyl-term 99.6 3.6E-16 1.2E-20 126.5 2.5 62 144-205 24-88 (97)
5 2ida_A Hypothetical protein; z 99.6 8.8E-16 3E-20 124.4 2.9 65 143-207 16-87 (102)
6 3ihp_A Ubiquitin carboxyl-term 99.5 7.1E-16 2.4E-20 169.0 -0.3 93 113-205 173-286 (854)
7 2ysl_A Tripartite motif-contai 99.0 3.5E-10 1.2E-14 85.9 5.0 49 89-141 15-68 (73)
8 4ap4_A E3 ubiquitin ligase RNF 99.0 7.5E-11 2.6E-15 99.8 1.2 81 92-172 5-106 (133)
9 2ecm_A Ring finger and CHY zin 99.0 1.7E-10 5.8E-15 82.7 2.9 49 93-141 4-54 (55)
10 2d8t_A Dactylidin, ring finger 99.0 3.6E-10 1.2E-14 85.7 4.6 48 90-141 11-60 (71)
11 1iym_A EL5; ring-H2 finger, ub 99.0 3.6E-10 1.2E-14 81.0 3.7 48 92-140 3-53 (55)
12 2yur_A Retinoblastoma-binding 98.9 4E-10 1.4E-14 86.2 3.7 50 88-141 9-63 (74)
13 4ayc_A E3 ubiquitin-protein li 98.9 1.8E-10 6.2E-15 99.0 1.9 45 93-141 52-98 (138)
14 2ea6_A Ring finger protein 4; 98.9 3.4E-10 1.2E-14 84.8 2.5 53 89-141 10-67 (69)
15 2djb_A Polycomb group ring fin 98.9 4.8E-10 1.7E-14 85.2 3.2 50 88-141 9-61 (72)
16 2ect_A Ring finger protein 126 98.9 1.2E-09 4E-14 84.2 5.4 51 90-141 11-63 (78)
17 2ecw_A Tripartite motif-contai 98.9 5.5E-10 1.9E-14 87.0 3.6 50 88-141 13-70 (85)
18 1x4j_A Ring finger protein 38; 98.9 4.8E-10 1.7E-14 85.8 3.1 51 91-142 20-72 (75)
19 2egp_A Tripartite motif-contai 98.9 5.5E-10 1.9E-14 86.1 3.5 49 89-141 7-64 (79)
20 2ecl_A Ring-box protein 2; RNF 98.9 9.1E-10 3.1E-14 85.9 4.4 50 92-141 13-75 (81)
21 3mhs_A Ubiquitin carboxyl-term 98.9 2.6E-10 9E-15 117.0 1.6 59 146-206 49-109 (476)
22 2ct2_A Tripartite motif protei 98.9 8.2E-10 2.8E-14 86.8 4.0 53 89-141 10-67 (88)
23 2ep4_A Ring finger protein 24; 98.9 1E-09 3.5E-14 83.7 4.4 51 90-141 11-63 (74)
24 2kiz_A E3 ubiquitin-protein li 98.9 8.5E-10 2.9E-14 82.9 3.8 50 91-141 11-62 (69)
25 2l0b_A E3 ubiquitin-protein li 98.9 5.2E-10 1.8E-14 89.2 2.6 49 92-141 38-88 (91)
26 1t1h_A Gspef-atpub14, armadill 98.9 7.2E-10 2.5E-14 85.4 3.1 47 91-141 5-54 (78)
27 2ecv_A Tripartite motif-contai 98.9 1.1E-09 3.8E-14 85.3 4.2 49 89-141 14-70 (85)
28 2ysj_A Tripartite motif-contai 98.9 7.5E-10 2.6E-14 81.8 2.9 44 89-136 15-63 (63)
29 2csy_A Zinc finger protein 183 98.9 9.6E-10 3.3E-14 85.4 3.6 47 91-141 12-60 (81)
30 3ng2_A RNF4, snurf, ring finge 98.9 3.9E-10 1.3E-14 85.1 1.0 51 91-141 7-62 (71)
31 3ztg_A E3 ubiquitin-protein li 98.9 6.9E-10 2.3E-14 88.3 2.3 47 90-140 9-60 (92)
32 2ecj_A Tripartite motif-contai 98.8 1.4E-09 5E-14 78.6 3.4 44 89-136 10-58 (58)
33 1g25_A CDK-activating kinase a 98.8 1.1E-09 3.7E-14 81.5 2.7 49 93-141 2-54 (65)
34 2ecy_A TNF receptor-associated 98.8 1.1E-09 3.7E-14 81.8 2.7 48 90-141 11-61 (66)
35 1bor_A Transcription factor PM 98.8 2.4E-09 8.1E-14 77.4 4.2 45 92-141 4-48 (56)
36 1e4u_A Transcriptional repress 98.8 1.9E-09 6.4E-14 83.6 3.6 53 89-141 6-61 (78)
37 3lrq_A E3 ubiquitin-protein li 98.8 6.4E-10 2.2E-14 90.2 0.7 47 91-141 19-69 (100)
38 3l11_A E3 ubiquitin-protein li 98.8 1.3E-09 4.5E-14 90.4 2.6 48 90-141 11-61 (115)
39 3fl2_A E3 ubiquitin-protein li 98.8 7E-10 2.4E-14 93.4 0.8 46 92-141 50-98 (124)
40 1v87_A Deltex protein 2; ring- 98.8 1.4E-09 4.8E-14 90.0 2.3 48 94-141 25-93 (114)
41 1jm7_B BARD1, BRCA1-associated 98.8 2.1E-09 7.1E-14 89.6 3.1 47 91-141 19-66 (117)
42 2xeu_A Ring finger protein 4; 98.8 1E-09 3.6E-14 80.9 0.8 49 93-141 2-55 (64)
43 2ecn_A Ring finger protein 141 98.8 2.1E-09 7.1E-14 81.0 2.4 48 89-141 10-59 (70)
44 1chc_A Equine herpes virus-1 r 98.7 2.2E-09 7.5E-14 80.4 1.6 46 93-141 4-51 (68)
45 2ckl_A Polycomb group ring fin 98.7 2.8E-09 9.6E-14 87.5 2.3 47 91-141 12-61 (108)
46 1wgm_A Ubiquitin conjugation f 98.7 7.9E-09 2.7E-13 83.6 4.8 48 90-141 18-68 (98)
47 2y43_A E3 ubiquitin-protein li 98.7 2.2E-09 7.6E-14 86.6 1.3 46 92-141 20-68 (99)
48 2kr4_A Ubiquitin conjugation f 98.7 7.1E-09 2.4E-13 81.6 3.4 48 90-141 10-59 (85)
49 3dpl_R Ring-box protein 1; ubi 98.7 7.1E-09 2.4E-13 85.0 3.2 49 93-141 36-100 (106)
50 2kre_A Ubiquitin conjugation f 98.7 8.1E-09 2.8E-13 83.8 3.2 47 91-141 26-74 (100)
51 4ic3_A E3 ubiquitin-protein li 98.7 7.4E-09 2.5E-13 79.2 2.7 44 92-141 22-66 (74)
52 1z6u_A NP95-like ring finger p 98.7 3.4E-09 1.2E-13 92.4 0.8 46 92-141 76-124 (150)
53 2d8s_A Cellular modulator of i 98.7 1.6E-08 5.3E-13 78.7 4.2 49 91-141 12-69 (80)
54 1jm7_A BRCA1, breast cancer ty 98.6 3.9E-09 1.3E-13 86.8 0.4 45 93-141 20-69 (112)
55 3hct_A TNF receptor-associated 98.6 1E-08 3.4E-13 85.6 2.1 48 90-141 14-64 (118)
56 2ckl_B Ubiquitin ligase protei 98.6 7.4E-09 2.5E-13 91.5 0.3 47 91-141 51-101 (165)
57 1rmd_A RAG1; V(D)J recombinati 98.6 1.1E-08 3.8E-13 84.9 0.9 46 92-141 21-69 (116)
58 4a0k_B E3 ubiquitin-protein li 98.5 1.4E-08 4.6E-13 84.7 0.3 49 93-141 47-111 (117)
59 2yu4_A E3 SUMO-protein ligase 98.5 3.6E-08 1.2E-12 78.9 2.2 45 91-139 4-59 (94)
60 3knv_A TNF receptor-associated 98.5 1.3E-08 4.4E-13 87.8 -0.5 47 91-141 28-77 (141)
61 2c2l_A CHIP, carboxy terminus 98.5 5.6E-08 1.9E-12 92.3 3.1 46 92-141 206-254 (281)
62 2yho_A E3 ubiquitin-protein li 98.4 1.1E-07 3.8E-12 73.7 2.6 44 92-141 16-60 (79)
63 2ecg_A Baculoviral IAP repeat- 98.4 1.1E-07 3.6E-12 72.8 2.1 44 92-141 23-67 (75)
64 4ap4_A E3 ubiquitin ligase RNF 98.3 8.2E-08 2.8E-12 80.8 0.9 50 92-141 70-124 (133)
65 3hcs_A TNF receptor-associated 98.3 1.2E-07 4.3E-12 83.9 2.1 48 90-141 14-64 (170)
66 2y1n_A E3 ubiquitin-protein li 98.3 2E-07 6.7E-12 92.7 3.4 44 94-141 332-378 (389)
67 2f42_A STIP1 homology and U-bo 98.3 1.4E-07 4.9E-12 84.2 2.0 46 92-141 104-152 (179)
68 2vje_A E3 ubiquitin-protein li 98.3 1.3E-07 4.4E-12 70.2 0.8 46 92-141 6-56 (64)
69 3htk_C E3 SUMO-protein ligase 98.2 3.3E-07 1.1E-11 86.1 2.3 48 90-141 177-231 (267)
70 3t6p_A Baculoviral IAP repeat- 98.2 5.3E-07 1.8E-11 88.8 4.0 44 92-141 293-337 (345)
71 2ea5_A Cell growth regulator w 98.2 1.4E-06 4.7E-11 65.4 4.4 44 92-141 13-57 (68)
72 2vje_B MDM4 protein; proto-onc 98.2 3.1E-07 1.1E-11 67.8 0.8 45 93-141 6-55 (63)
73 2ct0_A Non-SMC element 1 homol 98.0 3.6E-06 1.2E-10 64.2 3.0 47 92-141 13-63 (74)
74 1wim_A KIAA0161 protein; ring 97.9 2E-06 6.9E-11 68.5 0.3 47 92-139 3-61 (94)
75 1vyx_A ORF K3, K3RING; zinc-bi 97.7 7.3E-06 2.5E-10 59.9 1.2 46 92-141 4-58 (60)
76 3k1l_B Fancl; UBC, ring, RWD, 97.6 1.5E-05 5.1E-10 77.3 1.3 50 92-141 306-372 (381)
77 2bay_A PRE-mRNA splicing facto 97.5 3.1E-05 1.1E-09 56.7 1.5 43 95-141 4-49 (61)
78 3vk6_A E3 ubiquitin-protein li 97.3 0.0001 3.6E-09 58.7 2.7 65 96-171 3-70 (101)
79 2jun_A Midline-1; B-BOX, TRIM, 96.5 0.0011 3.9E-08 52.9 2.7 75 93-172 2-86 (101)
80 2dfs_A Myosin-5A; myosin-V, in 94.6 0.47 1.6E-05 53.1 15.2 72 299-370 979-1050(1080)
81 3nw0_A Non-structural maintena 94.6 0.014 4.8E-07 54.2 2.5 46 93-141 179-228 (238)
82 3ghg_A Fibrinogen alpha chain; 93.4 1.1 3.9E-05 45.3 13.6 15 361-375 174-188 (562)
83 3hnw_A Uncharacterized protein 93.0 3.2 0.00011 34.9 14.0 67 296-366 67-133 (138)
84 3tnu_B Keratin, type II cytosk 91.9 1.4 4.9E-05 36.5 10.5 27 298-324 37-63 (129)
85 3ol1_A Vimentin; structural ge 91.8 3.6 0.00012 33.6 12.6 33 328-360 86-118 (119)
86 3tnu_A Keratin, type I cytoske 91.4 1.3 4.4E-05 36.9 9.7 58 298-362 39-96 (131)
87 2v71_A Nuclear distribution pr 91.1 7.7 0.00026 34.3 16.4 9 351-359 131-139 (189)
88 2dfs_A Myosin-5A; myosin-V, in 90.0 4.6 0.00016 45.2 15.3 20 297-316 991-1010(1080)
89 3mq9_A Bone marrow stromal ant 89.8 11 0.00038 37.6 16.9 19 295-313 402-420 (471)
90 2dgw_A Probable RNA-binding pr 89.2 0.35 1.2E-05 36.8 4.0 54 1-57 22-75 (91)
91 3na7_A HP0958; flagellar bioge 88.7 14 0.0005 33.9 16.6 30 328-357 128-157 (256)
92 3ghg_A Fibrinogen alpha chain; 88.3 19 0.00065 36.5 16.7 43 321-363 134-189 (562)
93 3na7_A HP0958; flagellar bioge 88.1 16 0.00054 33.6 19.7 42 321-362 128-169 (256)
94 1gs9_A Apolipoprotein E, APOE4 87.3 1.5 5.1E-05 38.1 7.2 39 318-359 121-159 (165)
95 3oja_B Anopheles plasmodium-re 87.2 19 0.00066 36.8 17.0 12 351-362 559-570 (597)
96 3mq9_A Bone marrow stromal ant 86.2 21 0.00073 35.4 16.3 13 300-312 400-412 (471)
97 3r2p_A Apolipoprotein A-I; amp 85.9 17 0.00057 31.7 13.5 57 256-313 71-127 (185)
98 1nfn_A Apolipoprotein E3; lipi 85.8 5.6 0.00019 35.2 10.3 24 252-275 55-78 (191)
99 1deq_A Fibrinogen (alpha chain 85.7 22 0.00074 34.7 14.9 14 361-374 177-190 (390)
100 3oja_B Anopheles plasmodium-re 85.4 23 0.00077 36.3 16.4 13 351-363 566-578 (597)
101 3s4r_A Vimentin; alpha-helix, 85.0 7.9 0.00027 30.1 9.7 59 298-362 10-68 (93)
102 3vkg_A Dynein heavy chain, cyt 84.0 23 0.00077 44.2 17.4 36 332-367 2014-2052(3245)
103 2lri_C Autoimmune regulator; Z 83.3 1.8 6.1E-05 31.6 4.9 43 93-139 11-59 (66)
104 2fy1_A RNA-binding motif prote 83.2 1.1 3.7E-05 36.0 4.1 56 1-57 19-74 (116)
105 2ko5_A Ring finger protein Z; 83.1 0.64 2.2E-05 36.4 2.4 47 89-141 23-72 (99)
106 2lem_A Apolipoprotein A-I; lip 83.0 25 0.00086 31.4 13.7 97 247-344 60-172 (216)
107 2ysm_A Myeloid/lymphoid or mix 83.0 1.5 5.3E-05 35.1 4.9 37 92-129 5-41 (111)
108 2a01_A Apolipoprotein A-I; fou 83.0 21 0.00073 32.5 13.4 24 250-273 97-120 (243)
109 2dgv_A HnRNP M, heterogeneous 82.8 1.4 4.7E-05 33.3 4.4 55 1-57 20-74 (92)
110 2dhg_A TRNA selenocysteine ass 82.6 1.8 6.2E-05 33.5 5.1 57 1-57 21-78 (104)
111 3bs9_A Nucleolysin TIA-1 isofo 82.3 1.2 4.1E-05 33.2 3.8 56 1-57 18-74 (87)
112 2dng_A Eukaryotic translation 81.8 1.3 4.6E-05 34.3 4.1 54 1-57 27-81 (103)
113 3bas_A Myosin heavy chain, str 81.8 16 0.00053 28.1 12.4 65 298-366 22-86 (89)
114 2d9p_A Polyadenylate-binding p 81.5 1.1 3.7E-05 34.8 3.4 55 1-57 27-81 (103)
115 2do4_A Squamous cell carcinoma 81.3 1.3 4.4E-05 34.1 3.8 56 1-57 29-84 (100)
116 2dnh_A Bruno-like 5, RNA bindi 80.9 2.3 7.7E-05 33.0 5.1 57 1-58 27-83 (105)
117 2v66_B Nuclear distribution pr 80.9 20 0.00069 28.8 11.2 16 309-324 40-55 (111)
118 2cq3_A RNA-binding protein 9; 80.9 1.5 5E-05 34.0 4.0 55 1-57 27-81 (103)
119 2ywk_A Putative RNA-binding pr 80.8 1.7 5.7E-05 33.0 4.2 56 1-57 28-83 (95)
120 1m1j_A Fibrinogen alpha subuni 80.5 49 0.0017 33.0 17.0 15 361-375 175-189 (491)
121 2cqi_A Nucleolysin TIAR; RNA r 80.3 1.7 6E-05 33.5 4.3 55 1-57 27-81 (103)
122 3md1_A Nuclear and cytoplasmic 79.7 1.6 5.6E-05 32.1 3.7 56 1-57 13-69 (83)
123 4gne_A Histone-lysine N-methyl 79.3 2.6 9E-05 33.8 5.0 66 91-172 12-84 (107)
124 3s84_A Apolipoprotein A-IV; fo 79.2 41 0.0014 31.3 17.9 13 295-307 64-76 (273)
125 2do0_A HnRNP M, heterogeneous 78.7 1.6 5.4E-05 34.5 3.5 56 1-57 27-82 (114)
126 1x5o_A RNA binding motif, sing 78.5 1.5 5.2E-05 34.6 3.4 57 1-58 37-93 (114)
127 3swf_A CGMP-gated cation chann 78.1 12 0.00041 27.8 7.8 40 322-361 11-50 (74)
128 3oja_A Leucine-rich immune mol 77.9 28 0.00096 34.7 13.5 17 264-280 364-380 (487)
129 3nmr_A Cugbp ELAV-like family 77.8 3.2 0.00011 34.7 5.5 57 1-58 107-163 (175)
130 2x1f_A MRNA 3'-END-processing 77.7 1.5 5.2E-05 33.5 3.1 56 1-57 14-70 (96)
131 1p1t_A Cleavage stimulation fa 77.3 2.5 8.7E-05 32.5 4.3 56 1-57 20-76 (104)
132 2dgo_A Cytotoxic granule-assoc 77.2 2.2 7.6E-05 33.7 4.0 56 1-57 27-83 (115)
133 2cpz_A CUG triplet repeat RNA- 77.1 2.2 7.7E-05 33.7 4.0 56 1-57 37-93 (115)
134 3swy_A Cyclic nucleotide-gated 77.0 10 0.00034 25.6 6.5 36 323-358 10-45 (46)
135 1x5s_A Cold-inducible RNA-bind 76.7 3 0.0001 32.1 4.6 56 1-57 24-80 (102)
136 1x5t_A Splicing factor 3B subu 76.6 1.8 6.1E-05 32.9 3.2 56 1-57 17-74 (96)
137 2div_A TRNA selenocysteine ass 76.5 2.9 9.8E-05 31.9 4.4 58 1-59 21-80 (99)
138 2err_A Ataxin-2-binding protei 76.3 1.7 5.9E-05 34.2 3.1 55 1-57 41-95 (109)
139 2ocy_A RAB guanine nucleotide 75.8 36 0.0012 28.9 15.0 29 338-366 117-145 (154)
140 1whw_A Hypothetical protein ri 75.3 2 6.8E-05 32.9 3.2 56 1-57 20-76 (99)
141 2a01_A Apolipoprotein A-I; fou 75.3 21 0.00073 32.5 10.8 26 318-343 147-172 (243)
142 3ulh_A THO complex subunit 4; 75.2 2.8 9.5E-05 32.5 4.1 56 1-57 41-96 (107)
143 3v43_A Histone acetyltransfera 75.1 3.3 0.00011 33.3 4.5 46 93-138 4-63 (112)
144 3md3_A Nuclear and cytoplasmic 75.0 2.6 8.9E-05 34.9 4.1 56 1-57 12-67 (166)
145 2kwj_A Zinc finger protein DPF 74.8 1.7 6E-05 35.1 2.8 43 95-137 2-59 (114)
146 2fxo_A Myosin heavy chain, car 74.8 33 0.0011 28.0 18.9 20 344-363 105-124 (129)
147 4fxv_A ELAV-like protein 1; RN 74.3 3.3 0.00011 32.1 4.2 56 1-57 31-87 (99)
148 2jrp_A Putative cytoplasmic pr 74.3 2.1 7.3E-05 32.6 2.9 58 95-167 3-61 (81)
149 4f25_A Polyadenylate-binding p 74.1 2.5 8.7E-05 33.6 3.6 55 1-57 17-71 (115)
150 2jrs_A RNA-binding protein 39; 74.0 2.6 9E-05 33.2 3.7 56 1-57 38-94 (108)
151 2cqc_A Arginine/serine-rich sp 73.8 2.7 9.1E-05 31.8 3.5 56 1-57 27-83 (95)
152 2dnz_A Probable RNA-binding pr 73.7 2.6 8.9E-05 31.9 3.5 56 1-57 17-73 (95)
153 1m1j_B Fibrinogen beta chain; 73.6 78 0.0027 31.8 18.2 19 347-365 179-197 (464)
154 1x4e_A RNA binding motif, sing 73.5 1.5 5.1E-05 32.6 2.0 56 1-57 17-73 (85)
155 2cq0_A Eukaryotic translation 73.2 2.7 9.2E-05 32.4 3.5 56 1-57 27-83 (103)
156 3vkg_A Dynein heavy chain, cyt 73.2 60 0.002 40.6 16.4 20 353-372 2059-2078(3245)
157 1p27_B RNA-binding protein 8A; 72.8 4.2 0.00015 31.4 4.6 56 1-57 35-91 (106)
158 1i84_S Smooth muscle myosin he 72.8 16 0.00053 41.3 10.8 6 122-127 681-686 (1184)
159 3mdf_A Peptidyl-prolyl CIS-tra 72.8 1.9 6.5E-05 31.8 2.4 56 1-57 19-75 (85)
160 2dnm_A SRP46 splicing factor; 72.7 1.9 6.6E-05 33.3 2.5 56 1-57 25-81 (103)
161 2cpf_A RNA binding motif prote 72.5 2.2 7.6E-05 32.5 2.8 56 1-57 17-76 (98)
162 3o36_A Transcription intermedi 72.2 4 0.00014 35.7 4.7 45 93-141 3-53 (184)
163 3p5t_L Cleavage and polyadenyl 72.2 3.6 0.00012 30.9 3.9 57 1-57 13-71 (90)
164 2jwn_A Embryonic polyadenylate 72.1 4.2 0.00014 32.4 4.6 55 1-57 48-103 (124)
165 2jee_A YIIU; FTSZ, septum, coi 71.7 30 0.001 26.1 11.6 28 311-338 48-75 (81)
166 2xs2_A Deleted in azoospermia- 71.7 3.5 0.00012 31.7 3.8 48 1-49 21-68 (102)
167 2dnp_A RNA-binding protein 14; 71.6 2.6 8.7E-05 31.7 2.9 49 1-57 21-69 (90)
168 3ucg_A Polyadenylate-binding p 71.6 5.3 0.00018 29.6 4.8 55 1-57 18-73 (89)
169 4dci_A Uncharacterized protein 71.5 22 0.00075 30.2 8.9 37 349-388 83-119 (150)
170 3u5n_A E3 ubiquitin-protein li 71.5 3.1 0.00011 37.2 3.9 44 93-140 6-55 (207)
171 2mss_A Protein (musashi1); RNA 71.1 3.8 0.00013 29.4 3.7 55 1-57 11-66 (75)
172 1we9_A PHD finger family prote 71.1 2.9 0.0001 29.9 3.0 36 92-127 4-39 (64)
173 2kt5_A RNA and export factor-b 71.1 3.5 0.00012 33.1 3.8 56 1-57 47-102 (124)
174 2yql_A PHD finger protein 21A; 71.0 2.1 7.1E-05 29.9 2.1 33 91-127 6-38 (56)
175 2j76_E EIF-4B, EIF4B, eukaryot 70.9 1.3 4.5E-05 34.3 1.1 54 1-57 31-86 (100)
176 2cqb_A Peptidyl-prolyl CIS-tra 70.6 2.1 7.3E-05 32.9 2.3 56 1-57 24-80 (102)
177 2la6_A RNA-binding protein FUS 70.6 4.5 0.00016 30.9 4.3 56 1-57 25-89 (99)
178 2ki2_A SS-DNA binding protein 70.6 6 0.00021 29.4 4.9 55 1-57 13-68 (90)
179 2cs3_A Protein C14ORF4, MY039 70.4 3.5 0.00012 31.2 3.2 35 92-128 13-49 (93)
180 1x5u_A Splicing factor 3B subu 70.4 3 0.0001 32.2 3.2 56 1-57 27-83 (105)
181 2e5h_A Zinc finger CCHC-type a 70.4 1.9 6.4E-05 32.7 1.9 56 1-57 28-84 (94)
182 2hzc_A Splicing factor U2AF 65 70.3 5 0.00017 29.6 4.3 51 1-57 18-78 (87)
183 3nmr_A Cugbp ELAV-like family 70.3 5.7 0.00019 33.1 5.2 56 1-57 15-73 (175)
184 1wi8_A EIF-4B, eukaryotic tran 70.3 1.9 6.6E-05 33.4 2.0 54 1-57 27-82 (104)
185 1mm2_A MI2-beta; PHD, zinc fin 70.2 4.4 0.00015 28.8 3.7 43 92-138 7-55 (61)
186 2dgp_A Bruno-like 4, RNA bindi 70.2 7.6 0.00026 29.8 5.6 55 1-56 25-80 (106)
187 2dis_A Unnamed protein product 70.1 4.1 0.00014 31.7 3.9 57 1-57 20-80 (109)
188 1oo0_B CG8781-PA, drosophila Y 69.8 3.1 0.00011 32.5 3.2 56 1-57 38-94 (110)
189 2l5u_A Chromodomain-helicase-D 69.4 4.8 0.00017 28.6 3.8 32 92-127 9-40 (61)
190 1u6f_A Tcubp1, RNA-binding pro 69.1 5.8 0.0002 32.3 4.9 56 1-57 54-110 (139)
191 2cph_A RNA binding motif prote 68.8 3.3 0.00011 32.1 3.0 56 1-57 27-85 (107)
192 1nfn_A Apolipoprotein E3; lipi 68.5 8.6 0.00029 34.0 6.1 23 321-343 124-146 (191)
193 2krb_A Eukaryotic translation 68.3 2.5 8.5E-05 31.1 2.2 53 4-58 22-74 (81)
194 2dnn_A RNA-binding protein 12; 68.3 3.5 0.00012 32.9 3.1 53 1-56 28-80 (109)
195 1fxl_A Paraneoplastic encephal 67.9 4.3 0.00015 33.5 3.8 56 1-57 14-70 (167)
196 3a7p_A Autophagy protein 16; c 67.9 55 0.0019 27.7 11.7 42 298-339 76-117 (152)
197 1x4g_A Nucleolysin TIAR; struc 67.6 3.8 0.00013 32.0 3.3 51 1-57 37-87 (109)
198 2ku7_A MLL1 PHD3-CYP33 RRM chi 67.6 3.1 0.0001 33.9 2.8 56 1-57 75-131 (140)
199 3nmd_A CGMP dependent protein 67.5 23 0.00078 26.2 7.1 22 340-361 44-65 (72)
200 2kxn_B Transformer-2 protein h 67.0 4.2 0.00014 33.2 3.5 56 1-57 58-114 (129)
201 2db1_A Heterogeneous nuclear r 66.8 4.9 0.00017 32.1 3.8 55 1-56 29-85 (118)
202 2la4_A Nuclear and cytoplasmic 66.6 3.8 0.00013 31.4 3.0 51 1-57 39-89 (101)
203 1gk4_A Vimentin; intermediate 66.5 29 0.00098 26.2 7.9 6 333-338 34-39 (84)
204 3s8s_A Histone-lysine N-methyl 66.1 5.2 0.00018 31.7 3.8 56 1-57 18-74 (110)
205 2v66_B Nuclear distribution pr 66.0 47 0.0016 26.6 9.3 11 351-361 57-67 (111)
206 1f5n_A Interferon-induced guan 66.0 98 0.0033 32.1 14.4 15 350-364 567-581 (592)
207 2e7s_A RAB guanine nucleotide 65.9 19 0.00064 30.0 7.1 26 341-366 108-133 (135)
208 4a8x_A RNA-binding protein wit 65.9 2.6 8.8E-05 31.3 1.8 56 1-57 16-73 (88)
209 1fp0_A KAP-1 corepressor; PHD 65.7 8.8 0.0003 29.6 4.8 44 91-138 22-71 (88)
210 2dh8_A DAZ-associated protein 65.7 6.3 0.00021 30.3 4.2 55 1-57 28-83 (105)
211 1m1j_C Fibrinogen gamma chain; 65.7 1.1E+02 0.0037 30.2 15.9 20 347-366 116-135 (409)
212 1iml_A CRIP, cysteine rich int 65.6 2.9 9.9E-05 30.7 2.0 38 95-141 1-38 (76)
213 2lxi_A RNA-binding protein 10; 65.5 3.6 0.00012 31.2 2.6 51 1-51 13-64 (91)
214 2cpy_A RNA-binding protein 12; 65.5 3.3 0.00011 32.8 2.5 55 1-57 27-82 (114)
215 3r2p_A Apolipoprotein A-I; amp 65.4 54 0.0019 28.3 10.7 25 318-342 148-172 (185)
216 2e6r_A Jumonji/ARID domain-con 65.4 3.7 0.00013 31.9 2.6 37 90-127 12-48 (92)
217 1m1j_B Fibrinogen beta chain; 65.2 1.2E+02 0.004 30.5 18.6 28 343-370 168-195 (464)
218 2g4b_A Splicing factor U2AF 65 64.9 6.2 0.00021 32.9 4.3 56 1-57 106-162 (172)
219 3trt_A Vimentin; cytoskeleton, 64.8 39 0.0013 24.8 11.4 35 248-282 9-43 (77)
220 2w83_C C-JUN-amino-terminal ki 64.6 41 0.0014 25.0 9.1 10 351-360 66-75 (77)
221 1wg1_A KIAA1579 protein, homol 64.4 2.9 9.8E-05 31.4 1.8 50 1-57 17-66 (88)
222 2l7b_A Apolipoprotein E, APO-E 64.4 60 0.0021 30.7 11.5 19 253-271 64-82 (307)
223 2lkz_A RNA-binding protein 5; 64.3 4.2 0.00015 31.4 2.8 55 1-55 21-77 (95)
224 3lqh_A Histone-lysine N-methyl 64.3 4.3 0.00015 35.8 3.2 46 95-140 3-64 (183)
225 1fxl_A Paraneoplastic encephal 64.3 7.1 0.00024 32.1 4.5 57 1-58 100-157 (167)
226 2cpe_A RNA-binding protein EWS 64.2 3.4 0.00012 32.4 2.3 56 1-57 27-91 (113)
227 3lqv_A PRE-mRNA branch site pr 64.0 5.3 0.00018 31.4 3.4 54 1-57 20-73 (115)
228 3efg_A Protein SLYX homolog; x 63.8 30 0.001 25.9 7.4 26 343-368 35-60 (78)
229 3md3_A Nuclear and cytoplasmic 63.7 6.3 0.00022 32.4 4.1 56 1-57 99-155 (166)
230 1x62_A C-terminal LIM domain p 63.5 6.9 0.00023 28.9 3.8 41 90-140 11-51 (79)
231 2w83_C C-JUN-amino-terminal ki 63.3 44 0.0015 24.9 9.3 38 305-342 38-75 (77)
232 1xwh_A Autoimmune regulator; P 63.1 3.2 0.00011 30.0 1.8 32 92-127 6-37 (66)
233 1s79_A Lupus LA protein; RRM, 63.0 7.2 0.00024 30.5 4.0 55 1-57 23-77 (103)
234 2hvz_A Splicing factor, argini 63.0 4.7 0.00016 30.9 2.9 52 1-57 12-63 (101)
235 2ytc_A PRE-mRNA-splicing facto 62.9 4.4 0.00015 29.8 2.6 51 1-57 24-75 (85)
236 2dgs_A DAZ-associated protein 62.9 4.8 0.00017 30.7 2.9 55 1-57 22-77 (99)
237 2fc8_A NCL protein; structure 62.0 7.7 0.00026 29.6 4.0 53 1-57 27-80 (102)
238 2khc_A Testis-specific RNP-typ 61.8 3.9 0.00013 32.3 2.3 56 1-57 52-108 (118)
239 2cqd_A RNA-binding region cont 61.7 5.1 0.00017 31.6 3.0 54 1-56 29-83 (116)
240 1x64_A Alpha-actinin-2 associa 61.5 12 0.00042 28.1 5.0 42 90-141 21-62 (89)
241 2qfj_A FBP-interacting repress 61.3 6 0.0002 34.4 3.6 56 1-57 40-96 (216)
242 1h2v_Z 20 kDa nuclear CAP bind 61.1 7.4 0.00025 32.4 4.0 56 1-57 51-107 (156)
243 3lay_A Zinc resistance-associa 61.0 54 0.0018 28.4 9.6 30 344-375 114-143 (175)
244 1wil_A KIAA1045 protein; ring 60.9 8.7 0.0003 29.4 3.8 34 93-128 14-47 (89)
245 2jun_A Midline-1; B-BOX, TRIM, 60.8 2.9 9.8E-05 32.5 1.3 62 145-207 3-83 (101)
246 2cpj_A Non-POU domain-containi 60.5 4.5 0.00015 30.9 2.3 51 1-57 27-77 (99)
247 2kn4_A Immunoglobulin G-bindin 60.4 6.7 0.00023 32.6 3.7 56 1-57 82-138 (158)
248 1f62_A Transcription factor WS 60.3 7.1 0.00024 26.4 3.1 31 96-127 2-32 (51)
249 2fc9_A NCL protein; structure 60.0 6.1 0.00021 30.2 3.1 53 1-57 27-79 (101)
250 1rk8_A CG8781-PA, CG8781-PA pr 59.6 8.5 0.00029 32.5 4.2 56 1-57 84-140 (165)
251 2dgt_A RNA-binding protein 30; 59.5 4.8 0.00017 30.2 2.3 49 1-57 22-70 (92)
252 1b7f_A Protein (SXL-lethal pro 58.8 6.9 0.00024 32.4 3.4 57 1-58 101-158 (168)
253 1deq_A Fibrinogen (alpha chain 58.7 1.1E+02 0.0039 29.6 12.2 76 261-336 54-131 (390)
254 2yt5_A Metal-response element- 58.7 5.5 0.00019 28.5 2.4 36 92-127 4-40 (66)
255 2l7b_A Apolipoprotein E, APO-E 58.6 17 0.0006 34.5 6.6 6 195-200 40-45 (307)
256 1i84_S Smooth muscle myosin he 58.6 56 0.0019 36.8 11.8 6 100-105 523-528 (1184)
257 2cq4_A RNA binding motif prote 58.4 5.2 0.00018 31.4 2.4 55 1-57 37-92 (114)
258 2zqm_A Prefoldin beta subunit 57.9 66 0.0023 25.2 12.1 19 318-336 70-88 (117)
259 1go4_E MAD1 (mitotic arrest de 57.8 56 0.0019 25.7 8.2 14 350-363 75-88 (100)
260 3n9u_C Cleavage and polyadenyl 57.8 9.7 0.00033 32.2 4.2 57 1-57 67-125 (156)
261 3cvf_A Homer-3, homer protein 57.6 58 0.002 24.4 9.1 15 265-279 4-18 (79)
262 3ex7_B RNA-binding protein 8A; 57.6 5.7 0.0002 31.7 2.6 56 1-57 34-90 (126)
263 4f02_A Polyadenylate-binding p 57.4 7.4 0.00025 34.2 3.6 55 1-57 115-169 (213)
264 2lmi_A GRSF-1, G-rich sequence 57.3 5.8 0.0002 30.9 2.5 56 1-57 23-80 (107)
265 1x4a_A Splicing factor, argini 57.3 6.5 0.00022 30.5 2.8 54 1-57 34-87 (109)
266 3nmd_A CGMP dependent protein 57.2 49 0.0017 24.4 7.3 23 345-367 42-64 (72)
267 2e44_A Insulin-like growth fac 57.1 13 0.00044 27.9 4.5 53 1-57 27-80 (96)
268 1why_A Hypothetical protein ri 57.1 5.7 0.00019 30.2 2.4 51 1-57 29-79 (97)
269 2jee_A YIIU; FTSZ, septum, coi 57.0 61 0.0021 24.5 11.8 19 311-329 27-45 (81)
270 3v43_A Histone acetyltransfera 56.9 8.2 0.00028 30.9 3.4 32 96-127 63-94 (112)
271 2dgu_A Heterogeneous nuclear r 56.7 6.5 0.00022 30.3 2.7 49 1-57 23-71 (103)
272 1fxk_A Prefoldin; archaeal pro 56.6 66 0.0023 24.8 12.2 19 318-336 65-83 (107)
273 3s7r_A Heterogeneous nuclear r 56.4 11 0.00036 27.8 3.8 52 1-54 23-75 (87)
274 3oja_A Leucine-rich immune mol 56.2 1.6E+02 0.0054 29.1 15.7 8 262-269 373-380 (487)
275 2qfj_A FBP-interacting repress 56.2 8.3 0.00028 33.4 3.7 56 1-57 137-193 (216)
276 2cpi_A CCR4-NOT transcription 56.2 7.4 0.00025 30.5 3.0 55 2-57 28-89 (111)
277 2pe8_A Splicing factor 45; RRM 55.4 11 0.00038 29.5 3.9 53 4-57 28-82 (105)
278 2a20_A Regulating synaptic mem 55.3 3.2 0.00011 29.5 0.5 37 91-128 6-43 (62)
279 2ro1_A Transcription intermedi 55.2 6 0.00021 34.9 2.5 41 95-139 3-49 (189)
280 2dgx_A KIAA0430 protein; RRM d 55.0 8.2 0.00028 29.3 3.0 53 2-57 22-78 (96)
281 2f3j_A RNA and export factor b 54.9 9.1 0.00031 33.0 3.6 56 1-57 100-155 (177)
282 1x4h_A RNA-binding protein 28; 54.8 8.2 0.00028 29.9 3.0 55 1-56 27-88 (111)
283 2k16_A Transcription initiatio 54.5 7.2 0.00025 28.7 2.5 46 92-138 16-67 (75)
284 2i2y_A Fusion protein consists 54.2 11 0.00037 31.1 3.9 52 1-57 85-136 (150)
285 1wez_A HnRNP H', FTP-3, hetero 54.2 8.9 0.0003 29.7 3.1 54 1-57 27-80 (102)
286 3smz_A Protein raver-1, ribonu 54.0 8.3 0.00028 35.3 3.4 54 2-56 198-251 (284)
287 1wle_A Seryl-tRNA synthetase; 54.0 71 0.0024 32.4 10.6 16 348-363 135-150 (501)
288 1uaw_A Mouse-musashi-1; RNP-ty 54.0 12 0.00042 26.6 3.7 51 1-52 12-63 (77)
289 3lss_A Seryl-tRNA synthetase; 54.0 62 0.0021 32.7 10.0 22 344-365 119-140 (484)
290 2zet_C Melanophilin; complex, 53.8 4.9 0.00017 34.3 1.6 32 93-124 67-99 (153)
291 1x8y_A Lamin A/C; structural p 53.8 22 0.00074 27.1 5.2 7 332-338 35-41 (86)
292 2puy_A PHD finger protein 21A; 53.7 5.6 0.00019 28.1 1.7 31 93-127 4-34 (60)
293 2hgl_A HNRPF protein, heteroge 53.6 7.5 0.00026 32.2 2.7 56 1-57 56-113 (136)
294 1b7f_A Protein (SXL-lethal pro 53.6 6.3 0.00021 32.6 2.3 56 1-57 15-71 (168)
295 3mov_A Lamin-B1; LMNB1, B-type 53.5 21 0.00073 27.8 5.2 14 328-341 40-53 (95)
296 2eqb_B RAB guanine nucleotide 53.2 79 0.0027 24.7 12.9 20 263-282 15-34 (97)
297 1wt6_A Myotonin-protein kinase 52.2 72 0.0025 24.0 7.5 7 355-361 64-70 (81)
298 1jmt_A Splicing factor U2AF 35 52.2 13 0.00046 28.9 3.9 43 15-57 52-94 (104)
299 2cq2_A Hypothetical protein LO 51.6 14 0.00047 29.8 3.9 66 2-73 40-107 (114)
300 3ns6_A Eukaryotic translation 51.2 5 0.00017 30.9 1.2 53 4-57 27-80 (100)
301 2v4h_A NF-kappa-B essential mo 51.2 92 0.0031 24.8 12.2 19 347-365 87-105 (110)
302 3sde_A Paraspeckle component 1 50.8 19 0.00065 32.7 5.3 64 2-66 109-173 (261)
303 2ek1_A RNA-binding protein 12; 50.8 10 0.00034 28.4 2.9 56 1-57 27-83 (95)
304 3qne_A Seryl-tRNA synthetase, 50.4 98 0.0033 31.3 10.8 18 348-365 90-107 (485)
305 1iqt_A AUF1, heterogeneous nuc 50.4 13 0.00044 26.4 3.3 54 1-56 11-65 (75)
306 3trt_A Vimentin; cytoskeleton, 50.2 71 0.0024 23.3 11.2 23 261-283 7-29 (77)
307 1t6f_A Geminin; coiled-coil, c 50.2 27 0.00091 22.0 4.1 24 340-363 11-34 (37)
308 2yh0_A Splicing factor U2AF 65 50.1 13 0.00044 31.7 3.8 56 1-57 126-182 (198)
309 2dq0_A Seryl-tRNA synthetase; 49.8 1E+02 0.0034 30.8 10.8 19 347-365 87-105 (455)
310 2cup_A Skeletal muscle LIM-pro 49.8 15 0.00051 28.2 3.8 67 93-167 4-76 (101)
311 2ghp_A U4/U6 snRNA-associated 49.7 11 0.00037 34.6 3.5 55 1-57 223-279 (292)
312 2lea_A Serine/arginine-rich sp 49.7 7 0.00024 32.0 1.9 55 2-57 60-115 (135)
313 3q2s_C Cleavage and polyadenyl 49.1 16 0.00054 32.9 4.4 57 1-57 80-138 (229)
314 1x4c_A Splicing factor, argini 48.9 10 0.00034 29.5 2.7 51 1-58 27-77 (108)
315 2q6q_A Spindle POLE BODY compo 48.9 74 0.0025 23.1 7.7 14 301-314 7-20 (74)
316 2xb1_A Pygopus homolog 2, B-ce 48.4 4.2 0.00014 32.4 0.3 32 94-126 3-36 (105)
317 1j1d_B Troponin T, TNT; THIN f 48.4 36 0.0012 27.1 5.8 26 340-365 67-92 (106)
318 1x4b_A Heterogeneous nuclear r 48.3 13 0.00044 29.1 3.3 54 1-56 39-93 (116)
319 2vpb_A Hpygo1, pygopus homolog 47.8 3.9 0.00013 29.6 0.0 35 92-126 6-41 (65)
320 3ask_A E3 ubiquitin-protein li 47.3 17 0.00057 33.0 4.2 10 62-71 126-135 (226)
321 2xzl_A ATP-dependent helicase 47.3 5.2 0.00018 43.3 0.9 77 144-220 10-99 (802)
322 1uw4_A UPF3X; nonsense mediate 47.1 12 0.00041 29.0 2.7 71 1-76 13-86 (91)
323 2l43_A N-teminal domain from h 47.0 19 0.00065 27.5 3.9 36 92-127 23-59 (88)
324 2ffw_A Midline-1; B-BOX, ring 46.9 6.6 0.00023 29.3 1.2 34 144-181 29-66 (78)
325 1x79_B RAB GTPase binding effe 46.9 1.1E+02 0.0038 24.5 12.0 15 351-365 71-85 (112)
326 1wg5_A Heterogeneous nuclear r 46.5 9.1 0.00031 29.6 2.0 56 1-57 27-82 (104)
327 2cqp_A RNA-binding protein 12; 46.5 13 0.00046 27.9 3.0 56 1-57 27-83 (98)
328 3beg_B Splicing factor, argini 46.4 11 0.00038 29.7 2.6 56 1-63 28-83 (115)
329 3lcn_C MRNA transport factor G 46.2 23 0.00077 21.0 3.1 17 259-275 9-25 (29)
330 1x5p_A Negative elongation fac 46.1 10 0.00035 28.7 2.2 51 1-57 25-75 (97)
331 1x4w_A Hypothetical protein FL 46.1 10 0.00035 27.7 2.0 25 144-169 14-43 (67)
332 2hgm_A HNRPF protein, heteroge 45.9 14 0.00047 30.2 3.1 53 1-56 54-108 (126)
333 2cqg_A TDP-43, TAR DNA-binding 45.9 19 0.00064 27.4 3.8 49 1-50 27-76 (103)
334 2adc_A Polypyrimidine tract-bi 45.4 15 0.00052 32.6 3.6 52 1-57 47-98 (229)
335 1wg2_A Zinc finger (AN1-like) 45.4 11 0.00038 27.2 2.1 24 145-169 15-40 (64)
336 2dnq_A RNA-binding protein 4B; 45.1 14 0.00047 27.5 2.8 49 1-57 20-68 (90)
337 2nlw_A Eukaryotic translation 44.6 10 0.00034 29.4 2.0 52 4-57 36-87 (105)
338 2ghp_A U4/U6 snRNA-associated 44.4 11 0.00037 34.7 2.5 58 1-58 129-186 (292)
339 1c1g_A Tropomyosin; contractIl 44.1 1.6E+02 0.0054 25.5 20.0 13 247-259 5-17 (284)
340 1qm9_A Polypyrimidine tract-bi 44.0 14 0.00049 31.6 3.2 53 1-57 132-184 (198)
341 1ytz_T Troponin T; muscle, THI 43.9 54 0.0019 26.1 6.2 25 341-365 68-92 (107)
342 1whx_A Hypothetical protein ri 43.9 12 0.0004 29.4 2.3 51 1-57 22-72 (111)
343 2dha_A FLJ20171 protein; RRM d 43.7 25 0.00085 28.4 4.4 55 1-56 35-92 (123)
344 3s4r_A Vimentin; alpha-helix, 43.6 1.1E+02 0.0037 23.5 10.8 18 264-281 27-44 (93)
345 1wle_A Seryl-tRNA synthetase; 43.6 1.5E+02 0.0052 30.0 11.1 24 344-367 124-147 (501)
346 1wfh_A Zinc finger (AN1-like) 43.2 13 0.00044 26.9 2.1 24 145-169 15-40 (64)
347 1f5n_A Interferon-induced guan 43.1 3E+02 0.01 28.4 19.0 17 38-54 45-61 (592)
348 3mq7_A Bone marrow stromal ant 42.8 1.3E+02 0.0045 24.2 13.2 13 255-267 24-36 (121)
349 2lv9_A Histone-lysine N-methyl 42.6 17 0.00057 28.4 3.0 33 93-127 27-59 (98)
350 2ct7_A Ring finger protein 31; 41.9 12 0.00039 28.5 1.9 33 96-128 27-61 (86)
351 1wev_A Riken cDNA 1110020M19; 41.8 10 0.00035 29.0 1.6 35 93-127 15-50 (88)
352 3v4m_A Splicing factor U2AF 65 41.7 12 0.00041 29.3 2.0 42 16-57 41-85 (105)
353 2lbm_A Transcriptional regulat 41.6 16 0.00056 30.6 3.0 31 93-127 62-92 (142)
354 2cpx_A Hypothetical protein FL 41.5 39 0.0013 26.0 5.2 52 1-56 37-92 (115)
355 2co8_A NEDD9 interacting prote 41.5 31 0.0011 25.4 4.3 42 91-141 12-53 (82)
356 1wfk_A Zinc finger, FYVE domai 41.5 21 0.00071 27.3 3.3 38 90-127 5-42 (88)
357 1wfp_A Zinc finger (AN1-like) 41.3 15 0.00052 27.3 2.3 24 145-169 25-50 (74)
358 2b9c_A Striated-muscle alpha t 41.1 1.6E+02 0.0054 24.6 12.8 18 265-282 43-60 (147)
359 1fj7_A Nucleolin RBD1, protein 40.9 20 0.0007 27.0 3.3 54 1-57 29-83 (101)
360 2cjk_A Nuclear polyadenylated 40.8 19 0.00065 29.6 3.3 55 1-57 99-154 (167)
361 6rxn_A Rubredoxin; electron tr 40.5 9.7 0.00033 25.6 1.1 10 96-105 6-15 (46)
362 3iv1_A Tumor susceptibility ge 40.4 1.1E+02 0.0039 22.8 11.7 14 311-324 25-38 (78)
363 2crw_A ARF GAP 3, ADP-ribosyla 40.3 5.9 0.0002 33.7 -0.0 36 142-177 26-61 (149)
364 2olm_A Nucleoporin-like protei 40.2 4.2 0.00014 34.2 -1.0 36 142-177 22-57 (140)
365 2iqj_A Stromal membrane-associ 40.2 4.3 0.00015 33.9 -0.9 36 142-177 24-59 (134)
366 2b9c_A Striated-muscle alpha t 40.2 1.6E+02 0.0056 24.5 15.0 19 349-367 100-118 (147)
367 2wt7_A Proto-oncogene protein 40.0 96 0.0033 21.9 7.2 16 351-366 45-60 (63)
368 1weu_A Inhibitor of growth fam 39.8 42 0.0015 25.8 4.9 40 93-138 35-84 (91)
369 2kvi_A Nuclear polyadenylated 39.7 23 0.00078 26.6 3.4 49 1-57 23-71 (96)
370 2ku3_A Bromodomain-containing 39.6 14 0.00048 27.1 2.0 36 92-127 14-50 (71)
371 2jmo_A Parkin; IBR, E3 ligase, 39.5 16 0.00053 27.4 2.3 20 115-134 55-74 (80)
372 1x8y_A Lamin A/C; structural p 39.5 1.2E+02 0.0041 22.8 8.9 19 265-283 8-26 (86)
373 3smz_A Protein raver-1, ribonu 39.4 23 0.00078 32.2 3.9 56 1-57 107-163 (284)
374 2cpd_A Apobec-1 stimulating pr 39.4 16 0.00055 27.6 2.5 50 1-57 27-77 (99)
375 1x68_A FHL5 protein; four-and- 39.3 31 0.0011 24.9 3.9 43 93-141 4-46 (76)
376 1qm9_A Polypyrimidine tract-bi 39.2 12 0.00042 32.0 1.9 52 1-57 16-67 (198)
377 1wen_A Inhibitor of growth fam 39.1 50 0.0017 24.0 5.0 41 92-138 14-64 (71)
378 2lcw_A RNA-binding protein FUS 45.3 6.4 0.00022 31.0 0.0 55 2-57 20-83 (116)
379 2d8x_A Protein pinch; LIM doma 39.0 22 0.00075 25.2 3.0 39 93-141 4-42 (70)
380 2jvo_A Nucleolar protein 3; nu 38.9 17 0.00058 28.3 2.6 48 1-56 43-90 (108)
381 3m62_A Ubiquitin conjugation f 38.9 12 0.00039 41.2 2.0 45 93-141 890-937 (968)
382 3iox_A AGI/II, PA; alpha helix 38.7 3.2E+02 0.011 27.5 16.5 8 272-279 14-21 (497)
383 1t2k_D Cyclic-AMP-dependent tr 38.2 1E+02 0.0034 21.5 6.9 14 351-364 44-57 (61)
384 1sjr_A Polypyrimidine tract-bi 38.1 42 0.0014 28.7 5.1 53 1-57 58-110 (164)
385 1zxa_A CGMP-dependent protein 38.1 59 0.002 23.6 5.1 28 339-366 28-55 (67)
386 2owa_A Arfgap-like finger doma 38.0 4.8 0.00017 33.8 -0.9 36 142-177 33-68 (138)
387 3ghg_C Fibrinogen gamma chain; 38.0 2.8E+02 0.0097 27.2 11.6 19 348-366 117-135 (411)
388 2wjy_A Regulator of nonsense t 37.8 8.3 0.00029 41.7 0.7 77 144-220 5-94 (800)
389 1nyp_A Pinch protein; LIM doma 37.6 21 0.00071 25.0 2.6 38 94-141 5-42 (66)
390 2xnq_A Nuclear polyadenylated 37.3 25 0.00084 26.7 3.2 49 1-57 35-83 (97)
391 2crr_A Stromal membrane-associ 37.1 5.7 0.00019 33.5 -0.6 36 142-177 26-61 (141)
392 2l08_A Regulator of nonsense t 37.1 16 0.00054 28.7 2.0 60 1-61 21-83 (97)
393 2p57_A GTPase-activating prote 37.1 5.1 0.00017 33.9 -0.9 36 142-177 34-69 (144)
394 1ses_A Seryl-tRNA synthetase; 37.0 1.4E+02 0.0046 29.5 9.4 15 349-363 84-98 (421)
395 2dar_A PDZ and LIM domain prot 36.9 27 0.00092 26.2 3.3 40 92-141 23-62 (90)
396 3t7l_A Zinc finger FYVE domain 36.7 33 0.0011 26.2 3.8 37 92-128 18-54 (90)
397 2csz_A Synaptotagmin-like prot 36.6 9.1 0.00031 28.7 0.5 15 92-106 23-37 (76)
398 4fla_A Regulation of nuclear P 36.6 1.9E+02 0.0065 24.3 12.3 13 350-362 131-143 (152)
399 3r27_A HnRNP L, heterogeneous 36.6 16 0.00053 28.7 1.9 49 2-56 34-82 (100)
400 3qwe_A GMIP, GEM-interacting p 36.5 2.6E+02 0.009 25.9 13.3 19 327-345 179-197 (279)
401 2cu8_A Cysteine-rich protein 2 36.5 28 0.00097 25.0 3.3 40 93-141 8-47 (76)
402 2e6s_A E3 ubiquitin-protein li 36.4 27 0.00091 26.0 3.1 31 96-127 28-58 (77)
403 2fxo_A Myosin heavy chain, car 36.3 1.7E+02 0.0058 23.6 18.1 53 315-367 66-121 (129)
404 1j1e_C Troponin I, TNI; THIN f 36.2 86 0.0029 27.3 6.7 24 341-364 84-107 (180)
405 1wf1_A RNA-binding protein RAL 36.1 19 0.00065 27.8 2.4 49 1-57 40-88 (110)
406 1ik9_A DNA repair protein XRCC 36.1 2.3E+02 0.0079 25.1 12.6 75 284-359 120-198 (213)
407 2lf0_A Uncharacterized protein 36.0 52 0.0018 26.5 4.9 19 297-315 10-28 (123)
408 1l3k_A Heterogeneous nuclear r 35.8 32 0.0011 29.0 4.1 54 1-56 25-79 (196)
409 3dwd_A ADP-ribosylation factor 35.8 6.8 0.00023 33.2 -0.4 36 142-177 35-70 (147)
410 1z60_A TFIIH basal transcripti 35.4 14 0.00047 26.3 1.3 41 95-136 16-58 (59)
411 3ue2_A Poly(U)-binding-splicin 35.4 20 0.0007 28.7 2.5 43 15-57 50-97 (118)
412 1wig_A KIAA1808 protein; LIM d 35.3 25 0.00086 25.3 2.8 39 93-141 4-42 (73)
413 3egn_A RNA-binding protein 40; 35.3 50 0.0017 26.6 5.1 55 1-57 57-118 (143)
414 2cor_A Pinch protein; LIM doma 35.3 40 0.0014 24.6 4.0 40 92-141 13-52 (79)
415 3cvf_A Homer-3, homer protein 35.1 1.4E+02 0.0048 22.3 9.2 9 347-355 56-64 (79)
416 2rs2_A Musashi-1, RNA-binding 35.1 17 0.0006 28.2 2.0 50 1-51 37-87 (109)
417 2l4z_A DNA endonuclease RBBP8, 35.1 43 0.0015 26.9 4.5 41 91-140 58-98 (123)
418 1wyh_A SLIM 2, skeletal muscle 35.1 30 0.001 24.5 3.2 41 93-141 4-44 (72)
419 1nu4_A U1A RNA binding domain; 35.0 6.6 0.00023 29.6 -0.5 53 2-57 21-77 (97)
420 3pgw_A U1-A; protein-RNA compl 35.0 33 0.0011 31.0 4.3 51 2-57 220-270 (282)
421 2d8z_A Four and A half LIM dom 34.9 37 0.0013 23.8 3.7 39 93-141 4-42 (70)
422 2adc_A Polypyrimidine tract-bi 34.8 20 0.00067 31.8 2.6 53 1-57 163-215 (229)
423 2e5j_A Methenyltetrahydrofolat 34.8 41 0.0014 25.2 4.1 52 1-57 31-82 (97)
424 3ask_A E3 ubiquitin-protein li 34.7 18 0.0006 32.9 2.2 13 115-127 194-206 (226)
425 2kgg_A Histone demethylase jar 34.5 21 0.00071 24.3 2.1 42 96-137 4-52 (52)
426 3s6e_A RNA-binding protein 39; 34.5 19 0.00067 28.7 2.2 39 16-57 43-81 (114)
427 1lwu_C Fibrinogen gamma chain; 34.5 1E+02 0.0035 29.4 7.7 56 300-366 1-56 (323)
428 1l3k_A Heterogeneous nuclear r 34.1 34 0.0011 28.8 3.9 54 1-56 116-170 (196)
429 1fjc_A Nucleolin RBD2, protein 33.9 18 0.00061 27.1 1.8 51 2-57 29-79 (96)
430 2cjk_A Nuclear polyadenylated 33.9 18 0.00061 29.8 2.0 55 1-56 15-73 (167)
431 2bz2_A Negative elongation fac 33.8 21 0.00073 28.5 2.4 51 1-57 49-99 (121)
432 4etp_A Kinesin-like protein KA 33.4 52 0.0018 32.4 5.6 8 355-362 50-57 (403)
433 4f02_A Polyadenylate-binding p 33.4 38 0.0013 29.5 4.2 56 1-57 27-83 (213)
434 2cur_A Skeletal muscle LIM-pro 33.3 27 0.00092 24.6 2.7 39 93-141 4-42 (69)
435 2cqh_A IGF-II mRNA-binding pro 33.2 18 0.0006 26.9 1.7 51 1-57 20-71 (93)
436 3i00_A HIP-I, huntingtin-inter 33.1 1.7E+02 0.0057 23.6 7.7 48 299-349 17-64 (120)
437 2xqn_T Testin, TESS; metal-bin 33.0 19 0.00064 28.9 1.9 39 94-141 3-41 (126)
438 1wd2_A Ariadne-1 protein homol 32.9 19 0.00065 25.5 1.7 36 94-129 6-45 (60)
439 2dj7_A Actin-binding LIM prote 32.7 44 0.0015 24.5 3.9 41 92-141 13-53 (80)
440 2p22_A Suppressor protein STP2 32.5 2.4E+02 0.0083 24.3 9.1 71 296-368 11-81 (174)
441 2jvr_A Nucleolar protein 3; RN 32.4 27 0.00093 27.6 2.8 54 1-57 40-93 (111)
442 3pgw_S U1-70K; protein-RNA com 32.4 37 0.0013 33.7 4.4 56 1-57 114-170 (437)
443 1gs9_A Apolipoprotein E, APOE4 32.2 2.3E+02 0.008 24.0 11.0 12 352-363 141-152 (165)
444 1wee_A PHD finger family prote 32.2 28 0.00097 25.2 2.6 35 92-127 14-48 (72)
445 2ke4_A CDC42-interacting prote 32.0 1.8E+02 0.0061 22.6 9.2 32 294-325 19-50 (98)
446 2ke4_A CDC42-interacting prote 31.9 1.8E+02 0.0061 22.6 10.0 16 268-283 16-31 (98)
447 1x61_A Thyroid receptor intera 31.8 43 0.0015 23.6 3.6 41 93-141 4-44 (72)
448 3u1c_A Tropomyosin alpha-1 cha 31.8 1.8E+02 0.0061 22.5 14.9 88 246-342 7-96 (101)
449 3sub_A ADP-ribosylation factor 31.8 7.3 0.00025 33.6 -0.8 35 143-177 20-54 (163)
450 1gk4_A Vimentin; intermediate 31.6 1.6E+02 0.0055 21.9 11.3 20 264-283 5-24 (84)
451 1x4l_A Skeletal muscle LIM-pro 31.4 47 0.0016 23.5 3.8 43 93-141 4-46 (72)
452 1wff_A Riken cDNA 2810002D23 p 31.4 27 0.00093 26.6 2.4 23 146-169 26-51 (85)
453 1x4k_A Skeletal muscle LIM-pro 31.3 33 0.0011 24.2 2.9 41 93-141 4-44 (72)
454 4h22_A Leucine-rich repeat fli 31.3 1.9E+02 0.0065 22.7 10.2 15 352-366 67-81 (103)
455 4ayb_P DNA-directed RNA polyme 31.2 26 0.00089 23.6 2.0 28 113-140 6-33 (48)
456 1x6a_A LIMK-2, LIM domain kina 31.2 28 0.00096 25.4 2.5 38 94-141 15-52 (81)
457 1wep_A PHF8; structural genomi 31.1 51 0.0017 24.3 4.0 47 93-140 11-64 (79)
458 1iuj_A Hypothetical protein TT 31.1 83 0.0028 23.6 5.4 34 19-52 37-70 (106)
459 3sde_A Paraspeckle component 1 30.6 25 0.00087 31.8 2.6 51 1-57 34-84 (261)
460 2g4b_A Splicing factor U2AF 65 30.4 52 0.0018 26.9 4.4 51 1-57 16-76 (172)
461 1wel_A RNA-binding protein 12; 30.0 32 0.0011 27.2 2.9 55 1-57 37-92 (124)
462 3shb_A E3 ubiquitin-protein li 29.8 28 0.00094 26.0 2.2 14 115-128 46-59 (77)
463 2dlo_A Thyroid receptor-intera 29.8 29 0.00098 25.4 2.4 39 93-141 14-52 (81)
464 3a7p_A Autophagy protein 16; c 29.6 2.5E+02 0.0086 23.6 12.3 28 297-324 103-130 (152)
465 2jtn_A LIM domain-binding prot 29.6 41 0.0014 28.9 3.7 42 91-141 57-98 (182)
466 4emc_A Monopolin complex subun 29.6 2.8E+02 0.0097 24.1 9.4 12 256-267 6-17 (190)
467 2hgn_A Heterogeneous nuclear r 29.6 16 0.00054 30.3 0.9 54 1-57 58-111 (139)
468 3etw_A Adhesin A; antiparallel 29.5 2.2E+02 0.0076 22.9 14.3 18 334-351 73-90 (119)
469 2ri7_A Nucleosome-remodeling f 29.5 13 0.00044 31.9 0.4 34 92-126 6-39 (174)
470 1fje_B Nucleolin RBD12, protei 29.5 41 0.0014 27.8 3.6 52 1-57 111-162 (175)
471 2b0o_E UPLC1; arfgap, structur 29.0 10 0.00036 35.3 -0.4 36 142-177 39-74 (301)
472 3ci9_A Heat shock factor-bindi 28.9 1.1E+02 0.0039 20.5 5.0 6 351-356 39-44 (48)
473 1g47_A Pinch protein; LIM doma 28.9 42 0.0014 24.0 3.1 41 93-141 10-50 (77)
474 2ysm_A Myeloid/lymphoid or mix 28.9 28 0.00095 27.5 2.3 31 96-127 56-86 (111)
475 3u59_A Tropomyosin beta chain; 28.7 2E+02 0.0069 22.1 14.9 88 246-342 7-96 (101)
476 1x63_A Skeletal muscle LIM-pro 28.6 42 0.0015 24.4 3.2 40 94-141 15-54 (82)
477 2p2u_A HOST-nuclease inhibitor 28.4 2.8E+02 0.0094 23.6 9.3 54 329-386 38-93 (171)
478 1uii_A Geminin; human, DNA rep 28.2 1.9E+02 0.0066 21.8 8.5 27 298-324 47-73 (83)
479 2j69_A Bacterial dynamin-like 28.2 4.5E+02 0.015 27.4 12.2 90 246-339 601-690 (695)
480 3uux_B Mitochondrial division 28.0 3.4E+02 0.012 24.6 11.8 11 194-204 27-37 (242)
481 1wem_A Death associated transc 28.0 43 0.0015 24.4 3.1 47 93-141 15-72 (76)
482 1tu3_F RAB GTPase binding effe 27.8 76 0.0026 23.4 4.2 35 302-336 17-51 (79)
483 2voo_A Lupus LA protein; RNA-b 27.6 39 0.0013 29.3 3.2 50 2-52 122-171 (193)
484 3asl_A E3 ubiquitin-protein li 27.6 36 0.0012 24.7 2.5 13 115-127 38-50 (70)
485 2jne_A Hypothetical protein YF 27.6 13 0.00043 29.2 -0.0 40 94-141 32-72 (101)
486 2aze_A Transcription factor DP 27.5 2.2E+02 0.0074 24.1 7.6 32 343-374 19-50 (155)
487 3efg_A Protein SLYX homolog; x 27.2 1.9E+02 0.0065 21.4 6.9 7 318-324 32-38 (78)
488 2akl_A PHNA-like protein PA012 27.1 22 0.00075 29.4 1.3 12 155-166 42-53 (138)
489 2cuq_A Four and A half LIM dom 27.0 42 0.0014 24.3 2.8 37 94-140 15-51 (80)
490 2efr_A General control protein 26.9 2.9E+02 0.0098 23.3 16.6 15 297-311 77-91 (155)
491 2e5g_A U6 snRNA-specific termi 26.9 53 0.0018 24.3 3.5 51 1-57 20-70 (94)
492 3n7n_E Monopolin complex subun 26.9 44 0.0015 25.8 2.9 80 262-346 13-92 (95)
493 1joc_A EEA1, early endosomal a 26.9 33 0.0011 27.9 2.4 38 90-127 65-102 (125)
494 1v6g_A Actin binding LIM prote 26.8 35 0.0012 24.9 2.4 37 95-141 16-52 (81)
495 3lay_A Zinc resistance-associa 26.8 3E+02 0.01 23.6 10.1 70 266-344 70-143 (175)
496 1dvp_A HRS, hepatocyte growth 26.7 39 0.0013 30.1 3.1 36 127-173 157-193 (220)
497 4emc_A Monopolin complex subun 26.7 3.2E+02 0.011 23.8 10.0 77 256-338 6-82 (190)
498 2d8y_A Eplin protein; LIM doma 26.6 89 0.0031 23.2 4.8 53 76-141 1-53 (91)
499 4fi5_A Nucleoprotein; structur 26.6 2.4E+02 0.0083 22.4 9.4 84 276-385 24-108 (113)
500 1a7i_A QCRP2 (LIM1); LIM domai 26.4 12 0.0004 27.6 -0.4 68 88-164 1-74 (81)
No 1
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=99.73 E-value=4.1e-19 Score=150.70 Aligned_cols=84 Identities=29% Similarity=0.518 Sum_probs=67.9
Q ss_pred hccccccCCCCCCcccccC----------CCCccceeecccCCCcccccccCccccccCC------ccccccccccCCce
Q 015431 123 SCISKWTDSSCPVCRYCQQ----------QPEKSICFVCQTSENLWMCVICGFVGCGRYK------GGHAIIHWKETEHC 186 (407)
Q Consensus 123 ~Cl~~w~~~~CP~Cr~~~~----------~~~~~~C~~C~~~~~l~~Cl~Cg~~~Cgr~~------~~Ha~~H~~~t~H~ 186 (407)
.|+..|.+..||+|++... ++....|..|+...++|+||+||++||||+. ++||..||.+++|+
T Consensus 2 ~~~~~W~~e~~~~C~h~~~l~q~~~~~~~~~~~~~C~~C~~~~~LwlCL~CG~vgCgr~~~~g~g~~~HA~~H~~~t~H~ 81 (129)
T 2g45_A 2 QEVQAWDGEVRQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYP 81 (129)
T ss_dssp ---------CCEECTTTTTCCCCSSCCCCCCCBCCCSSSSCCSSEEEETTTCCEEECCBCTTSCBCCSHHHHHHHHHCCC
T ss_pred hHHHhhcCCCCCCCCCcCcccccccccccCCCCCcCccccCcCceEEeccCCccccCccccCCCCcCcHHHHHhhhcCCC
Confidence 6889999888999988742 2345689999999999999999999999997 89999999999999
Q ss_pred eEeecCc-----eeEEeccCCcchh
Q 015431 187 YSLELET-----QRVWDYAGDNYVH 206 (407)
Q Consensus 187 ~~~~l~~-----~~v~cy~cd~~vh 206 (407)
+++.+.+ ++||||.||+||+
T Consensus 82 l~v~l~t~~~~~~~vwcY~cd~~V~ 106 (129)
T 2g45_A 82 LAVKLGTITPDGADVYSYDEDDMVL 106 (129)
T ss_dssp EEEETTCCBTTBCCEEETTTTEEEE
T ss_pred EEEECCCCCCCCCeEEECCCCCEeE
Confidence 9999998 6999999999995
No 2
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=99.70 E-value=6.5e-19 Score=149.21 Aligned_cols=105 Identities=27% Similarity=0.537 Sum_probs=82.7
Q ss_pred eeecCCCccchhcccccc-------CCCCCCcccccCCCCccceeecccCCCcccccccCccccccC-Ccccccccccc-
Q 015431 112 LTTICNHSFHCSCISKWT-------DSSCPVCRYCQQQPEKSICFVCQTSENLWMCVICGFVGCGRY-KGGHAIIHWKE- 182 (407)
Q Consensus 112 ~~~~C~H~F~~~Cl~~w~-------~~~CP~Cr~~~~~~~~~~C~~C~~~~~l~~Cl~Cg~~~Cgr~-~~~Ha~~H~~~- 182 (407)
+...|.|.++..++..|. ...|+.|+..-. ....++..|....++|+||+||++||||+ .++||..||.+
T Consensus 3 ~~~~C~H~~~~~~l~~~~~~~~~~~~~~C~~C~~~~~-~~~~~~~~~~~~~~Lw~CL~CG~vgCgr~~~~~Ha~~H~~~~ 81 (126)
T 2i50_A 3 HMPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNK-VKDKAEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLTP 81 (126)
T ss_dssp --CCCSCHHHHCCHHHHHHHHSSCCSSSCHHHHTCTT-SSCSSCTTTCCCCCEEEETTTCCEEECTTSSSCHHHHHHHSC
T ss_pred CCCCCcChhhccccccccccccCCCCCcCcccccccc-ccccccccccccccceeeeeCCccccCCCCcchHHHHHHhCc
Confidence 467899999988876653 256999987532 33345668888999999999999999998 57999999999
Q ss_pred --CCceeEeecCceeEEeccCCcchhhhhhhcccCcee
Q 015431 183 --TEHCYSLELETQRVWDYAGDNYVHRLIQSKTDGKLV 218 (407)
Q Consensus 183 --t~H~~~~~l~~~~v~cy~cd~~vhrl~~~~~dgkl~ 218 (407)
++|++++.+++.+||||.||+||+ ....+.++++|
T Consensus 82 ~~t~H~l~~~l~t~~vwCY~cd~~V~-~~~~~~l~~~v 118 (126)
T 2i50_A 82 RSEPHCLVLSLDNWSVWCYVCDNEVQ-YCSSNQLGQVV 118 (126)
T ss_dssp CSSCCCEEEETTTCCEEETTTTEEEC-CCTTSHHHHHH
T ss_pred CCCCCcEEEECCCCeEEeCCCCcEEE-cCcchhHHHHH
Confidence 899999999999999999999997 33333333333
No 3
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=99.65 E-value=3.8e-17 Score=134.83 Aligned_cols=63 Identities=33% Similarity=0.665 Sum_probs=60.9
Q ss_pred ccceeecccCCCcccccccCccccccCCccccccccccCCceeEeecCceeEEeccCCcchhh
Q 015431 145 KSICFVCQTSENLWMCVICGFVGCGRYKGGHAIIHWKETEHCYSLELETQRVWDYAGDNYVHR 207 (407)
Q Consensus 145 ~~~C~~C~~~~~l~~Cl~Cg~~~Cgr~~~~Ha~~H~~~t~H~~~~~l~~~~v~cy~cd~~vhr 207 (407)
...|..|+...++|+||+||++||||+.++||..||.+++|++++.++++++|||.||.||++
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCgr~~~~HA~~H~~~t~H~~~~~l~~~~vwCy~cd~~V~~ 86 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYIDLSAWCYYCQAYVHH 86 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEECTTTTCHHHHHHHHHCCCEEEETTTCCEEETTTTEEBCC
T ss_pred CCcCccccCCCCeeeeeecCccccCCCcChHHHHHhcccCCCEEEECCCCCEEECCCCCEEec
Confidence 567999999999999999999999999999999999999999999999999999999999986
No 4
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=99.58 E-value=3.6e-16 Score=126.54 Aligned_cols=62 Identities=40% Similarity=0.841 Sum_probs=58.4
Q ss_pred Cccceeecc-cCCCcccccc--cCccccccCCccccccccccCCceeEeecCceeEEeccCCcch
Q 015431 144 EKSICFVCQ-TSENLWMCVI--CGFVGCGRYKGGHAIIHWKETEHCYSLELETQRVWDYAGDNYV 205 (407)
Q Consensus 144 ~~~~C~~C~-~~~~l~~Cl~--Cg~~~Cgr~~~~Ha~~H~~~t~H~~~~~l~~~~v~cy~cd~~v 205 (407)
....|..|+ ..+++|+||+ ||++||||+..+||..||.+++|++++.+++++||||.||+||
T Consensus 24 ~~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr~~~~Ha~~H~~~t~H~~~~~l~~~~vwCy~cdd~V 88 (97)
T 2uzg_A 24 SLGTCQDCKVQGPNLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCYACSKEV 88 (97)
T ss_dssp TTTCCSSSCCCCSSCEEECCTTCCCEECCTTTTCHHHHHHHHTTCCEEEETTTTEEEETTTTEEE
T ss_pred CCCcCcCcCCCCCCceeeecccCCCcccCCCcChHHHHHhhhcCCcEEEECCCCCEEECCCCcEe
Confidence 356799998 6779999999 9999999999999999999999999999999999999999997
No 5
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=99.56 E-value=8.8e-16 Score=124.36 Aligned_cols=65 Identities=26% Similarity=0.455 Sum_probs=58.0
Q ss_pred CCccceeecccCC----CcccccccCccccccC-CccccccccccCCceeEeecC--ceeEEeccCCcchhh
Q 015431 143 PEKSICFVCQTSE----NLWMCVICGFVGCGRY-KGGHAIIHWKETEHCYSLELE--TQRVWDYAGDNYVHR 207 (407)
Q Consensus 143 ~~~~~C~~C~~~~----~l~~Cl~Cg~~~Cgr~-~~~Ha~~H~~~t~H~~~~~l~--~~~v~cy~cd~~vhr 207 (407)
+....|..|+..+ +||+||+||++||+|+ .++||..||.+++|++++.++ +.++|||.||+||+.
T Consensus 16 p~~~~C~~C~~~~~~Wv~LwlCL~CG~VGC~r~s~~~HA~~H~~~t~Hpl~~S~~~~~~~vwcY~cd~~V~~ 87 (102)
T 2ida_A 16 PSALGCEECLKIGSPWVHLRICRTCGHVGCCDDSPHKHATRHFHATGHPIIEGYDPPEGWGWCYVDEVMFDL 87 (102)
T ss_dssp CSSSSCHHHHTTTCCCSCBEEESSSCCCCBCTTSTTCHHHHHHHHHCCCEEEESSSCSCEEEETTTTEEEEC
T ss_pred CCCCcCccccccCCcchheeeeeEcCCCcccCCCccHHHHHHHhccCCCEEEEEecCCCCEEEcCCCcEEEC
Confidence 4467899998876 8999999999999998 899999999999999776665 689999999999954
No 6
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.52 E-value=7.1e-16 Score=168.99 Aligned_cols=93 Identities=26% Similarity=0.454 Sum_probs=68.8
Q ss_pred eecCCCccchhccccccCCCCCCcccccC----------CCCccceeecccCCCcccccccCccccccCC------cccc
Q 015431 113 TTICNHSFHCSCISKWTDSSCPVCRYCQQ----------QPEKSICFVCQTSENLWMCVICGFVGCGRYK------GGHA 176 (407)
Q Consensus 113 ~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~----------~~~~~~C~~C~~~~~l~~Cl~Cg~~~Cgr~~------~~Ha 176 (407)
++.+.+.++..|+..|.+..||+|++... ++....|..|+...++|+||+||++||||+. ++||
T Consensus 173 i~~~~~~~~~~~~~~w~~~~~~~c~h~~~~~~~~~~~~~~~~~~~C~~c~~~~~lw~CL~Cg~vgC~r~~~~~~~~~~ha 252 (854)
T 3ihp_A 173 LLSADSASRKQEVQAWDGEVRQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHA 252 (854)
T ss_dssp HTC----------------CCCBCTTTTTCCCCSSCCCCCSSCCCCSSSCCCSSEEEETTTCCEEECCBC-CCCBCCSHH
T ss_pred HHhcCCHHHHHHHHhhcCccCCCCcCccccccccccccCCCCCCcCcCcCCcCceEEEecCCCccccccccCCCCCchHH
Confidence 34678899999999999888999999742 1334689999999999999999999999986 7899
Q ss_pred ccccccCCceeEeecCc-----eeEEeccCCcch
Q 015431 177 IIHWKETEHCYSLELET-----QRVWDYAGDNYV 205 (407)
Q Consensus 177 ~~H~~~t~H~~~~~l~~-----~~v~cy~cd~~v 205 (407)
..||.+++|++++.+.+ .+||||.||.+|
T Consensus 253 ~~H~~~~~H~~~~~l~t~~~~~~~~~cy~~~~~v 286 (854)
T 3ihp_A 253 VEHYRETGYPLAVKLGTITPDGADVYSYDEDDMV 286 (854)
T ss_dssp HHHHHHHCCCEEEETTCCBTTBCCEEETTTTEEC
T ss_pred HHHHhhcCCcEEEEcCCcCCCCCeEEEccCCCee
Confidence 99999999999999999 999999999999
No 7
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=3.5e-10 Score=85.93 Aligned_cols=49 Identities=31% Similarity=0.769 Sum_probs=42.7
Q ss_pred CCCCCCCcccccccccccCCCceeeecCCCccchhccccccC-----CCCCCcccccC
Q 015431 89 ASSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD-----SSCPVCRYCQQ 141 (407)
Q Consensus 89 ~~~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~-----~~CP~Cr~~~~ 141 (407)
..+.+...||||++.+.+ |++++|+|.||..|+..|.. ..||+||..+.
T Consensus 15 ~~~~~~~~C~IC~~~~~~----~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQK----PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCCCBCTTTCSBCSS----EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred HhCccCCEeccCCcccCC----eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 345678999999999987 88889999999999999974 48999999875
No 8
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.98 E-value=7.5e-11 Score=99.76 Aligned_cols=81 Identities=26% Similarity=0.616 Sum_probs=57.2
Q ss_pred CCCCcccccccccccC---CCceeeecCCCccchhccccccC--CCCCCcccccCC---------CCccceeecccCC--
Q 015431 92 TEQPSCPVCLERLDQD---TSGILTTICNHSFHCSCISKWTD--SSCPVCRYCQQQ---------PEKSICFVCQTSE-- 155 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~---~~~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~~---------~~~~~C~~C~~~~-- 155 (407)
.+..+||||++.|.+. ...+++++|||+||..||..|.. ..||+||..+.. .....|..|...-
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~~~~~~C~iC~~~~~~ 84 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIGSGTVSCPICMDGYSE 84 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCSSSSCBCTTTCCBHHH
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccccccCCCCCCCCCCCCcccc
Confidence 3678999999999862 22348999999999999999964 789999998762 2345666664321
Q ss_pred -----CcccccccCccccccCC
Q 015431 156 -----NLWMCVICGFVGCGRYK 172 (407)
Q Consensus 156 -----~l~~Cl~Cg~~~Cgr~~ 172 (407)
...+.+.||++.|..+.
T Consensus 85 ~~~~~~~~~~~~CgH~fc~~Ci 106 (133)
T 4ap4_A 85 IVQNGRLIVSTECGHVFCSQCL 106 (133)
T ss_dssp HHHTTCCEEEETTSBEEEHHHH
T ss_pred ccccCcceEeCCCCChhhHHHH
Confidence 12245566666665443
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.98 E-value=1.7e-10 Score=82.72 Aligned_cols=49 Identities=24% Similarity=0.617 Sum_probs=42.4
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhccccccC--CCCCCcccccC
Q 015431 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
+...|+||++.|..+...++.++|+|.||..|+..|.. ..||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 56889999999976556688999999999999999964 78999998763
No 10
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=3.6e-10 Score=85.68 Aligned_cols=48 Identities=25% Similarity=0.574 Sum_probs=42.1
Q ss_pred CCCCCCcccccccccccCCCceeeecCCCccchhccccccC--CCCCCcccccC
Q 015431 90 SSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 90 ~~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
...+...|+||++.+.. ++.++|+|.||..|+..|.. ..||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~----~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVH----PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSSSCCBCSSSSSBCSS----EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred cCCCCCCCccCCcccCC----CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 34577899999999987 88899999999999999965 78999999875
No 11
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.95 E-value=3.6e-10 Score=81.02 Aligned_cols=48 Identities=33% Similarity=0.877 Sum_probs=39.7
Q ss_pred CCCCcccccccccccCCCceeeec-CCCccchhccccccC--CCCCCccccc
Q 015431 92 TEQPSCPVCLERLDQDTSGILTTI-CNHSFHCSCISKWTD--SSCPVCRYCQ 140 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~-C~H~F~~~Cl~~w~~--~~CP~Cr~~~ 140 (407)
.+...|+||++.|..+. .+..++ |+|.||..|+..|.. ..||+||..+
T Consensus 3 ~~~~~C~IC~~~~~~~~-~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 3 DDGVECAVCLAELEDGE-EARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CCSCCCTTTCCCCCTTS-CCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCCCcCccCCccccCCC-ceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 46789999999998543 355665 999999999999965 7899999865
No 12
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.94 E-value=4e-10 Score=86.20 Aligned_cols=50 Identities=18% Similarity=0.482 Sum_probs=42.9
Q ss_pred CCCCCCCCcccccccccccCCCceeeec-CCCccchhccccccC----CCCCCcccccC
Q 015431 88 PASSTEQPSCPVCLERLDQDTSGILTTI-CNHSFHCSCISKWTD----SSCPVCRYCQQ 141 (407)
Q Consensus 88 ~~~~~e~~~C~iCle~~~~~~~~~~~~~-C~H~F~~~Cl~~w~~----~~CP~Cr~~~~ 141 (407)
...+.+...||||++.|.+ |++++ |+|+||..||..|.. ..||+||..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTD----AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTT----CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred cccCCCCCCCcCCChHHhC----CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 3445688999999999997 88899 999999999999964 58999999754
No 13
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.94 E-value=1.8e-10 Score=99.00 Aligned_cols=45 Identities=33% Similarity=0.808 Sum_probs=40.4
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhccccccC--CCCCCcccccC
Q 015431 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
+..+||||++.|.+ |++++|||+||..||..|.. ..||+||..+.
T Consensus 52 ~~~~C~iC~~~~~~----~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 52 NELQCIICSEYFIE----AVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp HHSBCTTTCSBCSS----EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred ccCCCcccCcccCC----ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45789999999987 88999999999999999975 78999999764
No 14
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=3.4e-10 Score=84.79 Aligned_cols=53 Identities=26% Similarity=0.649 Sum_probs=43.1
Q ss_pred CCCCCCCcccccccccccC---CCceeeecCCCccchhccccccC--CCCCCcccccC
Q 015431 89 ASSTEQPSCPVCLERLDQD---TSGILTTICNHSFHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 89 ~~~~e~~~C~iCle~~~~~---~~~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
....+...|+||++.|... ...+++++|+|.||..||..|.. ..||+||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 3456789999999999862 22347899999999999999964 78999998764
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=4.8e-10 Score=85.20 Aligned_cols=50 Identities=28% Similarity=0.493 Sum_probs=42.8
Q ss_pred CCCCCCCCcccccccccccCCCceeee-cCCCccchhccccccC--CCCCCcccccC
Q 015431 88 PASSTEQPSCPVCLERLDQDTSGILTT-ICNHSFHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 88 ~~~~~e~~~C~iCle~~~~~~~~~~~~-~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
...+.+...|+||++.|.+ |+++ +|+|+||..||..|.. ..||+||..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (72)
T 2djb_A 9 LSELTPYILCSICKGYLID----ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVH 61 (72)
T ss_dssp CCCCCGGGSCTTTSSCCSS----CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCC
T ss_pred HhhcCCCCCCCCCChHHHC----cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccC
Confidence 3445678999999999987 6665 9999999999999974 78999999875
No 16
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.91 E-value=1.2e-09 Score=84.24 Aligned_cols=51 Identities=39% Similarity=0.812 Sum_probs=42.2
Q ss_pred CCCCCCcccccccccccCCCceeeecCCCccchhccccccC--CCCCCcccccC
Q 015431 90 SSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 90 ~~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
...+...|+||++.|... ..+..++|+|.||..||..|.. ..||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~-~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 63 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALG-ESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT 63 (78)
T ss_dssp TSSSSCCCTTTTSCCCTT-SCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred cCCCCCCCeeCCccccCC-CCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccC
Confidence 345778999999999853 2356789999999999999964 78999999876
No 17
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.91 E-value=5.5e-10 Score=87.04 Aligned_cols=50 Identities=38% Similarity=0.762 Sum_probs=42.7
Q ss_pred CCCCCCCCcccccccccccCCCceeeecCCCccchhcccccc--------CCCCCCcccccC
Q 015431 88 PASSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWT--------DSSCPVCRYCQQ 141 (407)
Q Consensus 88 ~~~~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~--------~~~CP~Cr~~~~ 141 (407)
...+.+...|+||++.+.. |++++|+|+||..|+..|. ...||+||..+.
T Consensus 13 ~~~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLKE----PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CCCCCTTTSCTTTCSCCSS----CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred HHhCccCCCCcCCChhhCc----ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 3445688999999999987 7889999999999999984 357999999875
No 18
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=4.8e-10 Score=85.84 Aligned_cols=51 Identities=33% Similarity=0.832 Sum_probs=42.3
Q ss_pred CCCCCcccccccccccCCCceeeecCCCccchhccccccC--CCCCCcccccCC
Q 015431 91 STEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD--SSCPVCRYCQQQ 142 (407)
Q Consensus 91 ~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~~ 142 (407)
..+...|+||++.|... ..+..++|+|.||..||..|.. ..||+||..+.+
T Consensus 20 ~~~~~~C~IC~~~~~~~-~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESR-QLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBT-CEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCC-CeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 34678999999999853 3457889999999999999964 889999998753
No 19
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.91 E-value=5.5e-10 Score=86.10 Aligned_cols=49 Identities=39% Similarity=0.789 Sum_probs=42.1
Q ss_pred CCCCCCCcccccccccccCCCceeeecCCCccchhccccccC---------CCCCCcccccC
Q 015431 89 ASSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD---------SSCPVCRYCQQ 141 (407)
Q Consensus 89 ~~~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~---------~~CP~Cr~~~~ 141 (407)
..+.+..+||||++.|.+ |++++|+|+||..|+..|.. ..||+||..+.
T Consensus 7 ~~~~~~~~C~IC~~~~~~----p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTE----PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCCCCEETTTTEECSS----CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred hhcccCCCCcCCCcccCC----eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 345678999999999987 77889999999999999963 47999999875
No 20
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=9.1e-10 Score=85.86 Aligned_cols=50 Identities=30% Similarity=0.743 Sum_probs=38.9
Q ss_pred CCCCccccccccccc----------CCCce-eeecCCCccchhccccccC--CCCCCcccccC
Q 015431 92 TEQPSCPVCLERLDQ----------DTSGI-LTTICNHSFHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 92 ~e~~~C~iCle~~~~----------~~~~~-~~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
.+..+|+||++.|.+ ....+ .+++|+|.||..||.+|.. .+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 467889999988864 22223 4456999999999999964 78999999764
No 21
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=98.89 E-value=2.6e-10 Score=117.03 Aligned_cols=59 Identities=24% Similarity=0.618 Sum_probs=55.3
Q ss_pred cceeecccC--CCcccccccCccccccCCccccccccccCCceeEeecCceeEEeccCCcchh
Q 015431 146 SICFVCQTS--ENLWMCVICGFVGCGRYKGGHAIIHWKETEHCYSLELETQRVWDYAGDNYVH 206 (407)
Q Consensus 146 ~~C~~C~~~--~~l~~Cl~Cg~~~Cgr~~~~Ha~~H~~~t~H~~~~~l~~~~v~cy~cd~~vh 206 (407)
..|..|... .++|+||+||++|||+ ++|+..|+.+++|++++.++++++|||.|+++|.
T Consensus 49 ~~C~~c~~~~~~~~~~cl~cg~~~c~~--~~h~~~H~~~~~h~~~~~~~~~~~~c~~~~~~v~ 109 (476)
T 3mhs_A 49 MKCGTCHEINSGATFMCLQCGFCGCWN--HSHFLSHSKQIGHIFGINSNNGLLFCFKCEDYIG 109 (476)
T ss_dssp SBCTTTCCBCSSSEEEESSSSCEEETT--TTHHHHHHHHHCCCEEEETTTCCEEETTTTEEEC
T ss_pred CCcccccCCCCCCceEeCCCCCCccCC--chHHHHHhcccCCcEEEECCCCcEEeCCCCCCcc
Confidence 469999876 7999999999999997 8999999999999999999999999999999994
No 22
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=8.2e-10 Score=86.84 Aligned_cols=53 Identities=23% Similarity=0.581 Sum_probs=45.0
Q ss_pred CCCCCCCcccccccccccCCCceeeecCCCccchhccccccC-----CCCCCcccccC
Q 015431 89 ASSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD-----SSCPVCRYCQQ 141 (407)
Q Consensus 89 ~~~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~-----~~CP~Cr~~~~ 141 (407)
..+.+...|+||++.|......|++++|+|.||..|+..|.. ..||+||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 445688999999999986555588999999999999999953 68999999775
No 23
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=1e-09 Score=83.67 Aligned_cols=51 Identities=29% Similarity=0.731 Sum_probs=42.1
Q ss_pred CCCCCCcccccccccccCCCceeeecCCCccchhccccccC--CCCCCcccccC
Q 015431 90 SSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 90 ~~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
...+...|+||++.|... .....++|+|.||..||..|.. ..||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~-~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPR-DELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63 (74)
T ss_dssp CCCCSCBCSSSCCBCCSS-SCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred cCCCCCCCcCCCcccCCC-CcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccc
Confidence 445778999999999753 2355679999999999999964 78999999875
No 24
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.89 E-value=8.5e-10 Score=82.95 Aligned_cols=50 Identities=28% Similarity=0.776 Sum_probs=41.8
Q ss_pred CCCCCcccccccccccCCCceeeecCCCccchhccccccC--CCCCCcccccC
Q 015431 91 STEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 91 ~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
..+...|+||++.|.. ...++.++|+|.||..||..|.. ..||+||..+.
T Consensus 11 ~~~~~~C~IC~~~~~~-~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 11 EDTEEKCTICLSILEE-GEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp TTCCCSBTTTTBCCCS-SSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred CCCCCCCeeCCccccC-CCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 3467899999999973 33477899999999999999964 78999999875
No 25
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.88 E-value=5.2e-10 Score=89.16 Aligned_cols=49 Identities=31% Similarity=0.781 Sum_probs=41.6
Q ss_pred CCCCcccccccccccCCCceeeecCCCccchhccccccC--CCCCCcccccC
Q 015431 92 TEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
.+...|+||++.|..+ ..+..++|+|.||..||..|.. ..||+||..+.
T Consensus 38 ~~~~~C~IC~~~~~~~-~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKG-DVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECCTT-CEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCCCCCcccChhhcCC-CcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 4678999999999743 3567889999999999999964 78999999875
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.88 E-value=7.2e-10 Score=85.43 Aligned_cols=47 Identities=26% Similarity=0.506 Sum_probs=41.8
Q ss_pred CCCCCcccccccccccCCCceeeecCCCccchhccccccC---CCCCCcccccC
Q 015431 91 STEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD---SSCPVCRYCQQ 141 (407)
Q Consensus 91 ~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~---~~CP~Cr~~~~ 141 (407)
..+...||||++.|.+ |++++|||+||..||..|.. ..||+||..+.
T Consensus 5 ~~~~~~C~IC~~~~~~----Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 5 FPEYFRCPISLELMKD----PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp CSSSSSCTTTSCCCSS----EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred CcccCCCCCccccccC----CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 4578999999999987 89999999999999999964 67999999875
No 27
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=1.1e-09 Score=85.29 Aligned_cols=49 Identities=45% Similarity=0.890 Sum_probs=42.4
Q ss_pred CCCCCCCcccccccccccCCCceeeecCCCccchhcccccc--------CCCCCCcccccC
Q 015431 89 ASSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWT--------DSSCPVCRYCQQ 141 (407)
Q Consensus 89 ~~~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~--------~~~CP~Cr~~~~ 141 (407)
..+.+...|+||++.+.+ |++++|+|.||..|+..|. ...||+||..+.
T Consensus 14 ~~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQ----PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCCCCTTTCSCCSS----CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred HHccCCCCCCCCCcccCC----ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 445678999999999987 7788999999999999984 368999999875
No 28
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=7.5e-10 Score=81.78 Aligned_cols=44 Identities=34% Similarity=0.850 Sum_probs=38.3
Q ss_pred CCCCCCCcccccccccccCCCceeeecCCCccchhccccccC-----CCCCCc
Q 015431 89 ASSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD-----SSCPVC 136 (407)
Q Consensus 89 ~~~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~-----~~CP~C 136 (407)
..+.+...||||++.|.+ |++++|+|+||..||..|.. ..||+|
T Consensus 15 ~~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQK----PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSS----CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCC----eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 345688999999999987 88889999999999999963 479988
No 29
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=9.6e-10 Score=85.44 Aligned_cols=47 Identities=21% Similarity=0.441 Sum_probs=41.5
Q ss_pred CCCCCcccccccccccCCCceeeecCCCccchhccccccC--CCCCCcccccC
Q 015431 91 STEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 91 ~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
..+...|+||++.|.. |++++|+|+||..|+..|.. ..||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQN----PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCS----EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcC----eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4567899999999987 88899999999999999964 78999999764
No 30
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.86 E-value=3.9e-10 Score=85.11 Aligned_cols=51 Identities=27% Similarity=0.683 Sum_probs=42.1
Q ss_pred CCCCCcccccccccccC---CCceeeecCCCccchhccccccC--CCCCCcccccC
Q 015431 91 STEQPSCPVCLERLDQD---TSGILTTICNHSFHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 91 ~~e~~~C~iCle~~~~~---~~~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
..+...|+||++.+... ...++.++|+|.||..|+..|.. ..||+||..+.
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 62 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccC
Confidence 34678999999999762 22347899999999999999964 79999999875
No 31
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.85 E-value=6.9e-10 Score=88.32 Aligned_cols=47 Identities=19% Similarity=0.530 Sum_probs=41.6
Q ss_pred CCCCCCcccccccccccCCCceeeec-CCCccchhccccccC----CCCCCccccc
Q 015431 90 SSTEQPSCPVCLERLDQDTSGILTTI-CNHSFHCSCISKWTD----SSCPVCRYCQ 140 (407)
Q Consensus 90 ~~~e~~~C~iCle~~~~~~~~~~~~~-C~H~F~~~Cl~~w~~----~~CP~Cr~~~ 140 (407)
.+.+..+||||++.|.+ |++++ |||+||..||..|.. ..||+||..+
T Consensus 9 ~~~~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTD----AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCCTTTEETTTTEECSS----CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCcCCCCCCCChhhcC----ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 45678999999999997 88999 999999999999963 5899999976
No 32
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1.4e-09 Score=78.58 Aligned_cols=44 Identities=41% Similarity=0.944 Sum_probs=37.6
Q ss_pred CCCCCCCcccccccccccCCCceeeecCCCccchhcccccc-----CCCCCCc
Q 015431 89 ASSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWT-----DSSCPVC 136 (407)
Q Consensus 89 ~~~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~-----~~~CP~C 136 (407)
..+.+...|+||++.+.+ |++++|+|.||..||..|. ...||+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKE----PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCBCSS----CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hccccCCCCccCCcccCc----cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 345578899999999987 7788999999999999993 3689988
No 33
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.83 E-value=1.1e-09 Score=81.48 Aligned_cols=49 Identities=20% Similarity=0.634 Sum_probs=40.2
Q ss_pred CCCccccccc-ccccCCCceeeecCCCccchhcccccc---CCCCCCcccccC
Q 015431 93 EQPSCPVCLE-RLDQDTSGILTTICNHSFHCSCISKWT---DSSCPVCRYCQQ 141 (407)
Q Consensus 93 e~~~C~iCle-~~~~~~~~~~~~~C~H~F~~~Cl~~w~---~~~CP~Cr~~~~ 141 (407)
+..+||||++ .+......+++++|||+||..|+..|. ...||+||..+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 4678999999 887644334678999999999999993 367999999875
No 34
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=1.1e-09 Score=81.75 Aligned_cols=48 Identities=23% Similarity=0.465 Sum_probs=41.5
Q ss_pred CCCCCCcccccccccccCCCceeeecCCCccchhccccccC---CCCCCcccccC
Q 015431 90 SSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD---SSCPVCRYCQQ 141 (407)
Q Consensus 90 ~~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~---~~CP~Cr~~~~ 141 (407)
.+.+...||||++.+.+ |+.++|+|.||..|+..|.. ..||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCS----PKQTECGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp SCCCCEECTTTCCEESS----CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred cCCcCCCCCCCChHhcC----eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 34578899999999987 67789999999999999972 68999999765
No 35
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.82 E-value=2.4e-09 Score=77.44 Aligned_cols=45 Identities=18% Similarity=0.411 Sum_probs=39.9
Q ss_pred CCCCcccccccccccCCCceeeecCCCccchhccccccCCCCCCcccccC
Q 015431 92 TEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQQ 141 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~ 141 (407)
.+..+|+||++.|.. |++++|+|+||..|+..| ...||+||..+.
T Consensus 4 ~~~~~C~IC~~~~~~----p~~l~CgH~fC~~Ci~~~-~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC----PKLLPCLHTLCSGCLEAS-GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBC----CSCSTTSCCSBTTTCSSS-SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCC----eEEcCCCCcccHHHHccC-CCCCCcCCcEee
Confidence 467899999999987 889999999999999885 568999999875
No 36
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.82 E-value=1.9e-09 Score=83.56 Aligned_cols=53 Identities=23% Similarity=0.587 Sum_probs=40.0
Q ss_pred CCCCCCCcccccccccccCCCceeeecCCCccchhcccccc---CCCCCCcccccC
Q 015431 89 ASSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWT---DSSCPVCRYCQQ 141 (407)
Q Consensus 89 ~~~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~---~~~CP~Cr~~~~ 141 (407)
..+.+..+||||++.+.........++|||+||..|+..++ ...||+||..+.
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 61 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred cccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccC
Confidence 34568899999999885322112223599999999998875 378999999876
No 37
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.81 E-value=6.4e-10 Score=90.22 Aligned_cols=47 Identities=32% Similarity=0.695 Sum_probs=41.7
Q ss_pred CCCCCcccccccccccCCCceee-ecCCCccchhccccccC---CCCCCcccccC
Q 015431 91 STEQPSCPVCLERLDQDTSGILT-TICNHSFHCSCISKWTD---SSCPVCRYCQQ 141 (407)
Q Consensus 91 ~~e~~~C~iCle~~~~~~~~~~~-~~C~H~F~~~Cl~~w~~---~~CP~Cr~~~~ 141 (407)
+.+...||||++.|.. |++ ++|+|+||..||..|.. ..||+||..+.
T Consensus 19 l~~~~~C~IC~~~~~~----p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRD----ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHHHTBCTTTCSBCSS----EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCCccCCccccC----ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 4578899999999987 888 99999999999999964 58999999875
No 38
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.81 E-value=1.3e-09 Score=90.41 Aligned_cols=48 Identities=29% Similarity=0.630 Sum_probs=42.0
Q ss_pred CCCCCCcccccccccccCCCceeeecCCCccchhccccccC---CCCCCcccccC
Q 015431 90 SSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD---SSCPVCRYCQQ 141 (407)
Q Consensus 90 ~~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~---~~CP~Cr~~~~ 141 (407)
...+...|+||++.|.. |++++|+|+||..||..|.. ..||+||..+.
T Consensus 11 ~~~~~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 11 PSLSECQCGICMEILVE----PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp CCHHHHBCTTTCSBCSS----CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCCCccCCcccCc----eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 34577899999999987 88899999999999999974 58999999764
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.80 E-value=7e-10 Score=93.39 Aligned_cols=46 Identities=33% Similarity=0.662 Sum_probs=41.1
Q ss_pred CCCCcccccccccccCCCceeeecCCCccchhccccccC---CCCCCcccccC
Q 015431 92 TEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD---SSCPVCRYCQQ 141 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~---~~CP~Cr~~~~ 141 (407)
.+..+||||++.|.+ |++++|||+||..||..|.. ..||+||..+.
T Consensus 50 ~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 50 EETFQCICCQELVFR----PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLG 98 (124)
T ss_dssp HHHTBCTTTSSBCSS----EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred ccCCCCCcCChHHcC----cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCC
Confidence 366899999999997 88999999999999999963 48999999876
No 40
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.79 E-value=1.4e-09 Score=90.02 Aligned_cols=48 Identities=27% Similarity=0.617 Sum_probs=38.9
Q ss_pred CCcccccccccccCC--------------CceeeecCCCccchhcccccc-------CCCCCCcccccC
Q 015431 94 QPSCPVCLERLDQDT--------------SGILTTICNHSFHCSCISKWT-------DSSCPVCRYCQQ 141 (407)
Q Consensus 94 ~~~C~iCle~~~~~~--------------~~~~~~~C~H~F~~~Cl~~w~-------~~~CP~Cr~~~~ 141 (407)
...|+||++.|.... ....+++|+|.||..||..|. ...||+||..+.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 468999999996532 123378999999999999997 368999999875
No 41
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.78 E-value=2.1e-09 Score=89.62 Aligned_cols=47 Identities=26% Similarity=0.547 Sum_probs=42.4
Q ss_pred CCCCCcccccccccccCCCceeee-cCCCccchhccccccCCCCCCcccccC
Q 015431 91 STEQPSCPVCLERLDQDTSGILTT-ICNHSFHCSCISKWTDSSCPVCRYCQQ 141 (407)
Q Consensus 91 ~~e~~~C~iCle~~~~~~~~~~~~-~C~H~F~~~Cl~~w~~~~CP~Cr~~~~ 141 (407)
+.+..+||||++.|.+ |+++ +|||+||..||..|....||+||..+.
T Consensus 19 l~~~~~C~IC~~~~~~----pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 19 LEKLLRCSRCTNILRE----PVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp HHHTTSCSSSCSCCSS----CBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCS
T ss_pred chhCCCCCCCChHhhC----ccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCc
Confidence 3478999999999987 7887 999999999999998889999999874
No 42
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.77 E-value=1e-09 Score=80.85 Aligned_cols=49 Identities=29% Similarity=0.697 Sum_probs=40.8
Q ss_pred CCCcccccccccccC---CCceeeecCCCccchhccccccC--CCCCCcccccC
Q 015431 93 EQPSCPVCLERLDQD---TSGILTTICNHSFHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 93 e~~~C~iCle~~~~~---~~~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
+...|+||++.+... ...++.++|+|.||..|+..|.. ..||+||..+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCC
Confidence 467899999999752 23347899999999999999964 78999999875
No 43
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=2.1e-09 Score=81.02 Aligned_cols=48 Identities=35% Similarity=0.887 Sum_probs=41.5
Q ss_pred CCCCCCCcccccccccccCCCceeeecCCCccchhccccccC--CCCCCcccccC
Q 015431 89 ASSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 89 ~~~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
....+...|+||++.+.. +.++|+|.||..|+..|.. ..||+||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred hcCCCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHHCcCcCCCcCCccc
Confidence 344578899999999875 6789999999999999965 88999999875
No 44
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.73 E-value=2.2e-09 Score=80.35 Aligned_cols=46 Identities=30% Similarity=0.844 Sum_probs=39.4
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhccccccC--CCCCCcccccC
Q 015431 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
+...|+||++.+.. .++.++|+|.||..|+..|.. ..||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~---~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSN---YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCS---CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCccccC---CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 56789999999875 247889999999999999964 78999998765
No 45
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.73 E-value=2.8e-09 Score=87.46 Aligned_cols=47 Identities=26% Similarity=0.562 Sum_probs=41.3
Q ss_pred CCCCCcccccccccccCCCceeee-cCCCccchhccccccC--CCCCCcccccC
Q 015431 91 STEQPSCPVCLERLDQDTSGILTT-ICNHSFHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 91 ~~e~~~C~iCle~~~~~~~~~~~~-~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
+.+...||||++.|.+ |+++ +|||+||..||..|.. ..||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFID----ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVH 61 (108)
T ss_dssp HGGGTBCTTTSSBCSS----EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred cCCcCCCccCChHHhC----cCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccc
Confidence 3478899999999987 8877 9999999999999964 78999999765
No 46
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.73 E-value=7.9e-09 Score=83.58 Aligned_cols=48 Identities=10% Similarity=0.018 Sum_probs=42.9
Q ss_pred CCCCCCcccccccccccCCCceeeecCC-CccchhccccccC--CCCCCcccccC
Q 015431 90 SSTEQPSCPVCLERLDQDTSGILTTICN-HSFHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 90 ~~~e~~~C~iCle~~~~~~~~~~~~~C~-H~F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
...+...||||++.|.+ |++++|| |+||..||..|+. ..||+|+..+.
T Consensus 18 ~~p~~~~CpI~~~~m~d----PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCD----PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp SCCTTTBCTTTCSBCSS----EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred cCcHhcCCcCccccccC----CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 34577899999999998 9999999 9999999999974 78999999875
No 47
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.72 E-value=2.2e-09 Score=86.64 Aligned_cols=46 Identities=24% Similarity=0.707 Sum_probs=40.4
Q ss_pred CCCCcccccccccccCCCceeee-cCCCccchhccccccC--CCCCCcccccC
Q 015431 92 TEQPSCPVCLERLDQDTSGILTT-ICNHSFHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~-~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
.+...||||++.|.+ |+++ +|||+||..|+..|.. ..||+||..+.
T Consensus 20 ~~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 20 DDLLRCGICFEYFNI----AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68 (99)
T ss_dssp HHHTBCTTTCSBCSS----EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcccCChhhCC----cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence 367899999999987 7776 8999999999999974 68999999775
No 48
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.69 E-value=7.1e-09 Score=81.57 Aligned_cols=48 Identities=10% Similarity=0.027 Sum_probs=42.8
Q ss_pred CCCCCCcccccccccccCCCceeeecCCCccchhccccccC--CCCCCcccccC
Q 015431 90 SSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 90 ~~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
...+...||||++.|.+ |++++|||+||..||..|+. ..||+|+..+.
T Consensus 10 ~~p~~~~CpI~~~~m~d----PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTD----PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp TCCTTTBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred cCchheECcccCchhcC----CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 34578999999999998 99999999999999999974 78999998765
No 49
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.68 E-value=7.1e-09 Score=85.04 Aligned_cols=49 Identities=27% Similarity=0.668 Sum_probs=39.6
Q ss_pred CCCcccccccccccC--------------CCceeeecCCCccchhccccccC--CCCCCcccccC
Q 015431 93 EQPSCPVCLERLDQD--------------TSGILTTICNHSFHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 93 e~~~C~iCle~~~~~--------------~~~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
+..+|+||++.|... ...++.++|+|.||..||..|.. .+||+||..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 567899999998753 11246789999999999999964 88999999753
No 50
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.67 E-value=8.1e-09 Score=83.80 Aligned_cols=47 Identities=11% Similarity=0.022 Sum_probs=42.5
Q ss_pred CCCCCcccccccccccCCCceeeecCCCccchhccccccC--CCCCCcccccC
Q 015431 91 STEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 91 ~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
..+...||||++.|.+ |++++|||+||..||..|+. ..||+|+..+.
T Consensus 26 ~p~~~~CpI~~~~m~d----PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 74 (100)
T 2kre_A 26 APDEFRDPLMDTLMTD----PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp CSTTTBCTTTCSBCSS----EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred CcHhhCCcCccCcccC----CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence 3477899999999998 99999999999999999974 78999999875
No 51
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.67 E-value=7.4e-09 Score=79.21 Aligned_cols=44 Identities=25% Similarity=0.585 Sum_probs=39.8
Q ss_pred CCCCcccccccccccCCCceeeecCCCc-cchhccccccCCCCCCcccccC
Q 015431 92 TEQPSCPVCLERLDQDTSGILTTICNHS-FHCSCISKWTDSSCPVCRYCQQ 141 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~-F~~~Cl~~w~~~~CP~Cr~~~~ 141 (407)
.+...|+||++.+.+ +++++|+|. ||..|+..| ..||+||..+.
T Consensus 22 ~~~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~--~~CP~Cr~~i~ 66 (74)
T 4ic3_A 22 QEEKLCKICMDRNIA----IVFVPCGHLVTCKQCAEAV--DKCPMCYTVIT 66 (74)
T ss_dssp HHHTBCTTTSSSBCC----EEEETTCCBCCCHHHHTTC--SBCTTTCCBCS
T ss_pred ccCCCCCCCCCCCCC----EEEcCCCChhHHHHhhhcC--ccCCCcCcCcc
Confidence 366899999999987 889999999 999999999 79999999764
No 52
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.66 E-value=3.4e-09 Score=92.42 Aligned_cols=46 Identities=30% Similarity=0.520 Sum_probs=41.0
Q ss_pred CCCCcccccccccccCCCceeeecCCCccchhccccccC---CCCCCcccccC
Q 015431 92 TEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD---SSCPVCRYCQQ 141 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~---~~CP~Cr~~~~ 141 (407)
.+...|+||++.|.+ |++++|+|+||..||..|.. ..||+||..+.
T Consensus 76 ~~~~~C~IC~~~~~~----pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 124 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQ----PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLG 124 (150)
T ss_dssp HHHTBCTTTSSBCSS----EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred ccCCEeecCChhhcC----CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCC
Confidence 366899999999987 88999999999999999964 48999999876
No 53
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=1.6e-08 Score=78.72 Aligned_cols=49 Identities=29% Similarity=0.729 Sum_probs=40.6
Q ss_pred CCCCCcccccccccccCCCceeeecCC-----CccchhccccccC----CCCCCcccccC
Q 015431 91 STEQPSCPVCLERLDQDTSGILTTICN-----HSFHCSCISKWTD----SSCPVCRYCQQ 141 (407)
Q Consensus 91 ~~e~~~C~iCle~~~~~~~~~~~~~C~-----H~F~~~Cl~~w~~----~~CP~Cr~~~~ 141 (407)
..+...|+||++.++++. ++.+||. |.||..||.+|.. ..||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~--~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDES--PLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp CTTSCCCSSSCCCCCSSS--CEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCCeEcCccccCCC--eeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 346789999999987533 5678996 9999999999964 58999999875
No 54
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.64 E-value=3.9e-09 Score=86.82 Aligned_cols=45 Identities=33% Similarity=0.790 Sum_probs=39.5
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhccccccC-----CCCCCcccccC
Q 015431 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD-----SSCPVCRYCQQ 141 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~-----~~CP~Cr~~~~ 141 (407)
+...||||++.+.+ |++++|+|+||..|+..|.. ..||+||..+.
T Consensus 20 ~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 20 KILECPICLELIKE----PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HHTSCSSSCCCCSS----CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCCcccChhhcC----eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 56799999999987 77889999999999999964 37999999775
No 55
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.61 E-value=1e-08 Score=85.59 Aligned_cols=48 Identities=31% Similarity=0.593 Sum_probs=42.3
Q ss_pred CCCCCCcccccccccccCCCceeeecCCCccchhccccccC---CCCCCcccccC
Q 015431 90 SSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD---SSCPVCRYCQQ 141 (407)
Q Consensus 90 ~~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~---~~CP~Cr~~~~ 141 (407)
.+.+...||||++.+.. |++++|+|+||..||..|.. ..||+||..+.
T Consensus 14 ~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (118)
T 3hct_A 14 PLESKYECPICLMALRE----AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (118)
T ss_dssp CCCGGGBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCcCChhhcC----eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcC
Confidence 44578899999999987 88899999999999999964 49999999875
No 56
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.57 E-value=7.4e-09 Score=91.46 Aligned_cols=47 Identities=34% Similarity=0.719 Sum_probs=40.2
Q ss_pred CCCCCcccccccccccCCCceeee-cCCCccchhccccccC---CCCCCcccccC
Q 015431 91 STEQPSCPVCLERLDQDTSGILTT-ICNHSFHCSCISKWTD---SSCPVCRYCQQ 141 (407)
Q Consensus 91 ~~e~~~C~iCle~~~~~~~~~~~~-~C~H~F~~~Cl~~w~~---~~CP~Cr~~~~ 141 (407)
+.+...||||++.|.+ |+++ +|+|+||..||..|.. ..||+||..+.
T Consensus 51 ~~~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 51 LHSELMCPICLDMLKN----TMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp CHHHHBCTTTSSBCSS----EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCCCcccChHhhC----cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 3466799999999997 7766 9999999999999963 67999999764
No 57
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.55 E-value=1.1e-08 Score=84.89 Aligned_cols=46 Identities=35% Similarity=0.674 Sum_probs=41.0
Q ss_pred CCCCcccccccccccCCCceeeecCCCccchhccccccC---CCCCCcccccC
Q 015431 92 TEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD---SSCPVCRYCQQ 141 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~---~~CP~Cr~~~~ 141 (407)
.+...||||++.+.+ |++++|||+||..||..|.. ..||+||..+.
T Consensus 21 ~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (116)
T 1rmd_A 21 VKSISCQICEHILAD----PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69 (116)
T ss_dssp HHHTBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred cCCCCCCCCCcHhcC----cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCC
Confidence 467899999999987 88899999999999999963 68999999875
No 58
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.51 E-value=1.4e-08 Score=84.70 Aligned_cols=49 Identities=27% Similarity=0.668 Sum_probs=1.1
Q ss_pred CCCcccccccccccC-------------CC-ceeeecCCCccchhccccccC--CCCCCcccccC
Q 015431 93 EQPSCPVCLERLDQD-------------TS-GILTTICNHSFHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 93 e~~~C~iCle~~~~~-------------~~-~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
+..+|+||++.|... .. .++.++|+|.||..||..|.. .+||+||..+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 457999999999742 11 223469999999999999975 78999998753
No 59
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.49 E-value=3.6e-08 Score=78.93 Aligned_cols=45 Identities=20% Similarity=0.593 Sum_probs=39.1
Q ss_pred CCCCCcccccccccccCCCceeeec-CCCccchhccccccC--------CCCCC--cccc
Q 015431 91 STEQPSCPVCLERLDQDTSGILTTI-CNHSFHCSCISKWTD--------SSCPV--CRYC 139 (407)
Q Consensus 91 ~~e~~~C~iCle~~~~~~~~~~~~~-C~H~F~~~Cl~~w~~--------~~CP~--Cr~~ 139 (407)
..+...||||++.|.+ |++++ |||+||..||..|+. ..||+ |+..
T Consensus 4 ~~~~~~CPI~~~~~~d----PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKK----PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CSSCCBCTTTCSBCSS----EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCcEeECcCcCchhcC----CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3577899999999998 99996 999999999999964 38999 8865
No 60
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.48 E-value=1.3e-08 Score=87.78 Aligned_cols=47 Identities=17% Similarity=0.453 Sum_probs=41.3
Q ss_pred CCCCCcccccccccccCCCceeeecCCCccchhccccccC---CCCCCcccccC
Q 015431 91 STEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD---SSCPVCRYCQQ 141 (407)
Q Consensus 91 ~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~---~~CP~Cr~~~~ 141 (407)
+.+...||||++.|.+ |++++|||+||..||..|.. ..||+||..+.
T Consensus 28 l~~~~~C~IC~~~~~~----pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 28 LEAKYLCSACRNVLRR----PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CCGGGBCTTTCSBCSS----EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CCcCcCCCCCChhhcC----cEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 4577899999999998 88899999999999999975 58999999653
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.46 E-value=5.6e-08 Score=92.26 Aligned_cols=46 Identities=13% Similarity=0.077 Sum_probs=41.0
Q ss_pred CCCCcccccccccccCCCceeeecCCCccchhccccccC---CCCCCcccccC
Q 015431 92 TEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD---SSCPVCRYCQQ 141 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~---~~CP~Cr~~~~ 141 (407)
.+...||||++.|.+ |++++|||+||..||..|.. ..||+|+..+.
T Consensus 206 ~~~~~c~i~~~~~~d----Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 206 PDYLCGKISFELMRE----PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CSTTBCTTTCSBCSS----EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CcccCCcCcCCHhcC----CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 367899999999998 99999999999999999964 45999999775
No 62
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.39 E-value=1.1e-07 Score=73.66 Aligned_cols=44 Identities=34% Similarity=0.586 Sum_probs=38.9
Q ss_pred CCCCcccccccccccCCCceeeecCCCc-cchhccccccCCCCCCcccccC
Q 015431 92 TEQPSCPVCLERLDQDTSGILTTICNHS-FHCSCISKWTDSSCPVCRYCQQ 141 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~-F~~~Cl~~w~~~~CP~Cr~~~~ 141 (407)
.+...|+||++.+.+ ++.+||||. ||..|+..|. .||+||..+.
T Consensus 16 ~~~~~C~IC~~~~~~----~v~~pCgH~~~C~~C~~~~~--~CP~Cr~~i~ 60 (79)
T 2yho_A 16 KEAMLCMVCCEEEIN----STFCPCGHTVCCESCAAQLQ--SCPVCRSRVE 60 (79)
T ss_dssp HHHTBCTTTSSSBCC----EEEETTCBCCBCHHHHTTCS--BCTTTCCBCC
T ss_pred CCCCEeEEeCcccCc----EEEECCCCHHHHHHHHHhcC--cCCCCCchhh
Confidence 356789999999887 889999999 9999999884 9999999875
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=1.1e-07 Score=72.83 Aligned_cols=44 Identities=25% Similarity=0.585 Sum_probs=38.2
Q ss_pred CCCCcccccccccccCCCceeeecCCCc-cchhccccccCCCCCCcccccC
Q 015431 92 TEQPSCPVCLERLDQDTSGILTTICNHS-FHCSCISKWTDSSCPVCRYCQQ 141 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~-F~~~Cl~~w~~~~CP~Cr~~~~ 141 (407)
.+...|+||++.+.+ ++.++|+|. ||..|+..+ ..||+||..+.
T Consensus 23 ~~~~~C~IC~~~~~~----~~~~pCgH~~~C~~C~~~~--~~CP~Cr~~i~ 67 (75)
T 2ecg_A 23 QEEKLCKICMDRNIA----IVFVPCGHLVTCKQCAEAV--DKCPMCYTVIT 67 (75)
T ss_dssp HHHHSCSSSCSSCCC----BCCSSSCCCCBCHHHHHHC--SBCTTTCCBCC
T ss_pred CCCCCCCcCCCCCCC----EEEecCCCHHHHHHHhhCC--CCCccCCceec
Confidence 356789999999987 888999999 999999764 78999999775
No 64
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.34 E-value=8.2e-08 Score=80.83 Aligned_cols=50 Identities=28% Similarity=0.694 Sum_probs=41.4
Q ss_pred CCCCcccccccccccC---CCceeeecCCCccchhccccccC--CCCCCcccccC
Q 015431 92 TEQPSCPVCLERLDQD---TSGILTTICNHSFHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~---~~~~~~~~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
.+...|+||++.|... ...++.++|+|.||..|+..|.. .+||+||..+.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence 4678899999999752 22347899999999999999964 89999999875
No 65
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.34 E-value=1.2e-07 Score=83.86 Aligned_cols=48 Identities=31% Similarity=0.593 Sum_probs=42.5
Q ss_pred CCCCCCcccccccccccCCCceeeecCCCccchhccccccC---CCCCCcccccC
Q 015431 90 SSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD---SSCPVCRYCQQ 141 (407)
Q Consensus 90 ~~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~---~~CP~Cr~~~~ 141 (407)
.+.+...||||++.|.+ |+.++|||+||..|+..|.. ..||+||..+.
T Consensus 14 ~~~~~~~C~IC~~~~~~----pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (170)
T 3hcs_A 14 PLESKYECPICLMALRE----AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (170)
T ss_dssp CCCGGGBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCChhhcC----cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcc
Confidence 44578999999999997 88899999999999999964 59999999875
No 66
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.32 E-value=2e-07 Score=92.67 Aligned_cols=44 Identities=27% Similarity=0.746 Sum_probs=39.3
Q ss_pred CCcccccccccccCCCceeeecCCCccchhcccccc---CCCCCCcccccC
Q 015431 94 QPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWT---DSSCPVCRYCQQ 141 (407)
Q Consensus 94 ~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~---~~~CP~Cr~~~~ 141 (407)
...|+||++.+.. |+.++|+|.||..|+..|. ...||+||..+.
T Consensus 332 ~~~C~ICle~~~~----pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~ 378 (389)
T 2y1n_A 332 FQLCKICAENDKD----VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378 (389)
T ss_dssp SSBCTTTSSSBCC----EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCcCCCC----eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccC
Confidence 3689999999987 8899999999999999995 488999999775
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.32 E-value=1.4e-07 Score=84.20 Aligned_cols=46 Identities=13% Similarity=0.067 Sum_probs=41.1
Q ss_pred CCCCcccccccccccCCCceeeecCCCccchhccccccC---CCCCCcccccC
Q 015431 92 TEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD---SSCPVCRYCQQ 141 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~---~~CP~Cr~~~~ 141 (407)
.+...||||++.|.+ |++++|||+||..||..|.. .+||+|+..+.
T Consensus 104 p~~f~CPI~~elm~D----PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 104 PDYLCGKISFELMRE----PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp CGGGBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred cHhhcccCccccCCC----CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 477899999999998 99999999999999999963 46999998765
No 68
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.28 E-value=1.3e-07 Score=70.19 Aligned_cols=46 Identities=26% Similarity=0.474 Sum_probs=38.6
Q ss_pred CCCCcccccccccccCCCceeee--cCCCc-cchhccccccC--CCCCCcccccC
Q 015431 92 TEQPSCPVCLERLDQDTSGILTT--ICNHS-FHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~--~C~H~-F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
.+...|+||++.+.+ ++.+ ||||. ||..|+..|.. ..||+||..+.
T Consensus 6 ~~~~~C~IC~~~~~~----~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKN----GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSC----EEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCC----EEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 367789999999876 6665 99999 89999999864 68999999764
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.23 E-value=3.3e-07 Score=86.08 Aligned_cols=48 Identities=23% Similarity=0.564 Sum_probs=41.1
Q ss_pred CCCCCCcccccccccccCCCceeee-cCCCccchhccccccC----CCCCC--cccccC
Q 015431 90 SSTEQPSCPVCLERLDQDTSGILTT-ICNHSFHCSCISKWTD----SSCPV--CRYCQQ 141 (407)
Q Consensus 90 ~~~e~~~C~iCle~~~~~~~~~~~~-~C~H~F~~~Cl~~w~~----~~CP~--Cr~~~~ 141 (407)
......+||||++.|.+ |++. .|||+||..||..|+. ..||+ |+..+.
T Consensus 177 ~~~~el~CPIcl~~f~D----PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 177 GGKIELTCPITCKPYEA----PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp SSBCCSBCTTTSSBCSS----EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred CCceeeECcCccCcccC----CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 45688999999999998 8875 9999999999999864 46999 998664
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.23 E-value=5.3e-07 Score=88.76 Aligned_cols=44 Identities=25% Similarity=0.679 Sum_probs=39.8
Q ss_pred CCCCcccccccccccCCCceeeecCCCc-cchhccccccCCCCCCcccccC
Q 015431 92 TEQPSCPVCLERLDQDTSGILTTICNHS-FHCSCISKWTDSSCPVCRYCQQ 141 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~-F~~~Cl~~w~~~~CP~Cr~~~~ 141 (407)
.+...|+||++.+.. ++.+||||. ||..|+..| ..||+||..+.
T Consensus 293 ~~~~~C~IC~~~~~~----~v~lpCgH~~fC~~C~~~~--~~CP~CR~~i~ 337 (345)
T 3t6p_A 293 QEERTCKVCMDKEVS----VVFIPCGHLVVCQECAPSL--RKCPICRGIIK 337 (345)
T ss_dssp HTTCBCTTTSSSBCC----EEEETTCCEEECTTTGGGC--SBCTTTCCBCC
T ss_pred cCCCCCCccCCcCCc----eEEcCCCChhHhHHHHhcC--CcCCCCCCCcc
Confidence 367899999999987 889999999 999999998 78999999764
No 71
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=1.4e-06 Score=65.41 Aligned_cols=44 Identities=25% Similarity=0.579 Sum_probs=38.2
Q ss_pred CCCCcccccccccccCCCceeeecCCCc-cchhccccccCCCCCCcccccC
Q 015431 92 TEQPSCPVCLERLDQDTSGILTTICNHS-FHCSCISKWTDSSCPVCRYCQQ 141 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~-F~~~Cl~~w~~~~CP~Cr~~~~ 141 (407)
.+...|+||++...+ ++.+||+|. ||..|+.. ...||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~----~v~~pCgH~~~C~~C~~~--~~~CP~CR~~i~ 57 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN----WVLLPCRHTCLCDGCVKY--FQQCPMCRQFVQ 57 (68)
T ss_dssp CCSSCCSSSSSSCCC----CEETTTTBCCSCTTHHHH--CSSCTTTCCCCC
T ss_pred CCCCCCCCcCcCCCC----EEEECCCChhhhHHHHhc--CCCCCCCCcchh
Confidence 467899999999876 889999999 99999985 378999999765
No 72
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.17 E-value=3.1e-07 Score=67.84 Aligned_cols=45 Identities=22% Similarity=0.436 Sum_probs=37.6
Q ss_pred CCCcccccccccccCCCceeee--cCCCc-cchhccccccC--CCCCCcccccC
Q 015431 93 EQPSCPVCLERLDQDTSGILTT--ICNHS-FHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~--~C~H~-F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
....|+||++...+ +..+ ||||. ||..|+..|.. ..||+||..+.
T Consensus 6 ~~~~C~IC~~~~~~----~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRD----GNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSC----EEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCC----eEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 45789999999876 5555 99999 99999999863 58999999764
No 73
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.96 E-value=3.6e-06 Score=64.19 Aligned_cols=47 Identities=26% Similarity=0.584 Sum_probs=38.5
Q ss_pred CCCCcccccccccccCCCceeeecCCCccchhccccccC----CCCCCcccccC
Q 015431 92 TEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD----SSCPVCRYCQQ 141 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~----~~CP~Cr~~~~ 141 (407)
.....|+||.+.+.. +..-..|+|.||..||.+|.. ..||+||....
T Consensus 13 ~~i~~C~IC~~~i~~---g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQ---GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSS---SEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHccc---CCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 367899999999985 233449999999999999964 57999998764
No 74
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.88 E-value=2e-06 Score=68.49 Aligned_cols=47 Identities=21% Similarity=0.570 Sum_probs=34.7
Q ss_pred CCCCcccccccccccCCCceeeecCCCccchhccccccC----------CCCCC--cccc
Q 015431 92 TEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD----------SSCPV--CRYC 139 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~----------~~CP~--Cr~~ 139 (407)
.+..+|+||++.+.... .+.+.+|+|.||..|+..+.. ..||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~-~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQ-MTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGG-EEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCccccccc-ceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 35678999999987521 122347999999999988632 47999 9886
No 75
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.73 E-value=7.3e-06 Score=59.88 Aligned_cols=46 Identities=28% Similarity=0.717 Sum_probs=36.0
Q ss_pred CCCCcccccccccccCCCceeeecCCC-----ccchhccccccC----CCCCCcccccC
Q 015431 92 TEQPSCPVCLERLDQDTSGILTTICNH-----SFHCSCISKWTD----SSCPVCRYCQQ 141 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H-----~F~~~Cl~~w~~----~~CP~Cr~~~~ 141 (407)
.+...|.||++..++ ++.+||.+ .||..||.+|.. ..||+|++.+.
T Consensus 4 ~~~~~CrIC~~~~~~----~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGN----ERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSC----CCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCC----ceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 367899999987433 45678664 899999999953 78999998764
No 76
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.58 E-value=1.5e-05 Score=77.33 Aligned_cols=50 Identities=22% Similarity=0.585 Sum_probs=39.2
Q ss_pred CCCCcccccccccccCCCcee----eecCCCccchhccccccC-------------CCCCCcccccC
Q 015431 92 TEQPSCPVCLERLDQDTSGIL----TTICNHSFHCSCISKWTD-------------SSCPVCRYCQQ 141 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~----~~~C~H~F~~~Cl~~w~~-------------~~CP~Cr~~~~ 141 (407)
.....|+||++.+.++...|. .+.|+|.||..||.+|.. ..||.||..+.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 366789999999986444342 468999999999999953 36999998764
No 77
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.47 E-value=3.1e-05 Score=56.69 Aligned_cols=43 Identities=9% Similarity=0.123 Sum_probs=38.5
Q ss_pred CcccccccccccCCCceeee-cCCCccchhccccccC--CCCCCcccccC
Q 015431 95 PSCPVCLERLDQDTSGILTT-ICNHSFHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 95 ~~C~iCle~~~~~~~~~~~~-~C~H~F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
..||||++.|.+ |+.+ ++||+|+..||.+|.. ..||+++..+.
T Consensus 4 ~~CpIs~~~m~d----PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 4 MLCAISGKVPRR----PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp CCCTTTCSCCSS----EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred EEecCCCCCCCC----CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 579999999998 8888 9999999999999964 67999998764
No 78
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.30 E-value=0.0001 Score=58.67 Aligned_cols=65 Identities=29% Similarity=0.508 Sum_probs=46.0
Q ss_pred cccccccccccCCCceeeecCCCccchhcccccc---CCCCCCcccccCCCCccceeecccCCCcccccccCccccccC
Q 015431 96 SCPVCLERLDQDTSGILTTICNHSFHCSCISKWT---DSSCPVCRYCQQQPEKSICFVCQTSENLWMCVICGFVGCGRY 171 (407)
Q Consensus 96 ~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~---~~~CP~Cr~~~~~~~~~~C~~C~~~~~l~~Cl~Cg~~~Cgr~ 171 (407)
.|++|.--+.. -.+.+||.|.||.+|+..|. +..||.|+..+. .=..+.. +++|+|.+ ..+|-|.
T Consensus 3 fC~~C~~Pi~i---ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~-----rVe~~~~-~~if~C~~--~~~Ckrt 70 (101)
T 3vk6_A 3 FCDKCGLPIKV---YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ-----RIEQCTR-GSLFMCSI--VQGCKRT 70 (101)
T ss_dssp BCTTTCSBCSE---EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS-----EEEEEEG-GGCCCCCC--CCCCCCC
T ss_pred ecCccCCCeEE---EeeeccccccHHHHHHHHHHhccCCCCcCcCCeee-----eeEEecc-CCEEECCC--CCCHHHH
Confidence 47777766553 13589999999999999884 479999999876 1122333 78888753 5677653
No 79
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.53 E-value=0.0011 Score=52.89 Aligned_cols=75 Identities=15% Similarity=0.264 Sum_probs=45.4
Q ss_pred CCCcccccccc-cccCCCceee--ecCCCccchhcccc-ccCCCCCCcccccC------CCCccceeecccCCCcccccc
Q 015431 93 EQPSCPVCLER-LDQDTSGILT--TICNHSFHCSCISK-WTDSSCPVCRYCQQ------QPEKSICFVCQTSENLWMCVI 162 (407)
Q Consensus 93 e~~~C~iCle~-~~~~~~~~~~--~~C~H~F~~~Cl~~-w~~~~CP~Cr~~~~------~~~~~~C~~C~~~~~l~~Cl~ 162 (407)
+...|+||++. +.+ ++. +.|+|+||..|+.. |....-. =+..+. +.....|.......-.++|..
T Consensus 2 ee~~C~~C~~~~~~~----av~~C~~C~~~~C~~Cl~~~h~~~~~~-~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~ 76 (101)
T 2jun_A 2 EKVLCQFCDQDPAQD----AVKTCVTCEVSYCDECLKATHPNKKPF-TGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVT 76 (101)
T ss_dssp CCCBCTTCCSSSCCB----CCEEETTTTEEECHHHHHHHSCSCSSS-TTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETT
T ss_pred CCCCCcCCCCCCCCC----ceEECCcCChHHhHHHCHHHhccCCcc-CCCeeeccccccCccCCcCcCcCCCcceEECCC
Confidence 56899999976 444 444 89999999999997 5421110 011111 111234444433334467999
Q ss_pred cCccccccCC
Q 015431 163 CGFVGCGRYK 172 (407)
Q Consensus 163 Cg~~~Cgr~~ 172 (407)
|+...|..+.
T Consensus 77 ~~~~iC~~C~ 86 (101)
T 2jun_A 77 DDQLICALCK 86 (101)
T ss_dssp TTEEECHHHH
T ss_pred CCCccchhcC
Confidence 9998887654
No 80
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.60 E-value=0.47 Score=53.14 Aligned_cols=72 Identities=4% Similarity=-0.017 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhHH
Q 015431 299 LQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDLMAYLEAEK 370 (407)
Q Consensus 299 l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dLm~~l~~~~ 370 (407)
+..+.+++..+.++...+++....+.+..+.++++..++.+++...+....+++..|++|+.||..-+..++
T Consensus 979 ~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~ 1050 (1080)
T 2dfs_A 979 AKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQA 1050 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555666666666666666666667777778888888875544444
No 81
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=94.58 E-value=0.014 Score=54.20 Aligned_cols=46 Identities=26% Similarity=0.597 Sum_probs=36.7
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhccccccC----CCCCCcccccC
Q 015431 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD----SSCPVCRYCQQ 141 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~----~~CP~Cr~~~~ 141 (407)
..+.|.+|.+.... |..=..|+|.||..|+..|.. ..||.|+....
T Consensus 179 ~i~~C~iC~~iv~~---g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQ---GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSS---CEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCcCcchhhHHhC---CcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 48899999999885 233234999999999999963 58999998754
No 82
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=93.36 E-value=1.1 Score=45.29 Aligned_cols=15 Identities=40% Similarity=0.658 Sum_probs=10.9
Q ss_pred HHHHHhHhHHHHhhh
Q 015431 361 DLMAYLEAEKTLQQL 375 (407)
Q Consensus 361 dLm~~l~~~~~~~~~ 375 (407)
||..|-+.|+++.+.
T Consensus 174 d~~sY~~~QKQLeQv 188 (562)
T 3ghg_A 174 DLKDYEDQQKQLEQV 188 (562)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 477777777777775
No 83
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=92.99 E-value=3.2 Score=34.91 Aligned_cols=67 Identities=13% Similarity=0.062 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 015431 296 AQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDLMAYL 366 (407)
Q Consensus 296 ~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dLm~~l 366 (407)
...+-+++...+.++.++..+..-...|.......+.+++.+..+ +....+++.+|++++..|-.-+
T Consensus 67 adEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e----~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 67 ADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKE----IKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555544444444444444444444444433 3334456777888888775443
No 84
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.94 E-value=1.4 Score=36.48 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015431 298 KLQKMQAKLDRCVREKKFLDDLNENLL 324 (407)
Q Consensus 298 ~l~~l~~~l~~~~~e~~~l~eln~~l~ 324 (407)
.+..++..+..+..++..++..+..|.
T Consensus 37 Ei~elrr~iq~L~~el~~l~~~~~~LE 63 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNVKKQCANLQ 63 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 455555566666666665555554444
No 85
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=91.75 E-value=3.6 Score=33.57 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 015431 328 EMWKAKISEIEEREKMALRAKDDKIQDSEAQLR 360 (407)
Q Consensus 328 ~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~ 360 (407)
-.|..+++.+.+++.--.+..+++|.+|+.|+.
T Consensus 86 ~dLE~~iesL~eEl~FLKk~heeEl~eLq~qi~ 118 (119)
T 3ol1_A 86 LDLERKVESLQEEIAFLKKLHEEEIQELQAQIQ 118 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566666666666655566667777766653
No 86
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.39 E-value=1.3 Score=36.89 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 015431 298 KLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDL 362 (407)
Q Consensus 298 ~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dL 362 (407)
.+..++..+..+..++..++..+..|. ..+.+++.+....+...+..|.+|+.++..+
T Consensus 39 Ei~elrr~iq~L~~el~~l~~~~~sLE-------~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~ 96 (131)
T 3tnu_A 39 EISELRRTMQNLEIELQSQLSMKASLE-------NSLEETKGRYCMQLAQIQEMIGSVEEQLAQL 96 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555544444443 3333333333333333334444444444433
No 87
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=91.13 E-value=7.7 Score=34.29 Aligned_cols=9 Identities=33% Similarity=0.571 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 015431 351 KIQDSEAQL 359 (407)
Q Consensus 351 ~i~~Leeq~ 359 (407)
.+.|++..+
T Consensus 131 SleD~e~kl 139 (189)
T 2v71_A 131 SLEDFEQRL 139 (189)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 333444333
No 88
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=89.99 E-value=4.6 Score=45.19 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 015431 297 QKLQKMQAKLDRCVREKKFL 316 (407)
Q Consensus 297 ~~l~~l~~~l~~~~~e~~~l 316 (407)
+++..+...+.++.+|++.+
T Consensus 991 ~e~~~l~~~~~~~~ke~~~l 1010 (1080)
T 2dfs_A 991 EEIAKLRKELHQTQTEKKTI 1010 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 89
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=89.85 E-value=11 Score=37.59 Aligned_cols=19 Identities=16% Similarity=0.240 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 015431 295 IAQKLQKMQAKLDRCVREK 313 (407)
Q Consensus 295 ~~~~l~~l~~~l~~~~~e~ 313 (407)
+.+++..++..+-+++++.
T Consensus 402 ~~~~~~~~~~~~~~~~~~~ 420 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQA 420 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHh
Confidence 4445555555555444443
No 90
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.20 E-value=0.35 Score=36.79 Aligned_cols=54 Identities=17% Similarity=0.313 Sum_probs=45.0
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..| .|..++|+++.....+-...+.|.+.++|..-.. +||..|.
T Consensus 22 ~t~~~l~~~F~~~--~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~ 75 (91)
T 2dgw_A 22 VTEKNVMEFLAPL--KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMG 75 (91)
T ss_dssp CCHHHHHHHHTTS--CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEET
T ss_pred CCHHHHHHHHhhC--CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeC
Confidence 4678899999999 7999999996333346689999999999999999 9998764
No 91
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=88.71 E-value=14 Score=33.87 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 015431 328 EMWKAKISEIEEREKMALRAKDDKIQDSEA 357 (407)
Q Consensus 328 ~~l~~kl~~~~~~~~~~~~~~~~~i~~Lee 357 (407)
+.+..++..+++++.......+..+.++++
T Consensus 128 ~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~ 157 (256)
T 3na7_A 128 EDLKKEMLELEKLALELESLVENEVKNIKE 157 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444333333333333333333
No 92
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=88.33 E-value=19 Score=36.52 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=26.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhh-------------HHHHHHHHHHHHHH
Q 015431 321 ENLLKNQEMWKAKISEIEEREKMALRAKD-------------DKIQDSEAQLRDLM 363 (407)
Q Consensus 321 ~~l~~~~~~l~~kl~~~~~~~~~~~~~~~-------------~~i~~Leeq~~dLm 363 (407)
+.|+.+++.+..+|++||-+...+++.-. +.-.++|.|+..|.
T Consensus 134 rvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~ 189 (562)
T 3ghg_A 134 QLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVI 189 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHh
Confidence 45555666666677777766666555422 34456777777653
No 93
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=88.11 E-value=16 Score=33.61 Aligned_cols=42 Identities=19% Similarity=0.090 Sum_probs=22.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 015431 321 ENLLKNQEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDL 362 (407)
Q Consensus 321 ~~l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dL 362 (407)
..+......+...+..+..++...+...++++..|..+...|
T Consensus 128 ~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l 169 (256)
T 3na7_A 128 EDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDL 169 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555555666665555443
No 94
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=87.33 E-value=1.5 Score=38.11 Aligned_cols=39 Identities=13% Similarity=0.196 Sum_probs=21.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 015431 318 DLNENLLKNQEMWKAKISEIEEREKMALRAKDDKIQDSEAQL 359 (407)
Q Consensus 318 eln~~l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~ 359 (407)
++...+..+.+.++.++.-..++++..+.. .+.+|+.++
T Consensus 121 el~~~l~~~~EelR~kl~P~~eeL~~~~~~---~~eeLr~kL 159 (165)
T 1gs9_A 121 EVQAMLGQSTEELRVRLASHLRKLRKRLLR---DADDLQKRL 159 (165)
T ss_dssp HHHTSTTCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHh
Confidence 444445555666667666666665554433 444455544
No 95
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.23 E-value=19 Score=36.80 Aligned_cols=12 Identities=8% Similarity=-0.108 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 015431 351 KIQDSEAQLRDL 362 (407)
Q Consensus 351 ~i~~Leeq~~dL 362 (407)
++.+|.+++.++
T Consensus 559 ~~~~l~~e~~~~ 570 (597)
T 3oja_B 559 KQAELRQETSLK 570 (597)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333344444333
No 96
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=86.24 E-value=21 Score=35.42 Aligned_cols=13 Identities=15% Similarity=0.281 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 015431 300 QKMQAKLDRCVRE 312 (407)
Q Consensus 300 ~~l~~~l~~~~~e 312 (407)
..|+++|+++++-
T Consensus 400 ~~~~~~~~~~~~~ 412 (471)
T 3mq9_A 400 HLLQQELTEAQKG 412 (471)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 3345555544443
No 97
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=85.90 E-value=17 Score=31.73 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015431 256 EYNELLAAQLENQKIYYETLLQEAKEETEKIISEAVKKAIAQKLQKMQAKLDRCVREK 313 (407)
Q Consensus 256 ey~~lL~~qle~qr~~~E~~l~~l~~~~~~~l~~~~~~~~~~~l~~l~~~l~~~~~e~ 313 (407)
+...-|....+..|+-+..-+++++.+...- ...+...+.+.++.++.++.-...++
T Consensus 71 e~~~~l~~~~~~Lr~~l~kdlee~r~~l~P~-~~e~~~~~~~~~e~lr~~l~Py~~el 127 (185)
T 3r2p_A 71 EFWDNLEKETEGLRQEMSKDLEEVKAKVQPY-LDDFQKKWQEEMELYRQKVEPLRAEL 127 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555554222 23333344455555665655444433
No 98
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=85.84 E-value=5.6 Score=35.22 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 015431 252 AIVNEYNELLAAQLENQKIYYETL 275 (407)
Q Consensus 252 ~~~~ey~~lL~~qle~qr~~~E~~ 275 (407)
.+..+++.++.+.++..+.|.+..
T Consensus 55 ~l~~el~~l~~e~~~~l~~~~~~l 78 (191)
T 1nfn_A 55 QVTQELRALMDETMKELKAYKSEL 78 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777777766654433
No 99
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=85.75 E-value=22 Score=34.66 Aligned_cols=14 Identities=43% Similarity=0.622 Sum_probs=5.7
Q ss_pred HHHHHhHhHHHHhh
Q 015431 361 DLMAYLEAEKTLQQ 374 (407)
Q Consensus 361 dLm~~l~~~~~~~~ 374 (407)
|+..|-+-|+.+.+
T Consensus 177 D~e~ye~qqKQL~q 190 (390)
T 1deq_A 177 DLEDYKNQQKQLEQ 190 (390)
T ss_pred cHHHHHHHHHHHHh
Confidence 34444444444433
No 100
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.36 E-value=23 Score=36.28 Aligned_cols=13 Identities=8% Similarity=0.156 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 015431 351 KIQDSEAQLRDLM 363 (407)
Q Consensus 351 ~i~~Leeq~~dLm 363 (407)
++..+.+++..|+
T Consensus 566 e~~~~~~~~~~l~ 578 (597)
T 3oja_B 566 ETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 101
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=84.99 E-value=7.9 Score=30.12 Aligned_cols=59 Identities=19% Similarity=0.310 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 015431 298 KLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDL 362 (407)
Q Consensus 298 ~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dL 362 (407)
.++.|+.++........+|+.-|+.|....+.|..+-. .......+..|.+|..|+.++
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~~------~~~~~~ye~~i~~Lr~~i~~~ 68 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQGK------SRLGDLYEEEMRELRRQVDQL 68 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC------CCcHHHHHHHHHHHHHHHHHH
Confidence 46667777777666677777777777665555543311 112223445566666666554
No 102
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=83.98 E-value=23 Score=44.17 Aligned_cols=36 Identities=8% Similarity=0.070 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHHHHhH
Q 015431 332 AKISEIEEREKM---ALRAKDDKIQDSEAQLRDLMAYLE 367 (407)
Q Consensus 332 ~kl~~~~~~~~~---~~~~~~~~i~~Leeq~~dLm~~l~ 367 (407)
+++.+++++++. .+..+++++.+|++.+..|..-++
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~ 2052 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYA 2052 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444333 344445666667776666665544
No 103
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=83.30 E-value=1.8 Score=31.59 Aligned_cols=43 Identities=23% Similarity=0.412 Sum_probs=28.9
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhcccccc------CCCCCCcccc
Q 015431 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWT------DSSCPVCRYC 139 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~------~~~CP~Cr~~ 139 (407)
....|.||.+.= .-+.=-.|...||..|+.... ...||.|...
T Consensus 11 ~~~~C~vC~~~~----~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDGT----DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCCT----TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCCC----eEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 456799997531 113334788999999997653 2567777653
No 104
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=83.22 E-value=1.1 Score=36.04 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=45.3
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..++|+++.....+....+.|.+.++|..-...+||..|.
T Consensus 19 ~t~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~ 74 (116)
T 2fy1_A 19 TNEKMLKAVFGKHG-PISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLH 74 (116)
T ss_dssp CCHHHHHHHHHTSS-CCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCS
T ss_pred CCHHHHHHHHHhcC-CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 46678888888874 489999999543345668899999999999999999998764
No 105
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=83.09 E-value=0.64 Score=36.35 Aligned_cols=47 Identities=21% Similarity=0.510 Sum_probs=36.9
Q ss_pred CCCCCCCcccccccccccCCCceeeecC-CCccchhccccccC--CCCCCcccccC
Q 015431 89 ASSTEQPSCPVCLERLDQDTSGILTTIC-NHSFHCSCISKWTD--SSCPVCRYCQQ 141 (407)
Q Consensus 89 ~~~~e~~~C~iCle~~~~~~~~~~~~~C-~H~F~~~Cl~~w~~--~~CP~Cr~~~~ 141 (407)
+++..-..|-.|+-..+. ++.| +|-+|..|+.-... ..||+|.+...
T Consensus 23 ~s~~G~~nCKsCWf~~k~------LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLP 72 (99)
T 2ko5_A 23 ATHLGPQFCKSCWFENKG------LVECNNHYLCLNCLTLLLSVSNRCPICKMPLP 72 (99)
T ss_dssp CCCSCCCCCCSSCSCCSS------EEECSSCEEEHHHHHHTCSSSSEETTTTEECC
T ss_pred ccccCcccChhhccccCC------eeeecchhhHHHHHHHHHhhccCCcccCCcCC
Confidence 445567889999988774 3455 59999999988764 78999999875
No 106
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=83.04 E-value=25 Score=31.41 Aligned_cols=97 Identities=8% Similarity=0.165 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Q 015431 247 SSKVEAIVNEYNELLAAQLENQKIYYETLLQEAKEETEKIISEAVKKAIAQKLQKMQAKLDRCVREKKF----------- 315 (407)
Q Consensus 247 ~~k~~~~~~ey~~lL~~qle~qr~~~E~~l~~l~~~~~~~l~~~~~~~~~~~l~~l~~~l~~~~~e~~~----------- 315 (407)
..++.-+..+...-|....+..|.-+..-+++++.+... ....+...+.+.++.++.++.-...++..
T Consensus 60 ~~~l~p~~~e~~~~l~~~~~~lr~~l~kd~ee~r~~l~p-y~~el~~~~~~~~e~lr~~L~Py~~el~~~~~~~~e~Lr~ 138 (216)
T 2lem_A 60 QERLGPLTRDFWDNLEKETDWVRQEMNKDLEEVKQKVQP-YLDEFQKKWKEDVELYRQKASPQGAELQESARQKLQELQG 138 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-TCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCSCCSSCC
T ss_pred HHHhhhhHHHHHHHHhHHHHHHHHHHhccHHHHHHhhhH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 344555555555555555565555555555555544311 11223333344455555554433333211
Q ss_pred -----HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 015431 316 -----LDDLNENLLKNQEMWKAKISEIEEREKMA 344 (407)
Q Consensus 316 -----l~eln~~l~~~~~~l~~kl~~~~~~~~~~ 344 (407)
.+++...+..+.+.++..+.-..++++..
T Consensus 139 ~L~p~~e~lr~kl~~~~e~lk~~l~P~~ee~~~k 172 (216)
T 2lem_A 139 RLSPVAEEFRDRMRTHVDSLRTQLAPHSEQMRES 172 (216)
T ss_dssp SCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHH
Confidence 23555566666666666555555554443
No 107
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=83.03 E-value=1.5 Score=35.10 Aligned_cols=37 Identities=22% Similarity=0.471 Sum_probs=24.6
Q ss_pred CCCCcccccccccccCCCceeeecCCCccchhcccccc
Q 015431 92 TEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWT 129 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~ 129 (407)
.....|.||.+.-+.. .-+.=..|...||..|+....
T Consensus 5 ~~~~~C~~C~~~g~~~-~ll~C~~C~~~~H~~Cl~~~~ 41 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLL-DQFFCTTCGQHYHGMCLDIAV 41 (111)
T ss_dssp CCCSCBTTTCCCCCTT-TSEECSSSCCEECTTTTTCCC
T ss_pred CCCCCCcCCCCCCCCc-CCeECCCCCCCcChHHhCCcc
Confidence 3678899998763310 012235788999999997653
No 108
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=83.00 E-value=21 Score=32.52 Aligned_cols=24 Identities=13% Similarity=0.279 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 015431 250 VEAIVNEYNELLAAQLENQKIYYE 273 (407)
Q Consensus 250 ~~~~~~ey~~lL~~qle~qr~~~E 273 (407)
+.-+..++...+...+|.-|..+.
T Consensus 97 l~Py~~el~~~~~~~~eelr~~L~ 120 (243)
T 2a01_A 97 VQPYLDDFQKKWQEEMELYRQKVE 120 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 333333444444444444443333
No 109
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=82.75 E-value=1.4 Score=33.28 Aligned_cols=55 Identities=16% Similarity=0.272 Sum_probs=43.9
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..| ..|..++|++ +....+-...+.|.+.++|..-...+||..|.
T Consensus 20 ~t~~~l~~~f~~~-G~v~~~~i~~-~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 74 (92)
T 2dgv_A 20 FTWKMLKDKFNEC-GHVLYADIKM-ENGKSKGCGVVKFESPEVAERACRMMNGMKLS 74 (92)
T ss_dssp CCHHHHHHHHHTT-SCEEEEEEEE-SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBT
T ss_pred CCHHHHHHHHHhc-CCEEEEEEEc-cCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4567788888776 3688899998 44345667899999999999999999998765
No 110
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.57 E-value=1.8 Score=33.46 Aligned_cols=57 Identities=7% Similarity=0.070 Sum_probs=45.5
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcc-cc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQ-FN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~-f~ 57 (407)
+|..|+..++......|.+++|+++.....+-...+.|.+.++|..-...+||.. |.
T Consensus 21 ~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 78 (104)
T 2dhg_A 21 VDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLG 78 (104)
T ss_dssp CCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSS
T ss_pred CCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccC
Confidence 4667888888884456899999995433356678999999999999999999987 54
No 111
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=82.32 E-value=1.2 Score=33.15 Aligned_cols=56 Identities=20% Similarity=0.207 Sum_probs=43.7
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeC-CCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTD-GMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~-~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|.+++|+++. ....+-...+.|.+.++|..-...+||..|.
T Consensus 18 ~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 74 (87)
T 3bs9_A 18 ITTAAIAAAFAPFG-RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG 74 (87)
T ss_dssp CCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCHHHHHHHHHhcC-CEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 46678888888764 48899999852 2334567889999999999999999997654
No 112
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=81.83 E-value=1.3 Score=34.29 Aligned_cols=54 Identities=19% Similarity=0.269 Sum_probs=43.7
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..| . |..++|+++.. ..++-...+.|.+.++|..-. .+||..|.
T Consensus 27 ~t~~~l~~~F~~~-g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 81 (103)
T 2dng_A 27 TVQGDIDAIFKDL-S-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLG 81 (103)
T ss_dssp CCHHHHHHHTTTS-C-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCHHHHHHHHHhC-C-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeEC
Confidence 4678899999999 5 99999999532 234557889999999999999 89997663
No 113
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=81.79 E-value=16 Score=28.09 Aligned_cols=65 Identities=23% Similarity=0.324 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 015431 298 KLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDLMAYL 366 (407)
Q Consensus 298 ~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dLm~~l 366 (407)
.+.++...+.+....+..+..-+..|......|..++.+++++...-. ..-.+|+.++.||-..+
T Consensus 22 el~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~----~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 22 QMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELL----SKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 444444455544555555555555555555555555555555443322 33446788887775544
No 114
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.51 E-value=1.1 Score=34.78 Aligned_cols=55 Identities=18% Similarity=0.224 Sum_probs=44.9
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|-. |..++|+++ ....+....+.|.+.++|..-...+||..|.
T Consensus 27 ~t~~~l~~~F~~~G~-i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (103)
T 2d9p_A 27 IDDERLRKAFSPFGT-ITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 81 (103)
T ss_dssp CCHHHHHHTTTTTSC-EEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCHHHHHHHHHhcCC-EEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 466788888887654 889999995 4445778899999999999999999998763
No 115
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.31 E-value=1.3 Score=34.13 Aligned_cols=56 Identities=11% Similarity=0.279 Sum_probs=44.4
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..++|+++.....+-...+.|.+.++|......+||..|.
T Consensus 29 ~t~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 84 (100)
T 2do4_A 29 CTKEELEEICKAHG-TVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIK 84 (100)
T ss_dssp CCHHHHHHHHTTTS-CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESS
T ss_pred CCHHHHHHHHHhCC-CeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 46678888888764 588999998543334567899999999999999999998764
No 116
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=80.94 E-value=2.3 Score=32.95 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=44.8
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCccccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFNS 58 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~~ 58 (407)
+|..|+..++..|-. |..++|+++.....+-...+.|.+.++|..-...+||..|..
T Consensus 27 ~t~~~l~~~F~~~G~-i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 27 QSEEDVLRLFQPFGV-IDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp CCHHHHHHHHTTTSC-EEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred CCHHHHHHHHHhcCC-eEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 356778888877754 889999985433346678899999999999999999987654
No 117
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=80.87 E-value=20 Score=28.79 Aligned_cols=16 Identities=13% Similarity=0.055 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 015431 309 CVREKKFLDDLNENLL 324 (407)
Q Consensus 309 ~~~e~~~l~eln~~l~ 324 (407)
+.+++..++..+..+.
T Consensus 40 Lq~El~~lr~~~~~l~ 55 (111)
T 2v66_B 40 LEDDLSQTRAIKEQLH 55 (111)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 118
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.86 E-value=1.5 Score=34.02 Aligned_cols=55 Identities=18% Similarity=0.310 Sum_probs=44.1
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..|- .|..++|+++... .+-...+.|.+.++|..-...+||..|.
T Consensus 27 ~t~~~l~~~f~~~G-~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~ 81 (103)
T 2cq3_A 27 FRDPDLRQMFGQFG-KILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVE 81 (103)
T ss_dssp CCHHHHHHHGGGTS-CEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCHHHHHHHHHhcC-CeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 46678888888763 5888999985443 5667889999999999999999998764
No 119
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=80.80 E-value=1.7 Score=33.00 Aligned_cols=56 Identities=9% Similarity=0.064 Sum_probs=44.4
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..|- .|..++|+++.....+-...+.|.+.++|..-...+||..|.
T Consensus 28 ~~~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (95)
T 2ywk_A 28 VREEILYELFLQAG-PLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLY 83 (95)
T ss_dssp CCHHHHHHHHGGGS-CEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEET
T ss_pred CCHHHHHHHHHhcC-CEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 35678888888774 588899998543334668899999999999999999998764
No 120
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=80.51 E-value=49 Score=32.99 Aligned_cols=15 Identities=33% Similarity=0.337 Sum_probs=10.0
Q ss_pred HHHHHhHhHHHHhhh
Q 015431 361 DLMAYLEAEKTLQQL 375 (407)
Q Consensus 361 dLm~~l~~~~~~~~~ 375 (407)
|+-.|-+.|+.+.+.
T Consensus 175 D~~~Ye~~QKqLeQv 189 (491)
T 1m1j_A 175 DKEGYDNIQKHLTQA 189 (491)
T ss_dssp CTTTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh
Confidence 466676777777664
No 121
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.30 E-value=1.7 Score=33.54 Aligned_cols=55 Identities=13% Similarity=0.145 Sum_probs=44.6
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..++|+++... ++-...+.|.+.++|..-...+||..|.
T Consensus 27 ~t~~~l~~~F~~~G-~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~ 81 (103)
T 2cqi_A 27 VTEVLILQLFSQIG-PCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKIL 81 (103)
T ss_dssp CCHHHHHHHHHHHS-CEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCHHHHHHHHHhcC-CEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcC
Confidence 46678888888774 5889999995443 5668899999999999999999998764
No 122
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=79.73 E-value=1.6 Score=32.09 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=44.0
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeC-CCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTD-GMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~-~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..++++++. ....+-...+.|.+.++|..-...+||..|.
T Consensus 13 ~t~~~l~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 69 (83)
T 3md1_A 13 VDDETLRNAFKDFP-SYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN 69 (83)
T ss_dssp CCHHHHHHHHTTST-TEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCHHHHHHHHHhcC-CeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC
Confidence 46678888887764 68899999852 2334667899999999999999999998764
No 123
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=79.31 E-value=2.6 Score=33.82 Aligned_cols=66 Identities=18% Similarity=0.477 Sum_probs=40.3
Q ss_pred CCCCCcccccccccccCCCceeee---cCCCccchhccccc----cCCCCCCcccccCCCCccceeecccCCCccccccc
Q 015431 91 STEQPSCPVCLERLDQDTSGILTT---ICNHSFHCSCISKW----TDSSCPVCRYCQQQPEKSICFVCQTSENLWMCVIC 163 (407)
Q Consensus 91 ~~e~~~C~iCle~~~~~~~~~~~~---~C~H~F~~~Cl~~w----~~~~CP~Cr~~~~~~~~~~C~~C~~~~~l~~Cl~C 163 (407)
..+...|.+|.+. . ..+.- .|...||..|+.-- +...||.|. |..|+.... +.|..|
T Consensus 12 ~~~~~~C~~C~~~-G----~ll~CD~~~Cp~~fH~~Cl~L~~~P~g~W~Cp~c~----------C~~C~k~~~-~~C~~C 75 (107)
T 4gne_A 12 QMHEDYCFQCGDG-G----ELVMCDKKDCPKAYHLLCLNLTQPPYGKWECPWHQ----------CDECSSAAV-SFCEFC 75 (107)
T ss_dssp CSSCSSCTTTCCC-S----EEEECCSTTCCCEECTGGGTCSSCCSSCCCCGGGB----------CTTTCSBCC-EECSSS
T ss_pred CCCCCCCCcCCCC-C----cEeEECCCCCCcccccccCcCCcCCCCCEECCCCC----------CCcCCCCCC-cCcCCC
Confidence 3467789999842 1 13332 47789999998621 125677663 344555443 568888
Q ss_pred CccccccCC
Q 015431 164 GFVGCGRYK 172 (407)
Q Consensus 164 g~~~Cgr~~ 172 (407)
....|..+.
T Consensus 76 p~sfC~~c~ 84 (107)
T 4gne_A 76 PHSFCKDHE 84 (107)
T ss_dssp SCEECTTTC
T ss_pred Ccchhhhcc
Confidence 887775443
No 124
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=79.22 E-value=41 Score=31.30 Aligned_cols=13 Identities=8% Similarity=0.399 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 015431 295 IAQKLQKMQAKLD 307 (407)
Q Consensus 295 ~~~~l~~l~~~l~ 307 (407)
+.+.++.++.++.
T Consensus 64 ~~~~~eelr~kL~ 76 (273)
T 3s84_A 64 VNTQAEQLRRQLT 76 (273)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHH
Confidence 3334444444443
No 125
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.68 E-value=1.6 Score=34.48 Aligned_cols=56 Identities=11% Similarity=0.109 Sum_probs=44.6
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..|- .|..++|+++.....+-...+.|.+.++|..-...+||..|.
T Consensus 27 ~~~~~l~~~f~~~G-~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 82 (114)
T 2do0_A 27 VGWKKLKEVFSMAG-VVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLF 82 (114)
T ss_dssp CCHHHHHHHHTTTS-CEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCHHHHHHHHHhcC-CeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 35678888887764 688899998543334668899999999999999999998764
No 126
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.48 E-value=1.5 Score=34.61 Aligned_cols=57 Identities=19% Similarity=0.367 Sum_probs=45.4
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCccccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFNS 58 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~~ 58 (407)
+|..|+..++..|- .|..++|+++.....+-...+.|.+.+.|..-...+||..|..
T Consensus 37 ~t~~~l~~~F~~~G-~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 93 (114)
T 1x5o_A 37 MDEQELENMLKPFG-QVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKT 93 (114)
T ss_dssp CCHHHHHHTTTTTS-CEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCC
T ss_pred CCHHHHHHHHHhcC-CEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcC
Confidence 46678888887764 4889999995433346678999999999999999999998753
No 127
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=78.13 E-value=12 Score=27.83 Aligned_cols=40 Identities=8% Similarity=0.171 Sum_probs=26.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 015431 322 NLLKNQEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRD 361 (407)
Q Consensus 322 ~l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~d 361 (407)
.|..+.+.++.++..+..+....-.+..++|..||.+++.
T Consensus 11 ~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 11 RMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444555666666676666666555556678888887776
No 128
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=77.95 E-value=28 Score=34.69 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 015431 264 QLENQKIYYETLLQEAK 280 (407)
Q Consensus 264 qle~qr~~~E~~l~~l~ 280 (407)
+++..+..+++.+...+
T Consensus 364 ~l~~~~~~le~~~~~~~ 380 (487)
T 3oja_A 364 TLEQKKKALDEQVSNGR 380 (487)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 129
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=77.81 E-value=3.2 Score=34.70 Aligned_cols=57 Identities=23% Similarity=0.189 Sum_probs=45.5
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCccccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFNS 58 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~~ 58 (407)
+|..|+..++.+|-. |..++++++.....+....+.|.+.++|..-...+||..+..
T Consensus 107 ~t~~~l~~~F~~~G~-i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 163 (175)
T 3nmr_A 107 CTENDIRVMFSSFGQ-IEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTME 163 (175)
T ss_dssp CCHHHHHHHHGGGSC-EEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCT
T ss_pred CCHHHHHHHHHhCCC-EEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccC
Confidence 466788888887754 889999995443346678999999999999999999987654
No 130
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=77.71 E-value=1.5 Score=33.46 Aligned_cols=56 Identities=14% Similarity=0.280 Sum_probs=43.8
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..+++.|- .|..++|+++.. ...+....+.|.+.++|..-...+||..|.
T Consensus 14 ~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 70 (96)
T 2x1f_A 14 QTEEQILDLCSNVG-PVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLG 70 (96)
T ss_dssp CCHHHHHHHHHTTS-CEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCHHHHHHHHHhcC-CEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 35678888888774 588899998522 234667889999999999999999998764
No 131
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.30 E-value=2.5 Score=32.53 Aligned_cols=56 Identities=16% Similarity=0.235 Sum_probs=44.3
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeC-CCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTD-GMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~-~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..|- .|..++|+++. ...++-...+.|.+.++|..-...+||..|.
T Consensus 20 ~~~~~l~~~f~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (104)
T 1p1t_A 20 ATEEQLKDIFSEVG-PVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFS 76 (104)
T ss_dssp SCHHHHHHHHHTTS-CCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCS
T ss_pred CCHHHHHHHHHhcC-CeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 46678888888764 58899999853 2234667899999999999999999998774
No 132
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=77.20 E-value=2.2 Score=33.67 Aligned_cols=56 Identities=20% Similarity=0.203 Sum_probs=43.8
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeC-CCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTD-GMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~-~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..++|+++. ....+-...+.|.+.++|..-...+||..|.
T Consensus 27 ~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (115)
T 2dgo_A 27 ITTEDIKAAFAPFG-RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG 83 (115)
T ss_dssp CCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET
T ss_pred CCHHHHHHHHHhcC-CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 46678888888764 48899999852 2334667889999999999999999998754
No 133
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=77.09 E-value=2.2 Score=33.69 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=44.0
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeC-CCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTD-GMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~-~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..++|+++. ...++-...+.|.+.++|..-...+||..|.
T Consensus 37 ~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 93 (115)
T 2cpz_A 37 FGDQDLLQMFMPFG-NVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG 93 (115)
T ss_dssp CCHHHHHHHHGGGS-CCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCHHHHHHHHHhcC-CeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC
Confidence 46678888888764 48899999853 2334567889999999999999999998764
No 134
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=77.05 E-value=10 Score=25.62 Aligned_cols=36 Identities=8% Similarity=0.135 Sum_probs=19.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 015431 323 LLKNQEMWKAKISEIEEREKMALRAKDDKIQDSEAQ 358 (407)
Q Consensus 323 l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq 358 (407)
|..+.+.++.++..+..+....-.+..++|..||.+
T Consensus 10 Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 10 LGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444555555555555555444445566666654
No 135
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.65 E-value=3 Score=32.07 Aligned_cols=56 Identities=16% Similarity=0.242 Sum_probs=44.0
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..++|+++.. ...+-...+.|.+.++|..-...+||..|.
T Consensus 24 ~t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 1x5s_A 24 TNEQSLEQVFSKYG-QISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVD 80 (102)
T ss_dssp CCHHHHHHHHHHHS-CCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTT
T ss_pred CCHHHHHHHHHhcC-CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 46678888888874 588999998432 223557889999999999999999998764
No 136
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.57 E-value=1.8 Score=32.92 Aligned_cols=56 Identities=23% Similarity=0.310 Sum_probs=43.3
Q ss_pred CChhHHhHhhHHHHHhhhee-EEEee-CCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEM-RIVRT-DGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~-r~ir~-~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..+ +|+++ .....+-...+.|.+.++|..-...+||..|.
T Consensus 17 ~t~~~l~~~F~~~G-~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 74 (96)
T 1x5t_A 17 IDEKLLYDTFSAFG-VILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC 74 (96)
T ss_dssp CCHHHHHHHHHTTS-CBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET
T ss_pred CCHHHHHHHHHhcC-CeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 36678888888764 47778 99985 22334557899999999999999999998764
No 137
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.52 E-value=2.9 Score=31.95 Aligned_cols=58 Identities=16% Similarity=0.216 Sum_probs=44.3
Q ss_pred CChhHHhHhhHHHHHhhh-eeEEEeeC-CCCCeeEEEEeccChhhHhhHhhhcCCcccccC
Q 015431 1 MTYADFCQFCASFIQHIL-EMRIVRTD-GMDDQYSVLIRFDSQDSADKFYQHFNGRQFNSL 59 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~-~~r~ir~~-~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~~l 59 (407)
+|..|+..++..|-. |. +++|+++. ....+-...+.|.+.++|..-...+||..|..-
T Consensus 21 ~t~~~l~~~F~~~G~-i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (99)
T 2div_A 21 MDENFISRAFATMGE-TVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGA 80 (99)
T ss_dssp CCHHHHHHHHHHTTC-CCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSC
T ss_pred CCHHHHHHHHHHhCC-cceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCC
Confidence 466788888887754 55 99999853 223455689999999999999999999876543
No 138
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.32 E-value=1.7 Score=34.24 Aligned_cols=55 Identities=18% Similarity=0.310 Sum_probs=44.1
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..|- .|..++|+++.+. .+-...+.|.+.++|..-...+||..|.
T Consensus 41 ~te~~l~~~F~~~G-~i~~v~i~~~~~~-~kg~afV~f~~~~~A~~Ai~~l~g~~~~ 95 (109)
T 2err_A 41 FRDPDLRQMFGQFG-KILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVE 95 (109)
T ss_dssp CCHHHHHHHGGGTC-CCSCEEECCBTTB-CTTEEEEECCCSHHHHHHHHHHTTCEET
T ss_pred CCHHHHHHHHHhcC-CEEEEEEEECCCC-CceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 46678888888774 5888999985443 5667889999999999999999998764
No 139
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=75.81 E-value=36 Score=28.92 Aligned_cols=29 Identities=28% Similarity=0.371 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 015431 338 EEREKMALRAKDDKIQDSEAQLRDLMAYL 366 (407)
Q Consensus 338 ~~~~~~~~~~~~~~i~~Leeq~~dLm~~l 366 (407)
-..+...+..++..|..|++|+.+|..-+
T Consensus 117 ~~~L~~ql~e~~~~l~~lq~ql~~LK~v~ 145 (154)
T 2ocy_A 117 NKRLTEQLREKDTLLDTLTLQLKNLKKVM 145 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566677888999998876543
No 140
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=75.34 E-value=2 Score=32.89 Aligned_cols=56 Identities=14% Similarity=0.206 Sum_probs=43.5
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeC-CCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTD-GMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~-~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..++|+++. ....+-...+.|.+.++|..-...+||..|.
T Consensus 20 ~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (99)
T 1whw_A 20 SSEEDLEKLFSAYG-PLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ 76 (99)
T ss_dssp CCHHHHHHHHHTTS-CEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESS
T ss_pred CCHHHHHHHHHhcC-CEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 46678888887774 57889998853 2234557889999999999999999998764
No 141
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=75.32 E-value=21 Score=32.51 Aligned_cols=26 Identities=0% Similarity=0.192 Sum_probs=13.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 015431 318 DLNENLLKNQEMWKAKISEIEEREKM 343 (407)
Q Consensus 318 eln~~l~~~~~~l~~kl~~~~~~~~~ 343 (407)
++...+..+.+.++.++.-..++++.
T Consensus 147 elr~kl~~~veelk~~l~P~~ee~r~ 172 (243)
T 2a01_A 147 EMRDRARAHVDALRTHLAPYSDELRQ 172 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 55555555555555555544444443
No 142
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=75.18 E-value=2.8 Score=32.53 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=43.6
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..|- .|..++|+++.....+-...+.|.+.++|..-...+||..|.
T Consensus 41 ~t~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 96 (107)
T 3ulh_A 41 VSDADIQELFAEFG-TLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLD 96 (107)
T ss_dssp CCHHHHHHHHHTTS-CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCHHHHHHHHHhcC-CeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 35677777777653 578999998543334667899999999999999999998764
No 143
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=75.09 E-value=3.3 Score=33.32 Aligned_cols=46 Identities=26% Similarity=0.466 Sum_probs=29.2
Q ss_pred CCCcccccccccccC---CCce--eeecCCCccchhccccc---------cCCCCCCccc
Q 015431 93 EQPSCPVCLERLDQD---TSGI--LTTICNHSFHCSCISKW---------TDSSCPVCRY 138 (407)
Q Consensus 93 e~~~C~iCle~~~~~---~~~~--~~~~C~H~F~~~Cl~~w---------~~~~CP~Cr~ 138 (407)
..+.|.+|+..=... ..+. .=..|+..||..|+..+ ....||.|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~ 63 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKT 63 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCc
Confidence 467899998653211 1111 23478899999999642 2367888874
No 144
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=75.01 E-value=2.6 Score=34.90 Aligned_cols=56 Identities=16% Similarity=0.215 Sum_probs=45.9
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..|- .|.+++|+++....++-...+.|.+.++|......+||..+.
T Consensus 12 ~t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 67 (166)
T 3md3_A 12 ITEDILKQYFQVGG-PIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIE 67 (166)
T ss_dssp CCHHHHHHHHGGGS-CEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCHHHHHHHHHhcC-CeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccC
Confidence 46778888888774 589999998655556778999999999999999999998764
No 145
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=74.82 E-value=1.7 Score=35.12 Aligned_cols=43 Identities=21% Similarity=0.450 Sum_probs=26.7
Q ss_pred Cccccccccccc----CCCc--eeeecCCCccchhcccccc---------CCCCCCcc
Q 015431 95 PSCPVCLERLDQ----DTSG--ILTTICNHSFHCSCISKWT---------DSSCPVCR 137 (407)
Q Consensus 95 ~~C~iCle~~~~----~~~~--~~~~~C~H~F~~~Cl~~w~---------~~~CP~Cr 137 (407)
+.|.+|+..-.. +..+ +.=..|..+||..|+.... ...||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 579999865421 1111 2234788999999997641 25677775
No 146
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=74.79 E-value=33 Score=28.03 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=13.2
Q ss_pred HHHhhhHHHHHHHHHHHHHH
Q 015431 344 ALRAKDDKIQDSEAQLRDLM 363 (407)
Q Consensus 344 ~~~~~~~~i~~Leeq~~dLm 363 (407)
..+..+..+.+|+.++.|+-
T Consensus 105 ~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 105 KKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445567777887777764
No 147
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=74.31 E-value=3.3 Score=32.14 Aligned_cols=56 Identities=13% Similarity=0.233 Sum_probs=43.4
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..| ..|.+++|+++.. ...+-...+.|.+.++|..-...+||..|.
T Consensus 31 ~te~~L~~~F~~~-G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~ 87 (99)
T 4fxv_A 31 MTQDELRSLFSSI-GEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQ 87 (99)
T ss_dssp CCHHHHHHHHHTT-SCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCHHHHHHHHHhc-CCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4667888888776 4688999998432 224456789999999999999999998764
No 148
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=74.26 E-value=2.1 Score=32.57 Aligned_cols=58 Identities=22% Similarity=0.516 Sum_probs=36.0
Q ss_pred CcccccccccccCCCceeeecCCCccchhcccccc-CCCCCCcccccCCCCccceeecccCCCcccccccCccc
Q 015431 95 PSCPVCLERLDQDTSGILTTICNHSFHCSCISKWT-DSSCPVCRYCQQQPEKSICFVCQTSENLWMCVICGFVG 167 (407)
Q Consensus 95 ~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~-~~~CP~Cr~~~~~~~~~~C~~C~~~~~l~~Cl~Cg~~~ 167 (407)
..||.|...+..... +.+|..|-.... ...||-|...+. .|..|+.. .++|-.|+...
T Consensus 3 ~~CP~C~~~l~~~~~--------~~~C~~C~~~~~~~afCPeCgq~Le-----~lkACGA~--~yFC~~C~~Li 61 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--------TAHCETCAKDFSLQALCPDCRQPLQ-----VLKACGAV--DYFCQNGHGLI 61 (81)
T ss_dssp CCCSSSCSCCEECSS--------EEECTTTCCEEEEEEECSSSCSCCC-----EEEETTEE--EECCTTTTCCC
T ss_pred CCCCCCCCccccCCC--------ceECccccccCCCcccCcchhhHHH-----HHHhcCCc--CeeeccCCCEe
Confidence 679999888764221 344666765543 257888888664 36666655 45566665443
No 149
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=74.10 E-value=2.5 Score=33.60 Aligned_cols=55 Identities=18% Similarity=0.370 Sum_probs=44.0
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|-.|+..++..| ..|..++|+++... .+-...+.|.+.++|..-...+||..|.
T Consensus 17 ~te~~L~~~F~~~-G~v~~v~i~~d~~~-~kg~afV~f~~~~~A~~Ai~~l~~~~~~ 71 (115)
T 4f25_A 17 IDNKALYDTFSAF-GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 71 (115)
T ss_dssp CCHHHHHHHHGGG-SCEEEEEEEEETTE-EEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCHHHHHHHHhcc-CCEEEEEEeecCCC-CCceEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4667888888877 46889999995443 4656789999999999999999998664
No 150
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=73.96 E-value=2.6 Score=33.17 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=43.8
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..++|+++.. ...+-...+.|.+.++|......+||..|.
T Consensus 38 ~te~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~ 94 (108)
T 2jrs_A 38 ITEDMLRGIFEPFG-RIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA 94 (108)
T ss_dssp CCHHHHHHHHTTTS-CEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred CCHHHHHHHHHhcC-CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 46678888887774 588999998532 234567889999999999999999998764
No 151
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.82 E-value=2.7 Score=31.76 Aligned_cols=56 Identities=18% Similarity=0.254 Sum_probs=43.8
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..++|+++.. ...+-...+.|.+.++|..-...+||..|.
T Consensus 27 ~t~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 83 (95)
T 2cqc_A 27 TTERDLREVFSKYG-PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD 83 (95)
T ss_dssp CCHHHHHHHHHTTS-CEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCHHHHHHHHHhcC-CeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 35678888887764 588899998533 234667889999999999999999998764
No 152
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.74 E-value=2.6 Score=31.86 Aligned_cols=56 Identities=14% Similarity=0.207 Sum_probs=43.7
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..++|+++.. ...+-...+.|.+.++|..-...+||..|.
T Consensus 17 ~t~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (95)
T 2dnz_A 17 ITEDMLRGIFEPFG-KIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELA 73 (95)
T ss_dssp CCHHHHHHHHTTTS-CEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred CCHHHHHHHHHhcC-CEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 45678888887774 588899998532 234557889999999999999999998764
No 153
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=73.65 E-value=78 Score=31.76 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=9.9
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 015431 347 AKDDKIQDSEAQLRDLMAY 365 (407)
Q Consensus 347 ~~~~~i~~Leeq~~dLm~~ 365 (407)
....+|..|+..+..++..
T Consensus 179 ~l~~ki~~l~~~~~~~~~~ 197 (464)
T 1m1j_B 179 SLHKKIQKLENAIATQTDY 197 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344555566666555443
No 154
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.54 E-value=1.5 Score=32.55 Aligned_cols=56 Identities=16% Similarity=0.253 Sum_probs=42.8
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..++|+++.. ...+-...+.|.+.++|..-...+||..|.
T Consensus 17 ~t~~~l~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (85)
T 1x4e_A 17 TTDQDLVKLCQPYG-KIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ 73 (85)
T ss_dssp CCHHHHHTTSTTTS-CEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHhcC-CeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe
Confidence 46677888887764 688899998522 233556889999999999999999998653
No 155
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.22 E-value=2.7 Score=32.43 Aligned_cols=56 Identities=13% Similarity=0.214 Sum_probs=43.8
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeC-CCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTD-GMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~-~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..++|+++. ....+-...+.|.+.++|..-...+||..|.
T Consensus 27 ~t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 83 (103)
T 2cq0_A 27 TRETDLQELFRPFG-SISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD 83 (103)
T ss_dssp CCHHHHHTTSTTTC-CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEET
T ss_pred CCHHHHHHHHHhCC-CeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 45677888887774 58889999852 2234667899999999999999999998764
No 156
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=73.16 E-value=60 Score=40.58 Aligned_cols=20 Identities=5% Similarity=0.121 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHhHhHHHH
Q 015431 353 QDSEAQLRDLMAYLEAEKTL 372 (407)
Q Consensus 353 ~~Leeq~~dLm~~l~~~~~~ 372 (407)
+.|+.++.....-|+..+++
T Consensus 2059 ~~L~~e~~~~~~kl~rA~~L 2078 (3245)
T 3vkg_A 2059 EQIKTESSKVKNKVDRSIAL 2078 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555554444444443333
No 157
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=72.79 E-value=4.2 Score=31.38 Aligned_cols=56 Identities=14% Similarity=0.161 Sum_probs=43.6
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..| ..|..++|+++.. ..++-...+.|.+.++|..-...+||..|.
T Consensus 35 ~t~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 91 (106)
T 1p27_B 35 ATEEDIHDKFAEY-GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM 91 (106)
T ss_dssp CCHHHHHHHHGGG-SCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSS
T ss_pred CCHHHHHHHHhcc-CCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEEC
Confidence 3567788888777 4688899998432 234567889999999999999999998765
No 158
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=72.79 E-value=16 Score=41.33 Aligned_cols=6 Identities=33% Similarity=0.717 Sum_probs=2.5
Q ss_pred hhcccc
Q 015431 122 CSCISK 127 (407)
Q Consensus 122 ~~Cl~~ 127 (407)
..||.+
T Consensus 681 vRCIkP 686 (1184)
T 1i84_S 681 VRCIIP 686 (1184)
T ss_dssp CCEECC
T ss_pred eeeeCC
Confidence 344443
No 159
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=72.78 E-value=1.9 Score=31.85 Aligned_cols=56 Identities=11% Similarity=0.110 Sum_probs=42.9
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCC-CCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGM-DDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~-~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++.+|- .|..++|+++..+ ..+-...+.|.+.++|..-...+||..|.
T Consensus 19 ~~~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 75 (85)
T 3mdf_A 19 VDDKVLHAAFIPFG-DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF 75 (85)
T ss_dssp CCHHHHHHHHGGGS-CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCHHHHHHHHhccC-CEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 35677888887764 6888999885222 23446889999999999999999998764
No 160
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.74 E-value=1.9 Score=33.29 Aligned_cols=56 Identities=11% Similarity=0.187 Sum_probs=43.7
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..|- .|..++|+++.. ...+-...+.|.+.++|..-...+||..|.
T Consensus 25 ~t~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (103)
T 2dnm_A 25 TSPDSLRRVFEKYG-RVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD 81 (103)
T ss_dssp CCHHHHHHHHTTTS-CEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBT
T ss_pred CCHHHHHHHHHhcC-CEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 46678888888774 588899988432 224557889999999999999999998764
No 161
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=72.45 E-value=2.2 Score=32.52 Aligned_cols=56 Identities=11% Similarity=0.106 Sum_probs=43.9
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCC----CCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGM----DDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~----~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..++|+++... ..+....+.|.+.++|..-...+||..|.
T Consensus 17 ~t~~~l~~~F~~~G-~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (98)
T 2cpf_A 17 TTEETLKGVFSKVG-AIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD 76 (98)
T ss_dssp CCHHHHHHHHHTTS-CEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET
T ss_pred CCHHHHHHHHHhcC-CeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 46678888887764 4888999985431 34668899999999999999999998764
No 162
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=72.20 E-value=4 Score=35.69 Aligned_cols=45 Identities=24% Similarity=0.494 Sum_probs=29.9
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhcccccc------CCCCCCcccccC
Q 015431 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWT------DSSCPVCRYCQQ 141 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~------~~~CP~Cr~~~~ 141 (407)
....|.||.+- ..-+.--.|...||..|+.+.. ...||.|+....
T Consensus 3 ~~~~C~~C~~~----g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNG----GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCC----SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCC----CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 34679999843 1113334688999999987642 267888887543
No 163
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=72.19 E-value=3.6 Score=30.93 Aligned_cols=57 Identities=19% Similarity=0.244 Sum_probs=43.5
Q ss_pred CChhHHhHhhHHHHH-hhheeEEEeeC-CCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQ-HILEMRIVRTD-GMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~-~i~~~r~ir~~-~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|-. .|..++|+++. ....+-...+.|.+.++|..-...+||..|.
T Consensus 13 ~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~ 71 (90)
T 3p5t_L 13 TTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH 71 (90)
T ss_dssp CCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSS
T ss_pred CCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 356788888887753 69999999953 2234667889999999999999999998664
No 164
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=72.10 E-value=4.2 Score=32.43 Aligned_cols=55 Identities=18% Similarity=0.155 Sum_probs=42.8
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeC-CCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTD-GMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~-~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..|- .|..++|+++. ....+-...+.|.+.++|..-. .+||..|.
T Consensus 48 ~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 103 (124)
T 2jwn_A 48 STAQDLEAHFSSCG-SINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFR 103 (124)
T ss_dssp CCHHHHHHHHHTTS-CEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEET
T ss_pred CCHHHHHHHHHhcC-CEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeEC
Confidence 46678888888774 68899999852 2334667889999999999999 89998763
No 165
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=71.73 E-value=30 Score=26.15 Aligned_cols=28 Identities=18% Similarity=0.443 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015431 311 REKKFLDDLNENLLKNQEMWKAKISEIE 338 (407)
Q Consensus 311 ~e~~~l~eln~~l~~~~~~l~~kl~~~~ 338 (407)
..+..+..-|..|...+..|..++..+-
T Consensus 48 ~~~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 48 HQREELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344555555555555555555543
No 166
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=71.69 E-value=3.5 Score=31.70 Aligned_cols=48 Identities=15% Similarity=0.219 Sum_probs=37.2
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhh
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQ 49 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~ 49 (407)
+|..|+..++..| ..|..++|+++.....+-...+.|.+.++|..-..
T Consensus 21 ~t~~~l~~~F~~~-G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 21 MDETEIRSFFARY-GSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp CCHHHHHHHHGGG-SCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT
T ss_pred CCHHHHHHHHHhC-CCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh
Confidence 3567788888776 36889999995433356788999999999998888
No 167
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.64 E-value=2.6 Score=31.71 Aligned_cols=49 Identities=14% Similarity=0.325 Sum_probs=40.3
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|-. |.+++|++ + ...+.|.+.++|..-...+||..|.
T Consensus 21 ~t~~~l~~~F~~~G~-v~~~~~~~-~------~afV~f~~~~~a~~A~~~l~g~~~~ 69 (90)
T 2dnp_A 21 CTSQELRSLFERRGR-VIECDVVK-D------YAFVHMEKEADAKAAIAQLNGKEVK 69 (90)
T ss_dssp CCHHHHHHHHHHHSC-EEEEEECS-S------CEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCHHHHHHHHHcCCC-EEEEEEEC-C------EEEEEECCHHHHHHHHHHhCCCEEC
Confidence 467788888888754 88888887 2 6778999999999999999998764
No 168
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=71.58 E-value=5.3 Score=29.56 Aligned_cols=55 Identities=11% Similarity=0.118 Sum_probs=41.6
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeC-CCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTD-GMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~-~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..| ..|.+++++++. ....+-...+.|.+.++|..-. .+||..|.
T Consensus 18 ~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~ 73 (89)
T 3ucg_A 18 ATAEELEAHFHGC-GSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFR 73 (89)
T ss_dssp CCHHHHHHHHGGG-CCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEET
T ss_pred CCHHHHHHHHHhC-CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEEC
Confidence 3567788888776 358899999842 2234557889999999999998 99998763
No 169
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=71.55 E-value=22 Score=30.16 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHhHhHHHHhhhccccCCCCcEEee
Q 015431 349 DDKIQDSEAQLRDLMAYLEAEKTLQQLSISNEIKDGTVLP 388 (407)
Q Consensus 349 ~~~i~~Leeq~~dLm~~l~~~~~~~~~~~~~ei~~G~v~~ 388 (407)
++++..+.++.+.|.+.++.-+++ ..++||..|+|..
T Consensus 83 ~~ek~~r~e~k~~l~~ql~qv~~L---~lGsEv~qg~vE~ 119 (150)
T 4dci_A 83 AGKRSELEEQKRNLLQQQAQVREL---EMDQIVEQGQLES 119 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS---CTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC---CCcCEEeeceeeE
Confidence 335566788888888887775555 7889999999853
No 170
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=71.46 E-value=3.1 Score=37.21 Aligned_cols=44 Identities=27% Similarity=0.507 Sum_probs=28.7
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhcccccc------CCCCCCccccc
Q 015431 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWT------DSSCPVCRYCQ 140 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~------~~~CP~Cr~~~ 140 (407)
....|.||..-=+ -+.--.|...||..|+.+.. ...||.|+...
T Consensus 6 ~~~~C~~C~~~g~----ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNGGD----LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCCEE----EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCc----eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 4567999974311 12233688899999997642 26788887644
No 171
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=71.13 E-value=3.8 Score=29.42 Aligned_cols=55 Identities=15% Similarity=0.206 Sum_probs=41.5
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeC-CCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTD-GMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~-~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..++++++. ...++-...+.|.+.++|..... .||..|+
T Consensus 11 ~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~ 66 (75)
T 2mss_A 11 TTVEDVKHYFEQFG-KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEIN 66 (75)
T ss_dssp CCHHHHHHHHHTTS-CCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSS
T ss_pred CCHHHHHHHHHhcC-CEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEEC
Confidence 46678888888774 48889998853 23356678999999999988876 7877654
No 172
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=71.10 E-value=2.9 Score=29.87 Aligned_cols=36 Identities=25% Similarity=0.482 Sum_probs=23.4
Q ss_pred CCCCcccccccccccCCCceeeecCCCccchhcccc
Q 015431 92 TEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISK 127 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~ 127 (407)
.+...|++|...+++...-+.=-.|..-||..|+.-
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl 39 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKI 39 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTC
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCc
Confidence 467789999988754321122236777889888743
No 173
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=71.08 E-value=3.5 Score=33.07 Aligned_cols=56 Identities=14% Similarity=0.196 Sum_probs=43.7
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..|- .|..++|+++.....+-...+.|.+.++|..-...+||..|.
T Consensus 47 ~t~~~l~~~F~~~G-~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 102 (124)
T 2kt5_A 47 VSDADIQELFAEFG-TLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD 102 (124)
T ss_dssp CCHHHHHHHHHTTS-CCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESS
T ss_pred CCHHHHHHHHHhcC-CeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 35667777777764 588999998543334567899999999999999999998764
No 174
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.02 E-value=2.1 Score=29.94 Aligned_cols=33 Identities=21% Similarity=0.588 Sum_probs=22.9
Q ss_pred CCCCCcccccccccccCCCceeeecCCCccchhcccc
Q 015431 91 STEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISK 127 (407)
Q Consensus 91 ~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~ 127 (407)
......|.||...-. -+.=-.|...||..|+.+
T Consensus 6 ~~~~~~C~vC~~~g~----ll~Cd~C~~~~H~~Cl~p 38 (56)
T 2yql_A 6 SGHEDFCSVCRKSGQ----LLMCDTCSRVYHLDCLDP 38 (56)
T ss_dssp CSSCCSCSSSCCSSC----CEECSSSSCEECSSSSSS
T ss_pred CCCCCCCccCCCCCe----EEEcCCCCcceECccCCC
Confidence 346778999987421 133347888999999875
No 175
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=70.88 E-value=1.3 Score=34.27 Aligned_cols=54 Identities=17% Similarity=0.120 Sum_probs=42.8
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeC--CCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTD--GMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~--~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|-.|+..|+..|- |..++|+++. ....+-...+.|.+.++|..-. .+||..|.
T Consensus 31 ~t~~~l~~~F~~~G--i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~ 86 (100)
T 2j76_E 31 VTEESIKEFFRGLN--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG 86 (100)
T ss_dssp CSSSHHHHHSCSSC--EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBT
T ss_pred CCHHHHHHHHHhcC--CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEEC
Confidence 35678888888885 9999999853 2334557889999999999999 89998764
No 176
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.63 E-value=2.1 Score=32.92 Aligned_cols=56 Identities=11% Similarity=0.123 Sum_probs=43.2
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..| ..|..++|+++.. ...+-...+.|.+.++|..-...+||..|.
T Consensus 24 ~t~~~l~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 2cqb_A 24 VDDKVLHAAFIPF-GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF 80 (102)
T ss_dssp CCHHHHHHHHTTT-SCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET
T ss_pred CCHHHHHHHhhcc-CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4667888888776 4688899988422 234557889999999999999999998764
No 177
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=70.62 E-value=4.5 Score=30.86 Aligned_cols=56 Identities=16% Similarity=0.254 Sum_probs=43.4
Q ss_pred CChhHHhHhhHHHHHhhhe--------eEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILE--------MRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~--------~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..|- .|.. ++|+++.. ...+-...+.|.+.++|..-...+||..|.
T Consensus 25 ~t~~~l~~~F~~~G-~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 25 VTIESVADYFKQIG-IIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCHHHHHHHHTTTS-CBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCHHHHHHHHHHhC-CEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 35678888888775 4667 99998522 334667899999999999999999998764
No 178
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=70.62 E-value=6 Score=29.43 Aligned_cols=55 Identities=5% Similarity=0.173 Sum_probs=42.7
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..++|+++.. ...+-...+.|.+.+ |..-...+||..|.
T Consensus 13 ~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~ 68 (90)
T 2ki2_A 13 ATSEQVKELFSQFG-KVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFM 68 (90)
T ss_dssp SSHHHHTTTHHHHT-CCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCS
T ss_pred CCHHHHHHHHHhcC-CEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEEC
Confidence 35678888888774 588999998532 234667889999999 99999999998765
No 179
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=70.45 E-value=3.5 Score=31.20 Aligned_cols=35 Identities=23% Similarity=0.563 Sum_probs=25.2
Q ss_pred CCCCcccccccccccCCCceeee--cCCCccchhccccc
Q 015431 92 TEQPSCPVCLERLDQDTSGILTT--ICNHSFHCSCISKW 128 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~--~C~H~F~~~Cl~~w 128 (407)
...+.|.+|.+++.++ ..+.. .=.|.||..|-...
T Consensus 13 ~a~l~CtlC~erLEdt--HFVQCPsv~~HkFCFpCsr~s 49 (93)
T 2cs3_A 13 SGPLCCTICHERLEDT--HFVQCPSVPSHKFCFPCSRES 49 (93)
T ss_dssp CCSCCCSSSCSCCSST--TSEECSSCSSCEECHHHHHHH
T ss_pred CCeeEeecchhhhccC--ceeeCCCccCCeeeccccHHH
Confidence 4678999999999973 24432 23699999996554
No 180
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.44 E-value=3 Score=32.20 Aligned_cols=56 Identities=9% Similarity=0.048 Sum_probs=43.5
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeC-CCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTD-GMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~-~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..|- .|..++|+++. ....+-...+.|.+.++|..-...+||..|.
T Consensus 27 ~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (105)
T 1x5u_A 27 VSEPLLWELFLQAG-PVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY 83 (105)
T ss_dssp CCHHHHHHHHHTTS-CEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS
T ss_pred CCHHHHHHHHHhcC-CeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 46678888888874 58889998853 2234556889999999999999999998764
No 181
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.35 E-value=1.9 Score=32.65 Aligned_cols=56 Identities=18% Similarity=0.320 Sum_probs=42.7
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..++|+++.. ...+-...+.|.+.++|......+||..|.
T Consensus 28 ~t~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 84 (94)
T 2e5h_A 28 LTNNDLYRIFSKYG-KVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF 84 (94)
T ss_dssp SCHHHHHHHTTTTS-CEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET
T ss_pred CCHHHHHHHHHhcC-CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 35678888887764 488899988432 223446789999999999999999998764
No 182
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=70.30 E-value=5 Score=29.60 Aligned_cols=51 Identities=22% Similarity=0.390 Sum_probs=40.4
Q ss_pred CChhHHhHhhHHHH---H-------hhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFI---Q-------HILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~---~-------~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..|. . .|.++++.+ + +-...+.|.+.++|..-. .+||..|.
T Consensus 18 ~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~-~----kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 18 ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-D----KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp CCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS-S----SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCHHHHHHHHHHHhhhcccccCCCCcceEEEecC-C----CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 46678888888884 3 677788876 2 347889999999999999 99998764
No 183
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=70.29 E-value=5.7 Score=33.10 Aligned_cols=56 Identities=9% Similarity=0.191 Sum_probs=45.7
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCC---CCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGM---DDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~---~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..|- .|.+++|+++..+ .++-...+.|.+.++|......+||..+.
T Consensus 15 ~te~~l~~~F~~~G-~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 73 (175)
T 3nmr_A 15 WSEKDLRELFEQYG-AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVL 73 (175)
T ss_dssp CCHHHHHHHHHTTS-CEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHhCC-CEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEc
Confidence 46678888888875 5899999996544 35667899999999999999999998764
No 184
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.27 E-value=1.9 Score=33.42 Aligned_cols=54 Identities=17% Similarity=0.132 Sum_probs=43.0
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC--CCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG--MDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~--~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..|- |..++|+++.. ...+-...+.|.+.++|..-. .+||..|.
T Consensus 27 ~t~~~l~~~F~~~G--i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 82 (104)
T 1wi8_A 27 VTEESIKEFFRGLN--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG 82 (104)
T ss_dssp CCHHHHHHHTTTSC--EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEET
T ss_pred CCHHHHHHHHHHCC--ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeC
Confidence 46788999999984 99999998543 234556789999999999999 89998653
No 185
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=70.24 E-value=4.4 Score=28.84 Aligned_cols=43 Identities=23% Similarity=0.550 Sum_probs=26.8
Q ss_pred CCCCcccccccccccCCCceeeecCCCccchhcccccc------CCCCCCccc
Q 015431 92 TEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWT------DSSCPVCRY 138 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~------~~~CP~Cr~ 138 (407)
.....|.||.+.-. -+.=-.|...||..|+..-. ...||.|+.
T Consensus 7 ~~~~~C~vC~~~g~----ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 55 (61)
T 1mm2_A 7 HHMEFCRVCKDGGE----LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTC 55 (61)
T ss_dssp SSCSSCTTTCCCSS----CBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTT
T ss_pred CCCCcCCCCCCCCC----EEEcCCCCHHHcccccCCCcCcCCCCccCChhhcC
Confidence 35678999985311 12234688899999987532 245666654
No 186
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=70.20 E-value=7.6 Score=29.85 Aligned_cols=55 Identities=13% Similarity=0.154 Sum_probs=43.5
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQF 56 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f 56 (407)
+|..|+..++..|- .|..++|+++.. ...+-...+.|.+.++|..-...+||..+
T Consensus 25 ~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (106)
T 2dgp_A 25 LDEKDLKPLFEEFG-KIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 80 (106)
T ss_dssp CCHHHHHHHHHHHS-CCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHhcC-CeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcc
Confidence 46678888888874 588999998422 23455788999999999999999999875
No 187
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.14 E-value=4.1 Score=31.67 Aligned_cols=57 Identities=11% Similarity=0.154 Sum_probs=43.6
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCC--CCeeEEEEeccChhhHhhHhhhcC-C-cccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGM--DDQYSVLIRFDSQDSADKFYQHFN-G-RQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~--~~~y~vll~f~~~~~a~~f~~~~~-g-~~f~ 57 (407)
+|..|+..++..|-..|.+++|++.+.. ..+-...+.|.+.++|..-...+| | ..|.
T Consensus 20 ~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~ 80 (109)
T 2dis_A 20 KKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLW 80 (109)
T ss_dssp SCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBT
T ss_pred CCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceec
Confidence 4677889999988767999999833432 456688899999999999999885 3 4443
No 188
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=69.80 E-value=3.1 Score=32.45 Aligned_cols=56 Identities=9% Similarity=0.105 Sum_probs=43.1
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeC-CCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTD-GMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~-~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..| ..|..++|+++. ....+-...+.|.+..+|..-...+||..|.
T Consensus 38 ~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 94 (110)
T 1oo0_B 38 AQEDEIQEKFCDY-GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM 94 (110)
T ss_dssp CCHHHHHHHHGGG-SCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCHHHHHHHHHhc-CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3567788888777 358889998842 2224557889999999999999999998764
No 189
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=69.38 E-value=4.8 Score=28.62 Aligned_cols=32 Identities=28% Similarity=0.645 Sum_probs=22.1
Q ss_pred CCCCcccccccccccCCCceeeecCCCccchhcccc
Q 015431 92 TEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISK 127 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~ 127 (407)
.....|.||...-+ -+.=-.|...||..|+..
T Consensus 9 ~~~~~C~vC~~~g~----ll~CD~C~~~fH~~Cl~p 40 (61)
T 2l5u_A 9 DHQDYCEVCQQGGE----IILCDTCPRAYHMVCLDP 40 (61)
T ss_dssp CCCSSCTTTSCCSS----EEECSSSSCEEEHHHHCT
T ss_pred CCCCCCccCCCCCc----EEECCCCChhhhhhccCC
Confidence 35678999986311 122346788999999976
No 190
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=69.07 E-value=5.8 Score=32.29 Aligned_cols=56 Identities=18% Similarity=0.201 Sum_probs=44.3
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCC-CCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGM-DDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~-~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..++|+++..+ ..+-...+.|.+.++|..-...+||..|.
T Consensus 54 ~~~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 110 (139)
T 1u6f_A 54 VDEVQLRQLFERYG-PIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL 110 (139)
T ss_dssp CCHHHHHHHHHHHS-CEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECS
T ss_pred CCHHHHHHHHHhcC-CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 46678888888874 5889999985332 23667889999999999999999998764
No 191
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=68.75 E-value=3.3 Score=32.08 Aligned_cols=56 Identities=9% Similarity=0.171 Sum_probs=43.1
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeC--CCCCeeEEEEeccChhhHhhHhhhc-CCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTD--GMDDQYSVLIRFDSQDSADKFYQHF-NGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~--~~~~~y~vll~f~~~~~a~~f~~~~-~g~~f~ 57 (407)
+|..|+..++..|- .|..++|+++. ....+-...+.|.+.++|..-...+ ||..|.
T Consensus 27 ~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~ 85 (107)
T 2cph_A 27 ANQREIRELFSTFG-ELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY 85 (107)
T ss_dssp CCHHHHHHHHHTTS-CEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS
T ss_pred CCHHHHHHHHHccC-CeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC
Confidence 45677888887764 58889998851 2234557889999999999999999 888765
No 192
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=68.46 E-value=8.6 Score=33.98 Aligned_cols=23 Identities=9% Similarity=0.102 Sum_probs=10.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Q 015431 321 ENLLKNQEMWKAKISEIEEREKM 343 (407)
Q Consensus 321 ~~l~~~~~~l~~kl~~~~~~~~~ 343 (407)
..+..|.+.++.++.=..++++.
T Consensus 124 ~~l~~~~Eelr~~L~Py~eelr~ 146 (191)
T 1nfn_A 124 AMLGQSTEELRVRLASHLRKLRK 146 (191)
T ss_dssp HTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHH
Confidence 34444444555555444444433
No 193
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=68.33 E-value=2.5 Score=31.12 Aligned_cols=53 Identities=13% Similarity=0.187 Sum_probs=40.6
Q ss_pred hHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCccccc
Q 015431 4 ADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFNS 58 (407)
Q Consensus 4 ~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~~ 58 (407)
.|+..+++.|- .|..++|++..+ ..+-...+.|.+.++|..-...+||..|..
T Consensus 22 ~~l~~~F~~~G-~i~~v~i~~~~g-~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 74 (81)
T 2krb_A 22 NVIHKIFSKFG-KITNDFYPEEDG-KTKGYIFLEYASPAHAVDAVKNADGYKLDK 74 (81)
T ss_dssp HHHHHHHHTTC-CEEEEECCCBTT-BCCCEEEEEESSHHHHHHHHTTSSSCCCSS
T ss_pred HHHHHHHhhcC-CeEEEEecCCCC-cEeEEEEEEECCHHHHHHHHHHhcCcccCC
Confidence 56667776664 477888886433 346678999999999999999999987753
No 194
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.29 E-value=3.5 Score=32.85 Aligned_cols=53 Identities=11% Similarity=0.101 Sum_probs=41.6
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQF 56 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f 56 (407)
+|..|+..|+.+| .|..++|+++.....+-...+.|.+.++|..-. ..||..+
T Consensus 28 ~te~dl~~~F~~~--~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~ 80 (109)
T 2dnn_A 28 AMENDVRDFFHGL--RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLM 80 (109)
T ss_dssp CCHHHHHHHTTTS--CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEE
T ss_pred CCHHHHHHHhccC--CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeE
Confidence 3667999999999 799999998543334557889999999998877 6777654
No 195
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=67.89 E-value=4.3 Score=33.54 Aligned_cols=56 Identities=20% Similarity=0.253 Sum_probs=44.1
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeC-CCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTD-GMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~-~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..|- .|..++++++. ...++-...+.|.+.++|......+||..|.
T Consensus 14 ~~~~~l~~~f~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 70 (167)
T 1fxl_A 14 MTQEEFRSLFGSIG-EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQ 70 (167)
T ss_dssp CCHHHHHHHHHTTS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCHHHHHHHHHhcC-CeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 46678888888775 58899999953 2234457889999999999999999998764
No 196
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=67.87 E-value=55 Score=27.67 Aligned_cols=42 Identities=10% Similarity=0.047 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015431 298 KLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEE 339 (407)
Q Consensus 298 ~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~ 339 (407)
.+..+..++.++..++..=...++.+.+....++-++..++.
T Consensus 76 El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~ 117 (152)
T 3a7p_A 76 ELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQ 117 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444433332222333333344444444444433
No 197
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.64 E-value=3.8 Score=31.96 Aligned_cols=51 Identities=24% Similarity=0.342 Sum_probs=42.0
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..++|++. +-...+.|.+.++|......+||..|.
T Consensus 37 ~t~~~l~~~F~~~G-~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~ 87 (109)
T 1x4g_A 37 LTDQLMRQTFSPFG-QIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIE 87 (109)
T ss_dssp CCHHHHHHHHHHHS-CEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCHHHHHHHHHhcC-CeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 46778888888875 5889999983 337889999999999999999998664
No 198
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=67.58 E-value=3.1 Score=33.89 Aligned_cols=56 Identities=11% Similarity=0.100 Sum_probs=43.1
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeC-CCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTD-GMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~-~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..|- .|..++|+++. ...++-...+.|.+.++|..-...+||..|.
T Consensus 75 ~~~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 131 (140)
T 2ku7_A 75 VDDKVLHAAFIPFG-DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF 131 (140)
T ss_dssp CCHHHHHHHHGGGS-CEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET
T ss_pred CCHHHHHHHHHhcC-CEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 46678888887764 57888988842 2234667889999999999999999998664
No 199
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=67.54 E-value=23 Score=26.19 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=11.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHH
Q 015431 340 REKMALRAKDDKIQDSEAQLRD 361 (407)
Q Consensus 340 ~~~~~~~~~~~~i~~Leeq~~d 361 (407)
++...+..++..|++|+.++..
T Consensus 44 eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 44 ELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555556555543
No 200
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=67.01 E-value=4.2 Score=33.21 Aligned_cols=56 Identities=18% Similarity=0.254 Sum_probs=43.3
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..|- .|..++|+++.. ...+-...+.|.+.++|..-...+||..|.
T Consensus 58 ~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~ 114 (129)
T 2kxn_B 58 TTERDLREVFSKYG-PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD 114 (129)
T ss_dssp CCHHHHHHHHTTTS-CEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred CCHHHHHHHHHhcC-CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 46678888887764 488899998532 234557889999999999999999998764
No 201
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=66.76 E-value=4.9 Score=32.10 Aligned_cols=55 Identities=9% Similarity=0.142 Sum_probs=43.0
Q ss_pred CChhHHhHhhHHHHH--hhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCccc
Q 015431 1 MTYADFCQFCASFIQ--HILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQF 56 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~--~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f 56 (407)
+|..|+..|+..|-. .|..++|+++.....+-...+.|.+.++|..-.. .||..|
T Consensus 29 ~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~ 85 (118)
T 2db1_A 29 CSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESM 85 (118)
T ss_dssp CCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEE
T ss_pred CCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeE
Confidence 366788888888744 4899999985443356688999999999999888 888755
No 202
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=66.60 E-value=3.8 Score=31.40 Aligned_cols=51 Identities=20% Similarity=0.324 Sum_probs=40.2
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|.+++|++ ++-...+.|.+.++|......+||..|.
T Consensus 39 ~~~~~l~~~f~~~G-~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 89 (101)
T 2la4_A 39 ATEADLIPLFQNFG-FILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPFQ 89 (101)
T ss_dssp CCHHHHHHHHHTTS-CCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred cCHHHHHHHHHhCC-CEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 35677788877763 478888886 3447889999999999999999998764
No 203
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=66.46 E-value=29 Score=26.24 Aligned_cols=6 Identities=17% Similarity=0.523 Sum_probs=2.2
Q ss_pred HHHHHH
Q 015431 333 KISEIE 338 (407)
Q Consensus 333 kl~~~~ 338 (407)
++..++
T Consensus 34 ~i~~lE 39 (84)
T 1gk4_A 34 TIGRLQ 39 (84)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 204
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=66.08 E-value=5.2 Score=31.65 Aligned_cols=56 Identities=11% Similarity=0.117 Sum_probs=43.1
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..| ..|..++|+++.. ...+-...+.|.+.++|..-...+||..|.
T Consensus 18 ~te~~L~~~F~~~-G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~ 74 (110)
T 3s8s_A 18 VRETFLKDMCRKY-GEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM 74 (110)
T ss_dssp CCHHHHHHHHTTT-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCHHHHHHHHHhc-CCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3556777777665 4688999999543 234667889999999999999999998763
No 205
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=66.04 E-value=47 Score=26.61 Aligned_cols=11 Identities=18% Similarity=0.235 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 015431 351 KIQDSEAQLRD 361 (407)
Q Consensus 351 ~i~~Leeq~~d 361 (407)
.|++|+....|
T Consensus 57 ~iReLEq~NDD 67 (111)
T 2v66_B 57 YVRELEQANDD 67 (111)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhchH
Confidence 33344433333
No 206
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=66.03 E-value=98 Score=32.05 Aligned_cols=15 Identities=13% Similarity=0.255 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 015431 350 DKIQDSEAQLRDLMA 364 (407)
Q Consensus 350 ~~i~~Leeq~~dLm~ 364 (407)
.++..|+.|+.+|..
T Consensus 567 ~~~~~~~~ei~~l~~ 581 (592)
T 1f5n_A 567 KESRIMKNEIQDLQT 581 (592)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555543
No 207
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=65.91 E-value=19 Score=30.00 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=6.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHh
Q 015431 341 EKMALRAKDDKIQDSEAQLRDLMAYL 366 (407)
Q Consensus 341 ~~~~~~~~~~~i~~Leeq~~dLm~~l 366 (407)
+...+..++..|..|++|+.+|..-|
T Consensus 108 L~~ql~e~e~ll~~lq~QL~~LK~v~ 133 (135)
T 2e7s_A 108 LTEQLREKDMLLDTLTLQLKNLKKVM 133 (135)
T ss_dssp HHHTTTHHHHCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344445556777888888876544
No 208
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=65.86 E-value=2.6 Score=31.27 Aligned_cols=56 Identities=16% Similarity=0.279 Sum_probs=42.7
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCC--CeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMD--DQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~--~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..++|+++..+. .+-...+.|.+.++|..-...+||..|.
T Consensus 16 ~t~~~l~~~F~~~G-~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (88)
T 4a8x_A 16 VTKDHIMEIFSTYG-KIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID 73 (88)
T ss_dssp CCHHHHHHHHHTTS-CEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCHHHHHHHHHhCC-CEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC
Confidence 35677888877764 67888998854321 3457889999999999999999998764
No 209
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=65.75 E-value=8.8 Score=29.60 Aligned_cols=44 Identities=25% Similarity=0.571 Sum_probs=28.3
Q ss_pred CCCCCcccccccccccCCCceeeecCCCccchhcccccc------CCCCCCccc
Q 015431 91 STEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWT------DSSCPVCRY 138 (407)
Q Consensus 91 ~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~------~~~CP~Cr~ 138 (407)
......|.||..--+ -+.--.|.-.||..|+.+-. ...||.|..
T Consensus 22 d~n~~~C~vC~~~g~----LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 22 DDSATICRVCQKPGD----LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp SSSSSCCSSSCSSSC----CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred CCCCCcCcCcCCCCC----EEECCCCCCceecccCCCCCCCCcCCCcCCccccC
Confidence 346678999986421 12334677889999996632 245666654
No 210
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.72 E-value=6.3 Score=30.35 Aligned_cols=55 Identities=5% Similarity=0.191 Sum_probs=41.8
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeC-CCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTD-GMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~-~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..|- .|..++|+++. ....+-...+.|.+.++|...... ||..|.
T Consensus 28 ~t~~~l~~~F~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~ 83 (105)
T 2dh8_A 28 TTQETLRSYFSQYG-EVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD 83 (105)
T ss_dssp CCHHHHHHHHHTTS-CEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEET
T ss_pred CCHHHHHHHHHhcC-CeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeEC
Confidence 46678888887764 68889999952 223455788999999999999888 887654
No 211
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=65.70 E-value=1.1e+02 Score=30.22 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=13.3
Q ss_pred hhhHHHHHHHHHHHHHHHHh
Q 015431 347 AKDDKIQDSEAQLRDLMAYL 366 (407)
Q Consensus 347 ~~~~~i~~Leeq~~dLm~~l 366 (407)
..+.+|..|+.++..|+...
T Consensus 116 ~~~~~i~~l~~~i~~l~~~~ 135 (409)
T 1m1j_C 116 MNSNKITQLKQKIAQLESHC 135 (409)
T ss_dssp HHHHHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHHHHHHHHh
Confidence 34456777888887777544
No 212
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=65.61 E-value=2.9 Score=30.66 Aligned_cols=38 Identities=24% Similarity=0.518 Sum_probs=27.2
Q ss_pred CcccccccccccCCCceeeecCCCccchhccccccCCCCCCcccccC
Q 015431 95 PSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQQ 141 (407)
Q Consensus 95 ~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~ 141 (407)
|.|+.|...+..+ ..+..-+..||..| ..|..|...+.
T Consensus 1 p~C~~C~~~I~~~---~~v~a~~~~~H~~C------F~C~~C~~~L~ 38 (76)
T 1iml_A 1 PKCPKCDKEVYFA---ERVTSLGKDWHRPC------LKCEKCGKTLT 38 (76)
T ss_dssp CBCTTTSSBCCGG---GEEEETTEEEETTT------CBCTTTCCBCC
T ss_pred CcCCCCCCEEECc---eEEEECCccccCCC------CCccccCccCC
Confidence 5799999887632 22334488899999 57888888765
No 213
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=65.50 E-value=3.6 Score=31.24 Aligned_cols=51 Identities=16% Similarity=0.154 Sum_probs=40.5
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHF 51 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~ 51 (407)
+|..|+..++.+|-..|.++||+++.. ..++-...+.|.+.++|..-....
T Consensus 13 ~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~ 64 (91)
T 2lxi_A 13 ATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEAN 64 (91)
T ss_dssp CCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhc
Confidence 467889999999876799999998532 345667889999999998877654
No 214
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=65.48 E-value=3.3 Score=32.77 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=42.4
Q ss_pred CChhHHhHhhHHHHHhh-heeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHI-LEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i-~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..| ..| ..++|+++.....+-...+.|.+.++|..-... ||..|.
T Consensus 27 ~t~~~l~~~F~~~-g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~ 82 (114)
T 2cpy_A 27 ITKMDVLQFLEGI-PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLN 82 (114)
T ss_dssp SCHHHHHHHTTTS-CCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEET
T ss_pred CCHHHHHHHHHhC-CCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccC
Confidence 4667889999888 567 789999854333456788999999999998877 886553
No 215
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=65.39 E-value=54 Score=28.34 Aligned_cols=25 Identities=0% Similarity=0.213 Sum_probs=12.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Q 015431 318 DLNENLLKNQEMWKAKISEIEEREK 342 (407)
Q Consensus 318 eln~~l~~~~~~l~~kl~~~~~~~~ 342 (407)
++...+..|.+.++..+.=..++++
T Consensus 148 ~lr~~l~~~~e~lk~~l~Py~ee~k 172 (185)
T 3r2p_A 148 EMRDRARAHVDALRTHLAPYSDELR 172 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3444555555555555544444433
No 216
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.35 E-value=3.7 Score=31.92 Aligned_cols=37 Identities=16% Similarity=0.426 Sum_probs=23.7
Q ss_pred CCCCCCcccccccccccCCCceeeecCCCccchhcccc
Q 015431 90 SSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISK 127 (407)
Q Consensus 90 ~~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~ 127 (407)
...+...|.||...-+. ..-+.=-.|...||..|+.+
T Consensus 12 ~~~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~P 48 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLP 48 (92)
T ss_dssp CCCCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSS
T ss_pred hccCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCC
Confidence 34567789999876432 11122236788899999864
No 217
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=65.24 E-value=1.2e+02 Score=30.48 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=16.3
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhHhHH
Q 015431 343 MALRAKDDKIQDSEAQLRDLMAYLEAEK 370 (407)
Q Consensus 343 ~~~~~~~~~i~~Leeq~~dLm~~l~~~~ 370 (407)
..++.++..+..|...|..|...+..+.
T Consensus 168 ~~i~~L~~~~~~l~~ki~~l~~~~~~~~ 195 (464)
T 1m1j_B 168 SSLRVLRAVIDSLHKKIQKLENAIATQT 195 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444566666777766666665543
No 218
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=64.90 E-value=6.2 Score=32.89 Aligned_cols=56 Identities=13% Similarity=0.176 Sum_probs=44.2
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeC-CCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTD-GMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~-~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++.+| ..|..++++++. ....+....+.|.+.++|..-...+||..|.
T Consensus 106 ~t~~~l~~~f~~~-G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 162 (172)
T 2g4b_A 106 LNDDQVKELLTSF-GPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG 162 (172)
T ss_dssp CCHHHHHHHHHTT-SCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEET
T ss_pred CCHHHHHHHHHhc-CCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEEC
Confidence 3567788888876 358899999952 2334667999999999999999999998764
No 219
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=64.84 E-value=39 Score=24.79 Aligned_cols=35 Identities=14% Similarity=0.406 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015431 248 SKVEAIVNEYNELLAAQLENQKIYYETLLQEAKEE 282 (407)
Q Consensus 248 ~k~~~~~~ey~~lL~~qle~qr~~~E~~l~~l~~~ 282 (407)
.-+..+...|..+...--++--.+|..+++++...
T Consensus 9 ~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~ 43 (77)
T 3trt_A 9 AAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEA 43 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33566666777777665555556777777766544
No 220
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=64.58 E-value=41 Score=25.01 Aligned_cols=10 Identities=40% Similarity=0.551 Sum_probs=0.9
Q ss_pred HHHHHHHHHH
Q 015431 351 KIQDSEAQLR 360 (407)
Q Consensus 351 ~i~~Leeq~~ 360 (407)
+|.+|+++++
T Consensus 66 ri~elEeElk 75 (77)
T 2w83_C 66 KNRELEEELR 75 (77)
T ss_dssp HC--------
T ss_pred HHHHHHHHHh
Confidence 4444544443
No 221
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=64.43 E-value=2.9 Score=31.38 Aligned_cols=50 Identities=10% Similarity=0.213 Sum_probs=41.8
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..| .|..++|.+ ++-...+.|.+.++|..-...+||..|.
T Consensus 17 ~t~~~l~~~F~~~--~v~~~~i~~-----~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 66 (88)
T 1wg1_A 17 SNCQEVHDLLKDY--DLKYCYVDR-----NKRTAFVTLLNGEQAQNAIQMFHQYSFR 66 (88)
T ss_dssp CCHHHHHHHTCSS--CCCCEEEEG-----GGTEEEECCSCHHHHHHHHHHHTTEEET
T ss_pred CCHHHHHHHHhhC--CeEEEEEeC-----CCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 4677889999999 799999863 4447889999999999999999998764
No 222
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=64.42 E-value=60 Score=30.71 Aligned_cols=19 Identities=21% Similarity=0.487 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 015431 253 IVNEYNELLAAQLENQKIY 271 (407)
Q Consensus 253 ~~~ey~~lL~~qle~qr~~ 271 (407)
+..+++.++.+-++.-..|
T Consensus 64 l~kel~~l~~~~~~el~~y 82 (307)
T 2l7b_A 64 VTQELRALMDETMKELKAY 82 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455555444444333
No 223
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=64.31 E-value=4.2 Score=31.42 Aligned_cols=55 Identities=7% Similarity=0.188 Sum_probs=44.4
Q ss_pred CChhHHhHhhHHHHH-hhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCcc
Q 015431 1 MTYADFCQFCASFIQ-HILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQ 55 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~-~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~ 55 (407)
+|..|+..++++|-. .+.++||+++.. ..++-...+.|.+.++|..-...+||..
T Consensus 21 ~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~ 77 (95)
T 2lkz_A 21 TVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLH 77 (95)
T ss_dssp CCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSS
T ss_pred CCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCC
Confidence 467889999999875 688999999532 2345567899999999999999999874
No 224
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=64.28 E-value=4.3 Score=35.76 Aligned_cols=46 Identities=22% Similarity=0.433 Sum_probs=30.0
Q ss_pred CcccccccccccCCCceee---ecCCCccchhcccccc-------------CCCCCCccccc
Q 015431 95 PSCPVCLERLDQDTSGILT---TICNHSFHCSCISKWT-------------DSSCPVCRYCQ 140 (407)
Q Consensus 95 ~~C~iCle~~~~~~~~~~~---~~C~H~F~~~Cl~~w~-------------~~~CP~Cr~~~ 140 (407)
..||||...++++..+... -.|..-||..|+.--. ...||.|+...
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 4699999988864321122 3677889999975421 35677777643
No 225
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=64.27 E-value=7.1 Score=32.14 Aligned_cols=57 Identities=23% Similarity=0.283 Sum_probs=43.9
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCccccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQFNS 58 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f~~ 58 (407)
+|..|+..++..|- .|..++++++.. ..++-...+.|.+.++|..-...+||..|..
T Consensus 100 ~t~~~l~~~f~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 157 (167)
T 1fxl_A 100 MTQKELEQLFSQYG-RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 157 (167)
T ss_dssp CCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCHHHHHHHHHhcC-CEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCC
Confidence 35677777777763 588899998532 2235678999999999999999999997754
No 226
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.24 E-value=3.4 Score=32.42 Aligned_cols=56 Identities=14% Similarity=0.284 Sum_probs=42.7
Q ss_pred CChhHHhHhhHHHHHhhh--------eeEEEee-CCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHIL--------EMRIVRT-DGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~--------~~r~ir~-~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..|-. |. .++|+++ .....+-...+.|.+.++|..-...+||..|.
T Consensus 27 ~t~~~l~~~F~~~G~-i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 27 VTLDDLADFFKQCGV-VKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCHHHHHHHHTTTSC-BCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCHHHHHHHHHhcCC-EeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 356788888888754 44 6899885 22234557899999999999999999998764
No 227
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=63.97 E-value=5.3 Score=31.38 Aligned_cols=54 Identities=11% Similarity=0.226 Sum_probs=42.0
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..| ..|..++|++ ++. ++-...+.|.+..+|..-...+||..|.
T Consensus 20 ~t~~~l~~~F~~~-G~v~~v~i~~-~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~ 73 (115)
T 3lqv_A 20 ITAEEMYDIFGKY-GPIRQIRVGN-TPE-TRGTAYVVYEDIFDAKNAVDHLSGFNVS 73 (115)
T ss_dssp CCHHHHHHHHHTT-SCEEEEEEEC-STT-TTTCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCHHHHHHHHHhc-CCeEEEEEee-CCC-CCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3567788887776 3578899998 443 2446789999999999999999998764
No 228
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=63.81 E-value=30 Score=25.85 Aligned_cols=26 Identities=19% Similarity=0.104 Sum_probs=16.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhHh
Q 015431 343 MALRAKDDKIQDSEAQLRDLMAYLEA 368 (407)
Q Consensus 343 ~~~~~~~~~i~~Leeq~~dLm~~l~~ 368 (407)
.++..++.+|..|+.|++.|..-+.+
T Consensus 35 ~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 35 EALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556777788888887766554
No 229
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=63.68 E-value=6.3 Score=32.40 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=43.6
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeC-CCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTD-GMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~-~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++.+| ..|..++++++. ...++-...+.|.+.++|..-...+||..|+
T Consensus 99 ~t~~~l~~~f~~~-G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 155 (166)
T 3md3_A 99 VDDETLRNAFKDF-PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN 155 (166)
T ss_dssp CCHHHHHHHHTTS-TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCHHHHHHHHhcc-CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC
Confidence 4567788887765 457889999852 2334667899999999999999999998764
No 230
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.54 E-value=6.9 Score=28.86 Aligned_cols=41 Identities=17% Similarity=0.429 Sum_probs=30.4
Q ss_pred CCCCCCcccccccccccCCCceeeecCCCccchhccccccCCCCCCccccc
Q 015431 90 SSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQ 140 (407)
Q Consensus 90 ~~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~ 140 (407)
+....+.|+.|...+.. ..+..-+..||..| ..|-.|...+
T Consensus 11 ~~~~~~~C~~C~~~I~~----~~~~a~~~~~H~~C------F~C~~C~~~L 51 (79)
T 1x62_A 11 NAQKLPMCDKCGTGIVG----VFVKLRDRHRHPEC------YVCTDCGTNL 51 (79)
T ss_dssp CCCCCCCCSSSCCCCCS----SCEECSSCEECTTT------TSCSSSCCCH
T ss_pred CCCCCCccccCCCCccC----cEEEECcceeCcCc------CeeCCCCCCC
Confidence 34567999999998874 23455678899998 4788887765
No 231
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=63.27 E-value=44 Score=24.86 Aligned_cols=38 Identities=26% Similarity=0.257 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 015431 305 KLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREK 342 (407)
Q Consensus 305 ~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~ 342 (407)
+++.+..|...++.-..++......+..++.+++++++
T Consensus 38 rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 38 KVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344444444444444445555566666666554
No 232
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=63.07 E-value=3.2 Score=30.03 Aligned_cols=32 Identities=28% Similarity=0.632 Sum_probs=22.0
Q ss_pred CCCCcccccccccccCCCceeeecCCCccchhcccc
Q 015431 92 TEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISK 127 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~ 127 (407)
.....|.||.+--+ -+.=-.|...||..|+.+
T Consensus 6 ~~~~~C~vC~~~g~----ll~CD~C~~~fH~~Cl~p 37 (66)
T 1xwh_A 6 KNEDECAVCRDGGE----LICCDGCPRAFHLACLSP 37 (66)
T ss_dssp SCCCSBSSSSCCSS----CEECSSCCCEECTTTSSS
T ss_pred CCCCCCccCCCCCC----EEEcCCCChhhcccccCC
Confidence 35678999986421 133346888999999875
No 233
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.99 E-value=7.2 Score=30.46 Aligned_cols=55 Identities=25% Similarity=0.359 Sum_probs=41.7
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|..+|- .|.+++|+++.....+-...+.|.+.++|..... .||..|.
T Consensus 23 ~te~~L~~~F~~~G-~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~ 77 (103)
T 1s79_A 23 ATLDDIKEWLEDKG-QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYK 77 (103)
T ss_dssp CCHHHHHHHHHTSS-CEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCT
T ss_pred CCHHHHHHHHhhcC-CEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEEC
Confidence 35678888888774 5889999985433456678899999999999887 6776554
No 234
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=62.98 E-value=4.7 Score=30.86 Aligned_cols=52 Identities=10% Similarity=0.174 Sum_probs=42.4
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..++|+++ .+-...+.|.+.++|..-...+||..|.
T Consensus 12 ~t~~~l~~~F~~~G-~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~ 63 (101)
T 2hvz_A 12 AGKGELERAFSYYG-PLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVIC 63 (101)
T ss_dssp CSHHHHHHHHHHHC-CCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSS
T ss_pred CCHHHHHHHHHhcC-CeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeEC
Confidence 46678888888875 5889999984 3447889999999999999999998654
No 235
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.93 E-value=4.4 Score=29.83 Aligned_cols=51 Identities=22% Similarity=0.279 Sum_probs=39.9
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhc-CCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHF-NGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~-~g~~f~ 57 (407)
+|..|+..++..|-. |..+++++. +-...+.|.+.++|..-...+ ||..|.
T Consensus 24 ~t~~~l~~~f~~~G~-i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~ 75 (85)
T 2ytc_A 24 ITETDLRNHFYQFGE-IRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVN 75 (85)
T ss_dssp SCHHHHHHHHHTTSC-EEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEET
T ss_pred CCHHHHHHHHHhCCC-EeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeEC
Confidence 466778888877744 888999982 337889999999999999887 877654
No 236
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.86 E-value=4.8 Score=30.66 Aligned_cols=55 Identities=11% Similarity=0.147 Sum_probs=41.5
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..++|+++.. ...+-...+.|.+.++|..-.. +||..|.
T Consensus 22 ~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~ 77 (99)
T 2dgs_A 22 CGETELREYFKKFG-VVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIM 77 (99)
T ss_dssp CCHHHHHHHHSSSS-CEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSS
T ss_pred CCHHHHHHHHHhcC-CeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEEC
Confidence 45677888887763 688899998422 2345678999999999999987 8887664
No 237
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.03 E-value=7.7 Score=29.59 Aligned_cols=53 Identities=13% Similarity=0.138 Sum_probs=40.4
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..| ..+++++... ...+-...+.|.+.++|..-...+||..|.
T Consensus 27 ~t~~~l~~~F~~~----~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 2fc8_A 27 TTEETLKESFDGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 80 (102)
T ss_dssp CCHHHHHHTSTTC----SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred cCHHHHHHHhcCC----eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 4567788887754 5789998432 234557889999999999999999998664
No 238
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=61.77 E-value=3.9 Score=32.32 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=42.4
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..|- .|..++|+++.. ...+-...+.|.+.++|......+||..|.
T Consensus 52 ~t~~~l~~~F~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 108 (118)
T 2khc_A 52 FTDTDLASTFLPFG-NVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG 108 (118)
T ss_dssp CCHHHHHHHTTTSC-EEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET
T ss_pred CCHHHHHHHHHhcC-CEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 35667777777663 578899988422 234557889999999999999999998764
No 239
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.71 E-value=5.1 Score=31.57 Aligned_cols=54 Identities=13% Similarity=0.131 Sum_probs=41.2
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQF 56 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f 56 (407)
+|..|+..|+..|- .|..++|+++.. ...+-...+.|.+.++|......+|+ .|
T Consensus 29 ~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~ 83 (116)
T 2cqd_A 29 TTDASLRKYFEGFG-DIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-II 83 (116)
T ss_dssp CCHHHHHHHHHTTS-CEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EE
T ss_pred CCHHHHHHHHHhCC-CeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cC
Confidence 46678888888774 488899998522 23455788899999999999999887 44
No 240
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=61.50 E-value=12 Score=28.11 Aligned_cols=42 Identities=19% Similarity=0.381 Sum_probs=30.7
Q ss_pred CCCCCCcccccccccccCCCceeeecCCCccchhccccccCCCCCCcccccC
Q 015431 90 SSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQQ 141 (407)
Q Consensus 90 ~~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~ 141 (407)
.....+.|+.|...+.. ..+..-+..||..| ..|-.|...+.
T Consensus 21 ~~~~~~~C~~C~~~I~~----~~~~a~~~~~H~~C------F~C~~C~~~L~ 62 (89)
T 1x64_A 21 SAQRMPLCDKCGSGIVG----AVVKARDKYRHPEC------FVCADCNLNLK 62 (89)
T ss_dssp CCCSCCBCTTTCCBCCS----CCEESSSCEECTTT------CCCSSSCCCTT
T ss_pred CCCcCCCcccCCCEecc----cEEEECCceECccC------CEecCCCCCCC
Confidence 34567899999998874 23445678899998 46888877654
No 241
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=61.26 E-value=6 Score=34.39 Aligned_cols=56 Identities=13% Similarity=0.167 Sum_probs=43.4
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeC-CCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTD-GMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~-~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..|- .|.+++|+++. ....+-...+.|.+.++|......+||..|.
T Consensus 40 ~t~~~l~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 96 (216)
T 2qfj_A 40 LGEDTIRQAFAPFG-PIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLG 96 (216)
T ss_dssp CCHHHHHHHHGGGS-CEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC
T ss_pred CCHHHHHHHHHhCC-CEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeC
Confidence 46678888888773 58889999843 2234567899999999999999999998764
No 242
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=61.10 E-value=7.4 Score=32.43 Aligned_cols=56 Identities=11% Similarity=0.097 Sum_probs=43.9
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|-. |..++|+++.. ...+-...+.|.+.++|..-...+||..|.
T Consensus 51 ~t~~~l~~~F~~~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 107 (156)
T 1h2v_Z 51 TTEEQIYELFSKSGD-IKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD 107 (156)
T ss_dssp CCHHHHHHHHGGGSC-EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET
T ss_pred CCHHHHHHHHHhcCC-eEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 466788888887754 88999998532 224567899999999999999999998763
No 243
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=61.03 E-value=54 Score=28.43 Aligned_cols=30 Identities=10% Similarity=0.141 Sum_probs=18.8
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHhHhHHHHhhh
Q 015431 344 ALRAKDDKIQDSEAQLRDLMAYLEAEKTLQQL 375 (407)
Q Consensus 344 ~~~~~~~~i~~Leeq~~dLm~~l~~~~~~~~~ 375 (407)
+++++.++|.+|+.++....+-+ +.++.+.
T Consensus 114 kI~aL~~Ei~~Lr~qL~~~R~k~--~~em~Ke 143 (175)
T 3lay_A 114 KINAVAKEMESLGQKLDEQRVKR--DVAMAQA 143 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh
Confidence 45555667888888888765443 4445443
No 244
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=60.94 E-value=8.7 Score=29.35 Aligned_cols=34 Identities=21% Similarity=0.562 Sum_probs=23.0
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhccccc
Q 015431 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKW 128 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w 128 (407)
..+.|+||--.-.++. ..--.|+-.||..|+.+.
T Consensus 14 ~D~~C~VC~~~t~~~l--~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEVWTAESL--FPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCCCCSSCC--SSCSSSSSCCCHHHHHHH
T ss_pred CCcccCccccccccce--eccccccccccHhhcccc
Confidence 6789999974433211 112368899999999875
No 245
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=60.83 E-value=2.9 Score=32.55 Aligned_cols=62 Identities=19% Similarity=0.307 Sum_probs=36.3
Q ss_pred ccceeeccc---CCCcccccccCccccccCCcc-ccccccccCCceeEee---------------cCceeEEeccCCcch
Q 015431 145 KSICFVCQT---SENLWMCVICGFVGCGRYKGG-HAIIHWKETEHCYSLE---------------LETQRVWDYAGDNYV 205 (407)
Q Consensus 145 ~~~C~~C~~---~~~l~~Cl~Cg~~~Cgr~~~~-Ha~~H~~~t~H~~~~~---------------l~~~~v~cy~cd~~v 205 (407)
...|..|.. .++...|+.|++..|..+... |...... ..|.+... -+...+||..|+..|
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~-~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~i 81 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPF-TGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLI 81 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSS-TTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEE
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCcc-CCCeeeccccccCccCCcCcCcCCCcceEECCCCCCcc
Confidence 345666652 456778999999999876654 5421110 23332211 123567888888777
Q ss_pred hh
Q 015431 206 HR 207 (407)
Q Consensus 206 hr 207 (407)
..
T Consensus 82 C~ 83 (101)
T 2jun_A 82 CA 83 (101)
T ss_dssp CH
T ss_pred ch
Confidence 54
No 246
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=60.46 E-value=4.5 Score=30.92 Aligned_cols=51 Identities=14% Similarity=0.164 Sum_probs=40.7
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..++|++ + +-...+.|.+.++|......+||..|.
T Consensus 27 ~t~~~l~~~F~~~G-~i~~v~~~~-~----kg~afV~f~~~~~a~~a~~~l~g~~~~ 77 (99)
T 2cpj_A 27 ITEEEMRKLFEKYG-KAGEVFIHK-D----KGFGFIRLETRTLAEIAKVELDNMPLR 77 (99)
T ss_dssp CCHHHHHHHTSTTC-CCSEEEEET-T----TTEEEEECSSSHHHHHHHHHHTTCCBT
T ss_pred CCHHHHHHHHhhcC-CeEEEEEec-C----CCEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 35677777877764 578889887 2 337889999999999999999998764
No 247
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=60.41 E-value=6.7 Score=32.63 Aligned_cols=56 Identities=11% Similarity=0.227 Sum_probs=44.0
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeC-CCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTD-GMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~-~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..|- .|..++|+++. ....+-...+.|.+.++|..-...+||..|.
T Consensus 82 ~~~~~l~~~F~~~G-~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 138 (158)
T 2kn4_A 82 TSPDTLRRVFEKYG-RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD 138 (158)
T ss_dssp CCHHHHHHHHHHHS-CEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESS
T ss_pred CCHHHHHHHHHhcC-CeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 46678888887775 68889999852 2234557789999999999999999998764
No 248
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=60.30 E-value=7.1 Score=26.40 Aligned_cols=31 Identities=32% Similarity=0.712 Sum_probs=19.6
Q ss_pred cccccccccccCCCceeeecCCCccchhcccc
Q 015431 96 SCPVCLERLDQDTSGILTTICNHSFHCSCISK 127 (407)
Q Consensus 96 ~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~ 127 (407)
.|.||...-+. ..-+.=-.|...||..|+.+
T Consensus 2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p 32 (51)
T 1f62_A 2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRP 32 (51)
T ss_dssp CCTTTCCSSCC-SCCEECTTTCCEECHHHHCT
T ss_pred CCCCCCCCCCC-CCEEECCCCChhhCcccCCC
Confidence 58888765321 11122347888999999965
No 249
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.98 E-value=6.1 Score=30.19 Aligned_cols=53 Identities=13% Similarity=0.151 Sum_probs=39.9
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..| ..|++++......+-...+.|.+.++|..-...+||..|.
T Consensus 27 ~t~~~l~~~F~~~----g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (101)
T 2fc9_A 27 ATEETLQEVFEKA----TFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE 79 (101)
T ss_dssp CCHHHHHHHCSSC----SEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEET
T ss_pred CCHHHHHHHHHhC----CEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 3566777777664 4668888533334567889999999999999999998765
No 250
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=59.62 E-value=8.5 Score=32.52 Aligned_cols=56 Identities=9% Similarity=0.106 Sum_probs=43.8
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..| ..|..++|++... ...+-...+.|.+...|..-...+||..|.
T Consensus 84 ~t~~~L~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 140 (165)
T 1rk8_A 84 AQEDEIQEKFCDY-GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM 140 (165)
T ss_dssp CCHHHHHHHHGGG-SCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCHHHHHHHhhcC-CCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4667888888887 4688999998422 223567889999999999999999998764
No 251
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.46 E-value=4.8 Score=30.24 Aligned_cols=49 Identities=14% Similarity=0.298 Sum_probs=39.9
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..++|++ + ...+.|.+.++|..-...+||..|.
T Consensus 22 ~t~~~l~~~F~~~G-~v~~v~~~~-~------~afV~f~~~~~a~~A~~~l~g~~~~ 70 (92)
T 2dgt_A 22 CTNQELRAKFEEYG-PVIECDIVK-D------YAFVHMERAEDAVEAIRGLDNTEFQ 70 (92)
T ss_dssp CCHHHHHHHHHTTS-CCCEEEECS-S------EEEEEESCHHHHHHHHHHHTTEEET
T ss_pred CCHHHHHHHHHhcC-CeEEEEEEC-C------EEEEEECCHHHHHHHHHHhCCCeeC
Confidence 46678888887764 588888887 2 6788999999999999999998764
No 252
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=58.84 E-value=6.9 Score=32.38 Aligned_cols=57 Identities=12% Similarity=0.198 Sum_probs=43.6
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeC-CCCCeeEEEEeccChhhHhhHhhhcCCccccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTD-GMDDQYSVLIRFDSQDSADKFYQHFNGRQFNS 58 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~-~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~~ 58 (407)
+|..|+..++.+|- .|..++++++. ...++-...+.|.+.++|..-...+||..|..
T Consensus 101 ~t~~~l~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 101 ITDDQLDTIFGKYG-SIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp CCHHHHHHHHTSSS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCHHHHHHhhhcCC-cEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 35567777776654 58889999853 22345678999999999999999999998743
No 253
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=58.75 E-value=1.1e+02 Score=29.63 Aligned_cols=76 Identities=9% Similarity=0.215 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015431 261 LAAQLENQKIYYETLLQEAKEETEKIIS--EAVKKAIAQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISE 336 (407)
Q Consensus 261 L~~qle~qr~~~E~~l~~l~~~~~~~l~--~~~~~~~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~ 336 (407)
|+..|..|-.-|+.+|++|+.+...... ......+..-.+.+..++.....--..+.+++..|.+++..++.++..
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~ 131 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIE 131 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666677777777766522111 111111112222222232222222222445666666666666655544
No 254
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=58.75 E-value=5.5 Score=28.54 Aligned_cols=36 Identities=17% Similarity=0.551 Sum_probs=24.1
Q ss_pred CCCCcccccccccccCCCcee-eecCCCccchhcccc
Q 015431 92 TEQPSCPVCLERLDQDTSGIL-TTICNHSFHCSCISK 127 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~-~~~C~H~F~~~Cl~~ 127 (407)
.+...|.||..........++ =-.|...||..|+..
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p 40 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTP 40 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSS
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCC
Confidence 366889999976432222222 347888999999865
No 255
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=58.65 E-value=17 Score=34.49 Aligned_cols=6 Identities=67% Similarity=1.680 Sum_probs=3.0
Q ss_pred eEEecc
Q 015431 195 RVWDYA 200 (407)
Q Consensus 195 ~v~cy~ 200 (407)
.+|+|.
T Consensus 40 ~fwdY~ 45 (307)
T 2l7b_A 40 RFWDYL 45 (307)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 355554
No 256
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=58.56 E-value=56 Score=36.77 Aligned_cols=6 Identities=33% Similarity=1.176 Sum_probs=2.5
Q ss_pred cccccc
Q 015431 100 CLERLD 105 (407)
Q Consensus 100 Cle~~~ 105 (407)
|++.+.
T Consensus 523 ~~~lie 528 (1184)
T 1i84_S 523 CIELIE 528 (1184)
T ss_dssp HHHTTS
T ss_pred HHHHHh
Confidence 444443
No 257
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=58.39 E-value=5.2 Score=31.41 Aligned_cols=55 Identities=13% Similarity=0.194 Sum_probs=41.3
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|-.|+..|+..|- .|..++|+++.. ...+-...+.|.+.++|..-. .+||..|.
T Consensus 37 ~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 92 (114)
T 2cq4_A 37 IRPRDLEDFFSAVG-KVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLL 92 (114)
T ss_dssp CCHHHHHHHHTTTS-CEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEET
T ss_pred CCHHHHHHHHHhCC-CEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeC
Confidence 35567777777663 688899997432 234557889999999999999 99998764
No 258
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=57.87 E-value=66 Score=25.19 Aligned_cols=19 Identities=11% Similarity=0.177 Sum_probs=7.7
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q 015431 318 DLNENLLKNQEMWKAKISE 336 (407)
Q Consensus 318 eln~~l~~~~~~l~~kl~~ 336 (407)
++...|.++.+.+...++.
T Consensus 70 ea~~~L~~~~e~ie~~i~~ 88 (117)
T 2zqm_A 70 KAVAELKEKIETLEVRLNA 88 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333333
No 259
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=57.84 E-value=56 Score=25.69 Aligned_cols=14 Identities=14% Similarity=0.162 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHH
Q 015431 350 DKIQDSEAQLRDLM 363 (407)
Q Consensus 350 ~~i~~Leeq~~dLm 363 (407)
+.|..|++++..|.
T Consensus 75 ~~~e~Lq~E~erLr 88 (100)
T 1go4_E 75 EDHSQLQAECERLR 88 (100)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555553
No 260
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=57.81 E-value=9.7 Score=32.16 Aligned_cols=57 Identities=16% Similarity=0.211 Sum_probs=44.7
Q ss_pred CChhHHhHhhHHHHH-hhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQ-HILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~-~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|-.|+..++..|-. .|..++|+++.. ...+-...+.|.+.++|..-...+||..|.
T Consensus 67 ~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~ 125 (156)
T 3n9u_C 67 TTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN 125 (156)
T ss_dssp CCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET
T ss_pred CCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 356788888888764 799999998522 234557889999999999999999998653
No 261
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=57.58 E-value=58 Score=24.44 Aligned_cols=15 Identities=7% Similarity=0.118 Sum_probs=3.6
Q ss_pred HHHHHHHHHHHHHHH
Q 015431 265 LENQKIYYETLLQEA 279 (407)
Q Consensus 265 le~qr~~~E~~l~~l 279 (407)
|+++++....++..+
T Consensus 4 l~~e~e~~~~klq~~ 18 (79)
T 3cvf_A 4 MAAEREETQQKVQDL 18 (79)
T ss_dssp ------CTTHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444344444433
No 262
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=57.56 E-value=5.7 Score=31.73 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=42.8
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeC-CCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTD-GMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~-~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..|- .|..++|+++. ...++-...+.|.+.++|..-...+||..|.
T Consensus 34 ~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 90 (126)
T 3ex7_B 34 ATEEDIHDKFAEYG-EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM 90 (126)
T ss_dssp CCHHHHHHHHHTTS-CEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCHHHHHHHHHhcC-CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 35677888877764 57889998842 2223557889999999999999999998764
No 263
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=57.37 E-value=7.4 Score=34.24 Aligned_cols=55 Identities=18% Similarity=0.371 Sum_probs=43.9
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..++|+++.. .++....+.|.+.++|..-...+||..|+
T Consensus 115 ~t~~~l~~~F~~~G-~i~~~~i~~d~~-~~~g~~fV~f~~~~~a~~Ai~~lng~~~~ 169 (213)
T 4f02_A 115 IDNKALYDTFSAFG-NILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLN 169 (213)
T ss_dssp CCHHHHHHHHGGGS-CEEEEEEEEETT-EEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred cHHHHHHHHHhhcC-CeEEEEeeccCC-CCceEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 35667777777764 688999999544 35778899999999999999999998653
No 264
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=57.31 E-value=5.8 Score=30.92 Aligned_cols=56 Identities=13% Similarity=0.113 Sum_probs=42.1
Q ss_pred CChhHHhHhhHHHH--HhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFI--QHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~--~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..|- ..|..++|+++.....+-...+.|.+.++|..-.. .||..+.
T Consensus 23 ~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~ 80 (107)
T 2lmi_A 23 CTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMG 80 (107)
T ss_dssp CCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSS
T ss_pred CCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeC
Confidence 35678888888763 34889999985443456678899999999998888 7886553
No 265
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.27 E-value=6.5 Score=30.55 Aligned_cols=54 Identities=9% Similarity=0.155 Sum_probs=41.6
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..++|++ +.. .+-...+.|.+.++|..-...+||..|.
T Consensus 34 ~t~~~l~~~F~~~G-~v~~~~i~~-~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~ 87 (109)
T 1x4a_A 34 IRTKDIEDVFYKYG-AIRDIDLKN-RRG-GPPFAFVEFEDPRDAEDAVYGRDGYDYD 87 (109)
T ss_dssp CCHHHHHHHHGGGS-CEEEEEECC-SSS-SSCCEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCHHHHHHHHHhcC-CeEEEEEEE-CCC-CCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 46678888888764 577888876 332 3557788999999999999999998664
No 266
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=57.17 E-value=49 Score=24.38 Aligned_cols=23 Identities=9% Similarity=0.206 Sum_probs=14.3
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhH
Q 015431 345 LRAKDDKIQDSEAQLRDLMAYLE 367 (407)
Q Consensus 345 ~~~~~~~i~~Leeq~~dLm~~l~ 367 (407)
++.++++|.+.++.|+.|...|+
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666677766655543
No 267
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.11 E-value=13 Score=27.91 Aligned_cols=53 Identities=15% Similarity=0.250 Sum_probs=39.8
Q ss_pred CChhHHhHhhHHHHHhhheeE-EEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMR-IVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r-~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..+| |++ +...++ ..+.|.+.++|..-...+||..|.
T Consensus 27 ~t~~~l~~~F~~~G-~v~~~~~i~~-~~~~~~--afV~f~~~~~a~~Ai~~l~g~~~~ 80 (96)
T 2e44_A 27 LQWEVLDSLLVQYG-VVESCEQVNT-DSETAV--VNVTYSSKDQARQALDKLNGFQLE 80 (96)
T ss_dssp SCHHHHHHHHHHHS-CEEEEEEECC-SSSSEE--EEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCHHHHHHHHHhcC-CeEEEEEeec-CCCCCE--EEEEECCHHHHHHHHHHhCCCEEC
Confidence 35677888887764 477886 666 433233 889999999999999999998764
No 268
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=57.08 E-value=5.7 Score=30.17 Aligned_cols=51 Identities=18% Similarity=0.237 Sum_probs=39.9
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..+++++ + +-...+.|.+.++|..-...+||..|.
T Consensus 29 ~t~~~l~~~F~~~G-~v~~v~~~~-~----~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (97)
T 1why_A 29 TSLAALAREFDRFG-SIRTIDHVK-G----DSFAYIQYESLDAAQAACAKMRGFPLG 79 (97)
T ss_dssp CCHHHHHHHHHTTS-CEEEEEECS-S----SCCEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCHHHHHHHHHhcC-CeeEEEEeC-C----CCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 46678888887775 377788876 2 336788999999999999999998764
No 269
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=56.95 E-value=61 Score=24.46 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHhHHH
Q 015431 311 REKKFLDDLNENLLKNQEM 329 (407)
Q Consensus 311 ~e~~~l~eln~~l~~~~~~ 329 (407)
.|+..|++-|..|....+.
T Consensus 27 mEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 27 MEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444445555444333
No 270
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=56.91 E-value=8.2 Score=30.90 Aligned_cols=32 Identities=19% Similarity=0.621 Sum_probs=18.2
Q ss_pred cccccccccccCCCceeeecCCCccchhcccc
Q 015431 96 SCPVCLERLDQDTSGILTTICNHSFHCSCISK 127 (407)
Q Consensus 96 ~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~ 127 (407)
.|.||...-.+...-+.=-.|...||..|+.+
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p 94 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDP 94 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSS
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCC
Confidence 57777654221111122335778899999865
No 271
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=56.68 E-value=6.5 Score=30.25 Aligned_cols=49 Identities=22% Similarity=0.377 Sum_probs=39.4
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..++|++ + ...+.|.+.++|......+||..|.
T Consensus 23 ~t~~~l~~~F~~~G-~i~~v~~~~-~------~afV~f~~~~~a~~A~~~l~g~~~~ 71 (103)
T 2dgu_A 23 VTEEILEKAFSQFG-KLERVKKLK-D------YAFIHFDERDGAVKAMEEMNGKDLE 71 (103)
T ss_dssp CCHHHHHHHHHHHS-CEEEEEECS-S------CEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCHHHHHHHHHhcC-CEEEEEEEC-C------EEEEEeCCHHHHHHHHHHHCCCccC
Confidence 46678888888874 477788876 2 5778999999999999999998764
No 272
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=56.56 E-value=66 Score=24.78 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=7.9
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q 015431 318 DLNENLLKNQEMWKAKISE 336 (407)
Q Consensus 318 eln~~l~~~~~~l~~kl~~ 336 (407)
++...|.++.+.+...++.
T Consensus 65 e~~~~L~~~~e~i~~~i~~ 83 (107)
T 1fxk_A 65 ELTEELQEKLETLQLREKT 83 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433333
No 273
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=56.40 E-value=11 Score=27.82 Aligned_cols=52 Identities=13% Similarity=0.206 Sum_probs=38.2
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGR 54 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~ 54 (407)
+|..|+..++..| ..|..++|+++.. ...+-...+.|.+.++|..-... ++.
T Consensus 23 ~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~ 75 (87)
T 3s7r_A 23 TSKKDLKDYFTKF-GEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEH 75 (87)
T ss_dssp CCHHHHHHHHTTT-SCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCE
T ss_pred CCHHHHHHHHHhC-CCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCC
Confidence 3567788887776 4688999998532 23466788999999999888755 554
No 274
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=56.22 E-value=1.6e+02 Score=29.06 Aligned_cols=8 Identities=25% Similarity=0.414 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 015431 262 AAQLENQK 269 (407)
Q Consensus 262 ~~qle~qr 269 (407)
...++.++
T Consensus 373 e~~~~~~~ 380 (487)
T 3oja_A 373 DEQVSNGR 380 (487)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 275
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=56.20 E-value=8.3 Score=33.42 Aligned_cols=56 Identities=13% Similarity=0.132 Sum_probs=43.7
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..++|+++.. ..++-...+.|.+.++|..-...+||..|.
T Consensus 137 ~t~~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~ 193 (216)
T 2qfj_A 137 LSDDDIKSVFEAFG-KIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLG 193 (216)
T ss_dssp CCHHHHHHHHTTSS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCHHHHHHHHhccC-CeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeC
Confidence 35677888887764 688999999522 223567899999999999999999998764
No 276
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=56.16 E-value=7.4 Score=30.50 Aligned_cols=55 Identities=13% Similarity=0.157 Sum_probs=41.7
Q ss_pred ChhHHh---HhhHHHHHhhheeEEEeeCCC----CCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 2 TYADFC---QFCASFIQHILEMRIVRTDGM----DDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 2 ~~~d~~---~f~~~~~~~i~~~r~ir~~~~----~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+..|+. .++..|- .|..++|+++..+ ..+....+.|.+.++|..-...+||..|.
T Consensus 28 ~~~~l~~~~~~F~~~G-~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 28 ADPEVLKRPEYFGKFG-KIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCHHHHHSTTTTTTTS-CEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CHHHHHHHHHHhhccC-CEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 456776 6776663 5888999885432 23468889999999999999999998763
No 277
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=55.38 E-value=11 Score=29.55 Aligned_cols=53 Identities=23% Similarity=0.375 Sum_probs=40.7
Q ss_pred hHHhHhhHHHHHhhheeEEEeeCC--CCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 4 ADFCQFCASFIQHILEMRIVRTDG--MDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 4 ~d~~~f~~~~~~~i~~~r~ir~~~--~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
.|+-..++.|- .|.+++|+++.. ...+--+.+.|.+.++|..-....||+.|.
T Consensus 28 ~dl~~~f~~~G-~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~ 82 (105)
T 2pe8_A 28 VETKEECEKYG-KVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFG 82 (105)
T ss_dssp HHHHHHGGGGS-CEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred HHHHHHHHhcC-CEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 45555555553 588999998432 234678899999999999999999999885
No 278
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=55.34 E-value=3.2 Score=29.52 Aligned_cols=37 Identities=22% Similarity=0.628 Sum_probs=24.0
Q ss_pred CCCCCccccccc-ccccCCCceeeecCCCccchhccccc
Q 015431 91 STEQPSCPVCLE-RLDQDTSGILTTICNHSFHCSCISKW 128 (407)
Q Consensus 91 ~~e~~~C~iCle-~~~~~~~~~~~~~C~H~F~~~Cl~~w 128 (407)
..+.++|+||+- .|. +..|-.-.-|.-.||..|.-.|
T Consensus 6 ~~d~~~C~iC~KTKFA-DG~Gh~C~yCk~r~CaRCGg~v 43 (62)
T 2a20_A 6 KGDAPTCGICHKTKFA-DGCGHNCSYCQTKFCARCGGRV 43 (62)
T ss_dssp SSCCCCCSSSSCSCCC-SSCCEEBTTTCCEECTTSEEEE
T ss_pred cCCcchhhhhccceec-cCCCccccccCCeeecccCCEe
Confidence 347899999985 444 3434445566677777776555
No 279
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=55.21 E-value=6 Score=34.86 Aligned_cols=41 Identities=27% Similarity=0.596 Sum_probs=26.9
Q ss_pred CcccccccccccCCCceeeecCCCccchhcccccc------CCCCCCcccc
Q 015431 95 PSCPVCLERLDQDTSGILTTICNHSFHCSCISKWT------DSSCPVCRYC 139 (407)
Q Consensus 95 ~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~------~~~CP~Cr~~ 139 (407)
..|.+|.+--+ -+.-..|...||..|+.+-. ...||.|+..
T Consensus 3 ~~C~~C~~~g~----ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKPGD----LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCCSS----CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCCCCc----eeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 57999985422 13344688899999996532 2567777654
No 280
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.05 E-value=8.2 Score=29.29 Aligned_cols=53 Identities=6% Similarity=0.114 Sum_probs=39.2
Q ss_pred ChhHHh----HhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 2 TYADFC----QFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 2 ~~~d~~----~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
|..|+. .++..| ..|.+++|+++..+ +-...+.|.+.++|..-...+||..|.
T Consensus 22 ~~~~l~~~l~~~F~~~-G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~ 78 (96)
T 2dgx_A 22 SRKELQQLLQEAFARH-GKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIG 78 (96)
T ss_dssp CHHHHHHHHHHHHHHH-SCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CHHHHHHHHHHhcccc-CcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 455666 444444 35888999984333 446889999999999999999998764
No 281
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=54.94 E-value=9.1 Score=33.05 Aligned_cols=56 Identities=14% Similarity=0.196 Sum_probs=43.5
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..|- .|..++|+++.....+-...+.|.+.++|......+||..|.
T Consensus 100 ~te~~L~~~F~~~G-~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~ 155 (177)
T 2f3j_A 100 VSDADIQELFAEFG-TLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD 155 (177)
T ss_dssp CCHHHHHHHHHHTS-CCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCS
T ss_pred CCHHHHHHHHHhcC-CeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 35677888887764 578999998543334557889999999999999999998664
No 282
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=54.75 E-value=8.2 Score=29.88 Aligned_cols=55 Identities=15% Similarity=0.177 Sum_probs=42.0
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcC------Cccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFN------GRQF 56 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~------g~~f 56 (407)
+|..|+..|+..|- .|..++|+++.. ...+-...+.|.+.++|..-...+| |..|
T Consensus 27 ~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 27 SEEEALGEVLQQFG-DLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCHHHHHHHHHTTS-CEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CCHHHHHHHHHhcC-CeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 46677888887764 578899998422 2345578899999999999999998 7655
No 283
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=54.50 E-value=7.2 Score=28.71 Aligned_cols=46 Identities=24% Similarity=0.486 Sum_probs=27.6
Q ss_pred CCCCcccccccccccCCCceeeecCCCccchhcccccc------CCCCCCccc
Q 015431 92 TEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWT------DSSCPVCRY 138 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~------~~~CP~Cr~ 138 (407)
.+...|+||....+. ..-+.=-.|...||..|+.... ...||.|+.
T Consensus 16 ~~~~~C~~C~~~~~~-~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~ 67 (75)
T 2k16_A 16 NQIWICPGCNKPDDG-SPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCAN 67 (75)
T ss_dssp CEEECBTTTTBCCSS-CCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHH
T ss_pred CCCcCCCCCCCCCCC-CCEEEcCCCCcccccccCCCCccCCCCCCEEChhccC
Confidence 355679999876432 1112223677889999986432 245666654
No 284
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=54.17 E-value=11 Score=31.11 Aligned_cols=52 Identities=10% Similarity=0.191 Sum_probs=41.9
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..++|++ + .+-...+.|.+.++|..-...+||..|.
T Consensus 85 ~t~~~l~~~F~~~G-~i~~v~i~~-~---~~g~afV~f~~~~~a~~A~~~l~g~~~~ 136 (150)
T 2i2y_A 85 GNKTELERAFGYYG-PLRSVWVAR-N---PPGFAFVEFEDPRDAADAVRELDGRTLC 136 (150)
T ss_dssp CSCHHHHHHHHHHS-CEEEEEECS-S---SCSEEEEEESSHHHHHHHHHHHSSSCSS
T ss_pred CCHHHHHHHHHhhC-CEEEEEEee-C---CCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 35678888888874 688999998 3 2447889999999999999999998763
No 285
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=54.16 E-value=8.9 Score=29.72 Aligned_cols=54 Identities=11% Similarity=0.068 Sum_probs=40.3
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+.+|- +..++|+++.....+-...+.|.+.++|..-.. .|+..|.
T Consensus 27 ~te~~l~~~F~~~G--~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~ 80 (102)
T 1wez_A 27 ATENDIYNFFSPLN--PMRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQ 80 (102)
T ss_dssp CCHHHHHHSSCSCC--CSEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSS
T ss_pred CCHHHHHHHHHHcC--ceEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeEC
Confidence 46678888988876 449999985433345578899999999998884 5776543
No 286
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=54.03 E-value=8.3 Score=35.32 Aligned_cols=54 Identities=7% Similarity=0.120 Sum_probs=44.9
Q ss_pred ChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCccc
Q 015431 2 TYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQF 56 (407)
Q Consensus 2 ~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f 56 (407)
|..|+..|+.+|- .|..++|+++.....+....+.|.+.++|..-...+||..|
T Consensus 198 ~~~~l~~~f~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 251 (284)
T 3smz_A 198 DVDALCRALSAVH-SPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSL 251 (284)
T ss_dssp CHHHHHHHTCSSS-CCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CHHHHHHHhhCCC-CeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Confidence 5577888888774 68899999854444577899999999999999999999987
No 287
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=54.02 E-value=71 Score=32.41 Aligned_cols=16 Identities=19% Similarity=-0.141 Sum_probs=7.4
Q ss_pred hhHHHHHHHHHHHHHH
Q 015431 348 KDDKIQDSEAQLRDLM 363 (407)
Q Consensus 348 ~~~~i~~Leeq~~dLm 363 (407)
.+++..++++++.+++
T Consensus 135 l~~~~~~~~~~l~~~l 150 (501)
T 1wle_A 135 LYPKEAQLEEQFYLRA 150 (501)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444555555444
No 288
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=54.01 E-value=12 Score=26.62 Aligned_cols=51 Identities=16% Similarity=0.162 Sum_probs=38.1
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcC
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFN 52 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~ 52 (407)
+|..|+..++..|- .|..++++++.. ..++-...+.|.+.++|..-....|
T Consensus 12 ~t~~~l~~~F~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 12 TTQEGLREYFGQFG-EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp CCSHHHHHHHTTTS-CCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT
T ss_pred CCHHHHHHHHHhcC-CEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC
Confidence 35677777777763 488999998532 2345578899999999999888666
No 289
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=53.98 E-value=62 Score=32.72 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=10.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHH
Q 015431 344 ALRAKDDKIQDSEAQLRDLMAY 365 (407)
Q Consensus 344 ~~~~~~~~i~~Leeq~~dLm~~ 365 (407)
.++..+++..++++++.+++..
T Consensus 119 ~i~~le~~~~~~~~~~~~~l~~ 140 (484)
T 3lss_A 119 QVAGLAKEAQQLEEERDKLMLN 140 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444455555554433
No 290
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=53.78 E-value=4.9 Score=34.33 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=19.3
Q ss_pred CCCcccccccccccC-CCceeeecCCCccchhc
Q 015431 93 EQPSCPVCLERLDQD-TSGILTTICNHSFHCSC 124 (407)
Q Consensus 93 e~~~C~iCle~~~~~-~~~~~~~~C~H~F~~~C 124 (407)
...+|.+|+..|.-. ..+.+=..|.|.+|..|
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C 99 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSC 99 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGG
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccc
Confidence 578999999987632 12233345555555555
No 291
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=53.76 E-value=22 Score=27.10 Aligned_cols=7 Identities=29% Similarity=0.302 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 015431 332 AKISEIE 338 (407)
Q Consensus 332 ~kl~~~~ 338 (407)
..+..++
T Consensus 35 ~~i~~lE 41 (86)
T 1x8y_A 35 RLLAEKE 41 (86)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 292
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=53.73 E-value=5.6 Score=28.07 Aligned_cols=31 Identities=19% Similarity=0.614 Sum_probs=21.4
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhcccc
Q 015431 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISK 127 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~ 127 (407)
....|.||...-. -+.=-.|...||..|+.+
T Consensus 4 ~~~~C~vC~~~g~----ll~Cd~C~~~fH~~Cl~p 34 (60)
T 2puy_A 4 HEDFCSVCRKSGQ----LLMCDTCSRVYHLDCLDP 34 (60)
T ss_dssp CCSSCTTTCCCSS----CEECSSSSCEECGGGSSS
T ss_pred CCCCCcCCCCCCc----EEEcCCCCcCEECCcCCC
Confidence 4578999986411 133347888999999875
No 293
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=53.59 E-value=7.5 Score=32.21 Aligned_cols=56 Identities=11% Similarity=0.149 Sum_probs=43.1
Q ss_pred CChhHHhHhhHHHHHh--hheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQH--ILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~--i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+.+|-.. |..++|+++.....+-...+.|.+.++|..-.. +||..|.
T Consensus 56 ~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~ 113 (136)
T 2hgl_A 56 CSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMG 113 (136)
T ss_dssp CCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESS
T ss_pred CCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEEC
Confidence 3667888898887553 889999985443346678999999999998887 8887553
No 294
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=53.58 E-value=6.3 Score=32.64 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=43.4
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..|- .|.+++++++.. ...+-...+.|.+.++|......+||..|.
T Consensus 15 ~~~~~l~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 71 (168)
T 1b7f_A 15 MTDRELYALFRAIG-PINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVR 71 (168)
T ss_dssp CCHHHHHHHHHTTS-CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCHHHHHHHHHhcC-CeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeC
Confidence 46678888887764 588999998532 223457889999999999999999998764
No 295
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=53.46 E-value=21 Score=27.78 Aligned_cols=14 Identities=7% Similarity=0.126 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 015431 328 EMWKAKISEIEERE 341 (407)
Q Consensus 328 ~~l~~kl~~~~~~~ 341 (407)
+.+...+..++.++
T Consensus 40 ~~~q~~i~~lE~eL 53 (95)
T 3mov_A 40 DNSRRMLTDKEREM 53 (95)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 296
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=53.24 E-value=79 Score=24.67 Aligned_cols=20 Identities=10% Similarity=0.165 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 015431 263 AQLENQKIYYETLLQEAKEE 282 (407)
Q Consensus 263 ~qle~qr~~~E~~l~~l~~~ 282 (407)
++|+.+...++..+..|..+
T Consensus 15 ~~le~~~~~~~~e~~~L~~~ 34 (97)
T 2eqb_B 15 NTLKRELSDRDDEVKRLRED 34 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHH
Confidence 34445555566555555443
No 297
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=52.20 E-value=72 Score=24.00 Aligned_cols=7 Identities=0% Similarity=0.017 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 015431 355 SEAQLRD 361 (407)
Q Consensus 355 Leeq~~d 361 (407)
|++++++
T Consensus 64 l~~~~ee 70 (81)
T 1wt6_A 64 LQERMEL 70 (81)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 298
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=52.18 E-value=13 Score=28.94 Aligned_cols=43 Identities=26% Similarity=0.355 Sum_probs=35.1
Q ss_pred HhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 15 QHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 15 ~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
..|.+++|+++.....+--+.+.|.+.++|..-....||+.|.
T Consensus 52 G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~ 94 (104)
T 1jmt_A 52 GEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFN 94 (104)
T ss_dssp CCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3678899998543344677889999999999999999999875
No 299
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=51.56 E-value=14 Score=29.77 Aligned_cols=66 Identities=12% Similarity=0.206 Sum_probs=48.0
Q ss_pred ChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCccc-ccCC-CceeEEEEEeeEE
Q 015431 2 TYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQF-NSLE-EEVCHVLFTVDVQ 73 (407)
Q Consensus 2 ~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f-~~l~-~~~c~~v~v~~v~ 73 (407)
|-.|+-.+.++|- .|..++|+. ++--..+.|.+.++|..=....||+.+ ..+. ..+-++-|+.++.
T Consensus 40 te~~L~~~F~~fG-~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p 107 (114)
T 2cq2_A 40 SRNQLLPVLEKCG-LVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQ 107 (114)
T ss_dssp CHHHHHHHHHHHS-CEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCCC
T ss_pred CHHHHHHHHHhcC-CeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccCc
Confidence 5567788888886 577777764 233678899999999999999999987 6664 3455555555443
No 300
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=51.19 E-value=5 Score=30.93 Aligned_cols=53 Identities=11% Similarity=0.258 Sum_probs=40.2
Q ss_pred hHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 4 ADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 4 ~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
.|+..+++.|- .|.+++|+++.. ...+-...+.|.+..+|..-...+||..|.
T Consensus 27 ~~L~~~F~~~G-~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~ 80 (100)
T 3ns6_A 27 KALTSLFSKAG-KVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD 80 (100)
T ss_dssp HHHHHHHHTTS-CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred HHHHHHHHhcC-CEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccC
Confidence 45666666553 688999998643 234557889999999999999999998764
No 301
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=51.16 E-value=92 Score=24.81 Aligned_cols=19 Identities=21% Similarity=0.083 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 015431 347 AKDDKIQDSEAQLRDLMAY 365 (407)
Q Consensus 347 ~~~~~i~~Leeq~~dLm~~ 365 (407)
....++..|++|++-|...
T Consensus 87 kl~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 87 KLVEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH
Confidence 3444666777777766543
No 302
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=50.82 E-value=19 Score=32.65 Aligned_cols=64 Identities=14% Similarity=0.079 Sum_probs=47.3
Q ss_pred ChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCccc-ccCCCceeEE
Q 015431 2 TYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQF-NSLEEEVCHV 66 (407)
Q Consensus 2 ~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f-~~l~~~~c~~ 66 (407)
|..|+..++..|- .|..++|+++.....+....+.|.+..+|..-...+|+..| ......+..|
T Consensus 109 t~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 109 SNELLEQAFSQFG-PVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CHHHHHHHHGGGS-CEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred CHHHHHHHHHhcC-CeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 5667777777764 68899999975444577899999999999999999955544 3444555444
No 303
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=50.77 E-value=10 Score=28.40 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=42.2
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCC-CCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGM-DDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~-~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..|-. |..+++++.... ..+-...+.|.+.++|......+||..|.
T Consensus 27 ~t~~~l~~~F~~~G~-i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 83 (95)
T 2ek1_A 27 VSIDEILDFFYGYQV-IPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG 83 (95)
T ss_dssp CCHHHHHHHTTTSCB-CTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCHHHHHHHHHhcCC-ccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 466788888877643 666788875332 24567889999999999999999998764
No 304
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=50.41 E-value=98 Score=31.25 Aligned_cols=18 Identities=17% Similarity=0.215 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 015431 348 KDDKIQDSEAQLRDLMAY 365 (407)
Q Consensus 348 ~~~~i~~Leeq~~dLm~~ 365 (407)
.+++..++++++.+++..
T Consensus 90 le~~~~~~~~~~~~~l~~ 107 (485)
T 3qne_A 90 IIEKEAEADKNLRSKINQ 107 (485)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333444455555554443
No 305
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=50.37 E-value=13 Score=26.36 Aligned_cols=54 Identities=7% Similarity=0.161 Sum_probs=39.5
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQF 56 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f 56 (407)
+|..|+..|+..|- .|..++++++.. ..++-...+.|.+.++|..-... +|..|
T Consensus 11 ~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~ 65 (75)
T 1iqt_A 11 TPEEKIREYFGGFG-EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNV 65 (75)
T ss_dssp CCHHHHHHHHHHHS-CCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCB
T ss_pred CCHHHHHHHHHhcC-CeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeE
Confidence 46678888888874 488899988422 23455788999999999888875 55543
No 306
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=50.23 E-value=71 Score=23.28 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 015431 261 LAAQLENQKIYYETLLQEAKEET 283 (407)
Q Consensus 261 L~~qle~qr~~~E~~l~~l~~~~ 283 (407)
|.+.|..-|.-||.....-+.+.
T Consensus 7 L~~il~eiRaQYE~ia~knr~Ea 29 (77)
T 3trt_A 7 CTAAMRDVRQQYESVAAKNLQEA 29 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Confidence 55666667777777766554443
No 307
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=50.19 E-value=27 Score=22.04 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=17.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHH
Q 015431 340 REKMALRAKDDKIQDSEAQLRDLM 363 (407)
Q Consensus 340 ~~~~~~~~~~~~i~~Leeq~~dLm 363 (407)
++-+.+..|+++|..|.+...+|+
T Consensus 11 kLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 11 KLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344556677788888888877765
No 308
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=50.14 E-value=13 Score=31.66 Aligned_cols=56 Identities=13% Similarity=0.155 Sum_probs=43.5
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeC-CCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTD-GMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~-~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..++++++. ....+....+.|.+.++|..-...+||..|.
T Consensus 126 ~~~~~l~~~f~~~G-~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 182 (198)
T 2yh0_A 126 LNDDQVKELLTSFG-PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG 182 (198)
T ss_dssp CCHHHHHHHHHTBS-CEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEET
T ss_pred CCHHHHHHHHHHcC-CccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 35677788887763 57899999852 2334668899999999999999999998763
No 309
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=49.82 E-value=1e+02 Score=30.83 Aligned_cols=19 Identities=0% Similarity=0.156 Sum_probs=8.9
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 015431 347 AKDDKIQDSEAQLRDLMAY 365 (407)
Q Consensus 347 ~~~~~i~~Leeq~~dLm~~ 365 (407)
..+++..++++++.+++..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~ 105 (455)
T 2dq0_A 87 ELENEVEELKKKIDYYLWR 105 (455)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3334444555555554443
No 310
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=49.76 E-value=15 Score=28.15 Aligned_cols=67 Identities=22% Similarity=0.375 Sum_probs=40.2
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhccccccCCCCCCcccccCCC------CccceeecccCCCcccccccCcc
Q 015431 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQQQP------EKSICFVCQTSENLWMCVICGFV 166 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~~~------~~~~C~~C~~~~~l~~Cl~Cg~~ 166 (407)
..+.|+.|...+..+. ..+..-+..||..| ..|-.|...+... ..+.|..|-.......|..|+..
T Consensus 4 ~~~~C~~C~~~I~~~~--~~~~a~~~~~H~~C------F~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~ 75 (101)
T 2cup_A 4 GSSGCVECRKPIGADS--KEVHYKNRFWHDTC------FRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKA 75 (101)
T ss_dssp CCCBCSSSCCBCCSSS--CEEEETTEEEETTT------CCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCB
T ss_pred CCCcCcccCCcccCCc--eEEEECccChhhcC------CcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCc
Confidence 4588999999886322 33445577899888 4788887766421 22445555444333445555544
Q ss_pred c
Q 015431 167 G 167 (407)
Q Consensus 167 ~ 167 (407)
+
T Consensus 76 I 76 (101)
T 2cup_A 76 I 76 (101)
T ss_dssp C
T ss_pred c
Confidence 3
No 311
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=49.73 E-value=11 Score=34.64 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=42.9
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC--CCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG--MDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~--~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++.+| ..|..++|+++.. ...+....+.|.+.++|..-. .+||..|.
T Consensus 223 ~t~~~l~~~F~~~-G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~ 279 (292)
T 2ghp_A 223 LDENLLRESFEGF-GSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLG 279 (292)
T ss_dssp CCHHHHHHHHGGG-SCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEET
T ss_pred CCHHHHHHHHhcc-CCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEEC
Confidence 3567788888876 4678899998433 345668999999999999999 99998764
No 312
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=49.69 E-value=7 Score=32.04 Aligned_cols=55 Identities=11% Similarity=0.234 Sum_probs=42.3
Q ss_pred ChhHHhHhhHHHHHhhheeEEEeeC-CCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 2 TYADFCQFCASFIQHILEMRIVRTD-GMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 2 ~~~d~~~f~~~~~~~i~~~r~ir~~-~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
|..|+..++..|- .|..++|+++. ....+-...+.|.+.++|..-...+||..|.
T Consensus 60 te~~L~~~F~~~G-~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~ 115 (135)
T 2lea_A 60 SPDTLRRVFEKYG-RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD 115 (135)
T ss_dssp HHHHHHHHHGGGS-CCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSS
T ss_pred CHHHHHHHHHhcC-CEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 5567888887764 68889998842 2234556789999999999999999998764
No 313
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=49.12 E-value=16 Score=32.90 Aligned_cols=57 Identities=19% Similarity=0.244 Sum_probs=44.6
Q ss_pred CChhHHhHhhHHHHH-hhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQ-HILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~-~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|-.||..|+..|-. .|..++|+++.. ...+-...+.|.+.++|..-...+||..|.
T Consensus 80 ~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~ 138 (229)
T 3q2s_C 80 TTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH 138 (229)
T ss_dssp CCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBT
T ss_pred CCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeEC
Confidence 356788888887753 799999999522 234567889999999999999999998664
No 314
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=48.86 E-value=10 Score=29.48 Aligned_cols=51 Identities=12% Similarity=0.182 Sum_probs=41.6
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCccccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFNS 58 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~~ 58 (407)
+|..|+-.|+..|- .|..++|++ + -...+.|.+.++|..-...+||..|..
T Consensus 27 ~t~~~l~~~F~~~G-~i~~~~i~~-~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 27 GSWQDLKDHMREAG-DVCYADVYR-D-----GTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp CCHHHHHHHHGGGS-CEEEEEEET-T-----TEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred CCHHHHHHHHHhcC-CEeEEEEec-C-----CEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 46678888887775 588899998 3 267899999999999999999988754
No 315
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=48.85 E-value=74 Score=23.07 Aligned_cols=14 Identities=21% Similarity=0.095 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 015431 301 KMQAKLDRCVREKK 314 (407)
Q Consensus 301 ~l~~~l~~~~~e~~ 314 (407)
+|+.+++.-.+|+.
T Consensus 7 eL~~kl~~Kq~EI~ 20 (74)
T 2q6q_A 7 ELNFKLREKQNEIF 20 (74)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444443333333
No 316
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=48.45 E-value=4.2 Score=32.40 Aligned_cols=32 Identities=22% Similarity=0.584 Sum_probs=21.5
Q ss_pred CCcccccccccccCCCceeee--cCCCccchhccc
Q 015431 94 QPSCPVCLERLDQDTSGILTT--ICNHSFHCSCIS 126 (407)
Q Consensus 94 ~~~C~iCle~~~~~~~~~~~~--~C~H~F~~~Cl~ 126 (407)
...|++|...+.++.. .+.- .|..-||..|+.
T Consensus 3 ~~~C~iC~~p~~~~~~-mi~Cdd~C~~WfH~~CVg 36 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQD-AILCEASCQKWFHRECTG 36 (105)
T ss_dssp CCBCTTTCSBCCTTSC-EEECTTTTCCEEEGGGTT
T ss_pred cCCCCCCCCccCCCCC-EEEecCCcccccccccCC
Confidence 3579999998864332 2222 577789999974
No 317
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=48.43 E-value=36 Score=27.08 Aligned_cols=26 Identities=8% Similarity=0.060 Sum_probs=18.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHH
Q 015431 340 REKMALRAKDDKIQDSEAQLRDLMAY 365 (407)
Q Consensus 340 ~~~~~~~~~~~~i~~Leeq~~dLm~~ 365 (407)
++...+..++.+|.+|..+|.||.-|
T Consensus 67 DlE~kv~kq~yEI~eL~~rV~dlgKf 92 (106)
T 1j1d_B 67 DLQEKFKQQKYEINVLRNRINDNQKV 92 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred hHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 34556667778999999999999444
No 318
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=48.32 E-value=13 Score=29.12 Aligned_cols=54 Identities=9% Similarity=0.127 Sum_probs=39.7
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQF 56 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f 56 (407)
+|..|+..|+..|- .|..++|+++.. ...+-...+.|.+.++|..-... ||..|
T Consensus 39 ~te~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~ 93 (116)
T 1x4b_A 39 TTEESLRNYYEQWG-KLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSI 93 (116)
T ss_dssp CCHHHHHHHHTSSC-CCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEE
T ss_pred CCHHHHHHHHHhcC-CEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEE
Confidence 35667777777663 578999998522 23455788999999999998887 77655
No 319
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=47.84 E-value=3.9 Score=29.65 Aligned_cols=35 Identities=26% Similarity=0.627 Sum_probs=22.1
Q ss_pred CCCCcccccccccccCCCceeee-cCCCccchhccc
Q 015431 92 TEQPSCPVCLERLDQDTSGILTT-ICNHSFHCSCIS 126 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~-~C~H~F~~~Cl~ 126 (407)
.....|++|...+.++..-+.=- .|.--||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 35678999999876533222223 677789999974
No 320
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=47.29 E-value=17 Score=33.04 Aligned_cols=10 Identities=20% Similarity=0.760 Sum_probs=6.1
Q ss_pred ceeEEEEEee
Q 015431 62 EVCHVLFTVD 71 (407)
Q Consensus 62 ~~c~~v~v~~ 71 (407)
..|+++|+..
T Consensus 126 ~~c~i~f~~e 135 (226)
T 3ask_A 126 NDCRIIFVDE 135 (226)
T ss_dssp EEEEESCTTC
T ss_pred cceeEEEecc
Confidence 3666766555
No 321
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=47.28 E-value=5.2 Score=43.30 Aligned_cols=77 Identities=17% Similarity=0.285 Sum_probs=45.9
Q ss_pred CccceeecccCC--CcccccccCccccc-c--CCccccccccccCCceeEee-----cCceeEEeccCCc---chhhhhh
Q 015431 144 EKSICFVCQTSE--NLWMCVICGFVGCG-R--YKGGHAIIHWKETEHCYSLE-----LETQRVWDYAGDN---YVHRLIQ 210 (407)
Q Consensus 144 ~~~~C~~C~~~~--~l~~Cl~Cg~~~Cg-r--~~~~Ha~~H~~~t~H~~~~~-----l~~~~v~cy~cd~---~vhrl~~ 210 (407)
+...|..|+..+ .+-.|..|+.+.|. + ..+.|...|...+.|.-..- +....+=||.|.. |+--.+.
T Consensus 10 ~~~~c~yc~~~~~~~~~~c~~~~~wfcn~~~~~~~shi~~hl~~~~~~~~~l~~~~~~~~~~~~c~~c~~~n~f~lg~~~ 89 (802)
T 2xzl_A 10 SDNSCAYCGIDSAKCVIKCNSCKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDSDLGDTVLECYNCGRKNVFLLGFVS 89 (802)
T ss_dssp --CCCTTTCCCCTTTEEEETTTCCEEECCCSSSSSCHHHHHHHHHTCCCEEECTTSSSCSCBCCCSSSCCCCTTTEEEEC
T ss_pred ChhhCcccCCCCCceEEEeCCCCcEecCCCCCCCccHHHHHHHHccCCeeeccCCCCCCCceeEeecCCCCceeeeeeee
Confidence 456788998864 56679999999994 3 34788888887777754321 2355788999843 3333445
Q ss_pred hcccCceeee
Q 015431 211 SKTDGKLVEL 220 (407)
Q Consensus 211 ~~~dgkl~e~ 220 (407)
.+.|+..|-+
T Consensus 90 ~~~~~~~~~~ 99 (802)
T 2xzl_A 90 AKSEAVVVLL 99 (802)
T ss_dssp ------CEEE
T ss_pred ccCCceEEEE
Confidence 5555544443
No 322
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=47.08 E-value=12 Score=28.97 Aligned_cols=71 Identities=17% Similarity=0.237 Sum_probs=49.7
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeC--CCCCeeE-EEEeccChhhHhhHhhhcCCcccccCCCceeEEEEEeeEEEec
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTD--GMDDQYS-VLIRFDSQDSADKFYQHFNGRQFNSLEEEVCHVLFTVDVQFTG 76 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~--~~~~~y~-vll~f~~~~~a~~f~~~~~g~~f~~l~~~~c~~v~v~~v~~~~ 76 (407)
||-++|+.-+++.. .+.-.+.+.-+ ..|+.|. +-|.|.+.+++.+|...|+|..|-.-... .+.-.|++..
T Consensus 13 LteeeF~~~l~~~~-~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~----~~~a~VE~AP 86 (91)
T 1uw4_A 13 LTKEQLQEHLQPMP-EHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQ----EYPAIVEFAP 86 (91)
T ss_dssp CCHHHHHHHHCSCC-CEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCC----EEECEEEECS
T ss_pred CCHHHHHHHhcCcc-cceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCC----EeeeEEEEcC
Confidence 56778888888764 35556666633 1345555 88999999999999999999999755433 2444455554
No 323
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=46.98 E-value=19 Score=27.52 Aligned_cols=36 Identities=25% Similarity=0.671 Sum_probs=22.3
Q ss_pred CCCCcccccccccccCCCce-eeecCCCccchhcccc
Q 015431 92 TEQPSCPVCLERLDQDTSGI-LTTICNHSFHCSCISK 127 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~-~~~~C~H~F~~~Cl~~ 127 (407)
.+...|.||...-..+...+ .=-.|.-.||..|+..
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p 59 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGV 59 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTC
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCC
Confidence 46789999987542111111 1236778899999754
No 324
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=46.90 E-value=6.6 Score=29.35 Aligned_cols=34 Identities=26% Similarity=0.565 Sum_probs=23.9
Q ss_pred Cccceeeccc---CCCcccccccCccccccCCcccccc-ccc
Q 015431 144 EKSICFVCQT---SENLWMCVICGFVGCGRYKGGHAII-HWK 181 (407)
Q Consensus 144 ~~~~C~~C~~---~~~l~~Cl~Cg~~~Cgr~~~~Ha~~-H~~ 181 (407)
....|..|.. ..+...|+.|....| ..|... |..
T Consensus 29 ~~v~C~~C~~~~~~~A~ksCl~C~~s~C----~~hl~~~H~~ 66 (78)
T 2ffw_A 29 EKVLCQFCDQDPAQDAVKTCVTCEVSYC----DECLKATHPN 66 (78)
T ss_dssp CCCBCSSCCSSSCCBCCEEETTTTEEEC----HHHHHHHSCC
T ss_pred CCccCCcCCCCCCCCCeeEccCccchhh----hhhhHhhcCC
Confidence 3567888854 346778999999999 455554 544
No 325
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=46.89 E-value=1.1e+02 Score=24.49 Aligned_cols=15 Identities=27% Similarity=0.282 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 015431 351 KIQDSEAQLRDLMAY 365 (407)
Q Consensus 351 ~i~~Leeq~~dLm~~ 365 (407)
-..+.++|+..|++-
T Consensus 71 ~q~~vq~qL~~Lt~~ 85 (112)
T 1x79_B 71 AKRDVQEQMAVLMQS 85 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334455555555554
No 326
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.55 E-value=9.1 Score=29.56 Aligned_cols=56 Identities=14% Similarity=0.138 Sum_probs=39.9
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..|-.-...++|+++.....+-...+.|.+.++|..-... |+..+.
T Consensus 27 ~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~ 82 (104)
T 1wg5_A 27 CSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIG 82 (104)
T ss_dssp CCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSS
T ss_pred CCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhC
Confidence 35678888888775433348888853333455789999999999998887 876543
No 327
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=46.45 E-value=13 Score=27.90 Aligned_cols=56 Identities=14% Similarity=0.210 Sum_probs=41.5
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCC-CCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGM-DDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~-~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..|- .|..+++++...+ ..+-...+.|.+.++|..-...+||..|.
T Consensus 27 ~t~~~l~~~F~~~G-~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 83 (98)
T 2cqp_A 27 VSIDEILDFFYGYQ-VIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG 83 (98)
T ss_dssp CCHHHHHHHTTTSC-CCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEET
T ss_pred CCHHHHHHHHHHcC-CccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 35677888887763 4666777774332 24567899999999999999999998664
No 328
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=46.44 E-value=11 Score=29.74 Aligned_cols=56 Identities=14% Similarity=0.193 Sum_probs=43.3
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccccCCCce
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFNSLEEEV 63 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~~l~~~~ 63 (407)
+|..|+..|+..|- .|..++|++ + -...+.|.+.++|..-...+||..|..-.-.+
T Consensus 28 ~t~~~l~~~F~~~G-~v~~~~i~~-~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~ 83 (115)
T 3beg_B 28 GSWQDLKDHMREAG-DVCYADVYR-D-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 83 (115)
T ss_dssp CCTTHHHHHHGGGS-CEEEEEECT-T-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCC
T ss_pred CCHHHHHHHHHhcC-CeEEEEEec-C-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeee
Confidence 35678888887764 588888887 3 26889999999999999999999876544333
No 329
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=46.21 E-value=23 Score=21.03 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 015431 259 ELLAAQLENQKIYYETL 275 (407)
Q Consensus 259 ~lL~~qle~qr~~~E~~ 275 (407)
.+|..-+|+||++|++.
T Consensus 9 ~lLKKKIEEQr~i~~~~ 25 (29)
T 3lcn_C 9 KLLKKKIEEQREILQKT 25 (29)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 47889999999999865
No 330
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.13 E-value=10 Score=28.72 Aligned_cols=51 Identities=20% Similarity=0.326 Sum_probs=39.1
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..++|.+ ++-...+.|.+.++|..-...+||..|.
T Consensus 25 ~t~~~l~~~F~~~G-~i~~v~i~~-----~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 75 (97)
T 1x5p_A 25 MTPTLLRGAFSPFG-NIIDLSMDP-----PRNCAFVTYEKMESADQAVAELNGTQVE 75 (97)
T ss_dssp CCHHHHHHHHTTTS-CEEEEEEET-----TTTEEEEEESSHHHHHHHHHHTTTEEET
T ss_pred CCHHHHHHHHhhCC-CEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 35667777777764 477788764 3336888999999999999999998763
No 331
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.08 E-value=10 Score=27.69 Aligned_cols=25 Identities=44% Similarity=0.923 Sum_probs=19.2
Q ss_pred CccceeecccCCCc-----ccccccCccccc
Q 015431 144 EKSICFVCQTSENL-----WMCVICGFVGCG 169 (407)
Q Consensus 144 ~~~~C~~C~~~~~l-----~~Cl~Cg~~~Cg 169 (407)
....|..|.....| +.| -||.+.|+
T Consensus 14 ~~~rC~~C~kk~gL~~~egf~C-rCg~~FC~ 43 (67)
T 1x4w_A 14 SRRRCFQCQTKLELVQQELGSC-RCGYVFCM 43 (67)
T ss_dssp CTTBCSSSCCBCCHHHHHHHCC-SSSCCCCT
T ss_pred cCCcchhhCCeecccccCceEe-cCCCEehh
Confidence 35678888776655 568 99999997
No 332
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=45.92 E-value=14 Score=30.20 Aligned_cols=53 Identities=17% Similarity=0.239 Sum_probs=39.5
Q ss_pred CChhHHhHhhHHHHHhhh--eeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCccc
Q 015431 1 MTYADFCQFCASFIQHIL--EMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQF 56 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~--~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f 56 (407)
+|..|+..|+.+| .|. .++|+++.....+-...+.|.+.++|..-... ++..|
T Consensus 54 ~te~dL~~~F~~~--~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l 108 (126)
T 2hgm_A 54 CTKEEIVQFFSGL--EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERI 108 (126)
T ss_dssp CCHHHHHHHTTTS--CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCB
T ss_pred CCHHHHHHHHhcC--CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEE
Confidence 3678899999999 566 89999853333455788899999999887765 55433
No 333
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.89 E-value=19 Score=27.38 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=36.7
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhh
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQH 50 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~ 50 (407)
+|..|+..|+..|- .|..++|+++.. ..++-...+.|.+.++|..-...
T Consensus 27 ~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 27 TTEQDLKEYFSTFG-EVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp CCHHHHHHHHGGGS-CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred CCHHHHHHHHHhcC-CeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 35678888887764 488899998532 33466789999999999887774
No 334
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=45.38 E-value=15 Score=32.56 Aligned_cols=52 Identities=13% Similarity=0.302 Sum_probs=41.9
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..|-. |..++|++ +. +-...+.|.+.++|......+||..|.
T Consensus 47 ~te~~L~~~F~~~G~-i~~v~i~~-~~---~g~afV~F~~~~~A~~Ai~~l~g~~~~ 98 (229)
T 2adc_A 47 VTPQSLFILFGVYGD-VQRVKILF-NK---KENALVQMADGNQAQLAMSHLNGHKLH 98 (229)
T ss_dssp CCHHHHHHHHHHHTC-EEEEEECC-TT---SCCEEEEESCHHHHHHHHHHHTTCBCS
T ss_pred CCHHHHHHHHHhCCC-eEEEEEEE-CC---CCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 466788888887754 88999998 33 225889999999999999999998774
No 335
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=45.38 E-value=11 Score=27.22 Aligned_cols=24 Identities=33% Similarity=0.962 Sum_probs=17.1
Q ss_pred ccceeecccCCCc--ccccccCccccc
Q 015431 145 KSICFVCQTSENL--WMCVICGFVGCG 169 (407)
Q Consensus 145 ~~~C~~C~~~~~l--~~Cl~Cg~~~Cg 169 (407)
...|..|.....+ +.| .||.+.|+
T Consensus 15 ~~rC~~C~kkvgl~~f~C-rCg~~FC~ 40 (64)
T 1wg2_A 15 NNRCFSCNKKVGVMGFKC-KCGSTFCG 40 (64)
T ss_dssp SCSCTTTCCCCTTSCEEC-TTSCEECS
T ss_pred CCcChhhCCcccccCeEe-ecCCEecc
Confidence 4567777665433 669 89999996
No 336
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.11 E-value=14 Score=27.47 Aligned_cols=49 Identities=10% Similarity=0.287 Sum_probs=38.8
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..++|+| . ...+.|.+.++|..-...+||..|.
T Consensus 20 ~t~~~l~~~F~~~G-~i~~v~~~~----g---~afV~f~~~~~A~~A~~~l~g~~~~ 68 (90)
T 2dnq_A 20 ATEQEIRSLFEQYG-KVLECDIIK----N---YGFVHIEDKTAAEDAIRNLHHYKLH 68 (90)
T ss_dssp CCHHHHHHHHHTSS-CEEEEEEET----T---EEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCHHHHHHHHHhCC-CEEEEEEEC----C---EEEEEECCHHHHHHHHHHhcCCccC
Confidence 46677888887764 577888884 1 6789999999999999999997654
No 337
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=44.58 E-value=10 Score=29.37 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=39.7
Q ss_pred hHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 4 ADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 4 ~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
.|+..+++.|- .|..++|++..+ ..+-...+.|.+..+|..-...+||..|.
T Consensus 36 ~~l~~~F~~~G-~v~~v~i~~~~g-~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 36 NVIHKIFSKFG-KITNDFYPEEDG-KTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp HHHHHHHGGGS-CEEEEECCCBTT-BSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred HHHHHHHhcCC-CEEEEEeeCCCC-CeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 55666666653 477888886433 45667889999999999999999998764
No 338
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=44.42 E-value=11 Score=34.68 Aligned_cols=58 Identities=14% Similarity=0.131 Sum_probs=42.8
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCccccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFNS 58 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~~ 58 (407)
+|..|+..|+..|-..|..++|+++.....+-...+.|.+.++|......+||..|..
T Consensus 129 ~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 186 (292)
T 2ghp_A 129 YTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEG 186 (292)
T ss_dssp CCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 4667888888887547899999985434456678999999999999999999987743
No 339
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=44.14 E-value=1.6e+02 Score=25.53 Aligned_cols=13 Identities=8% Similarity=0.169 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 015431 247 SSKVEAIVNEYNE 259 (407)
Q Consensus 247 ~~k~~~~~~ey~~ 259 (407)
..|+..+..++..
T Consensus 5 ~~~~~~l~~~~~~ 17 (284)
T 1c1g_A 5 KKKMQMLKLDKEN 17 (284)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHH
Confidence 4555555544443
No 340
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=44.00 E-value=14 Score=31.55 Aligned_cols=53 Identities=13% Similarity=0.167 Sum_probs=43.1
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++.+|--.|..++|++.+ +-...+.|.+.++|..-...+||..|.
T Consensus 132 ~~~~~l~~~f~~~G~~v~~v~i~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~ 184 (198)
T 1qm9_A 132 VSEEDLKVLFSSNGGVVKGFKFFQKD----RKMALIQMGSVEEAVQALIDLHNHDLG 184 (198)
T ss_dssp CCHHHHHHHHHHTTSCCCEEEESSTT----SSCEEEECSSHHHHHHHHHHHTSSCCS
T ss_pred CCHHHHHHHHHHcCCCceEEEEEeCC----CcEEEEEeCCHHHHHHHHHHhcCCccC
Confidence 35678888888883278899998732 347899999999999999999999874
No 341
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=43.92 E-value=54 Score=26.05 Aligned_cols=25 Identities=8% Similarity=0.017 Sum_probs=19.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHH
Q 015431 341 EKMALRAKDDKIQDSEAQLRDLMAY 365 (407)
Q Consensus 341 ~~~~~~~~~~~i~~Leeq~~dLm~~ 365 (407)
+...+..++.+|.+|..+|.||.-|
T Consensus 68 lE~kv~kq~yEI~eL~~rV~dlgKf 92 (107)
T 1ytz_T 68 FAEQIKRKKYEIVTLRNRIDQAQKH 92 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHhhhhHHHHHHHHHHHhcCc
Confidence 4555666778999999999999434
No 342
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=43.90 E-value=12 Score=29.43 Aligned_cols=51 Identities=14% Similarity=0.194 Sum_probs=38.9
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..++|++ ++-...+.|.+.++|..-...+||..|.
T Consensus 22 ~te~~L~~~F~~~G-~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 72 (111)
T 1whx_A 22 TLAAEIQETFSRFG-SLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFH 72 (111)
T ss_dssp CCHHHHHHHHHTTS-CEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSS
T ss_pred CCHHHHHHHHHhcC-CEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 35667777777663 466777765 3446889999999999999999998765
No 343
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.72 E-value=25 Score=28.39 Aligned_cols=55 Identities=9% Similarity=0.069 Sum_probs=40.7
Q ss_pred CChhHHhHhhHHHHH---hhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCccc
Q 015431 1 MTYADFCQFCASFIQ---HILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQF 56 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~---~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f 56 (407)
+|..|+..|+.+|-. .|..++|+++.....+-...+.|.+.++|..=... |+..|
T Consensus 35 ~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l 92 (123)
T 2dha_A 35 ATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLL 92 (123)
T ss_dssp CCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEES
T ss_pred CCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCee
Confidence 366789999988853 57899999853222355688899999999887776 77544
No 344
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=43.63 E-value=1.1e+02 Score=23.50 Aligned_cols=18 Identities=28% Similarity=0.187 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 015431 264 QLENQKIYYETLLQEAKE 281 (407)
Q Consensus 264 qle~qr~~~E~~l~~l~~ 281 (407)
.||.|-+.++.++..+..
T Consensus 27 ~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 27 FLEQQNKILLAELEQLKG 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 345555555555554443
No 345
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=43.63 E-value=1.5e+02 Score=29.95 Aligned_cols=24 Identities=8% Similarity=-0.105 Sum_probs=15.2
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHhH
Q 015431 344 ALRAKDDKIQDSEAQLRDLMAYLE 367 (407)
Q Consensus 344 ~~~~~~~~i~~Leeq~~dLm~~l~ 367 (407)
..+...++|.+|++++.++-.-+.
T Consensus 124 ~~~~l~~~i~~l~~~~~~~~~~l~ 147 (501)
T 1wle_A 124 RGREIRKQLTLLYPKEAQLEEQFY 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445577788888877765543
No 346
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=43.21 E-value=13 Score=26.91 Aligned_cols=24 Identities=42% Similarity=0.996 Sum_probs=16.6
Q ss_pred ccceeecccCCCc--ccccccCccccc
Q 015431 145 KSICFVCQTSENL--WMCVICGFVGCG 169 (407)
Q Consensus 145 ~~~C~~C~~~~~l--~~Cl~Cg~~~Cg 169 (407)
...|..|.....+ +.| .||.+.|+
T Consensus 15 ~~rC~~C~kkvgl~~f~C-rCg~~FC~ 40 (64)
T 1wfh_A 15 PNRCTVCRKRVGLTGFMC-RCGTTFCG 40 (64)
T ss_dssp CCCCTTTCCCCCTTCEEC-SSSCEECT
T ss_pred CCcChhhCCccCccCEEe-ecCCEecc
Confidence 4566666664333 568 69999996
No 347
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=43.12 E-value=3e+02 Score=28.39 Aligned_cols=17 Identities=6% Similarity=0.059 Sum_probs=7.4
Q ss_pred ccChhhHhhHhhhcCCc
Q 015431 38 FDSQDSADKFYQHFNGR 54 (407)
Q Consensus 38 f~~~~~a~~f~~~~~g~ 54 (407)
......-..+.+...|.
T Consensus 45 G~pnvGKStLiN~L~g~ 61 (592)
T 1f5n_A 45 GLYRTGKSYLMNKLAGK 61 (592)
T ss_dssp EBTTSSHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHhHcCC
Confidence 33333333445555444
No 348
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=42.75 E-value=1.3e+02 Score=24.17 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHH
Q 015431 255 NEYNELLAAQLEN 267 (407)
Q Consensus 255 ~ey~~lL~~qle~ 267 (407)
..-+.+|..||-.
T Consensus 24 rN~T~lLq~qLTq 36 (121)
T 3mq7_A 24 RNVTHLLQQELTE 36 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHH
Confidence 3445566666643
No 349
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=42.61 E-value=17 Score=28.39 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=19.1
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhcccc
Q 015431 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISK 127 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~ 127 (407)
+...| ||-...+. ..-+.=-.|...||..|+..
T Consensus 27 d~vrC-iC~~~~~~-~~mi~Cd~C~~w~H~~C~~~ 59 (98)
T 2lv9_A 27 DVTRC-ICGFTHDD-GYMICCDKCSVWQHIDCMGI 59 (98)
T ss_dssp CBCCC-TTSCCSCS-SCEEEBTTTCBEEETTTTTC
T ss_pred CCEEe-ECCCccCC-CcEEEcCCCCCcCcCcCCCC
Confidence 55678 89766543 11111235677888888754
No 350
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=41.89 E-value=12 Score=28.49 Aligned_cols=33 Identities=21% Similarity=0.482 Sum_probs=21.6
Q ss_pred cccccccccccCC-Cceeeec-CCCccchhccccc
Q 015431 96 SCPVCLERLDQDT-SGILTTI-CNHSFHCSCISKW 128 (407)
Q Consensus 96 ~C~iCle~~~~~~-~~~~~~~-C~H~F~~~Cl~~w 128 (407)
-||-|-..+.... ...+.-+ |++.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 3776655443221 2234555 9999999999999
No 351
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=41.76 E-value=10 Score=29.01 Aligned_cols=35 Identities=17% Similarity=0.423 Sum_probs=23.0
Q ss_pred CCCcccccccccccCCCcee-eecCCCccchhcccc
Q 015431 93 EQPSCPVCLERLDQDTSGIL-TTICNHSFHCSCISK 127 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~-~~~C~H~F~~~Cl~~ 127 (407)
+...|.||...-......++ =-.|...||..|+.+
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~P 50 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKP 50 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSS
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCC
Confidence 56789999976432111122 236889999999875
No 352
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=41.68 E-value=12 Score=29.32 Aligned_cols=42 Identities=21% Similarity=0.269 Sum_probs=34.3
Q ss_pred hhheeEEEeeCCC---CCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 16 HILEMRIVRTDGM---DDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 16 ~i~~~r~ir~~~~---~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
.|.+++|+++..+ +.+--+.+.|.+.++|..-....||+.|.
T Consensus 41 ~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~ 85 (105)
T 3v4m_A 41 LVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFA 85 (105)
T ss_dssp CEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 6888999885322 34567899999999999999999999884
No 353
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=41.64 E-value=16 Score=30.65 Aligned_cols=31 Identities=26% Similarity=0.568 Sum_probs=20.8
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhcccc
Q 015431 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISK 127 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~ 127 (407)
....|.||.+-=+- +.--.|-.+||..||.+
T Consensus 62 ~~d~C~vC~~GG~L----lcCD~Cpr~Fh~~Cl~p 92 (142)
T 2lbm_A 62 MDEQCRWCAEGGNL----ICCDFCHNAFCKKCILR 92 (142)
T ss_dssp CBCSCSSSCCCSSE----EECSSSCCEEEHHHHHH
T ss_pred CCCeecccCCCCcE----EeCCCCCCeeeHhhcCC
Confidence 45678888764331 22347788899999874
No 354
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.53 E-value=39 Score=26.03 Aligned_cols=52 Identities=21% Similarity=0.354 Sum_probs=38.6
Q ss_pred CChhHHhHhhHHHHHhh----heeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCccc
Q 015431 1 MTYADFCQFCASFIQHI----LEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQF 56 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i----~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f 56 (407)
+|..|+..|+..|-. | ..++++ .+ ..+-...+.|.+.++|......+||..|
T Consensus 37 ~t~~~l~~~f~~~G~-v~~~~~~~~~~--~g-~~~g~afV~f~~~~~a~~Ai~~l~g~~~ 92 (115)
T 2cpx_A 37 VTERDLVSLFARFQE-KKGPPIQFRMM--TG-RMRGQAFITFPNKEIAWQALHLVNGYKL 92 (115)
T ss_dssp CCHHHHHHHTHHHHH-SSSSCCEEEEE--CS-SSCSEEEEECSSHHHHHHHHHHSTTCBC
T ss_pred CCHHHHHHHHHHhCC-ccceEEEEEcC--CC-ccceEEEEEECCHHHHHHHHHHhCCCEe
Confidence 466788888888854 3 344444 22 2455788999999999999999999876
No 355
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.50 E-value=31 Score=25.40 Aligned_cols=42 Identities=26% Similarity=0.433 Sum_probs=28.9
Q ss_pred CCCCCcccccccccccCCCceeeecCCCccchhccccccCCCCCCcccccC
Q 015431 91 STEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQQ 141 (407)
Q Consensus 91 ~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~ 141 (407)
....+.|+.|...+.... .+..-+..||..| ..|-.|...+.
T Consensus 12 ~~~~~~C~~C~~~I~~~e---~v~a~~~~wH~~C------F~C~~C~~~L~ 53 (82)
T 2co8_A 12 AGAGDLCALCGEHLYVLE---RLCVNGHFFHRSC------FRCHTCEATLW 53 (82)
T ss_dssp CCSSCBCSSSCCBCCTTT---BCCBTTBCCBTTT------CBCSSSCCBCC
T ss_pred CCCCCCCcccCCCcccce---EEEECCCeeCCCc------CEEcCCCCCcC
Confidence 346789999999875321 2234577899988 46778877654
No 356
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=41.49 E-value=21 Score=27.31 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=27.2
Q ss_pred CCCCCCcccccccccccCCCceeeecCCCccchhcccc
Q 015431 90 SSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISK 127 (407)
Q Consensus 90 ~~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~ 127 (407)
+..+...|.+|...|......-.=-.||..||..|...
T Consensus 5 ~~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 5 SSGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 34577899999999985322222357999999998765
No 357
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=41.33 E-value=15 Score=27.30 Aligned_cols=24 Identities=29% Similarity=0.880 Sum_probs=16.3
Q ss_pred ccceeecccCCCc--ccccccCccccc
Q 015431 145 KSICFVCQTSENL--WMCVICGFVGCG 169 (407)
Q Consensus 145 ~~~C~~C~~~~~l--~~Cl~Cg~~~Cg 169 (407)
...|..|.....+ +.| .||.+.|+
T Consensus 25 ~~RC~~C~kkvgL~~f~C-rCg~~FCs 50 (74)
T 1wfp_A 25 ATRCLSCNKKVGVTGFKC-RCGSTFCG 50 (74)
T ss_dssp CCBCSSSCCBCTTTCEEC-TTSCEECT
T ss_pred CccchhhcCcccccceEe-ccCCEecc
Confidence 4566666554333 668 79999997
No 358
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=41.06 E-value=1.6e+02 Score=24.63 Aligned_cols=18 Identities=11% Similarity=0.091 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 015431 265 LENQKIYYETLLQEAKEE 282 (407)
Q Consensus 265 le~qr~~~E~~l~~l~~~ 282 (407)
|++.-...+.+|..+..+
T Consensus 43 lE~r~~~deEr~~~lE~q 60 (147)
T 2b9c_A 43 IESRAQKDEEKMEIQEIQ 60 (147)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccHHHHHHHHHH
Confidence 444444455555555443
No 359
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=40.85 E-value=20 Score=27.05 Aligned_cols=54 Identities=11% Similarity=0.063 Sum_probs=38.5
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeC-CCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTD-GMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~-~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|-.-.. +++++. ....+-...+.|.+.++|..... +||..|.
T Consensus 29 ~t~~~l~~~F~~~G~v~~--~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~ 83 (101)
T 1fj7_A 29 KSVAELKVAISELFAKND--LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVF 83 (101)
T ss_dssp SCHHHHHHHHHHHHHHHT--CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBT
T ss_pred CCHHHHHHHHHHhCCcce--EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEEC
Confidence 466788888888876444 555431 11234467899999999999998 9998765
No 360
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=40.81 E-value=19 Score=29.57 Aligned_cols=55 Identities=16% Similarity=0.274 Sum_probs=40.6
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeC-CCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTD-GMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~-~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++.+|- .|..++++++. ...++....+.|.+.++|..-.. .||..|.
T Consensus 99 ~t~~~l~~~F~~~G-~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~ 154 (167)
T 2cjk_A 99 VRPKEFEEFFSQWG-TIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFK 154 (167)
T ss_dssp CCHHHHHHHHHTTS-CCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSS
T ss_pred CCHHHHHHHHHhCc-cEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeC
Confidence 46678888888764 68899999852 23356678899999999988776 5666553
No 361
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=40.45 E-value=9.7 Score=25.65 Aligned_cols=10 Identities=40% Similarity=0.750 Sum_probs=4.9
Q ss_pred cccccccccc
Q 015431 96 SCPVCLERLD 105 (407)
Q Consensus 96 ~C~iCle~~~ 105 (407)
.|+||--.++
T Consensus 6 ~C~vCGyvyd 15 (46)
T 6rxn_A 6 VCNVCGYEYD 15 (46)
T ss_dssp EETTTCCEEC
T ss_pred ECCCCCeEEe
Confidence 3555554444
No 362
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=40.36 E-value=1.1e+02 Score=22.78 Aligned_cols=14 Identities=29% Similarity=0.261 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 015431 311 REKKFLDDLNENLL 324 (407)
Q Consensus 311 ~e~~~l~eln~~l~ 324 (407)
.|++.|+.....|.
T Consensus 25 aEl~sLrrT~~EL~ 38 (78)
T 3iv1_A 25 AELNALKRTEEDLK 38 (78)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344333333333
No 363
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.31 E-value=5.9 Score=33.70 Aligned_cols=36 Identities=25% Similarity=0.645 Sum_probs=30.4
Q ss_pred CCCccceeecccCCCcccccccCccccccCCccccc
Q 015431 142 QPEKSICFVCQTSENLWMCVICGFVGCGRYKGGHAI 177 (407)
Q Consensus 142 ~~~~~~C~~C~~~~~l~~Cl~Cg~~~Cgr~~~~Ha~ 177 (407)
.+.+..|..|+.....|.++.-|.+.|.+|.+-|..
T Consensus 26 ~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~ 61 (149)
T 2crw_A 26 VPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRS 61 (149)
T ss_dssp STTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHH
T ss_pred CcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhcc
Confidence 467789999999999999999999999888776643
No 364
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=40.21 E-value=4.2 Score=34.25 Aligned_cols=36 Identities=19% Similarity=0.418 Sum_probs=30.7
Q ss_pred CCCccceeecccCCCcccccccCccccccCCccccc
Q 015431 142 QPEKSICFVCQTSENLWMCVICGFVGCGRYKGGHAI 177 (407)
Q Consensus 142 ~~~~~~C~~C~~~~~l~~Cl~Cg~~~Cgr~~~~Ha~ 177 (407)
.+.+..|..|+.....|.++.-|.+.|.+|.+-|..
T Consensus 22 ~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~ 57 (140)
T 2olm_A 22 LPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRG 57 (140)
T ss_dssp SGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTT
T ss_pred CcCCCcCCCCCCCCCCceeeccCEEEchhccchhcc
Confidence 456788999999999999999999999888877753
No 365
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=40.21 E-value=4.3 Score=33.94 Aligned_cols=36 Identities=25% Similarity=0.454 Sum_probs=30.8
Q ss_pred CCCccceeecccCCCcccccccCccccccCCccccc
Q 015431 142 QPEKSICFVCQTSENLWMCVICGFVGCGRYKGGHAI 177 (407)
Q Consensus 142 ~~~~~~C~~C~~~~~l~~Cl~Cg~~~Cgr~~~~Ha~ 177 (407)
.+.+..|..|+.....|.++.-|.+.|.+|.+.|..
T Consensus 24 ~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~ 59 (134)
T 2iqj_A 24 EEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRN 59 (134)
T ss_dssp SGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHH
T ss_pred CcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhc
Confidence 466789999999999999999999999888877753
No 366
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=40.18 E-value=1.6e+02 Score=24.54 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHHhH
Q 015431 349 DDKIQDSEAQLRDLMAYLE 367 (407)
Q Consensus 349 ~~~i~~Leeq~~dLm~~l~ 367 (407)
..+|.+|+++++.+...|.
T Consensus 100 E~k~~eLEeeL~~~~~nlK 118 (147)
T 2b9c_A 100 EGKCAELEEELKTVTNNLK 118 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456666666666555543
No 367
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=39.97 E-value=96 Score=21.85 Aligned_cols=16 Identities=19% Similarity=0.115 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHh
Q 015431 351 KIQDSEAQLRDLMAYL 366 (407)
Q Consensus 351 ~i~~Leeq~~dLm~~l 366 (407)
+|..|++++..|...|
T Consensus 45 ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 45 EIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555544443
No 368
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=39.82 E-value=42 Score=25.83 Aligned_cols=40 Identities=28% Similarity=0.548 Sum_probs=23.0
Q ss_pred CCCcccccccccccCCCceeeec-----CC-Cccchhcccccc----CCCCCCccc
Q 015431 93 EQPSCPVCLERLDQDTSGILTTI-----CN-HSFHCSCISKWT----DSSCPVCRY 138 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~-----C~-H~F~~~Cl~~w~----~~~CP~Cr~ 138 (407)
+...| ||...... . .+. |. ..||..|+.--. ...||.|+.
T Consensus 35 e~~yC-iC~~~~~g----~-MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~ 84 (91)
T 1weu_A 35 EPTYC-LCHQVSYG----E-MIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQ 84 (91)
T ss_dssp CCBCS-TTCCBCCS----C-CCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCC
T ss_pred CCcEE-ECCCCCCC----C-EeEecCCCCCCCCEecccCCcCcCCCCCEECcCccC
Confidence 45567 99876431 2 334 43 469999985321 255666654
No 369
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=39.75 E-value=23 Score=26.63 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=38.2
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..| ..|..++|.+ -...+.|.+.++|..-...+||..|.
T Consensus 23 ~t~~~l~~~F~~~-G~v~~v~i~~-------g~afV~f~~~~~A~~A~~~l~g~~~~ 71 (96)
T 2kvi_A 23 VSKEDLFRIFSPY-GHIMQINIKN-------AFGFIQFDNPQSVRDAIECESQEMNF 71 (96)
T ss_dssp CCHHHHHHHHTTT-CCCCEEEEET-------TEEEEEESCHHHHHHHHHHHTCSSCB
T ss_pred CCHHHHHHHHHhc-CCEEEEEEeC-------CEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 3566777777776 3477777753 26788999999999999999998765
No 370
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=39.59 E-value=14 Score=27.10 Aligned_cols=36 Identities=25% Similarity=0.671 Sum_probs=23.2
Q ss_pred CCCCcccccccccccCCCce-eeecCCCccchhcccc
Q 015431 92 TEQPSCPVCLERLDQDTSGI-LTTICNHSFHCSCISK 127 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~-~~~~C~H~F~~~Cl~~ 127 (407)
.+...|.||...-..+.... .=-.|.-.||..|+..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~ 50 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGV 50 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTC
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCC
Confidence 46788999987642111112 2236888999999864
No 371
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=39.54 E-value=16 Score=27.38 Aligned_cols=20 Identities=20% Similarity=0.672 Sum_probs=16.1
Q ss_pred cCCCccchhccccccCCCCC
Q 015431 115 ICNHSFHCSCISKWTDSSCP 134 (407)
Q Consensus 115 ~C~H~F~~~Cl~~w~~~~CP 134 (407)
.|++.||..|...|-...|.
T Consensus 55 ~C~~~FC~~C~~~wH~~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHEGECS 74 (80)
T ss_dssp CCSCCEETTTTEECCSSCSS
T ss_pred CCCCeeccccCccccCCccc
Confidence 69999999999999445554
No 372
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=39.52 E-value=1.2e+02 Score=22.82 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 015431 265 LENQKIYYETLLQEAKEET 283 (407)
Q Consensus 265 le~qr~~~E~~l~~l~~~~ 283 (407)
|.+|+..+|..+.+++...
T Consensus 8 L~~q~~~Le~~l~e~E~~~ 26 (86)
T 1x8y_A 8 LQCQLAAKEAKLRDLEDSL 26 (86)
T ss_dssp ----CTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555443
No 373
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=39.45 E-value=23 Score=32.24 Aligned_cols=56 Identities=14% Similarity=0.193 Sum_probs=43.9
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeC-CCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTD-GMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~-~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++.+|-. |..++++++. ...++....+.|.+.++|..-...+||..|.
T Consensus 107 ~t~~~l~~~f~~~G~-i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 163 (284)
T 3smz_A 107 LTQQQFEELVRPFGS-LERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLG 163 (284)
T ss_dssp CCHHHHHHHHGGGSC-EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCHHHHHHHHHhcCC-eeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 466788888887644 8899999853 2334667899999999999999999998764
No 374
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.40 E-value=16 Score=27.58 Aligned_cols=50 Identities=10% Similarity=0.197 Sum_probs=38.1
Q ss_pred CChhHHhHhhHHHH-HhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFI-QHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~-~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- ..|..+++.| -...+.|.+.++|..-...+||..|.
T Consensus 27 ~t~~~l~~~F~~~g~g~v~~~~~~~-------g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (99)
T 2cpd_A 27 TSEEMIEKEFNNIKPGAVERVKKIR-------DYAFVHFSNREDAVEAMKALNGKVLD 77 (99)
T ss_dssp CCHHHHHHHHHTTSTTCEEEEEECS-------SEEEEEESSHHHHHHHHHHHSSEEET
T ss_pred CCHHHHHHHHHhcCCcceEEEEEeC-------CeEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 35677888887773 3456666654 16788999999999999999998764
No 375
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.33 E-value=31 Score=24.87 Aligned_cols=43 Identities=16% Similarity=0.434 Sum_probs=29.3
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhccccccCCCCCCcccccC
Q 015431 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQQ 141 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~ 141 (407)
-.+.|+.|-..+..-.....+..-+..||..| ..|..|...+.
T Consensus 4 ~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C------F~C~~C~~~L~ 46 (76)
T 1x68_A 4 GSSGCVACSKPISGLTGAKFICFQDSQWHSEC------FNCGKCSVSLV 46 (76)
T ss_dssp CCCCCTTTCCCCCTTTTCCEEEETTEEEEGGG------CBCTTTCCBCS
T ss_pred cCCCCccCCCcccCCCCceeEEECCcccCccc------CChhhCCCcCC
Confidence 35789999988773001123445677899999 57888887664
No 376
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=39.17 E-value=12 Score=32.00 Aligned_cols=52 Identities=13% Similarity=0.302 Sum_probs=41.4
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..|-. |.+++|++ +. +-...+.|.+.++|......+||..|.
T Consensus 16 ~~~~~l~~~F~~~G~-i~~v~i~~-~~---~g~afV~f~~~~~a~~A~~~l~~~~~~ 67 (198)
T 1qm9_A 16 VTPQSLFILFGVYGD-VQRVKILF-NK---KENALVQMADGNQAQLAMSHLNGHKLH 67 (198)
T ss_dssp CCHHHHHHHHHTTCC-CSEEECST-TC---SSCCEEECTTTHHHHHHHHHHTTCCCS
T ss_pred CCHHHHHHHHHhcCC-EEEEEEEe-CC---CCEEEEEECCHHHHHHHHHHhCCCeec
Confidence 356788888887754 88999998 33 225889999999999999999998764
No 377
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=39.13 E-value=50 Score=24.01 Aligned_cols=41 Identities=29% Similarity=0.600 Sum_probs=23.5
Q ss_pred CCCCcccccccccccCCCceeeec-----CC-Cccchhcccccc----CCCCCCccc
Q 015431 92 TEQPSCPVCLERLDQDTSGILTTI-----CN-HSFHCSCISKWT----DSSCPVCRY 138 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~-----C~-H~F~~~Cl~~w~----~~~CP~Cr~ 138 (407)
.+...| ||..... +. .+. |. ..||..|+.--. ...||.|+.
T Consensus 14 ~~~~~C-~C~~~~~----g~-MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~ 64 (71)
T 1wen_A 14 NEPTYC-LCHQVSY----GE-MIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQ 64 (71)
T ss_dssp TSCCCS-TTCCCSC----SS-EECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSS
T ss_pred CCCCEE-ECCCCCC----CC-EeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCc
Confidence 355677 8987533 22 444 44 479999985321 245666654
No 378
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=45.28 E-value=6.4 Score=31.03 Aligned_cols=55 Identities=16% Similarity=0.249 Sum_probs=39.9
Q ss_pred ChhHHhHhhHHHHHhhhe--------eEEEeeC-CCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 2 TYADFCQFCASFIQHILE--------MRIVRTD-GMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 2 ~~~d~~~f~~~~~~~i~~--------~r~ir~~-~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
|..|+..|+..|-. |.. ++|+++. ....+-...+.|.+.++|..-...+||..|.
T Consensus 20 t~~~l~~~F~~~G~-i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 20 TIESVADYFKQIGI-IKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 45677777777653 455 7888742 2234557889999999999999999998764
No 379
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.03 E-value=22 Score=25.17 Aligned_cols=39 Identities=23% Similarity=0.473 Sum_probs=28.2
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhccccccCCCCCCcccccC
Q 015431 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQQ 141 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~ 141 (407)
..+.|+.|-..+.. ..+..-+..||..| ..|-.|...+.
T Consensus 4 ~~~~C~~C~~~I~~----~~~~a~~~~~H~~C------F~C~~C~~~L~ 42 (70)
T 2d8x_A 4 GSSGCHQCGEFIIG----RVIKAMNNSWHPEC------FRCDLCQEVLA 42 (70)
T ss_dssp CSSBCSSSCCBCCS----CCEEETTEEECTTT------SBCSSSCCBCS
T ss_pred CCCcCccCCCEecc----eEEEECcccccccC------CEeCCCCCcCC
Confidence 46789999988763 23445577899888 47888877654
No 380
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=38.94 E-value=17 Score=28.32 Aligned_cols=48 Identities=19% Similarity=0.398 Sum_probs=38.2
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQF 56 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f 56 (407)
+|..|+..+++.|- .|..++|++ -...+.|.+.++|..-...+||..|
T Consensus 43 ~t~~~L~~~F~~~G-~i~~v~i~k-------g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (108)
T 2jvo_A 43 VQESELNEIFGPFG-PMKEVKILN-------GFAFVEFEEAESAAKAIEEVHGKSF 90 (108)
T ss_dssp CCHHHHHHHHTTTS-CCCEEEEET-------TEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHhcC-CEEEEEEEC-------CEEEEEECCHHHHHHHHHHcCCCEE
Confidence 35667777777764 477888883 2678999999999999999999876
No 381
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=38.89 E-value=12 Score=41.22 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=39.5
Q ss_pred CCCcccccccccccCCCceeeecCC-Cccchhcccccc--CCCCCCcccccC
Q 015431 93 EQPSCPVCLERLDQDTSGILTTICN-HSFHCSCISKWT--DSSCPVCRYCQQ 141 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~-H~F~~~Cl~~w~--~~~CP~Cr~~~~ 141 (407)
+...|||-++.|.+ |++++-| ++|-..+|.+|. +.+||.-|.+..
T Consensus 890 ~~F~cPIs~~lM~D----PVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~ 937 (968)
T 3m62_A 890 DEFLDPLMYTIMKD----PVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLK 937 (968)
T ss_dssp GGGBCTTTCSBCSS----EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred HHhCCcchhhHHhC----CeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCC
Confidence 67789999999999 9999998 699999999996 478999888764
No 382
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=38.72 E-value=3.2e+02 Score=27.49 Aligned_cols=8 Identities=38% Similarity=0.563 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 015431 272 YETLLQEA 279 (407)
Q Consensus 272 ~E~~l~~l 279 (407)
|+..|+++
T Consensus 14 yq~elarv 21 (497)
T 3iox_A 14 YQTELARV 21 (497)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 383
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=38.24 E-value=1e+02 Score=21.53 Aligned_cols=14 Identities=7% Similarity=0.109 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 015431 351 KIQDSEAQLRDLMA 364 (407)
Q Consensus 351 ~i~~Leeq~~dLm~ 364 (407)
+|..|++++..|..
T Consensus 44 ~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 44 EVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44445555544443
No 384
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=38.14 E-value=42 Score=28.73 Aligned_cols=53 Identities=17% Similarity=0.337 Sum_probs=42.2
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+-.+...| ..|..++|+. +. ++...++.|.+.++|..=....||..|.
T Consensus 58 vted~L~~~Fs~f-G~V~~V~i~~-k~--~rgfAFVeF~d~~~A~~Ai~~LnG~~i~ 110 (164)
T 1sjr_A 58 VTLDVLHQIFSKF-GTVLKIITFT-KN--NQFQALLQYADPVSAQHAKLSLDGQNIY 110 (164)
T ss_dssp CCHHHHHHHHHHH-SCEEEEEEEE-SS--SCEEEEEEESCHHHHHHHHHHSTTBCSS
T ss_pred CCHHHHHHHHHhc-CCEEEEEEEe-CC--CCCEEEEEECCHHHHHHHHHHhCCCEec
Confidence 3556777777777 5688899875 32 4667889999999999999999999764
No 385
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=38.07 E-value=59 Score=23.60 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=16.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 015431 339 EREKMALRAKDDKIQDSEAQLRDLMAYL 366 (407)
Q Consensus 339 ~~~~~~~~~~~~~i~~Leeq~~dLm~~l 366 (407)
.+++..+..++..|++|+.++..+-.-+
T Consensus 28 ~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 28 KELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444456667778888887776554433
No 386
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=37.99 E-value=4.8 Score=33.78 Aligned_cols=36 Identities=22% Similarity=0.600 Sum_probs=30.4
Q ss_pred CCCccceeecccCCCcccccccCccccccCCccccc
Q 015431 142 QPEKSICFVCQTSENLWMCVICGFVGCGRYKGGHAI 177 (407)
Q Consensus 142 ~~~~~~C~~C~~~~~l~~Cl~Cg~~~Cgr~~~~Ha~ 177 (407)
.+.+..|..|+.....|..+.=|.+.|.+|.+-|..
T Consensus 33 ~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~ 68 (138)
T 2owa_A 33 RPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRK 68 (138)
T ss_dssp SGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHT
T ss_pred CcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhC
Confidence 466789999999999999999999999888777753
No 387
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=37.97 E-value=2.8e+02 Score=27.22 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 015431 348 KDDKIQDSEAQLRDLMAYL 366 (407)
Q Consensus 348 ~~~~i~~Leeq~~dLm~~l 366 (407)
.+..|..|++.+..|+...
T Consensus 117 ~~~~i~~L~~~v~~l~~~~ 135 (411)
T 3ghg_C 117 NNQKIVNLKEKVAQLEAQC 135 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3445666666666665543
No 388
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=37.84 E-value=8.3 Score=41.66 Aligned_cols=77 Identities=19% Similarity=0.250 Sum_probs=47.3
Q ss_pred CccceeecccCC--CcccccccCccccc-c--CCccccccccccCCceeEe-----ecCceeEEeccCCc---chhhhhh
Q 015431 144 EKSICFVCQTSE--NLWMCVICGFVGCG-R--YKGGHAIIHWKETEHCYSL-----ELETQRVWDYAGDN---YVHRLIQ 210 (407)
Q Consensus 144 ~~~~C~~C~~~~--~l~~Cl~Cg~~~Cg-r--~~~~Ha~~H~~~t~H~~~~-----~l~~~~v~cy~cd~---~vhrl~~ 210 (407)
+...|..|+..+ .+-.|..|+.+.|. + ..+.|...|...+.|.-.. .+....+=||.|.. |+--.+.
T Consensus 5 ~~~~c~~c~~~~~~~~~~~~~~~~~fcn~~~~~~~shi~~h~~~~~~~~~~~~~~~~~~~~~~ec~~c~~~n~f~lg~~~ 84 (800)
T 2wjy_A 5 PIHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIP 84 (800)
T ss_dssp CTTSCTTTCCCCGGGEEEETTTTEEEESCCTTSSSCHHHHHHHHHTCCCEEECTTSTTCSCBCCCTTTCCCCTTTCEEEC
T ss_pred CchhccccCCCCCCeEEEcCCCCCccccCCCCCcccHHHHHHHHccCceEecCCCCCCCCceEEEeccCCCceeeeecee
Confidence 446788998875 55669999999994 2 3478888887777775332 13356778999843 3333455
Q ss_pred hcccCceeee
Q 015431 211 SKTDGKLVEL 220 (407)
Q Consensus 211 ~~~dgkl~e~ 220 (407)
.+.|...|-+
T Consensus 85 ~~~~~~~~~~ 94 (800)
T 2wjy_A 85 AKADSVVVLL 94 (800)
T ss_dssp -----CCEEC
T ss_pred cccCceEEEE
Confidence 5656555443
No 389
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=37.63 E-value=21 Score=24.96 Aligned_cols=38 Identities=16% Similarity=0.390 Sum_probs=28.2
Q ss_pred CCcccccccccccCCCceeeecCCCccchhccccccCCCCCCcccccC
Q 015431 94 QPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQQ 141 (407)
Q Consensus 94 ~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~ 141 (407)
.+.|+.|...+.. ..+..-+..||..| ..|..|...+.
T Consensus 5 ~~~C~~C~~~I~~----~~~~a~~~~~H~~C------F~C~~C~~~L~ 42 (66)
T 1nyp_A 5 VPICGACRRPIEG----RVVNAMGKQWHVEH------FVCAKCEKPFL 42 (66)
T ss_dssp CCEETTTTEECCS----CEECCTTSBEETTT------CBCTTTCCBCS
T ss_pred CCCCcccCCEecc----eEEEECccccccCc------CEECCCCCCCC
Confidence 5789999988763 34455678899988 47888887654
No 390
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=37.26 E-value=25 Score=26.67 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=37.2
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..+++.|- .|..++|.+ -...+.|.+.++|..-...+||..|.
T Consensus 35 ~t~~~L~~~F~~~G-~v~~v~i~~-------g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (97)
T 2xnq_A 35 VSKEDLFRIFSPYG-HIMQINIKN-------AFGFIQFDNPQSVRDAIEXESQEMNF 83 (97)
T ss_dssp CCHHHHHHHHGGGS-CEEEEEECS-------SEEEEEESSHHHHHHHHHHHTTSEET
T ss_pred CCHHHHHHHHHhcC-CEEEEEEeC-------CEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 35677888877763 366666632 36789999999999999999998764
No 391
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.13 E-value=5.7 Score=33.46 Aligned_cols=36 Identities=22% Similarity=0.421 Sum_probs=30.1
Q ss_pred CCCccceeecccCCCcccccccCccccccCCccccc
Q 015431 142 QPEKSICFVCQTSENLWMCVICGFVGCGRYKGGHAI 177 (407)
Q Consensus 142 ~~~~~~C~~C~~~~~l~~Cl~Cg~~~Cgr~~~~Ha~ 177 (407)
.+.+..|..|+.....|.++.-|.+.|.+|.+-|..
T Consensus 26 ~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~ 61 (141)
T 2crr_A 26 EEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRN 61 (141)
T ss_dssp SGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHH
T ss_pred CccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhc
Confidence 356678999999989999999999999888776653
No 392
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=37.10 E-value=16 Score=28.71 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=42.2
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeC--CCCCeeE-EEEeccChhhHhhHhhhcCCcccccCCC
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTD--GMDDQYS-VLIRFDSQDSADKFYQHFNGRQFNSLEE 61 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~--~~~~~y~-vll~f~~~~~a~~f~~~~~g~~f~~l~~ 61 (407)
||-++|+.-++++.+ +.-.+.+.-+ ..|+.|. +-|.|.+.++..+|...|+|..|-.-..
T Consensus 21 Ltee~F~~~l~~~~~-~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg 83 (97)
T 2l08_A 21 LTKEQLEEQLRPLPA-HDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKG 83 (97)
T ss_dssp SCHHHHTTTTSCCSS-EEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTC
T ss_pred CCHHHHHHHhCCcCc-cceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCC
Confidence 566778888887644 3344444322 1344544 6899999999999999999999965543
No 393
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=37.07 E-value=5.1 Score=33.89 Aligned_cols=36 Identities=25% Similarity=0.575 Sum_probs=30.3
Q ss_pred CCCccceeecccCCCcccccccCccccccCCccccc
Q 015431 142 QPEKSICFVCQTSENLWMCVICGFVGCGRYKGGHAI 177 (407)
Q Consensus 142 ~~~~~~C~~C~~~~~l~~Cl~Cg~~~Cgr~~~~Ha~ 177 (407)
.|.+..|..|+.....|.++.-|.+.|.+|.+.|..
T Consensus 34 ~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~ 69 (144)
T 2p57_A 34 VPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRS 69 (144)
T ss_dssp SGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHH
T ss_pred CCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcC
Confidence 456789999999999999999999999888776643
No 394
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=37.01 E-value=1.4e+02 Score=29.47 Aligned_cols=15 Identities=27% Similarity=0.678 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHHHHH
Q 015431 349 DDKIQDSEAQLRDLM 363 (407)
Q Consensus 349 ~~~i~~Leeq~~dLm 363 (407)
+++..++++++.+++
T Consensus 84 ~~~~~~~~~~~~~~~ 98 (421)
T 1ses_A 84 EEALREKEARLEALL 98 (421)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 395
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.93 E-value=27 Score=26.19 Aligned_cols=40 Identities=18% Similarity=0.400 Sum_probs=30.2
Q ss_pred CCCCcccccccccccCCCceeeecCCCccchhccccccCCCCCCcccccC
Q 015431 92 TEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQQ 141 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~ 141 (407)
...+.|+.|-..+.. ..+..-+..||..| ..|..|...+.
T Consensus 23 ~~~~~C~~C~~~I~~----~~v~a~~~~~H~~C------F~C~~C~~~L~ 62 (90)
T 2dar_A 23 KRTPMCAHCNQVIRG----PFLVALGKSWHPEE------FNCAHCKNTMA 62 (90)
T ss_dssp TCCCBBSSSCCBCCS----CEEEETTEEECTTT------CBCSSSCCBCS
T ss_pred CCCCCCccCCCEecc----eEEEECCccccccC------CccCCCCCCCC
Confidence 356889999998853 34456688999999 57888887664
No 396
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=36.74 E-value=33 Score=26.21 Aligned_cols=37 Identities=19% Similarity=0.437 Sum_probs=27.3
Q ss_pred CCCCcccccccccccCCCceeeecCCCccchhccccc
Q 015431 92 TEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKW 128 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w 128 (407)
.+...|.+|...|......-.=-.||..||..|...+
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 4677899999999753322334589999999997664
No 397
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.61 E-value=9.1 Score=28.68 Aligned_cols=15 Identities=27% Similarity=0.634 Sum_probs=11.1
Q ss_pred CCCCccccccccccc
Q 015431 92 TEQPSCPVCLERLDQ 106 (407)
Q Consensus 92 ~e~~~C~iCle~~~~ 106 (407)
.....|..|.+.|.-
T Consensus 23 ~~~r~CarC~~~LG~ 37 (76)
T 2csz_A 23 YSDRTCARCQESLGR 37 (76)
T ss_dssp CCCCBCSSSCCBCSS
T ss_pred CCccchhhhCccccc
Confidence 456788889888763
No 398
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=36.59 E-value=1.9e+02 Score=24.28 Aligned_cols=13 Identities=8% Similarity=0.319 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 015431 350 DKIQDSEAQLRDL 362 (407)
Q Consensus 350 ~~i~~Leeq~~dL 362 (407)
.+|..+..+++..
T Consensus 131 ~rv~~vkkeL~~h 143 (152)
T 4fla_A 131 ARVTQVRKELKSH 143 (152)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444455444443
No 399
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=36.59 E-value=16 Score=28.71 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=39.2
Q ss_pred ChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCccc
Q 015431 2 TYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQF 56 (407)
Q Consensus 2 ~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f 56 (407)
|-.|+....++| ..|..+++++ + +-...+.|.+.++|..-...+||.++
T Consensus 34 te~~L~~lF~~f-G~V~~v~i~~-~----kg~AFVef~~~~~A~~Av~~ln~~~~ 82 (100)
T 3r27_A 34 VEADLVEALQEF-GPISYVVVMP-K----KRQALVEFEDVLGACNAVNYAADNQI 82 (100)
T ss_dssp CHHHHHHHHGGG-SCEEEEEEET-T----TTEEEEEESSHHHHHHHHHHHHHSCE
T ss_pred CHHHHHHHHhcc-CCEEEEEEEc-C----CCEEEEEECCHHHHHHHHHHhcCCCc
Confidence 557788888887 4688999997 2 33789999999999999998888753
No 400
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=36.50 E-value=2.6e+02 Score=25.89 Aligned_cols=19 Identities=26% Similarity=0.188 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 015431 327 QEMWKAKISEIEEREKMAL 345 (407)
Q Consensus 327 ~~~l~~kl~~~~~~~~~~~ 345 (407)
.+.+.+|++++....+..+
T Consensus 179 EEea~~K~eeAd~~Y~~~V 197 (279)
T 3qwe_A 179 REEAQAKAQEAEALYQACV 197 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554443
No 401
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.49 E-value=28 Score=25.04 Aligned_cols=40 Identities=18% Similarity=0.396 Sum_probs=29.5
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhccccccCCCCCCcccccC
Q 015431 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQQ 141 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~ 141 (407)
..+.|+.|...+.... .+..-+..||..| ..|..|...+.
T Consensus 8 ~~~~C~~C~~~I~~~~---~v~a~~~~~H~~C------F~C~~C~~~L~ 47 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAE---KVSSLGKDWHKFC------LKCERCSKTLT 47 (76)
T ss_dssp CCCBCTTTCCBCCTTT---EEEETTEEEETTT------CBCSSSCCBCC
T ss_pred CCCCCcCCCCEeECCe---EEEECCeEeeCCC------CCCCCCCCccC
Confidence 4689999999887422 3345678899998 57888888764
No 402
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.35 E-value=27 Score=26.01 Aligned_cols=31 Identities=29% Similarity=0.695 Sum_probs=19.1
Q ss_pred cccccccccccCCCceeeecCCCccchhcccc
Q 015431 96 SCPVCLERLDQDTSGILTTICNHSFHCSCISK 127 (407)
Q Consensus 96 ~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~ 127 (407)
.|.||...-+. ..-+.=-.|...||..|+.+
T Consensus 28 ~C~vC~~~~~~-~~ll~CD~C~~~yH~~Cl~P 58 (77)
T 2e6s_A 28 SCRVCGGKHEP-NMQLLCDECNVAYHIYCLNP 58 (77)
T ss_dssp SCSSSCCCCCS-TTEEECSSSCCEEETTSSSS
T ss_pred CCcCcCCcCCC-CCEEEcCCCCccccccccCC
Confidence 67888754221 11122237888999999875
No 403
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=36.31 E-value=1.7e+02 Score=23.64 Aligned_cols=53 Identities=19% Similarity=0.216 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHhH
Q 015431 315 FLDDLNENLLKNQEMWKAKISEIEEREKMA---LRAKDDKIQDSEAQLRDLMAYLE 367 (407)
Q Consensus 315 ~l~eln~~l~~~~~~l~~kl~~~~~~~~~~---~~~~~~~i~~Leeq~~dLm~~l~ 367 (407)
...+....|......+..++..+..++... .......-..|+.++.+|.--|+
T Consensus 66 e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 66 DAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555444331 11222333445555555554444
No 404
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=36.18 E-value=86 Score=27.29 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=16.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHH
Q 015431 341 EKMALRAKDDKIQDSEAQLRDLMA 364 (407)
Q Consensus 341 ~~~~~~~~~~~i~~Leeq~~dLm~ 364 (407)
+...+..++.+|.+|..+|.||+.
T Consensus 84 lE~kvkkqdyEI~dL~~rV~DLrG 107 (180)
T 1j1e_C 84 IEAKVTKNITEIADLTQKIFDLRG 107 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcchhHHHHHHHHHHHHh
Confidence 445556667788888888888863
No 405
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=36.13 E-value=19 Score=27.82 Aligned_cols=49 Identities=10% Similarity=0.158 Sum_probs=37.7
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..++|- +-...+.|.+.++|......+||..|.
T Consensus 40 ~t~~~l~~~F~~~G-~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~ 88 (110)
T 1wf1_A 40 VKKSDVETIFSKYG-RVAGCSVH-------KGYAFVQYSNERHARAAVLGENGRVLA 88 (110)
T ss_dssp CCHHHHHHHHGGGS-CCSEEEEE-------TTEEEEECSSSHHHHHHHHHHTTCEET
T ss_pred CCHHHHHHHHHhCC-CeEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 35677888887764 46777771 236788999999999999999998764
No 406
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=36.09 E-value=2.3e+02 Score=25.12 Aligned_cols=75 Identities=20% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHhhhHHHHHHHHHH
Q 015431 284 EKIISEAVKKAIAQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEERE----KMALRAKDDKIQDSEAQL 359 (407)
Q Consensus 284 ~~~l~~~~~~~~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~----~~~~~~~~~~i~~Leeq~ 359 (407)
.+.+.+-..-++.. ...++++...+.++...+..-.+.|.+..+.+-...++.+.++ -..+-.|..+|++|+.++
T Consensus 120 ~e~i~elfd~~~~~-~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~L 198 (213)
T 1ik9_A 120 AEVIRELIAYALDT-IAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLHNKL 198 (213)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
No 407
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=36.02 E-value=52 Score=26.55 Aligned_cols=19 Identities=11% Similarity=0.321 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 015431 297 QKLQKMQAKLDRCVREKKF 315 (407)
Q Consensus 297 ~~l~~l~~~l~~~~~e~~~ 315 (407)
+.++.|+++|+.+...+..
T Consensus 10 ~Eiq~L~drLD~~~rKlaa 28 (123)
T 2lf0_A 10 NEIKRLSDRLDAIRHQQAD 28 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666666666554443
No 408
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=35.82 E-value=32 Score=28.99 Aligned_cols=54 Identities=6% Similarity=0.086 Sum_probs=40.3
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQF 56 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f 56 (407)
+|..|+..|+..|- .|.+++|+++.. ...+-...+.|.+.++|...... +|..|
T Consensus 25 ~te~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~ 79 (196)
T 1l3k_A 25 TTDESLRSHFEQWG-TLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKV 79 (196)
T ss_dssp CCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEE
T ss_pred CCHHHHHHHHHhCC-CEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEE
Confidence 46778888888874 488999999532 22455788999999999998876 55543
No 409
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=35.79 E-value=6.8 Score=33.22 Aligned_cols=36 Identities=31% Similarity=0.612 Sum_probs=30.7
Q ss_pred CCCccceeecccCCCcccccccCccccccCCccccc
Q 015431 142 QPEKSICFVCQTSENLWMCVICGFVGCGRYKGGHAI 177 (407)
Q Consensus 142 ~~~~~~C~~C~~~~~l~~Cl~Cg~~~Cgr~~~~Ha~ 177 (407)
.+.+..|..|+.....|....=|.+.|.+|.+.|..
T Consensus 35 ~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~ 70 (147)
T 3dwd_A 35 QDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRG 70 (147)
T ss_dssp STTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHH
T ss_pred CcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhc
Confidence 467789999999999999999999999888777753
No 410
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=35.44 E-value=14 Score=26.26 Aligned_cols=41 Identities=27% Similarity=0.571 Sum_probs=23.3
Q ss_pred CcccccccccccCCCceeeecCCCccchhccccccC--CCCCCc
Q 015431 95 PSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD--SSCPVC 136 (407)
Q Consensus 95 ~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~--~~CP~C 136 (407)
..|-.|+..|.+ .+...-..|.+.||.+|-.-.-. ..||.|
T Consensus 16 ~~C~~C~~~~~~-~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKD-QHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTT-SEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCC-CccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 358888887753 11133456777777777433211 456666
No 411
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=35.37 E-value=20 Score=28.73 Aligned_cols=43 Identities=19% Similarity=0.259 Sum_probs=34.6
Q ss_pred HhhheeEEEeeCCC-----CCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 15 QHILEMRIVRTDGM-----DDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 15 ~~i~~~r~ir~~~~-----~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
..|.+++|+++..+ +.+--+.+.|.+.++|..-...+||+.|.
T Consensus 50 G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 50 GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp SCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 36889999985321 23456899999999999999999999884
No 412
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.34 E-value=25 Score=25.32 Aligned_cols=39 Identities=18% Similarity=0.428 Sum_probs=28.0
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhccccccCCCCCCcccccC
Q 015431 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQQ 141 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~ 141 (407)
..+.|+.|-..+.. ..+..-+..||..| ..|-.|...+.
T Consensus 4 ~~~~C~~C~~~I~~----~~v~a~~~~wH~~C------F~C~~C~~~L~ 42 (73)
T 1wig_A 4 GSSGCDSCEKYITG----RVLEAGEKHYHPSC------ALCVRCGQMFA 42 (73)
T ss_dssp SCCSCSSSCCCCSS----CCBCCSSCCBCTTT------SCCSSSCCCCC
T ss_pred CcCCcccCCCEecC----eeEEeCCCCCCCCc------CEeCCCCCCCC
Confidence 35789999988764 23445678899888 47888877653
No 413
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=35.30 E-value=50 Score=26.64 Aligned_cols=55 Identities=13% Similarity=0.263 Sum_probs=40.7
Q ss_pred CChhHHhHhhHHHHH-------hhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQ-------HILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~-------~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|-. .+..+++.++. ..+-...+.|.+..+|..-...+||..|.
T Consensus 57 ~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g--~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 57 VQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEG--RMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEET--TTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCHHHHHHHHHHhCCcccccccceeeEEeccCC--CcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 456778888877642 23446666633 35678889999999999999999998764
No 414
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.28 E-value=40 Score=24.58 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=29.2
Q ss_pred CCCCcccccccccccCCCceeeecCCCccchhccccccCCCCCCcccccC
Q 015431 92 TEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQQ 141 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~ 141 (407)
...+.|+.|-..+.. ..+..-+..||..| ..|..|...+.
T Consensus 13 ~~~~~C~~C~~~I~~----~~v~a~~~~~H~~C------F~C~~C~~~L~ 52 (79)
T 2cor_A 13 LGKYICQKCHAIIDE----QPLIFKNDPYHPDH------FNCANCGKELT 52 (79)
T ss_dssp CCCCBCTTTCCBCCS----CCCCCSSSCCCTTT------SBCSSSCCBCC
T ss_pred cCCCCCccCCCEecc----eEEEECcceeCCCC------CEeCCCCCccC
Confidence 456899999988773 23445577899888 57888887664
No 415
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=35.14 E-value=1.4e+02 Score=22.32 Aligned_cols=9 Identities=11% Similarity=-0.019 Sum_probs=3.3
Q ss_pred hhhHHHHHH
Q 015431 347 AKDDKIQDS 355 (407)
Q Consensus 347 ~~~~~i~~L 355 (407)
..+-+|.+|
T Consensus 56 ~Ld~KI~eL 64 (79)
T 3cvf_A 56 LLDVSLFEL 64 (79)
T ss_dssp HHHHHHHHH
T ss_pred HHhhHHHHH
Confidence 333333333
No 416
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=35.10 E-value=17 Score=28.22 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=36.5
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHF 51 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~ 51 (407)
+|..|+..++..|- .|..++|+++.. ..++-...+.|.+.++|..-....
T Consensus 37 ~te~~L~~~F~~~G-~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~ 87 (109)
T 2rs2_A 37 TTQEGLREYFGQFG-EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 87 (109)
T ss_dssp CCHHHHHHHHTTTS-CEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS
T ss_pred CCHHHHHHHHHccC-CeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC
Confidence 35677777877763 588899998532 234557788999999999888654
No 417
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=35.10 E-value=43 Score=26.93 Aligned_cols=41 Identities=17% Similarity=0.434 Sum_probs=30.1
Q ss_pred CCCCCcccccccccccCCCceeeecCCCccchhccccccCCCCCCccccc
Q 015431 91 STEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQ 140 (407)
Q Consensus 91 ~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~ 140 (407)
....+.|+.|-..+... .++..-+..||..| ..|-.|...+
T Consensus 58 ~~~~~~C~~C~~~I~~~---~~v~a~~~~wH~~C------F~C~~C~~~L 98 (123)
T 2l4z_A 58 GLSWKRCAGCGGKIADR---FLLYAMDSYWHSRC------LKCSSCQAQL 98 (123)
T ss_dssp CSSCSBBSSSSSBCCSS---SEEEETTEEEETTT------SBCTTTCCBG
T ss_pred CccCCcCcCCCCCcCCc---EEEEeCCcEEcccc------cCcCcCCCcc
Confidence 34578999999887741 23445678899999 5788888765
No 418
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.08 E-value=30 Score=24.51 Aligned_cols=41 Identities=17% Similarity=0.355 Sum_probs=29.5
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhccccccCCCCCCcccccC
Q 015431 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQQ 141 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~ 141 (407)
..+.|+.|...+.... .++..-+..||..| ..|..|...+.
T Consensus 4 ~~~~C~~C~~~I~~~~--~~~~a~~~~~H~~C------F~C~~C~~~L~ 44 (72)
T 1wyh_A 4 GSSGCSACGETVMPGS--RKLEYGGQTWHEHC------FLCSGCEQPLG 44 (72)
T ss_dssp CCCBCSSSCCBCCSSS--CEECSTTCCEETTT------CBCTTTCCBTT
T ss_pred cCCCCccCCCccccCc--cEEEECccccCccc------CeECCCCCcCC
Confidence 3578999999887421 34555678899988 47888877664
No 419
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=35.04 E-value=6.6 Score=29.60 Aligned_cols=53 Identities=17% Similarity=0.249 Sum_probs=36.4
Q ss_pred ChhHHh----HhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 2 TYADFC----QFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 2 ~~~d~~----~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
|..|+. .+++.|- .|..++|+++ + .++-...+.|.+.++|..-...+||..|.
T Consensus 21 ~~~~l~~~l~~~f~~~G-~i~~v~i~~~-~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (97)
T 1nu4_A 21 KKDELKKSLHAIFSRFG-QILDILVSRS-L-KMRGQAFVIFKEVSSATNALRSMQGFPFY 77 (97)
T ss_dssp CHHHHHHHHHHHHGGGS-CEEEEECCHH-H-HHTTCEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CHHHHHHHHHHHHHhCC-CEEEEEEEcC-C-CcCcEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 455666 4444432 4666777652 1 23346788999999999999999998763
No 420
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=34.97 E-value=33 Score=31.05 Aligned_cols=51 Identities=16% Similarity=0.233 Sum_probs=41.3
Q ss_pred ChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 2 TYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 2 ~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
|..|+..++..| ..|..++|++ +. +-...+.|.+.++|..-...+||..|.
T Consensus 220 ~~~~l~~~F~~~-G~i~~v~~~~-~~---~g~afV~f~~~~~A~~A~~~l~g~~~~ 270 (282)
T 3pgw_A 220 NELMLSMLFNQF-PGFKEVRLVP-GR---HDIAFVEFDNEVQAGAARDALQGFKIT 270 (282)
T ss_pred CHHHHHHHHHhc-CCeEEEEEec-CC---CcEEEEEeCCHHHHHHHHHHcCCcEeC
Confidence 566788888776 5688899997 32 238899999999999999999998775
No 421
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.93 E-value=37 Score=23.84 Aligned_cols=39 Identities=21% Similarity=0.435 Sum_probs=28.4
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhccccccCCCCCCcccccC
Q 015431 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQQ 141 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~ 141 (407)
..+.|+.|...+.. ..+..-+..||..| ..|..|...+.
T Consensus 4 ~~~~C~~C~~~I~~----~~~~a~~~~~H~~C------F~C~~C~~~L~ 42 (70)
T 2d8z_A 4 GSSGCVQCKKPITT----GGVTYREQPWHKEC------FVCTACRKQLS 42 (70)
T ss_dssp CCCBCSSSCCBCCS----SEEESSSSEEETTT------SBCSSSCCBCT
T ss_pred CCCCCcccCCeecc----ceEEECccccCCCC------CccCCCCCcCC
Confidence 35789999988764 22445678899988 47888887653
No 422
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=34.84 E-value=20 Score=31.79 Aligned_cols=53 Identities=13% Similarity=0.167 Sum_probs=42.4
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|--.|..++|++.+ +-...+.|.+.++|..-...+||..|.
T Consensus 163 ~t~~~l~~~f~~~G~~i~~v~i~~~~----~g~afV~f~~~~~A~~Ai~~l~g~~~~ 215 (229)
T 2adc_A 163 VSEEDLKVLFSSNGGVVKGFKFFQKD----RKMALIQMGSVEEAVQALIDLHNHDLG 215 (229)
T ss_dssp CCHHHHHHHHHTTSCCEEEEEECSSS----TTCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCHHHHHHHHHHcCCCeeEEEEEECC----CcEEEEEECCHHHHHHHHHHHCCCccC
Confidence 35678888888883278889998732 337889999999999999999998874
No 423
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.76 E-value=41 Score=25.16 Aligned_cols=52 Identities=10% Similarity=0.230 Sum_probs=38.5
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|-. |. ++++.. . ++-...+.|.+..+|..-...+||..|.
T Consensus 31 ~t~~~l~~~F~~~G~-v~-~~~~~~-~--~~g~afV~f~~~~~a~~A~~~l~g~~~~ 82 (97)
T 2e5j_A 31 ARVSDLKRALRELGS-VP-LRLTWQ-G--PRRRAFLHYPDSAAAQQAVSCLQGLRLG 82 (97)
T ss_dssp CCHHHHHHHHHHTTC-CC-SEEEEE-T--TTTEEEEECSSHHHHHHHHHHHTTCCSS
T ss_pred CcHHHHHHHHHhcCC-EE-EEEEcC-C--CCcEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 356778888877754 33 677763 2 3336788999999999999999998764
No 424
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=34.67 E-value=18 Score=32.90 Aligned_cols=13 Identities=31% Similarity=0.897 Sum_probs=6.7
Q ss_pred cCCCccchhcccc
Q 015431 115 ICNHSFHCSCISK 127 (407)
Q Consensus 115 ~C~H~F~~~Cl~~ 127 (407)
.|...||..|+.+
T Consensus 194 ~C~~~yH~~CL~P 206 (226)
T 3ask_A 194 ECDMAFHIYCLDP 206 (226)
T ss_dssp SSCCEECSCC--C
T ss_pred CCCcceeCccCCC
Confidence 4556666666653
No 425
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=34.53 E-value=21 Score=24.28 Aligned_cols=42 Identities=19% Similarity=0.405 Sum_probs=23.5
Q ss_pred cccccccccccCCCceeee-cCCCccchhccccc------cCCCCCCcc
Q 015431 96 SCPVCLERLDQDTSGILTT-ICNHSFHCSCISKW------TDSSCPVCR 137 (407)
Q Consensus 96 ~C~iCle~~~~~~~~~~~~-~C~H~F~~~Cl~~w------~~~~CP~Cr 137 (407)
.|.+|...++++..-+.=- .|..-||..|+.-. ....||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 5788877765422111112 46667999997532 225666664
No 426
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=34.48 E-value=19 Score=28.68 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=32.3
Q ss_pred hhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 16 HILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 16 ~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
.|.+++|.++. .+--+.+.|.+.++|..-....||+.|+
T Consensus 43 ~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 43 GVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 57788888732 2446899999999999999999999885
No 427
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=34.47 E-value=1e+02 Score=29.36 Aligned_cols=56 Identities=11% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 015431 300 QKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDLMAYL 366 (407)
Q Consensus 300 ~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dLm~~l 366 (407)
+.+..+..++.+++..++.+-.....++..|+..++. .+.+|.+|+.+|.+|+..+
T Consensus 1 ~~~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~-----------~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 1 DSGQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRV-----------NQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
No 428
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=34.15 E-value=34 Score=28.84 Aligned_cols=54 Identities=17% Similarity=0.262 Sum_probs=39.3
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQF 56 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f 56 (407)
+|..|+..|+..| ..|..++|+++.. ..++-...+.|.+.++|..-... +|..|
T Consensus 116 ~t~~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~ 170 (196)
T 1l3k_A 116 TEEHHLRDYFEQY-GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTV 170 (196)
T ss_dssp CCHHHHHHHHTTT-SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEE
T ss_pred CCHHHHHHHHhcC-CCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEE
Confidence 3567788888776 4588999998532 23466789999999999887765 66544
No 429
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=33.92 E-value=18 Score=27.08 Aligned_cols=51 Identities=22% Similarity=0.311 Sum_probs=36.9
Q ss_pred ChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 2 TYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 2 ~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
|..|+..++..| ..+++++ .....+-...+.|.+.++|..-...+||..|.
T Consensus 29 t~~~l~~~F~~~----g~v~~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 79 (96)
T 1fjc_A 29 TEDELKEVFEDA----LEIRLVS-QDGKSKGIAYIEFKSEADAEKNLEEKQGAEID 79 (96)
T ss_dssp CHHHHHHHHCSE----EEECCEE-ETTEEEEEEEEEESSHHHHHHHHHHTTEEEET
T ss_pred CHHHHHHHHhhC----CcEEEeC-CCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 456666666654 4566663 33345667899999999999999999997653
No 430
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=33.86 E-value=18 Score=29.76 Aligned_cols=55 Identities=11% Similarity=0.295 Sum_probs=39.9
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeC-CCCCeeEEEEeccChhhHhhHhhh---cCCccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTD-GMDDQYSVLIRFDSQDSADKFYQH---FNGRQF 56 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~-~~~~~y~vll~f~~~~~a~~f~~~---~~g~~f 56 (407)
+|..|+..|+.+|- .|.+++|+++. ...++-...+.|.+.++|...... ++|+..
T Consensus 15 ~t~~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i 73 (167)
T 2cjk_A 15 TTEDNLREYFGKYG-TVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVI 73 (167)
T ss_dssp CCHHHHHHHHTTTC-CEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEEC
T ss_pred CCHHHHHHHHHhCC-CEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEc
Confidence 46678888887764 58899999852 223445678899999999988876 666543
No 431
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=33.84 E-value=21 Score=28.47 Aligned_cols=51 Identities=20% Similarity=0.326 Sum_probs=39.2
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|- .|..++|++ ++-...+.|.+.++|..-...+||..|.
T Consensus 49 ~te~~L~~~F~~~G-~I~~v~i~~-----~kg~aFV~f~~~~~A~~Ai~~lng~~~~ 99 (121)
T 2bz2_A 49 MTPTLLRGAFSPFG-NIIDLSMDP-----PRNCAFVTYEKMESADQAVAELNGTQVE 99 (121)
T ss_dssp CCHHHHHHHHSTTC-CCSCEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCBCS
T ss_pred CCHHHHHHHHHccC-CEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 35667777777764 477888874 3336788999999999999999998763
No 432
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=33.40 E-value=52 Score=32.38 Aligned_cols=8 Identities=25% Similarity=0.497 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q 015431 355 SEAQLRDL 362 (407)
Q Consensus 355 Leeq~~dL 362 (407)
|..++.||
T Consensus 50 l~n~~~el 57 (403)
T 4etp_A 50 LHNELQEL 57 (403)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 44444444
No 433
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=33.36 E-value=38 Score=29.48 Aligned_cols=56 Identities=16% Similarity=0.110 Sum_probs=42.8
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|-.|+..|+..|- .|.+++|+++.. ..++-...+.|.+.++|..-...+||..+.
T Consensus 27 ~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~ 83 (213)
T 4f02_A 27 VTEAMLYEKFSPAG-PILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIK 83 (213)
T ss_dssp CCHHHHHHHHGGGS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCHHHHHHHHHhhC-CEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcC
Confidence 45677888887764 588999999432 224556889999999999999989987653
No 434
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.29 E-value=27 Score=24.57 Aligned_cols=39 Identities=18% Similarity=0.399 Sum_probs=27.8
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhccccccCCCCCCcccccC
Q 015431 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQQ 141 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~ 141 (407)
..+.|+.|...+.. ..+..-+..||..| ..|..|...+.
T Consensus 4 ~~~~C~~C~~~I~~----~~~~a~~~~~H~~C------F~C~~C~~~L~ 42 (69)
T 2cur_A 4 GSSGCVKCNKAITS----GGITYQDQPWHADC------FVCVTCSKKLA 42 (69)
T ss_dssp CCCCCSSSCCCCCT----TCEEETTEEECTTT------TBCTTTCCBCT
T ss_pred CcCCCcccCCEeCc----ceEEECccccccCc------CEECCCCCCCC
Confidence 45789999988764 12334577899888 47888887654
No 435
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.19 E-value=18 Score=26.95 Aligned_cols=51 Identities=12% Similarity=0.171 Sum_probs=38.4
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCC-cccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNG-RQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g-~~f~ 57 (407)
+|..|+..++..|-.-|..+++.. +-...+.|.+.++|..-...+|| ..|.
T Consensus 20 ~t~~~l~~~F~~~G~vv~~~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~ 71 (93)
T 2cqh_A 20 VTADDLRQLFGDRKLPLAGQVLLK------SGYAFVDYPDQNWAIRAIETLSGKVELH 71 (93)
T ss_dssp CCHHHHHHHHHHTTCCCSSCEEEE------TTEEEECCSCHHHHHHHHHHHTTTCEET
T ss_pred CCHHHHHHHHHHcCCceEEEEEcC------CCEEEEEECCHHHHHHHHHHccCCeeEC
Confidence 466788888888765566665532 22678899999999999999999 6553
No 436
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=33.07 E-value=1.7e+02 Score=23.64 Aligned_cols=48 Identities=8% Similarity=0.111 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q 015431 299 LQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREKMALRAKD 349 (407)
Q Consensus 299 l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~~~~~~~ 349 (407)
+..|+..++.+..++.. +-..-...+..++.++..++.++......++
T Consensus 17 Ie~Lkreie~lk~ele~---l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q 64 (120)
T 3i00_A 17 IERLYREISGLKAQLEN---MKTESQRVVLQLKGHVSELEADLAEQQHLRQ 64 (120)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555444443 2223334455677888888877776654433
No 437
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=32.98 E-value=19 Score=28.87 Aligned_cols=39 Identities=23% Similarity=0.380 Sum_probs=23.6
Q ss_pred CCcccccccccccCCCceeeecCCCccchhccccccCCCCCCcccccC
Q 015431 94 QPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQQ 141 (407)
Q Consensus 94 ~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~ 141 (407)
.+.|+.|-..+.+. ..+..-+..||..| ..|-.|...+.
T Consensus 3 ~~~C~~C~~~I~~~---~~~~a~~~~~H~~C------F~C~~C~~~L~ 41 (126)
T 2xqn_T 3 KPRCAGCDELIFSN---EYTQAENQNWHLKH------FCCFDCDSILA 41 (126)
T ss_dssp CCBBTTTSSBCCSS---CEEEETTEEECGGG------SBCTTTCCBCT
T ss_pred CCCCccCCCEeCCc---eEEeeCCCCccCCC------CCcCCCCCCCC
Confidence 36778887776531 23334466777777 46667766554
No 438
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=32.94 E-value=19 Score=25.48 Aligned_cols=36 Identities=22% Similarity=0.715 Sum_probs=20.0
Q ss_pred CCcccccccccccCCC-ceeeec---CCCccchhcccccc
Q 015431 94 QPSCPVCLERLDQDTS-GILTTI---CNHSFHCSCISKWT 129 (407)
Q Consensus 94 ~~~C~iCle~~~~~~~-~~~~~~---C~H~F~~~Cl~~w~ 129 (407)
.-.||-|.-.+.-+.. .-++.. |++.||..|+..|.
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~ 45 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWE 45 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcc
Confidence 3567777766654221 012222 66777777776664
No 439
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.74 E-value=44 Score=24.47 Aligned_cols=41 Identities=20% Similarity=0.496 Sum_probs=29.1
Q ss_pred CCCCcccccccccccCCCceeeecCCCccchhccccccCCCCCCcccccC
Q 015431 92 TEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQQ 141 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~ 141 (407)
...+.|+.|-..+.... .+..-+..||..| ..|..|...+.
T Consensus 13 ~~~~~C~~C~~~I~~~~---~v~a~~~~wH~~C------F~C~~C~~~L~ 53 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQ---SLLALDKQWHVSC------FKCQTCSVILT 53 (80)
T ss_dssp SSCSCCTTTCCCCSSSC---CEEETTEEECTTT------CBCSSSCCBCS
T ss_pred CCCCCCcCcCCeeCCCe---EEEECCccccccc------CCcCcCCCCcC
Confidence 46789999999886422 2334577899988 47888877653
No 440
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=32.55 E-value=2.4e+02 Score=24.27 Aligned_cols=71 Identities=18% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHh
Q 015431 296 AQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEEREKMALRAKDDKIQDSEAQLRDLMAYLEA 368 (407)
Q Consensus 296 ~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dLm~~l~~ 368 (407)
.+.+++|+.-+..+-..... .+.+.+..++..++.-+..-.+.+..-....+..+..|+.+...|...++.
T Consensus 11 ~~~l~~Lq~~i~~l~~~~~~--~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~ 81 (174)
T 2p22_A 11 HEMLQNLQTVVNELYREDVD--YVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDV 81 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
No 441
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=32.38 E-value=27 Score=27.59 Aligned_cols=54 Identities=11% Similarity=0.105 Sum_probs=40.9
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+-.|+..|-..|..++|+..+ .+-...+.|.+.++|+.=...+||..|.
T Consensus 40 ~te~dL~~~F~~~G~~v~~v~i~~~~---~rGfaFV~F~~~e~A~~Ai~~lng~~l~ 93 (111)
T 2jvr_A 40 CSWQDLKDLARENSLETTFSSVNTRD---FDGTGALEFPSEEILVEALERLNNIEFR 93 (111)
T ss_dssp CCHHHHHHHHHHHTCCCSEEECSSCS---SSCCEEEEESSHHHHHHHHHHTTTEEET
T ss_pred CCHHHHHHHHHHhCCeeEEEEEEcCC---CCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 35678888888885468888886422 2336788999999999999999998664
No 442
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=32.36 E-value=37 Score=33.68 Aligned_cols=56 Identities=13% Similarity=0.246 Sum_probs=42.6
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..+|..|++.|- .|..++|+.+.. ...+-...+.|.+..+|..-...+||..|.
T Consensus 114 ~te~~L~~~F~~~G-~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~ 170 (437)
T 3pgw_S 114 TTESKLRREFEVYG-PIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKID 170 (437)
T ss_pred CCHHHHHHHHHHcC-CeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEEC
Confidence 35677888887763 588899998422 223557889999999999999999998763
No 443
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=32.19 E-value=2.3e+02 Score=23.97 Aligned_cols=12 Identities=8% Similarity=0.030 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 015431 352 IQDSEAQLRDLM 363 (407)
Q Consensus 352 i~~Leeq~~dLm 363 (407)
+.+|.++++.-|
T Consensus 141 ~eeL~~~~~~~~ 152 (165)
T 1gs9_A 141 LRKLRKRLLRDA 152 (165)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhH
Confidence 344555554433
No 444
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=32.16 E-value=28 Score=25.25 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=19.9
Q ss_pred CCCCcccccccccccCCCceeeecCCCccchhcccc
Q 015431 92 TEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISK 127 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~ 127 (407)
.+...| ||....+++..-+.=-.|..-||..|+.-
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~ 48 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGI 48 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTC
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeecc
Confidence 356678 69876543211122235667788888643
No 445
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=31.97 E-value=1.8e+02 Score=22.57 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015431 294 AIAQKLQKMQAKLDRCVREKKFLDDLNENLLK 325 (407)
Q Consensus 294 ~~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~ 325 (407)
.+.+++..|+..+++....+..+..|-....+
T Consensus 19 kL~~Ki~el~~ei~ke~~~regl~Km~~vY~~ 50 (98)
T 2ke4_A 19 RLQQQLEERSRELQKEVDQREALKKMKDVYEK 50 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34445555555555555555554444444443
No 446
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=31.86 E-value=1.8e+02 Score=22.56 Aligned_cols=16 Identities=25% Similarity=0.275 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 015431 268 QKIYYETLLQEAKEET 283 (407)
Q Consensus 268 qr~~~E~~l~~l~~~~ 283 (407)
.|..+..+|.++..+.
T Consensus 16 RkkkL~~Ki~el~~ei 31 (98)
T 2ke4_A 16 QRKRLQQQLEERSREL 31 (98)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555554444
No 447
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.82 E-value=43 Score=23.62 Aligned_cols=41 Identities=24% Similarity=0.468 Sum_probs=28.5
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhccccccCCCCCCcccccC
Q 015431 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQQ 141 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~ 141 (407)
..+.|+.|-..+..+. ..+..-+..||..| ..|..|...+.
T Consensus 4 ~~~~C~~C~~~I~~~~--~~~~a~~~~~H~~C------F~C~~C~~~L~ 44 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDG--AGVVALDRVFHVGC------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCCSSSCSCCCSSS--CCEECSSSEECTTT------CBCSSSCCBCT
T ss_pred CCCCCccCCCccCCCc--eEEEECCCeEcccC------CcccccCCcCC
Confidence 4578999998776422 23445578899888 46888877653
No 448
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=31.80 E-value=1.8e+02 Score=22.53 Aligned_cols=88 Identities=14% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015431 246 LSSKVEAIVNEYNELLA--AQLENQKIYYETLLQEAKEETEKIISEAVKKAIAQKLQKMQAKLDRCVREKKFLDDLNENL 323 (407)
Q Consensus 246 ~~~k~~~~~~ey~~lL~--~qle~qr~~~E~~l~~l~~~~~~~l~~~~~~~~~~~l~~l~~~l~~~~~e~~~l~eln~~l 323 (407)
+..|+.++..+....+. .+++.+.+-.+.....+..+. .++..+++.+...++++...+.....-....
T Consensus 7 IKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei---------~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ 77 (101)
T 3u1c_A 7 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDI---------VQLEKQLRVTEDSRDQVLEELHKSEDSLLFA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHHHHHHHH
Q 015431 324 LKNQEMWKAKISEIEEREK 342 (407)
Q Consensus 324 ~~~~~~l~~kl~~~~~~~~ 342 (407)
.+........+..+..+..
T Consensus 78 ek~~~~aE~ev~~L~Rriq 96 (101)
T 3u1c_A 78 EENAAKAESEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
No 449
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=31.76 E-value=7.3 Score=33.56 Aligned_cols=35 Identities=29% Similarity=0.527 Sum_probs=29.6
Q ss_pred CCccceeecccCCCcccccccCccccccCCccccc
Q 015431 143 PEKSICFVCQTSENLWMCVICGFVGCGRYKGGHAI 177 (407)
Q Consensus 143 ~~~~~C~~C~~~~~l~~Cl~Cg~~~Cgr~~~~Ha~ 177 (407)
+....|..|+.....|.++.=|.+.|.+|.+.|..
T Consensus 20 p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~ 54 (163)
T 3sub_A 20 ESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRS 54 (163)
T ss_dssp GGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHH
T ss_pred CCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcC
Confidence 45788999999999999999999999888776653
No 450
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=31.57 E-value=1.6e+02 Score=21.93 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 015431 264 QLENQKIYYETLLQEAKEET 283 (407)
Q Consensus 264 qle~qr~~~E~~l~~l~~~~ 283 (407)
.+..|+..+|..+.+++...
T Consensus 5 ~l~~~~~sLE~~l~e~e~~~ 24 (84)
T 1gk4_A 5 ALKGTNESLERQMREMEENF 24 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777766655
No 451
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.42 E-value=47 Score=23.47 Aligned_cols=43 Identities=14% Similarity=0.383 Sum_probs=29.0
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhccccccCCCCCCcccccC
Q 015431 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQQ 141 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~ 141 (407)
..+.|+.|-..+........+..-+..||..| ..|..|...+.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~C------F~C~~C~~~L~ 46 (72)
T 1x4l_A 4 GSSGCAGCTNPISGLGGTKYISFEERQWHNDC------FNCKKCSLSLV 46 (72)
T ss_dssp CSCSBTTTTBCCCCSSSCSCEECSSCEECTTT------CBCSSSCCBCT
T ss_pred CCCCCcCCCccccCCCCcceEEECCcccCccc------CEeccCCCcCC
Confidence 46889999998873001123444678899988 47888887654
No 452
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=31.37 E-value=27 Score=26.64 Aligned_cols=23 Identities=30% Similarity=0.837 Sum_probs=15.0
Q ss_pred cceeecccCCC---cccccccCccccc
Q 015431 146 SICFVCQTSEN---LWMCVICGFVGCG 169 (407)
Q Consensus 146 ~~C~~C~~~~~---l~~Cl~Cg~~~Cg 169 (407)
..|..|..... .+.|- ||.+.|+
T Consensus 26 ~rC~~C~kkvgl~~~f~Cr-Cg~~FC~ 51 (85)
T 1wff_A 26 KHCFLCGKKTGLATSFECR-CGNNFCA 51 (85)
T ss_dssp CBCSSSCCBCSSSSCEECT-TCCEECT
T ss_pred ccchhhCCeecccCCeEcC-CCCEecc
Confidence 45555554433 35684 9999997
No 453
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.28 E-value=33 Score=24.24 Aligned_cols=41 Identities=20% Similarity=0.364 Sum_probs=28.9
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhccccccCCCCCCcccccC
Q 015431 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQQ 141 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~ 141 (407)
..+.|+.|...+.... ..+..-+..||..| ..|-.|...+.
T Consensus 4 ~~~~C~~C~~~I~~~~--~~~~a~~~~~H~~C------F~C~~C~~~L~ 44 (72)
T 1x4k_A 4 GSSGCQECKKTIMPGT--RKMEYKGSSWHETC------FICHRCQQPIG 44 (72)
T ss_dssp CCCCBSSSCCCCCSSS--CEEEETTEEEETTT------TCCSSSCCCCC
T ss_pred cCCCCccCCCcccCCc--eEEEECcCeecccC------CcccccCCccC
Confidence 3578999999887422 33445677899888 47888877654
No 454
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=31.27 E-value=1.9e+02 Score=22.70 Aligned_cols=15 Identities=13% Similarity=0.014 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHh
Q 015431 352 IQDSEAQLRDLMAYL 366 (407)
Q Consensus 352 i~~Leeq~~dLm~~l 366 (407)
+..|+.++..|...|
T Consensus 67 ~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 67 HSILQFQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444443333
No 455
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=31.23 E-value=26 Score=23.63 Aligned_cols=28 Identities=21% Similarity=0.462 Sum_probs=19.2
Q ss_pred eecCCCccchhccccccCCCCCCccccc
Q 015431 113 TTICNHSFHCSCISKWTDSSCPVCRYCQ 140 (407)
Q Consensus 113 ~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~ 140 (407)
-+.||+.|-.+=+...-...||.|-+.+
T Consensus 6 C~rCg~~fs~~el~~lP~IrCpyCGyri 33 (48)
T 4ayb_P 6 CGKCWKTFTDEQLKVLPGVRCPYCGYKI 33 (48)
T ss_dssp CCCTTTTCCCCCSCCCSSSCCTTTCCSC
T ss_pred eeccCCCccHHHHhhCCCcccCccCcEE
Confidence 3567777776666666667888887654
No 456
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.23 E-value=28 Score=25.37 Aligned_cols=38 Identities=16% Similarity=0.385 Sum_probs=25.6
Q ss_pred CCcccccccccccCCCceeeecCCCccchhccccccCCCCCCcccccC
Q 015431 94 QPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQQ 141 (407)
Q Consensus 94 ~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~ 141 (407)
.+.|+.|...+.. ..+..-+..||..| ..|..|...+.
T Consensus 15 ~~~C~~C~~~I~~----~~~~a~~~~~H~~C------F~C~~C~~~L~ 52 (81)
T 1x6a_A 15 GEFCHGCSLLMTG----PFMVAGEFKYHPEC------FACMSCKVIIE 52 (81)
T ss_dssp SCBCTTTCCBCCS----CCBCCTTCCBCTTS------CBCTTTCCBCC
T ss_pred CCcCccCCCCcCc----eEEEECCceecccc------CCccCCCCccC
Confidence 4678888887763 23444577888888 46777777653
No 457
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=31.08 E-value=51 Score=24.32 Aligned_cols=47 Identities=23% Similarity=0.461 Sum_probs=27.7
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhccccc-------cCCCCCCccccc
Q 015431 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKW-------TDSSCPVCRYCQ 140 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w-------~~~~CP~Cr~~~ 140 (407)
+...| ||....+....-+.=-.|..-||..|+.-- ....||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 45566 998876532211222357778999997432 225677776543
No 458
>1iuj_A Hypothetical protein TT1380; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.60A {Thermus thermophilus} SCOP: d.58.4.5
Probab=31.06 E-value=83 Score=23.62 Aligned_cols=34 Identities=15% Similarity=0.287 Sum_probs=27.6
Q ss_pred eeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcC
Q 015431 19 EMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFN 52 (407)
Q Consensus 19 ~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~ 52 (407)
...+.|....|+.|+++..|+|.++-+.|...-.
T Consensus 37 ~~~l~~~~~~~~~~~~~~~W~s~~a~~a~~~s~~ 70 (106)
T 1iuj_A 37 RNLVLRPKNPGDPYVVMTLWESEEAFRAWTESPA 70 (106)
T ss_dssp EEEEEEESSTTSCEEEEEEESCHHHHHHHHTSHH
T ss_pred EEEEEecCCCCCeEEEEEEECCHHHHHHHhcCHH
Confidence 4678886667899999999999999887766544
No 459
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=30.64 E-value=25 Score=31.79 Aligned_cols=51 Identities=24% Similarity=0.275 Sum_probs=41.2
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..|- .|..++|++ ++-...+.|.+..+|......+||..+.
T Consensus 34 ~te~~l~~~F~~~G-~i~~v~i~~-----~kg~afV~f~~~~~A~~A~~~l~g~~i~ 84 (261)
T 3sde_A 34 ITEEDFKRLFERYG-EPSEVFINR-----DRGFGFIRLESRTLAEIAKAELDGTILK 84 (261)
T ss_dssp CCHHHHHHHTGGGC-CCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCHHHHHHHHHhcC-CEEEEEEeC-----CCcEEEEEECCHHHHHHHHHHcCCcEEC
Confidence 46678888888774 488899987 2347889999999999999999998764
No 460
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=30.44 E-value=52 Score=26.93 Aligned_cols=51 Identities=22% Similarity=0.406 Sum_probs=37.9
Q ss_pred CChhHHhHhhHHHHH----------hhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQ----------HILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~----------~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..|-. .|.++++.+ ++-...+.|.+.++|.... .+||..|.
T Consensus 16 ~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-----~~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 16 ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp CCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-----TTTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred cCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-----CCCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 467889999998843 444555554 2446788999999999999 89998753
No 461
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.97 E-value=32 Score=27.18 Aligned_cols=55 Identities=4% Similarity=-0.034 Sum_probs=37.7
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCC-CCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDG-MDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~-~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|+..|-. |..+.+|..+. ...+-...+.|.+.++|..-.. .||..|.
T Consensus 37 ~te~~l~~~F~~~G~-v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~ 92 (124)
T 1wel_A 37 AENKHVIDFFKKLDI-VEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMG 92 (124)
T ss_dssp CCHHHHHHHSCSSCB-CTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCST
T ss_pred CCHHHHHHHHHhcCC-ccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeEC
Confidence 356778888877643 44444444332 2346678999999999998888 8887654
No 462
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=29.79 E-value=28 Score=25.96 Aligned_cols=14 Identities=29% Similarity=0.714 Sum_probs=11.2
Q ss_pred cCCCccchhccccc
Q 015431 115 ICNHSFHCSCISKW 128 (407)
Q Consensus 115 ~C~H~F~~~Cl~~w 128 (407)
.|...||..|+.+-
T Consensus 46 ~C~~~yH~~Cl~Pp 59 (77)
T 3shb_A 46 ECDMAFHIYCLDPP 59 (77)
T ss_dssp TTCCEEETTTSSSC
T ss_pred CCCCccCcccCCCc
Confidence 67788999998753
No 463
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.77 E-value=29 Score=25.35 Aligned_cols=39 Identities=18% Similarity=0.498 Sum_probs=27.1
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhccccccCCCCCCcccccC
Q 015431 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQQ 141 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~ 141 (407)
..+.|+.|...+.+ ..+..-+..||..| ..|..|...+.
T Consensus 14 ~~~~C~~C~~~I~~----~~~~a~~~~~H~~C------F~C~~C~~~L~ 52 (81)
T 2dlo_A 14 TLEKCATCSQPILD----RILRAMGKAYHPGC------FTCVVCHRGLD 52 (81)
T ss_dssp SCCBCTTTCCBCCS----CCEEETTEEECTTT------CBCSSSCCBCT
T ss_pred CCCccccCCCeecc----eeEEECCccccHHh------cCcccCCCccC
Confidence 45788889887763 23445567888888 46888877654
No 464
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=29.65 E-value=2.5e+02 Score=23.59 Aligned_cols=28 Identities=11% Similarity=-0.009 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015431 297 QKLQKMQAKLDRCVREKKFLDDLNENLL 324 (407)
Q Consensus 297 ~~l~~l~~~l~~~~~e~~~l~eln~~l~ 324 (407)
..+..|+-.+..++..+..+++-|+.|+
T Consensus 103 DEl~aLqlq~n~lE~kl~kLq~EN~~LV 130 (152)
T 3a7p_A 103 AALISGTIENNVLQQKLSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555554
No 465
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=29.58 E-value=41 Score=28.85 Aligned_cols=42 Identities=19% Similarity=0.507 Sum_probs=30.1
Q ss_pred CCCCCcccccccccccCCCceeeecCCCccchhccccccCCCCCCcccccC
Q 015431 91 STEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQQ 141 (407)
Q Consensus 91 ~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~ 141 (407)
....+.|+.|-..+.. ..++..-+..||..| ..|-.|...+.
T Consensus 57 ~~~~~~C~~C~~~I~~---~~~~~a~~~~wH~~C------F~C~~C~~~L~ 98 (182)
T 2jtn_A 57 TPEIPMCAGCDQHILD---RFILKALDRHWHSKC------LKCSDCHVPLA 98 (182)
T ss_dssp CCSCCBCBTSSSBCCC---SEEEEETTEEECSST------TSCTTTCCCCS
T ss_pred CCCCCcCccCCCCccC---ceeEEecCCeEcccc------CccCCCCCccC
Confidence 3467999999998774 123444577899888 47888877664
No 466
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=29.57 E-value=2.8e+02 Score=24.15 Aligned_cols=12 Identities=17% Similarity=0.440 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH
Q 015431 256 EYNELLAAQLEN 267 (407)
Q Consensus 256 ey~~lL~~qle~ 267 (407)
.|...+.+||++
T Consensus 6 ~YK~~~q~ql~~ 17 (190)
T 4emc_A 6 VYKNSVKQQIDS 17 (190)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 455555555554
No 467
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=29.57 E-value=16 Score=30.33 Aligned_cols=54 Identities=11% Similarity=0.061 Sum_probs=39.6
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..|..+|- |..++|+++.....+-...+.|.+.++|+.-. ..|+..|.
T Consensus 58 ~te~dL~~~F~~~G--i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~ 111 (139)
T 2hgn_A 58 ATENDIYNFFSPLN--PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQ 111 (139)
T ss_dssp CCHHHHHHHHCSCC--CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSS
T ss_pred CCHHHHHHHHHhcC--CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEEC
Confidence 35678888888876 56999998533223446788999999998888 66776553
No 468
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=29.54 E-value=2.2e+02 Score=22.93 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHhhhHH
Q 015431 334 ISEIEEREKMALRAKDDK 351 (407)
Q Consensus 334 l~~~~~~~~~~~~~~~~~ 351 (407)
...+..+.+..+..++.+
T Consensus 73 y~~l~k~Y~~~~keLd~~ 90 (119)
T 3etw_A 73 YQELASKYEDALKKLEAE 90 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 469
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=29.51 E-value=13 Score=31.90 Aligned_cols=34 Identities=21% Similarity=0.474 Sum_probs=20.7
Q ss_pred CCCCcccccccccccCCCceeeecCCCccchhccc
Q 015431 92 TEQPSCPVCLERLDQDTSGILTTICNHSFHCSCIS 126 (407)
Q Consensus 92 ~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~ 126 (407)
.+...| +|....+++..-+.=-.|...||..|+.
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~ 39 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVG 39 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHT
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcC
Confidence 456778 9987765322112223677789999974
No 470
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=29.45 E-value=41 Score=27.80 Aligned_cols=52 Identities=21% Similarity=0.330 Sum_probs=39.3
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++.+ +..++++. ....++-...+.|.+.++|..-...+||..|.
T Consensus 111 ~t~~~l~~~F~~----~g~v~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 162 (175)
T 1fje_B 111 ITEDELKEVFED----ALEIRLVS-QDGKSKGIAYIEFKSEADAEKNLEEKQGAEID 162 (175)
T ss_dssp CCHHHHHHHCTT----CSEEEEEC-SSSSCCSEEEEECSSHHHHHHHHHHHTEEEET
T ss_pred CCHHHHHHHHHh----cCeEEEec-CCCCCceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 355677777776 45678883 33345667899999999999999999998764
No 471
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=28.96 E-value=10 Score=35.31 Aligned_cols=36 Identities=25% Similarity=0.595 Sum_probs=31.1
Q ss_pred CCCccceeecccCCCcccccccCccccccCCccccc
Q 015431 142 QPEKSICFVCQTSENLWMCVICGFVGCGRYKGGHAI 177 (407)
Q Consensus 142 ~~~~~~C~~C~~~~~l~~Cl~Cg~~~Cgr~~~~Ha~ 177 (407)
.+.+..|..|+.....|.....|.+.|.+|.+.|..
T Consensus 39 ~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~ 74 (301)
T 2b0o_E 39 RPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRE 74 (301)
T ss_dssp STTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHH
T ss_pred CCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHh
Confidence 467789999999989999999999999988777753
No 472
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=28.92 E-value=1.1e+02 Score=20.55 Aligned_cols=6 Identities=50% Similarity=0.767 Sum_probs=2.3
Q ss_pred HHHHHH
Q 015431 351 KIQDSE 356 (407)
Q Consensus 351 ~i~~Le 356 (407)
+|.+||
T Consensus 39 RIDdLE 44 (48)
T 3ci9_A 39 RIDDLE 44 (48)
T ss_dssp HHHTTC
T ss_pred HHHHHH
Confidence 333343
No 473
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.86 E-value=42 Score=24.03 Aligned_cols=41 Identities=15% Similarity=0.357 Sum_probs=28.6
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhccccccCCCCCCcccccC
Q 015431 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQQ 141 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~ 141 (407)
..+.|+.|...+.... .++..-+..||..| ..|-.|...+.
T Consensus 10 ~~~~C~~C~~~I~~~~--~~~~a~~~~~H~~C------F~C~~C~~~L~ 50 (77)
T 1g47_A 10 ASATCERCKGGFAPAE--KIVNSNGELYHEQC------FVCAQCFQQFP 50 (77)
T ss_dssp CCCBCSSSCCBCCSTT--TCEEETTEEECTTT------CCCTTTCCCCG
T ss_pred CCCCchhcCCccCCCc--eEEEeCccEecccc------CeECCCCCCCC
Confidence 5689999999886322 23344577899888 46778877654
No 474
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=28.86 E-value=28 Score=27.47 Aligned_cols=31 Identities=16% Similarity=0.605 Sum_probs=18.9
Q ss_pred cccccccccccCCCceeeecCCCccchhcccc
Q 015431 96 SCPVCLERLDQDTSGILTTICNHSFHCSCISK 127 (407)
Q Consensus 96 ~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~ 127 (407)
.|.||...-++ ..-+.--.|...||..|+.+
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~p 86 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQP 86 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSS
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCC
Confidence 46666655332 11223347888999999875
No 475
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=28.68 E-value=2e+02 Score=22.13 Aligned_cols=88 Identities=16% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015431 246 LSSKVEAIVNEYNELLA--AQLENQKIYYETLLQEAKEETEKIISEAVKKAIAQKLQKMQAKLDRCVREKKFLDDLNENL 323 (407)
Q Consensus 246 ~~~k~~~~~~ey~~lL~--~qle~qr~~~E~~l~~l~~~~~~~l~~~~~~~~~~~l~~l~~~l~~~~~e~~~l~eln~~l 323 (407)
+..|+.++..+....+. .+++.+..-.+.....+..+. .++..+++.++..++++...+..+..-....
T Consensus 7 iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei---------~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ 77 (101)
T 3u59_A 7 IKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQ---------QGLQKKLKGTEDEVEKYSESVKEAQEKLEQA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHHHHHHHH
Q 015431 324 LKNQEMWKAKISEIEEREK 342 (407)
Q Consensus 324 ~~~~~~l~~kl~~~~~~~~ 342 (407)
.+........+..+..++.
T Consensus 78 ek~~~~AE~evasLnRriq 96 (101)
T 3u59_A 78 EKKATDAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
No 476
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.61 E-value=42 Score=24.36 Aligned_cols=40 Identities=18% Similarity=0.474 Sum_probs=26.7
Q ss_pred CCcccccccccccCCCceeeecCCCccchhccccccCCCCCCcccccC
Q 015431 94 QPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQQ 141 (407)
Q Consensus 94 ~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~ 141 (407)
.+.|+.|...+.... ..+..-+..||..| ..|-.|...+.
T Consensus 15 ~~~C~~C~~~I~~~~--~~~~a~~~~~H~~C------F~C~~C~~~L~ 54 (82)
T 1x63_A 15 SPKCKGCFKAIVAGD--QNVEYKGTVWHKDC------FTCSNCKQVIG 54 (82)
T ss_dssp SCBCSSSCCBCCSSS--CEEECSSCEEETTT------CCCSSSCCCCT
T ss_pred CCcCccCCcccccCc--eEEEECcccccccc------CchhhCCCccC
Confidence 478888888876422 23444577888888 46777777654
No 477
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=28.37 E-value=2.8e+02 Score=23.61 Aligned_cols=54 Identities=11% Similarity=0.135 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhH-HHH-hhhccccCCCCcEE
Q 015431 329 MWKAKISEIEEREKMALRAKDDKIQDSEAQLRDLMAYLEAE-KTL-QQLSISNEIKDGTV 386 (407)
Q Consensus 329 ~l~~kl~~~~~~~~~~~~~~~~~i~~Leeq~~dLm~~l~~~-~~~-~~~~~~~ei~~G~v 386 (407)
....++..+.++.....+....+|..|+..|.. |.++. .++ .+ ..+-++--|+|
T Consensus 38 ~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~---y~e~~r~elf~k-~Kt~~l~~G~v 93 (171)
T 2p2u_A 38 QMNEAIDAAKARASQKSAPLLARRKELEDGVAT---FATLNKTEMFKD-RKSLDLGFGTI 93 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHTHHHHCC----CCBCSSCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHhcCC-CeEEEeCCEEE
Confidence 333445555555555556666666666665544 33333 333 21 12456667776
No 478
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=28.25 E-value=1.9e+02 Score=21.77 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015431 298 KLQKMQAKLDRCVREKKFLDDLNENLL 324 (407)
Q Consensus 298 ~l~~l~~~l~~~~~e~~~l~eln~~l~ 324 (407)
...+|...++.+.+++..+++.|+.|.
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555554444
No 479
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=28.21 E-value=4.5e+02 Score=27.38 Aligned_cols=90 Identities=13% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015431 246 LSSKVEAIVNEYNELLAAQLENQKIYYETLLQEAKEETEKIISEAVKKAIAQKLQKMQAKLDRCVREKKFLDDLNENLLK 325 (407)
Q Consensus 246 ~~~k~~~~~~ey~~lL~~qle~qr~~~E~~l~~l~~~~~~~l~~~~~~~~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~ 325 (407)
+...+-.+..++..-+...++.+-..|+..+.+-....-..+..++.+.+.++-. .-..+.++++.++.+.....+
T Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~ 676 (695)
T 2j69_A 601 LVKHLPQVAHEQSQVVYNAVKECFDSYEREVSKRINDDIVSRKSELDNLVKQKQT----REINRESEFNRLKNLQEDVIA 676 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHhhHHHHHH
Q ss_pred hHHHHHHHHHHHHH
Q 015431 326 NQEMWKAKISEIEE 339 (407)
Q Consensus 326 ~~~~l~~kl~~~~~ 339 (407)
..+..+.++..+..
T Consensus 677 ~~~~~~~~~~~~~~ 690 (695)
T 2j69_A 677 QLQKIEAAYSNLLA 690 (695)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
No 480
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=28.04 E-value=3.4e+02 Score=24.58 Aligned_cols=11 Identities=27% Similarity=0.525 Sum_probs=4.5
Q ss_pred eeEEeccCCcc
Q 015431 194 QRVWDYAGDNY 204 (407)
Q Consensus 194 ~~v~cy~cd~~ 204 (407)
.+|.-|.-|..
T Consensus 27 FkVLSyLSDdl 37 (242)
T 3uux_B 27 FRMLTYISDDL 37 (242)
T ss_dssp HHHHTCCCTTG
T ss_pred hhhHHhcCHHH
Confidence 34444444333
No 481
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=28.01 E-value=43 Score=24.44 Aligned_cols=47 Identities=23% Similarity=0.511 Sum_probs=27.8
Q ss_pred CCCcccccccccccCCCceeeecCCCccchhccccc-----------cCCCCCCcccccC
Q 015431 93 EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKW-----------TDSSCPVCRYCQQ 141 (407)
Q Consensus 93 e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w-----------~~~~CP~Cr~~~~ 141 (407)
....| ||....+. ..-+.=-.|..-||..|+.-. ....||.|+....
T Consensus 15 ~~~~C-~C~~~~~~-~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 15 NALYC-ICRQPHNN-RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp TCCCS-TTCCCCCS-SCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCCEE-ECCCccCC-CCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 34567 89877652 111112357788999997532 2367888876543
No 482
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=27.79 E-value=76 Score=23.44 Aligned_cols=35 Identities=11% Similarity=0.225 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 015431 302 MQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISE 336 (407)
Q Consensus 302 l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~ 336 (407)
+..+...+..++...+.+.+.+++--+.|+-++++
T Consensus 17 ~k~kv~~LQ~eLdtsE~VQrDFVkLSQsLQvqLE~ 51 (79)
T 1tu3_F 17 EKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLER 51 (79)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433344444443
No 483
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=27.64 E-value=39 Score=29.28 Aligned_cols=50 Identities=26% Similarity=0.293 Sum_probs=38.1
Q ss_pred ChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcC
Q 015431 2 TYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFN 52 (407)
Q Consensus 2 ~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~ 52 (407)
|..|+-.|.+.|- .|..+||++......+-...+.|.+.++|.......+
T Consensus 122 t~~~L~~~F~~~G-~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~ 171 (193)
T 2voo_A 122 TLDDIKEWLEDKG-QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG 171 (193)
T ss_dssp CHHHHHHHHTTSC-CEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT
T ss_pred CHHHHHHHHhcCC-CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC
Confidence 5567777777764 4889999985443356688999999999999887654
No 484
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=27.62 E-value=36 Score=24.71 Aligned_cols=13 Identities=31% Similarity=0.897 Sum_probs=10.9
Q ss_pred cCCCccchhcccc
Q 015431 115 ICNHSFHCSCISK 127 (407)
Q Consensus 115 ~C~H~F~~~Cl~~ 127 (407)
.|...||..|+.+
T Consensus 38 ~C~~~yH~~Cl~P 50 (70)
T 3asl_A 38 ECDMAFHIYCLDP 50 (70)
T ss_dssp TTCCEEEGGGSSS
T ss_pred CCCCceecccCCC
Confidence 5778999999875
No 485
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=27.60 E-value=13 Score=29.20 Aligned_cols=40 Identities=35% Similarity=0.542 Sum_probs=26.3
Q ss_pred CCcccccccccccCCCceeeecCCCccchhccccccC-CCCCCcccccC
Q 015431 94 QPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTD-SSCPVCRYCQQ 141 (407)
Q Consensus 94 ~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~-~~CP~Cr~~~~ 141 (407)
...||+|...++.. =++.+|..|-..... ..||-|...+.
T Consensus 32 ~~~CP~Cq~eL~~~--------g~~~hC~~C~~~f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQD--------NGHARCRSCGEFIEMKALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEEE--------TTEEEETTTCCEEEEEEECTTTCSBCE
T ss_pred cccCccCCCcceec--------CCEEECccccchhhccccCcchhhHHH
Confidence 38999999887631 123347777655533 67888887654
No 486
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=27.48 E-value=2.2e+02 Score=24.12 Aligned_cols=32 Identities=13% Similarity=0.201 Sum_probs=22.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhHhHHHHhh
Q 015431 343 MALRAKDDKIQDSEAQLRDLMAYLEAEKTLQQ 374 (407)
Q Consensus 343 ~~~~~~~~~i~~Leeq~~dLm~~l~~~~~~~~ 374 (407)
..++.|.+.+++|..|.-.+..-++.-+....
T Consensus 19 ~rI~~K~~~LqeL~~Q~vafknLv~RN~~~e~ 50 (155)
T 2aze_A 19 ERIKQKQSQLQELILQQIAFKNLVQRNRHAEQ 50 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666778888888888777766666654
No 487
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=27.17 E-value=1.9e+02 Score=21.38 Aligned_cols=7 Identities=43% Similarity=0.653 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 015431 318 DLNENLL 324 (407)
Q Consensus 318 eln~~l~ 324 (407)
+||..+.
T Consensus 32 eLn~~v~ 38 (78)
T 3efg_A 32 ELSEALA 38 (78)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444433
No 488
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=27.09 E-value=22 Score=29.37 Aligned_cols=12 Identities=25% Similarity=0.578 Sum_probs=9.4
Q ss_pred CCcccccccCcc
Q 015431 155 ENLWMCVICGFV 166 (407)
Q Consensus 155 ~~l~~Cl~Cg~~ 166 (407)
.++|+|..|++-
T Consensus 42 g~l~vCPeC~hE 53 (138)
T 2akl_A 42 GALLVCPECAHE 53 (138)
T ss_dssp SSSEEETTTTEE
T ss_pred CCeEECCccccc
Confidence 478999999854
No 489
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.04 E-value=42 Score=24.27 Aligned_cols=37 Identities=27% Similarity=0.535 Sum_probs=24.4
Q ss_pred CCcccccccccccCCCceeeecCCCccchhccccccCCCCCCccccc
Q 015431 94 QPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQ 140 (407)
Q Consensus 94 ~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~ 140 (407)
.+.|+.|-..+.. ..+..-+..||..| ..|-.|...+
T Consensus 15 ~~~C~~C~~~I~~----~~v~a~~~~~H~~C------F~C~~C~~~L 51 (80)
T 2cuq_A 15 APRCARCSKTLTQ----GGVTYRDQPWHREC------LVCTGCQTPL 51 (80)
T ss_dssp SCCCTTTCCCCCS----CCEESSSSEECTTT------CBCSSSCCBC
T ss_pred CCcCCCCCCEecC----cEEEECCchhhhhh------CCcccCCCcC
Confidence 4678888877764 12345567788777 4677777655
No 490
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=26.92 E-value=2.9e+02 Score=23.32 Aligned_cols=15 Identities=13% Similarity=0.328 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 015431 297 QKLQKMQAKLDRCVR 311 (407)
Q Consensus 297 ~~l~~l~~~l~~~~~ 311 (407)
.+++.|..+++.+..
T Consensus 77 eqIk~L~~kLKEAE~ 91 (155)
T 2efr_A 77 EEIKVLSDKLKEAET 91 (155)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444443333
No 491
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.90 E-value=53 Score=24.29 Aligned_cols=51 Identities=8% Similarity=0.175 Sum_probs=35.8
Q ss_pred CChhHHhHhhHHHHHhhheeEEEeeCCCCCeeEEEEeccChhhHhhHhhhcCCcccc
Q 015431 1 MTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFN 57 (407)
Q Consensus 1 ~~~~d~~~f~~~~~~~i~~~r~ir~~~~~~~y~vll~f~~~~~a~~f~~~~~g~~f~ 57 (407)
+|..|+..++..|-. |.++ +. +...++ ...+.|.+.++|..-.. +||..|.
T Consensus 20 ~t~~~l~~~F~~~G~-v~~v--~~-~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~ 70 (94)
T 2e5g_A 20 VDSAQLSEYFLAFGP-VASV--VM-DKDKGV-FAIVEMGDVGAREAVLS-QSQHSLG 70 (94)
T ss_dssp CCHHHHHHHGGGTSC-EEEE--EE-CSSSCC-EEEEEESSHHHHHHHHT-CSCCEET
T ss_pred CCHHHHHHHHHhcCC-eEEE--EE-cCCCCc-EEEEEECCHHHHHHHHh-cCCeEEC
Confidence 356778888877643 4444 44 322234 78899999999999999 9998764
No 492
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=26.86 E-value=44 Score=25.85 Aligned_cols=80 Identities=19% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015431 262 AAQLENQKIYYETLLQEAKEETEKIISEAVKKAIAQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKISEIEERE 341 (407)
Q Consensus 262 ~~qle~qr~~~E~~l~~l~~~~~~~l~~~~~~~~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~~~~~~~ 341 (407)
.+-++.+|.||+-.+ ..+..-.......+....--|+.++..+..+++.++.-|+.|.+-++.-++-++...+..
T Consensus 13 ~sVie~ErIY~e~v~-----~~~~~tg~~~~~~~~~Etl~LQrQv~qLt~~lQ~~~~Ene~Lke~qKtqkal~ESKL~~~ 87 (95)
T 3n7n_E 13 KAKLDSERIYNEYVQ-----SQYEFASLDKPKKVVDETLFLQRQIAQLNKQLQLSFQENEKLLSVQKNQKALYQSKLSSK 87 (95)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHC------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHh-----hcCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 015431 342 KMALR 346 (407)
Q Consensus 342 ~~~~~ 346 (407)
++.++
T Consensus 88 kk~ie 92 (95)
T 3n7n_E 88 DAFID 92 (95)
T ss_dssp -----
T ss_pred HHHHH
No 493
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=26.86 E-value=33 Score=27.95 Aligned_cols=38 Identities=18% Similarity=0.399 Sum_probs=0.0
Q ss_pred CCCCCCcccccccccccCCCceeeecCCCccchhcccc
Q 015431 90 SSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISK 127 (407)
Q Consensus 90 ~~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~ 127 (407)
+..+...|.+|...|......-.=-.||+.||..|...
T Consensus 65 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 65 EDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred cCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCC
No 494
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.84 E-value=35 Score=24.89 Aligned_cols=37 Identities=22% Similarity=0.538 Sum_probs=0.0
Q ss_pred CcccccccccccCCCceeeecCCCccchhccccccCCCCCCcccccC
Q 015431 95 PSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQQ 141 (407)
Q Consensus 95 ~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~ 141 (407)
+.|+.|...+.. ..+..-+..||..| ..|-.|...+.
T Consensus 16 ~~C~~C~~~I~~----~~v~a~~~~wH~~C------F~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIEG----EVVSALGKTYHPDC------FVCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCCS----CCEEETTEEECTTT------SSCSSSCCCCC
T ss_pred CcCccccCEecc----ceEEECCceeCccC------CccccCCCCCC
No 495
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=26.83 E-value=3e+02 Score=23.58 Aligned_cols=70 Identities=9% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 015431 266 ENQKIYYETLLQEAKEETEKIISEAVKKAIAQKLQKMQAKLDRCVR----EKKFLDDLNENLLKNQEMWKAKISEIEERE 341 (407)
Q Consensus 266 e~qr~~~E~~l~~l~~~~~~~l~~~~~~~~~~~l~~l~~~l~~~~~----e~~~l~eln~~l~~~~~~l~~kl~~~~~~~ 341 (407)
++|++-+....++...+. ..+.+++...+.++..+.. +...++++.+.+.+.+..+...--+...++
T Consensus 70 ~EQq~ql~~I~~e~r~~~---------~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em 140 (175)
T 3lay_A 70 TEQQATAQKIYDDYYTQT---------SALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAM 140 (175)
T ss_dssp HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 015431 342 KMA 344 (407)
Q Consensus 342 ~~~ 344 (407)
++.
T Consensus 141 ~Ke 143 (175)
T 3lay_A 141 AQA 143 (175)
T ss_dssp HHT
T ss_pred HHh
No 496
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=26.74 E-value=39 Score=30.12 Aligned_cols=36 Identities=31% Similarity=0.680 Sum_probs=0.0
Q ss_pred cccC-CCCCCcccccCCCCccceeecccCCCcccccccCccccccCCc
Q 015431 127 KWTD-SSCPVCRYCQQQPEKSICFVCQTSENLWMCVICGFVGCGRYKG 173 (407)
Q Consensus 127 ~w~~-~~CP~Cr~~~~~~~~~~C~~C~~~~~l~~Cl~Cg~~~Cgr~~~ 173 (407)
.|.. ..|+.|...|. ....-.-|-.||.+.|+.|..
T Consensus 157 ~W~~~~~C~~C~~~F~-----------~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 157 NWADGRVCHRCRVEFT-----------FTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CCCCCSBCTTTCCBCC-----------SSSCCEECTTTCCEECSTTSC
T ss_pred cCCCCCccCCCCCccC-----------CcccccccCCcCCEEChHHhC
No 497
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=26.73 E-value=3.2e+02 Score=23.82 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 015431 256 EYNELLAAQLENQKIYYETLLQEAKEETEKIISEAVKKAIAQKLQKMQAKLDRCVREKKFLDDLNENLLKNQEMWKAKIS 335 (407)
Q Consensus 256 ey~~lL~~qle~qr~~~E~~l~~l~~~~~~~l~~~~~~~~~~~l~~l~~~l~~~~~e~~~l~eln~~l~~~~~~l~~kl~ 335 (407)
.|...+.+||++ =..++..|..+. ..++..++ ...++++.|+.++..++++..-.+..+.....+.+....-++
T Consensus 6 ~YK~~~q~ql~~----ad~LV~~L~~En-~~L~~ql~-~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e 79 (190)
T 4emc_A 6 VYKNSVKQQIDS----ADLLVANLVNEN-FVLSEKLD-TKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYE 79 (190)
T ss_dssp ------------------CHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHH
Q ss_pred HHH
Q 015431 336 EIE 338 (407)
Q Consensus 336 ~~~ 338 (407)
.+.
T Consensus 80 ~LT 82 (190)
T 4emc_A 80 YLC 82 (190)
T ss_dssp HHH
T ss_pred Hcc
No 498
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.59 E-value=89 Score=23.19 Aligned_cols=53 Identities=25% Similarity=0.399 Sum_probs=0.0
Q ss_pred ccCCCCCcCCCCCCCCCCCCcccccccccccCCCceeeecCCCccchhccccccCCCCCCcccccC
Q 015431 76 GYTGSLEHVQPAPASSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQQ 141 (407)
Q Consensus 76 ~~~~~~~~~~~~~~~~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~ 141 (407)
+++++...+.... ..+.|+.|-..+.. .-.+..-+..||..| ..|-.|...+.
T Consensus 1 ~s~~s~~~~~~~~----~~~~C~~C~~~I~~---~~~v~a~~~~~H~~C------F~C~~C~~~L~ 53 (91)
T 2d8y_A 1 GSSGSSGMKFQAP----ARETCVECQKTVYP---MERLLANQQVFHISC------FRCSYCNNKLS 53 (91)
T ss_dssp CCCCCCSSCSCSS----SSCBCTTTCCBCCT---TSEEECSSSEEETTT------CBCTTTCCBCC
T ss_pred CCCCCCCCccCCC----CCCcCccCCCccCC---ceeEEECCCEECCCC------CeeCCCCCCCC
No 499
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=26.59 E-value=2.4e+02 Score=22.40 Aligned_cols=84 Identities=21% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 015431 276 LQEAKEETEKIISEAVKKAIAQKLQKMQAKLDRCVREKKF-LDDLNENLLKNQEMWKAKISEIEEREKMALRAKDDKIQD 354 (407)
Q Consensus 276 l~~l~~~~~~~l~~~~~~~~~~~l~~l~~~l~~~~~e~~~-l~eln~~l~~~~~~l~~kl~~~~~~~~~~~~~~~~~i~~ 354 (407)
|++|+++. ...+.+|-...++|....+.... =.++|+.-. .+-+..+...+.+|.+
T Consensus 24 ieeLq~Ei---------~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl--------------~~R~~~Vs~lq~Kiae 80 (113)
T 4fi5_A 24 MEELQREI---------NAHEGQLVIARQKVRDAEKQYEKDPDELNKRTL--------------TDREGVAVSIQAKIDE 80 (113)
T ss_dssp HHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH--------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH--------------HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhHhHHHHhhhccccCCCCcE
Q 015431 355 SEAQLRDLMAYLEAEKTLQQLSISNEIKDGT 385 (407)
Q Consensus 355 Leeq~~dLm~~l~~~~~~~~~~~~~ei~~G~ 385 (407)
|+.|+.|... ++....+..+..++..|.
T Consensus 81 LKrqLAd~va---~~k~~~k~~DPTG~EpDD 108 (113)
T 4fi5_A 81 LKRQLADRIA---TGKNLGKEQDPTGVEPGD 108 (113)
T ss_dssp HHHHHHHHHH---C-----------------
T ss_pred HHHHHHHHHH---hcccccCCCCCCCCCCcc
No 500
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=26.39 E-value=12 Score=27.61 Aligned_cols=68 Identities=19% Similarity=0.238 Sum_probs=0.0
Q ss_pred CCCCCCCCcccccccccccCCCceeeecCCCccchhccccccCCCCCCcccccC------CCCccceeecccCCCccccc
Q 015431 88 PASSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQQ------QPEKSICFVCQTSENLWMCV 161 (407)
Q Consensus 88 ~~~~~e~~~C~iCle~~~~~~~~~~~~~C~H~F~~~Cl~~w~~~~CP~Cr~~~~------~~~~~~C~~C~~~~~l~~Cl 161 (407)
++.....+.|+.|...+.. +..+..-+..||..| ..|-.|...+. ....+.|..|-...--..|.
T Consensus 1 m~~~~~~~~C~~C~~~I~~---~~~~~a~~~~~H~~C------F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~ 71 (81)
T 1a7i_A 1 MPNWGGGNKCGACGRTVYH---AEEVQCDGRSFHRCC------FLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGY 71 (81)
T ss_dssp -------CBCSSSCCBCSS---TTEEEETTEEEESSS------EECSSSCCEECSSCCEEETTEEECSHHHHHHCC----
T ss_pred CCCCCCCCcCcCcCccccC---ceeEEeCCccccccc------CccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCccc
Q ss_pred ccC
Q 015431 162 ICG 164 (407)
Q Consensus 162 ~Cg 164 (407)
.||
T Consensus 72 gcg 74 (81)
T 1a7i_A 72 GYG 74 (81)
T ss_dssp ---
T ss_pred ccC
Done!