BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015432
         (407 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
           Trna(Leucine) Complex
 pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
           Trna(Leucine) Complex
          Length = 967

 Score = 31.6 bits (70), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 68/159 (42%), Gaps = 24/159 (15%)

Query: 192 THIVMNIPAVDPANNVWYDREKNYSMILQGI-VDPEMRFRDIIAGWPGSLTDALVLRNSG 250
           T +VM++PA  P ++V  +  K  + IL+   +DP  R  + I     +    + L   G
Sbjct: 319 TGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDP--RIVENI-----TYISLIKLEGYG 371

Query: 251 FFKLTEEGKRLDGKSLQLSEGIELREYIIGDTGFPLLPWLLTPYQGK------------- 297
            F   EE  +L  KS +  E +E     I    +    + + PY+GK             
Sbjct: 372 DFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQEVKEAIAKEM 431

Query: 298 ---GLSDIEAEYNKRHSATRMVAQMALARLKDVWRIIHG 333
              G+++I  E+ +++  +R   +  +  + D W I +G
Sbjct: 432 LEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYG 470


>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
           Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
           Domain Orientation
          Length = 810

 Score = 31.6 bits (70), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 68/159 (42%), Gaps = 24/159 (15%)

Query: 192 THIVMNIPAVDPANNVWYDREKNYSMILQGI-VDPEMRFRDIIAGWPGSLTDALVLRNSG 250
           T +VM++PA  P ++V  +  K  + IL+   +DP +   +I      +    + L   G
Sbjct: 319 TGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRI-VENI------TYISLIKLEGYG 371

Query: 251 FFKLTEEGKRLDGKSLQLSEGIELREYIIGDTGFPLLPWLLTPYQGK------------- 297
            F   EE  +L  KS +  E +E     I    +    + + PY+GK             
Sbjct: 372 DFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQEVKEAIAKEM 431

Query: 298 ---GLSDIEAEYNKRHSATRMVAQMALARLKDVWRIIHG 333
              G+++I  E+ +++  +R   +  +  + D W I +G
Sbjct: 432 LEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYG 470


>pdb|4A5W|A Chain A, Crystal Structure Of C5b6
          Length = 1580

 Score = 29.6 bits (65), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 79   RKTFDYICSLVKEDLA-ARQSNFSFSNGKPLSPNDMVAIALRRLSSGE 125
            RK FD IC LVK D A  +  NF   N  P      +AI+   LS G+
Sbjct: 1057 RKAFD-ICPLVKIDTALIKADNFLLENTLPAQSTFTLAISAYALSLGD 1103


>pdb|3CU7|A Chain A, Human Complement Component 5
 pdb|3CU7|B Chain B, Human Complement Component 5
 pdb|3KLS|A Chain A, Structure Of Complement C5 In Complex With Ssl7
 pdb|3KLS|B Chain B, Structure Of Complement C5 In Complex With Ssl7
 pdb|3KM9|A Chain A, Structure Of Complement C5 In Complex With The C-Terminal
            Beta-Grasp Domain Of Ssl7
 pdb|3KM9|B Chain B, Structure Of Complement C5 In Complex With The C-Terminal
            Beta-Grasp Domain Of Ssl7
 pdb|4E0S|A Chain A, Crystal Structure Of C5b-6
          Length = 1676

 Score = 29.6 bits (65), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 79   RKTFDYICSLVKEDLA-ARQSNFSFSNGKPLSPNDMVAIALRRLSSGE 125
            RK FD IC LVK D A  +  NF   N  P      +AI+   LS G+
Sbjct: 1153 RKAFD-ICPLVKIDTALIKADNFLLENTLPAQSTFTLAISAYALSLGD 1199


>pdb|3PRX|A Chain A, Structure Of Complement C5 In Complex With Cvf And Ssl7
 pdb|3PRX|C Chain C, Structure Of Complement C5 In Complex With Cvf And Ssl7
 pdb|3PVM|A Chain A, Structure Of Complement C5 In Complex With Cvf
 pdb|3PVM|C Chain C, Structure Of Complement C5 In Complex With Cvf
          Length = 1676

 Score = 29.6 bits (65), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 79   RKTFDYICSLVKEDLA-ARQSNFSFSNGKPLSPNDMVAIALRRLSSGE 125
            RK FD IC LVK D A  +  NF   N  P      +AI+   LS G+
Sbjct: 1153 RKAFD-ICPLVKIDTALIKADNFLLENTLPAQSTFTLAISAYALSLGD 1199


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,863,766
Number of Sequences: 62578
Number of extensions: 477333
Number of successful extensions: 877
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 875
Number of HSP's gapped (non-prelim): 6
length of query: 407
length of database: 14,973,337
effective HSP length: 101
effective length of query: 306
effective length of database: 8,652,959
effective search space: 2647805454
effective search space used: 2647805454
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)