Query 015432
Match_columns 407
No_of_seqs 244 out of 1765
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 12:31:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015432.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015432hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tc3_C Protein (TC3 transposas 94.1 0.0043 1.5E-07 41.1 -1.7 41 106-147 4-44 (51)
2 2w7n_A TRFB transcriptional re 93.0 0.013 4.6E-07 45.8 -0.7 60 76-153 4-63 (101)
3 1wy3_A Villin; structural prot 92.8 0.05 1.7E-06 33.7 1.8 22 67-88 2-23 (35)
4 2glo_A Brinker CG9653-PA; prot 92.6 0.0094 3.2E-07 41.7 -2.0 43 105-148 3-49 (59)
5 1und_A Advillin, P92; actin bi 92.2 0.065 2.2E-06 33.7 1.8 22 66-87 3-24 (37)
6 2jn6_A Protein CGL2762, transp 90.4 0.028 9.5E-07 43.4 -1.5 43 106-148 4-47 (97)
7 1jko_C HIN recombinase, DNA-in 90.2 0.025 8.5E-07 37.6 -1.7 26 121-146 18-43 (52)
8 1jhg_A Trp operon repressor; c 90.2 0.028 9.6E-07 43.9 -1.6 30 123-153 56-86 (101)
9 1tty_A Sigma-A, RNA polymerase 90.0 0.043 1.5E-06 41.5 -0.7 48 107-154 18-68 (87)
10 2p7v_B Sigma-70, RNA polymeras 90.0 0.033 1.1E-06 39.9 -1.3 48 107-154 5-55 (68)
11 3t72_q RNA polymerase sigma fa 89.6 0.11 3.9E-06 40.3 1.4 49 107-155 19-70 (99)
12 1ku3_A Sigma factor SIGA; heli 89.3 0.053 1.8E-06 39.4 -0.7 48 106-153 9-59 (73)
13 3hug_A RNA polymerase sigma fa 89.0 0.057 2E-06 41.2 -0.7 48 108-156 38-85 (92)
14 2o8x_A Probable RNA polymerase 88.9 0.052 1.8E-06 38.7 -1.0 48 107-155 15-62 (70)
15 1qzp_A Dematin; villin headpie 86.6 0.3 1E-05 35.1 1.9 23 66-88 34-56 (68)
16 1j1v_A Chromosomal replication 86.4 0.037 1.3E-06 42.8 -3.2 50 105-154 27-77 (94)
17 1fse_A GERE; helix-turn-helix 85.5 0.15 5.2E-06 36.6 -0.1 46 106-153 10-55 (74)
18 2elh_A CG11849-PA, LD40883P; s 85.4 0.067 2.3E-06 40.4 -2.2 44 106-150 21-64 (87)
19 1yu8_X Villin; alpha helix, 3- 84.4 0.34 1.2E-05 34.6 1.3 23 66-88 33-55 (67)
20 1u78_A TC3 transposase, transp 84.4 0.077 2.6E-06 43.4 -2.5 43 105-148 4-46 (141)
21 2jpc_A SSRB; DNA binding prote 84.0 0.15 5.1E-06 35.3 -0.7 33 121-153 10-42 (61)
22 2k6m_S Supervillin; SVHP, HP, 83.6 0.34 1.2E-05 34.7 1.0 22 66-87 33-54 (67)
23 1k78_A Paired box protein PAX5 83.3 0.15 5E-06 42.4 -1.2 44 106-150 31-74 (149)
24 2jt1_A PEFI protein; solution 83.0 0.53 1.8E-05 34.7 1.9 46 77-146 1-46 (77)
25 1je8_A Nitrate/nitrite respons 82.7 0.17 5.7E-06 37.7 -1.0 45 107-153 21-65 (82)
26 1pdn_C Protein (PRD paired); p 82.7 0.16 5.3E-06 40.5 -1.2 43 106-149 16-58 (128)
27 1rp3_A RNA polymerase sigma fa 82.6 0.21 7.3E-06 44.3 -0.5 51 106-157 186-236 (239)
28 3hot_A Transposable element ma 82.3 3.4 0.00011 38.9 7.9 171 68-246 29-219 (345)
29 1or7_A Sigma-24, RNA polymeras 82.1 0.22 7.5E-06 42.9 -0.6 51 108-159 141-191 (194)
30 1s7o_A Hypothetical UPF0122 pr 81.5 0.19 6.5E-06 40.0 -1.1 48 108-156 23-70 (113)
31 3c57_A Two component transcrip 81.2 0.21 7.2E-06 38.3 -0.9 46 107-154 27-72 (95)
32 3pvv_A Chromosomal replication 81.0 0.086 2.9E-06 41.2 -3.3 49 106-154 32-80 (101)
33 1iuf_A Centromere ABP1 protein 80.9 0.3 1E-05 40.6 -0.1 49 104-152 8-64 (144)
34 2jrt_A Uncharacterized protein 80.9 0.17 5.9E-06 39.0 -1.5 45 104-148 29-73 (95)
35 1xsv_A Hypothetical UPF0122 pr 80.9 0.24 8.3E-06 39.4 -0.7 48 108-156 26-73 (113)
36 1ujs_A Actin-binding LIM prote 79.5 0.47 1.6E-05 35.8 0.5 27 66-92 48-74 (88)
37 2rnj_A Response regulator prot 79.4 0.24 8.1E-06 37.5 -1.2 44 108-153 30-73 (91)
38 2x48_A CAG38821; archeal virus 79.2 0.33 1.1E-05 32.7 -0.3 26 121-146 28-53 (55)
39 2lfw_A PHYR sigma-like domain; 79.1 0.5 1.7E-05 39.5 0.7 51 106-157 92-142 (157)
40 1hlv_A CENP-B, major centromer 78.9 0.25 8.4E-06 40.0 -1.3 49 105-153 5-54 (131)
41 1l0o_C Sigma factor; bergerat 78.8 0.4 1.4E-05 42.5 0.0 44 107-151 198-241 (243)
42 1x3u_A Transcriptional regulat 77.9 0.23 7.8E-06 36.2 -1.6 43 108-152 17-59 (79)
43 2q1z_A RPOE, ECF SIGE; ECF sig 77.3 0.45 1.6E-05 40.5 -0.1 47 108-155 136-182 (184)
44 2rn7_A IS629 ORFA; helix, all 77.0 0.12 4E-06 40.6 -3.7 42 106-147 5-53 (108)
45 3mzy_A RNA polymerase sigma-H 75.9 0.47 1.6E-05 39.2 -0.4 47 108-156 110-156 (164)
46 1p4w_A RCSB; solution structur 75.5 0.44 1.5E-05 36.9 -0.7 46 106-153 33-78 (99)
47 2d1h_A ST1889, 109AA long hypo 74.7 2.2 7.4E-05 32.5 3.3 49 71-149 13-61 (109)
48 1uxc_A FRUR (1-57), fructose r 74.6 0.63 2.2E-05 33.0 0.0 21 126-146 2-22 (65)
49 1zyb_A Transcription regulator 72.9 1.1 3.8E-05 39.6 1.3 82 66-149 122-211 (232)
50 2k27_A Paired box protein PAX- 72.1 0.32 1.1E-05 40.8 -2.4 41 106-147 24-64 (159)
51 3frw_A Putative Trp repressor 71.6 0.87 3E-05 35.6 0.2 26 120-145 54-79 (107)
52 3ulq_B Transcriptional regulat 71.4 0.45 1.5E-05 36.1 -1.5 45 106-152 28-72 (90)
53 1u78_A TC3 transposase, transp 70.0 1.4 4.9E-05 35.5 1.2 77 67-147 24-102 (141)
54 3r0a_A Putative transcriptiona 69.5 3.4 0.00012 32.9 3.3 27 125-151 43-69 (123)
55 2l8n_A Transcriptional repress 68.8 0.74 2.5E-05 32.9 -0.7 21 125-145 10-30 (67)
56 4ham_A LMO2241 protein; struct 64.6 3.4 0.00012 33.5 2.4 45 81-145 15-59 (134)
57 1zs4_A Regulatory protein CII; 64.3 4.3 0.00015 30.2 2.7 23 126-148 26-48 (83)
58 3kor_A Possible Trp repressor; 62.4 1.4 4.7E-05 35.3 -0.4 29 117-145 68-96 (119)
59 3uj3_X DNA-invertase; helix-tu 61.6 1.7 5.8E-05 37.6 0.0 36 112-147 146-181 (193)
60 3ech_A MEXR, multidrug resista 60.6 2.3 8E-05 34.2 0.7 28 123-150 50-77 (142)
61 2l1p_A DNA-binding protein SAT 60.2 1.7 5.7E-05 32.2 -0.2 22 124-145 32-53 (83)
62 2l0k_A Stage III sporulation p 59.9 1.6 5.6E-05 33.3 -0.3 23 125-147 21-43 (93)
63 2htj_A P fimbrial regulatory p 58.6 3.1 0.00011 30.3 1.1 25 124-148 14-38 (81)
64 4dyq_A Gene 1 protein; GP1, oc 58.4 2.1 7.1E-05 35.2 0.0 31 117-147 21-52 (140)
65 2heo_A Z-DNA binding protein 1 57.4 2.9 9.8E-05 29.6 0.6 25 124-148 25-49 (67)
66 2pij_A Prophage PFL 6 CRO; tra 57.1 2.4 8.3E-05 29.4 0.2 23 122-145 12-34 (67)
67 3jw4_A Transcriptional regulat 57.1 12 0.00041 30.0 4.6 27 124-150 57-83 (148)
68 3kp7_A Transcriptional regulat 56.0 11 0.00037 30.5 4.1 27 123-149 50-76 (151)
69 3fmy_A HTH-type transcriptiona 55.8 2.7 9.3E-05 30.0 0.3 25 121-145 21-45 (73)
70 1l9z_H Sigma factor SIGA; heli 55.7 1.9 6.4E-05 42.7 -0.8 47 107-153 375-424 (438)
71 1zx4_A P1 PARB, plasmid partit 55.6 1.8 6.3E-05 37.7 -0.8 28 120-147 20-47 (192)
72 3bdd_A Regulatory protein MARR 55.6 9.8 0.00033 30.1 3.7 25 124-148 45-69 (142)
73 1o5l_A Transcriptional regulat 55.4 2.6 8.9E-05 36.5 0.2 44 107-150 140-190 (213)
74 1sfx_A Conserved hypothetical 55.3 11 0.00038 28.2 3.9 27 124-150 34-60 (109)
75 1oyi_A Double-stranded RNA-bin 54.8 1.1 3.8E-05 33.4 -2.0 26 123-148 29-54 (82)
76 2a6h_F RNA polymerase sigma fa 54.5 1.9 6.4E-05 42.5 -1.1 46 108-153 361-409 (423)
77 2hin_A GP39, repressor protein 54.3 2.9 0.0001 30.1 0.2 21 126-146 12-32 (71)
78 1xwr_A Regulatory protein CII; 54.2 5.9 0.0002 30.4 2.0 25 125-149 24-48 (97)
79 2lkp_A Transcriptional regulat 54.0 1.9 6.5E-05 33.9 -0.9 27 124-150 45-71 (119)
80 3nrv_A Putative transcriptiona 53.4 7.8 0.00027 31.2 2.8 27 124-150 54-80 (148)
81 3cuo_A Uncharacterized HTH-typ 53.3 1.9 6.7E-05 32.3 -0.9 27 124-150 38-64 (99)
82 2cw1_A SN4M; lambda CRO fold, 53.2 1.5 5.1E-05 31.1 -1.5 22 124-145 13-34 (65)
83 3g3z_A NMB1585, transcriptiona 53.0 12 0.0004 30.0 3.8 26 124-149 45-70 (145)
84 3k0l_A Repressor protein; heli 51.8 17 0.00059 29.7 4.8 26 124-149 60-85 (162)
85 2fa5_A Transcriptional regulat 51.7 12 0.00042 30.4 3.8 27 124-150 63-89 (162)
86 1r1u_A CZRA, repressor protein 51.7 2.8 9.7E-05 32.3 -0.2 28 123-150 38-65 (106)
87 1rzs_A Antirepressor, regulato 51.5 1.9 6.7E-05 29.8 -1.1 22 124-145 10-31 (61)
88 2frh_A SARA, staphylococcal ac 51.3 8.9 0.0003 30.3 2.8 28 123-150 52-79 (127)
89 3jth_A Transcription activator 50.5 2.5 8.5E-05 32.0 -0.7 27 124-150 36-62 (98)
90 2gxg_A 146AA long hypothetical 50.4 3.2 0.00011 33.4 -0.1 40 108-149 35-75 (146)
91 3bd1_A CRO protein; transcript 50.2 3.4 0.00012 29.8 0.0 23 123-146 11-33 (79)
92 3la7_A Global nitrogen regulat 50.2 1.6 5.6E-05 38.8 -2.1 83 66-150 123-219 (243)
93 3plo_X DNA-invertase; resolvas 49.8 3.4 0.00012 35.7 0.0 38 114-151 148-185 (193)
94 3boq_A Transcriptional regulat 48.8 16 0.00055 29.6 4.1 28 123-150 61-88 (160)
95 2xi8_A Putative transcription 48.8 3.3 0.00011 28.2 -0.2 24 122-145 12-35 (66)
96 3bpv_A Transcriptional regulat 48.7 15 0.00051 28.9 3.8 27 123-149 42-68 (138)
97 3f3x_A Transcriptional regulat 48.6 11 0.00038 30.0 3.0 25 126-150 52-76 (144)
98 2rdp_A Putative transcriptiona 48.2 15 0.00053 29.3 3.9 28 123-150 55-82 (150)
99 1neq_A DNA-binding protein NER 48.2 3.7 0.00013 29.7 -0.1 24 122-145 20-43 (74)
100 3kz3_A Repressor protein CI; f 48.2 3.5 0.00012 29.8 -0.2 23 123-145 24-46 (80)
101 4hbl_A Transcriptional regulat 48.1 13 0.00045 30.0 3.4 27 123-149 54-80 (149)
102 3dn7_A Cyclic nucleotide bindi 47.8 4.1 0.00014 34.4 0.2 42 108-149 149-193 (194)
103 2fbi_A Probable transcriptiona 47.7 13 0.00045 29.3 3.3 27 124-150 50-76 (142)
104 2o20_A Catabolite control prot 47.6 3.9 0.00013 38.0 0.0 23 125-147 6-28 (332)
105 3ctp_A Periplasmic binding pro 47.5 3.9 0.00013 38.0 0.0 22 126-147 4-25 (330)
106 2fbh_A Transcriptional regulat 47.5 3.1 0.0001 33.5 -0.7 29 122-150 50-78 (146)
107 1xn7_A Hypothetical protein YH 47.2 5.5 0.00019 29.2 0.8 23 124-146 16-38 (78)
108 2qvo_A Uncharacterized protein 46.8 1.2 4E-05 33.8 -3.1 26 125-150 31-56 (95)
109 2a6c_A Helix-turn-helix motif; 46.8 3.9 0.00013 29.9 -0.1 24 123-146 30-53 (83)
110 3bil_A Probable LACI-family tr 46.5 4.2 0.00014 38.3 0.0 22 126-147 10-31 (348)
111 1zug_A Phage 434 CRO protein; 46.4 3.8 0.00013 28.4 -0.2 23 123-145 15-37 (71)
112 1qpz_A PURA, protein (purine n 46.4 4.1 0.00014 38.0 -0.1 21 126-146 2-22 (340)
113 1qgp_A Protein (double strande 46.2 5.5 0.00019 29.0 0.6 25 124-148 31-55 (77)
114 3h5o_A Transcriptional regulat 46.0 4.3 0.00015 37.9 0.0 23 125-147 5-27 (339)
115 1r69_A Repressor protein CI; g 46.0 3.9 0.00013 28.1 -0.2 24 122-145 12-35 (69)
116 1jgs_A Multiple antibiotic res 45.9 18 0.00061 28.4 3.8 27 124-150 48-74 (138)
117 1jye_A Lactose operon represso 45.7 4.4 0.00015 38.1 0.0 22 126-147 5-26 (349)
118 3omt_A Uncharacterized protein 45.7 4 0.00014 28.7 -0.2 42 122-176 19-60 (73)
119 3dbi_A Sugar-binding transcrip 45.7 4.4 0.00015 37.8 0.0 22 126-147 5-26 (338)
120 1y0u_A Arsenical resistance op 45.6 5.6 0.00019 29.9 0.6 27 122-148 41-67 (96)
121 2bv6_A MGRA, HTH-type transcri 45.6 15 0.00052 29.1 3.4 27 124-150 51-77 (142)
122 3fx3_A Cyclic nucleotide-bindi 45.5 2.3 7.8E-05 37.4 -1.9 65 106-172 150-225 (237)
123 1qbj_A Protein (double-strande 45.5 6.7 0.00023 28.9 1.0 24 124-147 27-50 (81)
124 1q1h_A TFE, transcription fact 45.5 7.8 0.00027 29.8 1.5 27 124-150 33-59 (110)
125 3oop_A LIN2960 protein; protei 45.5 15 0.0005 29.3 3.2 28 123-150 50-77 (143)
126 3o9x_A Uncharacterized HTH-typ 45.4 4.9 0.00017 32.2 0.3 26 120-145 80-105 (133)
127 1l3l_A Transcriptional activat 45.4 4.8 0.00016 35.8 0.2 46 106-153 172-217 (234)
128 1ku9_A Hypothetical protein MJ 45.4 5.1 0.00018 32.1 0.4 25 123-147 40-64 (152)
129 3clo_A Transcriptional regulat 45.4 2.9 9.8E-05 37.9 -1.3 46 106-153 196-241 (258)
130 3szt_A QCSR, quorum-sensing co 45.2 6.4 0.00022 35.1 1.0 46 105-152 173-218 (237)
131 3bja_A Transcriptional regulat 45.2 7 0.00024 30.9 1.2 27 124-150 47-73 (139)
132 2a61_A Transcriptional regulat 45.2 14 0.00049 29.3 3.1 27 124-150 47-73 (145)
133 3dv8_A Transcriptional regulat 45.1 1.9 6.5E-05 37.4 -2.5 64 108-172 146-217 (220)
134 3n0r_A Response regulator; sig 45.0 4.4 0.00015 37.4 -0.1 73 108-182 112-185 (286)
135 3jvd_A Transcriptional regulat 44.9 4.5 0.00016 37.7 0.0 23 125-147 7-29 (333)
136 2hsg_A Glucose-resistance amyl 44.8 4 0.00014 37.9 -0.4 22 126-147 4-25 (332)
137 4fx0_A Probable transcriptiona 44.7 17 0.00058 29.6 3.5 26 124-149 52-77 (148)
138 3mky_B Protein SOPB; partition 44.7 1.9 6.5E-05 37.4 -2.4 41 106-146 22-64 (189)
139 3ryp_A Catabolite gene activat 44.6 2.3 7.7E-05 36.5 -2.1 42 108-149 138-192 (210)
140 3iyd_F RNA polymerase sigma fa 44.5 3.5 0.00012 42.6 -0.9 49 106-154 549-600 (613)
141 3e3m_A Transcriptional regulat 44.4 4.7 0.00016 37.9 0.0 22 126-147 14-35 (355)
142 1pdn_C Protein (PRD paired); p 44.3 11 0.00036 29.3 2.1 80 66-147 34-126 (128)
143 3h5t_A Transcriptional regulat 43.9 5 0.00017 37.9 0.1 22 125-146 10-31 (366)
144 4ghj_A Probable transcriptiona 43.7 3.6 0.00012 31.8 -0.8 24 122-145 47-70 (101)
145 2ek5_A Predicted transcription 43.5 11 0.00038 30.3 2.1 22 126-147 30-51 (129)
146 3kjx_A Transcriptional regulat 43.5 4.5 0.00015 37.8 -0.3 22 125-146 11-32 (344)
147 4aik_A Transcriptional regulat 43.1 3 0.0001 34.4 -1.4 25 124-148 46-70 (151)
148 2q0o_A Probable transcriptiona 43.0 4.1 0.00014 36.3 -0.6 46 106-153 174-219 (236)
149 3eus_A DNA-binding protein; st 43.0 3.9 0.00013 30.1 -0.6 23 123-145 26-48 (86)
150 2r1j_L Repressor protein C2; p 43.0 4.8 0.00017 27.5 -0.1 23 123-145 17-39 (68)
151 3e6c_C CPRK, cyclic nucleotide 42.9 1.6 5.5E-05 39.0 -3.4 66 107-173 146-226 (250)
152 3qq6_A HTH-type transcriptiona 42.7 3.1 0.00011 30.1 -1.3 25 121-145 20-44 (78)
153 3bj6_A Transcriptional regulat 42.4 5.3 0.00018 32.3 0.0 27 123-149 53-79 (152)
154 1tbx_A ORF F-93, hypothetical 42.2 3.9 0.00013 30.8 -0.8 27 124-150 22-52 (99)
155 2qww_A Transcriptional regulat 42.1 17 0.0006 29.2 3.2 27 123-149 54-80 (154)
156 3e97_A Transcriptional regulat 42.0 1.1 3.9E-05 39.3 -4.5 58 109-166 146-218 (231)
157 1z91_A Organic hydroperoxide r 42.0 17 0.00059 28.9 3.2 26 124-149 54-79 (147)
158 2oz6_A Virulence factor regula 41.8 2.7 9.2E-05 35.9 -2.0 42 108-149 135-189 (207)
159 2pg4_A Uncharacterized protein 41.7 7.7 0.00026 29.0 0.9 28 124-151 30-58 (95)
160 2ewt_A BLDD, putative DNA-bind 41.6 18 0.0006 24.8 2.8 24 123-146 20-45 (71)
161 3b7h_A Prophage LP1 protein 11 41.4 5.5 0.00019 28.1 -0.0 23 123-145 19-41 (78)
162 3b02_A Transcriptional regulat 41.0 3.5 0.00012 35.0 -1.3 65 107-172 109-187 (195)
163 2b5a_A C.BCLI; helix-turn-heli 41.0 5.7 0.00019 28.0 -0.0 23 123-145 22-44 (77)
164 3deu_A Transcriptional regulat 41.0 17 0.0006 30.0 3.1 28 122-149 66-93 (166)
165 2wiu_B HTH-type transcriptiona 41.0 6.4 0.00022 28.6 0.3 24 123-146 24-47 (88)
166 2ovg_A Phage lambda CRO; trans 40.8 5.6 0.00019 28.1 -0.1 21 125-145 14-34 (66)
167 2zcw_A TTHA1359, transcription 40.8 3.3 0.00011 35.4 -1.6 64 108-172 117-194 (202)
168 2di3_A Bacterial regulatory pr 40.7 21 0.00071 31.6 3.7 51 77-147 1-51 (239)
169 3iwz_A CAP-like, catabolite ac 40.6 3.4 0.00012 35.9 -1.6 42 108-149 158-212 (230)
170 1u2w_A CADC repressor, cadmium 40.6 3.1 0.00011 33.0 -1.6 28 123-150 55-82 (122)
171 3d0s_A Transcriptional regulat 40.4 2.3 7.9E-05 37.1 -2.7 83 66-150 107-203 (227)
172 1r1t_A Transcriptional repress 40.4 4.3 0.00015 32.3 -0.9 27 124-150 59-85 (122)
173 3tgn_A ADC operon repressor AD 40.2 9 0.00031 30.6 1.1 27 124-150 51-77 (146)
174 2b0l_A GTP-sensing transcripti 40.2 7.6 0.00026 29.9 0.6 23 126-148 45-67 (102)
175 2k02_A Ferrous iron transport 40.2 6.2 0.00021 29.6 0.1 23 124-146 16-38 (87)
176 2fbk_A Transcriptional regulat 40.1 35 0.0012 28.4 5.0 26 125-150 87-112 (181)
177 2ao9_A Phage protein; structur 40.0 8.6 0.00029 32.2 1.0 35 124-158 48-85 (155)
178 1y7y_A C.AHDI; helix-turn-heli 40.0 6 0.00021 27.6 -0.0 23 123-145 25-47 (74)
179 2oa4_A SIR5; structure, struct 39.9 2.5 8.4E-05 32.8 -2.2 37 112-148 38-74 (101)
180 2kko_A Possible transcriptiona 39.5 7.7 0.00026 29.9 0.5 29 123-151 37-65 (108)
181 3bro_A Transcriptional regulat 39.2 8.8 0.0003 30.4 0.9 27 124-150 50-76 (141)
182 2k9q_A Uncharacterized protein 39.2 6 0.0002 28.1 -0.1 23 123-145 14-36 (77)
183 3cdh_A Transcriptional regulat 39.1 11 0.00037 30.6 1.4 28 123-150 56-83 (155)
184 3bs3_A Putative DNA-binding pr 38.9 5.8 0.0002 27.9 -0.2 24 122-145 21-44 (76)
185 2kpj_A SOS-response transcript 38.6 6.1 0.00021 29.4 -0.2 23 123-145 21-43 (94)
186 4b8x_A SCO5413, possible MARR- 38.4 20 0.00068 29.0 3.0 24 125-148 52-75 (147)
187 1adr_A P22 C2 repressor; trans 38.4 6.3 0.00022 27.6 -0.1 23 123-145 17-39 (76)
188 2w48_A Sorbitol operon regulat 38.3 4.8 0.00016 37.7 -1.0 30 119-148 16-45 (315)
189 2fmy_A COOA, carbon monoxide o 38.0 2.1 7.3E-05 37.2 -3.4 43 108-150 137-193 (220)
190 2cob_A LCOR protein; MLR2, KIA 37.9 2.1 7E-05 30.8 -2.7 39 108-146 13-52 (70)
191 3f6w_A XRE-family like protein 37.7 6.5 0.00022 28.3 -0.1 23 123-145 26-48 (83)
192 2fu4_A Ferric uptake regulatio 37.6 11 0.00037 27.3 1.1 26 124-149 33-63 (83)
193 3s8q_A R-M controller protein; 37.6 5 0.00017 28.9 -0.8 23 123-145 23-45 (82)
194 2ppx_A AGR_C_3184P, uncharacte 37.4 5.1 0.00018 30.3 -0.8 23 123-145 42-64 (99)
195 2oqg_A Possible transcriptiona 37.4 11 0.00037 28.9 1.1 28 123-150 33-60 (114)
196 3trb_A Virulence-associated pr 37.2 6.6 0.00023 30.3 -0.2 25 122-146 25-49 (104)
197 3e6m_A MARR family transcripti 37.2 20 0.00069 29.2 2.9 27 124-150 67-93 (161)
198 1v4r_A Transcriptional repress 37.2 8 0.00027 29.4 0.3 20 126-145 37-56 (102)
199 3hsr_A HTH-type transcriptiona 37.0 8.5 0.00029 30.8 0.5 28 123-150 49-76 (140)
200 3u2r_A Regulatory protein MARR 36.9 8.1 0.00028 32.0 0.3 28 123-150 61-88 (168)
201 1gdt_A GD resolvase, protein ( 36.7 5.1 0.00017 34.2 -1.0 27 120-146 154-180 (183)
202 2ict_A Antitoxin HIGA; helix-t 36.7 7.8 0.00027 28.7 0.2 24 123-146 20-43 (94)
203 1ub9_A Hypothetical protein PH 36.5 9.5 0.00032 28.3 0.6 28 124-151 30-57 (100)
204 1lj9_A Transcriptional regulat 36.2 8.4 0.00029 30.7 0.3 25 124-148 43-67 (144)
205 1ft9_A Carbon monoxide oxidati 36.2 3.2 0.00011 36.1 -2.5 43 108-150 133-189 (222)
206 2fxa_A Protease production reg 36.0 27 0.00091 30.2 3.6 26 123-148 61-86 (207)
207 2p5t_A Putative transcriptiona 36.0 7.6 0.00026 32.2 0.0 25 121-145 11-35 (158)
208 2x4h_A Hypothetical protein SS 36.0 11 0.00038 30.0 1.0 27 124-150 31-57 (139)
209 1on2_A Transcriptional regulat 36.0 11 0.00037 30.2 1.0 26 124-149 22-47 (142)
210 3s2w_A Transcriptional regulat 35.8 8.9 0.0003 31.4 0.4 28 123-150 63-90 (159)
211 1z4h_A TORI, TOR inhibition pr 35.7 8.1 0.00028 27.0 0.1 22 126-147 12-33 (66)
212 2dk5_A DNA-directed RNA polyme 35.6 4.3 0.00015 30.7 -1.5 41 108-148 18-60 (91)
213 3ic7_A Putative transcriptiona 35.5 17 0.00057 28.9 2.0 23 126-148 37-59 (126)
214 2pex_A Transcriptional regulat 35.4 7.9 0.00027 31.4 0.0 26 123-148 60-85 (153)
215 3eco_A MEPR; mutlidrug efflux 35.4 8.7 0.0003 30.5 0.3 27 124-150 47-73 (139)
216 3pqk_A Biofilm growth-associat 35.4 12 0.00042 28.2 1.1 27 124-150 36-62 (102)
217 1lmb_3 Protein (lambda repress 35.1 7.7 0.00026 28.5 -0.1 24 123-146 29-52 (92)
218 2ef8_A C.ECOT38IS, putative tr 35.0 8 0.00027 27.7 -0.0 23 123-145 22-44 (84)
219 2o0m_A Transcriptional regulat 34.9 8.1 0.00028 36.6 0.0 38 112-150 23-60 (345)
220 3t76_A VANU, transcriptional r 34.7 7.8 0.00027 28.9 -0.1 41 123-177 36-76 (88)
221 3tqn_A Transcriptional regulat 34.4 11 0.00036 29.5 0.6 24 126-149 35-58 (113)
222 3fm5_A Transcriptional regulat 33.9 4.1 0.00014 33.1 -2.0 27 124-150 54-80 (150)
223 2eby_A Putative HTH-type trans 33.7 8.4 0.00029 29.7 -0.1 25 122-146 22-46 (113)
224 3qp6_A CVIR transcriptional re 33.7 5.3 0.00018 36.4 -1.5 46 106-153 196-241 (265)
225 2nnn_A Probable transcriptiona 33.7 4.7 0.00016 32.0 -1.7 27 124-150 52-78 (140)
226 3cec_A Putative antidote prote 33.6 7.7 0.00026 29.5 -0.3 24 123-146 30-53 (104)
227 2vn2_A DNAD, chromosome replic 33.6 33 0.0011 27.2 3.5 51 74-150 27-77 (128)
228 2nyx_A Probable transcriptiona 33.3 24 0.00082 29.0 2.8 25 124-148 59-83 (168)
229 1mkm_A ICLR transcriptional re 33.3 4 0.00014 36.8 -2.4 27 124-150 23-49 (249)
230 3neu_A LIN1836 protein; struct 32.4 12 0.00041 29.8 0.6 24 126-149 39-62 (125)
231 1r71_A Transcriptional repress 32.4 4 0.00014 35.0 -2.4 40 106-145 34-73 (178)
232 1x57_A Endothelial differentia 32.4 11 0.00038 27.7 0.4 25 122-146 24-48 (91)
233 2g7u_A Transcriptional regulat 32.3 6.1 0.00021 35.7 -1.3 43 108-150 10-55 (257)
234 1s3j_A YUSO protein; structura 32.1 28 0.00097 27.8 3.0 25 124-148 51-75 (155)
235 3kcc_A Catabolite gene activat 32.0 4.3 0.00015 36.4 -2.4 43 108-150 188-243 (260)
236 2pn6_A ST1022, 150AA long hypo 31.9 13 0.00046 30.1 0.9 27 124-150 17-43 (150)
237 2gqq_A Leucine-responsive regu 31.9 24 0.00083 29.2 2.5 24 125-148 28-51 (163)
238 2cfx_A HTH-type transcriptiona 31.8 14 0.00049 29.9 1.0 26 124-149 19-44 (144)
239 2hzt_A Putative HTH-type trans 31.3 8.8 0.0003 29.5 -0.3 28 123-150 26-54 (107)
240 1j9i_A GPNU1 DBD;, terminase s 31.2 8.6 0.00029 26.9 -0.4 22 126-147 4-25 (68)
241 1i1g_A Transcriptional regulat 31.0 15 0.00051 29.4 1.0 27 124-150 18-44 (141)
242 2wte_A CSA3; antiviral protein 31.0 32 0.0011 30.8 3.3 27 124-150 166-192 (244)
243 3f6o_A Probable transcriptiona 31.0 13 0.00043 29.1 0.5 29 123-151 30-58 (118)
244 2cyy_A Putative HTH-type trans 30.6 15 0.00053 29.9 1.0 27 124-150 21-47 (151)
245 3cjn_A Transcriptional regulat 30.5 5.3 0.00018 32.8 -1.9 26 124-149 66-91 (162)
246 2h09_A Transcriptional regulat 30.5 15 0.0005 30.0 0.9 27 124-150 54-80 (155)
247 2cg4_A Regulatory protein ASNC 30.5 16 0.00056 29.7 1.2 27 124-150 22-48 (152)
248 1nr3_A MTH0916, DNA-binding pr 30.3 11 0.00036 29.9 -0.0 25 123-147 4-28 (122)
249 2w25_A Probable transcriptiona 30.3 15 0.0005 29.9 0.9 25 124-148 21-45 (150)
250 2zkz_A Transcriptional repress 30.3 11 0.00037 28.5 0.0 28 124-151 41-68 (99)
251 3kxa_A NGO0477 protein, putati 30.1 9.6 0.00033 31.1 -0.3 26 121-146 78-103 (141)
252 1y6u_A XIS, excisionase from t 29.9 15 0.00051 26.2 0.7 32 106-146 7-38 (70)
253 2l49_A C protein; P2 bacteriop 29.9 11 0.00038 28.1 -0.0 24 122-145 15-38 (99)
254 3m8j_A FOCB protein; all-alpha 29.9 26 0.00088 27.4 2.1 39 111-149 47-85 (111)
255 2p5k_A Arginine repressor; DNA 29.9 13 0.00045 25.1 0.4 22 125-146 20-46 (64)
256 2dbb_A Putative HTH-type trans 29.8 18 0.00061 29.4 1.3 27 124-150 23-49 (151)
257 2eth_A Transcriptional regulat 29.7 5.2 0.00018 32.7 -2.1 27 124-150 58-84 (154)
258 1p6r_A Penicillinase repressor 29.4 4.3 0.00015 29.5 -2.4 26 123-148 22-51 (82)
259 3by6_A Predicted transcription 29.3 14 0.00049 29.4 0.6 23 126-148 37-59 (126)
260 1k78_A Paired box protein PAX5 29.3 22 0.00074 28.7 1.7 80 66-147 49-141 (149)
261 3op9_A PLI0006 protein; struct 29.2 12 0.00042 28.7 0.2 24 123-146 21-44 (114)
262 2r0q_C Putative transposon TN5 29.1 7.3 0.00025 34.0 -1.4 26 121-146 172-197 (209)
263 2hr3_A Probable transcriptiona 28.9 18 0.00062 28.8 1.2 28 123-150 49-76 (147)
264 3f6v_A Possible transcriptiona 28.9 5.3 0.00018 33.1 -2.1 28 124-151 71-98 (151)
265 1b0n_A Protein (SINR protein); 28.7 12 0.0004 28.5 -0.0 24 122-145 12-35 (111)
266 3g5g_A Regulatory protein; tra 28.5 8.9 0.0003 29.1 -0.8 23 123-145 40-62 (99)
267 2gau_A Transcriptional regulat 28.1 11 0.00036 32.8 -0.5 64 108-172 151-228 (232)
268 2p5v_A Transcriptional regulat 27.9 17 0.00058 30.0 0.9 26 125-150 25-50 (162)
269 2auw_A Hypothetical protein NE 27.9 7.9 0.00027 32.9 -1.2 26 120-145 99-124 (170)
270 2jsc_A Transcriptional regulat 27.9 18 0.0006 28.3 0.9 27 124-150 34-60 (118)
271 3mlf_A Transcriptional regulat 27.8 10 0.00036 29.3 -0.5 26 121-146 33-58 (111)
272 2wus_R RODZ, putative uncharac 27.8 11 0.00039 29.4 -0.2 25 122-146 18-42 (112)
273 1fx7_A Iron-dependent represso 27.7 5.3 0.00018 35.5 -2.6 27 124-150 22-50 (230)
274 1rr7_A Middle operon regulator 27.7 15 0.00053 29.5 0.5 28 123-150 91-118 (129)
275 3vk0_A NHTF, transcriptional r 27.1 9.8 0.00034 29.5 -0.8 23 123-145 33-55 (114)
276 2jvl_A TRMBF1; coactivator, he 26.7 13 0.00044 28.6 -0.1 23 123-145 48-70 (107)
277 3ivp_A Putative transposon-rel 26.5 11 0.00039 29.6 -0.5 41 123-176 24-64 (126)
278 2o0y_A Transcriptional regulat 26.1 7.7 0.00026 35.2 -1.8 43 108-150 19-64 (260)
279 1j5y_A Transcriptional regulat 25.4 23 0.00078 30.2 1.2 25 125-149 37-61 (187)
280 2o38_A Hypothetical protein; a 25.1 15 0.00052 29.0 -0.0 23 123-145 52-74 (120)
281 1a04_A Nitrate/nitrite respons 24.9 13 0.00044 31.8 -0.5 37 117-153 162-198 (215)
282 3f52_A CLP gene regulator (CLG 24.6 16 0.00054 28.2 0.0 23 123-145 40-62 (117)
283 3oou_A LIN2118 protein; protei 24.5 23 0.0008 26.9 1.0 25 124-148 21-45 (108)
284 1ic8_A Hepatocyte nuclear fact 24.5 18 0.0006 31.5 0.3 23 123-145 42-64 (194)
285 2v79_A DNA replication protein 24.2 78 0.0027 25.4 4.2 53 72-150 25-77 (135)
286 2ia0_A Putative HTH-type trans 24.1 22 0.00075 29.8 0.9 27 124-150 31-57 (171)
287 1yyv_A Putative transcriptiona 23.1 14 0.00048 29.7 -0.6 28 124-151 48-76 (131)
288 1vz0_A PARB, chromosome partit 23.0 8.1 0.00028 34.5 -2.2 41 106-146 116-156 (230)
289 2f2e_A PA1607; transcription f 22.9 13 0.00045 30.4 -0.8 27 124-150 37-63 (146)
290 1z7u_A Hypothetical protein EF 22.4 28 0.00097 26.7 1.1 28 123-150 34-62 (112)
291 3mn2_A Probable ARAC family tr 22.4 25 0.00086 26.6 0.8 25 124-148 18-42 (108)
292 1loi_A Cyclic 3',5'-AMP specif 22.3 33 0.0011 18.7 1.0 13 44-56 13-25 (26)
293 2e1c_A Putative HTH-type trans 22.2 24 0.00083 29.6 0.7 27 124-150 41-67 (171)
294 1okr_A MECI, methicillin resis 22.2 6.2 0.00021 30.8 -2.9 27 124-150 24-54 (123)
295 3mkl_A HTH-type transcriptiona 22.0 33 0.0011 26.5 1.5 87 51-149 9-97 (120)
296 2g9w_A Conserved hypothetical 21.9 7.5 0.00026 31.4 -2.5 28 123-150 23-54 (138)
297 3df8_A Possible HXLR family tr 21.9 16 0.00053 28.4 -0.5 25 127-151 45-70 (111)
298 3k2z_A LEXA repressor; winged 21.8 29 0.00098 29.7 1.1 22 125-146 25-46 (196)
299 3dkw_A DNR protein; CRP-FNR, H 21.8 32 0.0011 29.4 1.4 43 108-150 151-204 (227)
300 2fd5_A Transcriptional regulat 21.8 22 0.00074 29.1 0.3 23 124-146 27-49 (180)
301 2fsw_A PG_0823 protein; alpha- 21.7 14 0.00048 28.3 -0.8 28 123-150 37-65 (107)
302 2h8r_A Hepatocyte nuclear fact 21.7 9.3 0.00032 33.9 -2.1 26 121-146 41-66 (221)
303 1p4x_A Staphylococcal accessor 21.6 66 0.0023 28.8 3.6 27 125-151 175-201 (250)
304 2obp_A Putative DNA-binding pr 21.4 84 0.0029 23.7 3.6 24 125-148 37-60 (96)
305 2k9s_A Arabinose operon regula 21.3 31 0.0011 26.1 1.1 25 124-148 20-44 (107)
306 3nqo_A MARR-family transcripti 21.2 24 0.00083 29.8 0.5 25 123-147 56-80 (189)
307 3i4p_A Transcriptional regulat 21.0 25 0.00087 29.0 0.6 26 125-150 18-43 (162)
308 3cta_A Riboflavin kinase; stru 21.0 23 0.00079 31.1 0.4 27 124-150 27-53 (230)
309 2k4b_A Transcriptional regulat 20.7 9.2 0.00031 29.3 -2.1 38 111-149 37-78 (99)
310 1al3_A Cys regulon transcripti 20.7 21 0.00071 32.6 0.0 34 121-154 13-46 (324)
311 3mq0_A Transcriptional repress 20.7 29 0.001 31.6 1.0 27 124-150 45-71 (275)
312 3c3w_A Two component transcrip 20.6 15 0.00051 31.8 -1.0 44 107-152 149-192 (225)
313 1ntc_A Protein (nitrogen regul 20.6 31 0.001 25.6 0.9 25 123-147 63-87 (91)
314 3him_A Probable transcriptiona 20.6 23 0.00077 29.5 0.2 24 124-147 36-59 (211)
315 2xrn_A HTH-type transcriptiona 20.3 22 0.00074 31.7 0.0 27 124-150 21-47 (241)
316 3oio_A Transcriptional regulat 20.1 30 0.001 26.4 0.9 25 124-148 23-47 (113)
317 2ia2_A Putative transcriptiona 20.0 28 0.00096 31.4 0.7 28 124-151 36-63 (265)
No 1
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=94.05 E-value=0.0043 Score=41.08 Aligned_cols=41 Identities=10% Similarity=0.030 Sum_probs=31.7
Q ss_pred CCCChhcceeeEEEeccCCCcchhhhcccccccccchhhhHH
Q 015432 106 KPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWR 147 (407)
Q Consensus 106 ~~l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~ 147 (407)
..++.+++..+.+. +..|.++..||..+|||.+||++++.+
T Consensus 4 ~~l~~~~~~~i~~~-~~~g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 4 SALSDTERAQLDVM-KLLNVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCCHHHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 45777666444443 467899999999999999999998754
No 2
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=92.96 E-value=0.013 Score=45.80 Aligned_cols=60 Identities=20% Similarity=0.321 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHHHhhhhhhhhcCCCcCCCCCCCChhcceeeEEEeccCCCcchhhhcccccccccchhhhHHHHHHHH
Q 015432 76 KISRKTFDYICSLVKEDLAARQSNFSFSNGKPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESME 153 (407)
Q Consensus 76 rmsr~tF~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~~al~ 153 (407)
|||.+.|+.+...++ ++ +..+-++=.|+-.|.++.+||..+|||++||++++.+.-+...
T Consensus 4 rmT~~eFe~~~~~l~-----------------~~-~~~~~~A~lyYv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~~ 63 (101)
T 2w7n_A 4 RLTESQFQEAIQGLE-----------------VG-QQTIEIARGVLVDGKPQATFATSLGLTRGAVSQAVHRVWAAFE 63 (101)
T ss_dssp CCCHHHHHHHHTTCC-----------------CC-HHHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHccCC-----------------hH-HHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHh
Confidence 799999998886541 11 1223344456778999999999999999999999988777654
No 3
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=92.77 E-value=0.05 Score=33.72 Aligned_cols=22 Identities=23% Similarity=0.540 Sum_probs=19.2
Q ss_pred ChhHHHhhcCCCHHHHHHHHHH
Q 015432 67 TSKNFESVFKISRKTFDYICSL 88 (407)
Q Consensus 67 ~d~~F~~~frmsr~tF~~L~~~ 88 (407)
+|++|...|+|+|+.|..|=..
T Consensus 2 sd~dF~~vFgmsr~eF~~LP~W 23 (35)
T 1wy3_A 2 SDEDFKAVFGMTRSAFANLPLW 23 (35)
T ss_dssp CHHHHHHHHSSCHHHHHHSCHH
T ss_pred CHHHHHHHHCCCHHHHHHCcHH
Confidence 6899999999999999987543
No 4
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=92.56 E-value=0.0094 Score=41.69 Aligned_cols=43 Identities=5% Similarity=0.127 Sum_probs=35.9
Q ss_pred CCCCChhcceeeEEEeccCCCc----chhhhcccccccccchhhhHHH
Q 015432 105 GKPLSPNDMVAIALRRLSSGES----LQIIGDLFGLNQSTVSQVTWRF 148 (407)
Q Consensus 105 ~~~l~~~~ql~i~L~~La~g~s----~~~la~~Fgis~sTvsr~i~~~ 148 (407)
++..+++.++.+ +.++..|.+ ...+|..|||+.+|+++++...
T Consensus 3 r~~ys~efK~~~-~~~~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~~~ 49 (59)
T 2glo_A 3 RRIFTPHFKLQV-LESYRNDNDCKGNQRATARKYNIHRRQIQKWLQCE 49 (59)
T ss_dssp CCCCCHHHHHHH-HHHHHHCTTTTTCHHHHHHHTTSCHHHHHHHHTTH
T ss_pred CCcCCHHHHHHH-HHHHHcCCCcchHHHHHHHHHCcCHHHHHHHHHHH
Confidence 456788888877 677788888 9999999999999999987543
No 5
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=92.17 E-value=0.065 Score=33.66 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.3
Q ss_pred CChhHHHhhcCCCHHHHHHHHH
Q 015432 66 KTSKNFESVFKISRKTFDYICS 87 (407)
Q Consensus 66 ~~d~~F~~~frmsr~tF~~L~~ 87 (407)
.+|++|...|+|+|+.|..|=.
T Consensus 3 Lsd~dF~~vFgmsr~eF~~LP~ 24 (37)
T 1und_A 3 LSEQDFVSVFGITRGQFAALPG 24 (37)
T ss_dssp CCHHHHHHHHSSCHHHHHHSCH
T ss_pred CCHHHHHHHHCcCHHHHHHChH
Confidence 4789999999999999998744
No 6
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=90.44 E-value=0.028 Score=43.39 Aligned_cols=43 Identities=26% Similarity=0.250 Sum_probs=35.5
Q ss_pred CCCChhcceeeEEEeccC-CCcchhhhcccccccccchhhhHHH
Q 015432 106 KPLSPNDMVAIALRRLSS-GESLQIIGDLFGLNQSTVSQVTWRF 148 (407)
Q Consensus 106 ~~l~~~~ql~i~L~~La~-g~s~~~la~~Fgis~sTvsr~i~~~ 148 (407)
+..+.+.++.++-.++.. |.+...||..||||.+|+++++...
T Consensus 4 ~~ys~e~k~~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~~~ 47 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCChHHHHHHHHCcCHHHHHHHHHHH
Confidence 457777777777667766 8999999999999999999987654
No 7
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=90.23 E-value=0.025 Score=37.61 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=23.1
Q ss_pred ccCCCcchhhhcccccccccchhhhH
Q 015432 121 LSSGESLQIIGDLFGLNQSTVSQVTW 146 (407)
Q Consensus 121 La~g~s~~~la~~Fgis~sTvsr~i~ 146 (407)
+..|.+...||..+|||.+||++++.
T Consensus 18 ~~~g~s~~~ia~~lgvs~~Tv~r~l~ 43 (52)
T 1jko_C 18 LEKGHPRQQLAIIFGIGVSTLYRYFP 43 (52)
T ss_dssp HHTTCCHHHHHHTTSCCHHHHHHHSC
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 56788999999999999999999764
No 8
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=90.21 E-value=0.028 Score=43.94 Aligned_cols=30 Identities=13% Similarity=0.161 Sum_probs=25.1
Q ss_pred CC-CcchhhhcccccccccchhhhHHHHHHHH
Q 015432 123 SG-ESLQIIGDLFGLNQSTVSQVTWRFVESME 153 (407)
Q Consensus 123 ~g-~s~~~la~~Fgis~sTvsr~i~~~~~al~ 153 (407)
.| .+|+.||...|||.|||||+ .+.+.-+.
T Consensus 56 ~ge~TQREIA~~lGiS~stISRi-~r~L~~l~ 86 (101)
T 1jhg_A 56 RGEMSQRELKNELGAGIATITRG-SNSLKAAP 86 (101)
T ss_dssp HCCSCHHHHHHHHCCCHHHHHHH-HHHHHHSC
T ss_pred cCCcCHHHHHHHHCCChhhhhHH-HHHHHHcc
Confidence 46 89999999999999999998 66655443
No 9
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=90.00 E-value=0.043 Score=41.49 Aligned_cols=48 Identities=19% Similarity=0.459 Sum_probs=41.2
Q ss_pred CCChhcceeeEEEe-cc--CCCcchhhhcccccccccchhhhHHHHHHHHH
Q 015432 107 PLSPNDMVAIALRR-LS--SGESLQIIGDLFGLNQSTVSQVTWRFVESMEE 154 (407)
Q Consensus 107 ~l~~~~ql~i~L~~-La--~g~s~~~la~~Fgis~sTvsr~i~~~~~al~~ 154 (407)
.+|..++-.+.|+| |. .|.++..||..+|||.+||..++.+....|..
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred hCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 47888888888888 44 78999999999999999999998887777754
No 10
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=89.99 E-value=0.033 Score=39.91 Aligned_cols=48 Identities=13% Similarity=0.344 Sum_probs=40.7
Q ss_pred CCChhcceeeEEEe-c--cCCCcchhhhcccccccccchhhhHHHHHHHHH
Q 015432 107 PLSPNDMVAIALRR-L--SSGESLQIIGDLFGLNQSTVSQVTWRFVESMEE 154 (407)
Q Consensus 107 ~l~~~~ql~i~L~~-L--a~g~s~~~la~~Fgis~sTvsr~i~~~~~al~~ 154 (407)
.+|+.++-.+.|+| | ..|.++.+||..+|+|.+||..+..+....|..
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred cCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 47888888888888 3 479999999999999999999998887766654
No 11
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=89.60 E-value=0.11 Score=40.34 Aligned_cols=49 Identities=12% Similarity=0.282 Sum_probs=42.6
Q ss_pred CCChhcceeeEEEec---cCCCcchhhhcccccccccchhhhHHHHHHHHHh
Q 015432 107 PLSPNDMVAIALRRL---SSGESLQIIGDLFGLNQSTVSQVTWRFVESMEER 155 (407)
Q Consensus 107 ~l~~~~ql~i~L~~L---a~g~s~~~la~~Fgis~sTvsr~i~~~~~al~~~ 155 (407)
.+|+.++-.+.|+|. ..+.++..||..+|||.+||..+..+....|-..
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~ 70 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 70 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 388899999999885 3789999999999999999999998888887653
No 12
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=89.27 E-value=0.053 Score=39.42 Aligned_cols=48 Identities=17% Similarity=0.404 Sum_probs=41.8
Q ss_pred CCCChhcceeeEEEec-c--CCCcchhhhcccccccccchhhhHHHHHHHH
Q 015432 106 KPLSPNDMVAIALRRL-S--SGESLQIIGDLFGLNQSTVSQVTWRFVESME 153 (407)
Q Consensus 106 ~~l~~~~ql~i~L~~L-a--~g~s~~~la~~Fgis~sTvsr~i~~~~~al~ 153 (407)
..+|+.++-.+.|+|+ . .|.++..||..+|+|.+||..+..+....|.
T Consensus 9 ~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3488888888888884 3 6899999999999999999999998888886
No 13
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=88.97 E-value=0.057 Score=41.17 Aligned_cols=48 Identities=21% Similarity=0.135 Sum_probs=40.5
Q ss_pred CChhcceeeEEEeccCCCcchhhhcccccccccchhhhHHHHHHHHHhc
Q 015432 108 LSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESMEERG 156 (407)
Q Consensus 108 l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~~al~~~~ 156 (407)
|+..++-++.|+|+ .|.++..||..+|||.+||...+.+....|...+
T Consensus 38 L~~~~r~vl~l~~~-~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 38 LSAEHRAVIQRSYY-RGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp SCHHHHHHHHHHHT-SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 77778877777665 6999999999999999999999988887776543
No 14
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=88.87 E-value=0.052 Score=38.73 Aligned_cols=48 Identities=19% Similarity=0.176 Sum_probs=40.0
Q ss_pred CCChhcceeeEEEeccCCCcchhhhcccccccccchhhhHHHHHHHHHh
Q 015432 107 PLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESMEER 155 (407)
Q Consensus 107 ~l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~~al~~~ 155 (407)
.+|+.++-.+.|+|+ .|.++..||..+|+|.+||.+.+.+....|...
T Consensus 15 ~L~~~~r~il~l~~~-~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~ 62 (70)
T 2o8x_A 15 DLTTDQREALLLTQL-LGLSYADAAAVCGCPVGTIRSRVARARDALLAD 62 (70)
T ss_dssp SSCHHHHHHHHHHHT-SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC-
T ss_pred hCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 478888877777664 689999999999999999999999888877654
No 15
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=86.60 E-value=0.3 Score=35.06 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=19.8
Q ss_pred CChhHHHhhcCCCHHHHHHHHHH
Q 015432 66 KTSKNFESVFKISRKTFDYICSL 88 (407)
Q Consensus 66 ~~d~~F~~~frmsr~tF~~L~~~ 88 (407)
.+|++|...|+|+++.|..|=..
T Consensus 34 LsdedF~~vFgmsr~eF~~LP~W 56 (68)
T 1qzp_A 34 LSAEDFSRVFAMSPEEFGKLALW 56 (68)
T ss_dssp BCHHHHHHHSSSCHHHHHHSCHH
T ss_pred CCHHHHHHHHCcCHHHHHHChHH
Confidence 47899999999999999987543
No 16
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=86.38 E-value=0.037 Score=42.75 Aligned_cols=50 Identities=28% Similarity=0.397 Sum_probs=43.8
Q ss_pred CCCCChhcceeeEEEeccCCCcchhhhccc-ccccccchhhhHHHHHHHHH
Q 015432 105 GKPLSPNDMVAIALRRLSSGESLQIIGDLF-GLNQSTVSQVTWRFVESMEE 154 (407)
Q Consensus 105 ~~~l~~~~ql~i~L~~La~g~s~~~la~~F-gis~sTvsr~i~~~~~al~~ 154 (407)
.+.+...-|++|.|.+--++.|+..||..| |...|||...+.++-..+.+
T Consensus 27 ~~~i~~aRqiamyL~r~~t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~~~~ 77 (94)
T 1j1v_A 27 SRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREE 77 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHTTSCCHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 345777889999998888999999999999 89999999999888887753
No 17
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=85.54 E-value=0.15 Score=36.59 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=37.5
Q ss_pred CCCChhcceeeEEEeccCCCcchhhhcccccccccchhhhHHHHHHHH
Q 015432 106 KPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESME 153 (407)
Q Consensus 106 ~~l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~~al~ 153 (407)
..++..++-.+.+ +..|.++..||..+|+|.+||+..+.+....|.
T Consensus 10 ~~L~~~e~~il~~--~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 10 PLLTKREREVFEL--LVQDKTTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCHHHHHHHHH--HTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 4577777766666 378999999999999999999999888776664
No 18
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=85.43 E-value=0.067 Score=40.43 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=32.9
Q ss_pred CCCChhcceeeEEEeccCCCcchhhhcccccccccchhhhHHHHH
Q 015432 106 KPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 106 ~~l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
+.++.+.+..+.-.+ ..|.+...||..||||.+|+++++.+.-.
T Consensus 21 ~~ys~e~k~~~v~~~-~~g~s~~~iA~~~gIs~sTl~rW~k~~~~ 64 (87)
T 2elh_A 21 RSLTPRDKIHAIQRI-HDGESKASVARDIGVPESTLRGWCKNEDK 64 (87)
T ss_dssp SSCCHHHHHHHHHHH-HHTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH-HCCCCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 356666655444333 56889999999999999999999866543
No 19
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=84.40 E-value=0.34 Score=34.65 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=19.8
Q ss_pred CChhHHHhhcCCCHHHHHHHHHH
Q 015432 66 KTSKNFESVFKISRKTFDYICSL 88 (407)
Q Consensus 66 ~~d~~F~~~frmsr~tF~~L~~~ 88 (407)
.+|++|...|+|+++.|..|=..
T Consensus 33 LsdedF~~vFgms~~eF~~LP~W 55 (67)
T 1yu8_X 33 LSDEDFKAVFGMTRSAFANLPLW 55 (67)
T ss_dssp SCHHHHHHHHSSCHHHHHTSCHH
T ss_pred CCHHHHHHHHCcCHHHHHHChHH
Confidence 47899999999999999987543
No 20
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=84.35 E-value=0.077 Score=43.39 Aligned_cols=43 Identities=12% Similarity=0.051 Sum_probs=33.7
Q ss_pred CCCCChhcceeeEEEeccCCCcchhhhcccccccccchhhhHHH
Q 015432 105 GKPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRF 148 (407)
Q Consensus 105 ~~~l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~ 148 (407)
+..++.+++..+... +..|.+...||..||||.+||++++.++
T Consensus 4 ~~~~s~~~r~~i~~~-~~~G~s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 4 GSALSDTERAQLDVM-KLLNVSLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp SCCCCHHHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHHSG
T ss_pred cccCCHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHHcc
Confidence 355777776655544 3679999999999999999999988654
No 21
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=84.00 E-value=0.15 Score=35.26 Aligned_cols=33 Identities=12% Similarity=0.219 Sum_probs=28.8
Q ss_pred ccCCCcchhhhcccccccccchhhhHHHHHHHH
Q 015432 121 LSSGESLQIIGDLFGLNQSTVSQVTWRFVESME 153 (407)
Q Consensus 121 La~g~s~~~la~~Fgis~sTvsr~i~~~~~al~ 153 (407)
+..|.++.+||..+|+|.+||..++.+...-|.
T Consensus 10 ~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~ 42 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISIKTVETHRMNMMRKLQ 42 (61)
T ss_dssp HHTSCCSHHHHHHTCSCHHHHHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHC
Confidence 578999999999999999999998887766653
No 22
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=83.59 E-value=0.34 Score=34.69 Aligned_cols=22 Identities=18% Similarity=0.451 Sum_probs=19.1
Q ss_pred CChhHHHhhcCCCHHHHHHHHH
Q 015432 66 KTSKNFESVFKISRKTFDYICS 87 (407)
Q Consensus 66 ~~d~~F~~~frmsr~tF~~L~~ 87 (407)
.+|++|...|+|+++.|..|=.
T Consensus 33 LsdedF~~vFgmsr~eF~~LP~ 54 (67)
T 2k6m_S 33 LTDEDFEFALDMTRDEYNALPA 54 (67)
T ss_dssp SCHHHHHHHTSSCHHHHTTSCH
T ss_pred CCHHHHHHHHCcCHHHHHHCcH
Confidence 4799999999999999987643
No 23
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=83.26 E-value=0.15 Score=42.41 Aligned_cols=44 Identities=20% Similarity=0.184 Sum_probs=35.6
Q ss_pred CCCChhcceeeEEEeccCCCcchhhhcccccccccchhhhHHHHH
Q 015432 106 KPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 106 ~~l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
+.++.+.+..+...+ ..|.+...||..||||.+||++++.++..
T Consensus 31 ~~~s~e~r~~iv~~~-~~G~s~~~iA~~lgis~~TV~rw~~~~~~ 74 (149)
T 1k78_A 31 RPLPDVVRQRIVELA-HQGVRPCDISRQLRVSHGCVSKILGRYYE 74 (149)
T ss_dssp SCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 457777776666555 47899999999999999999999987654
No 24
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=83.04 E-value=0.53 Score=34.71 Aligned_cols=46 Identities=22% Similarity=0.143 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHhhhhhhhhcCCCcCCCCCCCChhcceeeEEEeccCCCcchhhhcccccccccchhhhH
Q 015432 77 ISRKTFDYICSLVKEDLAARQSNFSFSNGKPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTW 146 (407)
Q Consensus 77 msr~tF~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~ 146 (407)
|++.....|+++|+..+..... ...+.++||..||+|.+||.+.+.
T Consensus 1 ~~~~r~~~IL~~I~~~i~~~~g------------------------~~psv~EIa~~lgvS~~TVrr~L~ 46 (77)
T 2jt1_A 1 MSESIVTKIISIVQERQNMDDG------------------------APVKTRDIADAAGLSIYQVRLYLE 46 (77)
T ss_dssp CCCTHHHHHHHHHHHHHHHHTT------------------------SCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhccC------------------------CCcCHHHHHHHHCCCHHHHHHHHH
Confidence 6777888899988876544200 134578999999999999877653
No 25
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=82.73 E-value=0.17 Score=37.71 Aligned_cols=45 Identities=20% Similarity=0.352 Sum_probs=36.2
Q ss_pred CCChhcceeeEEEeccCCCcchhhhcccccccccchhhhHHHHHHHH
Q 015432 107 PLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESME 153 (407)
Q Consensus 107 ~l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~~al~ 153 (407)
.++..++-.+.| +..|.++.+||..+|||.+||...+.+....|.
T Consensus 21 ~Lt~~e~~vl~l--~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 21 QLTPRERDILKL--IAQGLPNKMIARRLDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GSCHHHHHHHHH--HTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 367777666666 368999999999999999999998887666553
No 26
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=82.66 E-value=0.16 Score=40.49 Aligned_cols=43 Identities=21% Similarity=0.289 Sum_probs=33.9
Q ss_pred CCCChhcceeeEEEeccCCCcchhhhcccccccccchhhhHHHH
Q 015432 106 KPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFV 149 (407)
Q Consensus 106 ~~l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~ 149 (407)
+.++.+.+..+...+ ..|.+...||..||||.+||++++.++.
T Consensus 16 ~~~s~~~r~~i~~~~-~~g~s~~~ia~~lgis~~Tv~~w~~~~~ 58 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMA-ADGIRPCVISRQLRVSHGCVSKILNRYQ 58 (128)
T ss_dssp SCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456777666655443 5789999999999999999999987754
No 27
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=82.58 E-value=0.21 Score=44.33 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=44.0
Q ss_pred CCCChhcceeeEEEeccCCCcchhhhcccccccccchhhhHHHHHHHHHhcc
Q 015432 106 KPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESMEERGL 157 (407)
Q Consensus 106 ~~l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~~al~~~~~ 157 (407)
..||..++-++.|+|+ .|.++..||..+|||.+||.+.+.+....|...+.
T Consensus 186 ~~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l~ 236 (239)
T 1rp3_A 186 SKLPEREKLVIQLIFY-EELPAKEVAKILETSVSRVSQLKAKALERLREMLS 236 (239)
T ss_dssp TTSCHHHHHHHHHHHT-SCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHh-cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3489999999998886 59999999999999999999999988888876543
No 28
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=82.31 E-value=3.4 Score=38.87 Aligned_cols=171 Identities=9% Similarity=-0.038 Sum_probs=85.1
Q ss_pred hhHHHhhcC---CCHHHHHHHHHHhhhhhhhhcCCCcCCCCCCCChhcceeeEEEeccCCCcchhhhcccccccccchhh
Q 015432 68 SKNFESVFK---ISRKTFDYICSLVKEDLAARQSNFSFSNGKPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQV 144 (407)
Q Consensus 68 d~~F~~~fr---msr~tF~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~ 144 (407)
-..+.+.|+ +++.|+...+.........-...-..++...++. ++|.- +..-....+++.|+..++||.+||+++
T Consensus 29 ~~~l~~~~g~~~vs~~tv~~w~~r~~~g~~~l~~~~r~grp~~~~~-~~i~~-~v~~~~~~t~~~ia~~l~vs~~tV~r~ 106 (345)
T 3hot_A 29 HRMLVEAFGEQVPTVKTCERWFQRFKSGDFDVDDKEHGKPPKRYED-AELQA-LLDEDDAQTQKQLAEQLEVSQQAVSNR 106 (345)
T ss_dssp HHHHHHHTCSCSCCHHHHHHHHHHHTTCCCCCSCCCCCCCCCSSCH-HHHHH-HHHHCSCCCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHhCCCccccCCCCCCCCCcccH-HHHHH-HHHhCccchHHHHHHHHCCCHHHHHHH
Confidence 345667788 9999999998877642100000011122233443 22222 112234567889999999999999998
Q ss_pred hHHHHHHHHHhcccccc-CCChh--hHHHHHHHHHHh---hhCCcceeeeeeeeEEEeecCCCCCCcchhc---------
Q 015432 145 TWRFVESMEERGLHHLQ-WPSKE--TEMEDIKSKFEK---IRGFRNCCGAIDITHIVMNIPAVDPANNVWY--------- 209 (407)
Q Consensus 145 i~~~~~al~~~~~~~i~-~P~~~--~~~~~i~~~f~~---~~~fp~~vGaIDgt~i~i~~P~~~~~~~~y~--------- 209 (407)
+.+. . +.......+. ..+.. ....+.+..... ...+++-+-.+|-+.+....+.. ...|.
T Consensus 107 L~~~-g-~~~k~~~~~~~~l~~~~~~~r~~~~~~~l~~~~~~~~~~~Iv~~DE~~~~~~~~~~---~~~w~~~g~~~~~~ 181 (345)
T 3hot_A 107 LREM-G-KIQKVGRWVPHELNERQMERRKNTCEILLSRYKRKSFLHRIVTGDEKWIFFVNPKR---KKSYVDPGQPATST 181 (345)
T ss_dssp HHHT-T-CEEEECCEESSCCCHHHHHHHHHHHHHHHHHHHHSCCGGGEEEEEEEEEESCCCCC---CEEEECSSSCCCCE
T ss_pred HHHh-C-CeeeccccccccCChhhhhhhHHHHHHHHHhhCCcchHHhhhcccceeEEecCccc---eeeeccCCCCCCCC
Confidence 7651 1 1111111111 01221 111122222221 12366677789999988653211 11111
Q ss_pred --CCCCcceeEEEeeeCCCcceeeccccCCCcccccccc
Q 015432 210 --DREKNYSMILQGIVDPEMRFRDIIAGWPGSLTDALVL 246 (407)
Q Consensus 210 --~~k~~~s~~~q~v~d~~grf~~v~~g~pGs~~D~~v~ 246 (407)
...+..++.+.++.+..|.+.+....-.|+++ +..+
T Consensus 182 ~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~-~~~y 219 (345)
T 3hot_A 182 ARPNRFGKKTMLCVWWDQSGVIYYELLKPGETVN-AARY 219 (345)
T ss_dssp ECCCTTCCEEEEEEEEESSSEEEEEEECSSCCCC-HHHH
T ss_pred cCccCcCCcEEEEEEEcccCceeeEecCCCCccc-HHHH
Confidence 11122356677888888866555443223443 4433
No 29
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=82.13 E-value=0.22 Score=42.86 Aligned_cols=51 Identities=25% Similarity=0.300 Sum_probs=43.0
Q ss_pred CChhcceeeEEEeccCCCcchhhhcccccccccchhhhHHHHHHHHHhcccc
Q 015432 108 LSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESMEERGLHH 159 (407)
Q Consensus 108 l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~~al~~~~~~~ 159 (407)
+|..++-++.|+++ .|.++..||..+|||.+||...+.+....|.+.+..+
T Consensus 141 L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l~~~ 191 (194)
T 1or7_A 141 LPEDLRMAITLREL-DGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPL 191 (194)
T ss_dssp SCHHHHHHHHHHHT-TCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CCHHHHHHhHHHHH-cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888776 5899999999999999999999999988887765543
No 30
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=81.49 E-value=0.19 Score=40.04 Aligned_cols=48 Identities=27% Similarity=0.249 Sum_probs=39.6
Q ss_pred CChhcceeeEEEeccCCCcchhhhcccccccccchhhhHHHHHHHHHhc
Q 015432 108 LSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESMEERG 156 (407)
Q Consensus 108 l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~~al~~~~ 156 (407)
+|+.++-++.|+|+ .|.++..||..+|||.+||...+.+....|...+
T Consensus 23 L~~~~r~vl~l~y~-~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 23 LTDKQMNYIELYYA-DDYSLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp SCHHHHHHHHHHHH-TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 67777766666554 6999999999999999999999999888877654
No 31
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=81.20 E-value=0.21 Score=38.28 Aligned_cols=46 Identities=22% Similarity=0.240 Sum_probs=38.4
Q ss_pred CCChhcceeeEEEeccCCCcchhhhcccccccccchhhhHHHHHHHHH
Q 015432 107 PLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESMEE 154 (407)
Q Consensus 107 ~l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~~al~~ 154 (407)
.++..++-++.|+ ..|.++..||..+|||.+||..++.+...-|..
T Consensus 27 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 27 GLTDQERTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp CCCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 3777777777773 789999999999999999999998887777653
No 32
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=80.97 E-value=0.086 Score=41.25 Aligned_cols=49 Identities=29% Similarity=0.405 Sum_probs=43.2
Q ss_pred CCCChhcceeeEEEeccCCCcchhhhcccccccccchhhhHHHHHHHHH
Q 015432 106 KPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESMEE 154 (407)
Q Consensus 106 ~~l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~~al~~ 154 (407)
+.+...-|++|.|.+=-++.|+..||..||...|||...+.++-..+.+
T Consensus 32 ~~i~~aRqiAmYL~r~~t~~Sl~~IG~~fgRDHsTV~ha~~ki~~~~~~ 80 (101)
T 3pvv_A 32 RALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAE 80 (101)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHhCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 4567788999999888899999999999999999999999888887765
No 33
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=80.93 E-value=0.3 Score=40.58 Aligned_cols=49 Identities=16% Similarity=0.168 Sum_probs=39.6
Q ss_pred CCCCCChhcceeeEEEe--ccCCCcchhhhc----cc--ccccccchhhhHHHHHHH
Q 015432 104 NGKPLSPNDMVAIALRR--LSSGESLQIIGD----LF--GLNQSTVSQVTWRFVESM 152 (407)
Q Consensus 104 ~~~~l~~~~ql~i~L~~--La~g~s~~~la~----~F--gis~sTvsr~i~~~~~al 152 (407)
.+..++.++++.|..++ -..+.+..+||. .| +||+|||++++..=-..+
T Consensus 8 ~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~~~l 64 (144)
T 1iuf_A 8 KRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKYSYL 64 (144)
T ss_dssp SSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHHHHT
T ss_pred cCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHHHHh
Confidence 45679999999999888 345568889999 99 999999999997754444
No 34
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=80.90 E-value=0.17 Score=39.01 Aligned_cols=45 Identities=7% Similarity=-0.015 Sum_probs=39.6
Q ss_pred CCCCCChhcceeeEEEeccCCCcchhhhcccccccccchhhhHHH
Q 015432 104 NGKPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRF 148 (407)
Q Consensus 104 ~~~~l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~ 148 (407)
..+..+.+.++.+++..+..+.++.+++.+|+||.+++.++...+
T Consensus 29 ~~rrWs~~~Kl~VV~~~~~g~~s~~e~arry~Is~s~i~~W~r~~ 73 (95)
T 2jrt_A 29 DTRRWVASRKAAVVKAVIHGLITEREALDRYSLSEEEFALWRSAV 73 (95)
T ss_dssp SCCCCCHHHHHHHHHHHHTTSSCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred hhhccCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 345689999999999999999999999999999999988876554
No 35
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=80.86 E-value=0.24 Score=39.39 Aligned_cols=48 Identities=21% Similarity=0.173 Sum_probs=40.0
Q ss_pred CChhcceeeEEEeccCCCcchhhhcccccccccchhhhHHHHHHHHHhc
Q 015432 108 LSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESMEERG 156 (407)
Q Consensus 108 l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~~al~~~~ 156 (407)
+|+.++-++.|+| ..|.++..||..+|+|.+||...+.+....|...+
T Consensus 26 L~~~~r~vl~l~~-~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 26 LTNKQRNYLELFY-LEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp SCHHHHHHHHHHH-TSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 6777777666655 46999999999999999999999999888887654
No 36
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=79.49 E-value=0.47 Score=35.79 Aligned_cols=27 Identities=19% Similarity=0.397 Sum_probs=21.6
Q ss_pred CChhHHHhhcCCCHHHHHHHHHHhhhh
Q 015432 66 KTSKNFESVFKISRKTFDYICSLVKED 92 (407)
Q Consensus 66 ~~d~~F~~~frmsr~tF~~L~~~l~~~ 92 (407)
.+|++|...|+|+++.|..|=..=+..
T Consensus 48 LSdedF~~vFgMsr~eF~~LP~WKq~~ 74 (88)
T 1ujs_A 48 LSQEEFYQVFGMTISEFDRLALWKRNE 74 (88)
T ss_dssp SCTTHHHHHHSSCHHHHTTSCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHChHHHHHH
Confidence 578999999999999999876543333
No 37
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=79.42 E-value=0.24 Score=37.54 Aligned_cols=44 Identities=23% Similarity=0.258 Sum_probs=35.8
Q ss_pred CChhcceeeEEEeccCCCcchhhhcccccccccchhhhHHHHHHHH
Q 015432 108 LSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESME 153 (407)
Q Consensus 108 l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~~al~ 153 (407)
++..++-.+.| +..|.++..||..+|||.+||...+.+....|.
T Consensus 30 Lt~~e~~vl~l--~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 30 LTEREMEILLL--IAKGYSNQEIASASHITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp CCSHHHHHHHH--HHTTCCTTHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 67777766666 368999999999999999999998877666553
No 38
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=79.21 E-value=0.33 Score=32.71 Aligned_cols=26 Identities=19% Similarity=0.283 Sum_probs=23.0
Q ss_pred ccCCCcchhhhcccccccccchhhhH
Q 015432 121 LSSGESLQIIGDLFGLNQSTVSQVTW 146 (407)
Q Consensus 121 La~g~s~~~la~~Fgis~sTvsr~i~ 146 (407)
+..|.++..||..+|||.+||++++.
T Consensus 28 ~~~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 28 AKMGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 45788999999999999999999864
No 39
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=79.06 E-value=0.5 Score=39.48 Aligned_cols=51 Identities=18% Similarity=0.200 Sum_probs=43.7
Q ss_pred CCCChhcceeeEEEeccCCCcchhhhcccccccccchhhhHHHHHHHHHhcc
Q 015432 106 KPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESMEERGL 157 (407)
Q Consensus 106 ~~l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~~al~~~~~ 157 (407)
..+|+.++-++.|+++ .|.++..||..+|||.+||...+.+....|.+.+.
T Consensus 92 ~~Lp~~~r~vl~L~~~-~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~ 142 (157)
T 2lfw_A 92 ARMTPLSRQALLLTAM-EGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTR 142 (157)
T ss_dssp TTSCTTHHHHHTTTSS-SCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSS
T ss_pred HhCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 3588888888888776 48999999999999999999999998888877654
No 40
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=78.88 E-value=0.25 Score=40.01 Aligned_cols=49 Identities=14% Similarity=0.079 Sum_probs=37.7
Q ss_pred CCCCChhcceeeEEEeccCCCcch-hhhcccccccccchhhhHHHHHHHH
Q 015432 105 GKPLSPNDMVAIALRRLSSGESLQ-IIGDLFGLNQSTVSQVTWRFVESME 153 (407)
Q Consensus 105 ~~~l~~~~ql~i~L~~La~g~s~~-~la~~Fgis~sTvsr~i~~~~~al~ 153 (407)
+..++.+.++.+.-.+..+|.+.. .+|..||||++|+++++...-....
T Consensus 5 r~~~t~e~K~~iv~~~~~~g~~~~~~~A~~~gvs~stl~~~~~~~~~~~~ 54 (131)
T 1hlv_A 5 RRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAILA 54 (131)
T ss_dssp SCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTHHHHHH
T ss_pred ceeCCHHHHHHHHHHHHHCCCCcHHHHHHHhCCCHHHHHHHHhchhhhcc
Confidence 456888888777665556676665 9999999999999999987655443
No 41
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=78.82 E-value=0.4 Score=42.49 Aligned_cols=44 Identities=14% Similarity=0.299 Sum_probs=0.0
Q ss_pred CCChhcceeeEEEeccCCCcchhhhcccccccccchhhhHHHHHH
Q 015432 107 PLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVES 151 (407)
Q Consensus 107 ~l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~~a 151 (407)
.||..++-++.|+|+ .|.++..||..+|||.+||.+.+.+....
T Consensus 198 ~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~tV~~~~~ra~~~ 241 (243)
T 1l0o_C 198 ELDERERLIVYLRYY-KDQTQSEVASRLGISQVQMSRLEKKILQH 241 (243)
T ss_dssp ---------------------------------------------
T ss_pred hCCHHHHHHHHHHHh-cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 488888988888886 68999999999999999999988776543
No 42
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=77.92 E-value=0.23 Score=36.25 Aligned_cols=43 Identities=16% Similarity=0.123 Sum_probs=33.2
Q ss_pred CChhcceeeEEEeccCCCcchhhhcccccccccchhhhHHHHHHH
Q 015432 108 LSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESM 152 (407)
Q Consensus 108 l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~~al 152 (407)
++..++-.+.| + ..|.++..||..+|+|.+||...+.+...-|
T Consensus 17 L~~~e~~vl~l-~-~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl 59 (79)
T 1x3u_A 17 LSERERQVLSA-V-VAGLPNKSIAYDLDISPRTVEVHRANVMAKM 59 (79)
T ss_dssp HCHHHHHHHHH-H-TTTCCHHHHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHH-H-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 44445555555 3 6899999999999999999999887766655
No 43
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=77.29 E-value=0.45 Score=40.45 Aligned_cols=47 Identities=11% Similarity=0.082 Sum_probs=40.7
Q ss_pred CChhcceeeEEEeccCCCcchhhhcccccccccchhhhHHHHHHHHHh
Q 015432 108 LSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESMEER 155 (407)
Q Consensus 108 l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~~al~~~ 155 (407)
+|..++-++.|+++ .|.++..||..+|||.+||...+.+....|.+.
T Consensus 136 L~~~~r~vl~l~~~-~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 136 LPEAQRALIERAFF-GDLTHRELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp SCHHHHHHHHHHHH-SCCSSCCSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 78888888888776 589999999999999999999998888777653
No 44
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=76.98 E-value=0.12 Score=40.61 Aligned_cols=42 Identities=17% Similarity=0.100 Sum_probs=31.9
Q ss_pred CCCChhcceeeEEEeccCC-------CcchhhhcccccccccchhhhHH
Q 015432 106 KPLSPNDMVAIALRRLSSG-------ESLQIIGDLFGLNQSTVSQVTWR 147 (407)
Q Consensus 106 ~~l~~~~ql~i~L~~La~g-------~s~~~la~~Fgis~sTvsr~i~~ 147 (407)
+..+.+.++.++..++..+ .++..||..||||.+|+++++..
T Consensus 5 ~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~ 53 (108)
T 2rn7_A 5 TRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQ 53 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHH
Confidence 4566666666665555544 78899999999999999987754
No 45
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=75.93 E-value=0.47 Score=39.24 Aligned_cols=47 Identities=19% Similarity=0.184 Sum_probs=38.7
Q ss_pred CChhcceeeEEEeccCCCcchhhhcccccccccchhhhHHHHHHHHHhc
Q 015432 108 LSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESMEERG 156 (407)
Q Consensus 108 l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~~al~~~~ 156 (407)
+|..++-++. + .-.|.++..||..+|||.+||...+.+....|.+.+
T Consensus 110 L~~~~r~v~~-~-~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l 156 (164)
T 3mzy_A 110 FSKFEKEVLT-Y-LIRGYSYREIATILSKNLKSIDNTIQRIRKKSEEWI 156 (164)
T ss_dssp SCHHHHHHHH-H-HTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-H-HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 6777776666 4 447999999999999999999999988888777654
No 46
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=75.47 E-value=0.44 Score=36.94 Aligned_cols=46 Identities=20% Similarity=0.220 Sum_probs=37.6
Q ss_pred CCCChhcceeeEEEeccCCCcchhhhcccccccccchhhhHHHHHHHH
Q 015432 106 KPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESME 153 (407)
Q Consensus 106 ~~l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~~al~ 153 (407)
..++..++-.+.| +..|.++.+||..+|||.+||..++.+....|.
T Consensus 33 ~~Lt~re~~Vl~l--~~~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 33 KRLSPKESEVLRL--FAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSCCHHHHHHHHH--HHHTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 5588877766555 468999999999999999999998887776664
No 47
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=74.73 E-value=2.2 Score=32.46 Aligned_cols=49 Identities=16% Similarity=0.326 Sum_probs=35.2
Q ss_pred HHhhcCCCHHHHHHHHHHhhhhhhhhcCCCcCCCCCCCChhcceeeEEEeccCCCcchhhhcccccccccchhhhHHHH
Q 015432 71 FESVFKISRKTFDYICSLVKEDLAARQSNFSFSNGKPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFV 149 (407)
Q Consensus 71 F~~~frmsr~tF~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~ 149 (407)
+...++++...+..|..++.. ..+.+..+|+..+|+|++||++++....
T Consensus 13 ~~~~~~l~~~~~~~l~~l~~~------------------------------~~~~t~~ela~~l~is~~tv~~~l~~L~ 61 (109)
T 2d1h_A 13 IRCCYKITDTDVAVLLKMVEI------------------------------EKPITSEELADIFKLSKTTVENSLKKLI 61 (109)
T ss_dssp HHHHHTCCHHHHHHHHHHHHH------------------------------CSCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHhhcCCHHHHHHHHHHHHc------------------------------CCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344567777777776666542 1245678999999999999999876653
No 48
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=74.55 E-value=0.63 Score=33.01 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=18.4
Q ss_pred cchhhhcccccccccchhhhH
Q 015432 126 SLQIIGDLFGLNQSTVSQVTW 146 (407)
Q Consensus 126 s~~~la~~Fgis~sTvsr~i~ 146 (407)
+..+||...|||++|||++++
T Consensus 2 T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 2 KLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHc
Confidence 467899999999999999764
No 49
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=72.93 E-value=1.1 Score=39.57 Aligned_cols=82 Identities=6% Similarity=-0.103 Sum_probs=53.7
Q ss_pred CChhHHHhhcCCCHHHHHHHHHHhhhhhhhhcCCCcCCCCCCCChhcceeeEEEeccCC--------Ccchhhhcccccc
Q 015432 66 KTSKNFESVFKISRKTFDYICSLVKEDLAARQSNFSFSNGKPLSPNDMVAIALRRLSSG--------ESLQIIGDLFGLN 137 (407)
Q Consensus 66 ~~d~~F~~~frmsr~tF~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~ql~i~L~~La~g--------~s~~~la~~Fgis 137 (407)
.+-+.|...+.-.+.....+...+...+....... ..-...+++++|+-+|..++.. .+..+||...|++
T Consensus 122 i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~--~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~s 199 (232)
T 1zyb_A 122 ISKAFVLSDLFRYDIFRLNYMNIVSNRAQNLYSRL--WDEPTLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDT 199 (232)
T ss_dssp EEHHHHHHTGGGSHHHHHHHHHHHHHHHHHHHHHT--TSCCCCSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSC
T ss_pred EEHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH--HHHhhcCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCCC
Confidence 34566666666666555555555544433221111 1224578899999988877532 4678999999999
Q ss_pred cccchhhhHHHH
Q 015432 138 QSTVSQVTWRFV 149 (407)
Q Consensus 138 ~sTvsr~i~~~~ 149 (407)
+.|++|++.++.
T Consensus 200 r~tvsR~l~~l~ 211 (232)
T 1zyb_A 200 RLNISKTLNELQ 211 (232)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 999999887653
No 50
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=72.08 E-value=0.32 Score=40.80 Aligned_cols=41 Identities=20% Similarity=0.128 Sum_probs=31.7
Q ss_pred CCCChhcceeeEEEeccCCCcchhhhcccccccccchhhhHH
Q 015432 106 KPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWR 147 (407)
Q Consensus 106 ~~l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~ 147 (407)
+.++.+.+..+...+ ..|.+...||..||||.+||++++.+
T Consensus 24 ~~~s~e~r~~ii~l~-~~G~s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLA-HQGVRPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHH-HHTCCHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 456666666554444 57899999999999999999998754
No 51
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=71.60 E-value=0.87 Score=35.65 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=23.3
Q ss_pred eccCCCcchhhhcccccccccchhhh
Q 015432 120 RLSSGESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 120 ~La~g~s~~~la~~Fgis~sTvsr~i 145 (407)
.|..|.+|+.|+...|+|.+||+|+-
T Consensus 54 lL~~G~SyreIa~~tG~StaTIsRv~ 79 (107)
T 3frw_A 54 MLTDKRTYLDISEKTGASTATISRVN 79 (107)
T ss_dssp HHHTTCCHHHHHHHHCCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCccHHHHHHHH
Confidence 47789999999999999999999853
No 52
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=71.43 E-value=0.45 Score=36.10 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=33.8
Q ss_pred CCCChhcceeeEEEeccCCCcchhhhcccccccccchhhhHHHHHHH
Q 015432 106 KPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESM 152 (407)
Q Consensus 106 ~~l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~~al 152 (407)
..++..++-.+.| ++.|.++..||..+|||.+||..++.+...-|
T Consensus 28 ~~Lt~rE~~Vl~l--~~~G~s~~eIA~~L~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 28 DVLTPRECLILQE--VEKGFTNQEIADALHLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp -CCCHHHHHHHHH--HHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 3466655544444 34799999999999999999999888776555
No 53
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=69.99 E-value=1.4 Score=35.49 Aligned_cols=77 Identities=14% Similarity=0.043 Sum_probs=48.5
Q ss_pred ChhHHHhhcCCCHHHHHHHHHHhhhhhhhhcCCCcCCCCCCCChhcceeeEEEeccCCCcchhhhcccc--cccccchhh
Q 015432 67 TSKNFESVFKISRKTFDYICSLVKEDLAARQSNFSFSNGKPLSPNDMVAIALRRLSSGESLQIIGDLFG--LNQSTVSQV 144 (407)
Q Consensus 67 ~d~~F~~~frmsr~tF~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~ql~i~L~~La~g~s~~~la~~Fg--is~sTvsr~ 144 (407)
+-.+--+.+++++.|+...+.......... ..++...++.++...+.-.......+...|+..+| +|.+||+++
T Consensus 24 s~~~ia~~lgis~~Tv~r~~~~~~~~g~~~----~~gr~~~l~~~~~~~i~~~~~~~~~s~~~i~~~lg~~~s~~tV~r~ 99 (141)
T 1u78_A 24 SLHEMSRKISRSRHCIRVYLKDPVSYGTSK----RAPRRKALSVRDERNVIRAASNSCKTARDIRNELQLSASKRTILNV 99 (141)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHSGGGTTCCC----CCCCCCSSCHHHHHHHHHHHHHCCCCHHHHHHHTTCCSCHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHcccccCCcC----CCCCCCcCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCccHHHHHHH
Confidence 445666788999999988877654321111 11233446665443222112233478899999998 799999998
Q ss_pred hHH
Q 015432 145 TWR 147 (407)
Q Consensus 145 i~~ 147 (407)
+.+
T Consensus 100 l~~ 102 (141)
T 1u78_A 100 IKR 102 (141)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 54
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=69.46 E-value=3.4 Score=32.94 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=22.7
Q ss_pred CcchhhhcccccccccchhhhHHHHHH
Q 015432 125 ESLQIIGDLFGLNQSTVSQVTWRFVES 151 (407)
Q Consensus 125 ~s~~~la~~Fgis~sTvsr~i~~~~~a 151 (407)
.+..+|+..+++|+|||++.+.+....
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~L~~~ 69 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKKLHEK 69 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 467899999999999999988776553
No 55
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=68.79 E-value=0.74 Score=32.87 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=19.0
Q ss_pred Ccchhhhcccccccccchhhh
Q 015432 125 ESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 125 ~s~~~la~~Fgis~sTvsr~i 145 (407)
.+..+||...|||.+|||+++
T Consensus 10 ~t~~diA~~aGVS~sTVSr~l 30 (67)
T 2l8n_A 10 ATMKDVALKAKVSTATVSRAL 30 (67)
T ss_dssp CCHHHHHHHTTCCHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHH
Confidence 468899999999999999976
No 56
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=64.63 E-value=3.4 Score=33.45 Aligned_cols=45 Identities=22% Similarity=0.358 Sum_probs=29.0
Q ss_pred HHHHHHHHhhhhhhhhcCCCcCCCCCCCChhcceeeEEEeccCCCcchhhhcccccccccchhhh
Q 015432 81 TFDYICSLVKEDLAARQSNFSFSNGKPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 81 tF~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i 145 (407)
-+..|.+.|+..+... .+.+.++| .+.+.+|..||||++||.+.+
T Consensus 15 lY~QI~~~i~~~I~~G----------~l~pG~~L----------Pser~La~~~gVSr~tVReAl 59 (134)
T 4ham_A 15 IYEQIVQKIKEQVVKG----------VLQEGEKI----------LSIREFASRIGVNPNTVSKAY 59 (134)
T ss_dssp HHHHHHHHHHHHHHHT----------SSCTTCEE----------CCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC----------CCCCCCCC----------ccHHHHHHHHCCCHHHHHHHH
Confidence 4677777777666542 12222222 245789999999999998744
No 57
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=64.30 E-value=4.3 Score=30.19 Aligned_cols=23 Identities=13% Similarity=0.299 Sum_probs=19.1
Q ss_pred cchhhhcccccccccchhhhHHH
Q 015432 126 SLQIIGDLFGLNQSTVSQVTWRF 148 (407)
Q Consensus 126 s~~~la~~Fgis~sTvsr~i~~~ 148 (407)
.+..+|+..||+.||+||+-+.+
T Consensus 26 gQ~~vAe~~GvdeStISR~k~~~ 48 (83)
T 1zs4_A 26 GTEKTAEAVGVDKSQISRWKRDW 48 (83)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHT
T ss_pred hhHHHHHHhCCCHHHHhhhhhhH
Confidence 45789999999999999965544
No 58
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=62.41 E-value=1.4 Score=35.25 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=25.1
Q ss_pred EEEeccCCCcchhhhcccccccccchhhh
Q 015432 117 ALRRLSSGESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 117 ~L~~La~g~s~~~la~~Fgis~sTvsr~i 145 (407)
++..|+.|.+|+.|+...|+|.+||+|+-
T Consensus 68 V~klL~~G~syreIA~~~g~S~aTIsRv~ 96 (119)
T 3kor_A 68 VAKMIKQGYTYATIEQESGASTATISRVK 96 (119)
T ss_dssp HHHHHHHTCCHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHCCCHHHHHHHH
Confidence 34557889999999999999999999854
No 59
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=61.56 E-value=1.7 Score=37.64 Aligned_cols=36 Identities=17% Similarity=0.064 Sum_probs=0.0
Q ss_pred cceeeEEEeccCCCcchhhhcccccccccchhhhHH
Q 015432 112 DMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWR 147 (407)
Q Consensus 112 ~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~ 147 (407)
+++--...++..|.++..||..+|||.+|+++++..
T Consensus 146 ~~~~~i~~l~~~G~s~~~Ia~~l~vs~~Tvyr~l~~ 181 (193)
T 3uj3_X 146 AEWEQAGRLLAQGIPRKQVALIYDVALSTLYKKHPA 181 (193)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 344445556678999999999999999999998754
No 60
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=60.61 E-value=2.3 Score=34.25 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=20.6
Q ss_pred CCCcchhhhcccccccccchhhhHHHHH
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
.+.+..+||..+|++++||++++.+...
T Consensus 50 ~~~t~~eLa~~l~~~~~tvs~~l~~L~~ 77 (142)
T 3ech_A 50 RGLNLQDLGRQMCRDKALITRKIRELEG 77 (142)
T ss_dssp TTCCHHHHHHHHC---CHHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3678899999999999999998776554
No 61
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=60.20 E-value=1.7 Score=32.20 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=20.5
Q ss_pred CCcchhhhcccccccccchhhh
Q 015432 124 GESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i 145 (407)
|.++..+|...|||++|++.++
T Consensus 32 GikQ~eLAK~iGIsqsTLSaIe 53 (83)
T 2l1p_A 32 DMNQSSLAKECPLSQSMISSIV 53 (83)
T ss_dssp TSCHHHHHHHSSSCHHHHHHHH
T ss_pred hcCHHHHHHHcCCCHHHHHHHH
Confidence 8999999999999999999875
No 62
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=59.90 E-value=1.6 Score=33.28 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.3
Q ss_pred CcchhhhcccccccccchhhhHH
Q 015432 125 ESLQIIGDLFGLNQSTVSQVTWR 147 (407)
Q Consensus 125 ~s~~~la~~Fgis~sTvsr~i~~ 147 (407)
.+..+||..+|||.+||+++++.
T Consensus 21 ~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 21 KTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC
Confidence 46789999999999999998864
No 63
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=58.63 E-value=3.1 Score=30.32 Aligned_cols=25 Identities=8% Similarity=0.088 Sum_probs=20.7
Q ss_pred CCcchhhhcccccccccchhhhHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRF 148 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~ 148 (407)
..+..+||..+|+|++||++.+...
T Consensus 14 ~~s~~eLa~~lgvs~~tv~r~L~~L 38 (81)
T 2htj_A 14 GGKTAEIAEALAVTDYQARYYLLLL 38 (81)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3577899999999999999876543
No 64
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=58.40 E-value=2.1 Score=35.22 Aligned_cols=31 Identities=35% Similarity=0.293 Sum_probs=26.4
Q ss_pred EEEeccCCCcchhhhccccc-ccccchhhhHH
Q 015432 117 ALRRLSSGESLQIIGDLFGL-NQSTVSQVTWR 147 (407)
Q Consensus 117 ~L~~La~g~s~~~la~~Fgi-s~sTvsr~i~~ 147 (407)
.+.+|+.|.+...++..+|| |.+|+++++.+
T Consensus 21 I~~~i~~G~sl~~i~~~~~~ps~~T~~~W~~~ 52 (140)
T 4dyq_A 21 ICSLLSSGESLLKVCKRPGMPDKSTVFRWLAK 52 (140)
T ss_dssp HHHHHHTTCCHHHHHTSTTCCCHHHHHHHHHH
T ss_pred HHHHHHCCCcHHHHHhcCCCCCHHHHHHHHHc
Confidence 34455679999999999999 99999999876
No 65
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=57.35 E-value=2.9 Score=29.56 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=20.3
Q ss_pred CCcchhhhcccccccccchhhhHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRF 148 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~ 148 (407)
..+..+||..+|+|++||++++...
T Consensus 25 ~~s~~eLA~~lglsr~tv~~~l~~L 49 (67)
T 2heo_A 25 PVAIFQLVKKCQVPKKTLNQVLYRL 49 (67)
T ss_dssp CEEHHHHHHHHCSCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3566899999999999999876543
No 66
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=57.08 E-value=2.4 Score=29.39 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.7
Q ss_pred cCCCcchhhhcccccccccchhhh
Q 015432 122 SSGESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 122 a~g~s~~~la~~Fgis~sTvsr~i 145 (407)
..| ++..+|..+|||++||++++
T Consensus 12 ~~g-s~~~~A~~lgis~~~vs~~~ 34 (67)
T 2pij_A 12 EHG-TQSALAAALGVNQSAISQMV 34 (67)
T ss_dssp HTC-CHHHHHHHHTSCHHHHHHHH
T ss_pred HcC-CHHHHHHHHCcCHHHHHHHH
Confidence 356 99999999999999999987
No 67
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=57.06 E-value=12 Score=30.05 Aligned_cols=27 Identities=11% Similarity=0.254 Sum_probs=17.0
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
+.+..+|+..++++++||++++.+...
T Consensus 57 ~~t~~eLa~~l~~~~~~vs~~l~~L~~ 83 (148)
T 3jw4_A 57 GIIQKDLAQFFGRRGASITSMLQGLEK 83 (148)
T ss_dssp CCCHHHHHHC------CHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 567889999999999999998776544
No 68
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=56.03 E-value=11 Score=30.47 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=22.4
Q ss_pred CCCcchhhhcccccccccchhhhHHHH
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVTWRFV 149 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i~~~~ 149 (407)
.+.+..+||..++++++||++++.+..
T Consensus 50 ~~~t~~eLa~~l~~~~~~vs~~l~~Le 76 (151)
T 3kp7_A 50 EALTVGQITEKQGVNKAAVSRRVKKLL 76 (151)
T ss_dssp SCBCHHHHHHHHCSCSSHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 467789999999999999998776543
No 69
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=55.79 E-value=2.7 Score=29.98 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=21.9
Q ss_pred ccCCCcchhhhcccccccccchhhh
Q 015432 121 LSSGESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 121 La~g~s~~~la~~Fgis~sTvsr~i 145 (407)
-..|.++.++|...|||++|+++|-
T Consensus 21 ~~~gltq~elA~~~gvs~~tis~~E 45 (73)
T 3fmy_A 21 KKLSLTQKEASEIFGGGVNAFSRYE 45 (73)
T ss_dssp HHTTCCHHHHHHHHCSCTTHHHHHH
T ss_pred HHcCCCHHHHHHHhCcCHHHHHHHH
Confidence 3468999999999999999999864
No 70
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=55.65 E-value=1.9 Score=42.66 Aligned_cols=47 Identities=21% Similarity=0.480 Sum_probs=41.0
Q ss_pred CCChhcceeeEEEe-cc--CCCcchhhhcccccccccchhhhHHHHHHHH
Q 015432 107 PLSPNDMVAIALRR-LS--SGESLQIIGDLFGLNQSTVSQVTWRFVESME 153 (407)
Q Consensus 107 ~l~~~~ql~i~L~~-La--~g~s~~~la~~Fgis~sTvsr~i~~~~~al~ 153 (407)
.|+..++-.+.|+| |. .+.++..||..+|||.+||.++..+...-|.
T Consensus 375 ~L~ereR~VI~LRygL~~~e~~TleEIAe~LgIS~erVRqi~~RAlkKLR 424 (438)
T 1l9z_H 375 KLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 424 (438)
T ss_pred hCCHHHHHHHHHHHhccCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 37888888999988 44 6789999999999999999999988887776
No 71
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=55.61 E-value=1.8 Score=37.67 Aligned_cols=28 Identities=25% Similarity=0.192 Sum_probs=24.6
Q ss_pred eccCCCcchhhhcccccccccchhhhHH
Q 015432 120 RLSSGESLQIIGDLFGLNQSTVSQVTWR 147 (407)
Q Consensus 120 ~La~g~s~~~la~~Fgis~sTvsr~i~~ 147 (407)
++..|.++..||..+|||++||+|++..
T Consensus 20 ~y~~g~tQ~eIA~~lGiSr~~VSR~L~~ 47 (192)
T 1zx4_A 20 MKNDGMSQKDIAAKEGLSQAKVTRALQA 47 (192)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHHHHH
Confidence 3568999999999999999999997654
No 72
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=55.61 E-value=9.8 Score=30.14 Aligned_cols=25 Identities=4% Similarity=0.033 Sum_probs=20.6
Q ss_pred CCcchhhhcccccccccchhhhHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRF 148 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~ 148 (407)
+.+..+|+..++++++||++.+.+.
T Consensus 45 ~~~~~ela~~l~is~~~vs~~l~~L 69 (142)
T 3bdd_A 45 PLHQLALQERLQIDRAAVTRHLKLL 69 (142)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4567899999999999999876543
No 73
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=55.39 E-value=2.6 Score=36.52 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=1.0
Q ss_pred CCChhcceeeEEEeccC-------CCcchhhhcccccccccchhhhHHHHH
Q 015432 107 PLSPNDMVAIALRRLSS-------GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 107 ~l~~~~ql~i~L~~La~-------g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
..+++++|+.+|..++. ..+..+||...|+++.||+|++.++.+
T Consensus 140 ~~~~~~Rl~~~L~~~~~~~g~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~ 190 (213)
T 1o5l_A 140 TKTLREKLMNFLVRHMNEKRELTLPVTLEELSRLFGCARPALSRVFQELER 190 (213)
T ss_dssp CC-------------------------------------------------
T ss_pred hCCHHHHHHHHHHHHhccCCcccCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 36788999999988773 357889999999999999999887653
No 74
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=55.29 E-value=11 Score=28.16 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=22.8
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
+.+..+|+..+|++++||++++.+...
T Consensus 34 ~~s~~ela~~l~is~~tv~~~l~~L~~ 60 (109)
T 1sfx_A 34 GMRVSEIARELDLSARFVRDRLKVLLK 60 (109)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456789999999999999998876654
No 75
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=54.84 E-value=1.1 Score=33.37 Aligned_cols=26 Identities=8% Similarity=0.290 Sum_probs=21.8
Q ss_pred CCCcchhhhcccccccccchhhhHHH
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVTWRF 148 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i~~~ 148 (407)
.|.+...||..+|||++||.+.+.+.
T Consensus 29 ~g~sa~eLAk~LgiSk~aVr~~L~~L 54 (82)
T 1oyi_A 29 EGATAAQLTRQLNMEKREVNKALYDL 54 (82)
T ss_dssp STEEHHHHHHHSSSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45788999999999999998876554
No 76
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=54.47 E-value=1.9 Score=42.52 Aligned_cols=46 Identities=22% Similarity=0.509 Sum_probs=36.8
Q ss_pred CChhcceeeEEEe-cc--CCCcchhhhcccccccccchhhhHHHHHHHH
Q 015432 108 LSPNDMVAIALRR-LS--SGESLQIIGDLFGLNQSTVSQVTWRFVESME 153 (407)
Q Consensus 108 l~~~~ql~i~L~~-La--~g~s~~~la~~Fgis~sTvsr~i~~~~~al~ 153 (407)
|+..++-.+.|+| |. .+.++..||..||||..||.++..+...-|-
T Consensus 361 L~~rer~Vl~lr~~L~~~e~~Tl~EIA~~lgiS~erVrqi~~rAl~kLR 409 (423)
T 2a6h_F 361 LSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENKALRKLK 409 (423)
T ss_dssp SCHHHHHHHHHHHHTTCC-----CHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 7888998999988 54 5789999999999999999999988888776
No 77
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=54.32 E-value=2.9 Score=30.13 Aligned_cols=21 Identities=14% Similarity=0.029 Sum_probs=18.8
Q ss_pred cchhhhcccccccccchhhhH
Q 015432 126 SLQIIGDLFGLNQSTVSQVTW 146 (407)
Q Consensus 126 s~~~la~~Fgis~sTvsr~i~ 146 (407)
+...+|..+|||++||++++.
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~ 32 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQ 32 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHh
Confidence 478999999999999999875
No 78
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=54.22 E-value=5.9 Score=30.42 Aligned_cols=25 Identities=12% Similarity=0.279 Sum_probs=20.2
Q ss_pred CcchhhhcccccccccchhhhHHHH
Q 015432 125 ESLQIIGDLFGLNQSTVSQVTWRFV 149 (407)
Q Consensus 125 ~s~~~la~~Fgis~sTvsr~i~~~~ 149 (407)
.++..+|...||+.||+||+-+...
T Consensus 24 ~gq~~vA~~iGV~~StISR~k~~~~ 48 (97)
T 1xwr_A 24 LGTEKTAEAVGVDKSQISRWKRDWI 48 (97)
T ss_dssp HCHHHHHHHHTCCTTTHHHHHHHHH
T ss_pred HhHHHHHHHhCCCHHHHHHHHhhhH
Confidence 4567899999999999999655443
No 79
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=53.96 E-value=1.9 Score=33.90 Aligned_cols=27 Identities=19% Similarity=0.211 Sum_probs=24.2
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
+.++..++..+|++++||++.+.....
T Consensus 45 ~~s~~ela~~l~is~stvsr~l~~Le~ 71 (119)
T 2lkp_A 45 PLPVTDLAEAIGMEQSAVSHQLRVLRN 71 (119)
T ss_dssp CCCHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 678999999999999999999877665
No 80
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=53.39 E-value=7.8 Score=31.16 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=22.7
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
+.+..+||..++++++||++.+.+...
T Consensus 54 ~~t~~ela~~l~~~~~tvs~~l~~Le~ 80 (148)
T 3nrv_A 54 DCSVQKISDILGLDKAAVSRTVKKLEE 80 (148)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 567889999999999999998766544
No 81
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=53.30 E-value=1.9 Score=32.33 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=22.7
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
+.+..+|+..+|+|++||++.+.....
T Consensus 38 ~~s~~ela~~l~is~~tvs~~l~~L~~ 64 (99)
T 3cuo_A 38 GTSAGELTRITGLSASATSQHLARMRD 64 (99)
T ss_dssp SEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 467889999999999999998876543
No 82
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=53.24 E-value=1.5 Score=31.09 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=19.7
Q ss_pred CCcchhhhcccccccccchhhh
Q 015432 124 GESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i 145 (407)
..++..+|..+||+++|||+++
T Consensus 13 ~~sq~~~A~~Lgvsq~aVS~~~ 34 (65)
T 2cw1_A 13 DKNQEYAARALGLSQKLIEEVL 34 (65)
T ss_dssp TSCHHHHHHHSSSCHHHHHHHH
T ss_pred HcCHHHHHHHhCCCHHHHHHHH
Confidence 3499999999999999999976
No 83
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=52.99 E-value=12 Score=29.97 Aligned_cols=26 Identities=27% Similarity=0.366 Sum_probs=21.8
Q ss_pred CCcchhhhcccccccccchhhhHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFV 149 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~ 149 (407)
+.+..+|+..++++++|+++++.+..
T Consensus 45 ~~t~~eLa~~l~~~~~tvs~~l~~Le 70 (145)
T 3g3z_A 45 SRTQKHIGEKWSLPKQTVSGVCKTLA 70 (145)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 56788999999999999998776543
No 84
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=51.78 E-value=17 Score=29.71 Aligned_cols=26 Identities=4% Similarity=0.009 Sum_probs=21.9
Q ss_pred CCcchhhhcccccccccchhhhHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFV 149 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~ 149 (407)
+.+..+||..++++++||++++.+..
T Consensus 60 ~~t~~eLa~~l~~~~~tvs~~l~~Le 85 (162)
T 3k0l_A 60 NLSNAKLAERSFIKPQSANKILQDLL 85 (162)
T ss_dssp TCCHHHHHHHHTSCGGGHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 56788999999999999998776543
No 85
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=51.71 E-value=12 Score=30.44 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=22.0
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
+.+..+|+..++++++||++++.+...
T Consensus 63 ~~t~~ela~~l~is~~tvs~~l~~Le~ 89 (162)
T 2fa5_A 63 GSSASEVSDRTAMDKVAVSRAVARLLE 89 (162)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566789999999999999987765443
No 86
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=51.66 E-value=2.8 Score=32.27 Aligned_cols=28 Identities=29% Similarity=0.203 Sum_probs=23.7
Q ss_pred CCCcchhhhcccccccccchhhhHHHHH
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
.+.+..+|+..+|+|++||++.+.....
T Consensus 38 ~~~~~~ela~~l~is~stvs~~L~~L~~ 65 (106)
T 1r1u_A 38 SEASVGHISHQLNLSQSNVSHQLKLLKS 65 (106)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4468899999999999999998876654
No 87
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=51.48 E-value=1.9 Score=29.79 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=19.5
Q ss_pred CCcchhhhcccccccccchhhh
Q 015432 124 GESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i 145 (407)
+.++..+|..+|||++||+++.
T Consensus 10 ~~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 10 FGTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HSSHHHHHHHHTCCHHHHHHCC
T ss_pred cCCHHHHHHHhCCCHHHHHHHH
Confidence 4578999999999999999975
No 88
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=51.34 E-value=8.9 Score=30.32 Aligned_cols=28 Identities=14% Similarity=0.042 Sum_probs=23.3
Q ss_pred CCCcchhhhcccccccccchhhhHHHHH
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
.+.+..+|+..++++++|+++++.+...
T Consensus 52 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 79 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQPQVVKAVKILSQ 79 (127)
T ss_dssp SEEEHHHHHHHSSSHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3567899999999999999998776544
No 89
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=50.47 E-value=2.5 Score=31.96 Aligned_cols=27 Identities=22% Similarity=0.065 Sum_probs=22.7
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
+.+..+|+..+|+|++||++.+....+
T Consensus 36 ~~~~~ela~~l~is~~tvs~~L~~L~~ 62 (98)
T 3jth_A 36 ELSVGELCAKLQLSQSALSQHLAWLRR 62 (98)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 457899999999999999998766544
No 90
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=50.39 E-value=3.2 Score=33.39 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=28.5
Q ss_pred CChhc-ceeeEEEeccCCCcchhhhcccccccccchhhhHHHH
Q 015432 108 LSPND-MVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFV 149 (407)
Q Consensus 108 l~~~~-ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~ 149 (407)
++..+ .++..|. ..+.+...|+..+|++++||++++.+..
T Consensus 35 l~~~~~~iL~~l~--~~~~~~~ela~~l~~s~~tvs~~l~~Le 75 (146)
T 2gxg_A 35 LSYLDFLVLRATS--DGPKTMAYLANRYFVTQSAITASVDKLE 75 (146)
T ss_dssp CCHHHHHHHHHHT--TSCBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh--cCCcCHHHHHHHhCCCchhHHHHHHHHH
Confidence 44433 3444443 5678899999999999999998765543
No 91
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=50.22 E-value=3.4 Score=29.78 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.5
Q ss_pred CCCcchhhhcccccccccchhhhH
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVTW 146 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i~ 146 (407)
.| ++..+|...|||++||+++.+
T Consensus 11 ~g-sq~~lA~~lgvs~~~is~~e~ 33 (79)
T 3bd1_A 11 LG-SVSALAASLGVRQSAISNWRA 33 (79)
T ss_dssp HS-SHHHHHHHHTCCHHHHHHHHH
T ss_pred hC-CHHHHHHHHCCCHHHHHHHHH
Confidence 37 899999999999999999764
No 92
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=50.21 E-value=1.6 Score=38.80 Aligned_cols=83 Identities=13% Similarity=0.033 Sum_probs=50.8
Q ss_pred CChhHHHhhcCCCHHHHHHHHHHhhhhhhhhcCCCcCCCCCCCChhcceeeEEEecc--------------CCCcchhhh
Q 015432 66 KTSKNFESVFKISRKTFDYICSLVKEDLAARQSNFSFSNGKPLSPNDMVAIALRRLS--------------SGESLQIIG 131 (407)
Q Consensus 66 ~~d~~F~~~frmsr~tF~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~ql~i~L~~La--------------~g~s~~~la 131 (407)
.+-+.|...+.-.+.....++..+...+....... ..-...+++++|+-+|..|+ -..+..+||
T Consensus 123 i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~--~~l~~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt~~~lA 200 (243)
T 3la7_A 123 APIEQVEQALKENPELSMLMLRGLSSRILQTEMMI--ETLAHRDMGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIA 200 (243)
T ss_dssp EEHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH--HHHHCSSHHHHHHHHHHHHHHHHEEECSSSEEECSCCCHHHHH
T ss_pred EcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHHHhCCCCCCCeEEeccCCHHHHH
Confidence 34456666666555554445544443332211000 00123678899988887764 235678999
Q ss_pred cccccccccchhhhHHHHH
Q 015432 132 DLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 132 ~~Fgis~sTvsr~i~~~~~ 150 (407)
...|+++.||+|++.++.+
T Consensus 201 ~~lG~sr~tvsR~l~~L~~ 219 (243)
T 3la7_A 201 EAIGSTRVTVTRLLGDLRE 219 (243)
T ss_dssp HHHTCCHHHHHHHHHHHHH
T ss_pred HHHCCcHHHHHHHHHHHHH
Confidence 9999999999998766543
No 93
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=49.77 E-value=3.4 Score=35.66 Aligned_cols=38 Identities=16% Similarity=0.033 Sum_probs=0.0
Q ss_pred eeeEEEeccCCCcchhhhcccccccccchhhhHHHHHH
Q 015432 114 VAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVES 151 (407)
Q Consensus 114 l~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~~a 151 (407)
+--...++..|.+...||..+|||.+|+++++...-..
T Consensus 148 v~~i~~l~~~G~s~~~Ia~~l~vs~~T~yr~l~~~~~~ 185 (193)
T 3plo_X 148 WEQAGRLLAQGIPRKQVALIYDVALSTLYKKHPAKRAH 185 (193)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHhhhHHh
Confidence 33344456689999999999999999999988664443
No 94
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=48.85 E-value=16 Score=29.64 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=23.2
Q ss_pred CCCcchhhhcccccccccchhhhHHHHH
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
.+.+..+|+..++++++||++++.+...
T Consensus 61 ~~~~~~ela~~l~i~~~tvs~~l~~Le~ 88 (160)
T 3boq_A 61 DGLSMGKLSGALKVTNGNVSGLVNRLIK 88 (160)
T ss_dssp TCEEHHHHHHHCSSCCSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 4677899999999999999998766544
No 95
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=48.77 E-value=3.3 Score=28.18 Aligned_cols=24 Identities=13% Similarity=0.218 Sum_probs=21.2
Q ss_pred cCCCcchhhhcccccccccchhhh
Q 015432 122 SSGESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 122 a~g~s~~~la~~Fgis~sTvsr~i 145 (407)
..|.++.++|...|||++|++++.
T Consensus 12 ~~g~s~~~lA~~~gis~~~i~~~e 35 (66)
T 2xi8_A 12 KKKISQSELAALLEVSRQTINGIE 35 (66)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 358889999999999999999875
No 96
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=48.74 E-value=15 Score=28.86 Aligned_cols=27 Identities=15% Similarity=0.346 Sum_probs=22.2
Q ss_pred CCCcchhhhcccccccccchhhhHHHH
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVTWRFV 149 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i~~~~ 149 (407)
.+.+..+|+..++++++||++++.+..
T Consensus 42 ~~~~~~ela~~l~~s~~tvs~~l~~L~ 68 (138)
T 3bpv_A 42 PGIKQDELATFFHVDKGTIARTLRRLE 68 (138)
T ss_dssp TTCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 356788999999999999998775543
No 97
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=48.60 E-value=11 Score=30.04 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=21.5
Q ss_pred cchhhhcccccccccchhhhHHHHH
Q 015432 126 SLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 126 s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
+..+|+..++++++||++.+.+...
T Consensus 52 ~~~~la~~l~~~~~tvs~~l~~Le~ 76 (144)
T 3f3x_A 52 SMVYLANRYFVTQSAITAAVDKLEA 76 (144)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCChhHHHHHHHHHHH
Confidence 7899999999999999998766544
No 98
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=48.25 E-value=15 Score=29.31 Aligned_cols=28 Identities=14% Similarity=0.098 Sum_probs=22.9
Q ss_pred CCCcchhhhcccccccccchhhhHHHHH
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
.+.+..+|+..++++++||++++.+...
T Consensus 55 ~~~t~~ela~~l~~~~~tvs~~l~~Le~ 82 (150)
T 2rdp_A 55 GDLTVGELSNKMYLACSTTTDLVDRMER 82 (150)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCchhHHHHHHHHHH
Confidence 3568899999999999999987765443
No 99
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=48.20 E-value=3.7 Score=29.70 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=21.1
Q ss_pred cCCCcchhhhcccccccccchhhh
Q 015432 122 SSGESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 122 a~g~s~~~la~~Fgis~sTvsr~i 145 (407)
..|.++..||...|||++|++++.
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~~ 43 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANAL 43 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 358889999999999999999874
No 100
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=48.18 E-value=3.5 Score=29.75 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.6
Q ss_pred CCCcchhhhcccccccccchhhh
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i 145 (407)
.|.++..+|...|||++|++++.
T Consensus 24 ~gltq~~lA~~~gvs~~~is~~e 46 (80)
T 3kz3_A 24 LGLSYESVADKMGMGQSAVAALF 46 (80)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHH
Confidence 37889999999999999999875
No 101
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=48.06 E-value=13 Score=29.97 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=22.4
Q ss_pred CCCcchhhhcccccccccchhhhHHHH
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVTWRFV 149 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i~~~~ 149 (407)
.+.+..+|+..++++++||++++.+..
T Consensus 54 ~~~~~~eLa~~l~~~~~~vs~~l~~L~ 80 (149)
T 4hbl_A 54 NPQTLNSIGRHLDLSSNTLTPMLKRLE 80 (149)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 356789999999999999998776543
No 102
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=47.79 E-value=4.1 Score=34.45 Aligned_cols=42 Identities=10% Similarity=0.226 Sum_probs=0.6
Q ss_pred CChhcceeeEEEecc---CCCcchhhhcccccccccchhhhHHHH
Q 015432 108 LSPNDMVAIALRRLS---SGESLQIIGDLFGLNQSTVSQVTWRFV 149 (407)
Q Consensus 108 l~~~~ql~i~L~~La---~g~s~~~la~~Fgis~sTvsr~i~~~~ 149 (407)
.+++++++-+|..+. ...+..+||...|+++.|++|++.+.+
T Consensus 149 ~~~~~Rl~~~L~~~~~~~~~~t~~~iA~~lG~sretlsR~l~~l~ 193 (194)
T 3dn7_A 149 YSKEEQYHNFSSRFPEFIQRVPQYLLASYLGFTPEYLSEIRKKYI 193 (194)
T ss_dssp C--------------------------------------------
T ss_pred CCHHHHHHHHHHHChHHHHHCCHHHHHHHhCCCHHHHHHHHHhhc
Confidence 577888888887654 346789999999999999999987653
No 103
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=47.74 E-value=13 Score=29.31 Aligned_cols=27 Identities=7% Similarity=0.006 Sum_probs=22.1
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
+.+..+|+..++++++||++++.+...
T Consensus 50 ~~t~~ela~~l~~s~~~vs~~l~~Le~ 76 (142)
T 2fbi_A 50 EMESYQLANQACILRPSMTGVLARLER 76 (142)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 456789999999999999998766544
No 104
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=47.63 E-value=3.9 Score=38.03 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=0.0
Q ss_pred CcchhhhcccccccccchhhhHH
Q 015432 125 ESLQIIGDLFGLNQSTVSQVTWR 147 (407)
Q Consensus 125 ~s~~~la~~Fgis~sTvsr~i~~ 147 (407)
.+..+||..+|||.+||||+++.
T Consensus 6 ~ti~diA~~agVS~~TVSrvln~ 28 (332)
T 2o20_A 6 TTIYDVARVAGVSMATVSRVVNG 28 (332)
T ss_dssp -----------------------
T ss_pred CcHHHHHHHHCCCHHHHHHHHcC
Confidence 35789999999999999999875
No 105
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=47.53 E-value=3.9 Score=37.98 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=0.0
Q ss_pred cchhhhcccccccccchhhhHH
Q 015432 126 SLQIIGDLFGLNQSTVSQVTWR 147 (407)
Q Consensus 126 s~~~la~~Fgis~sTvsr~i~~ 147 (407)
+..+||..+|||.+||||+++.
T Consensus 4 ti~diA~~agVS~~TVSrvln~ 25 (330)
T 3ctp_A 4 NIREIAKRAGISIATVSRHLNN 25 (330)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHcC
Confidence 5689999999999999999875
No 106
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=47.45 E-value=3.1 Score=33.46 Aligned_cols=29 Identities=7% Similarity=0.132 Sum_probs=23.8
Q ss_pred cCCCcchhhhcccccccccchhhhHHHHH
Q 015432 122 SSGESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 122 a~g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
..+.+..+|+..+|++++||++++.+...
T Consensus 50 ~~~~t~~~la~~l~~s~~~vs~~l~~L~~ 78 (146)
T 2fbh_A 50 RDSPTQRELAQSVGVEGPTLARLLDGLES 78 (146)
T ss_dssp SSCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 45678999999999999999987765443
No 107
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=47.16 E-value=5.5 Score=29.19 Aligned_cols=23 Identities=9% Similarity=0.032 Sum_probs=18.9
Q ss_pred CCcchhhhcccccccccchhhhH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTW 146 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~ 146 (407)
..+..+|+..|+||.+||.+.+.
T Consensus 16 ~vsv~eLa~~l~VS~~TIRrdL~ 38 (78)
T 1xn7_A 16 RMEAAQISQTLNTPQPMINAMLQ 38 (78)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHH
Confidence 35678999999999999987653
No 108
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=46.79 E-value=1.2 Score=33.76 Aligned_cols=26 Identities=23% Similarity=0.153 Sum_probs=21.9
Q ss_pred CcchhhhcccccccccchhhhHHHHH
Q 015432 125 ESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 125 ~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
.+..+|+..++++++||++++.+...
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~ 56 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEE 56 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56789999999999999998766544
No 109
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=46.77 E-value=3.9 Score=29.85 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.1
Q ss_pred CCCcchhhhcccccccccchhhhH
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVTW 146 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i~ 146 (407)
.|.++.++|...|||++|++++.+
T Consensus 30 ~glsq~elA~~~gis~~~is~~e~ 53 (83)
T 2a6c_A 30 SGLTQFKAAELLGVTQPRVSDLMR 53 (83)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 378899999999999999998753
No 110
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=46.54 E-value=4.2 Score=38.26 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=0.0
Q ss_pred cchhhhcccccccccchhhhHH
Q 015432 126 SLQIIGDLFGLNQSTVSQVTWR 147 (407)
Q Consensus 126 s~~~la~~Fgis~sTvsr~i~~ 147 (407)
+..+||..+|||.+||||+++.
T Consensus 10 ti~dvA~~aGVS~~TVSrvLn~ 31 (348)
T 3bil_A 10 TLKDVARQAGVSIATASRALAD 31 (348)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHCC
Confidence 5789999999999999999875
No 111
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=46.40 E-value=3.8 Score=28.39 Aligned_cols=23 Identities=9% Similarity=0.135 Sum_probs=20.6
Q ss_pred CCCcchhhhcccccccccchhhh
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i 145 (407)
.|.++.++|...|||++|++++.
T Consensus 15 ~glsq~~lA~~~gis~~~i~~~e 37 (71)
T 1zug_A 15 LKMTQTELATKAGVKQQSIQLIE 37 (71)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHH
Confidence 57889999999999999999875
No 112
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=46.39 E-value=4.1 Score=38.04 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=18.9
Q ss_pred cchhhhcccccccccchhhhH
Q 015432 126 SLQIIGDLFGLNQSTVSQVTW 146 (407)
Q Consensus 126 s~~~la~~Fgis~sTvsr~i~ 146 (407)
+..+||..+|||.+||||+++
T Consensus 2 ti~diA~~agVS~~TVSrvLn 22 (340)
T 1qpz_A 2 TIKDVAKRANVSTTTVSHVIN 22 (340)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHc
Confidence 467999999999999999876
No 113
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=46.24 E-value=5.5 Score=29.00 Aligned_cols=25 Identities=8% Similarity=0.278 Sum_probs=20.8
Q ss_pred CCcchhhhcccccccccchhhhHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRF 148 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~ 148 (407)
+.+..+||..+||+++||.+.+.+.
T Consensus 31 ~~t~~eLA~~Lgvs~~tV~~~L~~L 55 (77)
T 1qgp_A 31 ATTAHDLSGKLGTPKKEINRVLYSL 55 (77)
T ss_dssp CEEHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4577899999999999998876554
No 114
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=46.02 E-value=4.3 Score=37.88 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=0.0
Q ss_pred CcchhhhcccccccccchhhhHH
Q 015432 125 ESLQIIGDLFGLNQSTVSQVTWR 147 (407)
Q Consensus 125 ~s~~~la~~Fgis~sTvsr~i~~ 147 (407)
.+..+||..+|||.+||||+++.
T Consensus 5 ~ti~diA~~agVS~~TVSr~Ln~ 27 (339)
T 3h5o_A 5 VTMHDVAKAAGVSAITVSRVLNQ 27 (339)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 46789999999999999999864
No 115
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=45.96 E-value=3.9 Score=28.14 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=21.0
Q ss_pred cCCCcchhhhcccccccccchhhh
Q 015432 122 SSGESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 122 a~g~s~~~la~~Fgis~sTvsr~i 145 (407)
..|.++.++|...|||++|++++.
T Consensus 12 ~~glsq~~lA~~~gis~~~i~~~e 35 (69)
T 1r69_A 12 QLGLNQAELAQKVGTTQQSIEQLE 35 (69)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 357889999999999999999875
No 116
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=45.90 E-value=18 Score=28.42 Aligned_cols=27 Identities=7% Similarity=0.090 Sum_probs=22.4
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
+.+..+|+..++++++||++++.+...
T Consensus 48 ~~~~~~la~~l~~~~~tvs~~l~~L~~ 74 (138)
T 1jgs_A 48 CITPVELKKVLSVDLGALTRMLDRLVC 74 (138)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCChHHHHHHHHHHHH
Confidence 567889999999999999998766544
No 117
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=45.72 E-value=4.4 Score=38.09 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=0.0
Q ss_pred cchhhhcccccccccchhhhHH
Q 015432 126 SLQIIGDLFGLNQSTVSQVTWR 147 (407)
Q Consensus 126 s~~~la~~Fgis~sTvsr~i~~ 147 (407)
+..+||..+|||.+||||+++.
T Consensus 5 ti~diA~~aGVS~~TVSrvLn~ 26 (349)
T 1jye_A 5 TLYDVAEYAGVSYQTVSRVVNQ 26 (349)
T ss_dssp ----------------------
T ss_pred CHHHHHHHhCCCHHHHHHHHcC
Confidence 5689999999999999999875
No 118
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=45.70 E-value=4 Score=28.73 Aligned_cols=42 Identities=24% Similarity=0.227 Sum_probs=30.2
Q ss_pred cCCCcchhhhcccccccccchhhhHHHHHHHHHhccccccCCChhhHHHHHHHHH
Q 015432 122 SSGESLQIIGDLFGLNQSTVSQVTWRFVESMEERGLHHLQWPSKETEMEDIKSKF 176 (407)
Q Consensus 122 a~g~s~~~la~~Fgis~sTvsr~i~~~~~al~~~~~~~i~~P~~~~~~~~i~~~f 176 (407)
..|.++.++|...|||++|++++.+. . .-|+.+ .+..++..|
T Consensus 19 ~~glsq~~lA~~~gis~~~is~~e~g---------~---~~~~~~-~l~~ia~~l 60 (73)
T 3omt_A 19 EKGKTNLWLTETLDKNKTTVSKWCTN---------D---VQPSLE-TLFDIAEAL 60 (73)
T ss_dssp HHTCCHHHHHHHTTCCHHHHHHHHTT---------S---SCCCHH-HHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC---------C---CCCCHH-HHHHHHHHH
Confidence 35889999999999999999987531 1 235555 566666554
No 119
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=45.67 E-value=4.4 Score=37.75 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=0.0
Q ss_pred cchhhhcccccccccchhhhHH
Q 015432 126 SLQIIGDLFGLNQSTVSQVTWR 147 (407)
Q Consensus 126 s~~~la~~Fgis~sTvsr~i~~ 147 (407)
+..+||...|||.+||||+++.
T Consensus 5 ti~diA~~agVS~~TVSrvln~ 26 (338)
T 3dbi_A 5 TMLEVAKRAGVSKATVSRVLSG 26 (338)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCcCHHHHHHHHCC
Confidence 4689999999999999999875
No 120
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=45.64 E-value=5.6 Score=29.87 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=21.9
Q ss_pred cCCCcchhhhcccccccccchhhhHHH
Q 015432 122 SSGESLQIIGDLFGLNQSTVSQVTWRF 148 (407)
Q Consensus 122 a~g~s~~~la~~Fgis~sTvsr~i~~~ 148 (407)
..+.+..+|+..+|+|++||++.+...
T Consensus 41 ~~~~~~~eLa~~l~is~~tv~~~L~~L 67 (96)
T 1y0u_A 41 DKGRSEEEIMQTLSLSKKQLDYHLKVL 67 (96)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 345678899999999999999876543
No 121
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=45.60 E-value=15 Score=29.09 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=21.9
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
+.+..+|+..++++++||++++.+...
T Consensus 51 ~~~~~ela~~l~~~~~tvs~~l~~L~~ 77 (142)
T 2bv6_A 51 PVNVKKVVTELALDTGTVSPLLKRMEQ 77 (142)
T ss_dssp EEEHHHHHHHTTCCTTTHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 457789999999999999987755443
No 122
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=45.55 E-value=2.3 Score=37.40 Aligned_cols=65 Identities=17% Similarity=0.160 Sum_probs=43.6
Q ss_pred CCCChhcceeeEEEeccC----------CCcchhhhcccccccccchhhhHHHHHH-HHHhccccccCCChhhHHHHH
Q 015432 106 KPLSPNDMVAIALRRLSS----------GESLQIIGDLFGLNQSTVSQVTWRFVES-MEERGLHHLQWPSKETEMEDI 172 (407)
Q Consensus 106 ~~l~~~~ql~i~L~~La~----------g~s~~~la~~Fgis~sTvsr~i~~~~~a-l~~~~~~~i~~P~~~~~~~~i 172 (407)
...+++++|+-+|..++. ..+...||...|+++.||+|++.++.+. | ..-...|...+.+ .+.++
T Consensus 150 ~~~~~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~gi-~~~~~~i~I~d~~-~L~~~ 225 (237)
T 3fx3_A 150 KAQTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRLGMKPESLSRAFSRLKAAGV-TVKRNHAEIEDIA-LLRDY 225 (237)
T ss_dssp CCCCHHHHHHHHHHHHCCC-----EEECCSCTHHHHHHTTCCHHHHHHHHHHHGGGTE-ECCTTEEEESCHH-HHHHH
T ss_pred hcCCHHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHCCe-EeeCCEEEEcCHH-HHHHH
Confidence 457889999999988753 2346789999999999999988775432 2 2222334444444 44433
No 123
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=45.50 E-value=6.7 Score=28.94 Aligned_cols=24 Identities=8% Similarity=0.261 Sum_probs=19.6
Q ss_pred CCcchhhhcccccccccchhhhHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWR 147 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~ 147 (407)
..+...||..+|||++||.+.+.+
T Consensus 27 ~~t~~eLA~~Lgvsr~tV~~~L~~ 50 (81)
T 1qbj_A 27 ATTAHDLSGKLGTPKKEINRVLYS 50 (81)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHH
Confidence 356789999999999998876544
No 124
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=45.49 E-value=7.8 Score=29.79 Aligned_cols=27 Identities=11% Similarity=0.049 Sum_probs=21.8
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
..+...||..+|||++||++.+.....
T Consensus 33 ~~s~~eLa~~lgvs~~tV~~~L~~L~~ 59 (110)
T 1q1h_A 33 EMTDEEIANQLNIKVNDVRKKLNLLEE 59 (110)
T ss_dssp CBCHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 356789999999999999987765443
No 125
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=45.47 E-value=15 Score=29.30 Aligned_cols=28 Identities=14% Similarity=0.011 Sum_probs=23.2
Q ss_pred CCCcchhhhcccccccccchhhhHHHHH
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
.+.+..+|+..++++++||++++.+...
T Consensus 50 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 77 (143)
T 3oop_A 50 EPISQKEIALWTKKDTPTVNRIVDVLLR 77 (143)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 4678899999999999999988766543
No 126
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=45.43 E-value=4.9 Score=32.20 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=22.7
Q ss_pred eccCCCcchhhhcccccccccchhhh
Q 015432 120 RLSSGESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 120 ~La~g~s~~~la~~Fgis~sTvsr~i 145 (407)
+-..|.++..+|..+|||++|+++|-
T Consensus 80 R~~~glsq~~la~~~g~s~~~i~~~E 105 (133)
T 3o9x_A 80 RKKLSLTQKEASEIFGGGVNAFSRYE 105 (133)
T ss_dssp HHHTTCCHHHHHHHHCSCTTHHHHHH
T ss_pred HHHcCCCHHHHHHHHCCCHHHHHHHH
Confidence 34569999999999999999999864
No 127
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=45.42 E-value=4.8 Score=35.77 Aligned_cols=46 Identities=15% Similarity=0.305 Sum_probs=38.1
Q ss_pred CCCChhcceeeEEEeccCCCcchhhhcccccccccchhhhHHHHHHHH
Q 015432 106 KPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESME 153 (407)
Q Consensus 106 ~~l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~~al~ 153 (407)
..++..++-.+.| ++.|.++.+||...|||.+||...+.+...-|.
T Consensus 172 ~~Lt~~e~~vl~~--~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 172 AWLDPKEATYLRW--IAVGKTMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCHHHHHHHHH--HTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 4588887766555 579999999999999999999998887766654
No 128
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=45.39 E-value=5.1 Score=32.15 Aligned_cols=25 Identities=12% Similarity=0.073 Sum_probs=21.4
Q ss_pred CCCcchhhhcccccccccchhhhHH
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVTWR 147 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i~~ 147 (407)
.+.+..+|+..+|++++||++++.+
T Consensus 40 ~~~t~~ela~~l~~~~stvs~~l~~ 64 (152)
T 1ku9_A 40 KPLTISDIMEELKISKGNVSMSLKK 64 (152)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4678899999999999999987654
No 129
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=45.39 E-value=2.9 Score=37.93 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=39.4
Q ss_pred CCCChhcceeeEEEeccCCCcchhhhcccccccccchhhhHHHHHHHH
Q 015432 106 KPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESME 153 (407)
Q Consensus 106 ~~l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~~al~ 153 (407)
..+|..++-++.|+ ..|.++..||...|+|.+||...+.+....|.
T Consensus 196 ~~L~~~erevl~L~--~~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL~ 241 (258)
T 3clo_A 196 NILSEREKEILRCI--RKGLSSKEIAATLYISVNTVNRHRQNILEKLS 241 (258)
T ss_dssp TSSCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 45899888888885 49999999999999999999998887776664
No 130
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=45.18 E-value=6.4 Score=35.09 Aligned_cols=46 Identities=15% Similarity=0.219 Sum_probs=37.3
Q ss_pred CCCCChhcceeeEEEeccCCCcchhhhcccccccccchhhhHHHHHHH
Q 015432 105 GKPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESM 152 (407)
Q Consensus 105 ~~~l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~~al 152 (407)
...++..++-.+.| ++.|.+..+||...|||..||..++.+...-|
T Consensus 173 ~~~Lt~re~~vl~~--~~~G~s~~eIa~~l~is~~tV~~~~~~~~~kl 218 (237)
T 3szt_A 173 NVRLTARETEMLKW--TAVGKTYGEIGLILSIDQRTVKFHIVNAMRKL 218 (237)
T ss_dssp GCCCCHHHHHHHHH--HHTTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHH--HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 35688877765554 68999999999999999999999887765554
No 131
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=45.18 E-value=7 Score=30.92 Aligned_cols=27 Identities=15% Similarity=0.144 Sum_probs=22.6
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
+.+..+|+..++++++||++++.+...
T Consensus 47 ~~~~~ela~~l~~~~~tvs~~l~~L~~ 73 (139)
T 3bja_A 47 KVSMSKLIENMGCVPSNMTTMIQRMKR 73 (139)
T ss_dssp SEEHHHHHHHCSSCCTTHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 567899999999999999998766444
No 132
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=45.16 E-value=14 Score=29.30 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=22.3
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
+.+...|+..++++++||++++.+...
T Consensus 47 ~~~~~~la~~l~~s~~tvs~~l~~L~~ 73 (145)
T 2a61_A 47 PKRPGELSVLLGVAKSTVTGLVKRLEA 73 (145)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCchhHHHHHHHHHH
Confidence 567889999999999999987765443
No 133
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=45.09 E-value=1.9 Score=37.36 Aligned_cols=64 Identities=14% Similarity=0.153 Sum_probs=44.5
Q ss_pred CChhcceeeEEEeccC-------CCcchhhhcccccccccchhhhHHHHHH-HHHhccccccCCChhhHHHHH
Q 015432 108 LSPNDMVAIALRRLSS-------GESLQIIGDLFGLNQSTVSQVTWRFVES-MEERGLHHLQWPSKETEMEDI 172 (407)
Q Consensus 108 l~~~~ql~i~L~~La~-------g~s~~~la~~Fgis~sTvsr~i~~~~~a-l~~~~~~~i~~P~~~~~~~~i 172 (407)
.+++++++-+|..+.. ..+..+||...|++++|++|++.++.+. +.+.-...|...+.+ .++++
T Consensus 146 ~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~~-~L~~~ 217 (220)
T 3dv8_A 146 KSLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQVEGLVKLSRGKITILDSK-RLETL 217 (220)
T ss_dssp SCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEESCHH-HHHHH
T ss_pred CCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCCCEEEEeCHH-HHHHH
Confidence 6788899888887764 5678999999999999999988776542 222223344445544 44443
No 134
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=45.02 E-value=4.4 Score=37.36 Aligned_cols=73 Identities=11% Similarity=0.093 Sum_probs=51.3
Q ss_pred CChhcceeeEEEeccCCCcchhhhcccccccccchhhhHHHHHHHHHhcccc-ccCCChhhHHHHHHHHHHhhhCC
Q 015432 108 LSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESMEERGLHH-LQWPSKETEMEDIKSKFEKIRGF 182 (407)
Q Consensus 108 l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~~al~~~~~~~-i~~P~~~~~~~~i~~~f~~~~~f 182 (407)
+|..++-++.|+++ .|.++..+|...|++.+||...+.+....+...+... +..-+.. ....+...+-+..|+
T Consensus 112 Lp~~~R~v~~L~~~-eg~s~~EIA~~lgis~~tVks~l~rA~~~Lr~~l~~rILvVdD~~-~~~~~l~~~L~~~g~ 185 (286)
T 3n0r_A 112 IAPRSRQAFLLTAL-EGFTPTEAAQILDCDFGEVERLIGDAQAEIDAELATEVLIIEDEP-VIAADIEALVRELGH 185 (286)
T ss_dssp HSCHHHHHHHHHHT-TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCCCEEEEECCSH-HHHHHHHHHHHHTTC
T ss_pred CCHHHeeEEEEEee-CCCCHHHHHHHhCcCHHHHHHHHHHHHhhhhccCCCcEEEEcCCH-HHHHHHHHHhhccCc
Confidence 67777777777776 5899999999999999999998888888777655433 3233333 455555555444443
No 135
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=44.94 E-value=4.5 Score=37.71 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=0.0
Q ss_pred CcchhhhcccccccccchhhhHH
Q 015432 125 ESLQIIGDLFGLNQSTVSQVTWR 147 (407)
Q Consensus 125 ~s~~~la~~Fgis~sTvsr~i~~ 147 (407)
.+..+||..+|||.+||||+++.
T Consensus 7 ~ti~diA~~agVS~~TVSr~Ln~ 29 (333)
T 3jvd_A 7 SSLKEVAELAGVGYATASRALSG 29 (333)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 35789999999999999999874
No 136
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=44.83 E-value=4 Score=37.94 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=19.5
Q ss_pred cchhhhcccccccccchhhhHH
Q 015432 126 SLQIIGDLFGLNQSTVSQVTWR 147 (407)
Q Consensus 126 s~~~la~~Fgis~sTvsr~i~~ 147 (407)
+..+||..+|||.+||||+++.
T Consensus 4 ti~dvA~~agVS~~TVSrvln~ 25 (332)
T 2hsg_A 4 TIYDVAREASVSMATVSRVVNG 25 (332)
T ss_dssp CHHHHHHHTTSCHHHHHHHHTT
T ss_pred CHHHHHHHhCCCHHHHHHHHcC
Confidence 5789999999999999998753
No 137
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=44.70 E-value=17 Score=29.57 Aligned_cols=26 Identities=8% Similarity=0.134 Sum_probs=21.0
Q ss_pred CCcchhhhcccccccccchhhhHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFV 149 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~ 149 (407)
+.+..+||..++++++|+++++.+..
T Consensus 52 ~~t~~eLa~~l~~~~~tvsr~v~~Le 77 (148)
T 4fx0_A 52 DLTMSELAARIGVERTTLTRNLEVMR 77 (148)
T ss_dssp --CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCChhhHHHHHHHHH
Confidence 35788999999999999999876643
No 138
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=44.67 E-value=1.9 Score=37.35 Aligned_cols=41 Identities=12% Similarity=0.187 Sum_probs=34.7
Q ss_pred CCCChhcceeeEEEeccCC--CcchhhhcccccccccchhhhH
Q 015432 106 KPLSPNDMVAIALRRLSSG--ESLQIIGDLFGLNQSTVSQVTW 146 (407)
Q Consensus 106 ~~l~~~~ql~i~L~~La~g--~s~~~la~~Fgis~sTvsr~i~ 146 (407)
+++|..++=--.++.|.+| .++..+|.++|||++.|+|++.
T Consensus 22 rplS~yErg~~y~r~L~~g~~~~Q~~lA~~~giS~a~VSR~L~ 64 (189)
T 3mky_B 22 RPTSAYERGQRYASRLQNEFAGNISALADAENISRKIITRCIN 64 (189)
T ss_dssp -CCCHHHHHHHHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCcccCHHHHHHHHCCCHHHHHHHHH
Confidence 5688888777777888777 7899999999999999999874
No 139
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=44.56 E-value=2.3 Score=36.54 Aligned_cols=42 Identities=24% Similarity=0.281 Sum_probs=32.6
Q ss_pred CChhcceeeEEEeccC-------------CCcchhhhcccccccccchhhhHHHH
Q 015432 108 LSPNDMVAIALRRLSS-------------GESLQIIGDLFGLNQSTVSQVTWRFV 149 (407)
Q Consensus 108 l~~~~ql~i~L~~La~-------------g~s~~~la~~Fgis~sTvsr~i~~~~ 149 (407)
.+++++|+-+|..|+. ..+..+||...|+++.|++|++.++.
T Consensus 138 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~ 192 (210)
T 3ryp_A 138 LDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLE 192 (210)
T ss_dssp SCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCcCCCCCceEeccCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 5777888877776653 23568999999999999999876653
No 140
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=44.52 E-value=3.5 Score=42.57 Aligned_cols=49 Identities=12% Similarity=0.288 Sum_probs=41.1
Q ss_pred CCCChhcceeeEEEecc---CCCcchhhhcccccccccchhhhHHHHHHHHH
Q 015432 106 KPLSPNDMVAIALRRLS---SGESLQIIGDLFGLNQSTVSQVTWRFVESMEE 154 (407)
Q Consensus 106 ~~l~~~~ql~i~L~~La---~g~s~~~la~~Fgis~sTvsr~i~~~~~al~~ 154 (407)
..||+.++-.+.|+|+- .|.++..||..||||.+||.++..+....|-.
T Consensus 549 ~~Lp~~er~Vl~Lr~~~~~~e~~s~~EIA~~lgis~~tVk~~~~rAl~kLR~ 600 (613)
T 3iyd_F 549 AGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH 600 (613)
T ss_dssp TSSCHHHHHHHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHHHHHTTTTS
T ss_pred HcCCHHHHHHHHHHhccCCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHHhhC
Confidence 35899999999998863 68899999999999999999988876665544
No 141
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=44.38 E-value=4.7 Score=37.91 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=0.0
Q ss_pred cchhhhcccccccccchhhhHH
Q 015432 126 SLQIIGDLFGLNQSTVSQVTWR 147 (407)
Q Consensus 126 s~~~la~~Fgis~sTvsr~i~~ 147 (407)
+..+||..+|||.+||||+++.
T Consensus 14 ti~diA~~agVS~~TVSr~Ln~ 35 (355)
T 3e3m_A 14 TMRDVAKAAGVSRMTVSRALKK 35 (355)
T ss_dssp ----------------------
T ss_pred cHHHHHHHhCCCHHHHHHHHCC
Confidence 4689999999999999999864
No 142
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=44.34 E-value=11 Score=29.31 Aligned_cols=80 Identities=14% Similarity=0.022 Sum_probs=45.6
Q ss_pred CChhHHHhhcCCCHHHHHHHHHHhhhhhhhhcCCCcCC-CCCCCChhcceeeEEEeccC--CCcchhhhccc---c----
Q 015432 66 KTSKNFESVFKISRKTFDYICSLVKEDLAARQSNFSFS-NGKPLSPNDMVAIALRRLSS--GESLQIIGDLF---G---- 135 (407)
Q Consensus 66 ~~d~~F~~~frmsr~tF~~L~~~l~~~~~~~~~~~~~~-~~~~l~~~~ql~i~L~~La~--g~s~~~la~~F---g---- 135 (407)
.+-.+.-..|++++.|+...+......-..... ...+ +...++.+..- ..+.++.. ..+...|+..+ |
T Consensus 34 ~s~~~ia~~lgis~~Tv~~w~~~~~~~g~~~~~-~~~g~~~~~l~~~~~~-~i~~~~~~~~~~s~~~i~~~l~~~g~~~~ 111 (128)
T 1pdn_C 34 IRPCVISRQLRVSHGCVSKILNRYQETGSIRPG-VIGGSKPRIATPEIEN-RIEEYKRSSPGMFSWEIREKLIREGVCDR 111 (128)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHCCSSCC-CCSCCCCCSSCSTHHH-HHHHTTTTCTTCCHHHHHHHHHHTSSSCS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHhhCCcccc-cCCCCCCCcCCHHHHH-HHHHHHHhCcchHHHHHHHHHHHcCCccc
Confidence 355677788999999998888776543211111 0111 22345543322 22233332 36777888877 6
Q ss_pred ---cccccchhhhHH
Q 015432 136 ---LNQSTVSQVTWR 147 (407)
Q Consensus 136 ---is~sTvsr~i~~ 147 (407)
+|.+||++++.+
T Consensus 112 ~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 112 STAPSVSAISRLVRG 126 (128)
T ss_dssp TTCCCHHHHHHHC--
T ss_pred cCCcCHHHHHHHHHh
Confidence 588999887754
No 143
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=43.89 E-value=5 Score=37.85 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=19.7
Q ss_pred CcchhhhcccccccccchhhhH
Q 015432 125 ESLQIIGDLFGLNQSTVSQVTW 146 (407)
Q Consensus 125 ~s~~~la~~Fgis~sTvsr~i~ 146 (407)
.+..+||...|||.+||||+++
T Consensus 10 ~Ti~diA~~aGVS~~TVSrvLn 31 (366)
T 3h5t_A 10 GTLASIAAKLGISRTTVSNAYN 31 (366)
T ss_dssp THHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHC
Confidence 4578999999999999999885
No 144
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=43.75 E-value=3.6 Score=31.77 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=21.4
Q ss_pred cCCCcchhhhcccccccccchhhh
Q 015432 122 SSGESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 122 a~g~s~~~la~~Fgis~sTvsr~i 145 (407)
..|.++.++|...|||++|++++=
T Consensus 47 ~~glTQ~eLA~~~gvs~~~is~~E 70 (101)
T 4ghj_A 47 NRDLTQSEVAEIAGIARKTVLNAE 70 (101)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHcCCCHHHHHHHH
Confidence 458999999999999999999863
No 145
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=43.47 E-value=11 Score=30.27 Aligned_cols=22 Identities=14% Similarity=0.049 Sum_probs=17.8
Q ss_pred cchhhhcccccccccchhhhHH
Q 015432 126 SLQIIGDLFGLNQSTVSQVTWR 147 (407)
Q Consensus 126 s~~~la~~Fgis~sTvsr~i~~ 147 (407)
+.+.||..||||++||.+.+..
T Consensus 30 se~~La~~~gvSr~tVr~Al~~ 51 (129)
T 2ek5_A 30 STNELAAFHRINPATARNGLTL 51 (129)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 4578999999999999875543
No 146
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=43.45 E-value=4.5 Score=37.82 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.5
Q ss_pred CcchhhhcccccccccchhhhH
Q 015432 125 ESLQIIGDLFGLNQSTVSQVTW 146 (407)
Q Consensus 125 ~s~~~la~~Fgis~sTvsr~i~ 146 (407)
.+..+||..+|||.+||||+++
T Consensus 11 ~ti~diA~~agVS~~TVSr~Ln 32 (344)
T 3kjx_A 11 LTLRDVSEASGVSEMTVSRVLR 32 (344)
T ss_dssp CCHHHHHHHHCCCSHHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHHHc
Confidence 4578999999999999999874
No 147
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=43.09 E-value=3 Score=34.39 Aligned_cols=25 Identities=12% Similarity=0.209 Sum_probs=20.5
Q ss_pred CCcchhhhcccccccccchhhhHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRF 148 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~ 148 (407)
+.+..+||..++++++||++++.+.
T Consensus 46 ~~~~~eLa~~l~~~~~tvs~~v~~L 70 (151)
T 4aik_A 46 EQSQIQLAKAIGIEQPSLVRTLDQL 70 (151)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHHH
Confidence 4556789999999999999876553
No 148
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=43.04 E-value=4.1 Score=36.28 Aligned_cols=46 Identities=24% Similarity=0.419 Sum_probs=37.8
Q ss_pred CCCChhcceeeEEEeccCCCcchhhhcccccccccchhhhHHHHHHHH
Q 015432 106 KPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESME 153 (407)
Q Consensus 106 ~~l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~~al~ 153 (407)
..++..++-.+.| ++.|.++.+||...|||.+||..++.+...-|.
T Consensus 174 ~~Lt~~e~~vl~~--~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 174 QMLSPREMLCLVW--ASKGKTASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp GSCCHHHHHHHHH--HHTTCCHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 4588877766555 679999999999999999999998887766654
No 149
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=43.00 E-value=3.9 Score=30.09 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=20.8
Q ss_pred CCCcchhhhcccccccccchhhh
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i 145 (407)
.|.++.++|...|||++|++++-
T Consensus 26 ~gltq~elA~~~gis~~~is~~E 48 (86)
T 3eus_A 26 AGLTQADLAERLDKPQSFVAKVE 48 (86)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHH
Confidence 48899999999999999999874
No 150
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=42.96 E-value=4.8 Score=27.49 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.3
Q ss_pred CCCcchhhhcccccccccchhhh
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i 145 (407)
.|.++.++|...|||++|++++.
T Consensus 17 ~g~s~~~lA~~~gis~~~i~~~e 39 (68)
T 2r1j_L 17 LKIRQAALGKMVGVSNVAISQWE 39 (68)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHH
Confidence 47788999999999999999875
No 151
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=42.88 E-value=1.6 Score=38.96 Aligned_cols=66 Identities=17% Similarity=0.211 Sum_probs=44.4
Q ss_pred CCChhcceeeEEEecc--------------CCCcchhhhcccccccccchhhhHHHHHH-HHHhccccccCCChhhHHHH
Q 015432 107 PLSPNDMVAIALRRLS--------------SGESLQIIGDLFGLNQSTVSQVTWRFVES-MEERGLHHLQWPSKETEMED 171 (407)
Q Consensus 107 ~l~~~~ql~i~L~~La--------------~g~s~~~la~~Fgis~sTvsr~i~~~~~a-l~~~~~~~i~~P~~~~~~~~ 171 (407)
..+++++|+-+|..|+ -..+..+||...|+++.||+|++.++.+. +.+.-...|...+.+ .+.+
T Consensus 146 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~~-~L~~ 224 (250)
T 3e6c_C 146 TYNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVSRVLASLKRENILDKKKNKIIVYNLG-ELKH 224 (250)
T ss_dssp TSCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSEEEESCHH-HHHH
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeCCCEEEEecHH-HHHH
Confidence 4688999988887654 24578899999999999999988776543 222223334444544 4444
Q ss_pred HH
Q 015432 172 IK 173 (407)
Q Consensus 172 i~ 173 (407)
++
T Consensus 225 ~a 226 (250)
T 3e6c_C 225 LS 226 (250)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 152
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=42.72 E-value=3.1 Score=30.07 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.8
Q ss_pred ccCCCcchhhhcccccccccchhhh
Q 015432 121 LSSGESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 121 La~g~s~~~la~~Fgis~sTvsr~i 145 (407)
...|.++.++|...|||++|++++.
T Consensus 20 ~~~gltq~elA~~~gis~~~is~~E 44 (78)
T 3qq6_A 20 KEKGYSLSELAEKAGVAKSYLSSIE 44 (78)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 3468899999999999999999864
No 153
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=42.35 E-value=5.3 Score=32.31 Aligned_cols=27 Identities=11% Similarity=0.278 Sum_probs=22.2
Q ss_pred CCCcchhhhcccccccccchhhhHHHH
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVTWRFV 149 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i~~~~ 149 (407)
.+.+..+|+..+|++++||++++.+..
T Consensus 53 ~~~t~~ela~~l~~~~~~vs~~l~~Le 79 (152)
T 3bj6_A 53 PGATAPQLGAALQMKRQYISRILQEVQ 79 (152)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 367789999999999999998765543
No 154
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=42.22 E-value=3.9 Score=30.81 Aligned_cols=27 Identities=11% Similarity=0.131 Sum_probs=22.7
Q ss_pred CCcchhh----hcccccccccchhhhHHHHH
Q 015432 124 GESLQII----GDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~l----a~~Fgis~sTvsr~i~~~~~ 150 (407)
+.+..+| +..++++++||++++.+...
T Consensus 22 ~~~~~el~~~la~~l~is~~tvs~~l~~Le~ 52 (99)
T 1tbx_A 22 GIATYDLYKKVNAEFPMSTATFYDAKKFLIQ 52 (99)
T ss_dssp TCBHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4567788 99999999999998877665
No 155
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=42.07 E-value=17 Score=29.19 Aligned_cols=27 Identities=11% Similarity=0.070 Sum_probs=22.1
Q ss_pred CCCcchhhhcccccccccchhhhHHHH
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVTWRFV 149 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i~~~~ 149 (407)
.+.+..+|+..++++++||++++.+..
T Consensus 54 ~~~t~~eLa~~l~~~~~tvs~~l~~Le 80 (154)
T 2qww_A 54 PGISVADLTKRLIITGSSAAANVDGLI 80 (154)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 356889999999999999998765543
No 156
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=41.99 E-value=1.1 Score=39.26 Aligned_cols=58 Identities=16% Similarity=0.019 Sum_probs=39.4
Q ss_pred Chh-cceeeEEEeccC-------------CCcchhhhcccccccccchhhhHHHHHH-HHHhccccccCCChh
Q 015432 109 SPN-DMVAIALRRLSS-------------GESLQIIGDLFGLNQSTVSQVTWRFVES-MEERGLHHLQWPSKE 166 (407)
Q Consensus 109 ~~~-~ql~i~L~~La~-------------g~s~~~la~~Fgis~sTvsr~i~~~~~a-l~~~~~~~i~~P~~~ 166 (407)
++. ++|+-+|..++. ..+..+||...|+++.|++|++.++.+. +.+.-...|...+.+
T Consensus 146 ~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~~ 218 (231)
T 3e97_A 146 QNTEAALTHVFANLYRQRLAAGVPQPEVLPLGTQDIMARTSSSRETVSRVLKRLEAHNILEVSPRSVTLLDLA 218 (231)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHTCSSTTEECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSCEEESCHH
T ss_pred cChHHHHHHHHHHHHHhcCCCCCCceEecCCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEecCCEEEEeCHH
Confidence 455 888888877763 3578899999999999999988776542 222223344444444
No 157
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=41.98 E-value=17 Score=28.88 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=21.1
Q ss_pred CCcchhhhcccccccccchhhhHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFV 149 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~ 149 (407)
+.+..+|+..++++++||++++.+..
T Consensus 54 ~~~~~~la~~l~~~~~tvs~~l~~L~ 79 (147)
T 1z91_A 54 TLTVKKMGEQLYLDSGTLTPMLKRME 79 (147)
T ss_dssp EEEHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCcCcHHHHHHHHH
Confidence 45678999999999999998765543
No 158
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=41.77 E-value=2.7 Score=35.93 Aligned_cols=42 Identities=26% Similarity=0.248 Sum_probs=32.0
Q ss_pred CChhcceeeEEEeccC-------------CCcchhhhcccccccccchhhhHHHH
Q 015432 108 LSPNDMVAIALRRLSS-------------GESLQIIGDLFGLNQSTVSQVTWRFV 149 (407)
Q Consensus 108 l~~~~ql~i~L~~La~-------------g~s~~~la~~Fgis~sTvsr~i~~~~ 149 (407)
.+++++++-+|..|+. ..+..+||...|+++.|++|++.++.
T Consensus 135 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~ 189 (207)
T 2oz6_A 135 LDVTGRVARTLLDLCQQPDAMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLE 189 (207)
T ss_dssp CCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCceecccCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 5677787777765543 24668999999999999999877654
No 159
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=41.67 E-value=7.7 Score=28.95 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=23.5
Q ss_pred CCcchhhhccccccccc-chhhhHHHHHH
Q 015432 124 GESLQIIGDLFGLNQST-VSQVTWRFVES 151 (407)
Q Consensus 124 g~s~~~la~~Fgis~sT-vsr~i~~~~~a 151 (407)
+.+..+|+..++++++| +++++.+....
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~~ 58 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIRA 58 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHHT
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHHC
Confidence 46789999999999999 99988776543
No 160
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=41.60 E-value=18 Score=24.84 Aligned_cols=24 Identities=17% Similarity=0.087 Sum_probs=20.7
Q ss_pred CCCcchhhhcccc--cccccchhhhH
Q 015432 123 SGESLQIIGDLFG--LNQSTVSQVTW 146 (407)
Q Consensus 123 ~g~s~~~la~~Fg--is~sTvsr~i~ 146 (407)
.|.++.++|...| +|++|++++.+
T Consensus 20 ~glsq~~lA~~~g~~is~~~i~~~e~ 45 (71)
T 2ewt_A 20 QGLSLHGVEEKSQGRWKAVVVGSYER 45 (71)
T ss_dssp TTCCHHHHHHHTTTSSCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCcCCHHHHHHHHC
Confidence 4788999999999 99999998653
No 161
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=41.42 E-value=5.5 Score=28.15 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.6
Q ss_pred CCCcchhhhcccccccccchhhh
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i 145 (407)
.|.++..+|...|||++|++++.
T Consensus 19 ~g~sq~~lA~~~gis~~~i~~~e 41 (78)
T 3b7h_A 19 QNLTINRVATLAGLNQSTVNAMF 41 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 47889999999999999999875
No 162
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=41.02 E-value=3.5 Score=35.03 Aligned_cols=65 Identities=15% Similarity=0.008 Sum_probs=43.5
Q ss_pred CCChhcceeeEEEeccC--C-----------CcchhhhcccccccccchhhhHHHHHH-HHHhccccccCCChhhHHHHH
Q 015432 107 PLSPNDMVAIALRRLSS--G-----------ESLQIIGDLFGLNQSTVSQVTWRFVES-MEERGLHHLQWPSKETEMEDI 172 (407)
Q Consensus 107 ~l~~~~ql~i~L~~La~--g-----------~s~~~la~~Fgis~sTvsr~i~~~~~a-l~~~~~~~i~~P~~~~~~~~i 172 (407)
..+++++|+-+|..|+. | .+..+||...|+++.||+|++.++.+. +.+.-...|...+.+ .+.++
T Consensus 109 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~~-~L~~~ 187 (195)
T 3b02_A 109 TGELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVSKVLADLRREGLIATAYRRVYLLDLA-ALERE 187 (195)
T ss_dssp SSCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEETTEEEECCHH-HHHHH
T ss_pred cCCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEEeCHH-HHHHH
Confidence 46788888888877653 2 467889999999999999998876543 222223344445544 44433
No 163
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=40.99 E-value=5.7 Score=28.01 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.6
Q ss_pred CCCcchhhhcccccccccchhhh
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i 145 (407)
.|.++.++|...|||++|++++.
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e 44 (77)
T 2b5a_A 22 KGVSQEELADLAGLHRTYISEVE 44 (77)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHH
Confidence 47889999999999999999875
No 164
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=40.98 E-value=17 Score=30.00 Aligned_cols=28 Identities=11% Similarity=0.184 Sum_probs=22.8
Q ss_pred cCCCcchhhhcccccccccchhhhHHHH
Q 015432 122 SSGESLQIIGDLFGLNQSTVSQVTWRFV 149 (407)
Q Consensus 122 a~g~s~~~la~~Fgis~sTvsr~i~~~~ 149 (407)
..+.+..+|+..++++++||++++.+..
T Consensus 66 ~~~~t~~eLa~~l~i~~~tvs~~l~~Le 93 (166)
T 3deu_A 66 PPDQSQIQLAKAIGIEQPSLVRTLDQLE 93 (166)
T ss_dssp CSSEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHhhHHHHHHHHH
Confidence 3457889999999999999998776543
No 165
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=40.97 E-value=6.4 Score=28.61 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.1
Q ss_pred CCCcchhhhcccccccccchhhhH
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVTW 146 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i~ 146 (407)
.|.++.++|...|||++|++++.+
T Consensus 24 ~glsq~~lA~~~gis~~~i~~~e~ 47 (88)
T 2wiu_B 24 NGWTQSELAKKIGIKQATISNFEN 47 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 478889999999999999998764
No 166
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=40.78 E-value=5.6 Score=28.11 Aligned_cols=21 Identities=14% Similarity=0.128 Sum_probs=19.3
Q ss_pred Ccchhhhcccccccccchhhh
Q 015432 125 ESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 125 ~s~~~la~~Fgis~sTvsr~i 145 (407)
.++..+|+.+||++++||+.+
T Consensus 14 ~s~t~aA~~L~vtQ~AVS~~i 34 (66)
T 2ovg_A 14 FGQTKTAKDLGVYPSSINQAI 34 (66)
T ss_dssp HCHHHHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHH
Confidence 388999999999999999986
No 167
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=40.77 E-value=3.3 Score=35.37 Aligned_cols=64 Identities=17% Similarity=0.203 Sum_probs=42.9
Q ss_pred CChhcceeeEEEeccC-------------CCcchhhhcccccccccchhhhHHHHHH-HHHhccccccCCChhhHHHHH
Q 015432 108 LSPNDMVAIALRRLSS-------------GESLQIIGDLFGLNQSTVSQVTWRFVES-MEERGLHHLQWPSKETEMEDI 172 (407)
Q Consensus 108 l~~~~ql~i~L~~La~-------------g~s~~~la~~Fgis~sTvsr~i~~~~~a-l~~~~~~~i~~P~~~~~~~~i 172 (407)
.+++++|+-+|..|+. ..+..+||...|+++.||+|++.++.+. +.+.-...|...+.+ .+.++
T Consensus 117 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~~-~L~~~ 194 (202)
T 2zcw_A 117 QRLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVTKVIGELAREGYIRSGYGKIQLLDLK-GLKEL 194 (202)
T ss_dssp CCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEESCHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCCCEEEEeCHH-HHHHH
Confidence 5778888888877653 2467899999999999999988776542 222223345555554 44443
No 168
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=40.65 E-value=21 Score=31.56 Aligned_cols=51 Identities=20% Similarity=0.350 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHhhhhhhhhcCCCcCCCCCCCChhcceeeEEEeccCCCcchhhhcccccccccchhhhHH
Q 015432 77 ISRKTFDYICSLVKEDLAARQSNFSFSNGKPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWR 147 (407)
Q Consensus 77 msr~tF~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~ 147 (407)
|+....+.+.+.|+..+.... + ..|..+| +...|+..||||+++|...+..
T Consensus 1 m~~~l~~~v~~~L~~~I~~g~--l--~pG~~Lp----------------sE~~La~~lgVSRtpVREAL~~ 51 (239)
T 2di3_A 1 MSVKAHESVMDWVTEELRSGR--L--KIGDHLP----------------SERALSETLGVSRSSLREALRV 51 (239)
T ss_dssp -CHHHHHHHHHHHHHHHHHTS--S--CTTCBCC----------------CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHhCC--C--CCCCcCC----------------CHHHHHHHHCCCHHHHHHHHHH
Confidence 566667777777777665421 1 1122232 2357999999999999865543
No 169
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=40.61 E-value=3.4 Score=35.94 Aligned_cols=42 Identities=24% Similarity=0.268 Sum_probs=33.1
Q ss_pred CChhcceeeEEEeccCC-------------CcchhhhcccccccccchhhhHHHH
Q 015432 108 LSPNDMVAIALRRLSSG-------------ESLQIIGDLFGLNQSTVSQVTWRFV 149 (407)
Q Consensus 108 l~~~~ql~i~L~~La~g-------------~s~~~la~~Fgis~sTvsr~i~~~~ 149 (407)
.+++++|+-+|..|+.. .+..+||...|++++||+|++.++.
T Consensus 158 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg~sr~tvsR~l~~L~ 212 (230)
T 3iwz_A 158 LDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQ 212 (230)
T ss_dssp CCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 57788888888777532 3678999999999999999876543
No 170
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=40.60 E-value=3.1 Score=33.04 Aligned_cols=28 Identities=11% Similarity=0.156 Sum_probs=23.5
Q ss_pred CCCcchhhhcccccccccchhhhHHHHH
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
.+.+..+|+..+|+|++||++.+.....
T Consensus 55 ~~~s~~eLa~~l~is~stvs~~L~~L~~ 82 (122)
T 1u2w_A 55 EELCVCDIANILGVTIANASHHLRTLYK 82 (122)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3567899999999999999998876553
No 171
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=40.42 E-value=2.3 Score=37.09 Aligned_cols=83 Identities=16% Similarity=0.137 Sum_probs=51.6
Q ss_pred CChhHHHhhcCCCHHHHHHHHHHhhhhhhhhcCCCcCCCCCCCChhcceeeEEEecc--------------CCCcchhhh
Q 015432 66 KTSKNFESVFKISRKTFDYICSLVKEDLAARQSNFSFSNGKPLSPNDMVAIALRRLS--------------SGESLQIIG 131 (407)
Q Consensus 66 ~~d~~F~~~frmsr~tF~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~ql~i~L~~La--------------~g~s~~~la 131 (407)
.+-+.|...+.-.+..-..+...+...+....... ..-...++.++|+-+|..|+ ...+..+||
T Consensus 107 i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~--~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA 184 (227)
T 3d0s_A 107 MDRDALRSWIADRPEISEQLLRVLARRLRRTNNNL--ADLIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIA 184 (227)
T ss_dssp EEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH--HHHHHSCHHHHHHHHHHHHHHHHEEEETTEEEEECCCCHHHHH
T ss_pred EeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHHHhCCcCCCceEEcCCCCHHHHH
Confidence 34566777666666555555554443332211000 00023678888888777653 235778999
Q ss_pred cccccccccchhhhHHHHH
Q 015432 132 DLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 132 ~~Fgis~sTvsr~i~~~~~ 150 (407)
...|+++.|++|++.++.+
T Consensus 185 ~~lg~sr~tvsR~l~~l~~ 203 (227)
T 3d0s_A 185 QLVGASRETVNKALADFAH 203 (227)
T ss_dssp HHHTSCHHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHH
Confidence 9999999999999877643
No 172
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=40.40 E-value=4.3 Score=32.34 Aligned_cols=27 Identities=15% Similarity=0.180 Sum_probs=23.5
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
+.+...++..+|+|++||++.+....+
T Consensus 59 ~~s~~ela~~lgis~stvs~~L~~Le~ 85 (122)
T 1r1t_A 59 ELCVGDLAQAIGVSESAVSHQLRSLRN 85 (122)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 568899999999999999998877655
No 173
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=40.21 E-value=9 Score=30.63 Aligned_cols=27 Identities=11% Similarity=0.159 Sum_probs=22.5
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
+.+..+||..+|++++||++++.+...
T Consensus 51 ~~t~~eLa~~l~~s~~tvs~~l~~L~~ 77 (146)
T 3tgn_A 51 SLTNSELARRLNVSQAAVTKAIKSLVK 77 (146)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 378899999999999999988766443
No 174
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=40.20 E-value=7.6 Score=29.89 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=19.3
Q ss_pred cchhhhcccccccccchhhhHHH
Q 015432 126 SLQIIGDLFGLNQSTVSQVTWRF 148 (407)
Q Consensus 126 s~~~la~~Fgis~sTvsr~i~~~ 148 (407)
+...|+..||||++||.+.+...
T Consensus 45 s~~eLa~~lgVSr~tVr~al~~L 67 (102)
T 2b0l_A 45 VASKIADRVGITRSVIVNALRKL 67 (102)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 56889999999999998876554
No 175
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=40.18 E-value=6.2 Score=29.60 Aligned_cols=23 Identities=4% Similarity=-0.051 Sum_probs=18.8
Q ss_pred CCcchhhhcccccccccchhhhH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTW 146 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~ 146 (407)
..+..+|+..|+||.+||.+.+.
T Consensus 16 ~vsv~eLA~~l~VS~~TIRrDL~ 38 (87)
T 2k02_A 16 RMEAKQLSARLQTPQPLIDAMLE 38 (87)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHH
Confidence 35568999999999999987653
No 176
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=40.12 E-value=35 Score=28.42 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=22.9
Q ss_pred CcchhhhcccccccccchhhhHHHHH
Q 015432 125 ESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 125 ~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
.+..+|+..++++++||++++.+...
T Consensus 87 ~t~~eLa~~l~is~~tvs~~l~~Le~ 112 (181)
T 2fbk_A 87 LRPTELSALAAISGPSTSNRIVRLLE 112 (181)
T ss_dssp BCHHHHHHHCSCCSGGGSSHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 78999999999999999998876554
No 177
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=40.02 E-value=8.6 Score=32.17 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=26.2
Q ss_pred CCcchhhhcccccccccchhhhH---HHHHHHHHhccc
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTW---RFVESMEERGLH 158 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~---~~~~al~~~~~~ 158 (407)
|.+...||...|||++|++++.. .+...+.+++..
T Consensus 48 ~lTv~eIA~~LGIS~~TLyrW~k~~p~~~~~l~~vad~ 85 (155)
T 2ao9_A 48 KRTQDEMANELGINRTTLWEWRTKNQDFIAFKSEVADS 85 (155)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHcCcchHHHHHHHHHH
Confidence 57889999999999999999887 333444444333
No 178
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=39.99 E-value=6 Score=27.56 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=20.5
Q ss_pred CCCcchhhhcccccccccchhhh
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i 145 (407)
.|.++.++|...|||++|++++.
T Consensus 25 ~g~s~~~lA~~~gis~~~i~~~e 47 (74)
T 1y7y_A 25 KGLSQETLAFLSGLDRSYVGGVE 47 (74)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 47889999999999999999865
No 179
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=39.94 E-value=2.5 Score=32.80 Aligned_cols=37 Identities=11% Similarity=0.098 Sum_probs=25.8
Q ss_pred cceeeEEEeccCCCcchhhhcccccccccchhhhHHH
Q 015432 112 DMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRF 148 (407)
Q Consensus 112 ~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~ 148 (407)
.+++++......+.|+...+..|+||.+++.++...+
T Consensus 38 rK~~VV~~v~~g~lS~~EAa~ry~Is~~ei~~W~r~y 74 (101)
T 2oa4_A 38 RKIAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSAL 74 (101)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 3556666666667778888888888888777665443
No 180
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=39.46 E-value=7.7 Score=29.93 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=24.1
Q ss_pred CCCcchhhhcccccccccchhhhHHHHHH
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVTWRFVES 151 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i~~~~~a 151 (407)
.+.+..+|+..+|+|++||++.+....++
T Consensus 37 ~~~s~~eLa~~lgis~stvs~~L~~L~~~ 65 (108)
T 2kko_A 37 GERAVEAIATATGMNLTTASANLQALKSG 65 (108)
T ss_dssp CCEEHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34678899999999999999988776553
No 181
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=39.24 E-value=8.8 Score=30.43 Aligned_cols=27 Identities=15% Similarity=0.083 Sum_probs=22.4
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
+.+..+|+..++++++||++++.+...
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~Le~ 76 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRMEI 76 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHHHH
Confidence 578899999999999999987755443
No 182
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=39.21 E-value=6 Score=28.14 Aligned_cols=23 Identities=4% Similarity=0.265 Sum_probs=20.6
Q ss_pred CCCcchhhhcccccccccchhhh
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i 145 (407)
.|.++..+|...|||++|++++.
T Consensus 14 ~glsq~~lA~~~gis~~~i~~~e 36 (77)
T 2k9q_A 14 LSLTAKSVAEEMGISRQQLCNIE 36 (77)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHH
Confidence 47889999999999999999875
No 183
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=39.09 E-value=11 Score=30.61 Aligned_cols=28 Identities=11% Similarity=0.118 Sum_probs=22.9
Q ss_pred CCCcchhhhcccccccccchhhhHHHHH
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
.+.+..+|+..+|++++||++++.+...
T Consensus 56 ~~~t~~ela~~l~i~~~tvs~~l~~Le~ 83 (155)
T 3cdh_A 56 DAMMITRLAKLSLMEQSRMTRIVDQMDA 83 (155)
T ss_dssp SCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3568899999999999999987765443
No 184
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=38.93 E-value=5.8 Score=27.86 Aligned_cols=24 Identities=13% Similarity=0.253 Sum_probs=21.2
Q ss_pred cCCCcchhhhcccccccccchhhh
Q 015432 122 SSGESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 122 a~g~s~~~la~~Fgis~sTvsr~i 145 (407)
..|.++.++|...|||++|++++.
T Consensus 21 ~~g~s~~~lA~~~gis~~~i~~~e 44 (76)
T 3bs3_A 21 EKQRTNRWLAEQMGKSENTISRWC 44 (76)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 358889999999999999999875
No 185
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=38.56 E-value=6.1 Score=29.44 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=20.4
Q ss_pred CCCcchhhhcccccccccchhhh
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i 145 (407)
.|.++.++|...|||++|++++.
T Consensus 21 ~glsq~~lA~~~gis~~~is~~e 43 (94)
T 2kpj_A 21 SEKTQLEIAKSIGVSPQTFNTWC 43 (94)
T ss_dssp SSSCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 47788999999999999999875
No 186
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=38.44 E-value=20 Score=29.00 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=20.6
Q ss_pred CcchhhhcccccccccchhhhHHH
Q 015432 125 ESLQIIGDLFGLNQSTVSQVTWRF 148 (407)
Q Consensus 125 ~s~~~la~~Fgis~sTvsr~i~~~ 148 (407)
.+..+|+..++++++|+++++.+.
T Consensus 52 ~t~~eLa~~l~~~~~tvs~~v~~L 75 (147)
T 4b8x_A 52 LPMSKIGERLMVHPTSVTNTVDRL 75 (147)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHH
Confidence 567899999999999999877553
No 187
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=38.35 E-value=6.3 Score=27.62 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.4
Q ss_pred CCCcchhhhcccccccccchhhh
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i 145 (407)
.|.++.++|...|||++|++++.
T Consensus 17 ~gls~~~lA~~~gis~~~i~~~e 39 (76)
T 1adr_A 17 LKIRQAALGKMVGVSNVAISQWE 39 (76)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 47788999999999999999875
No 188
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=38.26 E-value=4.8 Score=37.68 Aligned_cols=30 Identities=17% Similarity=0.141 Sum_probs=24.8
Q ss_pred EeccCCCcchhhhcccccccccchhhhHHH
Q 015432 119 RRLSSGESLQIIGDLFGLNQSTVSQVTWRF 148 (407)
Q Consensus 119 ~~La~g~s~~~la~~Fgis~sTvsr~i~~~ 148 (407)
.|...+.+..+||..||||++||+|.+...
T Consensus 16 l~~~~~~~~~ela~~l~vS~~tIrRdL~~l 45 (315)
T 2w48_A 16 LYYEQDMTQAQIARELGIYRTTISRLLKRG 45 (315)
T ss_dssp HHHTSCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 345567899999999999999999977543
No 189
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=37.98 E-value=2.1 Score=37.18 Aligned_cols=43 Identities=21% Similarity=0.152 Sum_probs=33.8
Q ss_pred CChhcceeeEEEeccC--------------CCcchhhhcccccccccchhhhHHHHH
Q 015432 108 LSPNDMVAIALRRLSS--------------GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 108 l~~~~ql~i~L~~La~--------------g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
.+++++|+-+|..++. ..+..+||...|+++.|++|++.++.+
T Consensus 137 ~~~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 193 (220)
T 2fmy_A 137 KDARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLGTTRQTVSVLLNDFKK 193 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 4667777777766542 467889999999999999999877643
No 190
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=37.92 E-value=2.1 Score=30.75 Aligned_cols=39 Identities=18% Similarity=0.251 Sum_probs=31.9
Q ss_pred CChhcceeeEEEeccCC-CcchhhhcccccccccchhhhH
Q 015432 108 LSPNDMVAIALRRLSSG-ESLQIIGDLFGLNQSTVSQVTW 146 (407)
Q Consensus 108 l~~~~ql~i~L~~La~g-~s~~~la~~Fgis~sTvsr~i~ 146 (407)
--.+++|..++.-+..| .+....|..|||..||+..-+.
T Consensus 13 ~Yte~~L~~Ai~aVr~g~mS~~~Aak~yGVP~sTL~~RVk 52 (70)
T 2cob_A 13 QYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVK 52 (70)
T ss_dssp CCCHHHHHHHHHHHHTTSSCHHHHHHHHTCCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCccHHHHHHHhCCChHHHHHHHH
Confidence 45577788888888888 8999999999999999876443
No 191
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=37.70 E-value=6.5 Score=28.27 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.6
Q ss_pred CCCcchhhhcccccccccchhhh
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i 145 (407)
.|.++.++|...|||++|++++.
T Consensus 26 ~gltq~elA~~~gis~~~is~~e 48 (83)
T 3f6w_A 26 AGITQKELAARLGRPQSFVSKTE 48 (83)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 47889999999999999999874
No 192
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=37.63 E-value=11 Score=27.28 Aligned_cols=26 Identities=19% Similarity=0.082 Sum_probs=20.4
Q ss_pred CCcchhhhccc-----ccccccchhhhHHHH
Q 015432 124 GESLQIIGDLF-----GLNQSTVSQVTWRFV 149 (407)
Q Consensus 124 g~s~~~la~~F-----gis~sTvsr~i~~~~ 149 (407)
..+..+|+..+ +||.+||+|.+..+.
T Consensus 33 ~~s~~el~~~l~~~~~~is~~TVyR~L~~L~ 63 (83)
T 2fu4_A 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFD 63 (83)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHH
Confidence 35677899988 999999998765543
No 193
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=37.60 E-value=5 Score=28.89 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=20.7
Q ss_pred CCCcchhhhcccccccccchhhh
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i 145 (407)
.|.++..+|...|||++|++++.
T Consensus 23 ~glsq~~lA~~~gis~~~i~~~e 45 (82)
T 3s8q_A 23 KGMTQEDLAYKSNLDRTYISGIE 45 (82)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHH
Confidence 48889999999999999999874
No 194
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=37.39 E-value=5.1 Score=30.28 Aligned_cols=23 Identities=4% Similarity=-0.019 Sum_probs=20.9
Q ss_pred CCCcchhhhcccccccccchhhh
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i 145 (407)
.|.++..+|...|||++|+++|-
T Consensus 42 ~glsq~elA~~lgvs~~~is~~E 64 (99)
T 2ppx_A 42 LKLTQEEFSARYHIPLGTLRDWE 64 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHH
Confidence 58899999999999999999874
No 195
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=37.36 E-value=11 Score=28.92 Aligned_cols=28 Identities=4% Similarity=0.092 Sum_probs=23.5
Q ss_pred CCCcchhhhcccccccccchhhhHHHHH
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
.+.+..+|+..+|+|++||++.+.....
T Consensus 33 ~~~~~~ela~~l~is~~tv~~~l~~L~~ 60 (114)
T 2oqg_A 33 ADQSASSLATRLPVSRQAIAKHLNALQA 60 (114)
T ss_dssp SCBCHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4567889999999999999998876544
No 196
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=37.21 E-value=6.6 Score=30.28 Aligned_cols=25 Identities=8% Similarity=0.069 Sum_probs=22.3
Q ss_pred cCCCcchhhhcccccccccchhhhH
Q 015432 122 SSGESLQIIGDLFGLNQSTVSQVTW 146 (407)
Q Consensus 122 a~g~s~~~la~~Fgis~sTvsr~i~ 146 (407)
..|.++.++|...|||++|++++.+
T Consensus 25 ~~gltq~eLA~~lGis~~~is~ie~ 49 (104)
T 3trb_A 25 LDKMSANQLAKHLAIPTNRVTAILN 49 (104)
T ss_dssp TTSCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4589999999999999999999764
No 197
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=37.19 E-value=20 Score=29.22 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=22.4
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
+.+..+|+..++++++||++++.+...
T Consensus 67 ~~t~~eLa~~l~~~~~~vs~~l~~Le~ 93 (161)
T 3e6m_A 67 ELTVGQLATLGVMEQSTTSRTVDQLVD 93 (161)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 567789999999999999988766443
No 198
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=37.19 E-value=8 Score=29.40 Aligned_cols=20 Identities=35% Similarity=0.410 Sum_probs=17.6
Q ss_pred cchhhhcccccccccchhhh
Q 015432 126 SLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 126 s~~~la~~Fgis~sTvsr~i 145 (407)
+..+|+..||||++||++.+
T Consensus 37 s~~eLa~~~~vSr~tvr~al 56 (102)
T 1v4r_A 37 SVADIRAQFGVAAKTVSRAL 56 (102)
T ss_dssp CHHHHHHHSSSCTTHHHHHT
T ss_pred CHHHHHHHHCcCHHHHHHHH
Confidence 67899999999999998854
No 199
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=37.01 E-value=8.5 Score=30.76 Aligned_cols=28 Identities=11% Similarity=0.211 Sum_probs=23.0
Q ss_pred CCCcchhhhcccccccccchhhhHHHHH
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
.+.+..+|+..++++++||++++.+...
T Consensus 49 ~~~t~~eLa~~l~~~~~tvs~~l~~L~~ 76 (140)
T 3hsr_A 49 EKLNIKKLGERVFLDSGTLTPLLKKLEK 76 (140)
T ss_dssp CEEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 3567899999999999999988766543
No 200
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=36.93 E-value=8.1 Score=31.99 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=20.3
Q ss_pred CCCcchhhhcccccccccchhhhHHHHH
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
.+.+..+|+..++++++||++++.+...
T Consensus 61 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 88 (168)
T 3u2r_A 61 EGMATLQIADRLISRAPDITRLIDRLDD 88 (168)
T ss_dssp SCEEHHHHHHHC---CTHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 3678899999999999999988766543
No 201
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=36.72 E-value=5.1 Score=34.16 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=23.9
Q ss_pred eccCCCcchhhhcccccccccchhhhH
Q 015432 120 RLSSGESLQIIGDLFGLNQSTVSQVTW 146 (407)
Q Consensus 120 ~La~g~s~~~la~~Fgis~sTvsr~i~ 146 (407)
++..|.++..||..+|||.+|+++++.
T Consensus 154 ~~~~G~s~~~Ia~~l~is~~tv~r~l~ 180 (183)
T 1gdt_A 154 MWQQGLGASHISKTMNIARSTVYKVIN 180 (183)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHCcCHHHHHHHHh
Confidence 456799999999999999999998864
No 202
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=36.68 E-value=7.8 Score=28.74 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=21.4
Q ss_pred CCCcchhhhcccccccccchhhhH
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVTW 146 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i~ 146 (407)
.|.++.++|...|||++|++++.+
T Consensus 20 ~gltq~~lA~~~gis~~~is~~e~ 43 (94)
T 2ict_A 20 LNVSLREFARAMEIAPSTASRLLT 43 (94)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 477889999999999999999865
No 203
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=36.48 E-value=9.5 Score=28.33 Aligned_cols=28 Identities=7% Similarity=0.120 Sum_probs=23.2
Q ss_pred CCcchhhhcccccccccchhhhHHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVES 151 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~a 151 (407)
+.+..+|+..+|+|++|+++.+.+....
T Consensus 30 ~~~~~ela~~l~is~~tvs~~l~~L~~~ 57 (100)
T 1ub9_A 30 KAPFSQIQKVLDLTPGNLDSHIRVLERN 57 (100)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4678899999999999999987765543
No 204
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=36.25 E-value=8.4 Score=30.73 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=21.2
Q ss_pred CCcchhhhcccccccccchhhhHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRF 148 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~ 148 (407)
+.+..+|+..++++++||++++.+.
T Consensus 43 ~~t~~~la~~l~~s~~~vs~~l~~L 67 (144)
T 1lj9_A 43 GIIQEKIAELIKVDRTTAARAIKRL 67 (144)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHhHHHHHHHHH
Confidence 5688999999999999999876553
No 205
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=36.17 E-value=3.2 Score=36.12 Aligned_cols=43 Identities=14% Similarity=0.137 Sum_probs=32.4
Q ss_pred CChhcceeeEEEeccC--------------CCcchhhhcccccccccchhhhHHHHH
Q 015432 108 LSPNDMVAIALRRLSS--------------GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 108 l~~~~ql~i~L~~La~--------------g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
.+++++|+-+|..++. ..+...||...|+++.||+|++.++.+
T Consensus 133 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~L~~ 189 (222)
T 1ft9_A 133 HDIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTALNSLIK 189 (222)
T ss_dssp HHHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 4566777766666552 256789999999999999999877643
No 206
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=36.05 E-value=27 Score=30.21 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=21.9
Q ss_pred CCCcchhhhcccccccccchhhhHHH
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVTWRF 148 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i~~~ 148 (407)
.+.+..+|+..++++++||++++.+.
T Consensus 61 ~~~t~~eLa~~l~i~~stvs~~l~~L 86 (207)
T 2fxa_A 61 NGASISEIAKFGVMHVSTAFNFSKKL 86 (207)
T ss_dssp TSEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 46788999999999999999876553
No 207
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=35.96 E-value=7.6 Score=32.17 Aligned_cols=25 Identities=8% Similarity=0.198 Sum_probs=0.0
Q ss_pred ccCCCcchhhhcccccccccchhhh
Q 015432 121 LSSGESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 121 La~g~s~~~la~~Fgis~sTvsr~i 145 (407)
...|.++..+|...|||++|++++-
T Consensus 11 ~~~gltq~elA~~lgis~~~vs~~e 35 (158)
T 2p5t_A 11 KTHDLTQLEFARIVGISRNSLSRYE 35 (158)
T ss_dssp -------------------------
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 3468899999999999999999983
No 208
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=35.96 E-value=11 Score=30.02 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=22.4
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
+.+..+||..+|++++||++.+.+...
T Consensus 31 ~~s~~ela~~l~is~~tv~~~l~~Le~ 57 (139)
T 2x4h_A 31 GAKINRIAKDLKIAPSSVFEEVSHLEE 57 (139)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHhCCChHHHHHHHHHHHH
Confidence 457789999999999999998766543
No 209
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=35.96 E-value=11 Score=30.25 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=21.7
Q ss_pred CCcchhhhcccccccccchhhhHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFV 149 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~ 149 (407)
+.+..+||..+|||++||++.+.+..
T Consensus 22 ~~~~~ela~~l~vs~~tvs~~l~~Le 47 (142)
T 1on2_A 22 YARVSDIAEALAVHPSSVTKMVQKLD 47 (142)
T ss_dssp SCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 46778999999999999999776543
No 210
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=35.79 E-value=8.9 Score=31.37 Aligned_cols=28 Identities=14% Similarity=0.382 Sum_probs=23.4
Q ss_pred CCCcchhhhcccccccccchhhhHHHHH
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
.+.+..+||..++++++||++++.+...
T Consensus 63 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 90 (159)
T 3s2w_A 63 DGINQESLSDYLKIDKGTTARAIQKLVD 90 (159)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4678899999999999999998766543
No 211
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=35.74 E-value=8.1 Score=26.97 Aligned_cols=22 Identities=14% Similarity=0.102 Sum_probs=18.9
Q ss_pred cchhhhcccccccccchhhhHH
Q 015432 126 SLQIIGDLFGLNQSTVSQVTWR 147 (407)
Q Consensus 126 s~~~la~~Fgis~sTvsr~i~~ 147 (407)
+..+++..+|||++|+++.+.+
T Consensus 12 ~~~eva~~lgvsrstiy~~~~~ 33 (66)
T 1z4h_A 12 DLKFIMADTGFGKTFIYDRIKS 33 (66)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHC
Confidence 4578999999999999998764
No 212
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=35.62 E-value=4.3 Score=30.72 Aligned_cols=41 Identities=5% Similarity=-0.011 Sum_probs=27.9
Q ss_pred CChhcceeeEEEec--cCCCcchhhhcccccccccchhhhHHH
Q 015432 108 LSPNDMVAIALRRL--SSGESLQIIGDLFGLNQSTVSQVTWRF 148 (407)
Q Consensus 108 l~~~~ql~i~L~~L--a~g~s~~~la~~Fgis~sTvsr~i~~~ 148 (407)
++.++.+.+.+.+- ..|...++|+...+++++||++++.+.
T Consensus 18 Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~L 60 (91)
T 2dk5_A 18 SDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNL 60 (91)
T ss_dssp SCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 44444443333333 227889999999999999998876554
No 213
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=35.51 E-value=17 Score=28.93 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=17.5
Q ss_pred cchhhhcccccccccchhhhHHH
Q 015432 126 SLQIIGDLFGLNQSTVSQVTWRF 148 (407)
Q Consensus 126 s~~~la~~Fgis~sTvsr~i~~~ 148 (407)
+.+.+|..||||++||.+.+...
T Consensus 37 s~~~La~~~~vSr~tvr~Al~~L 59 (126)
T 3ic7_A 37 SVREYASIVEVNANTVMRSYEYL 59 (126)
T ss_dssp CTTTTTTCC-CCSGGGHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 45789999999999998765443
No 214
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=35.43 E-value=7.9 Score=31.36 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=21.7
Q ss_pred CCCcchhhhcccccccccchhhhHHH
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVTWRF 148 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i~~~ 148 (407)
.+.+..+|+..++++++||++++.+.
T Consensus 60 ~~~t~~ela~~l~~s~~tvs~~l~~L 85 (153)
T 2pex_A 60 DERSVSEIGERLYLDSATLTPLLKRL 85 (153)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHH
Confidence 45678999999999999999876553
No 215
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=35.39 E-value=8.7 Score=30.48 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=22.7
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
+.+..+||..++++++||++++.+...
T Consensus 47 ~~t~~ela~~l~~~~~tvs~~l~~Le~ 73 (139)
T 3eco_A 47 GLTQNDIAKALQRTGPTVSNLLRNLER 73 (139)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 567889999999999999998766544
No 216
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=35.36 E-value=12 Score=28.17 Aligned_cols=27 Identities=26% Similarity=0.185 Sum_probs=22.7
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
..+..+|+..+|+|++||++.+.....
T Consensus 36 ~~~~~ela~~l~is~~tvs~~L~~L~~ 62 (102)
T 3pqk_A 36 EFSVGELEQQIGIGQPTLSQQLGVLRE 62 (102)
T ss_dssp CBCHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 467889999999999999998766544
No 217
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=35.06 E-value=7.7 Score=28.53 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=21.1
Q ss_pred CCCcchhhhcccccccccchhhhH
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVTW 146 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i~ 146 (407)
.|.++..+|...|||++|++++.+
T Consensus 29 ~glsq~~lA~~~gis~~~is~~e~ 52 (92)
T 1lmb_3 29 LGLSQESVADKMGMGQSGVGALFN 52 (92)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 378899999999999999998753
No 218
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=34.98 E-value=8 Score=27.70 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.5
Q ss_pred CCCcchhhhcccccccccchhhh
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i 145 (407)
.|.++.++|...|||++|++++.
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e 44 (84)
T 2ef8_A 22 ASLSQSELAIFLGLSQSDISKIE 44 (84)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHH
Confidence 47889999999999999999865
No 219
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=34.90 E-value=8.1 Score=36.63 Aligned_cols=38 Identities=5% Similarity=0.004 Sum_probs=0.0
Q ss_pred cceeeEEEeccCCCcchhhhcccccccccchhhhHHHHH
Q 015432 112 DMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 112 ~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
.+++..|++ ..+.+..+||..||||++||+|.+.+..+
T Consensus 23 ~~iL~~l~~-~~~~t~~eLa~~l~vs~~Tv~r~l~~Le~ 60 (345)
T 2o0m_A 23 FQILRNIYW-MQPIGRRSLSETMGITERVLRTETDVLKQ 60 (345)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344444444 46889999999999999999998876543
No 220
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=34.74 E-value=7.8 Score=28.93 Aligned_cols=41 Identities=12% Similarity=0.063 Sum_probs=29.8
Q ss_pred CCCcchhhhcccccccccchhhhHHHHHHHHHhccccccCCChhhHHHHHHHHHH
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVTWRFVESMEERGLHHLQWPSKETEMEDIKSKFE 177 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i~~~~~al~~~~~~~i~~P~~~~~~~~i~~~f~ 177 (407)
.|.++.++|...|||++|++++.+. . . |+.+ .+..++..|.
T Consensus 36 ~glTq~eLA~~~GiS~~tis~iE~G---------~---~-~s~~-~l~kIa~~L~ 76 (88)
T 3t76_A 36 RDMKKGELREAVGVSKSTFAKLGKN---------E---N-VSLT-VLLAICEYLN 76 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT---------C---C-CCHH-HHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC---------C---C-cCHH-HHHHHHHHHC
Confidence 5889999999999999999987532 1 1 4444 5666666553
No 221
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=34.45 E-value=11 Score=29.47 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=19.2
Q ss_pred cchhhhcccccccccchhhhHHHH
Q 015432 126 SLQIIGDLFGLNQSTVSQVTWRFV 149 (407)
Q Consensus 126 s~~~la~~Fgis~sTvsr~i~~~~ 149 (407)
+.+.+|..||||++||.+.+....
T Consensus 35 s~~~La~~~~vSr~tvr~al~~L~ 58 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKAYQSLL 58 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457899999999999987665543
No 222
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=33.92 E-value=4.1 Score=33.06 Aligned_cols=27 Identities=19% Similarity=0.264 Sum_probs=22.4
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
+.+..+|+..++++++||++++.+...
T Consensus 54 ~~t~~eLa~~l~i~~~tvs~~l~~Le~ 80 (150)
T 3fm5_A 54 GVNQRGVAATMGLDPSQIVGLVDELEE 80 (150)
T ss_dssp CCCSHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 458899999999999999998766443
No 223
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=33.74 E-value=8.4 Score=29.69 Aligned_cols=25 Identities=12% Similarity=0.228 Sum_probs=21.9
Q ss_pred cCCCcchhhhcccccccccchhhhH
Q 015432 122 SSGESLQIIGDLFGLNQSTVSQVTW 146 (407)
Q Consensus 122 a~g~s~~~la~~Fgis~sTvsr~i~ 146 (407)
..|.++..+|...|||++|++++.+
T Consensus 22 ~~glsq~~lA~~~gis~~~is~~e~ 46 (113)
T 2eby_A 22 PLDLKINELAELLHVHRNSVSALIN 46 (113)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4588999999999999999998753
No 224
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=33.72 E-value=5.3 Score=36.40 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=36.8
Q ss_pred CCCChhcceeeEEEeccCCCcchhhhcccccccccchhhhHHHHHHHH
Q 015432 106 KPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESME 153 (407)
Q Consensus 106 ~~l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~~al~ 153 (407)
..++..++-.+.|. +.|.++.+||...|||..||..++.+...-|.
T Consensus 196 ~~Lt~re~~vl~~~--~~G~s~~eIA~~l~is~~TV~~~~~~~~~kl~ 241 (265)
T 3qp6_A 196 MPLSQREYDIFHWM--SRGKTNWEIATILNISERTVKFHVANVIRKLN 241 (265)
T ss_dssp CCCCHHHHHHHHHH--HTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 45787776665554 79999999999999999999998877766553
No 225
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=33.71 E-value=4.7 Score=32.04 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=22.9
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
+.+..+|+..+|++++||++.+.+...
T Consensus 52 ~~t~~ela~~l~~~~~tvs~~l~~L~~ 78 (140)
T 2nnn_A 52 PCPQNQLGRLTAMDAATIKGVVERLDK 78 (140)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 678899999999999999998766544
No 226
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=33.62 E-value=7.7 Score=29.46 Aligned_cols=24 Identities=13% Similarity=0.249 Sum_probs=21.2
Q ss_pred CCCcchhhhcccccccccchhhhH
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVTW 146 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i~ 146 (407)
.|.++.++|...|||++|++++.+
T Consensus 30 ~gltq~~lA~~~gis~~~is~~e~ 53 (104)
T 3cec_A 30 LDINTANFAEILGVSNQTIQEVIN 53 (104)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 378889999999999999999764
No 227
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=33.55 E-value=33 Score=27.21 Aligned_cols=51 Identities=2% Similarity=0.001 Sum_probs=35.3
Q ss_pred hcCCCHHHHHHHHHHhhhhhhhhcCCCcCCCCCCCChhcceeeEEEeccCCCcchhhhcccccccccchhhhHHHHH
Q 015432 74 VFKISRKTFDYICSLVKEDLAARQSNFSFSNGKPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 74 ~frmsr~tF~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
.++++...|..|+.+..-. ... ..+.+...||..+|++.+||.+++.....
T Consensus 27 ~lgLt~~e~~vll~L~~~~-~~~-------------------------~~~ps~~~LA~~l~~s~~~V~~~l~~Le~ 77 (128)
T 2vn2_A 27 QLGLGEGELVLLLHMQSFF-EEG-------------------------VLFPTPAELAERMTVSAAECMEMVRRLLQ 77 (128)
T ss_dssp TTTCCHHHHHHHHHHHHHH-TTT-------------------------CSSCCHHHHHHTSSSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHH-hcC-------------------------CCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4479999998777665431 110 01356789999999999999987765443
No 228
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=33.34 E-value=24 Score=29.05 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=21.4
Q ss_pred CCcchhhhcccccccccchhhhHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRF 148 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~ 148 (407)
+.+..+|+..+|++++||++++.+.
T Consensus 59 ~~t~~eLa~~l~is~~tvs~~l~~L 83 (168)
T 2nyx_A 59 PINLATLATLLGVQPSATGRMVDRL 83 (168)
T ss_dssp SEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 5678899999999999999876554
No 229
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=33.33 E-value=4 Score=36.78 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=23.5
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
+.+..+|+..+|+++||+++++.....
T Consensus 23 ~~~~~ela~~~gl~~stv~r~l~~L~~ 49 (249)
T 1mkm_A 23 DVSVSEIAEKFNMSVSNAYKYMVVLEE 49 (249)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 467899999999999999999877655
No 230
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=32.44 E-value=12 Score=29.78 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=19.5
Q ss_pred cchhhhcccccccccchhhhHHHH
Q 015432 126 SLQIIGDLFGLNQSTVSQVTWRFV 149 (407)
Q Consensus 126 s~~~la~~Fgis~sTvsr~i~~~~ 149 (407)
+.+.||..||||++||.+.+....
T Consensus 39 s~~~La~~~~vSr~tvr~Al~~L~ 62 (125)
T 3neu_A 39 SVREMGVKLAVNPNTVSRAYQELE 62 (125)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457899999999999988765544
No 231
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=32.40 E-value=4 Score=35.04 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=33.1
Q ss_pred CCCChhcceeeEEEeccCCCcchhhhcccccccccchhhh
Q 015432 106 KPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 106 ~~l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i 145 (407)
..+++.++.......+..|.+...||..+|+|+++|++++
T Consensus 34 edL~piE~A~a~~~L~~~G~t~eeiA~~lG~s~s~V~~~L 73 (178)
T 1r71_A 34 NELTPREIADFIGRELAKGKKKGDIAKEIGKSPAFITQHV 73 (178)
T ss_dssp TCCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 4577777766666777779999999999999999998875
No 232
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=32.35 E-value=11 Score=27.67 Aligned_cols=25 Identities=8% Similarity=0.068 Sum_probs=21.5
Q ss_pred cCCCcchhhhcccccccccchhhhH
Q 015432 122 SSGESLQIIGDLFGLNQSTVSQVTW 146 (407)
Q Consensus 122 a~g~s~~~la~~Fgis~sTvsr~i~ 146 (407)
..|.++.++|...|||++|++++.+
T Consensus 24 ~~glsq~~lA~~~gis~~~is~~e~ 48 (91)
T 1x57_A 24 SKGLTQKDLATKINEKPQVIADYES 48 (91)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3588899999999999999998753
No 233
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=32.35 E-value=6.1 Score=35.74 Aligned_cols=43 Identities=12% Similarity=0.168 Sum_probs=30.8
Q ss_pred CChhcceeeEEEecc---CCCcchhhhcccccccccchhhhHHHHH
Q 015432 108 LSPNDMVAIALRRLS---SGESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 108 l~~~~ql~i~L~~La---~g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
+..-++.+-.|..|+ .+.+..+|+..+|+++||+++++.....
T Consensus 10 v~s~~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~ 55 (257)
T 2g7u_A 10 IQSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQK 55 (257)
T ss_dssp CHHHHHHHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 333344444455554 2567899999999999999999887665
No 234
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=32.12 E-value=28 Score=27.84 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=21.1
Q ss_pred CCcchhhhcccccccccchhhhHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRF 148 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~ 148 (407)
+.+...|+..++++++||++++.+.
T Consensus 51 ~~t~~ela~~l~~s~~tvs~~l~~L 75 (155)
T 1s3j_A 51 SLKVSEIAERMEVKPSAVTLMADRL 75 (155)
T ss_dssp EEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 5678899999999999999876554
No 235
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=31.97 E-value=4.3 Score=36.42 Aligned_cols=43 Identities=23% Similarity=0.276 Sum_probs=32.6
Q ss_pred CChhcceeeEEEeccCC-------------CcchhhhcccccccccchhhhHHHHH
Q 015432 108 LSPNDMVAIALRRLSSG-------------ESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 108 l~~~~ql~i~L~~La~g-------------~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
.+++++|+-+|..|+.. .+...||...|+++.||+|++.++.+
T Consensus 188 ~~~~~Rla~~Ll~l~~~~~~~~~~~~~~l~lt~~~lA~~lG~sr~tvsR~l~~L~~ 243 (260)
T 3kcc_A 188 LLVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLED 243 (260)
T ss_dssp CCHHHHHHHHHHHHHTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCceeecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 57778887777666432 35689999999999999998766543
No 236
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=31.93 E-value=13 Score=30.13 Aligned_cols=27 Identities=19% Similarity=0.116 Sum_probs=22.6
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
..++.+||..+|+|++||++.+.+..+
T Consensus 17 ~~~~~ela~~lg~s~~tv~~~l~~L~~ 43 (150)
T 2pn6_A 17 KYSLDEIAREIRIPKATLSYRIKKLEK 43 (150)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 367899999999999999988766543
No 237
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=31.91 E-value=24 Score=29.16 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=20.4
Q ss_pred CcchhhhcccccccccchhhhHHH
Q 015432 125 ESLQIIGDLFGLNQSTVSQVTWRF 148 (407)
Q Consensus 125 ~s~~~la~~Fgis~sTvsr~i~~~ 148 (407)
.+...||..||||++||.+.+.+.
T Consensus 28 ls~~eLa~~lgvSr~~vr~al~~L 51 (163)
T 2gqq_A 28 ISNVELSKRVGLSPTPCLERVRRL 51 (163)
T ss_dssp CCTTGGGTSSSCCTTTSSSTHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 467899999999999999876654
No 238
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=31.84 E-value=14 Score=29.88 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=21.6
Q ss_pred CCcchhhhcccccccccchhhhHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFV 149 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~ 149 (407)
..++.+||..+|+|++||++.+.+..
T Consensus 19 ~~s~~ela~~lg~s~~tv~~~l~~L~ 44 (144)
T 2cfx_A 19 RLSMRELGRKIKLSPPSVTERVRQLE 44 (144)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46789999999999999998765543
No 239
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=31.33 E-value=8.8 Score=29.48 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=22.9
Q ss_pred CCCcchhhhccc-ccccccchhhhHHHHH
Q 015432 123 SGESLQIIGDLF-GLNQSTVSQVTWRFVE 150 (407)
Q Consensus 123 ~g~s~~~la~~F-gis~sTvsr~i~~~~~ 150 (407)
.+.++.+|+..+ |+|++|+++.+.+..+
T Consensus 26 ~~~~~~eLa~~l~~is~~tls~~L~~Le~ 54 (107)
T 2hzt_A 26 GKKRTSELKRLMPNITQKMLTQQLRELEA 54 (107)
T ss_dssp CCBCHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 347899999999 9999999987765443
No 240
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=31.19 E-value=8.6 Score=26.93 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=18.7
Q ss_pred cchhhhcccccccccchhhhHH
Q 015432 126 SLQIIGDLFGLNQSTVSQVTWR 147 (407)
Q Consensus 126 s~~~la~~Fgis~sTvsr~i~~ 147 (407)
+..++|..+|||.+|+.+++..
T Consensus 4 t~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 4 NKKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp EHHHHHHHTTCCHHHHHHHTTT
T ss_pred CHHHHHHHHCcCHHHHHHHHHC
Confidence 4568999999999999998754
No 241
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=31.04 E-value=15 Score=29.38 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=22.4
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
..++.+||..+|+|++|+++.+.+...
T Consensus 18 ~~~~~ela~~lg~s~~tv~~~l~~L~~ 44 (141)
T 1i1g_A 18 RTPFTEIAKKLGISETAVRKRVKALEE 44 (141)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 457899999999999999987766543
No 242
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=30.98 E-value=32 Score=30.84 Aligned_cols=27 Identities=7% Similarity=0.193 Sum_probs=22.7
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
+.+..+||..+|+++|||++.+.+..+
T Consensus 166 ~~s~~eLA~~lglsksTv~r~L~~Le~ 192 (244)
T 2wte_A 166 GTGITELAKMLDKSEKTLINKIAELKK 192 (244)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 567789999999999999998766544
No 243
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=30.96 E-value=13 Score=29.10 Aligned_cols=29 Identities=7% Similarity=0.113 Sum_probs=23.5
Q ss_pred CCCcchhhhcccccccccchhhhHHHHHH
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVTWRFVES 151 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i~~~~~a 151 (407)
...+..+|+..+|+|++||++.+....++
T Consensus 30 ~~~~~~eLa~~l~is~~tvs~hL~~L~~~ 58 (118)
T 3f6o_A 30 GPATVSELAKPFDMALPSFMKHIHFLEDS 58 (118)
T ss_dssp CCEEHHHHHTTCCSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHC
Confidence 34578899999999999999987765543
No 244
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=30.56 E-value=15 Score=29.88 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=22.6
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
..++.+||..+|+|++||++.+.+..+
T Consensus 21 ~~s~~ela~~lg~s~~tv~~~l~~L~~ 47 (151)
T 2cyy_A 21 KAPLREISKITGLAESTIHERIRKLRE 47 (151)
T ss_dssp TCCHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 457899999999999999988766544
No 245
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=30.50 E-value=5.3 Score=32.82 Aligned_cols=26 Identities=23% Similarity=0.208 Sum_probs=21.6
Q ss_pred CCcchhhhcccccccccchhhhHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFV 149 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~ 149 (407)
+.+...|+..+|++++||++++.+..
T Consensus 66 ~~t~~ela~~l~is~~tvs~~l~~Le 91 (162)
T 3cjn_A 66 GLPIGTLGIFAVVEQSTLSRALDGLQ 91 (162)
T ss_dssp SEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCChhHHHHHHHHHH
Confidence 46788999999999999998776544
No 246
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=30.49 E-value=15 Score=30.00 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=22.1
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
+.+...++..+|||++||++.+.+...
T Consensus 54 ~~~~~~la~~l~vs~~tvs~~l~~Le~ 80 (155)
T 2h09_A 54 EARQVDMAARLGVSQPTVAKMLKRLAT 80 (155)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 456789999999999999998766543
No 247
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=30.46 E-value=16 Score=29.74 Aligned_cols=27 Identities=11% Similarity=0.218 Sum_probs=22.5
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
..++.+||..+|+|++||++.+.+..+
T Consensus 22 ~~s~~ela~~lg~s~~tv~~~l~~L~~ 48 (152)
T 2cg4_A 22 RTAYAELAKQFGVSPETIHVRVEKMKQ 48 (152)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 467889999999999999988766544
No 248
>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.236.1.1
Probab=30.32 E-value=11 Score=29.86 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=22.9
Q ss_pred CCCcchhhhcccccccccchhhhHH
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVTWR 147 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i~~ 147 (407)
.|.++..+|...|||++|++++-+.
T Consensus 4 ~glTQ~eLA~~~Gvs~~~is~~E~G 28 (122)
T 1nr3_A 4 RGWSQKKIARELKTTRQNVSAIERK 28 (122)
T ss_dssp CSCSSCSTHHHHHHCCSSSCCHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 5889999999999999999998765
No 249
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=30.30 E-value=15 Score=29.95 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=21.0
Q ss_pred CCcchhhhcccccccccchhhhHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRF 148 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~ 148 (407)
..++.+||..+|+|++||++.+.+.
T Consensus 21 ~~s~~ela~~lg~s~~tv~~~l~~L 45 (150)
T 2w25_A 21 RATLSELATRAGLSVSAVQSRVRRL 45 (150)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4678999999999999999876543
No 250
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=30.27 E-value=11 Score=28.50 Aligned_cols=28 Identities=29% Similarity=0.224 Sum_probs=24.5
Q ss_pred CCcchhhhcccccccccchhhhHHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVES 151 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~a 151 (407)
+.+..+++..+|+|++|+++.+....++
T Consensus 41 ~~~~~ela~~l~is~stvs~hL~~L~~~ 68 (99)
T 2zkz_A 41 ALNVTQIIQILKLPQSTVSQHLCKMRGK 68 (99)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHBTT
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4678899999999999999999877666
No 251
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=30.14 E-value=9.6 Score=31.11 Aligned_cols=26 Identities=19% Similarity=0.242 Sum_probs=22.8
Q ss_pred ccCCCcchhhhcccccccccchhhhH
Q 015432 121 LSSGESLQIIGDLFGLNQSTVSQVTW 146 (407)
Q Consensus 121 La~g~s~~~la~~Fgis~sTvsr~i~ 146 (407)
...|.++.++|...|||+++++++.+
T Consensus 78 ~~~glTq~elA~~lGis~s~is~~E~ 103 (141)
T 3kxa_A 78 MKKGFTQSELATAAGLPQPYLSRIEN 103 (141)
T ss_dssp HHTTCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 45688999999999999999999754
No 252
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=29.94 E-value=15 Score=26.21 Aligned_cols=32 Identities=3% Similarity=0.162 Sum_probs=24.0
Q ss_pred CCCChhcceeeEEEeccCCCcchhhhcccccccccchhhhH
Q 015432 106 KPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTW 146 (407)
Q Consensus 106 ~~l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~ 146 (407)
..+|..++..++ ...+|..||||++++.+.+.
T Consensus 7 ~~~p~~~K~~LT---------i~EaAeylgIg~~~l~~L~~ 38 (70)
T 1y6u_A 7 TDIPIWERYTLT---------IEEASKYFRIGENKLRRLAE 38 (70)
T ss_dssp --CCTTTSSEEE---------HHHHHHHTCSCHHHHHHHHH
T ss_pred ccccccccceeC---------HHHHHHHHCcCHHHHHHHHH
Confidence 347777776665 48899999999999988653
No 253
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=29.93 E-value=11 Score=28.06 Aligned_cols=24 Identities=33% Similarity=0.224 Sum_probs=21.0
Q ss_pred cCCCcchhhhcccccccccchhhh
Q 015432 122 SSGESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 122 a~g~s~~~la~~Fgis~sTvsr~i 145 (407)
..|.++..+|...|||++|++++.
T Consensus 15 ~~gltq~~lA~~~gis~~~is~~e 38 (99)
T 2l49_A 15 SEYLSRQQLADLTGVPYGTLSYYE 38 (99)
T ss_dssp HTTCCHHHHHHHHCCCHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 357889999999999999999875
No 254
>3m8j_A FOCB protein; all-alpha, helix-turn-helix, transcription; 1.40A {Escherichia coli}
Probab=29.92 E-value=26 Score=27.42 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=29.2
Q ss_pred hcceeeEEEeccCCCcchhhhcccccccccchhhhHHHH
Q 015432 111 NDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFV 149 (407)
Q Consensus 111 ~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~ 149 (407)
++-++..=-||-.|.+-..++..+||++|-.++.+.+.-
T Consensus 47 ekII~ALrdyLV~G~srkeaCe~~gV~~syfS~~L~rL~ 85 (111)
T 3m8j_A 47 DRVILAMKDYLVSGHSRKDVCEKYQMNNGYFSTTLGRLT 85 (111)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHhCCCHHHHHHHHHHHH
Confidence 333333334566799999999999999999998876553
No 255
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=29.89 E-value=13 Score=25.15 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=18.8
Q ss_pred Ccchhhhccc-----ccccccchhhhH
Q 015432 125 ESLQIIGDLF-----GLNQSTVSQVTW 146 (407)
Q Consensus 125 ~s~~~la~~F-----gis~sTvsr~i~ 146 (407)
.+..+|+..| +||.+||+|.+.
T Consensus 20 ~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 20 ETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp CSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 4567888899 999999999876
No 256
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=29.83 E-value=18 Score=29.43 Aligned_cols=27 Identities=4% Similarity=0.156 Sum_probs=22.4
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
..++.+||..+|+|++||++.+.+..+
T Consensus 23 ~~s~~ela~~lg~s~~tv~~~l~~L~~ 49 (151)
T 2dbb_A 23 RLTYRELADILNTTRQRIARRIDKLKK 49 (151)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 467899999999999999987766543
No 257
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=29.72 E-value=5.2 Score=32.66 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=22.1
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
+.+..+|+..++++++||++++.+...
T Consensus 58 ~~t~~ela~~l~is~~tvs~~l~~Le~ 84 (154)
T 2eth_A 58 PKKMKEIAEFLSTTKSNVTNVVDSLEK 84 (154)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 457789999999999999987765444
No 258
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=29.35 E-value=4.3 Score=29.54 Aligned_cols=26 Identities=12% Similarity=0.110 Sum_probs=19.3
Q ss_pred CCCcchhhhcccc----cccccchhhhHHH
Q 015432 123 SGESLQIIGDLFG----LNQSTVSQVTWRF 148 (407)
Q Consensus 123 ~g~s~~~la~~Fg----is~sTvsr~i~~~ 148 (407)
.+.+..+|+..++ ++.+||++++.+.
T Consensus 22 ~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL 51 (82)
T 1p6r_A 22 SSINTNEVIKELSKTSTWSPKTIQTMLLRL 51 (82)
T ss_dssp SSEEHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence 3567788998886 6888888766543
No 259
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=29.33 E-value=14 Score=29.36 Aligned_cols=23 Identities=17% Similarity=0.075 Sum_probs=19.1
Q ss_pred cchhhhcccccccccchhhhHHH
Q 015432 126 SLQIIGDLFGLNQSTVSQVTWRF 148 (407)
Q Consensus 126 s~~~la~~Fgis~sTvsr~i~~~ 148 (407)
+.+.|+..||||++||.+.+...
T Consensus 37 se~~La~~~~vSr~tvr~Al~~L 59 (126)
T 3by6_A 37 SVRETALQEKINPNTVAKAYKEL 59 (126)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 45789999999999998876554
No 260
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=29.33 E-value=22 Score=28.75 Aligned_cols=80 Identities=10% Similarity=-0.001 Sum_probs=45.2
Q ss_pred CChhHHHhhcCCCHHHHHHHHHHhhhhhhhhcCCCcCCC-CCCCChhcceeeEEEecc--CCCcchhhhccc--------
Q 015432 66 KTSKNFESVFKISRKTFDYICSLVKEDLAARQSNFSFSN-GKPLSPNDMVAIALRRLS--SGESLQIIGDLF-------- 134 (407)
Q Consensus 66 ~~d~~F~~~frmsr~tF~~L~~~l~~~~~~~~~~~~~~~-~~~l~~~~ql~i~L~~La--~g~s~~~la~~F-------- 134 (407)
.+-.+--..|++++.|+...+............ ...++ ...++.+..- ..+.++. ...+...|+..+
T Consensus 49 ~s~~~iA~~lgis~~TV~rw~~~~~~~G~~~~~-~r~gr~~~~~~~~~~~-~I~~~~~~~~~~s~~~i~~~l~~~~~~~~ 126 (149)
T 1k78_A 49 VRPCDISRQLRVSHGCVSKILGRYYETGSIKPG-VIGGSKPKVATPKVVE-KIAEYKRQNPTMFAWEIRDRLLAERVCDN 126 (149)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHSCCCCC-CCCCCCCSSSCHHHHH-HHHHHHHHCTTCCHHHHHHHHHHTTSSCT
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHcCCCCcc-CCCCCCCCCCCHHHHH-HHHHHHHhCcchhHHHHHHHHHHhccccc
Confidence 355677788999999998888776543221110 01111 2335543222 2222332 235667777665
Q ss_pred c--cccccchhhhHH
Q 015432 135 G--LNQSTVSQVTWR 147 (407)
Q Consensus 135 g--is~sTvsr~i~~ 147 (407)
| +|.+||++++.+
T Consensus 127 g~~~S~sTV~r~L~~ 141 (149)
T 1k78_A 127 DTVPSVSSINRIIRT 141 (149)
T ss_dssp TTSCCHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHH
Confidence 5 788888887654
No 261
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=29.16 E-value=12 Score=28.74 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=21.1
Q ss_pred CCCcchhhhcccccccccchhhhH
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVTW 146 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i~ 146 (407)
.|.++..+|...|||++|++++-+
T Consensus 21 ~glsq~~lA~~~gis~~~i~~~e~ 44 (114)
T 3op9_A 21 HGLKNHQIAELLNVQTRTVAYYMS 44 (114)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 488899999999999999998653
No 262
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=29.07 E-value=7.3 Score=33.98 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=23.0
Q ss_pred ccCCCcchhhhcccccccccchhhhH
Q 015432 121 LSSGESLQIIGDLFGLNQSTVSQVTW 146 (407)
Q Consensus 121 La~g~s~~~la~~Fgis~sTvsr~i~ 146 (407)
+..|.++..||..+|||.+|+++++.
T Consensus 172 ~~~G~s~~~Ia~~l~is~~tv~r~l~ 197 (209)
T 2r0q_C 172 LEEGQAISKIAKEVNITRQTVYRIKH 197 (209)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 45799999999999999999998764
No 263
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=28.94 E-value=18 Score=28.77 Aligned_cols=28 Identities=4% Similarity=0.011 Sum_probs=23.3
Q ss_pred CCCcchhhhcccccccccchhhhHHHHH
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
.+.+...|+..+|++++||++++.+...
T Consensus 49 ~~~~~~~la~~l~i~~~~vs~~l~~Le~ 76 (147)
T 2hr3_A 49 GDVTPSELAAAERMRSSNLAALLRELER 76 (147)
T ss_dssp SCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 4678899999999999999998766544
No 264
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=28.92 E-value=5.3 Score=33.14 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=23.2
Q ss_pred CCcchhhhcccccccccchhhhHHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVES 151 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~a 151 (407)
..+...|+..+|++++||++.+....++
T Consensus 71 ~~t~~eLa~~lgls~stvs~hL~~L~~a 98 (151)
T 3f6v_A 71 EQTVNNLAAHFPASRSAISQHLRVLTEA 98 (151)
T ss_dssp CEEHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4567899999999999999988766554
No 265
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=28.73 E-value=12 Score=28.48 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=21.3
Q ss_pred cCCCcchhhhcccccccccchhhh
Q 015432 122 SSGESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 122 a~g~s~~~la~~Fgis~sTvsr~i 145 (407)
..|.++..+|...|||++|++++.
T Consensus 12 ~~gltq~~lA~~~gis~~~i~~~e 35 (111)
T 1b0n_A 12 EKGYSLSELAEKAGVAKSYLSSIE 35 (111)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 358899999999999999999875
No 266
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=28.47 E-value=8.9 Score=29.12 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=20.5
Q ss_pred CCCcchhhhcccccccccchhhh
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i 145 (407)
.|.++.++|...||+++|++++.
T Consensus 40 ~gltq~elA~~~gis~~~is~iE 62 (99)
T 3g5g_A 40 KGMTQEDLAYKSNLDRTYISGIE 62 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 37889999999999999999874
No 267
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=28.06 E-value=11 Score=32.80 Aligned_cols=64 Identities=14% Similarity=0.039 Sum_probs=42.1
Q ss_pred CChhcceeeEEEecc-------------CCCcchhhhcccccccccchhhhHHHHHH-HHHhccccccCCChhhHHHHH
Q 015432 108 LSPNDMVAIALRRLS-------------SGESLQIIGDLFGLNQSTVSQVTWRFVES-MEERGLHHLQWPSKETEMEDI 172 (407)
Q Consensus 108 l~~~~ql~i~L~~La-------------~g~s~~~la~~Fgis~sTvsr~i~~~~~a-l~~~~~~~i~~P~~~~~~~~i 172 (407)
.+++++|+.+|..|+ ...+..+||...|+++.|++|++.++.+. +.+.....|...+.+ .+.++
T Consensus 151 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~~-~L~~~ 228 (232)
T 2gau_A 151 KHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLSTFVSERMLALDGKRIKIIDCD-RLQKT 228 (232)
T ss_dssp SCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEETTEEEESCHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeCCCEEEEeCHH-HHHHH
Confidence 678889988885432 23567899999999999999988776432 222222345555554 44443
No 268
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=27.91 E-value=17 Score=30.02 Aligned_cols=26 Identities=8% Similarity=-0.001 Sum_probs=21.8
Q ss_pred CcchhhhcccccccccchhhhHHHHH
Q 015432 125 ESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 125 ~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
.++.+||..+|+|++||++.+.+..+
T Consensus 25 ~s~~ela~~lg~s~~tv~~~l~~L~~ 50 (162)
T 2p5v_A 25 LTNVELSERVALSPSPCLRRLKQLED 50 (162)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 47899999999999999988766543
No 269
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=27.88 E-value=7.9 Score=32.91 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=22.8
Q ss_pred eccCCCcchhhhcccccccccchhhh
Q 015432 120 RLSSGESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 120 ~La~g~s~~~la~~Fgis~sTvsr~i 145 (407)
+..+|.++..+|...|||++|+++|-
T Consensus 99 R~~~glTQ~elA~~LGvsr~tis~yE 124 (170)
T 2auw_A 99 MHRNNLSLTTAAEALGISRRMVSYYR 124 (170)
T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHhCCCHHHHHHHH
Confidence 45679999999999999999999864
No 270
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=27.85 E-value=18 Score=28.30 Aligned_cols=27 Identities=19% Similarity=0.023 Sum_probs=21.9
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
..+..+|+..+|+|++||++.+.....
T Consensus 34 ~~~~~eLa~~lgis~stvs~~L~~L~~ 60 (118)
T 2jsc_A 34 VCYPGQLAAHLGLTRSNVSNHLSCLRG 60 (118)
T ss_dssp CCSTTTHHHHHSSCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 356789999999999999998766543
No 271
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=27.77 E-value=10 Score=29.34 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=22.5
Q ss_pred ccCCCcchhhhcccccccccchhhhH
Q 015432 121 LSSGESLQIIGDLFGLNQSTVSQVTW 146 (407)
Q Consensus 121 La~g~s~~~la~~Fgis~sTvsr~i~ 146 (407)
...|.++..+|...|||++|++++-+
T Consensus 33 ~~~gltq~elA~~~gis~~~is~~E~ 58 (111)
T 3mlf_A 33 TDYGLTQKELGDLFKVSSRTIQNMEK 58 (111)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 34689999999999999999998754
No 272
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=27.77 E-value=11 Score=29.36 Aligned_cols=25 Identities=12% Similarity=0.043 Sum_probs=22.0
Q ss_pred cCCCcchhhhcccccccccchhhhH
Q 015432 122 SSGESLQIIGDLFGLNQSTVSQVTW 146 (407)
Q Consensus 122 a~g~s~~~la~~Fgis~sTvsr~i~ 146 (407)
..|.++.++|...|||+++++++-+
T Consensus 18 ~~glSq~eLA~~~gis~~~is~iE~ 42 (112)
T 2wus_R 18 ERRITLLDASLFTNINPSKLKRIEE 42 (112)
T ss_dssp TTTCCHHHHHHHSSCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 4588999999999999999998754
No 273
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=27.74 E-value=5.3 Score=35.52 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=22.0
Q ss_pred CCcc--hhhhcccccccccchhhhHHHHH
Q 015432 124 GESL--QIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~--~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
|.+. ..||..++++++||++.+.+...
T Consensus 22 ~~~~~~~~La~~l~vs~~tvs~~l~~Le~ 50 (230)
T 1fx7_A 22 GVTPLRARIAERLDQSGPTVSQTVSRMER 50 (230)
T ss_dssp TSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4455 89999999999999998776554
No 274
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=27.72 E-value=15 Score=29.54 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=24.6
Q ss_pred CCCcchhhhcccccccccchhhhHHHHH
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
.|.+...||..||+|..+|.+|+.+.-.
T Consensus 91 ~G~n~~eLArkYgLSer~I~~Ii~~~r~ 118 (129)
T 1rr7_A 91 NGRNVSELTTRYGVTFNTVYKAIRRMRR 118 (129)
T ss_dssp CSSCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4889999999999999999999876544
No 275
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=27.05 E-value=9.8 Score=29.49 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.6
Q ss_pred CCCcchhhhcccccccccchhhh
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i 145 (407)
.|.++.++|...|||++|++++-
T Consensus 33 ~gltq~elA~~~gis~~~is~~E 55 (114)
T 3vk0_A 33 KGWSQEELARQCGLDRTYVSAVE 55 (114)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 47889999999999999999874
No 276
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=26.74 E-value=13 Score=28.56 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=20.4
Q ss_pred CCCcchhhhcccccccccchhhh
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i 145 (407)
.|.++.++|...|||++|+++|.
T Consensus 48 ~glsq~elA~~~gis~~~is~~E 70 (107)
T 2jvl_A 48 PTMTQAELGKEIGETAATVASYE 70 (107)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 47889999999999999998864
No 277
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=26.52 E-value=11 Score=29.58 Aligned_cols=41 Identities=17% Similarity=0.305 Sum_probs=29.5
Q ss_pred CCCcchhhhcccccccccchhhhHHHHHHHHHhccccccCCChhhHHHHHHHHH
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVTWRFVESMEERGLHHLQWPSKETEMEDIKSKF 176 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i~~~~~al~~~~~~~i~~P~~~~~~~~i~~~f 176 (407)
.|.++..+|...|||++|++++-+. . .-|+.+ .+..++..|
T Consensus 24 ~glsq~~lA~~~gis~~~is~~E~g---------~---~~p~~~-~l~~ia~~l 64 (126)
T 3ivp_A 24 QGLTREQVGAMIEIDPRYLTNIENK---------G---QHPSLQ-VLYDLVSLL 64 (126)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHS---------C---CCCCHH-HHHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHCC---------C---CCCCHH-HHHHHHHHH
Confidence 4888999999999999999987531 1 235555 556666554
No 278
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=26.10 E-value=7.7 Score=35.15 Aligned_cols=43 Identities=16% Similarity=0.093 Sum_probs=30.8
Q ss_pred CChhcceeeEEEecc---CCCcchhhhcccccccccchhhhHHHHH
Q 015432 108 LSPNDMVAIALRRLS---SGESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 108 l~~~~ql~i~L~~La---~g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
+..-++.+-.|..|+ .+.+..+|+..+|+++||++|++.....
T Consensus 19 v~sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~ 64 (260)
T 2o0y_A 19 VRSVTRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCA 64 (260)
T ss_dssp CHHHHHHHHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 333444444455554 3678899999999999999998876654
No 279
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=25.41 E-value=23 Score=30.15 Aligned_cols=25 Identities=8% Similarity=-0.001 Sum_probs=20.9
Q ss_pred CcchhhhcccccccccchhhhHHHH
Q 015432 125 ESLQIIGDLFGLNQSTVSQVTWRFV 149 (407)
Q Consensus 125 ~s~~~la~~Fgis~sTvsr~i~~~~ 149 (407)
.+..+||..||||++||++.+....
T Consensus 37 ~s~~eLa~~l~vS~~Ti~rdi~~L~ 61 (187)
T 1j5y_A 37 VSGAQLAEELSVSRQVIVQDIAYLR 61 (187)
T ss_dssp BCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 5678999999999999999776543
No 280
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=25.06 E-value=15 Score=29.00 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.7
Q ss_pred CCCcchhhhcccccccccchhhh
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i 145 (407)
.|.++.++|...|||++|++++.
T Consensus 52 ~glTQ~eLA~~lGis~~~Is~iE 74 (120)
T 2o38_A 52 ARLSQAAAAARLGINQPKVSALR 74 (120)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 47889999999999999999865
No 281
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=24.94 E-value=13 Score=31.77 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=31.6
Q ss_pred EEEeccCCCcchhhhcccccccccchhhhHHHHHHHH
Q 015432 117 ALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESME 153 (407)
Q Consensus 117 ~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~~al~ 153 (407)
.|.+|+.|.+...||...++|..||..++.+...-|.
T Consensus 162 vl~~l~~g~s~~~Ia~~l~is~~TV~~hi~~i~~Kl~ 198 (215)
T 1a04_A 162 ILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMK 198 (215)
T ss_dssp HHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 4667889999999999999999999998887766653
No 282
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=24.63 E-value=16 Score=28.25 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=20.7
Q ss_pred CCCcchhhhcccccccccchhhh
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i 145 (407)
.|.++.++|...|||++|++++-
T Consensus 40 ~glsq~~lA~~~gis~~~is~~E 62 (117)
T 3f52_A 40 KGVTLRELAEASRVSPGYLSELE 62 (117)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 48889999999999999999875
No 283
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=24.51 E-value=23 Score=26.85 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=21.5
Q ss_pred CCcchhhhcccccccccchhhhHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRF 148 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~ 148 (407)
..+..+||..+|+|.+++++.+.+.
T Consensus 21 ~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 21 GMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4566899999999999999998766
No 284
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=24.51 E-value=18 Score=31.45 Aligned_cols=23 Identities=35% Similarity=0.270 Sum_probs=20.6
Q ss_pred CCCcchhhhcccccccccchhhh
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVT 145 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i 145 (407)
.|.++.++|...|||+||+|++.
T Consensus 42 ~gitQ~~lA~~~GiSqs~ISr~l 64 (194)
T 1ic8_A 42 HNIPQREVVDTTGLNQSHLSQHL 64 (194)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHH
T ss_pred cCCCHHHHHHHhCCChHHHHHHH
Confidence 37888999999999999999984
No 285
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=24.22 E-value=78 Score=25.43 Aligned_cols=53 Identities=2% Similarity=-0.021 Sum_probs=38.2
Q ss_pred HhhcCCCHHHHHHHHHHhhhhhhhhcCCCcCCCCCCCChhcceeeEEEeccCCCcchhhhcccccccccchhhhHHHHH
Q 015432 72 ESVFKISRKTFDYICSLVKEDLAARQSNFSFSNGKPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 72 ~~~frmsr~tF~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
...+++|...|..|+.+..-.-.. . .+.+...||..+|++.++|.+++...+.
T Consensus 25 y~~LgLs~~E~~lLl~L~~~~~~g----------~----------------~~ps~~~LA~~~~~s~~~v~~~L~~L~~ 77 (135)
T 2v79_A 25 YKQLGLNETELILLLKIKMHLEKG----------S----------------YFPTPNQLQEGMSISVEECTNRLRMFIQ 77 (135)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHTTT----------C----------------CSCCHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHhcC----------C----------------CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 346789999998888776631111 0 1456789999999999999888766554
No 286
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=24.15 E-value=22 Score=29.85 Aligned_cols=27 Identities=11% Similarity=0.096 Sum_probs=22.4
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
..++.+||..+|+|++||++.+.+..+
T Consensus 31 ~~s~~eLA~~lglS~~tv~~~l~~L~~ 57 (171)
T 2ia0_A 31 RLTISELSEQLKKPESTIHFRIKKLQE 57 (171)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 467899999999999999987766543
No 287
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=23.06 E-value=14 Score=29.68 Aligned_cols=28 Identities=7% Similarity=0.163 Sum_probs=23.2
Q ss_pred CCcchhhhccc-ccccccchhhhHHHHHH
Q 015432 124 GESLQIIGDLF-GLNQSTVSQVTWRFVES 151 (407)
Q Consensus 124 g~s~~~la~~F-gis~sTvsr~i~~~~~a 151 (407)
+.++.+|+..+ ||+++|+++.+.+....
T Consensus 48 ~~~~~eLa~~l~gis~~tls~~L~~Le~~ 76 (131)
T 1yyv_A 48 THRFSDLRRXMGGVSEXMLAQSLQALEQD 76 (131)
T ss_dssp CEEHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhccCCHHHHHHHHHHHHHC
Confidence 46889999999 79999999988765543
No 288
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=22.98 E-value=8.1 Score=34.49 Aligned_cols=41 Identities=22% Similarity=0.170 Sum_probs=31.5
Q ss_pred CCCChhcceeeEEEeccCCCcchhhhcccccccccchhhhH
Q 015432 106 KPLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTW 146 (407)
Q Consensus 106 ~~l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~ 146 (407)
..+++.++.......+..|.+...||..+|+|+++|++++.
T Consensus 116 ~~L~~~E~a~~~~~l~~~g~t~~~iA~~lG~s~~~V~~~l~ 156 (230)
T 1vz0_A 116 EDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALR 156 (230)
T ss_dssp TTCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 44666665555545557889999999999999999988763
No 289
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=22.95 E-value=13 Score=30.40 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=23.0
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
..++.+|+..+|||++|+++.+.+..+
T Consensus 37 ~~~~~eLa~~lgis~~tls~~L~~Le~ 63 (146)
T 2f2e_A 37 LTRFGEFQKSLGLAKNILAARLRNLVE 63 (146)
T ss_dssp CCSHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 478999999999999999998766544
No 290
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=22.44 E-value=28 Score=26.73 Aligned_cols=28 Identities=7% Similarity=0.079 Sum_probs=23.6
Q ss_pred CCCcchhhhccc-ccccccchhhhHHHHH
Q 015432 123 SGESLQIIGDLF-GLNQSTVSQVTWRFVE 150 (407)
Q Consensus 123 ~g~s~~~la~~F-gis~sTvsr~i~~~~~ 150 (407)
.+.++.+|+..+ |++++|+++.+.+...
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~ 62 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEK 62 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 457889999999 9999999998766544
No 291
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=22.38 E-value=25 Score=26.60 Aligned_cols=25 Identities=12% Similarity=0.147 Sum_probs=21.4
Q ss_pred CCcchhhhcccccccccchhhhHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRF 148 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~ 148 (407)
..+..+||..+|+|.+++++.+.+.
T Consensus 18 ~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 18 PITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4456899999999999999998775
No 292
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=22.33 E-value=33 Score=18.65 Aligned_cols=13 Identities=46% Similarity=1.321 Sum_probs=9.5
Q ss_pred CCCCCchHHHhhh
Q 015432 44 QPQPLDWWDNFSR 56 (407)
Q Consensus 44 ~~~~~~ww~~~~~ 56 (407)
++.-..||++|.+
T Consensus 13 kpwlvgwwdqfkr 25 (26)
T 1loi_A 13 KPWLVGWWDQFKR 25 (26)
T ss_dssp CTTGGGGHHHHTC
T ss_pred CchhhhhHHHhcc
Confidence 4556789999854
No 293
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=22.18 E-value=24 Score=29.60 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=22.1
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
..++.+||..+|+|++||++.+.+..+
T Consensus 41 ~~s~~eLA~~lglS~~tv~~rl~~L~~ 67 (171)
T 2e1c_A 41 KAPLREISKITGLAESTIHERIRKLRE 67 (171)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 357889999999999999987766543
No 294
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=22.15 E-value=6.2 Score=30.84 Aligned_cols=27 Identities=15% Similarity=0.056 Sum_probs=22.1
Q ss_pred CCcchhhhcccc----cccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFG----LNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fg----is~sTvsr~i~~~~~ 150 (407)
+.+..+|+..++ ++++||++++.+...
T Consensus 24 ~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~ 54 (123)
T 1okr_A 24 YASANNIIEEIQMQKDWSPKTIRTLITRLYK 54 (123)
T ss_dssp SEEHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHhccCCCcHhhHHHHHHHHHH
Confidence 566789999998 889999998877655
No 295
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=21.99 E-value=33 Score=26.53 Aligned_cols=87 Identities=15% Similarity=0.038 Sum_probs=53.0
Q ss_pred HHHhhhhcCCCCCCCCChhHHHhhcCCCHHHHHHHHHHhhhhhhhhcCCCcCCCCCCCChhcceeeEEEecc-CCCcchh
Q 015432 51 WDNFSRRISGPLFGSKTSKNFESVFKISRKTFDYICSLVKEDLAARQSNFSFSNGKPLSPNDMVAIALRRLS-SGESLQI 129 (407)
Q Consensus 51 w~~~~~r~~~~~~~~~~d~~F~~~frmsr~tF~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~ql~i~L~~La-~g~s~~~ 129 (407)
-..+..-+...+....+-++.-..++||+.+|..++... . .... ..-...++-.+...|. ++.+..+
T Consensus 9 ~~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~-G-~s~~----------~~~~~~Rl~~A~~lL~~~~~si~e 76 (120)
T 3mkl_A 9 RTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLREE-E-TSYS----------QLLTECRMQRALQLIVIHGFSIKR 76 (120)
T ss_dssp HHHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHHT-T-CCHH----------HHHHHHHHHHHHHHHTSTTCCHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHHc-C-CCHH----------HHHHHHHHHHHHHHHHcCCCCHHH
Confidence 333333333334445677888999999999988887653 1 1110 0111233444444454 6788999
Q ss_pred hhccccc-ccccchhhhHHHH
Q 015432 130 IGDLFGL-NQSTVSQVTWRFV 149 (407)
Q Consensus 130 la~~Fgi-s~sTvsr~i~~~~ 149 (407)
||...|- +.+..++.|.+..
T Consensus 77 IA~~~Gf~~~s~F~r~Fk~~~ 97 (120)
T 3mkl_A 77 VAVSCGYHSVSYFIYVFRNYY 97 (120)
T ss_dssp HHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHH
Confidence 9999997 4777777776543
No 296
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=21.93 E-value=7.5 Score=31.40 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=21.9
Q ss_pred CCCcchhhhcccc----cccccchhhhHHHHH
Q 015432 123 SGESLQIIGDLFG----LNQSTVSQVTWRFVE 150 (407)
Q Consensus 123 ~g~s~~~la~~Fg----is~sTvsr~i~~~~~ 150 (407)
.+.+..+|+..++ ++.+||++++.+...
T Consensus 23 ~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~ 54 (138)
T 2g9w_A 23 EPQTVRQVHEALSARRDLAYTTVMAVLQRLAK 54 (138)
T ss_dssp SCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 3577889999997 899999887766543
No 297
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=21.90 E-value=16 Score=28.36 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=21.1
Q ss_pred chhhhccc-ccccccchhhhHHHHHH
Q 015432 127 LQIIGDLF-GLNQSTVSQVTWRFVES 151 (407)
Q Consensus 127 ~~~la~~F-gis~sTvsr~i~~~~~a 151 (407)
+.+|+..+ |||++|+++.+.+...+
T Consensus 45 ~~eL~~~l~gis~~~ls~~L~~Le~~ 70 (111)
T 3df8_A 45 FNDIRSSIPGISSTILSRRIKDLIDS 70 (111)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHC
Confidence 89999999 99999999987665443
No 298
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=21.82 E-value=29 Score=29.72 Aligned_cols=22 Identities=14% Similarity=0.054 Sum_probs=18.1
Q ss_pred CcchhhhcccccccccchhhhH
Q 015432 125 ESLQIIGDLFGLNQSTVSQVTW 146 (407)
Q Consensus 125 ~s~~~la~~Fgis~sTvsr~i~ 146 (407)
.+.++||..||++.+||++.+.
T Consensus 25 ~s~~eia~~lgl~~~tv~~~l~ 46 (196)
T 3k2z_A 25 PSVREIARRFRITPRGALLHLI 46 (196)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHcCCCcHHHHHHHH
Confidence 5689999999999998776543
No 299
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=21.80 E-value=32 Score=29.38 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=32.1
Q ss_pred CChhcceeeEEEeccC-----------CCcchhhhcccccccccchhhhHHHHH
Q 015432 108 LSPNDMVAIALRRLSS-----------GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 108 l~~~~ql~i~L~~La~-----------g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
.+++++|+-+|..++. ..+..+||...|+++.|++|++.++.+
T Consensus 151 ~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 204 (227)
T 3dkw_A 151 KNATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLSIQPETFSRIMHRLGD 204 (227)
T ss_dssp HHHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4567777776655432 356789999999999999998876544
No 300
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=21.76 E-value=22 Score=29.08 Aligned_cols=23 Identities=13% Similarity=-0.067 Sum_probs=20.5
Q ss_pred CCcchhhhcccccccccchhhhH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTW 146 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~ 146 (407)
+.+.++|+..-|||++|++++|.
T Consensus 27 ~~s~~~IA~~agvs~~tly~~F~ 49 (180)
T 2fd5_A 27 EPSVGEVMGAAGLTVGGFYAHFQ 49 (180)
T ss_dssp SCCHHHHHHHTTCCGGGGGGTCS
T ss_pred cCCHHHHHHHhCCCccHHHHHCC
Confidence 67889999999999999998763
No 301
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=21.70 E-value=14 Score=28.26 Aligned_cols=28 Identities=4% Similarity=-0.073 Sum_probs=22.2
Q ss_pred CCCcchhhhccc-ccccccchhhhHHHHH
Q 015432 123 SGESLQIIGDLF-GLNQSTVSQVTWRFVE 150 (407)
Q Consensus 123 ~g~s~~~la~~F-gis~sTvsr~i~~~~~ 150 (407)
.+.++.+|+..+ |++++|+++.+.+..+
T Consensus 37 ~~~~~~eL~~~l~gis~~~ls~~L~~Le~ 65 (107)
T 2fsw_A 37 RIIRYGELKRAIPGISEKMLIDELKFLCG 65 (107)
T ss_dssp SCEEHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHcccCCHHHHHHHHHHHHH
Confidence 347889999999 5999999987765433
No 302
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=21.66 E-value=9.3 Score=33.88 Aligned_cols=26 Identities=31% Similarity=0.215 Sum_probs=22.8
Q ss_pred ccCCCcchhhhcccccccccchhhhH
Q 015432 121 LSSGESLQIIGDLFGLNQSTVSQVTW 146 (407)
Q Consensus 121 La~g~s~~~la~~Fgis~sTvsr~i~ 146 (407)
...|.++..||...|||+|+||++.+
T Consensus 41 ~~~gltQ~evA~~tGISqS~ISq~e~ 66 (221)
T 2h8r_A 41 QQHNIPQREVVDVTGLNQSHLSQHLN 66 (221)
T ss_dssp HHHTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHh
Confidence 34589999999999999999999874
No 303
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=21.60 E-value=66 Score=28.75 Aligned_cols=27 Identities=4% Similarity=-0.092 Sum_probs=23.2
Q ss_pred CcchhhhcccccccccchhhhHHHHHH
Q 015432 125 ESLQIIGDLFGLNQSTVSQVTWRFVES 151 (407)
Q Consensus 125 ~s~~~la~~Fgis~sTvsr~i~~~~~a 151 (407)
.+..+||..++++++|+++++.+....
T Consensus 175 ~t~~eLa~~l~i~~~tvt~~v~rLe~~ 201 (250)
T 1p4x_A 175 VLLKDLIETIHHKYPQTVRALNNLKKQ 201 (250)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 678999999999999999988776543
No 304
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=21.37 E-value=84 Score=23.75 Aligned_cols=24 Identities=25% Similarity=0.122 Sum_probs=20.4
Q ss_pred CcchhhhcccccccccchhhhHHH
Q 015432 125 ESLQIIGDLFGLNQSTVSQVTWRF 148 (407)
Q Consensus 125 ~s~~~la~~Fgis~sTvsr~i~~~ 148 (407)
.++..|+...++++||+++.+.+.
T Consensus 37 ~s~~eLa~~l~l~~stLsR~l~rL 60 (96)
T 2obp_A 37 WSLPKIAKRAQLPMSVLRRVLTQL 60 (96)
T ss_dssp CBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCHHHHHHHhCCchhhHHHHHHHH
Confidence 578899999999999999876553
No 305
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=21.29 E-value=31 Score=26.06 Aligned_cols=25 Identities=12% Similarity=0.100 Sum_probs=21.2
Q ss_pred CCcchhhhcccccccccchhhhHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRF 148 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~ 148 (407)
..+..++|..+|+|.+++++.+.+.
T Consensus 20 ~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 20 NFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp SCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3456789999999999999998775
No 306
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=21.19 E-value=24 Score=29.81 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=21.6
Q ss_pred CCCcchhhhcccccccccchhhhHH
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVTWR 147 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i~~ 147 (407)
.+.+...||..++++++||++++.+
T Consensus 56 ~~~t~~eLa~~l~is~~tvs~~l~~ 80 (189)
T 3nqo_A 56 EETTLNNIARKMGTSKQNINRLVAN 80 (189)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 4688999999999999999987644
No 307
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=21.01 E-value=25 Score=29.04 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=22.0
Q ss_pred CcchhhhcccccccccchhhhHHHHH
Q 015432 125 ESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 125 ~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
.++..||..+|+|++||.+.+.+..+
T Consensus 18 ~s~~~la~~lg~s~~tv~~rl~~L~~ 43 (162)
T 3i4p_A 18 LAVADLAKKVGLSTTPCWRRIQKMEE 43 (162)
T ss_dssp SCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 47899999999999999988766544
No 308
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=20.99 E-value=23 Score=31.12 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=24.1
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
+.++..+|..+++|++|||+.+.+..+
T Consensus 27 ~~s~s~aA~~L~isq~avSr~I~~LE~ 53 (230)
T 3cta_A 27 YLTSSKLADMLGISQQSASRIIIDLEK 53 (230)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 466899999999999999999988777
No 309
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=20.74 E-value=9.2 Score=29.29 Aligned_cols=38 Identities=16% Similarity=0.072 Sum_probs=26.3
Q ss_pred hcceeeEEEeccCCCcchhhhcccc----cccccchhhhHHHH
Q 015432 111 NDMVAIALRRLSSGESLQIIGDLFG----LNQSTVSQVTWRFV 149 (407)
Q Consensus 111 ~~ql~i~L~~La~g~s~~~la~~Fg----is~sTvsr~i~~~~ 149 (407)
+..|+.+||. ..+.+..+|++.++ ++.+||++++.+..
T Consensus 37 e~~VL~~L~~-~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe 78 (99)
T 2k4b_A 37 ELIVMRVIWS-LGEARVDEIYAQIPQELEWSLATVKTLLGRLV 78 (99)
T ss_dssp CSHHHHHHHH-HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHH
Confidence 4456666665 44788899999887 46788887765543
No 310
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=20.73 E-value=21 Score=32.62 Aligned_cols=34 Identities=6% Similarity=0.035 Sum_probs=0.0
Q ss_pred ccCCCcchhhhcccccccccchhhhHHHHHHHHH
Q 015432 121 LSSGESLQIIGDLFGLNQSTVSQVTWRFVESMEE 154 (407)
Q Consensus 121 La~g~s~~~la~~Fgis~sTvsr~i~~~~~al~~ 154 (407)
..+|.++...|+..+||+|+||+.+.+.-+.+-.
T Consensus 13 ~~~gls~s~AA~~L~isq~avS~~I~~LE~~lg~ 46 (324)
T 1al3_A 13 VNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGI 46 (324)
T ss_dssp ----------------------------------
T ss_pred HHcccCHHHHHHHhCCCchHHHHHHHHHHHHhCC
Confidence 3334499999999999999999999887776543
No 311
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=20.73 E-value=29 Score=31.55 Aligned_cols=27 Identities=11% Similarity=0.095 Sum_probs=20.9
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
+.+..+|+...|+++||++|++.....
T Consensus 45 ~ltl~eia~~lgl~ksTv~RlL~tL~~ 71 (275)
T 3mq0_A 45 DLTAAELTRFLDLPKSSAHGLLAVMTE 71 (275)
T ss_dssp CEEHHHHHHHHTCC--CHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 467889999999999999998866554
No 312
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=20.58 E-value=15 Score=31.85 Aligned_cols=44 Identities=25% Similarity=0.265 Sum_probs=33.7
Q ss_pred CCChhcceeeEEEeccCCCcchhhhcccccccccchhhhHHHHHHH
Q 015432 107 PLSPNDMVAIALRRLSSGESLQIIGDLFGLNQSTVSQVTWRFVESM 152 (407)
Q Consensus 107 ~l~~~~ql~i~L~~La~g~s~~~la~~Fgis~sTvsr~i~~~~~al 152 (407)
.++..+. -.|.+|+.|.+...||...++|..||..++.+...-|
T Consensus 149 ~LT~rE~--~vL~~l~~g~s~~eIa~~l~is~~TV~~hi~~l~~KL 192 (225)
T 3c3w_A 149 GLTDQER--TLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKL 192 (225)
T ss_dssp TSCHHHH--HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHH--HHHHHHHCCCCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 3555443 2456788999999999999999999998887655444
No 313
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=20.56 E-value=31 Score=25.62 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=20.5
Q ss_pred CCCcchhhhcccccccccchhhhHH
Q 015432 123 SGESLQIIGDLFGLNQSTVSQVTWR 147 (407)
Q Consensus 123 ~g~s~~~la~~Fgis~sTvsr~i~~ 147 (407)
++.+....|..+|||++|+++.+.+
T Consensus 63 ~~gn~~~aA~~LGIsr~tL~rklkk 87 (91)
T 1ntc_A 63 TQGHKQEAARLLGWGAATLTAKLKE 87 (91)
T ss_dssp TTTCTTHHHHHTTCCHHHHHHHHHH
T ss_pred hCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3556678999999999999887765
No 314
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=20.56 E-value=23 Score=29.51 Aligned_cols=24 Identities=8% Similarity=0.028 Sum_probs=21.0
Q ss_pred CCcchhhhcccccccccchhhhHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWR 147 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~ 147 (407)
+.+.++|+...|||++|++++|..
T Consensus 36 ~~t~~~Ia~~agvs~~t~Y~~F~s 59 (211)
T 3him_A 36 ATTTREIAASLDMSPGAVYPHYKT 59 (211)
T ss_dssp TCCHHHHHHHTTCCTTSSTTTCSS
T ss_pred cCCHHHHHHHhCCCcChhhhcCCC
Confidence 678899999999999999997743
No 315
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=20.33 E-value=22 Score=31.68 Aligned_cols=27 Identities=41% Similarity=0.513 Sum_probs=23.2
Q ss_pred CCcchhhhcccccccccchhhhHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVE 150 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~ 150 (407)
+.+..+|+..+|+++||+++++.....
T Consensus 21 ~~s~~ela~~~gl~~stv~r~l~~L~~ 47 (241)
T 2xrn_A 21 GLSLAAIAQLVGLPRSTVQRIINALEE 47 (241)
T ss_dssp CEEHHHHHHHTTSCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 467889999999999999998876654
No 316
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=20.15 E-value=30 Score=26.41 Aligned_cols=25 Identities=12% Similarity=0.165 Sum_probs=21.4
Q ss_pred CCcchhhhcccccccccchhhhHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRF 148 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~ 148 (407)
..+..+||..+|+|.+++++.+.+.
T Consensus 23 ~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 23 PLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4566899999999999999988776
No 317
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=20.03 E-value=28 Score=31.39 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=24.0
Q ss_pred CCcchhhhcccccccccchhhhHHHHHH
Q 015432 124 GESLQIIGDLFGLNQSTVSQVTWRFVES 151 (407)
Q Consensus 124 g~s~~~la~~Fgis~sTvsr~i~~~~~a 151 (407)
+.+..+|+..+|+++||++|++......
T Consensus 36 ~~~~~eia~~~gl~~stv~r~l~tL~~~ 63 (265)
T 2ia2_A 36 RRTLSDVARATDLTRATARRFLLTLVEL 63 (265)
T ss_dssp SEEHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 5678999999999999999998876653
Done!