BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015433
(407 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E6U|A Chain A, Crystal Structure Of Human Lancl1
pdb|3E6U|C Chain C, Crystal Structure Of Human Lancl1
pdb|3E6U|B Chain B, Crystal Structure Of Human Lancl1
pdb|3E6U|D Chain D, Crystal Structure Of Human Lancl1
pdb|3E73|A Chain A, Crystal Structure Of Human Lancl1 Complexed With Gsh
pdb|3E73|B Chain B, Crystal Structure Of Human Lancl1 Complexed With Gsh
Length = 411
Score = 251 bits (642), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 156/419 (37%), Positives = 231/419 (55%), Gaps = 32/419 (7%)
Query: 1 MADRFFPNEMPETSLAVAAHETTTAQDSLTKLLSLPYTAVSDTLKNSALALKQTVVNETW 60
MA R FPN + + ++A A LT S L N L Q +
Sbjct: 13 MAQRAFPNPYADYNKSLA-EGYFDAAGRLT-------PEFSQRLTNKIRELLQQMER--- 61
Query: 61 GVSGKRVQDYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDIV-EACDSASRDSGRVTFI 119
G+ +D T YTG G A L Y V + L+L V ++ + ++ S +TF+
Sbjct: 62 GLKSADPRDGTGYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKRS--ITFL 119
Query: 120 CGRAGVCALGAVLAKHAGDERLLDHYLTKFKEI-KLPSDLPNELLYGRVGFLWACSFLNK 178
CG AG A+ AVL +E+ + +T+ + K+ PNE+LYGR+G+++A F+NK
Sbjct: 120 CGDAGPLAVAAVLYHKMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGRIGYIYALLFVNK 179
Query: 179 HMGKDTISTAQMRAVVDEIIKAGRRLANR----GRCPLMYEWHGKKYWGAAHGLAGIMHV 234
+ G + I + ++ + + I+ +G LA + + PLMYEW+ + Y GAAHGLAGI +
Sbjct: 180 NFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYY 239
Query: 235 LMDMELKPDEVED---VKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLA 291
LM L+ + + VK ++ Y+ + +FPSGNYP G D LVHWCHGAPGV L
Sbjct: 240 LMQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLI 299
Query: 292 KAAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTYVFLSLYRLTGNVEYLYR 350
+A +VF E+++L A +V+W+ GLLK+ G+CHG +GN Y FL+LY LT +++YLYR
Sbjct: 300 QAYKVFREEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNLTQDMKYLYR 359
Query: 351 AKAFA--CFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 407
A FA C Y E D P+SLFEG+ G + D++ P++ARFPA+EL
Sbjct: 360 ACKFAEWCLEY-------GEHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPAFEL 411
>pdb|1Z8P|A Chain A, Ferrous Dioxygen Complex Of The A245s Cytochrome P450eryf
Length = 404
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 277 VHWCHGAPGVTLTLAKAAE-VFGEKEFLQAAVDAGEVVWKRGLLKRVGICH 326
+H+C G P L A +FG L +DA +VVW+R LL R GI H
Sbjct: 348 IHFCMGRPLAKLEGEVALRALFGRFPALSLGIDADDVVWRRSLLLR-GIDH 397
>pdb|1Z8Q|A Chain A, Ferrous Dioxygen Complex Of The A245t Cytochrome P450eryf
Length = 404
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 277 VHWCHGAPGVTLTLAKAAE-VFGEKEFLQAAVDAGEVVWKRGLLKRVGICH 326
+H+C G P L A +FG L +DA +VVW+R LL R GI H
Sbjct: 348 IHFCMGRPLAKLEGEVALRALFGRFPALSLGIDADDVVWRRSLLLR-GIDH 397
>pdb|1Z8O|A Chain A, Ferrous Dioxygen Complex Of The Wild-Type Cytochrome
P450eryf
Length = 404
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 277 VHWCHGAPGVTLTLAKAAE-VFGEKEFLQAAVDAGEVVWKRGLLKRVGICH 326
+H+C G P L A +FG L +DA +VVW+R LL R GI H
Sbjct: 348 IHFCMGRPLAKLEGEVALRALFGRFPALSLGIDADDVVWRRSLLLR-GIDH 397
>pdb|1JIP|A Chain A, P450eryf(A245s)KETOCONAZOLE
Length = 403
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 277 VHWCHGAPGVTLTLAKAAE-VFGEKEFLQAAVDAGEVVWKRGLLKRVGICH 326
+H+C G P L A +FG L +DA +VVW+R LL R GI H
Sbjct: 347 IHFCMGRPLAKLEGEVALRALFGRFPALSLGIDADDVVWRRSLLLR-GIDH 396
>pdb|1JIO|A Chain A, P450eryf/6deb
Length = 403
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 277 VHWCHGAPGVTLTLAKAAE-VFGEKEFLQAAVDAGEVVWKRGLLKRVGICH 326
+H+C G P L A +FG L +DA +VVW+R LL R GI H
Sbjct: 347 IHFCMGRPLAKLEGEVALRALFGRFPALSLGIDADDVVWRRSLLLR-GIDH 396
>pdb|1EGY|A Chain A, Cytochrome P450eryf With 9-Aminophenanthrene Bound
pdb|1EUP|A Chain A, X-Ray Crystal Structure Of Cytochrome P450eryf With
Androstendione Bound
pdb|1JIN|A Chain A, P450eryfKETOCONAZOLE
pdb|1OXA|A Chain A, Cytochrome P450 (Donor:o2 Oxidoreductase)
Length = 403
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 277 VHWCHGAPGVTLTLAKAAE-VFGEKEFLQAAVDAGEVVWKRGLLKRVGICH 326
+H+C G P L A +FG L +DA +VVW+R LL R GI H
Sbjct: 347 IHFCMGRPLAKLEGEVALRALFGRFPALSLGIDADDVVWRRSLLLR-GIDH 396
>pdb|2G02|A Chain A, Nisin Cyclase
pdb|2G0D|A Chain A, Nisin Cyclase
Length = 409
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 76/190 (40%), Gaps = 40/190 (21%)
Query: 223 GAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMI----------KNRFPSGNYPSSEGSE 272
G AHGLAG+ +L +K E L+ +I K +F + ++ +
Sbjct: 203 GLAHGLAGVGCILAYAHIKGYSNEASLSALQKIIFIYEKFELERKKQFLWKDGLVADELK 262
Query: 273 SDRLVH--------WCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKRVG- 323
++++ WC+G PG++L F VD E + + + +++G
Sbjct: 263 KEKVIREASFIRDAWCYGGPGISLLYLYGGLALDNDYF----VDKAEKILESAMQRKLGI 318
Query: 324 ----ICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYD---RAQKLIAEGKMHGGDR 376
ICHG SG L + + L K F ++ + +++++ E +G +
Sbjct: 319 DSYMICHGYSG-------LIEICSLFKRLLNTKKFDSYMEEFNVNSEQILEE---YGDES 368
Query: 377 PYSLFEGIGG 386
EGI G
Sbjct: 369 GTGFLEGISG 378
>pdb|1VJT|A Chain A, Crystal Structure Of Alpha-Glucosidase (Tm0752) From
Thermotoga Maritima At 2.50 A Resolution
Length = 483
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 216 WHGKKYWGAAHGLAGIMHVLMDMELKPDEVE-DVKGTLRYMIKNRFP---SGNYPSSEGS 271
W G G HG+AG+ V ++L P+EV+ V G + NRF YP +
Sbjct: 184 WTGANIVGFCHGVAGVYEVFEKLDLDPEEVDWQVAGVNHGIWLNRFRYRGEDAYPLLDEW 243
Query: 272 ESDRLVHWCHGAPGVTLTLAKAAEVF 297
+L W P T A + +
Sbjct: 244 IEKKLPEWEPKNPWDTQXSPAAXDXY 269
>pdb|4B6J|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|C Chain C, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|D Chain D, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
Length = 201
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 309 AGEVVWKRGLLKRVGICHGISGNTYV 334
+GEV W LLKRVG+ GI T++
Sbjct: 47 SGEVEWLDSLLKRVGLIRGIDEGTFL 72
>pdb|4AP9|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From
T.Onnurineus In Complex With Ndsb-201
pdb|4AP9|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From
T.Onnurineus In Complex With Ndsb-201
pdb|4AP9|C Chain C, Crystal Structure Of Phosphoserine Phosphatase From
T.Onnurineus In Complex With Ndsb-201
pdb|4AP9|D Chain D, Crystal Structure Of Phosphoserine Phosphatase From
T.Onnurineus In Complex With Ndsb-201
Length = 201
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 309 AGEVVWKRGLLKRVGICHGISGNTYV 334
+GEV W LLKRVG+ GI T++
Sbjct: 47 SGEVEWLDSLLKRVGLIRGIDEGTFL 72
>pdb|1R9J|A Chain A, Transketolase From Leishmania Mexicana
pdb|1R9J|B Chain B, Transketolase From Leishmania Mexicana
Length = 673
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 12/85 (14%)
Query: 139 ERLLDHYLTKFKEIKLPSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAV----- 193
+ L D +++ LP+ +P + V F W + + H+G + V
Sbjct: 582 QELFDAQPDTYRQAVLPAGVPVVSVEAYVSFGWE-KYSHAHVGMSGFGASAPAGVLYKKF 640
Query: 194 ---VDEIIKAGRRLANR---GRCPL 212
V+E+++ GR LA R G PL
Sbjct: 641 GITVEEVVRTGRELAKRFPDGTAPL 665
>pdb|3U95|A Chain A, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
pdb|3U95|B Chain B, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
pdb|3U95|C Chain C, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
pdb|3U95|D Chain D, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
pdb|3U95|E Chain E, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
pdb|3U95|F Chain F, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
Length = 477
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 216 WHGKKYWGAAHGLAGIMHVLMDMELKPDEVE-DVKGTLRYMIKNRF 260
W G G HG+AG+ V + L P+EV+ V G + NRF
Sbjct: 172 WTGANIIGFCHGVAGVYEVFERLGLDPEEVDWQVAGVNHGIWLNRF 217
>pdb|1FL9|A Chain A, The Yjee Protein
pdb|1FL9|B Chain B, The Yjee Protein
pdb|1FL9|C Chain C, The Yjee Protein
Length = 161
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 302 FLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEY---LYR 350
+L + AG+ RG+L+ +G + TY + Y + G + Y LYR
Sbjct: 40 YLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAGKMIYHFDLYR 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,218,706
Number of Sequences: 62578
Number of extensions: 515404
Number of successful extensions: 1002
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 974
Number of HSP's gapped (non-prelim): 27
length of query: 407
length of database: 14,973,337
effective HSP length: 101
effective length of query: 306
effective length of database: 8,652,959
effective search space: 2647805454
effective search space used: 2647805454
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)