Query 015433
Match_columns 407
No_of_seqs 286 out of 1019
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 06:16:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015433.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015433hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2787 Lanthionine synthetase 100.0 1.1E-93 2.5E-98 644.0 35.4 396 1-407 1-403 (403)
2 cd04794 euk_LANCL eukaryotic L 100.0 2.3E-55 4.9E-60 427.9 33.4 327 73-403 1-343 (343)
3 PF05147 LANC_like: Lanthionin 100.0 8.1E-48 1.8E-52 376.7 11.3 338 67-406 2-354 (355)
4 cd04434 LanC_like LanC-like pr 100.0 2E-43 4.4E-48 343.5 32.1 322 73-397 1-336 (343)
5 cd04792 LanM-like LanM-like pr 100.0 4.4E-42 9.6E-47 370.4 33.2 333 58-398 467-819 (825)
6 cd04793 LanC LanC is the cycla 100.0 6.9E-42 1.5E-46 338.1 28.1 322 73-398 1-373 (382)
7 cd04791 LanC_SerThrkinase Lant 100.0 3.8E-40 8.2E-45 318.4 25.7 314 73-404 1-321 (321)
8 COG4403 LcnDR2 Lantibiotic mod 100.0 1.4E-39 3E-44 328.2 25.3 309 65-398 638-954 (963)
9 cd04794 euk_LANCL eukaryotic L 99.9 1.3E-25 2.8E-30 218.8 21.1 257 119-398 1-286 (343)
10 cd04434 LanC_like LanC-like pr 99.9 9.4E-25 2E-29 212.3 24.3 260 68-341 44-336 (343)
11 cd04792 LanM-like LanM-like pr 99.9 1.4E-23 3E-28 226.8 26.2 255 68-340 535-817 (825)
12 cd04791 LanC_SerThrkinase Lant 99.9 4.8E-23 1E-27 199.0 20.3 247 68-340 38-313 (321)
13 cd04793 LanC LanC is the cycla 99.9 1.8E-22 3.9E-27 199.6 22.0 266 119-398 1-309 (382)
14 PF05147 LANC_like: Lanthionin 99.8 1.2E-20 2.6E-25 184.7 10.4 280 43-340 29-344 (355)
15 COG4403 LcnDR2 Lantibiotic mod 99.8 1.7E-17 3.8E-22 169.0 20.3 245 66-341 688-953 (963)
16 KOG2787 Lanthionine synthetase 99.7 7E-17 1.5E-21 147.1 17.8 257 113-396 60-340 (403)
17 COG4225 Predicted unsaturated 97.7 0.0043 9.3E-08 58.6 17.2 237 83-329 45-323 (357)
18 cd00249 AGE AGE domain; N-acyl 96.9 0.21 4.6E-06 49.2 20.9 230 125-362 58-338 (384)
19 PF07470 Glyco_hydro_88: Glyco 96.9 0.086 1.9E-06 51.2 17.7 229 79-316 30-287 (336)
20 COG1331 Highly conserved prote 96.6 0.53 1.2E-05 49.0 21.5 254 72-361 272-570 (667)
21 PF07944 DUF1680: Putative gly 96.5 0.047 1E-06 56.4 13.3 131 224-357 62-206 (520)
22 cd00249 AGE AGE domain; N-acyl 96.0 1.7 3.7E-05 42.8 23.0 238 76-318 55-339 (384)
23 PF07944 DUF1680: Putative gly 95.1 1.5 3.1E-05 45.5 17.5 217 122-354 61-330 (520)
24 COG1331 Highly conserved prote 94.9 0.23 4.9E-06 51.7 10.6 257 125-395 214-548 (667)
25 COG4225 Predicted unsaturated 94.8 1.9 4.1E-05 41.3 15.5 181 76-261 83-306 (357)
26 COG3533 Uncharacterized protei 94.7 0.4 8.7E-06 47.9 11.4 134 222-357 66-209 (589)
27 TIGR02474 pec_lyase pectate ly 94.7 0.53 1.1E-05 44.3 11.7 132 228-361 46-218 (290)
28 PF07470 Glyco_hydro_88: Glyco 94.0 2.7 5.9E-05 40.7 15.7 201 169-393 30-261 (336)
29 PF09492 Pec_lyase: Pectic aci 92.5 0.31 6.7E-06 45.9 6.2 131 228-360 41-212 (289)
30 PF03663 Glyco_hydro_76: Glyco 90.1 2.2 4.7E-05 42.1 9.8 72 286-360 93-189 (370)
31 PF03663 Glyco_hydro_76: Glyco 88.5 1.7 3.7E-05 42.8 7.8 74 287-362 161-257 (370)
32 PLN02993 lupeol synthase 88.0 41 0.00088 36.5 17.9 147 160-316 560-713 (763)
33 PF13243 Prenyltrans_1: Prenyl 87.4 0.5 1.1E-05 37.4 2.7 58 248-316 1-58 (109)
34 TIGR02474 pec_lyase pectate ly 86.7 13 0.00029 35.1 12.0 145 165-316 45-218 (290)
35 PF09492 Pec_lyase: Pectic aci 85.6 7.6 0.00016 36.7 9.8 115 284-398 42-196 (289)
36 PF07221 GlcNAc_2-epim: N-acyl 85.6 2.1 4.5E-05 41.7 6.5 130 231-361 26-174 (346)
37 KOG2430 Glycosyl hydrolase, fa 82.5 6.7 0.00015 37.4 8.0 84 279-362 182-284 (587)
38 PTZ00470 glycoside hydrolase f 78.7 86 0.0019 32.5 21.8 33 331-363 426-458 (522)
39 PTZ00470 glycoside hydrolase f 78.3 11 0.00024 38.8 8.8 75 287-361 161-257 (522)
40 cd02889 SQCY Squalene cyclase 78.1 14 0.00031 35.6 9.3 58 248-317 1-59 (348)
41 PLN02993 lupeol synthase 76.8 59 0.0013 35.2 13.9 142 163-316 485-651 (763)
42 PLN03012 Camelliol C synthase 76.1 34 0.00073 37.0 11.8 94 166-269 566-662 (759)
43 COG3533 Uncharacterized protei 71.8 26 0.00057 35.5 9.0 75 69-145 173-253 (589)
44 PLN03012 Camelliol C synthase 67.8 1.9E+02 0.0041 31.5 18.2 102 160-268 615-723 (759)
45 PF00432 Prenyltrans: Prenyltr 63.3 3.4 7.3E-05 26.9 0.7 34 247-280 2-35 (44)
46 TIGR01787 squalene_cyclas squa 59.1 1.7E+02 0.0038 31.0 13.0 41 226-266 489-529 (621)
47 TIGR01507 hopene_cyclase squal 58.3 2.6E+02 0.0056 29.8 21.3 41 228-268 383-425 (635)
48 PF06662 C5-epim_C: D-glucuron 56.8 19 0.00042 31.8 4.6 53 261-313 3-62 (189)
49 TIGR01507 hopene_cyclase squal 56.7 2E+02 0.0043 30.7 12.9 71 187-267 470-540 (635)
50 TIGR03463 osq_cycl 2,3-oxidosq 55.6 1.8E+02 0.004 31.0 12.4 44 224-268 504-547 (634)
51 PF06917 Pectate_lyase_2: Peri 55.1 83 0.0018 32.0 9.0 75 286-363 389-474 (557)
52 PRK11097 endo-1,4-D-glucanase; 52.5 97 0.0021 30.6 9.1 81 281-361 116-214 (376)
53 PF06662 C5-epim_C: D-glucuron 50.6 23 0.0005 31.3 4.0 35 323-359 29-63 (189)
54 KOG3760 Heparan sulfate-glucur 49.3 23 0.00051 34.6 4.1 109 245-355 379-515 (594)
55 TIGR01787 squalene_cyclas squa 47.2 3.8E+02 0.0082 28.5 13.5 39 229-267 369-409 (621)
56 TIGR03463 osq_cycl 2,3-oxidosq 46.1 1.7E+02 0.0038 31.1 10.5 78 188-268 525-605 (634)
57 COG5029 CAL1 Prenyltransferase 42.6 2E+02 0.0043 27.6 9.0 135 250-397 130-273 (342)
58 PLN02613 endoglucanase 42.6 3.3E+02 0.0071 28.1 11.4 68 286-353 177-256 (498)
59 PF07221 GlcNAc_2-epim: N-acyl 42.4 1.8E+02 0.0038 28.1 9.4 76 286-362 26-116 (346)
60 PF01532 Glyco_hydro_47: Glyco 41.3 61 0.0013 32.9 6.1 75 286-360 82-178 (452)
61 PLN02266 endoglucanase 40.9 3.2E+02 0.007 28.3 11.1 67 286-353 195-279 (510)
62 cd02889 SQCY Squalene cyclase 40.8 3.3E+02 0.0072 26.0 16.7 39 228-268 281-319 (348)
63 KOG2429 Glycosyl hydrolase, fa 40.1 4.5E+02 0.0098 27.3 13.9 130 228-360 195-405 (622)
64 PLN02420 endoglucanase 39.1 3.8E+02 0.0083 27.8 11.3 67 286-353 192-275 (525)
65 KOG2429 Glycosyl hydrolase, fa 38.7 1E+02 0.0022 31.8 6.9 85 279-363 193-295 (622)
66 cd02892 SQCY_1 Squalene cyclas 38.3 5.2E+02 0.011 27.5 22.7 39 229-267 378-421 (634)
67 KOG2430 Glycosyl hydrolase, fa 31.5 4.8E+02 0.01 25.3 9.7 76 77-152 187-280 (587)
68 PF00759 Glyco_hydro_9: Glycos 29.8 2.3E+02 0.0049 28.5 8.1 111 244-354 96-243 (444)
69 cd02892 SQCY_1 Squalene cyclas 29.6 7.1E+02 0.015 26.5 16.5 24 245-268 582-605 (634)
70 PLN02909 Endoglucanase 27.7 6.8E+02 0.015 25.7 10.9 66 287-353 186-264 (486)
71 PLN02308 endoglucanase 26.5 6.9E+02 0.015 25.7 10.7 67 286-353 177-261 (492)
72 COG2942 N-acyl-D-glucosamine 2 26.2 6.5E+02 0.014 25.0 12.0 122 241-362 73-210 (388)
73 PF01532 Glyco_hydro_47: Glyco 25.6 1E+02 0.0022 31.2 4.7 33 331-363 360-392 (452)
74 PRK11097 endo-1,4-D-glucanase; 22.5 5.9E+02 0.013 25.2 9.0 37 326-362 116-152 (376)
75 KOG2204 Mannosyl-oligosacchari 21.6 3.4E+02 0.0073 28.2 7.1 73 289-361 270-365 (625)
76 PLN02345 endoglucanase 20.2 3.5E+02 0.0075 27.7 7.1 67 285-352 146-228 (469)
No 1
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=100.00 E-value=1.1e-93 Score=644.00 Aligned_cols=396 Identities=57% Similarity=1.036 Sum_probs=357.2
Q ss_pred CCCCCCCCCCCCCchhhhcccccchhhhhhhhccCCchhhHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCcHHHH
Q 015433 1 MADRFFPNEMPETSLAVAAHETTTAQDSLTKLLSLPYTAVSDTLKNSALALKQTVVNETWGVSGKRVQDYTLYTGALGTA 80 (407)
Q Consensus 1 ~~~r~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ly~G~~Gia 80 (407)
|+.|+|+|||||...+...+. ..++ .+ .+..-+.+.+++.+..++|.+++.+|+..+..+.|.++|+|.+|||
T Consensus 1 me~r~~~np~pd~a~G~~e~~---~~~~-~e---~~~~~~~e~~~r~~~~ikd~~~~~~~~~S~d~~~d~tlYtG~~GiA 73 (403)
T KOG2787|consen 1 MERRAFVNPFPDDASGENETV---GSEP-DE---PTGKLFTEFIKRLATKIKDLVVEMTWGKSGDEVRDGTLYTGWLGIA 73 (403)
T ss_pred CcccccCCCCcccccCCCccc---cCCC-cc---cccccHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCceeechHHHH
Confidence 899999999999765422110 1011 00 1122256778888889999999999997666699999999999999
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHHhcCCCCCCceeeCCchHHHHHHHHHHHHcCChhHHHHHHHHhhhccC-CCCCC
Q 015433 81 YLLFKAYQVTKNDNELKLCCDIVEACDSASRDSGRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIKL-PSDLP 159 (407)
Q Consensus 81 l~l~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~G~~Gi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 159 (407)
++++++|++|.|..++..|.++++.+.....+..+++|+||.+|++++.+++++.+++++..+.++.++..+.. +++.+
T Consensus 74 fl~~kly~vTrd~~~L~~~~e~Vk~~~~~~~s~~~vTFLCG~aGv~avgAvia~~l~~~~~~~~~l~~f~~l~~~~~dlp 153 (403)
T KOG2787|consen 74 FLYLKLYEVTRDLYDLLLCLEIVKACLVASRSSRRVTFLCGRAGVCAVGAVIAHKLGEEEELDDCLARFLSLRLCSSDLP 153 (403)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccCceEEECCCcchhHHHHHHHHHhccHHHHHHHHHHHHhcccCCcccc
Confidence 99999999999999999999999999865566778999999999999999999999999999999999888755 77889
Q ss_pred cccccchhhHHHHHHHHhhHhCCCCCcHHHHHHHHHHHHHHhHHhhhcCC--CCCcccccCCccCCcccchHHHHHHHHc
Q 015433 160 NELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGR--CPLMYEWHGKKYWGAAHGLAGIMHVLMD 237 (407)
Q Consensus 160 ~d~~~G~AG~l~~ll~l~~~~~~~~~~~~~i~~i~~~ii~~~~~~~~~~~--~pl~~~~~~~~~~G~aHG~aGI~~~L~~ 237 (407)
+|+++|+||++|+++++|++++.++++++.|++|++.|+.+++.++++.. +||||+||+++|+|+|||++||+++|++
T Consensus 154 ~ElLyGRaGYL~a~lflNk~ig~~ti~~~~i~~i~~~I~~sGr~~a~k~~~~cPLmYewhg~~Y~GAAhGLagI~~vLm~ 233 (403)
T KOG2787|consen 154 DELLYGRAGYLWACLFLNKYIGQETIPDDDIRSIVQAILTSGRELAKKENSPCPLMYEWHGKRYWGAAHGLAGILYVLMD 233 (403)
T ss_pred HHHHhhHHHHHHHHHHHHhhcCCCcCCHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccceehhhhhhHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999987754 9999999999999999999999999999
Q ss_pred ccCCCch---HHHHHHHHHHHHHcccCCCCCCCCCCCCCCcccccccCchhHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Q 015433 238 MELKPDE---VEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVW 314 (407)
Q Consensus 238 ~~~~~~~---~~~i~~~l~~~~~~~~~~gnwp~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 314 (407)
....+++ .++++.+++|+++++|++||+|++.+++.|++|+||||+||+++++.+++++|++++|++++.+|.+.||
T Consensus 234 ~~L~~d~~~~~~dVK~sldym~~~rfpsGNyP~s~~~~~drLVhWcHGApGv~~~L~kAy~VF~Eekyl~aa~ecadvVW 313 (403)
T KOG2787|consen 234 PTLKVDQPALLKDVKGSLDYMIQNRFPSGNYPSSEGNKRDRLVHWCHGAPGVAYTLAKAYQVFKEEKYLEAAMECADVVW 313 (403)
T ss_pred CCCCCcchhHHHhhhhHHHHHHHccCCCCCCCcccCCCcceeeeeccCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 8766554 7899999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred HhCCCCC-CcccccchhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcCccccchHHHHHHHHH
Q 015433 315 KRGLLKR-VGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLD 393 (407)
Q Consensus 315 ~~g~~~~-~~lCHG~aG~~~~ll~l~~~t~~~~~~~~a~~~~~~~~~~~~~~~~~g~~~~~~~~~sL~~G~aGi~~~Ll~ 393 (407)
++|++++ +|+|||+|||+|+||.+||+|+|.+|++||++|++|++++..+ .| .+.+|+|+|||+|+||.+|+|++
T Consensus 314 ~rGlLkkg~GichGvaGNaYvFLsLyRLT~d~kYlyRA~kFae~lld~~~~---~g-~r~pDrpySLfeG~AG~v~~l~D 389 (403)
T KOG2787|consen 314 KRGLLKKGVGICHGVAGNAYVFLSLYRLTGDMKYLYRAKKFAEWLLDYGFS---HG-CRTPDRPYSLFEGVAGTVYLLLD 389 (403)
T ss_pred HhhhhhcCCcccccccCchhhhHhHHHHcCcHHHHHHHHHHHHHHHhhhhh---cc-CCCCCCChhHHhcccchhhHhhh
Confidence 9999988 9999999999999999999999999999999999999998753 22 35579999999999999999999
Q ss_pred ccCCCCCCCCCCCC
Q 015433 394 MIEPSEARFPAYEL 407 (407)
Q Consensus 394 l~~p~~~~fp~~~~ 407 (407)
+++|++++||+|||
T Consensus 390 ll~P~~arFP~~El 403 (403)
T KOG2787|consen 390 LLDPEQARFPGYEL 403 (403)
T ss_pred hcChhhccCCcCcC
Confidence 99999999999997
No 2
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=100.00 E-value=2.3e-55 Score=427.88 Aligned_cols=327 Identities=49% Similarity=0.922 Sum_probs=278.3
Q ss_pred ccCcHHHHHHHHHHhhh----cCChHHHHHHHHHHHHHHhcCCCCCCceeeCCchHHHHHHHHHHHHcCChhHHHHHHHH
Q 015433 73 YTGALGTAYLLFKAYQV----TKNDNELKLCCDIVEACDSASRDSGRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTK 148 (407)
Q Consensus 73 y~G~~Gial~l~~l~~~----~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~G~~Gi~~~~~~l~~~~~~~~~~~~~~~~ 148 (407)
|+|.+||+|+|+++++. +++++|++.+.+.++.+........++++++|.+|+++++..+++.+++++..+.+.+.
T Consensus 1 Y~G~~Gi~~~l~~l~~~~~~~~~~~~y~~~a~~~i~~~~~~~~~~~~~~~~~G~aGi~~~l~~l~~~~~d~~~~~~~~~~ 80 (343)
T cd04794 1 YTGAAGIAYLFLQLYEVPPLLTNDQTYLSWALEYIKASLRAIPDDRRISFLCGNAGVYAVGAAVYHYLKDEDEVDEFLSK 80 (343)
T ss_pred CcChHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHHhhcccccCCCccCCcHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 78999999999999999 99999999999888877654433567899999999999999999999998888777666
Q ss_pred hhhcc---C--CCCCCcccccchhhHHHHHHHHhhHhCCCCCcHHHHHHHHHHHHHHhHHhhhc--CCCCCcccccCCcc
Q 015433 149 FKEIK---L--PSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANR--GRCPLMYEWHGKKY 221 (407)
Q Consensus 149 ~~~~~---~--~~~~~~d~~~G~AG~l~~ll~l~~~~~~~~~~~~~i~~i~~~ii~~~~~~~~~--~~~pl~~~~~~~~~ 221 (407)
++.+. . .++..+|+++|+||++++|+.+++.+++++...+.+.++++.+++..+..... ..+|.+|+|++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~d~l~G~aG~l~~Ll~l~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (343)
T cd04794 81 FLQLLESVVSPDSGLPDELLYGRAGYLYALLFLNKKFGFKKIPSSLIKSICDAILESGRTGAAKYRAPCPLMYEWHGKEY 160 (343)
T ss_pred HHHHHHHHhhcccCCchhhhccHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHhhhccCCCCCccccccCcee
Confidence 55431 1 13345799999999999999999998865555678889999988876543322 24677888988889
Q ss_pred CCcccchHHHHHHHHcccCC---CchHHHHHHHHHHHHHcccCCCCCCCCCCCC-CCcccccccCchhHHHHHHHHHHHh
Q 015433 222 WGAAHGLAGIMHVLMDMELK---PDEVEDVKGTLRYMIKNRFPSGNYPSSEGSE-SDRLVHWCHGAPGVTLTLAKAAEVF 297 (407)
Q Consensus 222 ~G~aHG~aGI~~~L~~~~~~---~~~~~~i~~~l~~~~~~~~~~gnwp~~~~~~-~~~~~~WChG~~Gi~~~l~~~~~~~ 297 (407)
+|||||.+||+++|+.+... .+..+.++++++++.+.+.++||||+..... .+..++||||+|||+.+++.+++++
T Consensus 161 ~G~aHG~aGI~~~L~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~g~w~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~ 240 (343)
T cd04794 161 LGAAHGLAGILYILLQTPLFLLKPSLAPLIKRSLDYLLSLQFPSGNFPSSLGNRKRDRLVQWCHGAPGIVYLLAKAYLVF 240 (343)
T ss_pred cchhhhHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHHHhhccCCCCCCccCCCCCCccccccCCCchHHHHHHHHHHHh
Confidence 99999999999999988653 3457889999999987766789999876432 3457899999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCCC-CcccccchhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCC
Q 015433 298 GEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDR 376 (407)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~g~~~~-~~lCHG~aG~~~~ll~l~~~t~~~~~~~~a~~~~~~~~~~~~~~~~~g~~~~~~~ 376 (407)
+++++.+.++++.+.+|++|+..+ +|||||++||+++|+++++.|++++|+++|..+++.+.+...+ .+ ...++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~g~~~~~~~lCHG~~G~~~~lL~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~-~~~~~~ 316 (343)
T cd04794 241 KEEQYLEAAIKCGELIWKRGLLKKGPGLCHGIAGNAYAFLLLYRLTGDLKYLYRACKFAEFLINYGFK---NG-ARIPDR 316 (343)
T ss_pred CCHHHHHHHHHHHHHHHHhCCccCCCccccCccchHHHHHHHHHHhCcHHHHHHHHHHHHHHhcchhh---hc-cCCCCC
Confidence 999999999999999999999864 8999999999999999999999999999999999999887543 11 345789
Q ss_pred cCccccchHHHHHHHHHccCCCCCCCC
Q 015433 377 PYSLFEGIGGMTHLFLDMIEPSEARFP 403 (407)
Q Consensus 377 ~~sL~~G~aGi~~~Ll~l~~p~~~~fp 403 (407)
++|||+|+||++|+|+|+.+|+++.||
T Consensus 317 ~~~l~~G~aG~~~~ll~~~~p~~~~f~ 343 (343)
T cd04794 317 PFSLFEGLAGTACFLADLLQPRQAGFP 343 (343)
T ss_pred CchhhccHHhHHHHHHHHcCcccccCC
Confidence 999999999999999999999999999
No 3
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=100.00 E-value=8.1e-48 Score=376.72 Aligned_cols=338 Identities=23% Similarity=0.403 Sum_probs=252.1
Q ss_pred CCCCCcccCcHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhcCCCCC--CceeeCCchHHHHHHHHHHHHcCChhHHHH
Q 015433 67 VQDYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRDSG--RVTFICGRAGVCALGAVLAKHAGDERLLDH 144 (407)
Q Consensus 67 ~~~~~ly~G~~Gial~l~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~--~~~~~~G~~Gi~~~~~~l~~~~~~~~~~~~ 144 (407)
|.+.+||+|.+||+++|.++++.+++++|.+.+.++++.+........ ++|+++|.+|+++++..+++..++....+.
T Consensus 2 ~~~~sly~G~~Gi~l~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~gl~~G~~Gi~~~l~~~~~~~~~~~~~~~ 81 (355)
T PF05147_consen 2 PLDYSLYDGSAGIALFLSELYRITGDPKYLDLAEKLLEKLINYIENNPYDSIGLFSGLAGIAYALSYLSKRLGDEKYIEE 81 (355)
T ss_dssp CCGGSTTTSHHHHHHHHHCCCCCCTHHHHHHHHHHHHHHHCCCHHCC--S--STTTSCHHHHHHHHHHCCCTCHHHHHHH
T ss_pred CCCCcCCCchHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhccCcCCcccCChHHHHHHHHHHHHhccchHHHHH
Confidence 678899999999999999999999999999999999998775432222 899999999999999888877776655555
Q ss_pred HHHHhhhcc---CCCCCC--cccccchhhHHHHHHHHhhHhCCCCCcHHHHHHHHHHHHHHhHHhhhcCCCCCcccc-cC
Q 015433 145 YLTKFKEIK---LPSDLP--NELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEW-HG 218 (407)
Q Consensus 145 ~~~~~~~~~---~~~~~~--~d~~~G~AG~l~~ll~l~~~~~~~~~~~~~i~~i~~~ii~~~~~~~~~~~~pl~~~~-~~ 218 (407)
.++.+.... ...+.. .|+++|.||++++++.+++.++++.+. +.+.+++++|++...... ....+.++.| .+
T Consensus 82 ~l~~~~~~i~~~~~~~~~~~~D~l~G~aGi~~~ll~~~~~~~~~~~l-~~i~~~~~~l~~~~~~~~-~~~~~~~~~~~~~ 159 (355)
T PF05147_consen 82 LLKRILNIIENSISNDSNNDYDLLSGLAGIGLYLLSLYEKTKDPKYL-DIIEKILEKLLESIINDD-PSENQIGSEWKEG 159 (355)
T ss_dssp HHHHHHHCHHHHHHCT--GGCSTTTSHHHHHHHHCCHHHHHCCHHS--HHHHHHHHHCCCHHCCCH-TCCGSSSHHCHTT
T ss_pred HHHHHHHHHHHhhhhcccccchhhcccHHHHHHHHHHHhhccchHHH-HHHHHHHHHHHHHHhhcc-cccCCCccccCCC
Confidence 555443321 112223 899999999999999999988776665 577778887777654322 1234566677 67
Q ss_pred CccCCcccchHHHHHHHHccc-CCC---chHHHHHHHHHHHHHccc-CCCCCCCCCCCCCC-cccccccCchhHHHHHHH
Q 015433 219 KKYWGAAHGLAGIMHVLMDME-LKP---DEVEDVKGTLRYMIKNRF-PSGNYPSSEGSESD-RLVHWCHGAPGVTLTLAK 292 (407)
Q Consensus 219 ~~~~G~aHG~aGI~~~L~~~~-~~~---~~~~~i~~~l~~~~~~~~-~~gnwp~~~~~~~~-~~~~WChG~~Gi~~~l~~ 292 (407)
..+.|+|||.+||+++|++++ ... +..+.+++.++++.+... .+++||+....... ...+||||++||++++..
T Consensus 160 ~~~~G~aHG~~Gi~~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WC~G~~Gi~~~~~~ 239 (355)
T PF05147_consen 160 FINLGFAHGIAGILYALLRLYKKGTKDPEYLKLIEQILNFLLKHFNTDDGGWPDNRNNSNYKSRPSWCYGSPGILLALLK 239 (355)
T ss_dssp BEE-STTTSHHHHHHHHCHCCHHT--HHHHHHCHHHHHHHHHHC--TGCCT--SECTHHHHHC--SSSSSHHHHHHHHHH
T ss_pred CccCCccccHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHHhcCcccCCCCCCCCccccccccccccCcHHHHHHHHH
Confidence 789999999999999999987 343 236678999999987654 46779987643211 168999999999999999
Q ss_pred HHHHhCcHHHHHHHHHHHHHHHHhC-CCCCCcccccchhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 015433 293 AAEVFGEKEFLQAAVDAGEVVWKRG-LLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKM 371 (407)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~lCHG~aG~~~~ll~l~~~t~~~~~~~~a~~~~~~~~~~~~~~~~~g~~ 371 (407)
+++.++++.+.+.++++.+.+++++ ...++++|||.+|++++|+.+++.++++++.+++.++++.+++...+.......
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lCHG~aG~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (355)
T PF05147_consen 240 AYKILDDEEYDEEAEQALESILQKGLFLNNPSLCHGTAGILEILLDLYKYTGDEEYKELANKLIQKLLSYYDENGYFPGE 319 (355)
T ss_dssp HHHHCT-HHHHHHHHHHHHHHHHH-TCTTSS-STTSHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHCTTCCC---HHHT
T ss_pred HHHhhchHHHHHHHHHHHHHHHHccccCCCCceeCchHHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccccccCC
Confidence 9999999999999999999999987 567799999999999999999999999999999999887777654331100011
Q ss_pred CCCCCcCccccchHHHHHHHHHccCCCCCCCCCCC
Q 015433 372 HGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYE 406 (407)
Q Consensus 372 ~~~~~~~sL~~G~aGi~~~Ll~l~~p~~~~fp~~~ 406 (407)
.....++|||+|.|||+++|+++.+|+++.||-+-
T Consensus 320 ~~~~~~~~l~~G~~Gi~~~ll~~~~~~~~~~~~~l 354 (355)
T PF05147_consen 320 PRYRISFGLMTGIAGILYALLRLLNPDKPNWPSIL 354 (355)
T ss_dssp S-STTTTSTTTSHHHHHHHHHHHCSGGGS--TTT-
T ss_pred CCCCCCCCccccHHHHHHHHHHhcCCCCCCCCccc
Confidence 23467899999999999999999999999998653
No 4
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=100.00 E-value=2e-43 Score=343.52 Aligned_cols=322 Identities=34% Similarity=0.546 Sum_probs=249.5
Q ss_pred ccCcHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhcCCCC--CCceeeCCchHHHHHHHHHHHHcCChhHHHHHHHHhh
Q 015433 73 YTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRDS--GRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFK 150 (407)
Q Consensus 73 y~G~~Gial~l~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~--~~~~~~~G~~Gi~~~~~~l~~~~~~~~~~~~~~~~~~ 150 (407)
|+|.+||+++|.++++.++++++.+.+...++.+....... .+.|+|+|.+|+++++..+++.+++++..+.+.+.+.
T Consensus 1 y~G~~Gi~l~l~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~G~~Gi~~~l~~l~~~~~~~~~~~~~~~~~~ 80 (343)
T cd04434 1 YHGAAGIALLLLELYRVTPDEKYQDLAHKALEYIVKSLSSLPDTDISLFSGLAGIAYALAALSKGLGDQELLKELLELLL 80 (343)
T ss_pred CCChHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHhCCCCCeeeecchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 79999999999999999999999998888888766532222 4789999999999999999999999888777766665
Q ss_pred hccC-----CCCCCcccccchhhHHHHHHHHhhHhCCCCCcHHHHHHHHHHHHHHhHHhhhcCCCCCcccccCCccCCcc
Q 015433 151 EIKL-----PSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAA 225 (407)
Q Consensus 151 ~~~~-----~~~~~~d~~~G~AG~l~~ll~l~~~~~~~~~~~~~i~~i~~~ii~~~~~~~~~~~~pl~~~~~~~~~~G~a 225 (407)
.+.. ......|+++|.||++++++.+++.++++.+ .+.+.++++.+++..........++ .....+..+.|||
T Consensus 81 ~~~~~~~~~~~~~~~d~~~G~aG~~~~ll~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~g~~ 158 (343)
T cd04434 81 LLVELILEDLKDLNYDLLSGLAGLLLALLLLYKTFGEEIF-LELIRKILDYLLELGKNGDGKIRWP-MYFPEGRVNLGLA 158 (343)
T ss_pred HhhhhhhcccCCCCcceeechHHHHHHHHHHHHhcCCcCH-HHHHHHHHHHHHHhhhhccCCCcee-eeccCCccccchh
Confidence 5421 1345689999999999999999998877665 4578888888888654322111111 0112345789999
Q ss_pred cchHHHHHHHHcccCCC---chHHHHHHHHHHHHHcccC-CCCCCCCC-CCCCCcccccccCchhHHHHHHHHHHHhCcH
Q 015433 226 HGLAGIMHVLMDMELKP---DEVEDVKGTLRYMIKNRFP-SGNYPSSE-GSESDRLVHWCHGAPGVTLTLAKAAEVFGEK 300 (407)
Q Consensus 226 HG~aGI~~~L~~~~~~~---~~~~~i~~~l~~~~~~~~~-~gnwp~~~-~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~~ 300 (407)
||.+||+++|+.+.... ...+.++.++.++.+.+.+ .++|++.. .......++||||++||++++..+++.++++
T Consensus 159 HG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~ 238 (343)
T cd04434 159 HGLAGILLALLLLYKKTVDKSLEALIKALLKYERRLQDDSGGFWWPSRSNGGNRFLVAWCHGAPGILLALLLAYKALGDD 238 (343)
T ss_pred hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCccccceecCCChhHHHHHHHHHHHcCcH
Confidence 99999999999986532 2345566667666444333 45565422 2233457899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCC--CCCCcccccchhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcC
Q 015433 301 EFLQAAVDAGEVVWKRGL--LKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPY 378 (407)
Q Consensus 301 ~~~~~~~~~~~~~~~~g~--~~~~~lCHG~aG~~~~ll~l~~~t~~~~~~~~a~~~~~~~~~~~~~~~~~g~~~~~~~~~ 378 (407)
++.+.++++++.++++.. ..++|||||.+|++++|+.+++.++++++.++|.+++.++.......... .......++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~lChG~~G~~~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~ 317 (343)
T cd04434 239 KYDEAAEKALELAWKRGLLELKNPGLCHGIAGNLLILLLLYKLTGDLKFLARALALALLLISHANGWLCG-GDSTGDRSP 317 (343)
T ss_pred HHHHHHHHHHHHHHHhhhccCCCCCcCcCccchHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhccc-CcCCCCCCc
Confidence 999999999999998876 36799999999999999999999999999999999888777654321110 012356799
Q ss_pred ccccchHHHHHHHHHccCC
Q 015433 379 SLFEGIGGMTHLFLDMIEP 397 (407)
Q Consensus 379 sL~~G~aGi~~~Ll~l~~p 397 (407)
|||+|+|||+++|+|+.+|
T Consensus 318 gl~~G~aGi~~~ll~~~~~ 336 (343)
T cd04434 318 GLMTGLAGIALALLRLLNP 336 (343)
T ss_pred hHHhhHHHHHHHHHHHhCC
Confidence 9999999999999999998
No 5
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=100.00 E-value=4.4e-42 Score=370.42 Aligned_cols=333 Identities=19% Similarity=0.235 Sum_probs=260.4
Q ss_pred hccCCCC--------CCCCCCCcccCcHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhcCCC----CCCceeeCCchHH
Q 015433 58 ETWGVSG--------KRVQDYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRD----SGRVTFICGRAGV 125 (407)
Q Consensus 58 ~~w~~~~--------~~~~~~~ly~G~~Gial~l~~l~~~~~~~~~~~~a~~~l~~~~~~~~~----~~~~~~~~G~~Gi 125 (407)
-+|.... ..|.+.+||+|.+||+++|+++++.+++++|.+.+.++++.+...... ..+.|+|+|.+|+
T Consensus 467 ~~Wi~~~~~~~~~~~~~~~~~~LY~G~aGIal~l~~l~~~t~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~gl~~G~aGi 546 (825)
T cd04792 467 INWIGLVLSDGDEWELSPLGNDLYDGSAGIALFLAYLGQLTGDERYTRLARKILDSLVKSLSELKTDDTGIGAFSGLGGI 546 (825)
T ss_pred HhhCCCcccCCCcEEEecCCCcccCChHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHhcccccccCceeEechhHH
Confidence 3886631 347899999999999999999999999999999888888876543211 2478999999999
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhhhcc--CCCCCCcccccchhhHHHHHHHHhhHhCCCCCcHHHHHHHHHHHHHHhHH
Q 015433 126 CALGAVLAKHAGDERLLDHYLTKFKEIK--LPSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRR 203 (407)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~G~AG~l~~ll~l~~~~~~~~~~~~~i~~i~~~ii~~~~~ 203 (407)
++++..+++.++++.+.+.+.+.++.+. ...+...|+++|.||++++++.+++.++++.+. +.+.++++++++....
T Consensus 547 ~~~L~~l~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~D~~~G~aGii~~Ll~l~~~~~~~~~l-~~a~~~~~~l~~~~~~ 625 (825)
T cd04792 547 LYALTHLGKLLKDDRLLNLAKEILDLIDELIEKDEKLDFISGAAGLILVLLSLYELFLSERFL-DLALKCGDHLLENASN 625 (825)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccCCCEeeecHHHHHHHHHHHhccCChHHH-HHHHHHHHHHHHhhhh
Confidence 9999999999998877665554444331 223456899999999999999999999877664 4677888888765432
Q ss_pred hhhcCCCCCcccccCCccCCcccchHHHHHHHHcccCCC---chHHHHHHHHHHHHHccc-CCCCCCCCCCCCCCccccc
Q 015433 204 LANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKP---DEVEDVKGTLRYMIKNRF-PSGNYPSSEGSESDRLVHW 279 (407)
Q Consensus 204 ~~~~~~~pl~~~~~~~~~~G~aHG~aGI~~~L~~~~~~~---~~~~~i~~~l~~~~~~~~-~~gnwp~~~~~~~~~~~~W 279 (407)
. ..+ ++.+.+..+.|||||.+||+++|++++... ...+.++++++++.+... ..++||.. .......+|
T Consensus 626 ~---~~~--~~~~~~~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~~~~~~~~~~w~~~--~~~~~~~~W 698 (825)
T cd04792 626 E---DGG--IGPAEQPNLTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKALKYERRLFSEEGWNWPRK--DGNSFSAAW 698 (825)
T ss_pred c---cCC--cccccccccccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHhhcCCCCc--CcCCCCCcc
Confidence 1 111 122234567899999999999999987543 236678888887744322 35689832 233456899
Q ss_pred ccCchhHHHHHHHHHHH--hCcHHHHHHHHHHHHHHHHhCCCCCCcccccchhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 015433 280 CHGAPGVTLTLAKAAEV--FGEKEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACF 357 (407)
Q Consensus 280 ChG~~Gi~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~lCHG~aG~~~~ll~l~~~t~~~~~~~~a~~~~~~ 357 (407)
|||++||+++++.++++ .+++.+.+.++++++.+++.+...++|||||.+|++++|+.+++.++++++.++|.+++..
T Consensus 699 ChG~~GI~lal~~~~~~~~~~d~~~~~~i~~~~~~~~~~~~~~~~slCHG~~Gil~~ll~~~~~~~~~~~~~~a~~~~~~ 778 (825)
T cd04792 699 CHGAPGILLARLELLKFNDLDDEELKEEIEIALKTTLKEGFGNNHSLCHGDLGNLEILLYAAKAFGDEKLQELANSLAIK 778 (825)
T ss_pred cCCcHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHhcCCCCCeecCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999999 7899999999999999988887778999999999999999999999999999999999998
Q ss_pred HHHHHhhhhhcCCCCCCCCcCccccchHHHHHHHHHccCCC
Q 015433 358 LYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPS 398 (407)
Q Consensus 358 ~~~~~~~~~~~g~~~~~~~~~sL~~G~aGi~~~Ll~l~~p~ 398 (407)
+++...+..+....+....++|||+|+|||+|+|+|+.+|+
T Consensus 779 l~~~~~~~~~~~g~~~~~~~~glm~G~aGIgy~LLrl~~p~ 819 (825)
T cd04792 779 VLSQGKKNGWLCGLPRGFESPGLMTGLAGIGYGLLRLAAPD 819 (825)
T ss_pred HHHHHHhcCccCCCCCCCCCchhhhhHHHHHHHHHhhhCCC
Confidence 88876541111112334578999999999999999999985
No 6
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=100.00 E-value=6.9e-42 Score=338.10 Aligned_cols=322 Identities=18% Similarity=0.199 Sum_probs=232.0
Q ss_pred ccCcHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhcCCCC-CCceeeCCchHHHHHHHHHHH-HcCChhHHHHHHHHhh
Q 015433 73 YTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRDS-GRVTFICGRAGVCALGAVLAK-HAGDERLLDHYLTKFK 150 (407)
Q Consensus 73 y~G~~Gial~l~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~-~~~~~~~G~~Gi~~~~~~l~~-~~~~~~~~~~~~~~~~ 150 (407)
|+|.+||++||+++++++++++|.+.|.++++++.+..... ...|+|+|.+|+++++..+++ ...+++..+.+.+.+.
T Consensus 1 y~G~~GIalf~~~l~~~~~~~~~~~~a~~~l~~~~~~l~~~~~~~s~f~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~ 80 (382)
T cd04793 1 SHGAPGIALLLSELAKHTKDEGYWERVHQYLSKALNYLLSLGYSSSLFSGAAGVAFALLILSDNGKRYQELLESLDELIK 80 (382)
T ss_pred CCcHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHccCcHhHHHHHHHHHHHHH
Confidence 78999999999999999999999999999888766532222 478999999999888877766 3333443333222221
Q ss_pred hc---c--------CCCCCCcccccchhhHHHHHHHHhhHhCCCCCcHHHHHHHHHHHHHHhHHhhhcCCCC-----Ccc
Q 015433 151 EI---K--------LPSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCP-----LMY 214 (407)
Q Consensus 151 ~~---~--------~~~~~~~d~~~G~AG~l~~ll~l~~~~~~~~~~~~~i~~i~~~ii~~~~~~~~~~~~p-----l~~ 214 (407)
.+ . ...+..+|+++|.||++.+|+.+++ .+... ...+.++++.+++....... ..++ ...
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~yD~i~G~aGi~~~Ll~~~~--~~~~~-~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~ 156 (382)
T cd04793 81 AIVRRRLEDAKSGEPPTPTNYDVISGLSGIGRYLLLRHE--PDSEL-LREILDYLVYLTEPLNQDIT-LYIWSENQPSET 156 (382)
T ss_pred HHHHHHHHHHhcCCCCCCCCCceeechHHHHHHHHhccC--cchhH-HHHHHHHHHHHHHHHhcCCC-CccCcCcCCCcc
Confidence 11 0 1334568999999999999998861 11111 23455666666554321100 0000 000
Q ss_pred c----ccCCccCCcccchHHHHHHHHcccC----CCchHHHHHHHHHHHHHccc--CCCCCCCCCC-----------CCC
Q 015433 215 E----WHGKKYWGAAHGLAGIMHVLMDMEL----KPDEVEDVKGTLRYMIKNRF--PSGNYPSSEG-----------SES 273 (407)
Q Consensus 215 ~----~~~~~~~G~aHG~aGI~~~L~~~~~----~~~~~~~i~~~l~~~~~~~~--~~gnwp~~~~-----------~~~ 273 (407)
+ ..+..++|||||++||+++|+.++. .++..+.++++++|+.+..+ .+++|++... ...
T Consensus 157 ~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 236 (382)
T cd04793 157 ESKEFPEGHINLGLAHGIAGPLALLALAKERGIRVDGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPN 236 (382)
T ss_pred ccccCCCccccccchhcchHHHHHHHHHHHcCCCcCChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCC
Confidence 0 1134578999999999999998853 33457889999999876554 3457654321 112
Q ss_pred CcccccccCchhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCC----CCCCcccccchhHHHHHHHHHHHhCCHHHHH
Q 015433 274 DRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGL----LKRVGICHGISGNTYVFLSLYRLTGNVEYLY 349 (407)
Q Consensus 274 ~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~~lCHG~aG~~~~ll~l~~~t~~~~~~~ 349 (407)
....+||||+|||++++..+++.++|+.+.+.+.++.+.++++.. ..+++||||.+|++++|+.+++.|+++++++
T Consensus 237 ~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lChG~~G~~~~l~~~~~~~~~~~~~~ 316 (382)
T cd04793 237 PFRDAWCYGTPGIARALQLAGKALDDQKLQEAAEKILKAALKDKKQLSKLISPTLCHGLAGLLFIFYLLYKDTNTNEFKS 316 (382)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhChhhhccCCCCCcCccHHHHHHHHHHHHHHhCCcHHHH
Confidence 246899999999999999999999999999999999988876532 3579999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhcCC--------CCCCCCcCccccchHHHHHHHHHccCCC
Q 015433 350 RAKAFACFLYDRAQKLIAEGK--------MHGGDRPYSLFEGIGGMTHLFLDMIEPS 398 (407)
Q Consensus 350 ~a~~~~~~~~~~~~~~~~~g~--------~~~~~~~~sL~~G~aGi~~~Ll~l~~p~ 398 (407)
+|.++++.++++..+....+. ......++|||+|.|||+++|+++.+|+
T Consensus 317 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~G~aGI~l~LL~~~~~~ 373 (382)
T cd04793 317 ALEYLLNQIISSYSEEEPFGFKDIEETTGSIEWLDDSGLLEGAAGIALTLLSYYNGE 373 (382)
T ss_pred HHHHHHHHHHHHhcccccccccchhhhcccccccCCceeecCHHHHHHHHHHhhhCC
Confidence 999999998887543211110 1124478999999999999999999987
No 7
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=100.00 E-value=3.8e-40 Score=318.41 Aligned_cols=314 Identities=17% Similarity=0.218 Sum_probs=234.9
Q ss_pred ccCcHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhcCCCCCCceeeCCchHHHHHHHHHHHHcCChhHHHHHHHHhhhc
Q 015433 73 YTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRDSGRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEI 152 (407)
Q Consensus 73 y~G~~Gial~l~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~G~~Gi~~~~~~l~~~~~~~~~~~~~~~~~~~~ 152 (407)
|+|.+||++++.+++. ..+.+.+.++++.+........++|+|+|.+|+++++.. ++..+..+++++.+.+.
T Consensus 1 ~~G~aGi~~~l~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~gl~~G~~Gi~~~l~~----~~~~~~~~~~~~~~~~~ 72 (321)
T cd04791 1 AHGAAGVLMALLRSGF----GDYAENALDWIEEAATRELSGSPPGLYDGRAGIAWVLIE----LGHPARAKALFDTLLDE 72 (321)
T ss_pred CchHHHHHHHHHHhcC----CCCCchHHHHHHHHhhccCCCCCCccccChhhHHHHHHH----cCCHHHHHHHHHHHhcc
Confidence 7899999999999871 112333456666655433334578999999999887654 34444444444444322
Q ss_pred cCCCCCCcccccchhhHHHHHHHHhhHhCCCCCcHHHHHHHHHHHHHHhHHhhhcCCCCCcccccCCccCCcccchHHHH
Q 015433 153 KLPSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIM 232 (407)
Q Consensus 153 ~~~~~~~~d~~~G~AG~l~~ll~l~~~~~~~~~~~~~i~~i~~~ii~~~~~~~~~~~~pl~~~~~~~~~~G~aHG~aGI~ 232 (407)
...+.+.|+++|.||++++++.+++. +++++. +.++++++.+++..... ...+ .|...+..+.|++||.|||+
T Consensus 73 -~~~~~~~dl~~G~aG~~~~ll~l~~~-~~~~~l-~~a~~~~~~l~~~~~~~---~~~~-~~~~~~~~~~G~~hG~aGi~ 145 (321)
T cd04791 73 -PSANLNIDLASGLAGIGLALLYFART-GDPALL-EAAAKIAELLAEALERG---DPAL-LWPDFDRVDHGLLHGWAGIA 145 (321)
T ss_pred -cccccCCccccchHHHHHHHHHHHhc-CChHHH-HHHHHHHHHHHHHhhcc---cccc-ccccCCCCCCccccCcHHHH
Confidence 22335689999999999999999999 887775 47778888887764321 1111 22233456789999999999
Q ss_pred HHHHcccCCC---chHHHHHHHHHHHHHccc-CCCCCCCCCCCCCCcccccccCchhHHHHHHHHHHHhCcHHHHHHHHH
Q 015433 233 HVLMDMELKP---DEVEDVKGTLRYMIKNRF-PSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVD 308 (407)
Q Consensus 233 ~~L~~~~~~~---~~~~~i~~~l~~~~~~~~-~~gnwp~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~~~~ 308 (407)
++|++++... +..+.++++++++.+... ..++|.... +..+..++||||++||++++.+++++++|+++.+.+++
T Consensus 146 ~~L~~l~~~t~d~~~l~~A~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~wchG~aGi~~~l~~l~~~~~d~~~~~~a~~ 224 (321)
T cd04791 146 LFLLRLYKATGDSRYLELAEEALDKELARAVVDDGGLLQVD-EGARLLPYLCSGSAGLGLLMLRLEAITGDKRWRDEADG 224 (321)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHhhccCCCCceEcC-CCCccCcccCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999987643 347788889998876543 345554332 22345789999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCcccccchhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhcCCCCCC---CCcCccccchH
Q 015433 309 AGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGG---DRPYSLFEGIG 385 (407)
Q Consensus 309 ~~~~~~~~g~~~~~~lCHG~aG~~~~ll~l~~~t~~~~~~~~a~~~~~~~~~~~~~~~~~g~~~~~---~~~~sL~~G~a 385 (407)
+.+.+++.+ ..++++|||.+|++.+|+.+++.+++++|.++|.++++++++...... ..+.+++ ..++|||+|.|
T Consensus 225 ~~~~~~~~~-~~~~~lchG~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~gl~~G~a 302 (321)
T cd04791 225 IAHAALSSC-YANPGLFSGTAGLGAHLNDLAAEGDNALYKAAAERLALYLIATADEIE-GPVFPGDQGLRISTDLATGTA 302 (321)
T ss_pred HHHHHhhhh-ccCccccCCcHhHHHHHHhhcccccChHHHHHHHHHHHHhccccCCcc-ccccCCccceeeccccccchH
Confidence 999888665 467999999999999999999999999999999999999887653211 0012222 35799999999
Q ss_pred HHHHHHHHccCCCCCCCCC
Q 015433 386 GMTHLFLDMIEPSEARFPA 404 (407)
Q Consensus 386 Gi~~~Ll~l~~p~~~~fp~ 404 (407)
||+++|+|+.+++..+||.
T Consensus 303 Gi~~~ll~l~~~~~~~~p~ 321 (321)
T cd04791 303 GILLFLLRLLTRARSWLPF 321 (321)
T ss_pred HHHHHHHHHhcCCcccCCC
Confidence 9999999999998889994
No 8
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=100.00 E-value=1.4e-39 Score=328.21 Aligned_cols=309 Identities=17% Similarity=0.263 Sum_probs=251.1
Q ss_pred CCCCCCCcccCcHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhcC-CCC--CCceeeCCchHHHHHHHHHHHHcCChhH
Q 015433 65 KRVQDYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSAS-RDS--GRVTFICGRAGVCALGAVLAKHAGDERL 141 (407)
Q Consensus 65 ~~~~~~~ly~G~~Gial~l~~l~~~~~~~~~~~~a~~~l~~~~~~~-~~~--~~~~~~~G~~Gi~~~~~~l~~~~~~~~~ 141 (407)
.+|.+.++|+|.+||++|++++..+|+...|.+.|.+.++...+.. ... .++|.|+|.+|..+++..++..++|...
T Consensus 638 lsp~g~dlydG~~GI~LF~ayL~~vtgk~~Y~~ia~~~L~~~~~sv~~~~~~~~iga~~G~~g~~yal~~I~~~~~~~~l 717 (963)
T COG4403 638 LSPLGNDLYDGSAGIALFFAYLALVTGKDYYKEIAIKALQDSRKSVNNNLNPINIGAFTGLSGYFYALWKIYSVTRDNYL 717 (963)
T ss_pred eecCCchhhcCcchHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhhhhccCCcccccccccchhhhhhHHHHHhcccHHH
Confidence 4688999999999999999999999999999999988887654431 111 4589999999988888899999999877
Q ss_pred HHHHHHHhhhc--cCCCCCCcccccchhhHHHHHHHHhhHhCCCCCcHHHHHHHHHHHHHHhHHhhhcCCCCCcccccCC
Q 015433 142 LDHYLTKFKEI--KLPSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGK 219 (407)
Q Consensus 142 ~~~~~~~~~~~--~~~~~~~~d~~~G~AG~l~~ll~l~~~~~~~~~~~~~i~~i~~~ii~~~~~~~~~~~~pl~~~~~~~ 219 (407)
.+.+.+.+..+ ....+...|++.|.||++.+|+.+|+.+.++++++ .+..+++.+.+...... . |. +
T Consensus 718 ~~~~~~~i~~le~~v~~~~~~d~i~Gl~g~i~~L~~iYk~~~epk~l~-~ais~~~~l~~~~v~~d---~------s~-~ 786 (963)
T COG4403 718 IQSAENSIRHLEILVQKSKDPDFINGLAGVICVLVSIYKLTDEPKFLE-LAISLGRILMEKIVGND---S------SE-T 786 (963)
T ss_pred HHHHHHHHHHHHHHHhhccCcchhhccHHHHHHHHHHHhhccchHHHH-HHHHHHHHHHHHhhccc---c------cc-c
Confidence 77776666543 23345568999999999999999999988887764 66677787776543221 1 33 4
Q ss_pred ccCCcccchHHHHHHHHcccCCCch---HHHHHHHHHHHHHcccCCCCCCCCCCCCCCcccccccCchhHHHHHHHHHHH
Q 015433 220 KYWGAAHGLAGIMHVLMDMELKPDE---VEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEV 296 (407)
Q Consensus 220 ~~~G~aHG~aGI~~~L~~~~~~~~~---~~~i~~~l~~~~~~~~~~gnwp~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~ 296 (407)
.-+||+||++||+++|+.++..++. .+.+++.+.++ +.+|.+ ....||||+|||+.++....+.
T Consensus 787 ~l~gfshg~sgi~~tL~~ly~~T~e~~l~~~i~e~~~~E-r~~f~~------------~~~~Wc~g~~gilv~rl~l~~~ 853 (963)
T COG4403 787 VLLGFSHGASGIILTLLKLYEATGEESLLKKIKELLSYE-RMKFSD------------KFTRWCSGAPGILVSRLLLKKI 853 (963)
T ss_pred eecccccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-HHHHHH------------HHHHHhcCCcceeechhhhhhh
Confidence 5689999999999999999876543 56677777666 334422 1468999999999999999999
Q ss_pred hCcHHHHHHHHHHHHHHHHhCCCCCCcccccchhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCC
Q 015433 297 FGEKEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDR 376 (407)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~g~~~~~~lCHG~aG~~~~ll~l~~~t~~~~~~~~a~~~~~~~~~~~~~~~~~g~~~~~~~ 376 (407)
+.|+.+.++++.++..+.+.|+. +.++|||.+|++.+++.+++.+++++.++-|.+.+..+.+...+....-..+.++.
T Consensus 854 ~~de~i~~Ei~~~l~~~i~~glg-n~~~Chgdfg~ie~l~~~a~~l~~~~l~es~~~~~~~~~~k~~~~g~~~~~~~~~~ 932 (963)
T COG4403 854 YDDESIDREIQQALKTIINNGLG-NDSLCHGDFGIIEVLLHYAKILSDSELLESANKLANELVSKAITYGINQGLNHANE 932 (963)
T ss_pred cchHHHHHHHHHHHHHHHhccCC-CccccccchHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccccccccCCCccc
Confidence 99999999999999999999998 89999999999999999999999999999999988888777654211111222567
Q ss_pred cCccccchHHHHHHHHHccCCC
Q 015433 377 PYSLFEGIGGMTHLFLDMIEPS 398 (407)
Q Consensus 377 ~~sL~~G~aGi~~~Ll~l~~p~ 398 (407)
++|||+|++|++|.|+|+..|+
T Consensus 933 ~~glm~GvtGigY~lLR~~~p~ 954 (963)
T COG4403 933 SFGLMNGVTGIGYSLLRISSPK 954 (963)
T ss_pred hhHHHhhhHHHHHHHHHHhCcc
Confidence 9999999999999999999983
No 9
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=99.94 E-value=1.3e-25 Score=218.82 Aligned_cols=257 Identities=17% Similarity=0.186 Sum_probs=183.1
Q ss_pred eCCchHHHHHHHHHHHH----cCChhHHHHHHHHhhhcc--CCCCCCcccccchhhHHHHHHHHhhHhCCCCCcHHHHHH
Q 015433 119 ICGRAGVCALGAVLAKH----AGDERLLDHYLTKFKEIK--LPSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRA 192 (407)
Q Consensus 119 ~~G~~Gi~~~~~~l~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~G~AG~l~~ll~l~~~~~~~~~~~~~i~~ 192 (407)
|+|.+|+++++..+++. ++++++.+.+.+.+..+. +..+...|++.|.+|++++++.+++.++++++.+ .+.+
T Consensus 1 Y~G~~Gi~~~l~~l~~~~~~~~~~~~y~~~a~~~i~~~~~~~~~~~~~~~~~G~aGi~~~l~~l~~~~~d~~~~~-~~~~ 79 (343)
T cd04794 1 YTGAAGIAYLFLQLYEVPPLLTNDQTYLSWALEYIKASLRAIPDDRRISFLCGNAGVYAVGAAVYHYLKDEDEVD-EFLS 79 (343)
T ss_pred CcChHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHHhhcccccCCCccCCcHHHHHHHHHHHHHhcChHHHH-HHHH
Confidence 58999999888999999 888888777666554431 2235567999999999999999999998876544 4445
Q ss_pred HHHHHHHHhHHhhhcCCCCCcccccCCccCCcccchHHHHHHHHcccCCCc----hHHHHHHHHHHHHHc---cc--CCC
Q 015433 193 VVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPD----EVEDVKGTLRYMIKN---RF--PSG 263 (407)
Q Consensus 193 i~~~ii~~~~~~~~~~~~pl~~~~~~~~~~G~aHG~aGI~~~L~~~~~~~~----~~~~i~~~l~~~~~~---~~--~~g 263 (407)
.++.+++...... . ....++.||.||++++|+.++.... ..+.+.+.++.+++. .. ...
T Consensus 80 ~~~~~~~~~~~~~---~---------~~~~d~l~G~aG~l~~Ll~l~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~ 147 (343)
T cd04794 80 KFLQLLESVVSPD---S---------GLPDELLYGRAGYLYALLFLNKKFGFKKIPSSLIKSICDAILESGRTGAAKYRA 147 (343)
T ss_pred HHHHHHHHHhhcc---c---------CCchhhhccHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHhhhccCC
Confidence 5555554321100 0 1124788999999999999864321 234444444433322 11 122
Q ss_pred CCCCCCCCCCCcccccccCchhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh----CCC----------CCCcccccch
Q 015433 264 NYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKR----GLL----------KRVGICHGIS 329 (407)
Q Consensus 264 nwp~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~----------~~~~lCHG~a 329 (407)
+||...........+||||++||+.+++.+.+.++++++.+.++++++.+.+. |.. ...++|||.+
T Consensus 148 ~~~~~~~~~~~~~~G~aHG~aGI~~~L~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~g~w~~~~~~~~~~~~~~wChG~~ 227 (343)
T cd04794 148 PCPLMYEWHGKEYLGAAHGLAGILYILLQTPLFLLKPSLAPLIKRSLDYLLSLQFPSGNFPSSLGNRKRDRLVQWCHGAP 227 (343)
T ss_pred CCCccccccCceecchhhhHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHHHhhccCCCCCCccCCCCCCccccccCCCc
Confidence 46644332334468999999999999999999999999999999998776543 321 1257999999
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcCccccchHHHHHHHHHccCCC
Q 015433 330 GNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPS 398 (407)
Q Consensus 330 G~~~~ll~l~~~t~~~~~~~~a~~~~~~~~~~~~~~~~~g~~~~~~~~~sL~~G~aGi~~~Ll~l~~p~ 398 (407)
|++.+++.+++.++++++.+.+.+..+.+.++ |. ....++||+|.+|+++.|+++.++.
T Consensus 228 Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~---~~~~~~lCHG~~G~~~~lL~~~~~~ 286 (343)
T cd04794 228 GIVYLLAKAYLVFKEEQYLEAAIKCGELIWKR-------GL---LKKGPGLCHGIAGNAYAFLLLYRLT 286 (343)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh-------CC---ccCCCccccCccchHHHHHHHHHHh
Confidence 99999999999999999988877766544321 11 2246899999999999999987654
No 10
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=99.94 E-value=9.4e-25 Score=212.25 Aligned_cols=260 Identities=19% Similarity=0.177 Sum_probs=179.5
Q ss_pred CCCCcccCcHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhcCC---CCCCceeeCCchHHHHHHHHHHHHcCChhHHHH
Q 015433 68 QDYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASR---DSGRVTFICGRAGVCALGAVLAKHAGDERLLDH 144 (407)
Q Consensus 68 ~~~~ly~G~~Gial~l~~l~~~~~~~~~~~~a~~~l~~~~~~~~---~~~~~~~~~G~~Gi~~~~~~l~~~~~~~~~~~~ 144 (407)
.+.++|+|.+|+++++.++++.++++++++.+.++++.+.+... .....+++.|.+|+++++..+++.++++...+.
T Consensus 44 ~~~~~~~G~~Gi~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~G~aG~~~~ll~~~~~~~~~~~~~~ 123 (343)
T cd04434 44 TDISLFSGLAGIAYALAALSKGLGDQELLKELLELLLLLVELILEDLKDLNYDLLSGLAGLLLALLLLYKTFGEEIFLEL 123 (343)
T ss_pred CCeeeecchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhcccCCCCcceeechHHHHHHHHHHHHhcCCcCHHHH
Confidence 57799999999999999999999999999888888877654321 345789999999999988888888777665554
Q ss_pred HHHHhhhc---cC-------------CCCCCcccccchhhHHHHHHHHhhHhCCCCCcHHHHHHHHHHHHHHhHHhhhcC
Q 015433 145 YLTKFKEI---KL-------------PSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRG 208 (407)
Q Consensus 145 ~~~~~~~~---~~-------------~~~~~~d~~~G~AG~l~~ll~l~~~~~~~~~~~~~i~~i~~~ii~~~~~~~~~~ 208 (407)
+.+..+.+ .. ......++.||.+|++++++.+++.+.++.+ .+.++++.....+ .... ...
T Consensus 124 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~HG~~Gi~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~-~~~ 200 (343)
T cd04434 124 IRKILDYLLELGKNGDGKIRWPMYFPEGRVNLGLAHGLAGILLALLLLYKKTVDKSL-EALIKALLKYERR-LQDD-SGG 200 (343)
T ss_pred HHHHHHHHHHhhhhccCCCceeeeccCCccccchhhhhHHHHHHHHHHHHhcCChhH-HHHHHHHHHHHHH-ccCC-CCC
Confidence 43333222 10 0112358999999999999999998854433 2233333332211 1100 000
Q ss_pred CCC-CcccccCCccCCcccchHHHHHHHHcccCCC---chHHHHHHHHHHHHHcccCCCCCCCCCCCCCCcccccccCch
Q 015433 209 RCP-LMYEWHGKKYWGAAHGLAGIMHVLMDMELKP---DEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAP 284 (407)
Q Consensus 209 ~~p-l~~~~~~~~~~G~aHG~aGI~~~L~~~~~~~---~~~~~i~~~l~~~~~~~~~~gnwp~~~~~~~~~~~~WChG~~ 284 (407)
.++ ..-........+||||.+||+.+++++.... ...+.+++.++...+..... ....+||||.+
T Consensus 201 ~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~lChG~~ 269 (343)
T cd04434 201 FWWPSRSNGGNRFLVAWCHGAPGILLALLLAYKALGDDKYDEAAEKALELAWKRGLLE-----------LKNPGLCHGIA 269 (343)
T ss_pred CCCCCCCCCCccccceecCCChhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhhcc-----------CCCCCcCcCcc
Confidence 000 0000113456899999999999999986543 23455666665554422111 23579999999
Q ss_pred hHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh----------CCCCCCcccccchhHHHHHHHHHHH
Q 015433 285 GVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKR----------GLLKRVGICHGISGNTYVFLSLYRL 341 (407)
Q Consensus 285 Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~~~~~~lCHG~aG~~~~ll~l~~~ 341 (407)
|++.++..+++.++++++.+.+.+....+... +...++|||+|.+|++++++++.+.
T Consensus 270 G~~~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~G~aGi~~~ll~~~~~ 336 (343)
T cd04434 270 GNLLILLLLYKLTGDLKFLARALALALLLISHANGWLCGGDSTGDRSPGLMTGLAGIALALLRLLNP 336 (343)
T ss_pred chHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhcccCcCCCCCCchHHhhHHHHHHHHHHHhCC
Confidence 99999999999999999999888877655432 1224699999999999999988653
No 11
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=99.92 E-value=1.4e-23 Score=226.82 Aligned_cols=255 Identities=22% Similarity=0.248 Sum_probs=182.6
Q ss_pred CCCCcccCcHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhcCCCCCCceeeCCchHHHHHHHHHHHHcCChhHHHHHHH
Q 015433 68 QDYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRDSGRVTFICGRAGVCALGAVLAKHAGDERLLDHYLT 147 (407)
Q Consensus 68 ~~~~ly~G~~Gial~l~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~G~~Gi~~~~~~l~~~~~~~~~~~~~~~ 147 (407)
.+.++|+|.+|+++++.++++.++++.|.+.+.++++.+..........+++.|.+|++.++..+++.++++...+.+.+
T Consensus 535 ~~~gl~~G~aGi~~~L~~l~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~D~~~G~aGii~~Ll~l~~~~~~~~~l~~a~~ 614 (825)
T cd04792 535 TGIGAFSGLGGILYALTHLGKLLKDDRLLNLAKEILDLIDELIEKDEKLDFISGAAGLILVLLSLYELFLSERFLDLALK 614 (825)
T ss_pred cCceeEechhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccCCCEeeecHHHHHHHHHHHhccCChHHHHHHHH
Confidence 57899999999999999999999999999999888887655333345689999999999888889998888877766655
Q ss_pred Hhhhcc---CCC---------CCCcccccchhhHHHHHHHHhhHhCCCCCcHHHHHHHHHHHHHHhHHhhhcCCCCCccc
Q 015433 148 KFKEIK---LPS---------DLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYE 215 (407)
Q Consensus 148 ~~~~~~---~~~---------~~~~d~~~G~AG~l~~ll~l~~~~~~~~~~~~~i~~i~~~ii~~~~~~~~~~~~pl~~~ 215 (407)
.++.+. ... ....++.||.||++++|+.+++.++++.+. +.+.++.+....... .....||. .
T Consensus 615 ~~~~l~~~~~~~~~~~~~~~~~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~-~~a~~~l~~~~~~~~--~~~~~w~~--~ 689 (825)
T cd04792 615 CGDHLLENASNEDGGIGPAEQPNLTGFAHGASGIAWALLRLYKVTGDSRYL-KLAHKALKYERRLFS--EEGWNWPR--K 689 (825)
T ss_pred HHHHHHHhhhhccCCcccccccccccccccHHHHHHHHHHHHHHcCcHHHH-HHHHHHHHHHHHhcC--HhhcCCCC--c
Confidence 554331 111 124689999999999999999999886653 234444433211110 01112220 0
Q ss_pred ccCCccCCcccchHHHHHHHHcccCC--Cch---HHHHHHHHHHHHHcccCCCCCCCCCCCCCCcccccccCchhHHHHH
Q 015433 216 WHGKKYWGAAHGLAGIMHVLMDMELK--PDE---VEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTL 290 (407)
Q Consensus 216 ~~~~~~~G~aHG~aGI~~~L~~~~~~--~~~---~~~i~~~l~~~~~~~~~~gnwp~~~~~~~~~~~~WChG~~Gi~~~l 290 (407)
.......+||||.+||+++++.+... .+. .+.++.+++...+ .+.+ ..++||||.+|++.++
T Consensus 690 ~~~~~~~~WChG~~GI~lal~~~~~~~~~~d~~~~~~i~~~~~~~~~----~~~~---------~~~slCHG~~Gil~~l 756 (825)
T cd04792 690 DGNSFSAAWCHGAPGILLARLELLKFNDLDDEELKEEIEIALKTTLK----EGFG---------NNHSLCHGDLGNLEIL 756 (825)
T ss_pred CcCCCCCcccCCcHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHH----hcCC---------CCCeecCCCcchHHHH
Confidence 11234679999999999999998654 322 3455666655433 1211 1368999999999999
Q ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHh----C----CC---CCCcccccchhHHHHHHHHHH
Q 015433 291 AKAAEVFGEKEFLQAAVDAGEVVWKR----G----LL---KRVGICHGISGNTYVFLSLYR 340 (407)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~----g----~~---~~~~lCHG~aG~~~~ll~l~~ 340 (407)
..+++.++++++.+.+.+..+.+.+. + .. .++|||+|.+|+++.|++++.
T Consensus 757 l~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~g~~~~~~~~glm~G~aGIgy~LLrl~~ 817 (825)
T cd04792 757 LYAAKAFGDEKLQELANSLAIKVLSQGKKNGWLCGLPRGFESPGLMTGLAGIGYGLLRLAA 817 (825)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCccCCCCCCCCCchhhhhHHHHHHHHHhhhC
Confidence 99999999999998888776554322 2 21 359999999999999998865
No 12
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=99.91 E-value=4.8e-23 Score=199.00 Aligned_cols=247 Identities=16% Similarity=0.128 Sum_probs=173.9
Q ss_pred CCCCcccCcHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhcCCCCCCceeeCCchHHHHHHHHHHHHcCChhHHHHHHH
Q 015433 68 QDYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRDSGRVTFICGRAGVCALGAVLAKHAGDERLLDHYLT 147 (407)
Q Consensus 68 ~~~~ly~G~~Gial~l~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~G~~Gi~~~~~~l~~~~~~~~~~~~~~~ 147 (407)
.+.++|+|.+||++++.++++. +.+.++++.+.+......+.+++.|.+|++.++..+++. +++++.+.+.+
T Consensus 38 ~~~gl~~G~~Gi~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~dl~~G~aG~~~~ll~l~~~-~~~~~l~~a~~ 109 (321)
T cd04791 38 SPPGLYDGRAGIAWVLIELGHP-------ARAKALFDTLLDEPSANLNIDLASGLAGIGLALLYFART-GDPALLEAAAK 109 (321)
T ss_pred CCCccccChhhHHHHHHHcCCH-------HHHHHHHHHHhcccccccCCccccchHHHHHHHHHHHhc-CChHHHHHHHH
Confidence 4679999999999999986542 234445554433322335789999999999888888988 88887766555
Q ss_pred Hhhhc---cC----------CCCCCcccccchhhHHHHHHHHhhHhCCCCCcHHHHHHHHHHHHHHhHHhhhcCCCCCcc
Q 015433 148 KFKEI---KL----------PSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMY 214 (407)
Q Consensus 148 ~~~~~---~~----------~~~~~~d~~~G~AG~l~~ll~l~~~~~~~~~~~~~i~~i~~~ii~~~~~~~~~~~~pl~~ 214 (407)
..+.+ .. ......++.+|.||++++|+.+++.++++++. +.++++++++++..... ...+. ..
T Consensus 110 ~~~~l~~~~~~~~~~~~~~~~~~~~~G~~hG~aGi~~~L~~l~~~t~d~~~l-~~A~~~~~~~~~~~~~~--~~g~~-~~ 185 (321)
T cd04791 110 IAELLAEALERGDPALLWPDFDRVDHGLLHGWAGIALFLLRLYKATGDSRYL-ELAEEALDKELARAVVD--DGGLL-QV 185 (321)
T ss_pred HHHHHHHHhhccccccccccCCCCCCccccCcHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHhhccC--CCCce-Ec
Confidence 44332 00 01123589999999999999999999998775 35666666665543211 11110 00
Q ss_pred cccCCccCCcccchHHHHHHHHcccCCCc---hHHHHHHHHHHHHHcccCCCCCCCCCCCCCCcccccccCchhHHHHHH
Q 015433 215 EWHGKKYWGAAHGLAGIMHVLMDMELKPD---EVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLA 291 (407)
Q Consensus 215 ~~~~~~~~G~aHG~aGI~~~L~~~~~~~~---~~~~i~~~l~~~~~~~~~~gnwp~~~~~~~~~~~~WChG~~Gi~~~l~ 291 (407)
...+....+||||.+||++++++++...+ ..+.++++++...+. + | ..++||||.+|++.++.
T Consensus 186 ~~~~~~~~~wchG~aGi~~~l~~l~~~~~d~~~~~~a~~~~~~~~~~----~-~---------~~~~lchG~~G~~~~l~ 251 (321)
T cd04791 186 DEGARLLPYLCSGSAGLGLLMLRLEAITGDKRWRDEADGIAHAALSS----C-Y---------ANPGLFSGTAGLGAHLN 251 (321)
T ss_pred CCCCccCcccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhh----h-c---------cCccccCCcHhHHHHHH
Confidence 01123467899999999999999865432 345666666655331 1 1 23689999999999999
Q ss_pred HHHHHhCcHHHHHHHHHHHHHHHHh----C-C--------CCCCcccccchhHHHHHHHHHH
Q 015433 292 KAAEVFGEKEFLQAAVDAGEVVWKR----G-L--------LKRVGICHGISGNTYVFLSLYR 340 (407)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~----g-~--------~~~~~lCHG~aG~~~~ll~l~~ 340 (407)
.+++.++|+++.+.+.+..+.+.+. + . ..+++|++|.+|++++|+++.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~G~aGi~~~ll~l~~ 313 (321)
T cd04791 252 DLAAEGDNALYKAAAERLALYLIATADEIEGPVFPGDQGLRISTDLATGTAGILLFLLRLLT 313 (321)
T ss_pred hhcccccChHHHHHHHHHHHHhccccCCccccccCCccceeeccccccchHHHHHHHHHHhc
Confidence 9999999999999999988776532 1 1 1248999999999999998865
No 13
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=99.90 E-value=1.8e-22 Score=199.64 Aligned_cols=266 Identities=17% Similarity=0.137 Sum_probs=172.8
Q ss_pred eCCchHHHHHHHHHHHHcCChhHHHHHHHHhhhcc--CCCC-CCcccccchhhHHHHHHHHhh-HhCCCCCcHHHHHHHH
Q 015433 119 ICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIK--LPSD-LPNELLYGRVGFLWACSFLNK-HMGKDTISTAQMRAVV 194 (407)
Q Consensus 119 ~~G~~Gi~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~d~~~G~AG~l~~ll~l~~-~~~~~~~~~~~i~~i~ 194 (407)
+.|.+|++.+++.+++.++++++.+.+.+.+..+. +... ...++.+|.+|+++++..+.+ ...++.+. +.+.++.
T Consensus 1 y~G~~GIalf~~~l~~~~~~~~~~~~a~~~l~~~~~~l~~~~~~~s~f~G~~Gi~~al~~~~~~~~~~~~~~-~~~~~~~ 79 (382)
T cd04793 1 SHGAPGIALLLSELAKHTKDEGYWERVHQYLSKALNYLLSLGYSSSLFSGAAGVAFALLILSDNGKRYQELL-ESLDELI 79 (382)
T ss_pred CCcHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHccCcHhHHHHH-HHHHHHH
Confidence 47999999999999999988877665544443321 1112 356899999999999998877 22222221 2333344
Q ss_pred HHHHHHhHHhhhcCCCCCcccccCCccCCcccchHHHHHHHHccc-CCCchHHHHHHHHHHHHHcccC--CCCCCCCCC-
Q 015433 195 DEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDME-LKPDEVEDVKGTLRYMIKNRFP--SGNYPSSEG- 270 (407)
Q Consensus 195 ~~ii~~~~~~~~~~~~pl~~~~~~~~~~G~aHG~aGI~~~L~~~~-~~~~~~~~i~~~l~~~~~~~~~--~gnwp~~~~- 270 (407)
..+++......+. .+. ......+++||.|||+.+|+.++ ...+....+.+.++.+.+.... .+.|+....
T Consensus 80 ~~l~~~~~~~~~~--~~~----~~~~~yD~i~G~aGi~~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 153 (382)
T cd04793 80 KAIVRRRLEDAKS--GEP----PTPTNYDVISGLSGIGRYLLLRHEPDSELLREILDYLVYLTEPLNQDITLYIWSENQP 153 (382)
T ss_pred HHHHHHHHHHHhc--CCC----CCCCCCceeechHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhcCCCCccCcCcCC
Confidence 4443322111110 110 01233699999999999999886 3333334455555555443221 112332210
Q ss_pred ---C-----CCCcccccccCchhHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHh-------------------------
Q 015433 271 ---S-----ESDRLVHWCHGAPGVTLTLAKAAEVF-GEKEFLQAAVDAGEVVWKR------------------------- 316 (407)
Q Consensus 271 ---~-----~~~~~~~WChG~~Gi~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~------------------------- 316 (407)
. ......+||||++||+.+|..+++.. .++.+.+.+.++++...+.
T Consensus 154 ~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 233 (382)
T cd04793 154 SETESKEFPEGHINLGLAHGIAGPLALLALAKERGIRVDGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPN 233 (382)
T ss_pred CccccccCCCccccccchhcchHHHHHHHHHHHcCCCcCChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccc
Confidence 0 11235699999999999999999887 7888888888776542110
Q ss_pred -CCCCCCcccccchhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcCccccchHHHHHHHHHcc
Q 015433 317 -GLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMI 395 (407)
Q Consensus 317 -g~~~~~~lCHG~aG~~~~ll~l~~~t~~~~~~~~a~~~~~~~~~~~~~~~~~g~~~~~~~~~sL~~G~aGi~~~Ll~l~ 395 (407)
.....++||||.+|++.+++.+++.++++.+.+.|.+..+.+...... .....+++||+|.+|++++|+++.
T Consensus 234 ~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~lChG~~G~~~~l~~~~ 306 (382)
T cd04793 234 NPNPFRDAWCYGTPGIARALQLAGKALDDQKLQEAAEKILKAALKDKKQ-------LSKLISPTLCHGLAGLLFIFYLLY 306 (382)
T ss_pred cCCCCCCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhChhh-------hccCCCCCcCccHHHHHHHHHHHH
Confidence 001237899999999999999999999999998888776665543211 001368899999999999999987
Q ss_pred CCC
Q 015433 396 EPS 398 (407)
Q Consensus 396 ~p~ 398 (407)
++.
T Consensus 307 ~~~ 309 (382)
T cd04793 307 KDT 309 (382)
T ss_pred HHh
Confidence 654
No 14
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=99.83 E-value=1.2e-20 Score=184.65 Aligned_cols=280 Identities=18% Similarity=0.188 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCcHHHHHHHHHHhhhcCChHHH-HHHHHHHHHHHhcCCCCCC--ceee
Q 015433 43 TLKNSALALKQTVVNETWGVSGKRVQDYTLYTGALGTAYLLFKAYQVTKNDNEL-KLCCDIVEACDSASRDSGR--VTFI 119 (407)
Q Consensus 43 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ly~G~~Gial~l~~l~~~~~~~~~~-~~a~~~l~~~~~~~~~~~~--~~~~ 119 (407)
++.+.+.++.+.+... ... ....+.++|+|.+|+++++..+++.++++.+. +.+..+.+.+.+....... .+++
T Consensus 29 ~~~~~~~~~l~~~~~~--~~~-~~~~~~gl~~G~~Gi~~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~D~l 105 (355)
T PF05147_consen 29 KYLDLAEKLLEKLINY--IEN-NPYDSIGLFSGLAGIAYALSYLSKRLGDEKYIEELLKRILNIIENSISNDSNNDYDLL 105 (355)
T ss_dssp HHHHHHHHHHHHHCCC--HHC-C--S--STTTSCHHHHHHHHHHCCCTCHHHHHHHHHHHHHHCHHHHHHCT--GGCSTT
T ss_pred HHHHHHHHHHHHHHHH--HHh-ccCcCCcccCChHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhcccccchhh
Confidence 4556666666665422 111 11228899999999999999999887766554 3333333332222111112 7899
Q ss_pred CCchHHHHHHHHHHHHcCChhHHHHHHHHhhhcc---CC-------------C-CCCcccccchhhHHHHHHHHh-hHhC
Q 015433 120 CGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIK---LP-------------S-DLPNELLYGRVGFLWACSFLN-KHMG 181 (407)
Q Consensus 120 ~G~~Gi~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~-------------~-~~~~d~~~G~AG~l~~ll~l~-~~~~ 181 (407)
.|.+|++.++..+++.++++...+.+.+.++.+. .. . .....+.||.+|++++|..++ +.++
T Consensus 106 ~G~aGi~~~ll~~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~~Gi~~~L~~~~~~~~~ 185 (355)
T PF05147_consen 106 SGLAGIGLYLLSLYEKTKDPKYLDIIEKILEKLLESIINDDPSENQIGSEWKEGFINLGFAHGIAGILYALLRLYKKGTK 185 (355)
T ss_dssp TSHHHHHHHHCCHHHHHCCHHS-HHHHHHHHHCCCHHCCCHTCCGSSSHHCHTTBEE-STTTSHHHHHHHHCHCCHHT--
T ss_pred cccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcccccCCCccccCCCCccCCccccHHHHHHHHHHhhhcccC
Confidence 9999998888888887888776666666555541 11 0 112479999999999999998 4665
Q ss_pred CCCCcHHHHHHHHHHHHHHhHHhhhcCCCCCcccccCCc-cCCcccchHHHHHHHHcccCCC---chHHHHHHHHHHHHH
Q 015433 182 KDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKK-YWGAAHGLAGIMHVLMDMELKP---DEVEDVKGTLRYMIK 257 (407)
Q Consensus 182 ~~~~~~~~i~~i~~~ii~~~~~~~~~~~~pl~~~~~~~~-~~G~aHG~aGI~~~L~~~~~~~---~~~~~i~~~l~~~~~ 257 (407)
++.+ .+.++++++.+.+..... ...+|-.....+.. ..+||||.+||+.++..+.... ...+.++++++...+
T Consensus 186 ~~~~-~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~WC~G~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (355)
T PF05147_consen 186 DPEY-LKLIEQILNFLLKHFNTD--DGGWPDNRNNSNYKSRPSWCYGSPGILLALLKAYKILDDEEYDEEAEQALESILQ 262 (355)
T ss_dssp HHHH-HHCHHHHHHHHHHC--TG--CCT--SECTHHHHHC--SSSSSHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred chhH-HHHHHHHHHHHHHhcCcc--cCCCCCCCCccccccccccccCcHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 5433 234555555544433211 11222111111111 5899999999999998875422 224455555555443
Q ss_pred cccCCCCCCCCCCCCCCcccccccCchhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhC--------C---CCCCcccc
Q 015433 258 NRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRG--------L---LKRVGICH 326 (407)
Q Consensus 258 ~~~~~gnwp~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g--------~---~~~~~lCH 326 (407)
... . ...++.|||.+|++..+..+++.++++++.+.+++..+.+.+.. . ..+.+++.
T Consensus 263 ~~~---~---------~~~~~lCHG~aG~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (355)
T PF05147_consen 263 KGL---F---------LNNPSLCHGTAGILEILLDLYKYTGDEEYKELANKLIQKLLSYYDENGYFPGEPRYRISFGLMT 330 (355)
T ss_dssp H-T---C---------TTSS-STTSHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHCTTCCC---HHHTS-STTTTSTTT
T ss_pred ccc---c---------CCCCceeCchHHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCccc
Confidence 211 0 12368999999999999999999999998888888776654321 1 23599999
Q ss_pred cchhHHHHHHHHHH
Q 015433 327 GISGNTYVFLSLYR 340 (407)
Q Consensus 327 G~aG~~~~ll~l~~ 340 (407)
|.+|++++++++..
T Consensus 331 G~~Gi~~~ll~~~~ 344 (355)
T PF05147_consen 331 GIAGILYALLRLLN 344 (355)
T ss_dssp SHHHHHHHHHHHCS
T ss_pred cHHHHHHHHHHhcC
Confidence 99999999987654
No 15
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=99.77 E-value=1.7e-17 Score=168.96 Aligned_cols=245 Identities=20% Similarity=0.317 Sum_probs=178.3
Q ss_pred CCCCCCcccCcHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhcCCCCCCceeeCCchHHHHHHHHHHHHcCChhHHHHH
Q 015433 66 RVQDYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRDSGRVTFICGRAGVCALGAVLAKHAGDERLLDHY 145 (407)
Q Consensus 66 ~~~~~~ly~G~~Gial~l~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~G~~Gi~~~~~~l~~~~~~~~~~~~~ 145 (407)
.|.+.+-|+|.+|+.|++...+..++|......+.+.+..+.........+++.+|.+|++.++..+|+.+..|+..+.+
T Consensus 688 ~~~~iga~~G~~g~~yal~~I~~~~~~~~l~~~~~~~i~~le~~v~~~~~~d~i~Gl~g~i~~L~~iYk~~~epk~l~~a 767 (963)
T COG4403 688 NPINIGAFTGLSGYFYALWKIYSVTRDNYLIQSAENSIRHLEILVQKSKDPDFINGLAGVICVLVSIYKLTDEPKFLELA 767 (963)
T ss_pred CCcccccccccchhhhhhHHHHHhcccHHHHHHHHHHHHHHHHHHhhccCcchhhccHHHHHHHHHHHhhccchHHHHHH
Confidence 44678999999999999999999999877766666666655444344557999999999999999999999888888877
Q ss_pred HHHhhhcc---CC----CCCCcccccchhhHHHHHHHHhhHhCCCCCcHHHHHHHHHHHHHHhHHhhhcCCCCCcccccC
Q 015433 146 LTKFKEIK---LP----SDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHG 218 (407)
Q Consensus 146 ~~~~~~~~---~~----~~~~~d~~~G~AG~l~~ll~l~~~~~~~~~~~~~i~~i~~~ii~~~~~~~~~~~~pl~~~~~~ 218 (407)
+...+.+. .. +.....+.||.||++++|+.+++.++++.+. +.+..++...+..-+.
T Consensus 768 is~~~~l~~~~v~~d~s~~~l~gfshg~sgi~~tL~~ly~~T~e~~l~-----~~i~e~~~~Er~~f~~----------- 831 (963)
T COG4403 768 ISLGRILMEKIVGNDSSETVLLGFSHGASGIILTLLKLYEATGEESLL-----KKIKELLSYERMKFSD----------- 831 (963)
T ss_pred HHHHHHHHHHhhccccccceecccccchHHHHHHHHHHHHhcCcHHHH-----HHHHHHHHHHHHHHHH-----------
Confidence 76554431 11 1123679999999999999999999987553 2223333333221110
Q ss_pred CccCCcccchHHHHHHHHcccCC-Cc--hHHHHHHHHHHHHHcccCCCCCCCCCCCCCCcccccccCchhHHHHHHHHHH
Q 015433 219 KKYWGAAHGLAGIMHVLMDMELK-PD--EVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAE 295 (407)
Q Consensus 219 ~~~~G~aHG~aGI~~~L~~~~~~-~~--~~~~i~~~l~~~~~~~~~~gnwp~~~~~~~~~~~~WChG~~Gi~~~l~~~~~ 295 (407)
...-||||+.||+.+.+.+... .+ ..+.++.++.+.+..-+ | ....|||.-|++-.+..+.+
T Consensus 832 -~~~~Wc~g~~gilv~rl~l~~~~~de~i~~Ei~~~l~~~i~~gl--g------------n~~~Chgdfg~ie~l~~~a~ 896 (963)
T COG4403 832 -KFTRWCSGAPGILVSRLLLKKIYDDESIDREIQQALKTIINNGL--G------------NDSLCHGDFGIIEVLLHYAK 896 (963)
T ss_pred -HHHHHhcCCcceeechhhhhhhcchHHHHHHHHHHHHHHHhccC--C------------CccccccchHHHHHHHHHHH
Confidence 1246899999999988877432 22 23456666766655322 1 25799999999999999999
Q ss_pred HhCcHHHHHHHHHHHHHH--------HHhCCC---CCCcccccchhHHHHHHHHHHH
Q 015433 296 VFGEKEFLQAAVDAGEVV--------WKRGLL---KRVGICHGISGNTYVFLSLYRL 341 (407)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~--------~~~g~~---~~~~lCHG~aG~~~~ll~l~~~ 341 (407)
+++|++.++.+...+..+ |+.++. .+.|+|-|++|++|.|+++...
T Consensus 897 ~l~~~~l~es~~~~~~~~~~k~~~~g~~~~~~~~~~~~glm~GvtGigY~lLR~~~p 953 (963)
T COG4403 897 ILSDSELLESANKLANELVSKAITYGINQGLNHANESFGLMNGVTGIGYSLLRISSP 953 (963)
T ss_pred HhCCHHHHHHHHHHHHHHHHhhccccccccCCCccchhHHHhhhHHHHHHHHHHhCc
Confidence 999999999887655333 233332 2589999999999999987654
No 16
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=99.75 E-value=7e-17 Score=147.13 Aligned_cols=257 Identities=17% Similarity=0.222 Sum_probs=183.5
Q ss_pred CCCceeeCCchHHHHHHHHHHHHcCChhHHHHHHHHhhhccC--CCCCCcccccchhhHHHHHHHHhhHhCCCCCcHHHH
Q 015433 113 SGRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIKL--PSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQM 190 (407)
Q Consensus 113 ~~~~~~~~G~~Gi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~G~AG~l~~ll~l~~~~~~~~~~~~~i 190 (407)
..+.++++|.+|++.++..+|++++|...+..+++.++.... .+.....|+.|+||+...-..+++..+++...+
T Consensus 60 ~~d~tlYtG~~GiAfl~~kly~vTrd~~~L~~~~e~Vk~~~~~~~s~~~vTFLCG~aGv~avgAvia~~l~~~~~~~--- 136 (403)
T KOG2787|consen 60 VRDGTLYTGWLGIAFLYLKLYEVTRDLYDLLLCLEIVKACLVASRSSRRVTFLCGRAGVCAVGAVIAHKLGEEEELD--- 136 (403)
T ss_pred CcCCceeechHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccCceEEECCCcchhHHHHHHHHHhccHHHHH---
Confidence 457899999999999999999999999888877776665421 123446799999999988888888888765433
Q ss_pred HHHHHHHHHHhHHhhhcCCCCCcccccCCccCCcccchHHHHHHHHcccCCC--c--hHHHHHHHHHHHHHc--cc-CCC
Q 015433 191 RAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKP--D--EVEDVKGTLRYMIKN--RF-PSG 263 (407)
Q Consensus 191 ~~i~~~ii~~~~~~~~~~~~pl~~~~~~~~~~G~aHG~aGI~~~L~~~~~~~--~--~~~~i~~~l~~~~~~--~~-~~g 263 (407)
.+..+++.-.. .+..+++ -+-.|-+|.+|+++-+.... + ..+.+++.++-++.. .. ..+
T Consensus 137 -~~l~~f~~l~~-----~~~dlp~--------ElLyGRaGYL~a~lflNk~ig~~ti~~~~i~~i~~~I~~sGr~~a~k~ 202 (403)
T KOG2787|consen 137 -DCLARFLSLRL-----CSSDLPD--------ELLYGRAGYLWACLFLNKYIGQETIPDDDIRSIVQAILTSGRELAKKE 202 (403)
T ss_pred -HHHHHHHhccc-----CCccccH--------HHHhhHHHHHHHHHHHHhhcCCCcCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 33333332211 0112222 35679999999999875321 1 134455555544432 11 234
Q ss_pred C--CCCCCCCCCCcccccccCchhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCC-----------CC--Ccccccc
Q 015433 264 N--YPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLL-----------KR--VGICHGI 328 (407)
Q Consensus 264 n--wp~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----------~~--~~lCHG~ 328 (407)
| -|-..+....+.++-.||.+||.+.++.-..--+++...++++..++...+..+. ++ ..||||.
T Consensus 203 ~~~cPLmYewhg~~Y~GAAhGLagI~~vLm~~~L~~d~~~~~~dVK~sldym~~~rfpsGNyP~s~~~~~drLVhWcHGA 282 (403)
T KOG2787|consen 203 NSPCPLMYEWHGKRYWGAAHGLAGILYVLMDPTLKVDQPALLKDVKGSLDYMIQNRFPSGNYPSSEGNKRDRLVHWCHGA 282 (403)
T ss_pred CCCCCchhhhccceehhhhhhHHHHHHHHhCCCCCCcchhHHHhhhhHHHHHHHccCCCCCCCcccCCCcceeeeeccCC
Confidence 4 2322333556788899999999999988544445677889999999888775431 12 7899999
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcCccccchHHHHHHHHHccC
Q 015433 329 SGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIE 396 (407)
Q Consensus 329 aG~~~~ll~l~~~t~~~~~~~~a~~~~~~~~~~~~~~~~~g~~~~~~~~~sL~~G~aGi~~~Ll~l~~ 396 (407)
.|+++.|..+|+++++++|++.|.+.++.+.++.. -...+|+++|+||.+|+++.+..
T Consensus 283 pGv~~~L~kAy~VF~Eekyl~aa~ecadvVW~rGl----------Lkkg~GichGvaGNaYvFLsLyR 340 (403)
T KOG2787|consen 283 PGVAYTLAKAYQVFKEEKYLEAAMECADVVWKRGL----------LKKGVGICHGVAGNAYVFLSLYR 340 (403)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhh----------hhcCCcccccccCchhhhHhHHH
Confidence 99999999999999999999999998888876532 12359999999999999988754
No 17
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=97.65 E-value=0.0043 Score=58.63 Aligned_cols=237 Identities=15% Similarity=0.125 Sum_probs=124.0
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHHhcC-CCCCCc-eeeCCchHHHHHHHHHHHHcCChhHHHHHHHHhhhcc-CC--CC
Q 015433 83 LFKAYQVTKNDNELKLCCDIVEACDSAS-RDSGRV-TFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIK-LP--SD 157 (407)
Q Consensus 83 l~~l~~~~~~~~~~~~a~~~l~~~~~~~-~~~~~~-~~~~G~~Gi~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~--~~ 157 (407)
.+++++.|+|++|++....+........ ....++ +..+|.. +..+++.++++++++.+.+..+.+. .. ++
T Consensus 45 v~~~~eAT~d~~yl~~l~~~~d~~i~~~g~~~~~id~i~~g~~-----L~~L~e~T~~~~Yl~~a~~~a~~l~~~~Rt~e 119 (357)
T COG4225 45 VARAYEATGDAEYLDYLKTWFDEQIDEGGLPPRNIDHIAAGLT-----LLPLYEQTGDPRYLEAAIKLASWLVHEPRTKE 119 (357)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHhhhccCCCCccchhhhccCce-----eeehhhhhCCHHHHHHHHHHHHHHhhCcccCC
Confidence 4567788999999999888887655432 111111 2223332 3356899999999887776655431 11 11
Q ss_pred C--------Ccc-cccchhhHHHHHHHHhhHhCCCCCcHHHHHHHHHHHHHHhHHhhhcCCCCCccc-ccCC-------c
Q 015433 158 L--------PNE-LLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYE-WHGK-------K 220 (407)
Q Consensus 158 ~--------~~d-~~~G~AG~l~~ll~l~~~~~~~~~~~~~i~~i~~~ii~~~~~~~~~~~~pl~~~-~~~~-------~ 220 (407)
. +.- ++.|.-=-...++.+.+.++++++.++.+.+ ..-..+.+. .....|.|. |... .
T Consensus 120 G~f~H~~~~p~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~~~Q----F~~~~~~l~-Dp~TGL~YH~wd~~~~~~w~~~ 194 (357)
T COG4225 120 GGFQHKVKYPHQMWLDTLYMAGLFLAKYGQVTGRPEYFDEALYQ----FSLHEKYLR-DPETGLYYHGWDEDGTMPWANN 194 (357)
T ss_pred CccccccCchhHhhhcchhhhhHHHHHHHHHhCCHHHHHHHHHH----HHHHHHHcc-CCCcCceEEeeccCCCCccccc
Confidence 1 110 2233322223455667778877655433333 222222221 122234331 2111 1
Q ss_pred cCC----cccchHHHHHHHHcc----cCC-Cc---hHHHHHHHHHHHHHcccCCCCCCCCCCCCCCcccccccCchhHHH
Q 015433 221 YWG----AAHGLAGIMHVLMDM----ELK-PD---EVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTL 288 (407)
Q Consensus 221 ~~G----~aHG~aGI~~~L~~~----~~~-~~---~~~~i~~~l~~~~~~~~~~gnwp~~~~~~~~~~~~WChG~~Gi~~ 288 (407)
..| ||-|++=++.++..+ ... ++ ..+.++..++-+++.|.++|-|-....+....+.-=.-|++||++
T Consensus 195 ~sG~~~fWaRg~gW~~mal~d~le~lp~~~~~r~~l~~~l~d~v~al~r~Qde~GlW~tiLDd~~~~sy~EsSaSa~faY 274 (357)
T COG4225 195 ESGEPAFWARGNGWYAMALADLLELLPEDHPDRRELLNVLRDLVDALIRYQDESGLWHTILDDGRPGSYLESSASAGFAY 274 (357)
T ss_pred cCCCceeeecccchHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHhhccccchhhhhccCCCCCchhhhHHHHHHH
Confidence 122 333333334444332 222 22 133445556666666778999977665432222223468899999
Q ss_pred HHHHHHHH-hCcHHHHHHHHHHHHHHHHh----CC---CCCCcccccch
Q 015433 289 TLAKAAEV-FGEKEFLQAAVDAGEVVWKR----GL---LKRVGICHGIS 329 (407)
Q Consensus 289 ~l~~~~~~-~~~~~~~~~~~~~~~~~~~~----g~---~~~~~lCHG~a 329 (407)
++++..+. .-++++...++++.+.+.+. |- ..-.++|++.+
T Consensus 275 allkgi~~G~l~~~~~~~~~kA~~aLl~~i~~~g~~g~vs~~~~~~~~~ 323 (357)
T COG4225 275 ALLKGINLGILDPEYAPVAEKALDALLGHIDEEGEVGGVSLGTIVGHDL 323 (357)
T ss_pred HHHHHHhcCCCCchhhHHHHHHHHHHHhhcccccccceeecCccccccc
Confidence 99997654 33566667777777666543 22 23367776643
No 18
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=96.87 E-value=0.21 Score=49.23 Aligned_cols=230 Identities=13% Similarity=0.049 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhhhc---c-----------CCCCC-C--ccc-ccchhhHHHHHHHHhhHhCCCCCc
Q 015433 125 VCALGAVLAKHAGDERLLDHYLTKFKEI---K-----------LPSDL-P--NEL-LYGRVGFLWACSFLNKHMGKDTIS 186 (407)
Q Consensus 125 i~~~~~~l~~~~~~~~~~~~~~~~~~~~---~-----------~~~~~-~--~d~-~~G~AG~l~~ll~l~~~~~~~~~~ 186 (407)
.++.++..+..+++++.++.+.+.++-+ . +..+. + ... ++..+=++.++..+++.++++.++
T Consensus 58 ~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at~d~~~l 137 (384)
T cd00249 58 QVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQDGRPVDATKDLYSHAFALLAAAQAAKVGGDPEAR 137 (384)
T ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcCCCCCcccccchHHHHHHHHHHHHHHHhcCCHHHH
Confidence 5566667788888887776554444322 0 11111 1 112 555666778888999999988775
Q ss_pred HHHHHHHHHHHHHHhHHhhhcCCCCCccc--cc-CCccCC-cccchHHHHHHHHcccCC---CchHHHHHHHHHHHHHcc
Q 015433 187 TAQMRAVVDEIIKAGRRLANRGRCPLMYE--WH-GKKYWG-AAHGLAGIMHVLMDMELK---PDEVEDVKGTLRYMIKNR 259 (407)
Q Consensus 187 ~~~i~~i~~~ii~~~~~~~~~~~~pl~~~--~~-~~~~~G-~aHG~aGI~~~L~~~~~~---~~~~~~i~~~l~~~~~~~ 259 (407)
+.++++++.+.+... .... ..+. +. +....+ -.|. =.+.+++.+... ....+.+++.++.+.+..
T Consensus 138 -~~A~~~~~~l~~~~~--~~~g---~~~~~~~~~~~~~~~~~~~~--h~~~all~l~~~tgd~~~~~~A~~l~~~~~~~~ 209 (384)
T cd00249 138 -ALAEETIDLLERRFW--EDHP---GAFDEADPGTPPYRGSNPHM--HLLEAMLAAYEATGEQKYLDRADEIADLILDRF 209 (384)
T ss_pred -HHHHHHHHHHHHHhc--cCCC---cccCCCCCCCCCCCCCChhH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 467777777776542 1100 0010 11 011111 1121 011234444322 234566777776665432
Q ss_pred c--CCCCCCCCCCC------CCCcccccccCchhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCCC-Ccccc-cch
Q 015433 260 F--PSGNYPSSEGS------ESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICH-GIS 329 (407)
Q Consensus 260 ~--~~gnwp~~~~~------~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~lCH-G~a 329 (407)
. ++|.++..... .......|-.+..=.+..++.++.+++++++.+.++++.+.+.+.+.-.. -+++. ...
T Consensus 210 ~~~~~G~~~e~~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~d~~~G~~~~~~~~ 289 (384)
T cd00249 210 IDAESGVVREHFDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARRLFDLALALGWDPERGGLYYSFLD 289 (384)
T ss_pred cCcccCeEEEEECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCcCccCCCEEEeeEC
Confidence 2 24543311100 00011122212222344667778889999999999999988887764221 23444 211
Q ss_pred ----------------hHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 015433 330 ----------------GNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRA 362 (407)
Q Consensus 330 ----------------G~~~~ll~l~~~t~~~~~~~~a~~~~~~~~~~~ 362 (407)
=.+.+++.+++.|+|++|.+.+.++.+++.+..
T Consensus 290 ~~~~~~~~~~~~w~~~E~~~a~~~l~~~tgd~~~~~~~~~~~~~~~~~~ 338 (384)
T cd00249 290 DGGLLEDDDKRWWPQTEALKAALALAGITGDERYWQWYQRAWAYLWRHF 338 (384)
T ss_pred CCCCcccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Confidence 124457788999999999999999988887654
No 19
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=96.86 E-value=0.086 Score=51.22 Aligned_cols=229 Identities=16% Similarity=0.113 Sum_probs=113.6
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHHhcCCCCCCceeeCCchHHHHHHHHHHHHcCChhHHHHHHHHhhhc-c-CCC
Q 015433 79 TAYLLFKAYQVTKNDNELKLCCDIVEACDSASRDSGRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEI-K-LPS 156 (407)
Q Consensus 79 ial~l~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~G~~Gi~~~~~~l~~~~~~~~~~~~~~~~~~~~-~-~~~ 156 (407)
....+.++++.|+|++|++.+.+..+............. .-..|..+ ..+++.++++++.+.+.+.++.+ . ...
T Consensus 30 ~~~gl~~~~~~tgd~~~~~~a~~~~~~~~~~~~~~~~~d--~~~~g~~~--~~~y~~t~d~~y~~~~~~~a~~~l~~~~~ 105 (336)
T PF07470_consen 30 FWYGLLEAYEYTGDERYLDYAERWADRFIEEDGSDYNLD--DHDIGFLL--LDLYERTGDEKYKDAAIQAADWLLARRPR 105 (336)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTTSCC--GTTHHHHH--HHHHHHH-THHHHHHHHHHHHHHHHTSCB
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhccCCccCCc--hhhhHHHH--HHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Confidence 333456788899999999999888776654311110000 11234333 33678899988887766666522 1 110
Q ss_pred ----------CCC-cccccchhhHHHHHHHHhhHhCCCCCcHHHHHHHHHHHHHHhHHhhhcCCCCCcc-ccc--CCc--
Q 015433 157 ----------DLP-NELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMY-EWH--GKK-- 220 (407)
Q Consensus 157 ----------~~~-~d~~~G~AG~l~~ll~l~~~~~~~~~~~~~i~~i~~~ii~~~~~~~~~~~~pl~~-~~~--~~~-- 220 (407)
..+ .-++.+.-=.+..|....+.++++++.+.. ++++....+.... ....+.+ .|. +..
T Consensus 106 ~~~G~~~~~~~~~~~~wiD~~~M~~p~l~~~~~~tgd~~~~~~a----~~q~~~~~~~~~d-~~tGl~~h~~~~~~~~~~ 180 (336)
T PF07470_consen 106 TSDGGFWHNRPYPNQVWIDGMYMNLPFLAWAGKLTGDPKYLDEA----VRQFRLTRKYLYD-PETGLYYHGYTYQGYADW 180 (336)
T ss_dssp ECTGCBECTTTSTTEEETTHHHHHHHHHHHHHHHHTGHHHHHHH----HHHHHHHHHHHB--TTTSSBESEEETTSSSTT
T ss_pred CCCCccccCCCCCCceeeccccccHHHHHHHHHHHCCcHHHHHH----HHHHHHHHHhccC-CCCCceeeccCCCCCcCc
Confidence 011 114445544556677778888887655433 3333333322221 1112221 111 111
Q ss_pred -cCCcccchH----HHHHHHHcccCCC----chHHHHHHHHHHHHHcccCCCCCCCCCCCCCCcccccccCchhHHHHHH
Q 015433 221 -YWGAAHGLA----GIMHVLMDMELKP----DEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLA 291 (407)
Q Consensus 221 -~~G~aHG~a----GI~~~L~~~~~~~----~~~~~i~~~l~~~~~~~~~~gnwp~~~~~~~~~~~~WChG~~Gi~~~l~ 291 (407)
...|+-|.+ |++-++-.+.... ...+.+++.++.+.+.|.++|-|+....+......-=--|++.++.+++
T Consensus 181 s~~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~~~G~w~~~~~~~~~~~~~etSatA~~a~~l~ 260 (336)
T PF07470_consen 181 SDSFWSRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARYQDEDGLWYQDLDDPDPGNYRETSATAMFAYGLL 260 (336)
T ss_dssp ST--BHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTTSBEBSBTTTTTTTS-BEHHHHHHHHHHHH
T ss_pred ccccCcchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhcCCCCCCcceecCCCCCCCcccHHHHHHHHHHHH
Confidence 112443433 3333333332221 1234455566666555557887865543322111112245666666776
Q ss_pred HHHH--HhCcHHHHHHHHHHHHHHHHh
Q 015433 292 KAAE--VFGEKEFLQAAVDAGEVVWKR 316 (407)
Q Consensus 292 ~~~~--~~~~~~~~~~~~~~~~~~~~~ 316 (407)
+... ..+++++.+.++++.+.+.++
T Consensus 261 ~gi~~g~~d~~~y~~~a~~a~~~l~~~ 287 (336)
T PF07470_consen 261 RGIRLGLLDPEEYRPAAEKALEALLSN 287 (336)
T ss_dssp HHHHTTSSTHHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCCccHHHHHHHHHHHHHHHhC
Confidence 6332 244788999999999988877
No 20
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.53 Score=49.02 Aligned_cols=254 Identities=18% Similarity=0.215 Sum_probs=137.3
Q ss_pred cccCcHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhcCCCCCCceeeC-------CchHH--HHHHHHHHHHcCChhHH
Q 015433 72 LYTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRDSGRVTFIC-------GRAGV--CALGAVLAKHAGDERLL 142 (407)
Q Consensus 72 ly~G~~Gial~l~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~-------G~~Gi--~~~~~~l~~~~~~~~~~ 142 (407)
||+ .+.++.+|.+.|+.++|+.|.+.+.++++-+.+... ....+|++ |.-|- .|....+.+.+|+ ..
T Consensus 272 LyD-nA~l~~~y~~ay~~tgd~~y~~~a~~i~~~l~rel~-sp~ggFyss~DAD~~g~EG~~Y~Ws~eEi~~~Lg~--d~ 347 (667)
T COG1331 272 LYD-NALLLRAYAEAYRATGDDLYRRAAEGILDYLLRELY-SPEGGFYSSLDADSDGEEGKYYTWSVEELKEVLGE--DA 347 (667)
T ss_pred HHH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc-CCCCceeecccccCcccCCCeeecCHHHHHHHhcc--cH
Confidence 444 478999999999999999999999998887765421 11223433 33342 3444445555662 22
Q ss_pred HHHHHHhhhccCCCCCCcccccchhhHHHHHHHHhhHhCC-CCCcHHHHHHHHHHHHHHhHHhhhcCCCCCcccccCCcc
Q 015433 143 DHYLTKFKEIKLPSDLPNELLYGRVGFLWACSFLNKHMGK-DTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKY 221 (407)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~d~~~G~AG~l~~ll~l~~~~~~-~~~~~~~i~~i~~~ii~~~~~~~~~~~~pl~~~~~~~~~ 221 (407)
+.+.+.++ ++...+++ |+. ++.+...... ..-..+.++.+-++++.... +...|.. .++.+
T Consensus 348 ~~~~~~f~---vs~~Gnfe---Grn-----vL~~~~~~~~~~~~~~~~l~~~r~kL~~~R~----~R~~P~~---Ddkvl 409 (667)
T COG1331 348 ELACKYFD---VSEEGNFE---GRN-----VLHVPGPLEEAIEEAEEKLERAREKLLAARE----KRKQPSR---DDKVL 409 (667)
T ss_pred HHHHHHcc---cCCCCCcC---Cce-----eecccCchhhhhhhhHHHHHHHHHHHHHHHH----hCCCCCC---Cccee
Confidence 33333332 22222222 110 0000000000 00001233333344443221 1122311 12333
Q ss_pred CCcccchHHHHHHHHcccCC---CchHHHHHHHHHHHHHcccCCCCCCCCCCCCCCcccccccCch----------hHHH
Q 015433 222 WGAAHGLAGIMHVLMDMELK---PDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAP----------GVTL 288 (407)
Q Consensus 222 ~G~aHG~aGI~~~L~~~~~~---~~~~~~i~~~l~~~~~~~~~~gnwp~~~~~~~~~~~~WChG~~----------Gi~~ 288 (407)
++| .|+ .+.+|+..+.. ++..+.++++.+++.++...+ +....|=+|.+ =.+.
T Consensus 410 t~w-Ngl--mi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~-----------rl~~~~~~G~a~~~g~leDYA~~i~ 475 (667)
T COG1331 410 TDW-NGL--MIAALAEAGRVLGDPEYLEAAERAADFILDNLYVD-----------RLLRRYRGGEAAVAGLLEDYAFLIL 475 (667)
T ss_pred ecc-HHH--HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhccc-----------chheeeecCcccccccchhHHHHHH
Confidence 332 121 44566666543 345788899999887754421 11233444444 2345
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHHHH----HHh--CC-----------CCCCccc-----ccchhHHHHHHHHHHHhCCHH
Q 015433 289 TLAKAAEVFGEKEFLQAAVDAGEVV----WKR--GL-----------LKRVGIC-----HGISGNTYVFLSLYRLTGNVE 346 (407)
Q Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~~~----~~~--g~-----------~~~~~lC-----HG~aG~~~~ll~l~~~t~~~~ 346 (407)
+++.++.++.|.+|++.|.+..+.+ |.. |+ .+....- -|.+=.+..|+++.++|++.+
T Consensus 476 gll~lye~t~d~~yL~~A~~L~~~~i~~f~d~~gGf~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~~~ 555 (667)
T COG1331 476 GLLALYEATGDLAYLEKAIELADEAIADFWDDEGGFYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLSLLTGDAR 555 (667)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHHHHhcCCCCCcccCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCchh
Confidence 7888899999999999988877655 332 21 2223333 355778889999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 015433 347 YLYRAKAFACFLYDR 361 (407)
Q Consensus 347 ~~~~a~~~~~~~~~~ 361 (407)
|.+.|.+..+.....
T Consensus 556 y~e~A~~~L~a~~~~ 570 (667)
T COG1331 556 YLEAAEDILQAFAGL 570 (667)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988876554443
No 21
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=96.46 E-value=0.047 Score=56.38 Aligned_cols=131 Identities=21% Similarity=0.267 Sum_probs=87.3
Q ss_pred cccchHHHHHHHHcccCCCchHHHHHHHHHHHHHcccCCCC---CCCCCC-CCCCc-cc----ccccCchhHHHHHHHHH
Q 015433 224 AAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGN---YPSSEG-SESDR-LV----HWCHGAPGVTLTLAKAA 294 (407)
Q Consensus 224 ~aHG~aGI~~~L~~~~~~~~~~~~i~~~l~~~~~~~~~~gn---wp~~~~-~~~~~-~~----~WChG~~Gi~~~l~~~~ 294 (407)
+.|=++|.++++.... .++..+.+...|+.+.+.|.++|. ++.... ...+. .. -||.| -++.+++..+
T Consensus 62 ~g~wl~a~a~~~~~~~-D~~l~~~~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~~~he~Y~~~--~ll~gl~~~y 138 (520)
T PF07944_consen 62 VGKWLEAAAYAYAYTG-DPELKAKADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAPDMHELYCLG--KLLEGLIDYY 138 (520)
T ss_pred HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhccCCceecccccccccccccCCCCCccceehHh--HHHHHHHHHH
Confidence 3455677777666543 122356788888888888877773 333320 11111 11 34422 2455788889
Q ss_pred HHhCcHHHHHHHHHHHHHHHHh--CCCC---CCcccccchhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 015433 295 EVFGEKEFLQAAVDAGEVVWKR--GLLK---RVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACF 357 (407)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~--g~~~---~~~lCHG~aG~~~~ll~l~~~t~~~~~~~~a~~~~~~ 357 (407)
..+++++.++.+.+.++.+.+. .+.. ...+..|..|+.+.+.++|+.|+|++|++.|++|.+.
T Consensus 139 ~~tG~~~~L~v~~k~ad~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~ 206 (520)
T PF07944_consen 139 EATGNERALDVATKLADWVYRRLSRLGPEPGQKMGYPEHGGINEALVRLYEITGDERYLDLAEYFVDQ 206 (520)
T ss_pred HHHCcHHHHHHHHHHHHHHHHHhccCCHHHhhcccccccchHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999988322 1211 1344558888999999999999999999998877543
No 22
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=96.04 E-value=1.7 Score=42.76 Aligned_cols=238 Identities=16% Similarity=0.130 Sum_probs=129.7
Q ss_pred cHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhcCCC---CCCceee--CC-----------chHHHHHHHHHHHHcCCh
Q 015433 76 ALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRD---SGRVTFI--CG-----------RAGVCALGAVLAKHAGDE 139 (407)
Q Consensus 76 ~~Gial~l~~l~~~~~~~~~~~~a~~~l~~~~~~~~~---~~~~~~~--~G-----------~~Gi~~~~~~l~~~~~~~ 139 (407)
.+=.+++|+.++++++++.+++.|...++-+.+.... ..-...+ .| .+=++..++.+++.++++
T Consensus 55 ~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at~d~ 134 (384)
T cd00249 55 QARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQDGRPVDATKDLYSHAFALLAAAQAAKVGGDP 134 (384)
T ss_pred ecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcCCCCCcccccchHHHHHHHHHHHHHHHhcCCH
Confidence 4556788889999999999999998877766543211 0000011 11 111334445678899999
Q ss_pred hHHHHHHHHhhhc---cCCCCC-------C-cccccchhhH---HHHHHHHhhHhCCCCCcHHHHHHHHHHHHHHhHHhh
Q 015433 140 RLLDHYLTKFKEI---KLPSDL-------P-NELLYGRVGF---LWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLA 205 (407)
Q Consensus 140 ~~~~~~~~~~~~~---~~~~~~-------~-~d~~~G~AG~---l~~ll~l~~~~~~~~~~~~~i~~i~~~ii~~~~~~~ 205 (407)
++++.+.+.++.+ ....+. . ..-..+..++ +.+++.+++.++++.+. +.++++++.+.+......
T Consensus 135 ~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~~all~l~~~tgd~~~~-~~A~~l~~~~~~~~~~~~ 213 (384)
T cd00249 135 EARALAEETIDLLERRFWEDHPGAFDEADPGTPPYRGSNPHMHLLEAMLAAYEATGEQKYL-DRADEIADLILDRFIDAE 213 (384)
T ss_pred HHHHHHHHHHHHHHHHhccCCCcccCCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHHHHhcCcc
Confidence 8887766655433 111110 0 1112233333 35677888888887664 356666666665542111
Q ss_pred hcCCCCCcc--ccc----C-CccCCcccchHHHHHHHHcccC-CC--chHHHHHHHHHHHHHccc--CCCCCCC-CCCC-
Q 015433 206 NRGRCPLMY--EWH----G-KKYWGAAHGLAGIMHVLMDMEL-KP--DEVEDVKGTLRYMIKNRF--PSGNYPS-SEGS- 271 (407)
Q Consensus 206 ~~~~~pl~~--~~~----~-~~~~G~aHG~aGI~~~L~~~~~-~~--~~~~~i~~~l~~~~~~~~--~~gnwp~-~~~~- 271 (407)
. ...+..+ .|. . ....--+|..- .++.|+++.. .+ ...+.+++.+++..+... +.|.|.. ....
T Consensus 214 ~-G~~~e~~~~~~~~~~~~~~~~~~Pgh~~e-~a~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~d~~~G~~~~~~~~~~ 291 (384)
T cd00249 214 S-GVVREHFDEDWNPYNGDKGRHQEPGHQFE-WAWLLLRIASRSGQAWLIEKARRLFDLALALGWDPERGGLYYSFLDDG 291 (384)
T ss_pred c-CeEEEEECCCCCCCcCcCCCcCCCchHHH-HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCcCccCCCEEEeeECCC
Confidence 1 0000000 010 0 01111334432 4556666543 23 246777888887766443 2354444 2111
Q ss_pred ---CCCcccccccCchhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCC
Q 015433 272 ---ESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGL 318 (407)
Q Consensus 272 ---~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 318 (407)
..+....|++.- .+.+++.+++.++|+++.+.++++.+.+++..+
T Consensus 292 ~~~~~~~~~~w~~~E--~~~a~~~l~~~tgd~~~~~~~~~~~~~~~~~~~ 339 (384)
T cd00249 292 GLLEDDDKRWWPQTE--ALKAALALAGITGDERYWQWYQRAWAYLWRHFI 339 (384)
T ss_pred CCcccccccccHHHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Confidence 123345677433 344556678889999999999999998887654
No 23
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=95.07 E-value=1.5 Score=45.47 Aligned_cols=217 Identities=18% Similarity=0.125 Sum_probs=118.3
Q ss_pred chH-HHHHHHHHHHHcCChhHHHHHHHHhhhcc--CCCC---------C---Cccc-------ccchhhHHHHHHHHhhH
Q 015433 122 RAG-VCALGAVLAKHAGDERLLDHYLTKFKEIK--LPSD---------L---PNEL-------LYGRVGFLWACSFLNKH 179 (407)
Q Consensus 122 ~~G-i~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~---------~---~~d~-------~~G~AG~l~~ll~l~~~ 179 (407)
..| .+-.++..+..++|++..+++-+.++.+. ...+ . ..+. ++...-++-+++..++.
T Consensus 61 ~~g~wl~a~a~~~~~~~D~~l~~~~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~~~he~Y~~~~ll~gl~~~y~~ 140 (520)
T PF07944_consen 61 DVGKWLEAAAYAYAYTGDPELKAKADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAPDMHELYCLGKLLEGLIDYYEA 140 (520)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccCCceecccccccccccccCCCCCccceehHhHHHHHHHHHHHH
Confidence 445 23333445667888877666555554431 0010 0 1111 34445577788999999
Q ss_pred hCCCCCcHHHHHHHHHHHHHHhHHhhhcCCCCCcccccCCccCCcccchHHHHHHHHcccCCCchHHHHHHHHHHHHHcc
Q 015433 180 MGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNR 259 (407)
Q Consensus 180 ~~~~~~~~~~i~~i~~~ii~~~~~~~~~~~~pl~~~~~~~~~~G~aHG~aGI~~~L~~~~~~~~~~~~i~~~l~~~~~~~ 259 (407)
+++++.++ .+.+.++.+.+....+. +.|. ...+-. |-.||..+|.+++..+.+.+.++-+- +..+.+
T Consensus 141 tG~~~~L~-v~~k~ad~~~~~~~~~~---~~~~------~~~~~~--~~~~i~~~l~~LY~~Tgd~~yL~lA~-~f~~~~ 207 (520)
T PF07944_consen 141 TGNERALD-VATKLADWVYRRLSRLG---PEPG------QKMGYP--EHGGINEALVRLYEITGDERYLDLAE-YFVDQR 207 (520)
T ss_pred HCcHHHHH-HHHHHHHHHHHHhccCC---HHHh------hccccc--ccchHHHHHHHHHHHhCCHHHHHHHH-HHHHHh
Confidence 99987653 66677776633222111 1110 011112 34588899999986554332222222 222222
Q ss_pred cCCCCCCCCCC------CCCCcccccccCc--hhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh-C-------------
Q 015433 260 FPSGNYPSSEG------SESDRLVHWCHGA--PGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKR-G------------- 317 (407)
Q Consensus 260 ~~~gnwp~~~~------~~~~~~~~WChG~--~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-g------------- 317 (407)
+..|.... ...+...+..|.. .=..-..+.++..++|+++++.+++..+.+.++ .
T Consensus 208 ---~~~~~~~~~~~d~~~~~~a~~~~~h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~~~~~y~tGg~g~~~~~E 284 (520)
T PF07944_consen 208 ---GFDPYDLAYGQDHLPGRHANTHIGHAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVVRHHMYATGGIGSDHEGE 284 (520)
T ss_pred ---CCCCCchhhcCccCCCccccceeeEEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHhcCeeccCCCcCCCCCc
Confidence 22220000 0111223444543 111224577888899999999999988777543 1
Q ss_pred -CC-----CC---CcccccchhHHHHHHHHHHHhCCHHHHHHHHHH
Q 015433 318 -LL-----KR---VGICHGISGNTYVFLSLYRLTGNVEYLYRAKAF 354 (407)
Q Consensus 318 -~~-----~~---~~lCHG~aG~~~~ll~l~~~t~~~~~~~~a~~~ 354 (407)
+. .+ .+=.|.+.+......++++.|+|++|.+..++.
T Consensus 285 ~f~~~~~lp~~~~~~EtCas~~~~~~~~~L~~~tgd~~yaD~~Er~ 330 (520)
T PF07944_consen 285 HFGPPYDLPNRLAYAETCASVNMMKLARRLFRLTGDARYADYYERA 330 (520)
T ss_pred cCCCCCCCCcCCCCccccHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 10 00 133567888888889999999999998876654
No 24
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.23 Score=51.66 Aligned_cols=257 Identities=21% Similarity=0.266 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhhhcc--------------CCCCC----C-c-ccccchhhHHHHHHHHhhHhCCCC
Q 015433 125 VCALGAVLAKHAGDERLLDHYLTKFKEIK--------------LPSDL----P-N-ELLYGRVGFLWACSFLNKHMGKDT 184 (407)
Q Consensus 125 i~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------------~~~~~----~-~-d~~~G~AG~l~~ll~l~~~~~~~~ 184 (407)
.+.++...+...||+...+.+...++.+. ...|. | + -+++=.|.++.++...++.++++.
T Consensus 214 ~l~~Llr~~~~~~d~~~~~~~~~TL~~ma~GGIyDhlgGGF~RYStD~~WlvPHFEKMLyDnA~l~~~y~~ay~~tgd~~ 293 (667)
T COG1331 214 LLLFLLRYSLRTGDERALDMVLRTLDAMARGGIYDHLGGGFFRYSTDREWLVPHFEKMLYDNALLLRAYAEAYRATGDDL 293 (667)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHccCCccccCCceeeeecCCceechhHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 34444444455788776666666665431 11111 1 2 278889999999999999999987
Q ss_pred CcHHHHHHHHHHHHHHhHHhhh------c----CCCCCcccccCC---ccCCcccchHHHHHHHHcccCC----------
Q 015433 185 ISTAQMRAVVDEIIKAGRRLAN------R----GRCPLMYEWHGK---KYWGAAHGLAGIMHVLMDMELK---------- 241 (407)
Q Consensus 185 ~~~~~i~~i~~~ii~~~~~~~~------~----~~~pl~~~~~~~---~~~G~aHG~aGI~~~L~~~~~~---------- 241 (407)
+. ..++++++.+++....-.. . ......|.|... ..+| =.+.++.-...+...
T Consensus 294 y~-~~a~~i~~~l~rel~sp~ggFyss~DAD~~g~EG~~Y~Ws~eEi~~~Lg---~d~~~~~~~f~vs~~GnfeGrnvL~ 369 (667)
T COG1331 294 YR-RAAEGILDYLLRELYSPEGGFYSSLDADSDGEEGKYYTWSVEELKEVLG---EDAELACKYFDVSEEGNFEGRNVLH 369 (667)
T ss_pred HH-HHHHHHHHHHHHHhcCCCCceeecccccCcccCCCeeecCHHHHHHHhc---ccHHHHHHHcccCCCCCcCCceeec
Confidence 64 4777888887775433110 0 011122344311 1122 011111111111000
Q ss_pred ----Cc-----hHHHHHHHHHHHHHcccCCCCCCCCCCCCCCcccccccCchhHHHHHHHHHHHhCcHHHHHHHHHHHHH
Q 015433 242 ----PD-----EVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEV 312 (407)
Q Consensus 242 ----~~-----~~~~i~~~l~~~~~~~~~~gnwp~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~ 312 (407)
.+ ..+.++.+-+.++..+- ..--|... ...+..|- | =++.+++.++.+++++++.+.|+++.+.
T Consensus 370 ~~~~~~~~~~~~~~~l~~~r~kL~~~R~-~R~~P~~D---dkvlt~wN-g--lmi~aLa~a~~~~~d~~~l~~A~~~~~f 442 (667)
T COG1331 370 VPGPLEEAIEEAEEKLERAREKLLAARE-KRKQPSRD---DKVLTDWN-G--LMIAALAEAGRVLGDPEYLEAAERAADF 442 (667)
T ss_pred ccCchhhhhhhhHHHHHHHHHHHHHHHH-hCCCCCCC---cceeeccH-H--HHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 00 01122222222322111 11122211 12356663 2 2345799999999999999999999998
Q ss_pred HHHhCCCCCCcccccc----h----------hHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhcCCCCC-----
Q 015433 313 VWKRGLLKRVGICHGI----S----------GNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHG----- 373 (407)
Q Consensus 313 ~~~~g~~~~~~lCHG~----a----------G~~~~ll~l~~~t~~~~~~~~a~~~~~~~~~~~~~~~~~g~~~~----- 373 (407)
+.+.... + -|||+. + =.+..++.+|+.|++.+|++.|.++++.++....... .|.+..
T Consensus 443 i~~~l~~-~-rl~~~~~~G~a~~~g~leDYA~~i~gll~lye~t~d~~yL~~A~~L~~~~i~~f~d~~-gGf~~t~~~~~ 519 (667)
T COG1331 443 ILDNLYV-D-RLLRRYRGGEAAVAGLLEDYAFLILGLLALYEATGDLAYLEKAIELADEAIADFWDDE-GGFYDTPSDSE 519 (667)
T ss_pred HHHhhcc-c-chheeeecCcccccccchhHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhcCCC-CCcccCCCccc
Confidence 8765322 2 344432 2 2456788999999999999999999988877643211 121111
Q ss_pred --CCCcCccccch-----HHHHHHHHHcc
Q 015433 374 --GDRPYSLFEGI-----GGMTHLFLDMI 395 (407)
Q Consensus 374 --~~~~~sL~~G~-----aGi~~~Ll~l~ 395 (407)
..++...+.|. |=++..|+++.
T Consensus 520 ~l~ir~~~~~D~a~~S~na~~~~~L~~Ls 548 (667)
T COG1331 520 DLLIRPKEPTDGATPSGNAVAAQALLRLS 548 (667)
T ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 12344555554 66777777664
No 25
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=94.76 E-value=1.9 Score=41.27 Aligned_cols=181 Identities=15% Similarity=0.163 Sum_probs=93.6
Q ss_pred cHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhcCCCCCC----------ceeeCCchHHHHHHHHHHHHcCChhHHHHH
Q 015433 76 ALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRDSGR----------VTFICGRAGVCALGAVLAKHAGDERLLDHY 145 (407)
Q Consensus 76 ~~Gial~l~~l~~~~~~~~~~~~a~~~l~~~~~~~~~~~~----------~~~~~G~~Gi~~~~~~l~~~~~~~~~~~~~ 145 (407)
.+|.+| +-+++.|++++|++.+.++.+.+....+.... .=...|+-=-..+++.+.+.++++++++.+
T Consensus 83 ~~g~~L--~~L~e~T~~~~Yl~~a~~~a~~l~~~~Rt~eG~f~H~~~~p~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~ 160 (357)
T COG4225 83 AAGLTL--LPLYEQTGDPRYLEAAIKLASWLVHEPRTKEGGFQHKVKYPHQMWLDTLYMAGLFLAKYGQVTGRPEYFDEA 160 (357)
T ss_pred ccCcee--eehhhhhCCHHHHHHHHHHHHHHhhCcccCCCccccccCchhHhhhcchhhhhHHHHHHHHHhCCHHHHHHH
Confidence 344444 45678999999999998888777654421110 112233322223456678999999999988
Q ss_pred HHHhhhc-c-C------------CCCC--C-----cc--cccchhhHHHHHHHHh---hHhCCCCCcHHHHHHHHHHHHH
Q 015433 146 LTKFKEI-K-L------------PSDL--P-----NE--LLYGRVGFLWACSFLN---KHMGKDTISTAQMRAVVDEIIK 199 (407)
Q Consensus 146 ~~~~~~~-~-~------------~~~~--~-----~d--~~~G~AG~l~~ll~l~---~~~~~~~~~~~~i~~i~~~ii~ 199 (407)
+.++... . + +.+. + .+ .+-| -|+.|+.+.+. +.++...-....+.++...+++
T Consensus 161 ~~QF~~~~~~l~Dp~TGL~YH~wd~~~~~~w~~~~sG~~~fWa-Rg~gW~~mal~d~le~lp~~~~~r~~l~~~l~d~v~ 239 (357)
T COG4225 161 LYQFSLHEKYLRDPETGLYYHGWDEDGTMPWANNESGEPAFWA-RGNGWYAMALADLLELLPEDHPDRRELLNVLRDLVD 239 (357)
T ss_pred HHHHHHHHHHccCCCcCceEEeeccCCCCccccccCCCceeee-cccchHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Confidence 7776321 0 0 1111 0 11 1222 23444444443 3344332122233344444443
Q ss_pred HhHHhhhcCCCCCccccc-C--CccCCcccchHHHHHHHHc---ccCC-CchHHHHHHHHHHHHHcccC
Q 015433 200 AGRRLANRGRCPLMYEWH-G--KKYWGAAHGLAGIMHVLMD---MELK-PDEVEDVKGTLRYMIKNRFP 261 (407)
Q Consensus 200 ~~~~~~~~~~~pl~~~~~-~--~~~~G~aHG~aGI~~~L~~---~~~~-~~~~~~i~~~l~~~~~~~~~ 261 (407)
+...+-+ ...++++-- + ..+.==+-|.|||+++|++ .+.. ++....++++++-++....+
T Consensus 240 al~r~Qd--e~GlW~tiLDd~~~~sy~EsSaSa~faYallkgi~~G~l~~~~~~~~~kA~~aLl~~i~~ 306 (357)
T COG4225 240 ALIRYQD--ESGLWHTILDDGRPGSYLESSASAGFAYALLKGINLGILDPEYAPVAEKALDALLGHIDE 306 (357)
T ss_pred HHHHhhc--cccchhhhhccCCCCCchhhhHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccc
Confidence 3322211 122222110 1 1222346789999999999 4433 34456788888877765443
No 26
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.71 E-value=0.4 Score=47.92 Aligned_cols=134 Identities=18% Similarity=0.211 Sum_probs=88.8
Q ss_pred CCcccchHHHHHHHHcccCCCchHHHHHHHHHHHHHcccCCCC---CCCCC-CCCCCcccccccCc--hhHHH-HHHHHH
Q 015433 222 WGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGN---YPSSE-GSESDRLVHWCHGA--PGVTL-TLAKAA 294 (407)
Q Consensus 222 ~G~aHG~aGI~~~L~~~~~~~~~~~~i~~~l~~~~~~~~~~gn---wp~~~-~~~~~~~~~WChG~--~Gi~~-~l~~~~ 294 (407)
..+.|=++-++++|..-.. +...+.+..+|+-+.+.|.++|. |-... ++..-....|||=. +|-++ +....+
T Consensus 66 sdlgkwlea~A~~l~~~~d-p~Lekr~D~vi~~~a~~QdedGYl~~~~q~~~pe~Rw~nlr~~HelY~aghLieg~va~~ 144 (589)
T COG3533 66 SDLGKWLEAAAYSLANKGD-PELEKRIDEVVEELARAQDEDGYLGGWFQADFPEERWGNLRPNHELYCAGHLIEGGVAAH 144 (589)
T ss_pred ccHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhhccCCcccceeeccCchhhhhccccchHHHHhHHHHhhhhHHH
Confidence 3577778888888876431 12244566667666566666662 43222 12223457899873 34333 355556
Q ss_pred HHhCcHHHHHHHHHHHHHHHHh-CCC--CCCcccccchhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 015433 295 EVFGEKEFLQAAVDAGEVVWKR-GLL--KRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACF 357 (407)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~-g~~--~~~~lCHG~aG~~~~ll~l~~~t~~~~~~~~a~~~~~~ 357 (407)
+.++...+++.+.+.++.+.+- |-. +..+.| |--|+-.++..+|++|++++|++.|+.|..+
T Consensus 145 qaTGkr~lldV~~rlADhi~tvfgp~~~q~~g~~-gH~eielAl~~Ly~~Tg~~rYL~LA~~Fi~~ 209 (589)
T COG3533 145 QATGKRRLLDVVCRLADHIATVFGPEEDQVPGYC-GHPEIELALAELYRLTGDQRYLDLARRFIHQ 209 (589)
T ss_pred HhhCcchHHHHHHHHHHhhhhhcCcccccccccc-CCCchhHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 7788889999888888777542 222 235555 8889999999999999999999999887544
No 27
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=94.67 E-value=0.53 Score=44.35 Aligned_cols=132 Identities=12% Similarity=0.140 Sum_probs=80.5
Q ss_pred hHHHHHHHHcccCC-C--chHHHHHHHHHHHHHcccCCCCCCCCCCCCCCc--ccccccC-chhHHHHHHHHHHHhC---
Q 015433 228 LAGIMHVLMDMELK-P--DEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDR--LVHWCHG-APGVTLTLAKAAEVFG--- 298 (407)
Q Consensus 228 ~aGI~~~L~~~~~~-~--~~~~~i~~~l~~~~~~~~~~gnwp~~~~~~~~~--~~~WChG-~~Gi~~~l~~~~~~~~--- 298 (407)
..--+-+|++++.. + .+.+.+.++++|+++.|+++|.||.......+. .+.+|-. ...++.+|..++....
T Consensus 46 T~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~~~ 125 (290)
T TIGR02474 46 TVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDPFD 125 (290)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCCcc
Confidence 34556677776542 2 357889999999999999999999654332211 1233333 3455556655554211
Q ss_pred ------cHHHHHHHHHHHHHHHHhCC-----------------C--------CCCcccccc-hhHHHHHHHHHHHhCCHH
Q 015433 299 ------EKEFLQAAVDAGEVVWKRGL-----------------L--------KRVGICHGI-SGNTYVFLSLYRLTGNVE 346 (407)
Q Consensus 299 ------~~~~~~~~~~~~~~~~~~g~-----------------~--------~~~~lCHG~-aG~~~~ll~l~~~t~~~~ 346 (407)
.++....+.++++.+.+... + .-++||-+- +|+..+|+.+.+ .+++
T Consensus 126 ~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~--ps~~ 203 (290)
T TIGR02474 126 VFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQPN--PSAE 203 (290)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCCC--CCHH
Confidence 15678888888888755321 0 126677554 566666655553 4567
Q ss_pred HHHHHHHHHHHHHHH
Q 015433 347 YLYRAKAFACFLYDR 361 (407)
Q Consensus 347 ~~~~a~~~~~~~~~~ 361 (407)
++.......+|+-+.
T Consensus 204 i~~ai~~A~~W~~~~ 218 (290)
T TIGR02474 204 IKEAIRAGVAWFDTS 218 (290)
T ss_pred HHHHHHHHHHHHHHC
Confidence 777777766777554
No 28
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=93.96 E-value=2.7 Score=40.72 Aligned_cols=201 Identities=16% Similarity=0.114 Sum_probs=104.4
Q ss_pred HHHHHHHHhhHhCCCCCcHHHHHHHHHHHHHHhHHhhhcCCCCCcccccCCccCCcccchHHHHHHH-HcccCCCchHHH
Q 015433 169 FLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVL-MDMELKPDEVED 247 (407)
Q Consensus 169 ~l~~ll~l~~~~~~~~~~~~~i~~i~~~ii~~~~~~~~~~~~pl~~~~~~~~~~G~aHG~aGI~~~L-~~~~~~~~~~~~ 247 (407)
+..+++.+++.++++++. +.+++.++..+...... .+ --.| ..|.+++. .+....++..+.
T Consensus 30 ~~~gl~~~~~~tgd~~~~-~~a~~~~~~~~~~~~~~-----~~-----------~d~~-~~g~~~~~~y~~t~d~~y~~~ 91 (336)
T PF07470_consen 30 FWYGLLEAYEYTGDERYL-DYAERWADRFIEEDGSD-----YN-----------LDDH-DIGFLLLDLYERTGDEKYKDA 91 (336)
T ss_dssp HHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHTT-----TS-----------CCGT-THHHHHHHHHHHH-THHHHHH
T ss_pred HHHHHHHHHHHHCCHHHH-HHHHHHHHHHHhccCCc-----cC-----------Cchh-hhHHHHHHHHHHhCCHHHHHH
Confidence 555677888899987764 35555666555543210 00 0112 22333322 222223335677
Q ss_pred HHHHHHHHHHccc--CCCCCCCCCCCCCCcccccccCchhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh------CCC
Q 015433 248 VKGTLRYMIKNRF--PSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKR------GLL 319 (407)
Q Consensus 248 i~~~l~~~~~~~~--~~gnwp~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------g~~ 319 (407)
+.+..++++.... ++|.+... .......|+-+.--....++.+++.++|+++.+.|.+-.+...+. |+.
T Consensus 92 ~~~~a~~~l~~~~~~~~G~~~~~---~~~~~~~wiD~~~M~~p~l~~~~~~tgd~~~~~~a~~q~~~~~~~~~d~~tGl~ 168 (336)
T PF07470_consen 92 AIQAADWLLARRPRTSDGGFWHN---RPYPNQVWIDGMYMNLPFLAWAGKLTGDPKYLDEAVRQFRLTRKYLYDPETGLY 168 (336)
T ss_dssp HHHHHHHHHHTSCBECTGCBECT---TTSTTEEETTHHHHHHHHHHHHHHHHTGHHHHHHHHHHHHHHHHHHB-TTTSSB
T ss_pred HHHHHHHHHHhCCCCCCCccccC---CCCCCceeeccccccHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhccCCCCCce
Confidence 8888887777554 35554321 112335677776667788899999999999999888776666543 331
Q ss_pred -C--------C---CcccccchhHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHHhhhhhcCC----CCCCC-Cc
Q 015433 320 -K--------R---VGICHGISGNTYVFLSLYRLTGN-----VEYLYRAKAFACFLYDRAQKLIAEGK----MHGGD-RP 377 (407)
Q Consensus 320 -~--------~---~~lCHG~aG~~~~ll~l~~~t~~-----~~~~~~a~~~~~~~~~~~~~~~~~g~----~~~~~-~~ 377 (407)
. + .++--|.+=.++.+..+++.+.+ +.+++.+.++++.+..... ..|. +..++ .+
T Consensus 169 ~h~~~~~~~~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~---~~G~w~~~~~~~~~~~ 245 (336)
T PF07470_consen 169 YHGYTYQGYADWSDSFWSRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARYQD---EDGLWYQDLDDPDPGN 245 (336)
T ss_dssp ESEEETTSSSTTST--BHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTST---TTSBEBSBTTTTTTTS
T ss_pred eeccCCCCCcCcccccCcchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhcCC---CCCCcceecCCCCCCC
Confidence 0 0 12444444344455555566543 4444445555444433211 1121 11122 12
Q ss_pred CccccchHHHHHHHHH
Q 015433 378 YSLFEGIGGMTHLFLD 393 (407)
Q Consensus 378 ~sL~~G~aGi~~~Ll~ 393 (407)
+-=-.|.|.++++|++
T Consensus 246 ~~etSatA~~a~~l~~ 261 (336)
T PF07470_consen 246 YRETSATAMFAYGLLR 261 (336)
T ss_dssp -BEHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 2224578888888876
No 29
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=92.54 E-value=0.31 Score=45.87 Aligned_cols=131 Identities=18% Similarity=0.186 Sum_probs=76.5
Q ss_pred hHHHHHHHHcccCC-C--chHHHHHHHHHHHHHcccCCCCCCCCCCCCCC--cccccccCc-hhHHHHHHHHHHHhCcH-
Q 015433 228 LAGIMHVLMDMELK-P--DEVEDVKGTLRYMIKNRFPSGNYPSSEGSESD--RLVHWCHGA-PGVTLTLAKAAEVFGEK- 300 (407)
Q Consensus 228 ~aGI~~~L~~~~~~-~--~~~~~i~~~l~~~~~~~~~~gnwp~~~~~~~~--~~~~WChG~-~Gi~~~l~~~~~~~~~~- 300 (407)
..--+.+|++++.. . .+.+.+.++|+|+++.|+++|.||-....... ..+.+--++ .+++..|..+....++.
T Consensus 41 T~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~~~~~ 120 (289)
T PF09492_consen 41 TTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGKGDFA 120 (289)
T ss_dssp THHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-TTST
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhcCCcc
Confidence 34566677777643 2 35788999999999999999999865432211 112222233 45555666666544332
Q ss_pred --------HHHHHHHHHHHHHHHhCC-----------------C-----C---CCccccc-chhHHHHHHHHHHHhCCHH
Q 015433 301 --------EFLQAAVDAGEVVWKRGL-----------------L-----K---RVGICHG-ISGNTYVFLSLYRLTGNVE 346 (407)
Q Consensus 301 --------~~~~~~~~~~~~~~~~g~-----------------~-----~---~~~lCHG-~aG~~~~ll~l~~~t~~~~ 346 (407)
+..+.+.++++++.+... + + -++||-+ .+|+..+|+.+++.+ ++
T Consensus 121 ~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps--~~ 198 (289)
T PF09492_consen 121 FVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSGSESVGIVRFLMSLPNPS--PE 198 (289)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT-SB---STT--SSEECCCHHHHHHHHCTSSS----HH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcccccccccccCCCcccccccHHHHHHHHhcCCCCC--HH
Confidence 567777777888765421 0 1 2788866 457777777777666 77
Q ss_pred HHHHHHHHHHHHHH
Q 015433 347 YLYRAKAFACFLYD 360 (407)
Q Consensus 347 ~~~~a~~~~~~~~~ 360 (407)
++........|+-+
T Consensus 199 v~~aI~~AvaWl~~ 212 (289)
T PF09492_consen 199 VLAAIEAAVAWLES 212 (289)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHh
Confidence 77776666666643
No 30
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=90.13 E-value=2.2 Score=42.10 Aligned_cols=72 Identities=28% Similarity=0.409 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhCcH-----HHHHHHHHHHHHHHHhCCCCCCccccc--------------------chhHHHHHHHHHH
Q 015433 286 VTLTLAKAAEVFGEK-----EFLQAAVDAGEVVWKRGLLKRVGICHG--------------------ISGNTYVFLSLYR 340 (407)
Q Consensus 286 i~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~lCHG--------------------~aG~~~~ll~l~~ 340 (407)
.+++++.++++++++ +|++.|++..+.++ .+. +...|.| ...-+.+..++|+
T Consensus 93 ~~la~l~aye~t~~~~~~~~~yL~~A~~i~~~~~-~~w--d~~~cgGGi~W~~~~~~~~~~~Kna~sN~~~~~laarL~~ 169 (370)
T PF03663_consen 93 WALALLRAYELTGDQPSDNPKYLDLAKEIFDFLI-SGW--DDTSCGGGIWWSIDDTNSGYDYKNAISNGPAAQLAARLYR 169 (370)
T ss_dssp HHHHHHHHHHHH--H-----HHHHHHHHHHHHHH-HTB---SGG-GS-BEEET----TEEEEEEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHH-Hhc--CCccCCCCccccccccCCCCCcccccchHHHHHHHHHHHH
Confidence 678899999999999 99999999988876 333 1112222 2234455567888
Q ss_pred HhCCHHHHHHHHHHHHHHHH
Q 015433 341 LTGNVEYLYRAKAFACFLYD 360 (407)
Q Consensus 341 ~t~~~~~~~~a~~~~~~~~~ 360 (407)
.|+++.|++.|.+..+|+.+
T Consensus 170 ~t~~~~Yl~~A~~~~~W~~~ 189 (370)
T PF03663_consen 170 ITGDQTYLDWAKKIYDWMRD 189 (370)
T ss_dssp HH--HHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHhhc
Confidence 89999999999999999988
No 31
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=88.53 E-value=1.7 Score=42.81 Aligned_cols=74 Identities=20% Similarity=0.190 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCC-CC-Cc--------------------ccccchhHHHHHHHHHHHhCC
Q 015433 287 TLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLL-KR-VG--------------------ICHGISGNTYVFLSLYRLTGN 344 (407)
Q Consensus 287 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~-~~--------------------lCHG~aG~~~~ll~l~~~t~~ 344 (407)
+.+.++++++++++.|++.|+++.+.+.+.+++ .+ .- .+.|+. +..+..||+.|++
T Consensus 161 ~~laarL~~~t~~~~Yl~~A~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c~~~~~~~~TYNqG~~--l~a~~~Ly~~T~~ 238 (370)
T PF03663_consen 161 AQLAARLYRITGDQTYLDWAKKIYDWMRDSGLIDPSTGLVYDGINIDGNCTNINKTKWTYNQGVF--LGAAAYLYNATND 238 (370)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHB--TTS-B--EE-TTSSS-B-TT---HHHHHHH--HHHHHHHHHHH--
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhhcceeEECCCcEEEeCCccCCCCCcCCCceechHHHHH--HHHHHHHHHhcCC
Confidence 344566777889999999999998776653433 11 22 333333 4667788999987
Q ss_pred H-HHHHHHHHHHHHHHHHH
Q 015433 345 V-EYLYRAKAFACFLYDRA 362 (407)
Q Consensus 345 ~-~~~~~a~~~~~~~~~~~ 362 (407)
+ .|+++|.++++..++..
T Consensus 239 ~~~yl~~A~~la~~~~~~~ 257 (370)
T PF03663_consen 239 EQTYLDRAEKLADAAINHF 257 (370)
T ss_dssp H-HHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHh
Confidence 7 99999999999988773
No 32
>PLN02993 lupeol synthase
Probab=87.99 E-value=41 Score=36.46 Aligned_cols=147 Identities=10% Similarity=0.040 Sum_probs=78.9
Q ss_pred cccccchhhHHHHHHHHhhHhCCC---CCcHHHHHHHHHHHHHHhHHhhhcCCCCCcccccCCccCCcccchHHHHHHHH
Q 015433 160 NELLYGRVGFLWACSFLNKHMGKD---TISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLM 236 (407)
Q Consensus 160 ~d~~~G~AG~l~~ll~l~~~~~~~---~~~~~~i~~i~~~ii~~~~~~~~~~~~pl~~~~~~~~~~G~aHG~aGI~~~L~ 236 (407)
.+...+.+-++-+|..+.+..++. .+ +..+++.++.|.+..... + .|.+.-...+..|.+-.+.+|.
T Consensus 560 ~~~~dcT~~vl~aL~~~~~~~p~~r~~ei-~~~i~rAv~yL~~~Q~~D---G------SW~G~Wgv~y~YgT~~aL~aL~ 629 (763)
T PLN02993 560 REYVECTSAVIQALVLFKQLYPDHRTKEI-IKSIEKAVQFIESKQTPD---G------SWYGNWGICFIYATWFALGGLA 629 (763)
T ss_pred CCCcCHHHHHHHHHHHhcccCcchhhhhH-HHHHHHHHHHHHHhcCCC---C------CcccccccccCcHHHHHHHHHH
Confidence 345556777777777765433321 11 335555566555432211 1 2444322344458888888888
Q ss_pred cccCCCchHHHHHHHHHHHHHcccCCCCCCCCCCC-CCCcccccc--cCc-hhHHHHHHHHHHHhCcHHHHHHHHHHHHH
Q 015433 237 DMELKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGS-ESDRLVHWC--HGA-PGVTLTLAKAAEVFGEKEFLQAAVDAGEV 312 (407)
Q Consensus 237 ~~~~~~~~~~~i~~~l~~~~~~~~~~gnwp~~~~~-~~~~~~~WC--hG~-~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~ 312 (407)
..+...+..+.++++++|+++.|.++|.|-.+... ....++.-= +.. .+.+.+++.+...-..++....++++++.
T Consensus 630 a~G~~~~~~~~IrrAv~fLls~Q~~DGGWGEs~~S~~~~~y~~~~~~~St~~qTAwAllaL~~aG~~~~~~~~l~Rgi~~ 709 (763)
T PLN02993 630 AAGKTYNDCLAMRKGVHFLLTIQRDDGGWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLIHAGQAERDLIPLHRAAKL 709 (763)
T ss_pred HcCCCCCCcHHHHHHHHHHHHhcCCCCCcCcCcCcCCCcccccCCCCCCchhhHHHHHHHHHHcCCCCCCcHHHHHHHHH
Confidence 77655444568899999999998899988643211 111111100 011 34445554444432122233456677777
Q ss_pred HHHh
Q 015433 313 VWKR 316 (407)
Q Consensus 313 ~~~~ 316 (407)
+.++
T Consensus 710 L~~~ 713 (763)
T PLN02993 710 IITS 713 (763)
T ss_pred HHhc
Confidence 7654
No 33
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=87.40 E-value=0.5 Score=37.40 Aligned_cols=58 Identities=19% Similarity=0.225 Sum_probs=12.4
Q ss_pred HHHHHHHHHHcccCCCCCCCCCCCCCCcccccccCchhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Q 015433 248 VKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKR 316 (407)
Q Consensus 248 i~~~l~~~~~~~~~~gnwp~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (407)
|+++++|+++.|.++|.|+.... +...+...++.+....+++.+.+.++++.+.+.+.
T Consensus 1 i~~~~~~l~~~Q~~dG~W~~~~~-----------~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~ 58 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWGYNWG-----------SDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSH 58 (109)
T ss_dssp ---------------------------------------------------TS-SSBSSHHHHHHHHH-
T ss_pred Ccccccccccccccccccccccc-----------ccccccccccccccccCCCCcHHHHHHHHHHHHHh
Confidence 46789999999999999964421 22222233333344445667777888888887665
No 34
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=86.72 E-value=13 Score=35.10 Aligned_cols=145 Identities=14% Similarity=0.170 Sum_probs=87.0
Q ss_pred chhhHHHHHHHHhhHhCCCCCcHHHHHHHHHHHHHHhHHhhhcCCCCCcccccCCccCC---cc-cchHHHHHHHHcccC
Q 015433 165 GRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWG---AA-HGLAGIMHVLMDMEL 240 (407)
Q Consensus 165 G~AG~l~~ll~l~~~~~~~~~~~~~i~~i~~~ii~~~~~~~~~~~~pl~~~~~~~~~~G---~a-HG~aGI~~~L~~~~~ 240 (407)
+..--+..|+.+++.++++.+. +.+.+.++.|+..... .+.+|-.|.-.+ .|.+ |. +++..++-+|..+..
T Consensus 45 aT~~e~~fLa~~y~~t~d~~y~-~A~~rgld~LL~aQyp---nGGWPQf~p~~~-~Y~~~ITfND~am~~vl~lL~~i~~ 119 (290)
T TIGR02474 45 ATVTEIRYLAQVYQQEKNAKYR-DAARKGIEYLLKAQYP---NGGWPQFYPLKG-GYSDAITYNDNAMVNVLTLLDDIAN 119 (290)
T ss_pred cHHHHHHHHHHHHHhcCchhHH-HHHHHHHHHHHhhhCC---CCCcCcccCCcC-CcccccccCcHHHHHHHHHHHHHHh
Confidence 3456677788888888887764 5778888888875321 234553332111 1111 11 235677777765532
Q ss_pred C-------C-----chHHHHHHHHHHHHHcccCCCC----CCCCCCC------C-CC-cccccccCc-hhHHHHHHHHHH
Q 015433 241 K-------P-----DEVEDVKGTLRYMIKNRFPSGN----YPSSEGS------E-SD-RLVHWCHGA-PGVTLTLAKAAE 295 (407)
Q Consensus 241 ~-------~-----~~~~~i~~~l~~~~~~~~~~gn----wp~~~~~------~-~~-~~~~WChG~-~Gi~~~l~~~~~ 295 (407)
. . .....+.++++++++.|.+.|. |...... . .. .+.+.|-+- .||+..|+...
T Consensus 120 ~~~~~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~- 198 (290)
T TIGR02474 120 GKDPFDVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQP- 198 (290)
T ss_pred ccCCcccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCC-
Confidence 1 1 1245688899999999886553 4322211 0 11 256777654 57777776654
Q ss_pred HhCcHHHHHHHHHHHHHHHHh
Q 015433 296 VFGEKEFLQAAVDAGEVVWKR 316 (407)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~ 316 (407)
-.++++++.+..+++..-+.
T Consensus 199 -~ps~~i~~ai~~A~~W~~~~ 218 (290)
T TIGR02474 199 -NPSAEIKEAIRAGVAWFDTS 218 (290)
T ss_pred -CCCHHHHHHHHHHHHHHHHC
Confidence 24678999998888766544
No 35
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=85.64 E-value=7.6 Score=36.70 Aligned_cols=115 Identities=13% Similarity=0.105 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCC---------------CCCcccccchhHHH-HHHHHHHHhCCH--
Q 015433 284 PGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLL---------------KRVGICHGISGNTY-VFLSLYRLTGNV-- 345 (407)
Q Consensus 284 ~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---------------~~~~lCHG~aG~~~-~ll~l~~~t~~~-- 345 (407)
.--+..|++++..++|++|++.+.++++.+.+..+. .-.++-.+.+.+.. +|..+++..++-
T Consensus 42 ~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~~~~~~ 121 (289)
T PF09492_consen 42 TTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGKGDFAF 121 (289)
T ss_dssp HHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-TTSTT
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhcCCccc
Confidence 355667899999999999999999999999765321 11344455555544 444455544433
Q ss_pred ---HHHHHHHHH----HHHHHHHHhhh--hhcCCC---------CC---CCCcCccccch-HHHHHHHHHccCCC
Q 015433 346 ---EYLYRAKAF----ACFLYDRAQKL--IAEGKM---------HG---GDRPYSLFEGI-GGMTHLFLDMIEPS 398 (407)
Q Consensus 346 ---~~~~~a~~~----~~~~~~~~~~~--~~~g~~---------~~---~~~~~sL~~G~-aGi~~~Ll~l~~p~ 398 (407)
....++.+. .+++++..... ...+|. +. .-+++||..+. +||+-+|+++-+|+
T Consensus 122 v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps 196 (289)
T PF09492_consen 122 VDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSGSESVGIVRFLMSLPNPS 196 (289)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT-SB---STT--SSEECCCHHHHHHHHCTSSS--
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcccccccccccCCCcccccccHHHHHHHHhcCCCCC
Confidence 334444443 34444432210 001111 10 12578998875 68999999998876
No 36
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=85.63 E-value=2.1 Score=41.70 Aligned_cols=130 Identities=22% Similarity=0.173 Sum_probs=76.1
Q ss_pred HHHHHHcccC--CCchHHHHHHHHHHHHHccc--CCCCCCCCCCCCC-CcccccccCchhHHHHHHHHHHHhCcHHHHHH
Q 015433 231 IMHVLMDMEL--KPDEVEDVKGTLRYMIKNRF--PSGNYPSSEGSES-DRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQA 305 (407)
Q Consensus 231 I~~~L~~~~~--~~~~~~~i~~~l~~~~~~~~--~~gnwp~~~~~~~-~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~ 305 (407)
.+++++.++. .++.++.++.+++++.+... +.|.|-....... -....=++..+=+++++.. +..++++++++.
T Consensus 26 ~~~~fa~a~~~g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~~~~~~~~~Y~~af~l~ala~-~~~tg~~~~~~~ 104 (346)
T PF07221_consen 26 QLYTFARAYRLGRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGGPLDPQKDLYDQAFALLALAE-ARATGDPEALEL 104 (346)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTEEEE--EEHHHHHHHHHHHHH-HHCTT-TTHHHH
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCCCCccccchHHHHHHHHHHHH-HHHhCChhHHHH
Confidence 4555554433 33457889999999977554 3465533321111 0011123333334555566 566889999999
Q ss_pred HHHHHHHHHHhC------CC-----CCCcccccch---hHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 015433 306 AVDAGEVVWKRG------LL-----KRVGICHGIS---GNTYVFLSLYRLTGNVEYLYRAKAFACFLYDR 361 (407)
Q Consensus 306 ~~~~~~~~~~~g------~~-----~~~~lCHG~a---G~~~~ll~l~~~t~~~~~~~~a~~~~~~~~~~ 361 (407)
|+++.+.+.++- .. .+...-.+.. =.+.+++.+++.+++++|+++|.++++.+++.
T Consensus 105 A~~~~~~l~~~~~d~~~g~~~~~~~~~~~~~r~~n~~mhl~eA~l~l~~~~~~~~~~~~a~~l~~~~~~~ 174 (346)
T PF07221_consen 105 AEQTLEFLERRFWDPEGGGYRESFDPDWSPPRGQNPHMHLLEAFLALYEATGDPRYLDRAEELLDLFLDR 174 (346)
T ss_dssp HHHHHHHHHHHTEETTTTEE--EETTTSSCBEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcccccCcceeccCCccccCCCCChhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 999988875541 11 1111111211 12456788999999999999999988887754
No 37
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=82.48 E-value=6.7 Score=37.39 Aligned_cols=84 Identities=24% Similarity=0.328 Sum_probs=61.5
Q ss_pred cccCchhHHHH-HHHHHHHhCcHHHHHHHHHHHHHHHHhC-----C------------C-CCCcccccchhHHHHHHHHH
Q 015433 279 WCHGAPGVTLT-LAKAAEVFGEKEFLQAAVDAGEVVWKRG-----L------------L-KRVGICHGISGNTYVFLSLY 339 (407)
Q Consensus 279 WChG~~Gi~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~------------~-~~~~lCHG~aG~~~~ll~l~ 339 (407)
-|--..|.++. ++.+...++++-+.+.++++.+.+|++. + . ++.|+--|+-.--..++.+|
T Consensus 182 tctac~gtlilefaals~~tg~~ifee~arkaldflwekr~rss~l~g~~inihsgdw~rkdsgigagidsyyey~lkay 261 (587)
T KOG2430|consen 182 TCTACAGTLILEFAALSRFTGAPIFEEKARKALDFLWEKRHRSSDLMGTTINIHSGDWTRKDSGIGAGIDSYYEYLLKAY 261 (587)
T ss_pred chhhccchhhhhHHHHhhccCChhhHHHHHHHHHHHHHHhcccccccceeEEeccCcceecccCcCcchHHHHHHHHHHh
Confidence 34444555554 5555666889999999999999999752 1 1 23677777777788889999
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHH
Q 015433 340 RLTGNVEYLYRAKAFACFLYDRA 362 (407)
Q Consensus 340 ~~t~~~~~~~~a~~~~~~~~~~~ 362 (407)
-+.||+.|++|-.+--+.+..+.
T Consensus 262 illgddsfldrfn~hydai~ryi 284 (587)
T KOG2430|consen 262 ILLGDDSFLDRFNKHYDAIKRYI 284 (587)
T ss_pred heeccHHHHHHHHHHHHHHHHHh
Confidence 99999999998766655555543
No 38
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=78.68 E-value=86 Score=32.46 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Q 015433 331 NTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQ 363 (407)
Q Consensus 331 ~~~~ll~l~~~t~~~~~~~~a~~~~~~~~~~~~ 363 (407)
.++.+..+||.|+|++|++.|.++++-+.+..+
T Consensus 426 ~iES~fylyR~TgD~~yre~gW~~f~ai~k~~r 458 (522)
T PTZ00470 426 TVESIFILYRLTGDPKYREWAWKIFQAIEKHCK 458 (522)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 466778899999999999999988877766543
No 39
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=78.34 E-value=11 Score=38.81 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHh-----CCC-----------CCC---cccccchhHHH---HHHHHHHHhCC
Q 015433 287 TLTLAKAAEVFGEKEFLQAAVDAGEVVWKR-----GLL-----------KRV---GICHGISGNTY---VFLSLYRLTGN 344 (407)
Q Consensus 287 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~-----------~~~---~lCHG~aG~~~---~ll~l~~~t~~ 344 (407)
+=.|+.++...+|+.+++.|+.+++.+... |+. ... +-|..+|..+- =|..+.++|||
T Consensus 161 LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdTptgiP~~~vnl~~g~~~~~~~~~~~~~lAe~gSl~LEF~~LS~lTGd 240 (522)
T PTZ00470 161 LGGLLSAYDLTGDEMYLEKAREIADRLLPAFNEDTGFPASEINLATGRKSYPGWAGGCSILSEVGTLQLEFNYLSEITGD 240 (522)
T ss_pred HhHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccCCCCCcccCCCccchhhhhhHHHHHHHHHHhhCC
Confidence 346788888899999999999988876431 221 111 12222333333 36778899999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 015433 345 VEYLYRAKAFACFLYDR 361 (407)
Q Consensus 345 ~~~~~~a~~~~~~~~~~ 361 (407)
++|.+.|.++.+.+.+.
T Consensus 241 ~kY~~~a~~i~~~l~~~ 257 (522)
T PTZ00470 241 PKYAEYVDKVMDALFSM 257 (522)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999988887654
No 40
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=78.12 E-value=14 Score=35.61 Aligned_cols=58 Identities=22% Similarity=0.221 Sum_probs=35.6
Q ss_pred HHHHHHHHHHcccCCCCCCCCCCCCCCcccccccCchhHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHhC
Q 015433 248 VKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGE-KEFLQAAVDAGEVVWKRG 317 (407)
Q Consensus 248 i~~~l~~~~~~~~~~gnwp~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~g 317 (407)
|+++++|+.+.|.++|.|+... .........+.+....+. +++.+.++++++.+.+..
T Consensus 1 ~~~~~~~L~~~Q~~dG~W~~~~------------~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q 59 (348)
T cd02889 1 IRRALDFLLSLQAPDGHWPGEY------------SQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQ 59 (348)
T ss_pred CchHHHHHHHhccCCCCccccC------------CchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcC
Confidence 3568999999888999997542 112211122222222333 567788888888877765
No 41
>PLN02993 lupeol synthase
Probab=76.83 E-value=59 Score=35.25 Aligned_cols=142 Identities=13% Similarity=0.170 Sum_probs=80.4
Q ss_pred ccchhhHHHHHHHHhhHhCC---CCCcHHHHHHHHHHHHHHhHHhhhcCCCCC-----cccccCC-----------ccCC
Q 015433 163 LYGRVGFLWACSFLNKHMGK---DTISTAQMRAVVDEIIKAGRRLANRGRCPL-----MYEWHGK-----------KYWG 223 (407)
Q Consensus 163 ~~G~AG~l~~ll~l~~~~~~---~~~~~~~i~~i~~~ii~~~~~~~~~~~~pl-----~~~~~~~-----------~~~G 223 (407)
..=.|-.+.+++.+.+.-.+ +.+..+.+.+.++.|+.-.... +.++- .+.|-.. ...-
T Consensus 485 sDdTAe~lka~l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~d---GG~aafe~~~~~~~le~ln~ae~f~~~miD~~ 561 (763)
T PLN02993 485 SDCTAEALKCCMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSEN---GGVTAWEPVRAYKWLELLNPTDFFANTMVERE 561 (763)
T ss_pred CCchHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHhhccCC---CCEEeeeCCCchhHHHcCCHHHhhcCcccCCC
Confidence 33456777766666554322 3344567777777777643221 11110 0011110 1134
Q ss_pred cccchHHHHHHHHcccC-CCc-----hHHHHHHHHHHHHHcccCCCCCCCCCCCCCCcccccccCchhHHHHHHHHHHHh
Q 015433 224 AAHGLAGIMHVLMDMEL-KPD-----EVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVF 297 (407)
Q Consensus 224 ~aHG~aGI~~~L~~~~~-~~~-----~~~~i~~~l~~~~~~~~~~gnwp~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~ 297 (407)
.+.+.+-++-+|..+.. .++ ..+.++++++|+.+.|.++|.|-.+ -.++..+|+.-.+.+|..+....
T Consensus 562 ~~dcT~~vl~aL~~~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~~DGSW~G~------Wgv~y~YgT~~aL~aL~a~G~~~ 635 (763)
T PLN02993 562 YVECTSAVIQALVLFKQLYPDHRTKEIIKSIEKAVQFIESKQTPDGSWYGN------WGICFIYATWFALGGLAAAGKTY 635 (763)
T ss_pred CcCHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHHHhcCCCCCcccc------cccccCcHHHHHHHHHHHcCCCC
Confidence 56677888888887643 222 2456899999999988899988632 22455667777777775544333
Q ss_pred CcHHHHHHHHHHHHHHHHh
Q 015433 298 GEKEFLQAAVDAGEVVWKR 316 (407)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~ 316 (407)
.+ ...++++.+.+.+.
T Consensus 636 ~~---~~~IrrAv~fLls~ 651 (763)
T PLN02993 636 ND---CLAMRKGVHFLLTI 651 (763)
T ss_pred CC---cHHHHHHHHHHHHh
Confidence 32 24566666666543
No 42
>PLN03012 Camelliol C synthase
Probab=76.06 E-value=34 Score=36.99 Aligned_cols=94 Identities=13% Similarity=0.123 Sum_probs=56.5
Q ss_pred hhhHHHHHHHHhhHhCCC---CCcHHHHHHHHHHHHHHhHHhhhcCCCCCcccccCCccCCcccchHHHHHHHHcccCCC
Q 015433 166 RVGFLWACSFLNKHMGKD---TISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKP 242 (407)
Q Consensus 166 ~AG~l~~ll~l~~~~~~~---~~~~~~i~~i~~~ii~~~~~~~~~~~~pl~~~~~~~~~~G~aHG~aGI~~~L~~~~~~~ 242 (407)
.+-.+-+|..+.+..++. .+ +..+.+.++.|.+..... + .|.+.--.-+..|.+-.+.+|+.+....
T Consensus 566 Ta~~l~aL~~f~~~~~~~r~~~i-~~~i~rAv~~L~~~Q~~D---G------sW~G~Wgv~y~YgT~~aL~aL~a~g~~~ 635 (759)
T PLN03012 566 TSSAIQALILFKQLYPDHRTEEI-NAFIKKAAEYIENIQMLD---G------SWYGNWGICFTYGTWFALAGLAAAGKTF 635 (759)
T ss_pred HHHHHHHHHHHhhhCcccchhhh-HHHHHHHHHHHHHhcCCC---C------CCcccccccCCcHHHHHHHHHHHhCccC
Confidence 555667777666544321 12 345555666655432211 1 1433322334457877888887776543
Q ss_pred chHHHHHHHHHHHHHcccCCCCCCCCC
Q 015433 243 DEVEDVKGTLRYMIKNRFPSGNYPSSE 269 (407)
Q Consensus 243 ~~~~~i~~~l~~~~~~~~~~gnwp~~~ 269 (407)
...+.|+++++|+++.|.++|.|.-+.
T Consensus 636 ~~~~~Irrav~fLls~Q~~DGGWGEs~ 662 (759)
T PLN03012 636 NDCEAIRKGVHFLLAAQKDNGGWGESY 662 (759)
T ss_pred CCcHHHHHHHHHHHHhcCCCCCcCCCC
Confidence 334689999999999999999886543
No 43
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.82 E-value=26 Score=35.51 Aligned_cols=75 Identities=20% Similarity=0.243 Sum_probs=49.8
Q ss_pred CCCcccCcHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhcC--CCCCCceeeCCchH--H--HHHHHHHHHHcCChhHH
Q 015433 69 DYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSAS--RDSGRVTFICGRAG--V--CALGAVLAKHAGDERLL 142 (407)
Q Consensus 69 ~~~ly~G~~Gial~l~~l~~~~~~~~~~~~a~~~l~~~~~~~--~~~~~~~~~~G~~G--i--~~~~~~l~~~~~~~~~~ 142 (407)
..-.|.|-.||-+++.++|++|++++|+++|...+..-...+ +...... .|.+= + +.-++.++..+||+...
T Consensus 173 q~~g~~gH~eielAl~~Ly~~Tg~~rYL~LA~~Fi~~rg~~P~~~rg~e~~--~gHAvr~iyl~~G~A~l~~~~gDds~r 250 (589)
T COG3533 173 QVPGYCGHPEIELALAELYRLTGDQRYLDLARRFIHQRGVEPLAQRGDELE--GGHAVRQIYLYIGAADLAEETGDDSLR 250 (589)
T ss_pred ccccccCCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccChhhcCchhhh--hhhHHHHHHHhhhHHHHHHHhCCHHHH
Confidence 456799999999999999999999999999998887532211 1111111 33322 1 12235678889997655
Q ss_pred HHH
Q 015433 143 DHY 145 (407)
Q Consensus 143 ~~~ 145 (407)
+.+
T Consensus 251 ~~~ 253 (589)
T COG3533 251 QAA 253 (589)
T ss_pred HHH
Confidence 543
No 44
>PLN03012 Camelliol C synthase
Probab=67.81 E-value=1.9e+02 Score=31.50 Aligned_cols=102 Identities=16% Similarity=0.188 Sum_probs=61.5
Q ss_pred cccccchhhHHHHHHHHhhHhCCCCCcHHHHHHHHHHHHHHhHHhhhcCCCCCcc-cccCCccCCcccc---hHHHHHHH
Q 015433 160 NELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMY-EWHGKKYWGAAHG---LAGIMHVL 235 (407)
Q Consensus 160 ~d~~~G~AG~l~~ll~l~~~~~~~~~~~~~i~~i~~~ii~~~~~~~~~~~~pl~~-~~~~~~~~G~aHG---~aGI~~~L 235 (407)
.++.+|.+-.+.+|..+.+...+ ...|++-++.|++..+... .+.-.| ....+.|.+.--| +..-++++
T Consensus 615 v~y~YgT~~aL~aL~a~g~~~~~----~~~Irrav~fLls~Q~~DG---GWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl 687 (759)
T PLN03012 615 ICFTYGTWFALAGLAAAGKTFND----CEAIRKGVHFLLAAQKDNG---GWGESYLSCPKKIYIAQEGEISNLVQTAWAL 687 (759)
T ss_pred ccCCcHHHHHHHHHHHhCccCCC----cHHHHHHHHHHHHhcCCCC---CcCCCCCCCCCccccCCCCCCCcHHHHHHHH
Confidence 46788888888888776544332 2477888888887643322 111111 1123345553211 35666666
Q ss_pred Hcc---cCCCchHHHHHHHHHHHHHcccCCCCCCCC
Q 015433 236 MDM---ELKPDEVEDVKGTLRYMIKNRFPSGNYPSS 268 (407)
Q Consensus 236 ~~~---~~~~~~~~~i~~~l~~~~~~~~~~gnwp~~ 268 (407)
+-+ +........++++++|+++.|.++|.||..
T Consensus 688 ~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W~q~ 723 (759)
T PLN03012 688 MGLIHAGQAERDPIPLHRAAKLIINSQLENGDFPQQ 723 (759)
T ss_pred HHHHHcCCCCCCcHHHHHHHHHHHHcccCCCCCCCc
Confidence 554 222222346899999999988899999864
No 45
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=63.26 E-value=3.4 Score=26.92 Aligned_cols=34 Identities=29% Similarity=0.687 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHcccCCCCCCCCCCCCCCcccccc
Q 015433 247 DVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWC 280 (407)
Q Consensus 247 ~i~~~l~~~~~~~~~~gnwp~~~~~~~~~~~~WC 280 (407)
+++++++|+++.|.++|.|....+...+....||
T Consensus 2 d~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~ 35 (44)
T PF00432_consen 2 DVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYC 35 (44)
T ss_dssp HHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHH
Confidence 3677899999988889988655433333344444
No 46
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=59.13 E-value=1.7e+02 Score=31.02 Aligned_cols=41 Identities=12% Similarity=0.300 Sum_probs=27.7
Q ss_pred cchHHHHHHHHcccCCCchHHHHHHHHHHHHHcccCCCCCC
Q 015433 226 HGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYP 266 (407)
Q Consensus 226 HG~aGI~~~L~~~~~~~~~~~~i~~~l~~~~~~~~~~gnwp 266 (407)
.|.+=++.+|..+.......+.++++++|+++.|.++|.|-
T Consensus 489 YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~DGGWg 529 (621)
T TIGR01787 489 YGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMPDGGWG 529 (621)
T ss_pred hhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCCCCCCC
Confidence 34444455666554432223678999999999888899885
No 47
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=58.26 E-value=2.6e+02 Score=29.85 Aligned_cols=41 Identities=12% Similarity=0.245 Sum_probs=29.4
Q ss_pred hHHHHHHHHcccC--CCchHHHHHHHHHHHHHcccCCCCCCCC
Q 015433 228 LAGIMHVLMDMEL--KPDEVEDVKGTLRYMIKNRFPSGNYPSS 268 (407)
Q Consensus 228 ~aGI~~~L~~~~~--~~~~~~~i~~~l~~~~~~~~~~gnwp~~ 268 (407)
.+-++.+|..... .+...+.++++++|+++.|.++|.|+.-
T Consensus 383 Ta~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Qn~dGgw~af 425 (635)
T TIGR01507 383 TAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQSSNGGWGAF 425 (635)
T ss_pred HHHHHHHHHHcCCCccccchHHHHHHHHHHHHhcCCCCCEecc
Confidence 4557777766532 1223568999999999988899999753
No 48
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=56.81 E-value=19 Score=31.80 Aligned_cols=53 Identities=25% Similarity=0.381 Sum_probs=36.5
Q ss_pred CCCCCCCCCCC-----CCCcccccccCch-hHHH-HHHHHHHHhCcHHHHHHHHHHHHHH
Q 015433 261 PSGNYPSSEGS-----ESDRLVHWCHGAP-GVTL-TLAKAAEVFGEKEFLQAAVDAGEVV 313 (407)
Q Consensus 261 ~~gnwp~~~~~-----~~~~~~~WChG~~-Gi~~-~l~~~~~~~~~~~~~~~~~~~~~~~ 313 (407)
++|.||..... .......|=-+.+ |.++ ++.+|+..++|++|++.|+++++..
T Consensus 3 ~~g~w~~~~~~~~~~~~~~l~~gW~SamaQG~a~s~l~RAy~~t~d~~Yl~aA~~al~~f 62 (189)
T PF06662_consen 3 ESGGWPYNFDYKLYEGNEVLSPGWYSAMAQGQAISVLARAYQLTGDEKYLDAAKKALNSF 62 (189)
T ss_pred CcCccceeeeeccccCcccCCCCcHhHHHHHHHHHHHHHHHHhHCCHHHHHHHHHHHHHh
Confidence 46778754321 1123467766554 4444 5889999999999999999998763
No 49
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=56.67 E-value=2e+02 Score=30.70 Aligned_cols=71 Identities=13% Similarity=0.267 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHhHHhhhcCCCCCcccccCCccCCcccchHHHHHHHHcccCCCchHHHHHHHHHHHHHcccCCCCCC
Q 015433 187 TAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYP 266 (407)
Q Consensus 187 ~~~i~~i~~~ii~~~~~~~~~~~~pl~~~~~~~~~~G~aHG~aGI~~~L~~~~~~~~~~~~i~~~l~~~~~~~~~~gnwp 266 (407)
+..+++.++.|.+..+.. +. |.+.-...+..|.+-.+.+|...+... ..+.++++++|+++.|.++|.|.
T Consensus 470 ~~~i~rav~~L~~~Q~~d---G~------W~g~wg~~~~Y~T~~al~aL~~~g~~~-~~~~i~rAv~wL~~~Q~~DGGWg 539 (635)
T TIGR01507 470 WPVIERAVEYLKREQEPD---GS------WFGRWGVNYLYGTGAVLSALKAVGIDT-REPYIQKALAWLESHQNPDGGWG 539 (635)
T ss_pred hHHHHHHHHHHHHccCCC---CC------CccCCCCccccHHHHHHHHHHHcCCCc-ccHHHHHHHHHHHHhcCCCCCCC
Confidence 456677777776643211 11 222111223445555666666554322 24678899999999888999886
Q ss_pred C
Q 015433 267 S 267 (407)
Q Consensus 267 ~ 267 (407)
.
T Consensus 540 e 540 (635)
T TIGR01507 540 E 540 (635)
T ss_pred C
Confidence 3
No 50
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=55.55 E-value=1.8e+02 Score=30.96 Aligned_cols=44 Identities=11% Similarity=0.069 Sum_probs=29.8
Q ss_pred cccchHHHHHHHHcccCCCchHHHHHHHHHHHHHcccCCCCCCCC
Q 015433 224 AAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPSS 268 (407)
Q Consensus 224 ~aHG~aGI~~~L~~~~~~~~~~~~i~~~l~~~~~~~~~~gnwp~~ 268 (407)
+..|.+=.+.+|.......+ .+.++++++|+++.|.++|.|...
T Consensus 504 ~~Y~T~~al~aL~~~G~~~~-~~~i~rA~~~Ll~~Q~~DGgWg~~ 547 (634)
T TIGR03463 504 FTYGTFHGVMGLRAAGASPD-DMALQRAAAWLRSYQRADGGWGEV 547 (634)
T ss_pred CcHHHHHHHHHHHHcCCCcC-cHHHHHHHHHHHHccCCCCCccCc
Confidence 34455556666655543322 367889999999988899988643
No 51
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=55.10 E-value=83 Score=32.02 Aligned_cols=75 Identities=20% Similarity=0.214 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCC-------CCCcc--cc--cchhHHHHHHHHHHHhCCHHHHHHHHHH
Q 015433 286 VTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLL-------KRVGI--CH--GISGNTYVFLSLYRLTGNVEYLYRAKAF 354 (407)
Q Consensus 286 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-------~~~~l--CH--G~aG~~~~ll~l~~~t~~~~~~~~a~~~ 354 (407)
.++.+..++.+..|+.+.+.+..+++ ..|+. ..+.+ -+ -..=.+++++.+|+.|++++|++.|.++
T Consensus 389 yll~~vra~~~s~D~~Lw~~~~~m~~---~~gLGdig~~~~~~~~~~~~~~~~sp~~L~allEL~~atq~~~~l~lA~~~ 465 (557)
T PF06917_consen 389 YLLPYVRAYRLSRDPELWDLARTMAH---HFGLGDIGNAAGKEPRVNMQTDNASPYLLFALLELYQATQDARYLELADQV 465 (557)
T ss_dssp HHHHHHHHHHHS--HHHHHHHHHHHH---HTT-EE-TTBTTBS-EE-TT-----HHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HhHHHHHHHHcCCCHHHHHHHHHHHh---hcCcccccCccccccccccCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 45678888888889998888877654 22331 11111 11 1233567889999999999999999999
Q ss_pred HHHHHHHHh
Q 015433 355 ACFLYDRAQ 363 (407)
Q Consensus 355 ~~~~~~~~~ 363 (407)
++.++++..
T Consensus 466 g~~l~~~~~ 474 (557)
T PF06917_consen 466 GENLFEQHF 474 (557)
T ss_dssp HHHHHHHHE
T ss_pred HHHHHHHHc
Confidence 999988754
No 52
>PRK11097 endo-1,4-D-glucanase; Provisional
Probab=52.49 E-value=97 Score=30.58 Aligned_cols=81 Identities=12% Similarity=0.144 Sum_probs=54.7
Q ss_pred cCchhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCCCCc----ccccchh--------------HHHHHHHHHHHh
Q 015433 281 HGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKRVG----ICHGISG--------------NTYVFLSLYRLT 342 (407)
Q Consensus 281 hG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----lCHG~aG--------------~~~~ll~l~~~t 342 (407)
-|..=|+++|+.+.+..+++.|.++++..++.|+++.....++ |-=|..| .-.+|-.+++.+
T Consensus 116 DGDl~IA~ALl~A~~~W~~~~Y~~~A~~ll~~I~~~ev~~~~g~g~~LlPG~~gF~~~~~~~~NPSY~~p~~~~~fa~~~ 195 (376)
T PRK11097 116 DADLWIAYSLLEAGRLWKEPRYTALGTALLKRIAREEVVTVPGLGSMLLPGPVGFADDGSWRLNPSYLPPQLLRRFARFL 195 (376)
T ss_pred hHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhcccccCCCceeeccccccccCCCCCeECcccccHHHHHHHHHhc
Confidence 4556689999999999999999999999998888764432222 2223322 123455566778
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 015433 343 GNVEYLYRAKAFACFLYDR 361 (407)
Q Consensus 343 ~~~~~~~~a~~~~~~~~~~ 361 (407)
++..|...+..-.+.+.+.
T Consensus 196 ~~~~W~~l~~~~~~lL~~~ 214 (376)
T PRK11097 196 PGGPWAALAATNARLLLET 214 (376)
T ss_pred CCchHHHHHHHHHHHHHHh
Confidence 8888887766655555443
No 53
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=50.61 E-value=23 Score=31.33 Aligned_cols=35 Identities=29% Similarity=0.383 Sum_probs=25.7
Q ss_pred cccccchhHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 015433 323 GICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLY 359 (407)
Q Consensus 323 ~lCHG~aG~~~~ll~l~~~t~~~~~~~~a~~~~~~~~ 359 (407)
++|-|.+ +-+|.++|+.|+|++|++.|.+..+...
T Consensus 29 amaQG~a--~s~l~RAy~~t~d~~Yl~aA~~al~~f~ 63 (189)
T PF06662_consen 29 AMAQGQA--ISVLARAYQLTGDEKYLDAAKKALNSFK 63 (189)
T ss_pred HHHHHHH--HHHHHHHHHhHCCHHHHHHHHHHHHHhc
Confidence 4444433 4567899999999999999988765543
No 54
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=49.30 E-value=23 Score=34.61 Aligned_cols=109 Identities=17% Similarity=0.312 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHcccCCCCCCCCCCC----C-CCcccccccCch-hHHH-HHHHHHHHhCcHHHHHHHHHHHHH-----
Q 015433 245 VEDVKGTLRYMIKNRFPSGNYPSSEGS----E-SDRLVHWCHGAP-GVTL-TLAKAAEVFGEKEFLQAAVDAGEV----- 312 (407)
Q Consensus 245 ~~~i~~~l~~~~~~~~~~gnwp~~~~~----~-~~~~~~WChG~~-Gi~~-~l~~~~~~~~~~~~~~~~~~~~~~----- 312 (407)
....-.+-+|+.++|.+.|.|+..... . ..-.++|-.-.+ |-++ .+.+++..++|++|++.|.+++.-
T Consensus 379 ~aaFyaAadWlV~NQd~kGGW~~pV~Rsl~egf~~L~PGW~SAMaQGhaISvL~RAy~h~~De~yL~sAa~al~pyk~~S 458 (594)
T KOG3760|consen 379 SAAFYAAADWLVKNQDDKGGWSVPVERSLAEGFLVLPPGWHSAMAQGHAISVLTRAYKHFNDEKYLKSAAKALKPYKINS 458 (594)
T ss_pred HHHHHHHHHHHhhCCCCCCCCcchhhhhhhcCccccCcchHhhhhcccchHHHHHHHHhcCcHHHHHHHHhhcCCeEeec
Confidence 344566788999999988999865432 1 122467743221 3333 578899999999999999887632
Q ss_pred -------------HHHhCCCCC-CcccccchhHHHHHHHHHHHhC--CHHHHHHHHHHH
Q 015433 313 -------------VWKRGLLKR-VGICHGISGNTYVFLSLYRLTG--NVEYLYRAKAFA 355 (407)
Q Consensus 313 -------------~~~~g~~~~-~~lCHG~aG~~~~ll~l~~~t~--~~~~~~~a~~~~ 355 (407)
+|-...... +++- .-|-+|.|+-+|.+.. ..+.-+.|.++.
T Consensus 459 ~dgGV~a~Fm~K~~WYEEYPTTP~SfV--LNGF~YSLiGLYDL~eTa~~Kia~EA~~Ly 515 (594)
T KOG3760|consen 459 SDGGVRAEFMGKNIWYEEYPTTPGSFV--LNGFLYSLIGLYDLDETARAKIAQEAQELY 515 (594)
T ss_pred CCCceEEEEccccchhhhcCCCCccee--ehhHHHHhhhhhccchhhhHHHHHHHHHHH
Confidence 121111212 2221 4577888888888732 334334444433
No 55
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=47.18 E-value=3.8e+02 Score=28.50 Aligned_cols=39 Identities=5% Similarity=0.159 Sum_probs=26.1
Q ss_pred HHHHHHHHcccC--CCchHHHHHHHHHHHHHcccCCCCCCC
Q 015433 229 AGIMHVLMDMEL--KPDEVEDVKGTLRYMIKNRFPSGNYPS 267 (407)
Q Consensus 229 aGI~~~L~~~~~--~~~~~~~i~~~l~~~~~~~~~~gnwp~ 267 (407)
++.++++..+.. .....+.++++++|+++.|.++|.|+.
T Consensus 369 a~~~la~~l~~~~~~~~~~~~l~~a~~~Ll~~Qn~dGGw~a 409 (621)
T TIGR01787 369 AVVALKAVLLLQEDEHVKRDRLRDAVNWILGMQSSNGGFAA 409 (621)
T ss_pred HHHHHHHHHhhcCcccccHHHHHHHHHHHHHHcCCCCCEee
Confidence 455544433321 222356788899999999989999975
No 56
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=46.13 E-value=1.7e+02 Score=31.11 Aligned_cols=78 Identities=12% Similarity=0.159 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhHHhhhcCCCCCccc-ccCCccCCcccc-hHHHHHHHHcccCCC-chHHHHHHHHHHHHHcccCCCC
Q 015433 188 AQMRAVVDEIIKAGRRLANRGRCPLMYE-WHGKKYWGAAHG-LAGIMHVLMDMELKP-DEVEDVKGTLRYMIKNRFPSGN 264 (407)
Q Consensus 188 ~~i~~i~~~ii~~~~~~~~~~~~pl~~~-~~~~~~~G~aHG-~aGI~~~L~~~~~~~-~~~~~i~~~l~~~~~~~~~~gn 264 (407)
..+++.++.|++..+.. +.+...|. .....|.+-.++ ..+.+++++.+.... ...+.++++++|+++.|.++|.
T Consensus 525 ~~i~rA~~~Ll~~Q~~D---GgWg~~~~s~~~~~y~~~~~S~~~~TA~Al~aL~~~g~~~~~~i~rgi~~L~~~Q~~dG~ 601 (634)
T TIGR03463 525 MALQRAAAWLRSYQRAD---GGWGEVYESCLQARYVEGKQSQAVMTSWALLALAEAGEGGHDAVQRGVAWLRSRQQEDGR 601 (634)
T ss_pred HHHHHHHHHHHHccCCC---CCccCccCccccccccCCCCCcHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhCCCCCC
Confidence 46778888887653221 11211110 011223322222 345555555543221 2245688999999998889999
Q ss_pred CCCC
Q 015433 265 YPSS 268 (407)
Q Consensus 265 wp~~ 268 (407)
|+..
T Consensus 602 W~~~ 605 (634)
T TIGR03463 602 WPRE 605 (634)
T ss_pred CCCC
Confidence 9864
No 57
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=42.63 E-value=2e+02 Score=27.59 Aligned_cols=135 Identities=19% Similarity=0.207 Sum_probs=68.3
Q ss_pred HHHHHHHHcccCCCCCCCCCCCCCCcccccccCchhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCC-CCCcccccc
Q 015433 250 GTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLL-KRVGICHGI 328 (407)
Q Consensus 250 ~~l~~~~~~~~~~gnwp~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~lCHG~ 328 (407)
....|+...+.|+|.|......+.|... |+=+. ..+.+...+..+ ..+.+++.+.+-.-. ...|+|-+.
T Consensus 130 ~l~~fi~~lk~pdGsF~~~~~gevDtr~--~Y~al----~ilsllg~~~~~----~~e~~vdyl~kCqnyeGGFg~~p~a 199 (342)
T COG5029 130 SLASFISGLKNPDGSFRSDLEGEVDTRF--LYIAL----SILSLLGDLDKE----LFEGAVDYLKKCQNYEGGFGLCPYA 199 (342)
T ss_pred HHHHHHHhccCCCCceecccCCcchHHH--HHHHH----HHHHHHhhcchh----hhHHHHHHHHHhhccCCcccCCCch
Confidence 4567887888889988766543334333 22222 222222122222 122223344332111 237788665
Q ss_pred ---hhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhcCCCCC-----CCCcCccccchHHHHHHHHHccCC
Q 015433 329 ---SGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHG-----GDRPYSLFEGIGGMTHLFLDMIEP 397 (407)
Q Consensus 329 ---aG~~~~ll~l~~~t~~~~~~~~a~~~~~~~~~~~~~~~~~g~~~~-----~~~~~sL~~G~aGi~~~Ll~l~~p 397 (407)
+|-....+...+..+.-+-+.+.++...|+..+..+ .|.+.| +|.=||++.+.+=++..-+...++
T Consensus 200 EaHag~tFcalaalalL~~Ld~ls~~E~l~~Wl~~RQ~s---sgGl~GR~nKl~D~CYs~WvlsSl~il~~~~~in~ 273 (342)
T COG5029 200 EAHAGYTFCALAALALLGKLDKLSDVEKLIRWLAERQLS---SGGLNGRSNKLVDTCYSFWVLSSLAILGKLDFINT 273 (342)
T ss_pred hhccchHHHHHHHHHHHhcccccchHHHHHHHHHHcccc---cCCcCCCcccCccchhhhhhcchHHhcchhhhcCH
Confidence 455544455455554433333456677888776432 233332 455689988887766654444443
No 58
>PLN02613 endoglucanase
Probab=42.61 E-value=3.3e+02 Score=28.10 Aligned_cols=68 Identities=19% Similarity=0.268 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHhCC-----CCC-Ccccccchh----HHHHHHHHHHHhCCHHHHHHHHH
Q 015433 286 VTLTLAKAAEVFG--EKEFLQAAVDAGEVVWKRGL-----LKR-VGICHGISG----NTYVFLSLYRLTGNVEYLYRAKA 353 (407)
Q Consensus 286 i~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~g~-----~~~-~~lCHG~aG----~~~~ll~l~~~t~~~~~~~~a~~ 353 (407)
.+-+++.++.+|+ |+.|-+.+.+.++.+|+..- ..+ ...-.+..| ...+-..||+.|++++|+..+..
T Consensus 177 ~AAALAaas~vfk~~D~~yA~~~L~~Ak~ly~~a~~~~g~y~~~~~~y~s~s~~~DEl~WAAawLy~aTGd~~Yl~~~~~ 256 (498)
T PLN02613 177 AAAALAAASLVFKDVDSSYSSKLLNHARSLFEFADKYRGSYQASCPFYCSYSGYQDELLWAAAWLYKATGEKKYLNYVIS 256 (498)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcccccCccchHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4446777788886 57776666666666665421 111 011111122 24556788999999999987654
No 59
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=42.37 E-value=1.8e+02 Score=28.07 Aligned_cols=76 Identities=26% Similarity=0.263 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCCC-Ccccccc------------hhHHHHHHHH--HHHhCCHHHHHH
Q 015433 286 VTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGI------------SGNTYVFLSL--YRLTGNVEYLYR 350 (407)
Q Consensus 286 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~lCHG~------------aG~~~~ll~l--~~~t~~~~~~~~ 350 (407)
.+.++..++. ++++++++.|+++.+.+.+...-.. -++.|=+ -..+.+++.+ ++.|+++++++.
T Consensus 26 ~~~~fa~a~~-~g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~~~~~~~~~Y~~af~l~ala~~~~tg~~~~~~~ 104 (346)
T PF07221_consen 26 QLYTFARAYR-LGRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGGPLDPQKDLYDQAFALLALAEARATGDPEALEL 104 (346)
T ss_dssp HHHHHHHHHH-TTSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTEEEE--EEHHHHHHHHHHHHHHHCTT-TTHHHH
T ss_pred HHHHHHHHHh-cCchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCCCCccccchHHHHHHHHHHHHHHHhCChhHHHH
Confidence 4567777888 8999999999999998876643111 1222111 1223333333 457899999999
Q ss_pred HHHHHHHHHHHH
Q 015433 351 AKAFACFLYDRA 362 (407)
Q Consensus 351 a~~~~~~~~~~~ 362 (407)
|.+..+++.+..
T Consensus 105 A~~~~~~l~~~~ 116 (346)
T PF07221_consen 105 AEQTLEFLERRF 116 (346)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 998888887664
No 60
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=41.28 E-value=61 Score=32.88 Aligned_cols=75 Identities=21% Similarity=0.242 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHh--CcHHHHHHHHHHHHHHHHh-----CCC------CC------C--ccc-ccchhHHHHHHHHHHHhC
Q 015433 286 VTLTLAKAAEVF--GEKEFLQAAVDAGEVVWKR-----GLL------KR------V--GIC-HGISGNTYVFLSLYRLTG 343 (407)
Q Consensus 286 i~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~-----g~~------~~------~--~lC-HG~aG~~~~ll~l~~~t~ 343 (407)
++=.|+.++... +|+.+++.|+++++.+... |+. +. . .-| +.......=|.++.+.|+
T Consensus 82 ~lGgLLSay~ls~~~d~~lL~kA~~lad~Ll~aF~t~~g~P~~~~n~~~~~~~~~~~~~~~la~~gs~~lEf~~LS~lTg 161 (452)
T PF01532_consen 82 VLGGLLSAYDLSGEGDPILLSKAVELADRLLPAFDTPTGIPYPRVNLRTGGKNRWPGGESSLAEAGSLQLEFTRLSQLTG 161 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSS---SEEETTTCEEETTCCGEEEHHHHCSSHHHHHHHHHHHS
T ss_pred hhhhhHHHHHHHhccchHHHHHHHHHHHHHHHhccCCCccccceeeecccCCCCCCCCcccccccccceechhHHHHHhh
Confidence 445688888888 8999999999999876321 221 10 1 123 344444555788999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 015433 344 NVEYLYRAKAFACFLYD 360 (407)
Q Consensus 344 ~~~~~~~a~~~~~~~~~ 360 (407)
|++|.+.|.++.+.+.+
T Consensus 162 d~kY~~~a~~~~~~l~~ 178 (452)
T PF01532_consen 162 DPKYFDAADRIYDALWR 178 (452)
T ss_dssp -THHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 99999999988877766
No 61
>PLN02266 endoglucanase
Probab=40.86 E-value=3.2e+02 Score=28.26 Aligned_cols=67 Identities=24% Similarity=0.199 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHhCCCCCCc------------ccccchh----HHHHHHHHHHHhCCHHH
Q 015433 286 VTLTLAKAAEVFG--EKEFLQAAVDAGEVVWKRGLLKRVG------------ICHGISG----NTYVFLSLYRLTGNVEY 347 (407)
Q Consensus 286 i~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~------------lCHG~aG----~~~~ll~l~~~t~~~~~ 347 (407)
++-+++.+..+++ |+.|-+.+.+.++.+|+..- +.++ .-....| ...+-..||+.|+|++|
T Consensus 195 ~AAALAaas~vfk~~D~~yA~~~L~~Ak~ly~fa~-~~~g~y~~~~~~~~~~~y~s~s~~~DEl~WAAawLy~ATGd~~Y 273 (510)
T PLN02266 195 TAAALAAASLVFRKSDPTYSKLLVRRAIRVFQFAD-KYRGAYSNGLKPDVCPFYCSYSGYQDELLWGAAWLHKATKNPTY 273 (510)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHH-hCCCCccCCCCcccCCCcccCCcchHHHHHHHHHHHHHhCCHHH
Confidence 4456777788886 67776666666666665321 0111 1111122 14455788999999999
Q ss_pred HHHHHH
Q 015433 348 LYRAKA 353 (407)
Q Consensus 348 ~~~a~~ 353 (407)
+..+..
T Consensus 274 l~~~~~ 279 (510)
T PLN02266 274 LNYIQV 279 (510)
T ss_pred HHHHHH
Confidence 987654
No 62
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=40.77 E-value=3.3e+02 Score=25.99 Aligned_cols=39 Identities=23% Similarity=0.419 Sum_probs=26.3
Q ss_pred hHHHHHHHHcccCCCchHHHHHHHHHHHHHcccCCCCCCCC
Q 015433 228 LAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPSS 268 (407)
Q Consensus 228 ~aGI~~~L~~~~~~~~~~~~i~~~l~~~~~~~~~~gnwp~~ 268 (407)
.+-.+.+|+..... ....++++++|+.+.|.++|.|++.
T Consensus 281 Ta~al~aL~~~g~~--~~~~v~~a~~wL~~~Q~~dG~f~~~ 319 (348)
T cd02889 281 TAWALLALMAAGEP--DSEAVKRGVKYLLNTQQEDGDWPQE 319 (348)
T ss_pred HHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCCCCCcCCc
Confidence 34444455554332 3457888999998888889999764
No 63
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=40.14 E-value=4.5e+02 Score=27.34 Aligned_cols=130 Identities=22% Similarity=0.248 Sum_probs=72.0
Q ss_pred hHHHHHHHHcccC----CC--chHHHHHHHHHHHHHcccCCCCCCCCCCCCCCcccccccCchhHHHH-------HHHHH
Q 015433 228 LAGIMHVLMDMEL----KP--DEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLT-------LAKAA 294 (407)
Q Consensus 228 ~aGI~~~L~~~~~----~~--~~~~~i~~~l~~~~~~~~~~gnwp~~~~~~~~~~~~WChG~~Gi~~~-------l~~~~ 294 (407)
.||+...++.++. ++ ...+.++++++-+-+.+.+-|-.+.... -..-.|=-=.+||+-. +++.+
T Consensus 195 tAg~gslllEFg~LSrLTGD~~fE~vA~~A~~~lW~~RS~igLlGn~id---V~tG~W~~~~sGIGAgiDSfyEYllK~y 271 (622)
T KOG2429|consen 195 TAGAGSLLLEFGTLSRLTGDPKFEKVARRALDALWSLRSGIGLLGNHID---VQTGEWTAPDSGIGAGIDSFYEYLLKGY 271 (622)
T ss_pred cccccceeeehhhhHHhhCCcHHHHHHHHHHHHHHhhcCCCCcccceee---ccccceeccccccccchHHHHHHHHHHh
Confidence 3566665555531 22 2456678888766554433221111110 1123465556666553 44445
Q ss_pred HHhCcHHHHHHHHHHHHHH-------------------------------------------------------HHh-CC
Q 015433 295 EVFGEKEFLQAAVDAGEVV-------------------------------------------------------WKR-GL 318 (407)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~-------------------------------------------------------~~~-g~ 318 (407)
-.|+|+++.+.-.++.+.+ |++ |.
T Consensus 272 ILfgd~e~lemf~ea~~ai~~y~r~~~wY~~V~m~~G~v~~p~~dSLqAfwpGlqvLaGDvd~A~~~h~~y~~vwkkyG~ 351 (622)
T KOG2429|consen 272 ILFGDPELLEMFNEAYEAIQKYTRKGPWYVNVNMDSGSVSLPWFDSLQAFWPGLQVLAGDVDDAIRTHLMYFSVWKKYGF 351 (622)
T ss_pred eecCCHHHHHHHHHHHHHHHHHhhcCCeEEEEecCCCceehHHHhhHHhhccchhhhhcchHHHHHHHHHHHHHHHHcCC
Confidence 5588888776655554432 322 43
Q ss_pred C-CCCcccccch-----------hHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 015433 319 L-KRVGICHGIS-----------GNTYVFLSLYRLTGNVEYLYRAKAFACFLYD 360 (407)
Q Consensus 319 ~-~~~~lCHG~a-----------G~~~~ll~l~~~t~~~~~~~~a~~~~~~~~~ 360 (407)
+ ..+.|-++.. =..+.-..+||.|+||-|++--..+.+-+-.
T Consensus 352 lPEryN~~~~~~~~~~~~YPLRPElvEStyyLYrATkdp~yL~vG~~~l~sLe~ 405 (622)
T KOG2429|consen 352 LPERYNLATQEPPPKREGYPLRPELVESTYYLYRATKDPFYLHVGEDMLKSLEK 405 (622)
T ss_pred CcccccccCCCCCCCcccCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 3 2366666666 2455667789999999999876655444433
No 64
>PLN02420 endoglucanase
Probab=39.06 E-value=3.8e+02 Score=27.84 Aligned_cols=67 Identities=22% Similarity=0.287 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHhCCCCCCcc---c----cc----chh----HHHHHHHHHHHhCCHHHH
Q 015433 286 VTLTLAKAAEVFG--EKEFLQAAVDAGEVVWKRGLLKRVGI---C----HG----ISG----NTYVFLSLYRLTGNVEYL 348 (407)
Q Consensus 286 i~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~l---C----HG----~aG----~~~~ll~l~~~t~~~~~~ 348 (407)
.+-+++.++.+|+ |+.|.+.+.+.++.+|+... +.++- + +| .+| ...+-..||+.|+|++|+
T Consensus 192 ~AAALA~AS~vfk~~D~~YA~~~L~~Ak~ly~fA~-~~~g~y~~~~~~~~g~Y~s~s~y~DEl~WAAawLY~ATgd~~Yl 270 (525)
T PLN02420 192 TAAAMAAASIVFRSTNPHYSHLLLHHAQQLFEFGD-KYRGKYDESLKVVKSYYASVSGYMDELLWGATWLYRATDNEHYM 270 (525)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH-hcCCccCCCCcccCCCCCCcCcccHHHHHHHHHHHHHhCCHHHH
Confidence 3445778888886 57776666666666665322 11111 1 11 122 344556789999999999
Q ss_pred HHHHH
Q 015433 349 YRAKA 353 (407)
Q Consensus 349 ~~a~~ 353 (407)
..+..
T Consensus 271 ~~a~~ 275 (525)
T PLN02420 271 SYVVD 275 (525)
T ss_pred HHHHH
Confidence 87654
No 65
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=38.67 E-value=1e+02 Score=31.76 Aligned_cols=85 Identities=25% Similarity=0.323 Sum_probs=57.6
Q ss_pred cccCchhHHHH-HHHHHHHhCcHHHHHHHHHHHHHHHHh----CCC-------------CCCcccccchhHHHHHHHHHH
Q 015433 279 WCHGAPGVTLT-LAKAAEVFGEKEFLQAAVDAGEVVWKR----GLL-------------KRVGICHGISGNTYVFLSLYR 340 (407)
Q Consensus 279 WChG~~Gi~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~-------------~~~~lCHG~aG~~~~ll~l~~ 340 (407)
=|--..|..+. +-.+.+.++|++|.+.|++|.+.+|+. |++ .+.|+=-|+=.--+.++..|-
T Consensus 193 tctAg~gslllEFg~LSrLTGD~~fE~vA~~A~~~lW~~RS~igLlGn~idV~tG~W~~~~sGIGAgiDSfyEYllK~yI 272 (622)
T KOG2429|consen 193 TCTAGAGSLLLEFGTLSRLTGDPKFEKVARRALDALWSLRSGIGLLGNHIDVQTGEWTAPDSGIGAGIDSFYEYLLKGYI 272 (622)
T ss_pred eecccccceeeehhhhHHhhCCcHHHHHHHHHHHHHHhhcCCCCcccceeeccccceeccccccccchHHHHHHHHHHhe
Confidence 44433343333 455566789999999999999999975 221 235665566666677777788
Q ss_pred HhCCHHHHHHHHHHHHHHHHHHh
Q 015433 341 LTGNVEYLYRAKAFACFLYDRAQ 363 (407)
Q Consensus 341 ~t~~~~~~~~a~~~~~~~~~~~~ 363 (407)
+++|+++++.-.+..+-+.++.+
T Consensus 273 Lfgd~e~lemf~ea~~ai~~y~r 295 (622)
T KOG2429|consen 273 LFGDPELLEMFNEAYEAIQKYTR 295 (622)
T ss_pred ecCCHHHHHHHHHHHHHHHHHhh
Confidence 89999999876665555555443
No 66
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=38.31 E-value=5.2e+02 Score=27.51 Aligned_cols=39 Identities=13% Similarity=0.327 Sum_probs=27.6
Q ss_pred HHHHHHHHcccCCC-----chHHHHHHHHHHHHHcccCCCCCCC
Q 015433 229 AGIMHVLMDMELKP-----DEVEDVKGTLRYMIKNRFPSGNYPS 267 (407)
Q Consensus 229 aGI~~~L~~~~~~~-----~~~~~i~~~l~~~~~~~~~~gnwp~ 267 (407)
+-++.+|+.+...+ ...+.++++++|+++.|.++|.|+.
T Consensus 378 a~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~ 421 (634)
T cd02892 378 AEALKALLRLQELPPFGEKVSRERLYDAVDWLLGMQNSNGGFAA 421 (634)
T ss_pred HHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHhccCCCCCEee
Confidence 44556666664432 2357789999999998888888864
No 67
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=31.50 E-value=4.8e+02 Score=25.31 Aligned_cols=76 Identities=13% Similarity=0.038 Sum_probs=46.9
Q ss_pred HHH-HHHHHHHhhhcCChHHHHHHHHHHHHHHhcC-CC----------------CCCceeeCCchHHHHHHHHHHHHcCC
Q 015433 77 LGT-AYLLFKAYQVTKNDNELKLCCDIVEACDSAS-RD----------------SGRVTFICGRAGVCALGAVLAKHAGD 138 (407)
Q Consensus 77 ~Gi-al~l~~l~~~~~~~~~~~~a~~~l~~~~~~~-~~----------------~~~~~~~~G~~Gi~~~~~~l~~~~~~ 138 (407)
+|. ++-|+.+.+.|+++.|.++|++.++-+-+.. ++ ..+.|.=.|+-+.+-.+...|-.+||
T Consensus 187 ~gtlilefaals~~tg~~ifee~arkaldflwekr~rss~l~g~~inihsgdw~rkdsgigagidsyyey~lkayillgd 266 (587)
T KOG2430|consen 187 AGTLILEFAALSRFTGAPIFEEKARKALDFLWEKRHRSSDLMGTTINIHSGDWTRKDSGIGAGIDSYYEYLLKAYILLGD 266 (587)
T ss_pred cchhhhhHHHHhhccCChhhHHHHHHHHHHHHHHhcccccccceeEEeccCcceecccCcCcchHHHHHHHHHHhheecc
Confidence 344 4558888999999999998887776532210 00 01222223444444444455778999
Q ss_pred hhHHHHHHHHhhhc
Q 015433 139 ERLLDHYLTKFKEI 152 (407)
Q Consensus 139 ~~~~~~~~~~~~~~ 152 (407)
+.+++++.+..+.+
T Consensus 267 dsfldrfn~hydai 280 (587)
T KOG2430|consen 267 DSFLDRFNKHYDAI 280 (587)
T ss_pred HHHHHHHHHHHHHH
Confidence 99988876665544
No 68
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=29.80 E-value=2.3e+02 Score=28.46 Aligned_cols=111 Identities=20% Similarity=0.254 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHHcccC---------CC-----CCCCCCC-CCCCcccccccCch------hHHHHHHHHHHHhC--cH
Q 015433 244 EVEDVKGTLRYMIKNRFP---------SG-----NYPSSEG-SESDRLVHWCHGAP------GVTLTLAKAAEVFG--EK 300 (407)
Q Consensus 244 ~~~~i~~~l~~~~~~~~~---------~g-----nwp~~~~-~~~~~~~~WChG~~------Gi~~~l~~~~~~~~--~~ 300 (407)
.++.++=.++|+++.+.+ +| .|+.... ...+....+.-+.| .++-+++.+..+++ |+
T Consensus 96 llde~kwg~D~llkm~~~~~~~~~qvgdg~~~h~~w~~~~~~~~~~~~~~~~~~~~~t~~~~~~AAalA~As~v~k~~d~ 175 (444)
T PF00759_consen 96 LLDEAKWGLDWLLKMQDSDGTFYAQVGDGGVDHKVWGRPEIMPDDDPSYRYDAPNPGTDATAEFAAALAAASRVFKDFDP 175 (444)
T ss_dssp HHHHHHHHHHHHHHTBSCTTEEEEEESTHHHHHTEESTGGGTGSGESEEEEETTB-EHHHHHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHHHHHhccCCCCceeeeccCccchhhcccCCCCCCCCCCcceEecCCCchHHHHHHHHHHHHHHHhcccCCH
Confidence 466777788899887765 22 1433210 11111112222322 23345777778876 57
Q ss_pred HHHHHHHHHHHHHHHhCC-----C-CC------Ccccccchh--HHHHHHHHHHHhCCHHHHHHHHHH
Q 015433 301 EFLQAAVDAGEVVWKRGL-----L-KR------VGICHGISG--NTYVFLSLYRLTGNVEYLYRAKAF 354 (407)
Q Consensus 301 ~~~~~~~~~~~~~~~~g~-----~-~~------~~lCHG~aG--~~~~ll~l~~~t~~~~~~~~a~~~ 354 (407)
.+.+.+.+.++..|.... . .+ ...|-..-. ...+-..||+.|++++|+..+.++
T Consensus 176 ~~A~~~L~~A~~~~~~a~~~~~~~~~~~~~~~~~~Y~~~~~~De~~wAA~~Ly~aTg~~~Y~~~a~~~ 243 (444)
T PF00759_consen 176 AYAAQCLKAAKEAYAFAKKNPGVYSDNPQPNGGGFYNSSGYEDELAWAAAELYRATGDESYLDYAKEY 243 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTHGGGTSTCTTTTTSHCS-SHHHHHHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCCcccccCCcccCCCcccHHHHHHHHHHHhcCcHHHHHHHHHh
Confidence 766666666666655321 0 00 011110000 356678899999999999876554
No 69
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=29.58 E-value=7.1e+02 Score=26.48 Aligned_cols=24 Identities=25% Similarity=0.798 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHcccCCCCCCCC
Q 015433 245 VEDVKGTLRYMIKNRFPSGNYPSS 268 (407)
Q Consensus 245 ~~~i~~~l~~~~~~~~~~gnwp~~ 268 (407)
.+.++++++|+++.|.++|.|+..
T Consensus 582 ~~~i~r~i~wL~~~Q~~~G~w~~~ 605 (634)
T cd02892 582 SEAVERGIKYLLNTQLPDGDWPQE 605 (634)
T ss_pred hHHHHHHHHHHHHcCCCCCCCCCc
Confidence 457889999999888889999764
No 70
>PLN02909 Endoglucanase
Probab=27.73 E-value=6.8e+02 Score=25.73 Aligned_cols=66 Identities=21% Similarity=0.340 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhC--cHHHHHHHHHHHHHHHHh-----CCCC-C-Ccccccchh----HHHHHHHHHHHhCCHHHHHHHHH
Q 015433 287 TLTLAKAAEVFG--EKEFLQAAVDAGEVVWKR-----GLLK-R-VGICHGISG----NTYVFLSLYRLTGNVEYLYRAKA 353 (407)
Q Consensus 287 ~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~-----g~~~-~-~~lCHG~aG----~~~~ll~l~~~t~~~~~~~~a~~ 353 (407)
+-+++.++.+|+ |+.|-+.+.+.++.+|+. +... . +-.| ...| ...+-..||+.|++++|+..+..
T Consensus 186 AAAlA~as~vfk~~D~~yA~~lL~~Ak~~y~fA~~~~g~y~~~~~~y~-s~s~y~DEl~WAAawLy~aTgd~~Yl~~~~~ 264 (486)
T PLN02909 186 AAAMAASSMVFRHVDHKYSRRLLNKAKLLFKFAKAHKGTYDGECPFYC-SYSGYNDELLWAATWLYKATKKQMYLKYIKH 264 (486)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCccc-cCCCcchHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 446777777876 566665555555555543 2211 1 1112 1122 33455678999999999976543
No 71
>PLN02308 endoglucanase
Probab=26.45 E-value=6.9e+02 Score=25.72 Aligned_cols=67 Identities=18% Similarity=0.214 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHhC-----CCCCCcc----c---ccchhH----HHHHHHHHHHhCCHHH
Q 015433 286 VTLTLAKAAEVFG--EKEFLQAAVDAGEVVWKRG-----LLKRVGI----C---HGISGN----TYVFLSLYRLTGNVEY 347 (407)
Q Consensus 286 i~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~g-----~~~~~~l----C---HG~aG~----~~~ll~l~~~t~~~~~ 347 (407)
++-+++.++.+|. |+.|-+.+.+.++.+|+.. ...+ +. | ....|- ..+-..||+.|++++|
T Consensus 177 ~AAAlA~as~vf~~~D~~YA~~lL~~Ak~ly~fa~~~~g~y~~-~~~~~~~~~Y~~~s~~~DEl~WAAawLy~ATgd~~Y 255 (492)
T PLN02308 177 TAAALAAASIVFRKRDPAYSRLLLDRAVRVFAFADKYRGAYSS-SLHAAVCPFYCDFNGYQDELLWGAAWLHKASRRREY 255 (492)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHcCCcccC-CCCcccCCCcCCCCcccHHHHHHHHHHHHHhCCHHH
Confidence 3346777788887 6777666666666665432 1111 11 1 011111 5566788999999999
Q ss_pred HHHHHH
Q 015433 348 LYRAKA 353 (407)
Q Consensus 348 ~~~a~~ 353 (407)
++.+..
T Consensus 256 l~~~~~ 261 (492)
T PLN02308 256 REYIVK 261 (492)
T ss_pred HHHHHH
Confidence 876544
No 72
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=26.20 E-value=6.5e+02 Score=24.95 Aligned_cols=122 Identities=20% Similarity=0.226 Sum_probs=72.3
Q ss_pred CCchHHHHHHHHHHHHHcc-cCCCCCCCCCCCCCC--cccccccCchhHHHHHHHHHHHhCcH--HHHHHHHHHHHH-HH
Q 015433 241 KPDEVEDVKGTLRYMIKNR-FPSGNYPSSEGSESD--RLVHWCHGAPGVTLTLAKAAEVFGEK--EFLQAAVDAGEV-VW 314 (407)
Q Consensus 241 ~~~~~~~i~~~l~~~~~~~-~~~gnwp~~~~~~~~--~~~~WChG~~Gi~~~l~~~~~~~~~~--~~~~~~~~~~~~-~~ 314 (407)
.++..+.+...++|+.+.. .+.|+|-....+... .-..=|+|-.=+++++..+.+..+.. +..+.+-...+. .|
T Consensus 73 ~~~~~~~v~hG~~y~~~~~R~~~gg~~~~~~~dg~~~Dat~d~Y~haFallA~A~~a~a~~~~a~~~~~~a~~~l~~~~~ 152 (388)
T COG2942 73 RGPWLDAVAHGIAYLARVGRDPEGGWYFALDNDGGPVDATKDLYGHAFALLAAAHAATAGPPRADELLDEALDVLERRFW 152 (388)
T ss_pred CccHHHHHHhHHHHHHhcCcCCCCCeEEEecCCCCcccccHhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHh
Confidence 3456788889999996543 367765322211111 11334666666777777766655443 455555555443 34
Q ss_pred HhC--C---C--C--CCccc-ccchhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 015433 315 KRG--L---L--K--RVGIC-HGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRA 362 (407)
Q Consensus 315 ~~g--~---~--~--~~~lC-HG~aG~~~~ll~l~~~t~~~~~~~~a~~~~~~~~~~~ 362 (407)
+.. + . . +..+| -=.+=..++++..|..|++..|+.+|.++++.++.+.
T Consensus 153 ~~~~pl~~~e~~~~~~~pl~sNp~MHl~EA~LA~~e~~~~~~~~~~A~~ia~l~~~rf 210 (388)
T COG2942 153 REEHPLGGFEEDNPGSAPLGSNPHMHLLEAMLAAYEATGEKTWLDRADRIADLIISRF 210 (388)
T ss_pred hhcCCcccccccCCCCCccCCCcchHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHh
Confidence 332 1 0 0 11111 0022356788999999999999999999998887764
No 73
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=25.56 E-value=1e+02 Score=31.24 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Q 015433 331 NTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQ 363 (407)
Q Consensus 331 ~~~~ll~l~~~t~~~~~~~~a~~~~~~~~~~~~ 363 (407)
.++.+..+||.|+|++|++.+.++.+-+.+..+
T Consensus 360 ~iES~fylyR~TgD~~yre~gw~if~ai~k~~r 392 (452)
T PF01532_consen 360 TIESLFYLYRATGDPKYREWGWDIFQAIEKYCR 392 (452)
T ss_dssp HHHHHHHHHHHH-BHHHHHHHHHHHHHHHHHTE
T ss_pred hhhheeEEEEEcCCchHHHHHHHHHHHHHHhcc
Confidence 356677889999999999999998887777643
No 74
>PRK11097 endo-1,4-D-glucanase; Provisional
Probab=22.53 E-value=5.9e+02 Score=25.23 Aligned_cols=37 Identities=16% Similarity=0.010 Sum_probs=31.1
Q ss_pred ccchhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 015433 326 HGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRA 362 (407)
Q Consensus 326 HG~aG~~~~ll~l~~~t~~~~~~~~a~~~~~~~~~~~ 362 (407)
-|..=++++|+.+.+.-+++.|...|..+++.+.+..
T Consensus 116 DGDl~IA~ALl~A~~~W~~~~Y~~~A~~ll~~I~~~e 152 (376)
T PRK11097 116 DADLWIAYSLLEAGRLWKEPRYTALGTALLKRIAREE 152 (376)
T ss_pred hHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhc
Confidence 3455589999999999999999999999888887753
No 75
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=21.62 E-value=3.4e+02 Score=28.24 Aligned_cols=73 Identities=26% Similarity=0.291 Sum_probs=50.1
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHH----------------hCCCCCCcccccchhHH-------HHHHHHHHHhCCH
Q 015433 289 TLAKAAEVFGEKEFLQAAVDAGEVVWK----------------RGLLKRVGICHGISGNT-------YVFLSLYRLTGNV 345 (407)
Q Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~g~~~~~~lCHG~aG~~-------~~ll~l~~~t~~~ 345 (407)
.++.++..++|+-+++.|.+.++.+.. .|..+++++--|-+.+. .-|..+.+.|++|
T Consensus 270 Gllsay~lsge~~f~~kA~~igdkLLpAfntptGIp~~~vn~ksG~~~n~~wasgg~SILaE~gtlhlef~~LS~ltg~P 349 (625)
T KOG2204|consen 270 GLLSAYALSGEEMFLEKAPEIGDKLLPAFNTPTGIPKALVNNKSGDADNYGWASGGSSILAEFGTLHLEFSYLSKLTGNP 349 (625)
T ss_pred hhHHHhhhcccHHHHHhhHHHHHHhhhcccCCCCCchhhhccccCccCCcccccCcchHhhhcCceeeehHHhhhccCCc
Confidence 356667778899899888888876632 12234677877744443 2357788899999
Q ss_pred HHHHHHHHHHHHHHHH
Q 015433 346 EYLYRAKAFACFLYDR 361 (407)
Q Consensus 346 ~~~~~a~~~~~~~~~~ 361 (407)
.|.++...+...+...
T Consensus 350 ~~~ekv~~IRk~l~k~ 365 (625)
T KOG2204|consen 350 TFAEKVVKIRKVLNKS 365 (625)
T ss_pred hHHHHHHHHHHHHHhh
Confidence 9998887765555443
No 76
>PLN02345 endoglucanase
Probab=20.22 E-value=3.5e+02 Score=27.70 Aligned_cols=67 Identities=19% Similarity=0.252 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHhCCCCCCccc----------ccchh----HHHHHHHHHHHhCCHHHH
Q 015433 285 GVTLTLAKAAEVFG--EKEFLQAAVDAGEVVWKRGLLKRVGIC----------HGISG----NTYVFLSLYRLTGNVEYL 348 (407)
Q Consensus 285 Gi~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~lC----------HG~aG----~~~~ll~l~~~t~~~~~~ 348 (407)
.++-+++.+..+|+ |+.|-+.+.+.++.+|+..- ++++.+ ....| ...+-..||+.|+|++|+
T Consensus 146 ~~AAAlA~as~vfk~~D~~YA~~lL~~Ak~ly~fa~-~~~g~y~~~~~~~~~~Y~s~~~~DEl~WAAawLy~ATgd~~Yl 224 (469)
T PLN02345 146 ETAAAMAAASLVFKSSDSTYSDTLLKHAKQLFNFAD-KYRGSYSESIPEVQDYYNSTGYGDELLWAASWLYHATGDKTYL 224 (469)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHH-hCCCcccCCCCccCCCCCCcccccHHHHHHHHHHHHhCCHHHH
Confidence 35556778888887 56666666555555554321 011111 11122 255667889999999999
Q ss_pred HHHH
Q 015433 349 YRAK 352 (407)
Q Consensus 349 ~~a~ 352 (407)
..+.
T Consensus 225 ~~~~ 228 (469)
T PLN02345 225 AYVT 228 (469)
T ss_pred HHHH
Confidence 7763
Done!