Query 015434
Match_columns 407
No_of_seqs 260 out of 2070
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 12:33:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015434.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015434hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.3 5E-06 1.7E-10 66.1 9.7 71 173-243 34-105 (110)
2 2i68_A Protein EMRE; transmemb 98.2 3.5E-06 1.2E-10 69.5 8.0 68 327-398 37-105 (137)
3 2i68_A Protein EMRE; transmemb 98.2 4E-06 1.4E-10 69.1 7.4 71 173-243 34-105 (137)
4 3b5d_A Multidrug transporter E 98.0 0.00016 5.5E-09 57.2 13.8 57 342-398 48-105 (110)
5 2l2t_A Receptor tyrosine-prote 44.1 23 0.00078 22.4 3.2 9 390-398 29-37 (44)
6 2ks1_B Epidermal growth factor 39.5 29 0.001 21.9 3.1 6 392-397 32-37 (44)
7 3l1l_A Arginine/agmatine antip 26.0 4E+02 0.014 24.8 15.7 24 379-402 409-432 (445)
8 2jwa_A Receptor tyrosine-prote 18.7 1.1E+02 0.0039 19.2 3.1 8 392-399 32-39 (44)
9 3tds_E Formate/nitrite transpo 11.0 8E+02 0.027 21.6 11.0 71 220-300 59-129 (268)
10 2l9u_A Receptor tyrosine-prote 10.1 1.8E+02 0.0061 17.1 2.0 16 385-400 20-35 (40)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.26 E-value=5e-06 Score=66.07 Aligned_cols=71 Identities=15% Similarity=0.158 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHhhhcCcchhhHHHH-hhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHhhhheeeeccc
Q 015434 173 LPLALVHTLGNLFTNMSLGKVAVSFTHTI-KATEPFFSVLLSAMFLGEFPTLWVVGSLIPIMGGVALASVTE 243 (407)
Q Consensus 173 ~~~g~l~~~~~~~~~~al~~~s~s~~~~i-~~~~Pvft~lls~~~l~er~s~~~~~~~~~~~~Gv~l~~~~~ 243 (407)
+...+.+.+..++...++++.+.+.+..+ ..+.|+++.+++++++||+++..++++++++++|+++....+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44445677888999999999999999888 899999999999999999999999999999999999876544
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.21 E-value=3.5e-06 Score=69.47 Aligned_cols=68 Identities=15% Similarity=0.115 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhHHhHH-HHHHHHHHHHHHHHHcCCcCchhHHHHHHHHHHHHHHHHHhc
Q 015434 327 SLIAAICYHAYQQVSYMILQRVSPVTHSVG-NCVKRVVVIVSSVMFFRTPVSAINAFGTGIALAGVFLYSRVK 398 (407)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~l~~~s~~~~sv~-~~l~~v~~iils~~~fge~~s~~~~~G~~lil~G~~ly~~~~ 398 (407)
++..+++++++ ..++++.++.++..+ ..+.|++++++++++|||++++.+++|++++++|+++.+..+
T Consensus 37 i~~~~ls~~l~----~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 37 IICYCASFWLL----AQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHH----HHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHH----HHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34445555555 578899999877666 889999999999999999999999999999999999987654
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.16 E-value=4e-06 Score=69.12 Aligned_cols=71 Identities=15% Similarity=0.158 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHhhhcCcchhhHHHH-hhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHhhhheeeeccc
Q 015434 173 LPLALVHTLGNLFTNMSLGKVAVSFTHTI-KATEPFFSVLLSAMFLGEFPTLWVVGSLIPIMGGVALASVTE 243 (407)
Q Consensus 173 ~~~g~l~~~~~~~~~~al~~~s~s~~~~i-~~~~Pvft~lls~~~l~er~s~~~~~~~~~~~~Gv~l~~~~~ 243 (407)
+...+++.+..++.+.++++++++.+..+ .++.|++++++++++++|+++..++++++++++|++++...+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34445577889999999999999999888 899999999999999999999999999999999999876543
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.01 E-value=0.00016 Score=57.22 Aligned_cols=57 Identities=18% Similarity=0.134 Sum_probs=49.7
Q ss_pred HHHhhccChhHHhHH-HHHHHHHHHHHHHHHcCCcCchhHHHHHHHHHHHHHHHHHhc
Q 015434 342 YMILQRVSPVTHSVG-NCVKRVVVIVSSVMFFRTPVSAINAFGTGIALAGVFLYSRVK 398 (407)
Q Consensus 342 ~~~l~~~s~~~~sv~-~~l~~v~~iils~~~fge~~s~~~~~G~~lil~G~~ly~~~~ 398 (407)
...+++.+..++... ..+.++.++++++++|||+++..+++|+.+++.|++..+..+
T Consensus 48 ~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 48 AQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 457788887776554 789999999999999999999999999999999999887654
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=44.09 E-value=23 Score=22.39 Aligned_cols=9 Identities=33% Similarity=0.416 Sum_probs=3.5
Q ss_pred HHHHHHHhc
Q 015434 390 GVFLYSRVK 398 (407)
Q Consensus 390 G~~ly~~~~ 398 (407)
+.++|.+.+
T Consensus 29 ~~~~~~RRR 37 (44)
T 2l2t_A 29 TFAVYVRRK 37 (44)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHhhhh
Confidence 333444333
No 6
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=39.50 E-value=29 Score=21.89 Aligned_cols=6 Identities=33% Similarity=0.290 Sum_probs=2.3
Q ss_pred HHHHHh
Q 015434 392 FLYSRV 397 (407)
Q Consensus 392 ~ly~~~ 397 (407)
++|.+.
T Consensus 32 ~~~~RR 37 (44)
T 2ks1_B 32 GLFMRR 37 (44)
T ss_dssp HHHHHT
T ss_pred HHHhhh
Confidence 334333
No 7
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=25.97 E-value=4e+02 Score=24.76 Aligned_cols=24 Identities=4% Similarity=-0.176 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHhccccc
Q 015434 379 INAFGTGIALAGVFLYSRVKRIKP 402 (407)
Q Consensus 379 ~~~~G~~lil~G~~ly~~~~~~~~ 402 (407)
..+.|.++++.|+.+|.+.+++++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~~ 432 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRLH 432 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Confidence 455688888889888876655443
No 8
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=18.67 E-value=1.1e+02 Score=19.16 Aligned_cols=8 Identities=0% Similarity=0.032 Sum_probs=3.1
Q ss_pred HHHHHhcc
Q 015434 392 FLYSRVKR 399 (407)
Q Consensus 392 ~ly~~~~~ 399 (407)
++|.+.++
T Consensus 32 ~~~~RRR~ 39 (44)
T 2jwa_A 32 GILIKRRQ 39 (44)
T ss_dssp HHHHHHHC
T ss_pred Hhheehhh
Confidence 34444333
No 9
>3tds_E Formate/nitrite transporter; membrane protein; HET: PG4 BOG; 1.98A {Clostridium difficile} PDB: 3tdo_A* 3tdr_A* 3te0_A* 3tdx_A* 3te2_A* 3te1_A* 3tdp_A*
Probab=11.00 E-value=8e+02 Score=21.63 Aligned_cols=71 Identities=10% Similarity=0.077 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHhhhheeeecccccccHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHHHHH
Q 015434 220 FPTLWVVGSLIPIMGGVALASVTEVSFNWAGFWSAMASNLTNQSRNVLSKKVMVNKEEALDNITLFSIITVMSFILMIPV 299 (407)
Q Consensus 220 r~s~~~~~~~~~~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~vl~k~~~~~~~~~~~~~~l~~~~~~~~~l~l~p~ 299 (407)
.+...++++-+.--.|.+++...+.+. ..|..+.+.- .++.||..- .+-+..+...+..+++|.++..-+
T Consensus 59 ~~g~~~ll~g~~F~~Gl~lVvl~g~eL-fTgn~l~~~~-------~~~~~~~s~--~~~lr~W~~v~~gNliGa~~~a~l 128 (268)
T 3tds_E 59 GSPMTKIVMGLSFAIALSLVIMTGTEL-FTGNNMVMSA-------GMLNKGVSI--KDTSKIWAYSWVGNLIGALVLGII 128 (268)
T ss_dssp TCTTHHHHHHHTCTHHHHHHHHHTCCC-HHHHHHHHHH-------HHHTTSSCH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHhCccc-cccchHHHHH-------HHHcCCCcH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555655555544432 3344332211 122332210 011224555667777777765544
Q ss_pred H
Q 015434 300 T 300 (407)
Q Consensus 300 ~ 300 (407)
.
T Consensus 129 ~ 129 (268)
T 3tds_E 129 F 129 (268)
T ss_dssp H
T ss_pred H
Confidence 3
No 10
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=10.13 E-value=1.8e+02 Score=17.10 Aligned_cols=16 Identities=44% Similarity=0.621 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhccc
Q 015434 385 GIALAGVFLYSRVKRI 400 (407)
Q Consensus 385 ~lil~G~~ly~~~~~~ 400 (407)
.+++.|.++|.+.++.
T Consensus 20 f~~lg~tflywrgrrh 35 (40)
T 2l9u_A 20 FMMLGGTFLYWRGRRH 35 (40)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhCceeEEEccccc
Confidence 3456778888876653
Done!