Query 015434
Match_columns 407
No_of_seqs 260 out of 2070
Neff 8.7
Searched_HMMs 13730
Date Mon Mar 25 12:33:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015434.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015434hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 13.7 84 0.0061 15.6 2.9 20 381-400 2-22 (27)
2 d2r6gf1 e.70.1.1 (F:13-260) Ma 7.4 3.9E+02 0.029 21.2 6.4 54 171-228 4-57 (248)
3 d1fftb2 f.17.2.1 (B:27-117) Cy 3.8 98 0.0072 20.7 -0.0 17 386-402 30-46 (91)
4 d1iwga7 f.35.1.1 (A:7-37,A:331 3.8 7.5E+02 0.055 18.2 7.8 47 346-392 61-107 (199)
5 d1iwga8 f.35.1.1 (A:513-566,A: 3.6 8.2E+02 0.06 18.3 10.2 30 362-391 95-124 (222)
6 d3dtub2 f.17.2.1 (B:30-129) Ba 3.5 3.9E+02 0.029 17.6 3.2 14 386-399 41-54 (100)
7 d1u7ga_ f.44.1.1 (A:) Ammonium 2.9 1.2E+03 0.09 19.1 21.0 83 208-294 241-325 (383)
8 d3ehbb2 f.17.2.1 (B:1-107) Bac 2.8 5.5E+02 0.04 17.1 3.4 13 387-399 48-60 (107)
9 d1uptb_ a.193.1.1 (B:) Golgi a 2.6 2.5E+02 0.018 17.0 0.9 21 210-230 11-31 (58)
10 d2axtt1 f.23.34.1 (T:1-30) Pho 2.2 5E+02 0.036 12.9 3.7 11 366-376 17-27 (30)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=13.69 E-value=84 Score=15.62 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHH-HHhccc
Q 015434 381 AFGTGIALAGVFLY-SRVKRI 400 (407)
Q Consensus 381 ~~G~~lil~G~~ly-~~~~~~ 400 (407)
++|.+.+-.|...| .+.+.+
T Consensus 2 vlgli~~tl~glf~aayqqyk 22 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQQYK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred eeeehHHHHHHHHHHHHHHhc
Confidence 45666665554444 344443
No 2
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=7.45 E-value=3.9e+02 Score=21.25 Aligned_cols=54 Identities=15% Similarity=0.052 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCcchhhHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHH
Q 015434 171 AILPLALVHTLGNLFTNMSLGKVAVSFTHTIKATEPFFSVLLSAMFLGEFPTLWVVGS 228 (407)
Q Consensus 171 ~~~~~g~l~~~~~~~~~~al~~~s~s~~~~i~~~~Pvft~lls~~~l~er~s~~~~~~ 228 (407)
+++++|++.++..++....+..-+..++. ..-+.+.++.++++.+|.-.+|++.
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~kyi~ 57 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRYVY 57 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccceehhh
Confidence 34566776666655555555544444333 3444667777888888877777753
No 3
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=3.78 E-value=98 Score=20.75 Aligned_cols=17 Identities=12% Similarity=-0.232 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhccccc
Q 015434 386 IALAGVFLYSRVKRIKP 402 (407)
Q Consensus 386 lil~G~~ly~~~~~~~~ 402 (407)
+.+.|...|...|.|++
T Consensus 30 v~V~~~~~~~~~ryR~~ 46 (91)
T d1fftb2 30 IPAILMAVGFAWKYRAS 46 (91)
T ss_dssp THHHHHHHTTTTTTTTS
T ss_pred HHHHHHHHhhheeeecc
Confidence 34556666666555443
No 4
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=3.75 E-value=7.5e+02 Score=18.20 Aligned_cols=47 Identities=11% Similarity=0.113 Sum_probs=30.6
Q ss_pred hccChhHHhHHHHHHHHHHHHHHHHHcCCcCchhHHHHHHHHHHHHH
Q 015434 346 QRVSPVTHSVGNCVKRVVVIVSSVMFFRTPVSAINAFGTGIALAGVF 392 (407)
Q Consensus 346 ~~~s~~~~sv~~~l~~v~~iils~~~fge~~s~~~~~G~~lil~G~~ 392 (407)
+..-+.........-.+...+....++|.+++.....+..+.+....
T Consensus 61 rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~v 107 (199)
T d1iwga7 61 QNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLV 107 (199)
T ss_dssp CCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHH
T ss_pred hhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhc
Confidence 44444444444444455566666778899999988888887766554
No 5
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=3.56 E-value=8.2e+02 Score=18.33 Aligned_cols=30 Identities=10% Similarity=-0.024 Sum_probs=22.3
Q ss_pred HHHHHHHHHHcCCcCchhHHHHHHHHHHHH
Q 015434 362 VVVIVSSVMFFRTPVSAINAFGTGIALAGV 391 (407)
Q Consensus 362 v~~iils~~~fge~~s~~~~~G~~lil~G~ 391 (407)
++..+.+..+.|.+++....+|.++.+...
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi~ 124 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIGLS 124 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhhhh
Confidence 445566777889999999988888865443
No 6
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.53 E-value=3.9e+02 Score=17.60 Aligned_cols=14 Identities=21% Similarity=0.247 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHhcc
Q 015434 386 IALAGVFLYSRVKR 399 (407)
Q Consensus 386 lil~G~~ly~~~~~ 399 (407)
+.+.|...|...+.
T Consensus 41 ~~V~~~l~~~~~~~ 54 (100)
T d3dtub2 41 IFVTLLILYAVWRF 54 (100)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhh
Confidence 33445555554443
No 7
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=2.87 E-value=1.2e+03 Score=19.15 Aligned_cols=83 Identities=11% Similarity=0.126 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhhhheeeecccccccHHH-HHHHHHHH-HHHHHHHHHHHHhhhccccCCChhHHH
Q 015434 208 FSVLLSAMFLGEFPTLWVVGSLIPIMGGVALASVTEVSFNWAG-FWSAMASN-LTNQSRNVLSKKVMVNKEEALDNITLF 285 (407)
Q Consensus 208 ft~lls~~~l~er~s~~~~~~~~~~~~Gv~l~~~~~~~~~~~G-~~~~l~s~-~~~a~~~vl~k~~~~~~~~~~~~~~l~ 285 (407)
++.++...+.++|.+......- +++|.+-++-.....++++ .+...++. +++-.+..+.+|+. -++..+...+=
T Consensus 241 ~~~~~~~~~~~~k~~~~~~~nG--~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~~--iDD~~~~~~vH 316 (383)
T d1u7ga_ 241 LGWIFGEWALRGLPSLLGACSG--AIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLR--VDDPCDVFGVH 316 (383)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHH--HHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHC--SCCGGGHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHH--hhhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHhhcc--cccccceEeeh
Confidence 3333333456677877665432 2334443333322334443 44444433 44444444444432 22334444444
Q ss_pred HHHHHHHHH
Q 015434 286 SIITVMSFI 294 (407)
Q Consensus 286 ~~~~~~~~l 294 (407)
....+.|.+
T Consensus 317 g~~Gi~G~l 325 (383)
T d1u7ga_ 317 GVCGIVGCI 325 (383)
T ss_dssp HHHHHHHHH
T ss_pred hhhHHHHHH
Confidence 444455544
No 8
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=2.82 E-value=5.5e+02 Score=17.09 Aligned_cols=13 Identities=15% Similarity=0.087 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhcc
Q 015434 387 ALAGVFLYSRVKR 399 (407)
Q Consensus 387 il~G~~ly~~~~~ 399 (407)
.+.|...|...+.
T Consensus 48 ~V~~~~~~~~~~~ 60 (107)
T d3ehbb2 48 FVCLLLLICIVRF 60 (107)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhhh
Confidence 3445555554443
No 9
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.57 E-value=2.5e+02 Score=17.00 Aligned_cols=21 Identities=29% Similarity=0.175 Sum_probs=13.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHH
Q 015434 210 VLLSAMFLGEFPTLWVVGSLI 230 (407)
Q Consensus 210 ~lls~~~l~er~s~~~~~~~~ 230 (407)
+++.+...+|..+..++++.+
T Consensus 11 vLfeYMmG~E~~tlaKVi~av 31 (58)
T d1uptb_ 11 VLFEYMMGRETKTMAKVITTV 31 (58)
T ss_dssp HHHHHHTTSSHHHHHHHHHHH
T ss_pred HHHHHHcCcchhHHHHHHHHH
Confidence 456667777777777666544
No 10
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.21 E-value=5e+02 Score=12.85 Aligned_cols=11 Identities=36% Similarity=0.652 Sum_probs=4.8
Q ss_pred HHHHHHcCCcC
Q 015434 366 VSSVMFFRTPV 376 (407)
Q Consensus 366 ils~~~fge~~ 376 (407)
++-.++|.|++
T Consensus 17 fffaiffrepp 27 (30)
T d2axtt1 17 FFFAIFFREPP 27 (30)
T ss_dssp HHHHHHTSCCC
T ss_pred HHHHHHhcCCC
Confidence 33344445543
Done!